Psyllid ID: psy16345

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
VVSNIPSLPPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSIADEDE
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEEEEEEcccEEcccccEEEEEccEEEEEEccccccHHHHHHHHHcccccccEEEEEccEEcccccccEEcEEEccccccccccHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccEEEEEEEEEEcccEEEEEcEEEEccccEEEEEEccccccHHHHHHHHHccccccccEEEEcccccccccccccEEEEEEEcccccccHHHHHHHcHccccc
Coil and Loop (DISEMBL)
vvsnipslppekyplshrpleLVFSGlsvtldkrpilkdvsgvvkpgellavmgpsgcgkttLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQqdiffpeltlrQTLEVSIADEDE
Flexible Loop (DISEMBL)
vvsnipslppekyplshrPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAgrvkldsgvirlnkerlnkrwkRKICYVLQqdiffpeltlrqTLEVSIADEDE
Low Complexity Region (SEG)
VVSNIPSLPPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSIADEDE
Disordered region (IsUnstruct)
******************PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEV*******
Disordered Region (DISOPRED)
*************PLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSIA****
Disordered Region (DISEMBL)
VVSNIPSLPPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSIADEDE
Disordered Region (DISPRO)
*****************RPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSIADE**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VVSNIPSLPPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSIADEDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
Q55DA0	615	ABC transporter G family	yes	N/A	0.884	0.173	0.456	2e-17
Q7XA72	672	ABC transporter G family	yes	N/A	0.685	0.123	0.5	8e-16
Q93YS4	751	ABC transporter G family	no	N/A	0.685	0.110	0.482	2e-15
Q9ZU35	725	ABC transporter G family	no	N/A	0.818	0.136	0.432	2e-15
Q9SZR9	638	ABC transporter G family	no	N/A	0.867	0.164	0.396	9e-15
Q9FT51	737	ABC transporter G family	no	N/A	0.661	0.108	0.475	1e-14
Q84TH5	662	ABC transporter G family	no	N/A	0.669	0.122	0.433	2e-14
P43071	1501	Multidrug resistance prot	N/A	N/A	0.719	0.057	0.436	6e-14
Q5W274	1447	Pleiotropic drug resistan	N/A	N/A	0.743	0.062	0.446	9e-14
Q5FA19	352	Fe(3+) ions import ATP-bi	yes	N/A	0.760	0.261	0.367	3e-13

>sp|Q55DA0|ABCGM_DICDI ABC transporter G family member 22 OS=Dictyostelium discoideum GN=abcG22 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/114 (45%), Positives = 71/114 (62%), Gaps = 7/114 (6%)

Query: 6   PSLPPEKYPLS-HRPLELVFSGL--SVTLDKRP--ILKDVSGVVKPGELLAVMGPSGCGK 60
           P++   K  LS  R L + F  L  SVT+ K+   ILK VSG V PGEL+AV GPSG GK
Sbjct: 14  PTMVKSKSQLSLRRSLTITFKDLAYSVTVKKKKMQILKGVSGTVTPGELVAVFGPSGSGK 73

Query: 61  TTLLNCLAGRVKLD--SGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTL 112
           TTLL+ LA R +    SG + +N   ++  +KR   YV+Q+D+  P +T+R+TL
Sbjct: 74  TTLLDILANRKESGEISGAVLINGNEIDDDYKRLCSYVVQEDVLLPTITVRETL 127

May be involved in cell migration.
Dictyostelium discoideum (taxid: 44689)

>sp|Q7XA72|AB21G_ARATH ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=2

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 1/84 (1%)

Query: 33  KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD-SGVIRLNKERLNKRWKR 91
            R +LK VSG+VKPGELLA++GPSG GKTTL+  LAGR++   SG +  N E      KR
Sbjct: 96  NRLVLKCVSGIVKPGELLAMLGPSGSGKTTLVTALAGRLQGKLSGTVSYNGEPFTSSVKR 155

Query: 92  KICYVLQQDIFFPELTLRQTLEVS 115
           K  +V Q D+ +P LT+ +TL  +
Sbjct: 156 KTGFVTQDDVLYPHLTVMETLTYT 179

Arabidopsis thaliana (taxid: 3702)

>sp|Q93YS4|AB22G_ARATH ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 57/85 (67%), Gaps = 2/85 (2%)

Query: 33  KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS--GVIRLNKERLNKRWK 90
           ++ IL  +SG V PGE+LA+MGPSG GKTTLL+ LAGR+   S  G +  N +  +K  K
Sbjct: 176 EKEILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRISQSSTGGSVTYNDKPYSKYLK 235

Query: 91  RKICYVLQQDIFFPELTLRQTLEVS 115
            KI +V Q D+ FP LT+++TL  +
Sbjct: 236 SKIGFVTQDDVLFPHLTVKETLTYA 260

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU35|AB7G_ARATH ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 73/111 (65%), Gaps = 12/111 (10%)

Query: 16  SHRPLELVFSGLSVTL-DK-----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69
           S RP+ + +  ++ +L DK     R +LK+VSG  KPG LLA+MGPSG GKTTLLN LAG
Sbjct: 64  SIRPVTIRWRNITCSLSDKSSKSVRFLLKNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAG 123

Query: 70  RVKLD-----SGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVS 115
           ++ L      SG++ +N +  + +   K+ +V Q+D+FF +LT+R+TL  +
Sbjct: 124 QLSLSPRLHLSGLLEVNGKPSSSK-AYKLAFVRQEDLFFSQLTVRETLSFA 173

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZR9|AB9G_ARATH ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=3 SV=2

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 21/126 (16%)

Query: 7   SLPPEKYPLSHRPLELVFSGLSVTL---------------DKRPILKDVSGVVKPGELLA 51
           SLP   +  ++ P+ L F  L  T+               ++R ILK ++G+VKPGE+LA
Sbjct: 22  SLPFSIFKKANNPVTLKFENLVYTVKLKDSQGCFGKNDKTEERTILKGLTGIVKPGEILA 81

Query: 52  VMGPSGCGKTTLLNCLAGRV-----KLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPEL 106
           ++GPSG GKT+LL  L GRV     KL +G I  N + L+K  KR   +V Q D  +P L
Sbjct: 82  MLGPSGSGKTSLLTALGGRVGEGKGKL-TGNISYNNKPLSKAVKRTTGFVTQDDALYPNL 140

Query: 107 TLRQTL 112
           T+ +TL
Sbjct: 141 TVTETL 146

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FT51|AB27G_ARATH ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 2/82 (2%)

Query: 33  KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS--GVIRLNKERLNKRWK 90
           ++ IL  +SG   PGELLA+MGPSG GKTTLLN L GR    +  G +  N +  +K  K
Sbjct: 164 EKSILNGISGSAYPGELLALMGPSGSGKTTLLNALGGRFNQQNIGGSVSYNDKPYSKHLK 223

Query: 91  RKICYVLQQDIFFPELTLRQTL 112
            +I +V Q D+ FP LT+++TL
Sbjct: 224 TRIGFVTQDDVLFPHLTVKETL 245

Arabidopsis thaliana (taxid: 3702)

>sp|Q84TH5|AB25G_ARATH ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 58/83 (69%), Gaps = 2/83 (2%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD--SGVIRLNKERLNKRW 89
           ++R IL  V+G++ PGE +AV+GPSG GK+TLLN +AGR+     +G I +N  ++ K+ 
Sbjct: 79  EERTILSGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKITKQT 138

Query: 90  KRKICYVLQQDIFFPELTLRQTL 112
            ++  +V Q D+ +P LT+R+TL
Sbjct: 139 LKRTGFVAQDDLLYPHLTVRETL 161

Arabidopsis thaliana (taxid: 3702)

>sp|P43071|CDR1_CANAX Multidrug resistance protein CDR1 OS=Candida albicans GN=CDR1 PE=3 SV=1

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 7/94 (7%)

Query: 27  LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR-----LN 81
           + +  + R IL  V G VKPG++ A+MG SG GKTTLLNCL+ RV   +G+I      +N
Sbjct: 868 VKIKKEDRVILDHVDGWVKPGQITALMGASGAGKTTLLNCLSERVT--TGIITDGERLVN 925

Query: 82  KERLNKRWKRKICYVLQQDIFFPELTLRQTLEVS 115
              L+  ++R I YV QQD+  P  T+R+ L+ S
Sbjct: 926 GHALDSSFQRSIGYVQQQDVHLPTSTVREALQFS 959

Transporter, whose physiological function is not yet established. Confers resistance to the chemical cycloheximide.

Candida albicans (taxid: 5476)

>sp|Q5W274|PDR3_TOBAC Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/94 (44%), Positives = 57/94 (60%), Gaps = 4/94 (4%)

Query: 26  GLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD---SGVIRLNK 82
           GL   L K  IL DVSGV+KPG +  ++GP GCGKT+LL  L+G +      SG I  N 
Sbjct: 177 GLQSELAKIKILNDVSGVIKPGRMTLLLGPPGCGKTSLLKALSGNLDKSLKVSGEISYNG 236

Query: 83  ERLNKRWKRKI-CYVLQQDIFFPELTLRQTLEVS 115
            +L +   +K   YV Q D+  PE+T+R+TL+ S
Sbjct: 237 YKLEEFVPQKTSAYVSQNDLHIPEMTVRETLDYS 270

May be a general defense protein.

Nicotiana tabacum (taxid: 4097)

>sp|Q5FA19|FBPC_NEIG1 Fe(3+) ions import ATP-binding protein FbpC OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=fbpC PE=1 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 60/98 (61%), Gaps = 6/98 (6%)

Query: 27  LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN 86
           LS +    P+L D+S  + PGE+L ++G SGCGKTTLL CLAG  + DSG I L+ + + 
Sbjct: 10  LSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIF 69

Query: 87  KR------WKRKICYVLQQDIFFPELTLRQTLEVSIAD 118
            +       +R++ Y++Q+ + FP LT+ + +   + +
Sbjct: 70  SKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGN 107

Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.

Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) (taxid: 242231)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
242016765	713	ATP-binding cassette transporter, putati	0.851	0.144	0.815	8e-46
328707829	698	PREDICTED: ABC transporter G family memb	0.909	0.157	0.732	6e-42
193657101	675	PREDICTED: ABC transporter G family memb	0.909	0.162	0.732	6e-42
328777285	637	PREDICTED: ABC transporter G family memb	0.834	0.158	0.752	2e-40
380030084	647	PREDICTED: ABC transporter G family memb	0.834	0.156	0.752	3e-40
340711876	647	PREDICTED: ABC transporter G family memb	0.834	0.156	0.742	8e-40
383848546	639	PREDICTED: ABC transporter G family memb	0.834	0.158	0.722	3e-39
307204352	121	Multidrug resistance protein CDR1 [Harpe	0.826	0.826	0.75	4e-38
345483839	675	PREDICTED: ABC transporter G family memb	0.826	0.148	0.74	8e-38
189240189	654	PREDICTED: similar to GA17380-PA [Tribol	0.900	0.166	0.651	2e-36

>gi|242016765|ref|XP_002428899.1| ATP-binding cassette transporter, putative [Pediculus humanus corporis] gi|212513681|gb|EEB16161.1| ATP-binding cassette transporter, putative [Pediculus humanus corporis]

 Score =  187 bits (475), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 84/103 (81%), Positives = 98/103 (95%)

Query: 11  EKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70
           E   L H+P+ELVFSGLSVT++KRPIL+DVSGVV+PGELLAVMGPSGCGKTTLLNCL+GR
Sbjct: 35  EHQHLPHKPVELVFSGLSVTVNKRPILRDVSGVVRPGELLAVMGPSGCGKTTLLNCLSGR 94

Query: 71  VKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLE 113
           VKLDSG IRLN+++L+K+WKR+ICYVLQQDIFFP+LTLRQTLE
Sbjct: 95  VKLDSGSIRLNRDKLSKKWKRRICYVLQQDIFFPDLTLRQTLE 137

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328707829|ref|XP_003243515.1| PREDICTED: ABC transporter G family member 14-like isoform 2 [Acyrthosiphon pisum]

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 82/112 (73%), Positives = 97/112 (86%), Gaps = 2/112 (1%)

Query: 4   NIPSLPPEKYPL-SHRPLELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKT 61
           N+   P   +PL +HRP+EL FS L+VTLD KR +LK++SGVVKPG++LAVMGPSGCGKT
Sbjct: 39  NVQEPPGCMHPLPAHRPIELTFSNLTVTLDDKRHVLKNISGVVKPGQVLAVMGPSGCGKT 98

Query: 62  TLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLE 113
           TLLNCL+GR KLDSG I LN+ERLNKR KR+ICYVLQQDIFFP+LT+RQTLE
Sbjct: 99  TLLNCLSGRTKLDSGCIHLNRERLNKRCKRRICYVLQQDIFFPDLTMRQTLE 150

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193657101|ref|XP_001946047.1| PREDICTED: ABC transporter G family member 14-like isoform 1 [Acyrthosiphon pisum]

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 82/112 (73%), Positives = 97/112 (86%), Gaps = 2/112 (1%)

Query: 4   NIPSLPPEKYPL-SHRPLELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKT 61
           N+   P   +PL +HRP+EL FS L+VTLD KR +LK++SGVVKPG++LAVMGPSGCGKT
Sbjct: 16  NVQEPPGCMHPLPAHRPIELTFSNLTVTLDDKRHVLKNISGVVKPGQVLAVMGPSGCGKT 75

Query: 62  TLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLE 113
           TLLNCL+GR KLDSG I LN+ERLNKR KR+ICYVLQQDIFFP+LT+RQTLE
Sbjct: 76  TLLNCLSGRTKLDSGCIHLNRERLNKRCKRRICYVLQQDIFFPDLTMRQTLE 127

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777285|ref|XP_394443.4| PREDICTED: ABC transporter G family member 22-like isoform 1, partial [Apis mellifera]

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/101 (75%), Positives = 88/101 (87%)

Query: 13  YPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK 72
           YPL  RP++L+F GL V  +KR +L+DVSGVVKPGELLAVMGPSGCGKTTLLNCL+GRV 
Sbjct: 10  YPLDSRPVQLIFRGLQVVKEKRSLLRDVSGVVKPGELLAVMGPSGCGKTTLLNCLSGRVG 69

Query: 73  LDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLE 113
           LD G I LN+ERL KRW+R+ICYV QQD+FFP+LTLRQTLE
Sbjct: 70  LDGGEIWLNRERLTKRWRRRICYVQQQDVFFPDLTLRQTLE 110

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380030084|ref|XP_003698688.1| PREDICTED: ABC transporter G family member 22-like [Apis florea]

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 76/101 (75%), Positives = 88/101 (87%)

Query: 13  YPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK 72
           YPL  RP++L+F GL V  +KR +L+DVSGVVKPGELLAVMGPSGCGKTTLLNCL+GRV 
Sbjct: 20  YPLDSRPVQLIFRGLQVVKEKRSLLRDVSGVVKPGELLAVMGPSGCGKTTLLNCLSGRVG 79

Query: 73  LDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLE 113
           LD G I LN+ERL KRW+R+ICYV QQD+FFP+LTLRQTLE
Sbjct: 80  LDGGEIWLNRERLTKRWRRRICYVQQQDVFFPDLTLRQTLE 120

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711876|ref|XP_003394493.1| PREDICTED: ABC transporter G family member 22-like [Bombus terrestris]

 Score =  167 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 75/101 (74%), Positives = 88/101 (87%)

Query: 13  YPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK 72
           YPL  RP++L+F GL V  +KR +L+DVSGVVKPGELLAVMGPSGCGKTTLLNCL+GRV 
Sbjct: 20  YPLDSRPVQLIFRGLQVVKEKRALLRDVSGVVKPGELLAVMGPSGCGKTTLLNCLSGRVG 79

Query: 73  LDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLE 113
           +D G I LN+ERL KRW+R+ICYV QQD+FFP+LTLRQTLE
Sbjct: 80  VDGGEIWLNRERLTKRWRRRICYVQQQDVFFPDLTLRQTLE 120

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848546|ref|XP_003699910.1| PREDICTED: ABC transporter G family member 22-like [Megachile rotundata]

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/101 (72%), Positives = 88/101 (87%)

Query: 13  YPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK 72
           YPL  RP++L+F GL V  +KR +L+DVSG+VKPG+LLAVMGPSGCGKTTLLNCL+GRV 
Sbjct: 12  YPLDSRPVQLIFRGLQVVKEKRSLLRDVSGIVKPGQLLAVMGPSGCGKTTLLNCLSGRVG 71

Query: 73  LDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLE 113
           +D G I LN+ERL KRW+R+ICYV QQD+FFP+LTLRQTLE
Sbjct: 72  VDGGEIWLNRERLTKRWRRRICYVQQQDVFFPDLTLRQTLE 112

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204352|gb|EFN83107.1| Multidrug resistance protein CDR1 [Harpegnathos saltator]

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 75/100 (75%), Positives = 87/100 (87%)

Query: 14  PLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL 73
           PL  RP++L+F GL V  +KR +L+DVSGVVKPGELLAVMGPSGCGKTTLLNCL+GRV L
Sbjct: 11  PLDSRPVQLIFRGLQVVREKRALLRDVSGVVKPGELLAVMGPSGCGKTTLLNCLSGRVGL 70

Query: 74  DSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLE 113
           D G I LN+ERL KRW+R+ICYV QQD+FFP+LTLRQTLE
Sbjct: 71  DGGEIWLNRERLTKRWRRRICYVQQQDVFFPDLTLRQTLE 110

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483839|ref|XP_001604400.2| PREDICTED: ABC transporter G family member 22-like [Nasonia vitripennis]

 Score =  160 bits (405), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/100 (74%), Positives = 86/100 (86%)

Query: 14  PLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL 73
           PL  RP++LVF  L V  DKR +L+DVSGVVKPGELLAVMGPSGCGK+TLLNCL+GR+ L
Sbjct: 49  PLDSRPVQLVFRNLQVVKDKRSLLRDVSGVVKPGELLAVMGPSGCGKSTLLNCLSGRIGL 108

Query: 74  DSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLE 113
           D G I LN+ERL KRW+R+ICYV QQD+FFP+LTLRQTLE
Sbjct: 109 DGGEIWLNRERLTKRWRRRICYVQQQDVFFPDLTLRQTLE 148

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240189|ref|XP_975214.2| PREDICTED: similar to GA17380-PA [Tribolium castaneum] gi|270011649|gb|EFA08097.1| hypothetical protein TcasGA2_TC005701 [Tribolium castaneum]

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/112 (65%), Positives = 89/112 (79%), Gaps = 3/112 (2%)

Query: 4   NIPSLPPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTL 63
           + P L  +  PL   P+ L F GL+V+   R IL+DV G+V+PG++LAVMGPSGCGKTTL
Sbjct: 13  HFPCLITDHRPL---PVHLAFRGLTVSAGSRQILQDVDGLVRPGQILAVMGPSGCGKTTL 69

Query: 64  LNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVS 115
           LNCL+GR+KLDSG I  N++ L KRWKRKICYVLQQDIFFP+LTLRQTLE +
Sbjct: 70  LNCLSGRLKLDSGQIFFNRDLLCKRWKRKICYVLQQDIFFPDLTLRQTLEYT 121

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
FB|FBgn0020445	1017	E23 "Early gene at 23" [Drosop	0.768	0.091	0.591	2e-24
DICTYBASE|DDB_G0270826	615	abcG22 "ABC transporter G fami	0.884	0.173	0.456	1.2e-16
TAIR|locus:2144133	751	ABCG22 "ATP-binding cassette G	0.752	0.121	0.468	5.3e-15
TAIR|locus:2016089	662	ABCG25 "ATP-binding casette G2	0.669	0.122	0.433	1.8e-13
FB|FBgn0020762	832	Atet "ABC transporter expresse	0.801	0.116	0.390	6.7e-13
TAIR|locus:2097218	708	ABCG18 "ATP-binding cassette G	0.685	0.117	0.459	8.7e-13
UNIPROTKB|C9JKD9	257	ABCG1 "ATP-binding cassette su	0.669	0.315	0.421	2.4e-12
CGD|CAL0003382	1499	CDR2 [Candida albicans (taxid:	0.719	0.058	0.446	2.7e-12
UNIPROTKB|P78595	1499	CDR2 "Multidrug resistance pro	0.719	0.058	0.446	2.7e-12
CGD|CAL0002254	579	orf19.3120 [Candida albicans (	0.743	0.155	0.45	2.8e-12

FB|FBgn0020445 E23 "Early gene at 23" [Drosophila melanogaster (taxid:7227)]

 Score = 291 (107.5 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 55/93 (59%), Positives = 75/93 (80%)

Query:    20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
             L+L F  L+V  ++R IL DVSG V P E+LA+MGPSG GKTTLL+CL+G+  +DSG + 
Sbjct:   351 LQLTFQNLNVLHNERQILSDVSGFVSPCEVLAIMGPSGSGKTTLLDCLSGQRHIDSGSVF 410

Query:    80 LNKERLNKRWKRKICYVLQQDIFFPELTLRQTL 112
             LN+E L K+W+R+I YVLQ++IFFP+LTLR+T+
Sbjct:   411 LNREPLTKKWRRRIGYVLQEEIFFPQLTLRETV 443

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS;NAS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=NAS

GO:0005215 "transporter activity" evidence=NAS

GO:0016020 "membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042752 "regulation of circadian rhythm" evidence=IDA;IMP

DICTYBASE|DDB_G0270826 abcG22 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 215 (80.7 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 52/114 (45%), Positives = 71/114 (62%)

Query:     6 PSLPPEKYPLS-HRPLELVFSGL--SVTLDKRP--ILKDVSGVVKPGELLAVMGPSGCGK 60
             P++   K  LS  R L + F  L  SVT+ K+   ILK VSG V PGEL+AV GPSG GK
Sbjct:    14 PTMVKSKSQLSLRRSLTITFKDLAYSVTVKKKKMQILKGVSGTVTPGELVAVFGPSGSGK 73

Query:    61 TTLLNCLAGRVKLD--SGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTL 112
             TTLL+ LA R +    SG + +N   ++  +KR   YV+Q+D+  P +T+R+TL
Sbjct:    74 TTLLDILANRKESGEISGAVLINGNEIDDDYKRLCSYVVQEDVLLPTITVRETL 127

GO:0006928 "cellular component movement" evidence=IGI

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

TAIR|locus:2144133 ABCG22 "ATP-binding cassette G22" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 5.3e-15, P = 5.3e-15
 Identities = 44/94 (46%), Positives = 63/94 (67%)

Query:    21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS--GVI 78
             ++V   L+ +++K  IL  +SG V PGE+LA+MGPSG GKTTLL+ LAGR+   S  G +
Sbjct:   165 KVVIKKLTSSVEKE-ILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRISQSSTGGSV 223

Query:    79 RLNKERLNKRWKRKICYVLQQDIFFPELTLRQTL 112
               N +  +K  K KI +V Q D+ FP LT+++TL
Sbjct:   224 TYNDKPYSKYLKSKIGFVTQDDVLFPHLTVKETL 257

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010148 "transpiration" evidence=IMP

TAIR|locus:2016089 ABCG25 "ATP-binding casette G25" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 36/83 (43%), Positives = 58/83 (69%)

Query:    32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS--GVIRLNKERLNKRW 89
             ++R IL  V+G++ PGE +AV+GPSG GK+TLLN +AGR+   +  G I +N  ++ K+ 
Sbjct:    79 EERTILSGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKITKQT 138

Query:    90 KRKICYVLQQDIFFPELTLRQTL 112
              ++  +V Q D+ +P LT+R+TL
Sbjct:   139 LKRTGFVAQDDLLYPHLTVRETL 161

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0080168 "abscisic acid transport" evidence=IDA

FB|FBgn0020762 Atet "ABC transporter expressed in trachea" [Drosophila melanogaster (taxid:7227)]

 Score = 182 (69.1 bits), Expect = 6.7e-13, P = 6.7e-13
 Identities = 41/105 (39%), Positives = 67/105 (63%)

Query:    19 PLELVFSGLSVTL-DK-----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG-RV 71
             P+++ F  +S ++ D      + ILK VSG  + GE+ A+MGPSG GK+TL+N LAG + 
Sbjct:   142 PVDIEFCDISYSVTDSHRRGFKTILKSVSGKFRNGEITAIMGPSGAGKSTLMNILAGYKT 201

Query:    72 KLDSGVIRLN-KERLNKRWKRKICYVLQQDIFFPELTLRQTLEVS 115
                SG + +N KER  +R+++  CY++Q D+    LT+R+ + V+
Sbjct:   202 AQLSGSVLINSKERNLRRFRKLSCYIMQDDVLIANLTVREAMMVA 246

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

TAIR|locus:2097218 ABCG18 "ATP-binding cassette G18" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 8.7e-13, P = 8.7e-13
 Identities = 40/87 (45%), Positives = 58/87 (66%)

Query:    30 TLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS--GVIRLNKER-LN 86
             T   + +L D++G  + GE+LAV+G SG GK+TL++ LAGRV  DS  G + LN E+ L 
Sbjct:    85 TASVKTLLDDITGEARDGEILAVLGGSGAGKSTLIDALAGRVAEDSLKGTVTLNGEKVLQ 144

Query:    87 KRWKRKI-CYVLQQDIFFPELTLRQTL 112
              R  + I  YV+Q D+ FP LT+++TL
Sbjct:   145 SRLLKVISAYVMQDDLLFPMLTVKETL 171

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

UNIPROTKB|C9JKD9 ABCG1 "ATP-binding cassette sub-family G member 1" [Homo sapiens (taxid:9606)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 35/83 (42%), Positives = 53/83 (63%)

Query:    34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG-RVKLDSGVIRLNKERLNKRWKRK 92
             + +LK +SG    GEL+A+MGPSG GK+TL+N LAG R     G + +N    + R  RK
Sbjct:    98 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGLPRDLRCFRK 157

Query:    93 I-CYVLQQDIFFPELTLRQTLEV 114
             + CY++Q D+  P LT+++ + V
Sbjct:   158 VSCYIMQDDMLLPHLTVQEAMMV 180

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

CGD|CAL0003382 CDR2 [Candida albicans (taxid:5476)]

 Score = 172 (65.6 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
 Identities = 42/94 (44%), Positives = 58/94 (61%)

Query:    27 LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI----RL-N 81
             + +  + R IL  V G VKPG++ A+MG SG GKTTLLNCL+ RV   +G+I    RL N
Sbjct:   866 VKIKKEDRVILDHVDGWVKPGQITALMGASGAGKTTLLNCLSERVT--TGIITDGERLVN 923

Query:    82 KERLNKRWKRKICYVLQQDIFFPELTLRQTLEVS 115
                L+  ++R I YV QQD+     T+R+ L+ S
Sbjct:   924 GHALDSSFQRSIGYVQQQDVHLETTTVREALQFS 957

GO:0045332 "phospholipid translocation" evidence=IGI

GO:0005548 "phospholipid transporter activity" evidence=IGI

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0046618 "drug export" evidence=IMP

GO:0016020 "membrane" evidence=NAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005524 "ATP binding" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0034599 "cellular response to oxidative stress" evidence=IGI

GO:0035690 "cellular response to drug" evidence=IGI;IEP;IMP

GO:0071383 "cellular response to steroid hormone stimulus" evidence=IGI

UNIPROTKB|P78595 CDR2 "Multidrug resistance protein CDR2" [Candida albicans SC5314 (taxid:237561)]

 Score = 172 (65.6 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
 Identities = 42/94 (44%), Positives = 58/94 (61%)

Query:    27 LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI----RL-N 81
             + +  + R IL  V G VKPG++ A+MG SG GKTTLLNCL+ RV   +G+I    RL N
Sbjct:   866 VKIKKEDRVILDHVDGWVKPGQITALMGASGAGKTTLLNCLSERVT--TGIITDGERLVN 923

Query:    82 KERLNKRWKRKICYVLQQDIFFPELTLRQTLEVS 115
                L+  ++R I YV QQD+     T+R+ L+ S
Sbjct:   924 GHALDSSFQRSIGYVQQQDVHLETTTVREALQFS 957

GO:0005215 "transporter activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005548 "phospholipid transporter activity" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=NAS

GO:0016021 "integral to membrane" evidence=ISS

GO:0034599 "cellular response to oxidative stress" evidence=IGI

GO:0035690 "cellular response to drug" evidence=IEP;IGI;IMP

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0045332 "phospholipid translocation" evidence=IGI

GO:0046618 "drug export" evidence=IMP

GO:0071383 "cellular response to steroid hormone stimulus" evidence=IGI

CGD|CAL0002254 orf19.3120 [Candida albicans (taxid:5476)]

 Score = 174 (66.3 bits), Expect = 2.8e-12, P = 2.8e-12
 Identities = 45/100 (45%), Positives = 62/100 (62%)

Query:    24 FSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGV 77
             +S +S+TL   + IL D+ G V  GE+LA+MGPSGCGK+TLLN LA R       L+ G+
Sbjct:     8 WSNISLTLQNGKTILDDIYGSVSAGEMLAIMGPSGCGKSTLLNVLAYRTSPRSSTLEGGI 67

Query:    78 IRLNKER--LNKRWKRKICYVLQQDIFFPELTLRQTLEVS 115
               +N ER  LNK  K+   YV Q+D     LT+ +T++ S
Sbjct:    68 F-INNERATLNKI-KQLSSYVEQEDSLIGSLTVSETVDYS 105

GO:0005524 "ATP binding" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	121
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	2e-35
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	5e-26
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	7e-26
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	2e-25
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	2e-25
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	4e-25
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	2e-24
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	2e-23
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	6e-23
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	4e-22
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	8e-21
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	9e-21
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	2e-20
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	2e-20
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	3e-20
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	4e-20
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	5e-20
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	7e-20
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	2e-19
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	9e-19
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	9e-19
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	1e-18
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	1e-17
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	1e-17
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	1e-17
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	2e-17
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	2e-17
COG4987	573	COG4987, CydC, ABC-type transport system involved	2e-17
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	3e-17
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	1e-16
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	1e-16
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	1e-16
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	2e-16
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	2e-16
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	5e-16
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	8e-16
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	1e-15
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	1e-15
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	2e-15
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	2e-15
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	3e-15
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	5e-15
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	5e-15
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	6e-15
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	6e-15
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	8e-15
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	1e-14
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	1e-14
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	1e-14
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	1e-14
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	2e-14
COG4988	559	COG4988, CydD, ABC-type transport system involved	2e-14
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	3e-14
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	3e-14
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	4e-14
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	5e-14
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	5e-14
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	6e-14
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	6e-14
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	9e-14
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	2e-13
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	3e-13
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	3e-13
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	3e-13
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	4e-13
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	4e-13
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	5e-13
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	1e-12
COG1123	539	COG1123, COG1123, ATPase components of various ABC	1e-12
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	1e-12
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	3e-12
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	4e-12
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	5e-12
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	7e-12
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	8e-12
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	8e-12
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	9e-12
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	1e-11
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	1e-11
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	2e-11
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	2e-11
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	2e-11
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	2e-11
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	2e-11
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	2e-11
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	2e-11
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	3e-11
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	3e-11
COG1123	539	COG1123, COG1123, ATPase components of various ABC	4e-11
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	4e-11
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	4e-11
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	4e-11
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	4e-11
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	5e-11
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	5e-11
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	5e-11
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	6e-11
COG4133	209	COG4133, CcmA, ABC-type transport system involved	6e-11
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	6e-11
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	6e-11
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	1e-10
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	1e-10
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	1e-10
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	2e-10
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	2e-10
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	2e-10
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	2e-10
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	3e-10
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	3e-10
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	4e-10
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	5e-10
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	6e-10
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	6e-10
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	8e-10
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	8e-10
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	1e-09
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	1e-09
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	1e-09
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	1e-09
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	1e-09
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	1e-09
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	2e-09
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	2e-09
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	2e-09
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	2e-09
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	2e-09
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	2e-09
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	2e-09
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	2e-09
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	3e-09
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	3e-09
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	3e-09
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	3e-09
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	3e-09
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	3e-09
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	4e-09
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	5e-09
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	7e-09
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	7e-09
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	9e-09
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	9e-09
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	1e-08
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	2e-08
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	2e-08
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	2e-08
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	2e-08
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	2e-08
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	2e-08
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	2e-08
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	2e-08
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	2e-08
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	3e-08
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	3e-08
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	3e-08
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	3e-08
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	3e-08
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	3e-08
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	3e-08
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	4e-08
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	4e-08
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	5e-08
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	5e-08
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	6e-08
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	7e-08
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	7e-08
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	7e-08
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	7e-08
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	8e-08
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	8e-08
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	8e-08
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	9e-08
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	9e-08
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	1e-07
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	1e-07
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	2e-07
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	2e-07
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	3e-07
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	3e-07
COG5265	497	COG5265, ATM1, ABC-type transport system involved	3e-07
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	3e-07
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	3e-07
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	4e-07
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	4e-07
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	4e-07
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	5e-07
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	7e-07
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	8e-07
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	8e-07
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	8e-07
smart00382	148	smart00382, AAA, ATPases associated with a variety	9e-07
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	9e-07
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	1e-06
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	1e-06
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	1e-06
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	2e-06
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	2e-06
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	2e-06
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	2e-06
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	3e-06
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	3e-06
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	3e-06
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	3e-06
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	4e-06
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	4e-06
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	4e-06
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	4e-06
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	4e-06
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	5e-06
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	5e-06
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	5e-06
pfam00005	119	pfam00005, ABC_tran, ABC transporter	6e-06
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	6e-06
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	7e-06
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	7e-06
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	8e-06
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	1e-05
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	1e-05
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	1e-05
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	1e-05
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	1e-05
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	1e-05
PRK01889	356	PRK01889, PRK01889, GTPase RsgA; Reviewed	1e-05
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	2e-05
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	3e-05
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	3e-05
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	3e-05
COG4598	256	COG4598, HisP, ABC-type histidine transport system	3e-05
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	4e-05
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	4e-05
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	4e-05
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	4e-05
pfam03193	161	pfam03193, DUF258, Protein of unknown function, DU	4e-05
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	5e-05
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	5e-05
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	5e-05
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	5e-05
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	6e-05
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	6e-05
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	7e-05
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	9e-05
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	9e-05
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	1e-04
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	1e-04
cd01854	211	cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y	1e-04
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	1e-04
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	2e-04
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	2e-04
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	2e-04
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	2e-04
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	2e-04
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	2e-04
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	2e-04
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	2e-04
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	2e-04
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	2e-04
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	3e-04
COG1162	301	COG1162, COG1162, Predicted GTPases [General funct	3e-04
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	3e-04
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	3e-04
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	3e-04
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	4e-04
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	4e-04
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	4e-04
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	4e-04
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	5e-04
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	5e-04
PRK13342	413	PRK13342, PRK13342, recombination factor protein R	5e-04
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	5e-04
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	5e-04
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	5e-04
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	5e-04
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	5e-04
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	5e-04
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	6e-04
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	6e-04
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	7e-04
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	7e-04
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	7e-04
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	7e-04
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	8e-04
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	8e-04
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	8e-04
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	8e-04
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	8e-04
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	8e-04
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	9e-04
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	0.001
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	0.001
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	0.001
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	0.001
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	0.001
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	0.001
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	0.001
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	0.001
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	0.001
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	0.001
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	0.001
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	0.001
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	0.001
pfam13481	154	pfam13481, AAA_25, AAA domain	0.001
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	0.001
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	0.002
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	0.002
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	0.002
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	0.002
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	0.002
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	0.002
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	0.002
cd03289	275	cd03289, ABCC_CFTR2, ATP-binding cassette domain 2	0.002
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	0.002
pfam10662	143	pfam10662, PduV-EutP, Ethanolamine utilisation - p	0.004
cd01882	231	cd01882, BMS1, Bms1, an essential GTPase, promotes	0.004
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	0.004
COG0194	191	COG0194, Gmk, Guanylate kinase [Nucleotide transpo	0.004
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	0.004

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score =  119 bits (301), Expect = 2e-35
 Identities = 49/106 (46%), Positives = 66/106 (62%), Gaps = 9/106 (8%)

Query: 19  PLELVFSGLSVTLD------KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK 72
            + L F  L+VT+        + +LK+VSG  KPGEL A+MGPSG GK+TLLN LAGR  
Sbjct: 1   GVTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRT 60

Query: 73  L--DSGVIRLNKERLNKR-WKRKICYVLQQDIFFPELTLRQTLEVS 115
               SG + +N   L+KR +++ I YV Q DI  P LT+R+TL  +
Sbjct: 61  GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFA 106

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 98.1 bits (245), Expect = 5e-26
 Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRW-- 89
             +  L  VS  V+PGE+  ++GP+G GKTTLL  LAG +K  SG I +    + K    
Sbjct: 16  GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAK 75

Query: 90  -KRKICYVLQQDIFFPELTLRQTLE 113
            +R+I YV Q+   +PELT+R+ LE
Sbjct: 76  VRRRIGYVPQEPSLYPELTVRENLE 100

Length = 293

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 95.4 bits (238), Expect = 7e-26
 Identities = 46/105 (43%), Positives = 62/105 (59%), Gaps = 10/105 (9%)

Query: 19  PLELVFSGLSVTLD----KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD 74
              L +  L+ T+     KR +L ++SG VKPG L A+MG SG GKTTLL+ LAGR    
Sbjct: 1   GSVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRK--T 58

Query: 75  SGVIR----LNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVS 115
           +GVI     +N   L+K ++R   YV QQD+  P LT+R+ L  S
Sbjct: 59  AGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFS 103

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 99.4 bits (248), Expect = 2e-25
 Identities = 43/84 (51%), Positives = 53/84 (63%), Gaps = 4/84 (4%)

Query: 36  ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD---SGVIRLNKERLNKRWKRK 92
           +LK+VSGV KPGELLAVMG SG GKTTL+N LA R       SG + LN   ++ +  R 
Sbjct: 40  LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99

Query: 93  IC-YVLQQDIFFPELTLRQTLEVS 115
           I  YV Q D+F P LT+R+ L   
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQ 123

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 94.5 bits (236), Expect = 2e-25
 Identities = 39/93 (41%), Positives = 52/93 (55%), Gaps = 2/93 (2%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           L   GLS T      L D+S  V+PGE LA++GPSGCGKTTLL  +AG  + DSG I ++
Sbjct: 1   LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60

Query: 82  KERLNKR--WKRKICYVLQQDIFFPELTLRQTL 112
              +      +R I  V Q    FP LT+ + +
Sbjct: 61  GRDVTGVPPERRNIGMVFQDYALFPHLTVAENI 93

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 98.3 bits (245), Expect = 4e-25
 Identities = 49/105 (46%), Positives = 60/105 (57%), Gaps = 17/105 (16%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI----RL-NKERLN 86
           +KR IL +V G VKPG L A+MG SG GKTTLLN LA RV   +GVI    RL N   L+
Sbjct: 774 EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERV--TTGVITGGDRLVNGRPLD 831

Query: 87  KRWKRKICYVLQQDIFFPELT----------LRQTLEVSIADEDE 121
             ++R I YV QQD+  P  T          LRQ   VS +++ E
Sbjct: 832 SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKME 876

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 90.9 bits (227), Expect = 2e-24
 Identities = 33/97 (34%), Positives = 57/97 (58%), Gaps = 3/97 (3%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           +    LS    K+  L D+S  V+ GE+  ++GP+G GKTTL+  + G +K DSG I++ 
Sbjct: 1   IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60

Query: 82  KERLNKRW---KRKICYVLQQDIFFPELTLRQTLEVS 115
            + + K     KR+I Y+ ++   +  LT+R+ L++S
Sbjct: 61  GKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLS 97

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 92.0 bits (229), Expect = 2e-23
 Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           L    +S +      + D+S  +K GE + ++GPSGCGKTTLL  +AG  +  SG I L+
Sbjct: 6   LEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLD 65

Query: 82  KERLNKR--WKRKICYVLQQDIFFPELTLRQ 110
            E +      KR I  V Q    FP +T+ +
Sbjct: 66  GEDITDVPPEKRPIGMVFQSYALFPHMTVEE 96

Length = 352

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 88.5 bits (220), Expect = 6e-23
 Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 4/101 (3%)

Query: 16  SHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV---K 72
              P   V            IL DVS  V+ G+++A++G SG GKTTLL+ ++GRV    
Sbjct: 2   RVLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGG 61

Query: 73  LDSGVIRLNKERLNK-RWKRKICYVLQQDIFFPELTLRQTL 112
             SG I  N +     ++++ + YV Q DI  P LT+R+TL
Sbjct: 62  TTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETL 102

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 85.8 bits (213), Expect = 4e-22
 Identities = 38/93 (40%), Positives = 57/93 (61%), Gaps = 6/93 (6%)

Query: 30  TLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD---SGVIRLN---KE 83
              K PILKD SGVVKPGE++ V+G  G G +TLL  LA R + +    G I  N    +
Sbjct: 16  GRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYK 75

Query: 84  RLNKRWKRKICYVLQQDIFFPELTLRQTLEVSI 116
              +++  +I YV ++D+ FP LT+R+TL+ ++
Sbjct: 76  EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFAL 108

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 86.1 bits (213), Expect = 8e-21
 Identities = 40/90 (44%), Positives = 60/90 (66%), Gaps = 2/90 (2%)

Query: 25  SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS--GVIRLNK 82
           S  +  + +R IL  V+G+  PGE+LAV+GPSG GK+TLLN LAGR++ ++  G I  N 
Sbjct: 72  SDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN 131

Query: 83  ERLNKRWKRKICYVLQQDIFFPELTLRQTL 112
            +  K+  ++  +V Q DI +P LT+R+TL
Sbjct: 132 RKPTKQILKRTGFVTQDDILYPHLTVRETL 161

Length = 659

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 82.6 bits (205), Expect = 9e-21
 Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 24  FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE 83
              L+V+    P+L+DVS  VKPGE LA++GP+G GK+TLL  + G +K  SG IR+  +
Sbjct: 2   VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK 61

Query: 84  RLNKRWKRKICYVLQQDIF---FP 104
            L K  KR I YV Q+      FP
Sbjct: 62  PLEKERKR-IGYVPQRRSIDRDFP 84

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 81.3 bits (202), Expect = 2e-20
 Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 4/78 (5%)

Query: 25 SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84
            LSV    R +L D+S  ++ GE++ ++GP+G GK+TLL  LAG +K  SG I L+ + 
Sbjct: 3  ENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKD 62

Query: 85 LN----KRWKRKICYVLQ 98
          L     K   RKI YV Q
Sbjct: 63 LASLSPKELARKIAYVPQ 80

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 82.6 bits (205), Expect = 2e-20
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 1/89 (1%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           L   G+S +     +L+D++  V+ GE +A++GPSGCGK+TLL  +AG  K  SG + L+
Sbjct: 4   LEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLD 63

Query: 82  KERLNKRWKRKICYVLQQDIFFPELTLRQ 110
              +       I YV Q+D   P LT+  
Sbjct: 64  GRPVTGP-GPDIGYVFQEDALLPWLTVLD 91

Length = 248

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 82.2 bits (204), Expect = 3e-20
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           L    LS     +PIL D+S  +  GE+  ++GP+G GK+TLL CLAG +K  SG + L+
Sbjct: 3   LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLD 62

Query: 82  KERLN----KRWKRKICYVLQQDIFFPELT 107
            + +     K   +K+ YV Q       LT
Sbjct: 63  GKDIASLSPKELAKKLAYVPQSPSAPFGLT 92

Length = 258

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 81.0 bits (201), Expect = 4e-20
 Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 10/92 (10%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN---------K 82
           +K   LKDV+  ++ GE +A++GPSG GK+TLLN L G  K  SG + +N         K
Sbjct: 16  EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEK 75

Query: 83  ERLNKRWKRKICYVLQQDIFFPELTLRQTLEV 114
           E    R ++KI +V Q     P+LT+ + +E+
Sbjct: 76  ELAKLR-RKKIGFVFQNFNLLPDLTVLENVEL 106

Length = 226

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 79.2 bits (196), Expect = 5e-20
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 24 FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE 83
             LS     R  L +VS  +K GE++A++GP+G GK+TLL  +AG +K  SG I ++ +
Sbjct: 2  IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGK 61

Query: 84 RLNK----RWKRKICYVLQ 98
           + K      +R+I YV Q
Sbjct: 62 DIAKLPLEELRRRIGYVPQ 80

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 82.3 bits (204), Expect = 7e-20
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 21  ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
           EL    +  +     +LKDV+  ++ GE + ++GPSGCGK+TLL  +AG  +  SG I +
Sbjct: 3   ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILI 62

Query: 81  NKERLNKR--WKRKICYVLQQDIFFPELTLRQ 110
           +   +      KR I  V Q    +P +T+ +
Sbjct: 63  DGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94

Length = 338

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 78.0 bits (193), Expect = 2e-19
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 6/95 (6%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           L    +S    ++ +L DVS  ++ GE++A++GPSG GK+TLL C+AG  + DSG I ++
Sbjct: 1   LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60

Query: 82  KERLN------KRWKRKICYVLQQDIFFPELTLRQ 110
            E L          +R+I  V Q    FP LT+ +
Sbjct: 61  GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLE 95

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 77.5 bits (192), Expect = 9e-19
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 35  PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKIC 94
             L+D+S  V+ GE +A++GPSGCGK+TLL  +AG  +  SG + ++ E +         
Sbjct: 18  TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGP-GPDRG 76

Query: 95  YVLQQDIFFPELTLRQ 110
           YV QQD   P LT+  
Sbjct: 77  YVFQQDALLPWLTVLD 92

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 80.0 bits (198), Expect = 9e-19
 Identities = 39/102 (38%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 8   LPPEKYPLSHRPLELVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNC 66
           L  +    +     L FSG+SV    +RP L+ VS  V PGE +A++GPSG GK+TLLN 
Sbjct: 308 LAGKAPVTAAPAPSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNL 367

Query: 67  LAGRVKLDSGVIRLNKERLN----KRWKRKICYVLQQDIFFP 104
           L G V    G I +N   L       W+ +I +V Q    F 
Sbjct: 368 LLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFA 409

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 77.5 bits (192), Expect = 1e-18
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 5/98 (5%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           L    LS    K   L+ VS  V+ GE++A++G +G GKTTLL  + G V+  SG I  +
Sbjct: 4   LEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFD 63

Query: 82  KERLN-----KRWKRKICYVLQQDIFFPELTLRQTLEV 114
            E +      +R +  I YV +    FP LT+ + L +
Sbjct: 64  GEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLL 101

Length = 237

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 75.3 bits (186), Expect = 1e-17
 Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 5/98 (5%)

Query: 19  PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
              +    L+V+   RP+L+D+S  V+ GE+ A++GP+G GK+TLL  + G +K  SG I
Sbjct: 2   MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61

Query: 79  RLN-KERLNKRWKRKICYVLQQDIF---FPELTLRQTL 112
           ++  K    +R + +I YV Q+      FP +T++  +
Sbjct: 62  KIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVV 98

Length = 254

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 73.6 bits (182), Expect = 1e-17
 Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 5/93 (5%)

Query: 22  LVFSGLSVTLD--KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
           + F  +S +     +P+LKDVS  +KPGE +A++GPSG GK+TLL  L       SG I 
Sbjct: 1   IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60

Query: 80  LNK---ERLNKRWKRKICYVLQQDIFFPELTLR 109
           ++      L+    RK    + QD F    T+R
Sbjct: 61  IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIR 93

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 74.4 bits (184), Expect = 1e-17
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 13/103 (12%)

Query: 23  VFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
               LS +     RP L D+S  +K GE + ++GP+G GK+TLL  L G +   SG + +
Sbjct: 1   ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60

Query: 81  NKERLN----KRWKRKICYVLQQDIFFPELTLRQTLEVSIADE 119
           + + L     K  +RK+  V Q     P+    Q    ++ +E
Sbjct: 61  DGKDLTKLSLKELRRKVGLVFQ----NPD---DQFFGPTVEEE 96

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 74.5 bits (184), Expect = 2e-17
 Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 7/94 (7%)

Query: 24  FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE 83
             GL+ +   R +LK V   V+ GE+LA++GPSG GK+TLL  + G ++ DSG + ++ E
Sbjct: 3   LRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGE 62

Query: 84  RLNK-------RWKRKICYVLQQDIFFPELTLRQ 110
            ++        R +R++  + Q    F  LT+ +
Sbjct: 63  DISGLSEAELYRLRRRMGMLFQSGALFDSLTVFE 96

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 75.0 bits (185), Expect = 2e-17
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 4/91 (4%)

Query: 24  FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE 83
           F  +S     +  + DV+  ++ GE L ++GPSG GKTT L  +   ++  SG I ++ E
Sbjct: 4   FENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGE 63

Query: 84  RLNK----RWKRKICYVLQQDIFFPELTLRQ 110
            ++       +RKI YV+QQ   FP LT+ +
Sbjct: 64  DISDLDPVELRRKIGYVIQQIGLFPHLTVAE 94

Length = 309

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 75.8 bits (187), Expect = 2e-17
 Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 11/121 (9%)

Query: 2   VSNIPSLPPEK----YPLSHRPLELVFSGLSVTLD--KRPILKDVSGVVKPGELLAVMGP 55
           +++I    PE        +     L    +S T    +   LK+ +  +  GE +A++G 
Sbjct: 313 LNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGR 372

Query: 56  SGCGKTTLLNCLAGRVKLDSGVIRLN----KERLNKRWKRKICYVLQQDIFFPELTLRQT 111
           SG GK+TLL  LAG      G I LN         +  +  I  + Q+   F   TLR  
Sbjct: 373 SGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDN 431

Query: 112 L 112
           L
Sbjct: 432 L 432

Length = 573

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 73.7 bits (182), Expect = 3e-17
 Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 14/106 (13%)

Query: 22  LVFSGLSVTLD----KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV 77
           +    LS T      K   LK VS  ++ GE +A++GPSG GK+TLLN L G  +  SG 
Sbjct: 1   IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60

Query: 78  IRLN---------KERLNKRWKRKICYVLQQDIFFPELTLRQTLEV 114
           +R++         KE    R +R I +V Q     P+LT  + +E+
Sbjct: 61  VRVDGTDISKLSEKELAAFR-RRHIGFVFQSFNLLPDLTALENVEL 105

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 74.4 bits (183), Expect = 1e-16
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 9/109 (8%)

Query: 18  RPLELVFSGL--SVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV---- 71
           + L   F  L          ILK + G++KPGEL  V+G  G G +TLL  +A       
Sbjct: 56  KILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFH 115

Query: 72  KLDSGVIRLN---KERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSIA 117
               GVI  +    E + K ++  + Y  + D+ FP LT+ +TL+ +  
Sbjct: 116 IGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAAR 164

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 72.1 bits (178), Expect = 1e-16
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 7/100 (7%)

Query: 20  LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
           LE+    L+    K  IL  VS  V  GE++A++G +G GKTTLL  + G +   SG IR
Sbjct: 1   LEV--ENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58

Query: 80  LNKERLN-----KRWKRKICYVLQQDIFFPELTLRQTLEV 114
            +   +      +R +  I YV +    FPELT+ + L +
Sbjct: 59  FDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLL 98

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 72.5 bits (178), Expect = 1e-16
 Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 22  LVFSGLSVTLDKRP--ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
           L  S LS++ + +P   L+DVS  +  GEL+ V+GPSGCGKTTLLN +AG V    G I+
Sbjct: 4   LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQ 63

Query: 80  LNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSIA 117
           LN  R+      +   V Q +   P L +   +   + 
Sbjct: 64  LNGRRIEGPGAER-GVVFQNEALLPWLNVIDNVAFGLQ 100

Length = 259

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 71.8 bits (177), Expect = 2e-16
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---KR 88
             +P + D+S  V  GE+  ++G +G GKTT L  L G ++  SG   +N   +    K 
Sbjct: 13  GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKA 72

Query: 89  WKRKICYVLQQDIFFPELTLRQTLE 113
            ++ + Y  Q D  F ELT+R+ L 
Sbjct: 73  ARQSLGYCPQFDALFDELTVREHLR 97

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 72.8 bits (179), Expect = 2e-16
 Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 5/96 (5%)

Query: 20  LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
           + +  + +         L D+S  +K GEL+A++GPSG GK+TLL  +AG    D+G IR
Sbjct: 1   MSIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60

Query: 80  LNKERL----NKR-WKRKICYVLQQDIFFPELTLRQ 110
           LN   L    N     RK+ +V Q    FP +T+  
Sbjct: 61  LNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVAD 96

Length = 345

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 69.6 bits (171), Expect = 5e-16
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 6/89 (6%)

Query: 22  LVFSGLSVTL--DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
           L    +S      + P+L++VS  ++PGE LA++GPSG GK+TL   + G ++  SG +R
Sbjct: 1   LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60

Query: 80  LNKERLNK----RWKRKICYVLQQDIFFP 104
           L+   +++         + Y+ Q D  F 
Sbjct: 61  LDGADISQWDPNELGDHVGYLPQDDELFS 89

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 70.2 bits (173), Expect = 8e-16
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 5/83 (6%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL-----NKRWKR 91
           L DVS  V+PGE+  ++GP+G GKTTL N ++G ++  SG +  + E +     ++  + 
Sbjct: 16  LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75

Query: 92  KICYVLQQDIFFPELTLRQTLEV 114
            I    Q    FPELT+ + + V
Sbjct: 76  GIGRTFQIPRLFPELTVLENVMV 98

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 67.9 bits (167), Expect = 1e-15
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
          +    LS T   + +LKD+S  + PG+ + ++G +G GK+TLL  +AG ++ D G++   
Sbjct: 1  IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60

Query: 82 KERLNKRWKRKICYVLQ 98
                    KI Y  Q
Sbjct: 61 S-------TVKIGYFEQ 70

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 69.6 bits (171), Expect = 1e-15
 Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           +    +S        L  VS  +K GE   ++GPSGCGKTTLL  +AG     SG I L+
Sbjct: 1   IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60

Query: 82  KERLNK--RWKRKICYVLQQDIFFPELT 107
            + +      KR +  V Q    FP LT
Sbjct: 61  GKDITNLPPHKRPVNTVFQNYALFPHLT 88

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 70.7 bits (174), Expect = 2e-15
 Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 12/114 (10%)

Query: 2   VSNIPSLPPE------KYPLSHRPLELVFSGLSVTL--DKRPILKDVSGVVKPGELLAVM 53
           + +I   PPE         L     E+ F  +S     D  P+L+D+S  + PGE +A++
Sbjct: 446 LGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIV 505

Query: 54  GPSGCGKTTLLNCLAGRVKLDSGVIRLN---KERLNKRW-KRKICYVLQQDIFF 103
           G SG GK+TLL  L G  K   G I L+      ++    +R++ YVLQ    F
Sbjct: 506 GRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF 559

Length = 709

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 69.0 bits (169), Expect = 2e-15
 Identities = 29/65 (44%), Positives = 40/65 (61%)

Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
          L  S L      +P L+D++  ++ GELL V+GPSGCGKTTLLN +AG V    G I L+
Sbjct: 2  LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD 61

Query: 82 KERLN 86
           + + 
Sbjct: 62 GKPVE 66

Length = 255

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 68.3 bits (168), Expect = 3e-15
 Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 7/85 (8%)

Query: 36  ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWK 90
           IL+ VS  V  GE+  V+G +G GKTTLL  L G + + SG IRL+ E + K     R +
Sbjct: 15  ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74

Query: 91  RKICYVLQ-QDIFFPELTLRQTLEV 114
             I YV Q ++I FP LT+ + L  
Sbjct: 75  AGIAYVPQGREI-FPRLTVEENLLT 98

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 68.4 bits (168), Expect = 5e-15
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 12/96 (12%)

Query: 24  FSGLSVT-LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNK 82
              LS T       LKDV+  +  GE++A++GPSG GK+TLL  L G V   SG I  N 
Sbjct: 6   VKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNG 65

Query: 83  ERLNK-------RWKRKICYVLQQDIFFPELTLRQT 111
            ++ K       + +R I  + QQ      L  R +
Sbjct: 66  VQITKLKGKELRKLRRDIGMIFQQ----FNLVPRLS 97

Length = 258

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 67.9 bits (167), Expect = 5e-15
 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 5/89 (5%)

Query: 24  FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE 83
              LS +   + +LK +S  V+ GE++ ++GPSG GK+TLL CL G  + DSG I ++ E
Sbjct: 5   IKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGE 64

Query: 84  RLN-----KRWKRKICYVLQQDIFFPELT 107
            +       + +RK+  V QQ   FP LT
Sbjct: 65  DVGDKKDILKLRRKVGMVFQQFNLFPHLT 93

Length = 240

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 67.9 bits (167), Expect = 6e-15
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 25 SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
            LSV L  R +L DVS  ++PGE++A++GP+G GK+TLL  L+G +  DSG +RLN
Sbjct: 6  RNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLN 62

Length = 258

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 67.2 bits (165), Expect = 6e-15
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 6/88 (6%)

Query: 26  GLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85
            L  +     +LK +   VK GE++ ++GPSG GK+TLL C+    + DSG I ++  +L
Sbjct: 5   NLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKL 64

Query: 86  NKRWK------RKICYVLQQDIFFPELT 107
               K      +K+  V QQ   FP LT
Sbjct: 65  TDDKKNINELRQKVGMVFQQFNLFPHLT 92

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 66.9 bits (164), Expect = 8e-15
 Identities = 31/76 (40%), Positives = 37/76 (48%), Gaps = 8/76 (10%)

Query: 46  PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWK--------RKICYVL 97
             E+  + G SG GK+TLL C+AG  K D G I LN   L    K        RKI  V 
Sbjct: 22  NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81

Query: 98  QQDIFFPELTLRQTLE 113
           QQ   FP L +R+ L 
Sbjct: 82  QQYALFPHLNVRENLA 97

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 67.2 bits (165), Expect = 1e-14
 Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 8/86 (9%)

Query: 22 LVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
          +    LS T  + +  LKDVS  + PGE +A++GPSG GK+TLL CL G V+  SG + +
Sbjct: 1  IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60

Query: 81 NKERLNK-------RWKRKICYVLQQ 99
          +   +NK       + +R+I  + QQ
Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQ 86

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 67.0 bits (164), Expect = 1e-14
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 20  LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
           + +    +S        L DVS  +  GEL+A++GPSG GKTTLL  +AG  + DSG I 
Sbjct: 1   MSIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60

Query: 80  LNKERLNKR--WKRKICYVLQQDIFFPELTLRQ 110
              E        +R + +V Q    F  +T+  
Sbjct: 61  FGGEDATDVPVQERNVGFVFQHYALFRHMTVFD 93

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 24  FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE 83
             G+S + D + ++ ++   +  GE L ++GPSGCGKTT+L  +AG    DSG I L+ +
Sbjct: 17  LRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQ 76

Query: 84  RLNK--RWKRKICYVLQQDIFFPELTLRQ 110
            +       R +  V Q    FP +T+ +
Sbjct: 77  DITHVPAENRHVNTVFQSYALFPHMTVFE 105

Length = 375

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 68.3 bits (167), Expect = 1e-14
 Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 9/117 (7%)

Query: 5   IPSLPPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLL 64
           +P+LP     ++   L ++   L+    K  ILKD SG++KP  +  ++GP   GKTTLL
Sbjct: 150 LPTLPNAARNIAESALGMLGINLAKK-TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLL 208

Query: 65  NCLAGRVKLD-----SGVIRLNKERLNKRWKRKI-CYVLQQDIFFPELTLRQTLEVS 115
             LAG  KLD     SG I  N  RLN+   RK   Y+ Q D+    +T+++TL+ S
Sbjct: 209 LALAG--KLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFS 263

Length = 1470

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 66.5 bits (163), Expect = 2e-14
 Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 5/96 (5%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           LV   L+ +  KR ++ DVS  V  GE++ ++GP+G GKTT    + G V+ DSG I L+
Sbjct: 5   LVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLD 64

Query: 82  KER-----LNKRWKRKICYVLQQDIFFPELTLRQTL 112
            E      ++KR +  I Y+ Q+   F +LT+   +
Sbjct: 65  DEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNI 100

Length = 243

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 19  PLELVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV 77
           P+E+    LS    D +P L D++  +K G+L A++G SG GK+TLLN L G +    G 
Sbjct: 318 PIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGE 377

Query: 78  IRLN-KERLN---KRWKRKICYVLQQDIFFP 104
           IR+N  +  +   + W+++I +V Q    F 
Sbjct: 378 IRVNGIDLRDLSPEAWRKQISWVSQNPYLFA 408

Length = 559

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 65.6 bits (160), Expect = 3e-14
 Identities = 32/101 (31%), Positives = 58/101 (57%), Gaps = 5/101 (4%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD---SGVI 78
           L    +S+ L    +L +V+  +  GE++ +MGPSGCGK+TLL+ + G +      +G +
Sbjct: 3   LCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGEL 62

Query: 79  RLNKERLNK--RWKRKICYVLQQDIFFPELTLRQTLEVSIA 117
            LN++RL+     +R+I  + Q  + FP L++ Q L  ++ 
Sbjct: 63  WLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALP 103

Length = 213

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 66.0 bits (161), Expect = 3e-14
 Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 4/79 (5%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE---RLNKRWKRKI 93
           L DV+  V  G L+A++GPSG GK+TLL  +AG  + DSG IRLN +   R++ R  RKI
Sbjct: 16  LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR-DRKI 74

Query: 94  CYVLQQDIFFPELTLRQTL 112
            +V Q    F  LT+R  +
Sbjct: 75  GFVFQHYALFKHLTVRDNI 93

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 66.8 bits (164), Expect = 4e-14
 Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 17  HRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG 76
           HR   L    L+   D  P+ K+++ +++ GE LA++G +G GKTTLL  L G ++ DSG
Sbjct: 316 HR-NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG 374

Query: 77  VIR 79
            ++
Sbjct: 375 TVK 377

Length = 530

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 65.7 bits (161), Expect = 5e-14
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 7/93 (7%)

Query: 24  FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN-- 81
             G++ +   R IL  V   V  GE+LA++G SG GK+TLL  + G ++ D G I ++  
Sbjct: 11  VRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGE 70

Query: 82  -----KERLNKRWKRKICYVLQQDIFFPELTLR 109
                 E      ++++  + QQ   F  LT+ 
Sbjct: 71  DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVF 103

Length = 263

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 65.0 bits (159), Expect = 5e-14
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           +    ++        L D++  +  GE + ++GPSGCGKTT L  +AG  +  SG I + 
Sbjct: 1   VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60

Query: 82  KERLNKR--WKRKICYVLQQDIFFPELTLRQT----LEVSIADEDE 121
              +       R I  V Q    +P +T+       L++    +DE
Sbjct: 61  GRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDE 106

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 64.9 bits (159), Expect = 6e-14
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 4/76 (5%)

Query: 33  KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN----KERLNKR 88
           K+P+LKD++  +KPGE +A++GP+G GKTTL+N L        G I ++    ++   K 
Sbjct: 15  KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKS 74

Query: 89  WKRKICYVLQQDIFFP 104
            +  I  VLQ    F 
Sbjct: 75  LRSMIGVVLQDTFLFS 90

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 64.8 bits (159), Expect = 6e-14
 Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 22 LVFSGLSVTLDKR----PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV 77
          L    LSV+          L DVS  +K GE L ++G SG GK+TL   + G +K  SG 
Sbjct: 2  LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61

Query: 78 IRLN-------KERLNKRWKRKICYVLQ 98
          I  +         RL K  +++I  V Q
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQ 89

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 64.5 bits (158), Expect = 9e-14
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 5/96 (5%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           L    LS    KR ++  VS  VK GE++ ++GP+G GKTT    + G VK DSG I L+
Sbjct: 1   LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60

Query: 82  KERL-----NKRWKRKICYVLQQDIFFPELTLRQTL 112
            + +     +KR +  I Y+ Q+   F +LT+ + +
Sbjct: 61  GQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENI 96

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 13/103 (12%)

Query: 26  GLSVTLDKR----PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
            LS+           L +VS  ++ GE L ++G SG GK+TL   LAG  K  SG I L+
Sbjct: 8   NLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLD 67

Query: 82  -KERLNKRWKRKICYVLQ---QDIFFPELTL--RQTLEVSIAD 118
            K    K+  +     +Q   QD   P  +L  R+T+   +++
Sbjct: 68  GKPLAPKKRAKAFYRPVQMVFQD---PYSSLNPRRTVGRILSE 107

Length = 252

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 63.4 bits (155), Expect = 3e-13
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 2/63 (3%)

Query: 27 LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR--VKLDSGVIRLNKER 84
          L V+++ + ILK V+  VK GE+ A+MGP+G GK+TL   +AG    ++ SG I    + 
Sbjct: 6  LHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQD 65

Query: 85 LNK 87
          L +
Sbjct: 66 LLE 68

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 33/75 (44%), Positives = 41/75 (54%), Gaps = 4/75 (5%)

Query: 36  ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE---RLNKRWKRK 92
            LKD+S  VK GE + ++GPSGCGKTTLL  +AG  +  +G I        RL  + KR 
Sbjct: 19  ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ-KRD 77

Query: 93  ICYVLQQDIFFPELT 107
              V Q    FP LT
Sbjct: 78  YGIVFQSYALFPNLT 92

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 63.1 bits (154), Expect = 3e-13
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 10/87 (11%)

Query: 22 LVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI-- 78
          L    LS    + +  LK+++  + PGE +A++GPSG GK+TLL C+   V+  SG I  
Sbjct: 2  LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61

Query: 79 ------RLNKERLNKRWKRKICYVLQQ 99
                +L  ++L K  +R+I  + Q 
Sbjct: 62 EGTDITKLRGKKLRK-LRRRIGMIFQH 87

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 62.4 bits (152), Expect = 4e-13
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 26  GLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85
            L+ +  +R + + +S  +  GE L V GP+G GKTTLL  LAG ++ DSG +R N   L
Sbjct: 5   NLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL 64

Query: 86  NKR---WKRKICYVLQQDIFFPELTLRQTL 112
            ++     R I Y+       PEL+  + L
Sbjct: 65  AEQRDEPHRNILYLGHLPGLKPELSALENL 94

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 62.3 bits (152), Expect = 4e-13
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 6/84 (7%)

Query: 36  ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICY 95
           IL D+S  +  GE++A+ G +G GKTTL   LAG +K  SG I LN + +  + +RK   
Sbjct: 15  ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG 74

Query: 96  VLQQDIFFPELTLRQTLEVSIADE 119
            + QD         Q    S+ +E
Sbjct: 75  YVMQD------VDYQLFTDSVREE 92

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 63.5 bits (154), Expect = 5e-13
 Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD--SGVIR 79
           +    L V      +L D+S  ++ GELLA++G SGCGKTTLL  +AG VK    +G I 
Sbjct: 6   IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIA 65

Query: 80  LNKERLNKR--WKRKICYVLQQDIFFPELTL 108
           +    L      KR +  + Q    FP L +
Sbjct: 66  IADRDLTHAPPHKRGLALLFQNYALFPHLKV 96

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---- 87
             +  + +++  +  GE L ++GPSG GKTT +  +   ++  SG I ++ E + +    
Sbjct: 12  GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPV 71

Query: 88  RWKRKICYVLQQDIFFPELTLRQ 110
             +RKI YV+QQ   FP +T+ +
Sbjct: 72  ELRRKIGYVIQQIGLFPHMTVEE 94

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 62.6 bits (153), Expect = 1e-12
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL-----NKRWKR 91
           + DVS  ++ GE L ++G SG GK+TL   LAG +   SG I  + + L       R  R
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366

Query: 92  KICYVLQQDIFF---PELTLRQTLE 113
           +   ++ QD +    P +T+   L 
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILA 391

Length = 539

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 61.4 bits (150), Expect = 1e-12
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 12/99 (12%)

Query: 15  LSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD 74
           L  R L   F GL+        + DVS  V+PGE++ ++GP+G GKTTL N + G  K  
Sbjct: 5   LEVRGLSKRFGGLTA-------VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS 57

Query: 75  SGVIRLNKERL-----NKRWKRKICYVLQQDIFFPELTL 108
           SG +      +     ++  +  I    Q    FP LT+
Sbjct: 58  SGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTV 96

Length = 250

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 61.3 bits (149), Expect = 3e-12
 Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 8/83 (9%)

Query: 39  DVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---KRW-----K 90
           D    +    + A+ G SG GKTTL+  +AG  + D G I LN   L    K       K
Sbjct: 15  DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74

Query: 91  RKICYVLQQDIFFPELTLRQTLE 113
           R+I YV Q+   FP L++R  L 
Sbjct: 75  RRIGYVFQEARLFPHLSVRGNLR 97

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 59.9 bits (146), Expect = 4e-12
 Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 25  SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84
           + L+ T  K+ +L D+S  VK GE+   +GP+G GKTT +  + G +K DSG I  + + 
Sbjct: 4   NDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKS 63

Query: 85  LNKRWK--RKICYVLQQDIFFPELTLRQTLEVS 115
             K  +  R+I  +++   F+P LT R+ L + 
Sbjct: 64  YQKNIEALRRIGALIEAPGFYPNLTARENLRLL 96

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 59.6 bits (145), Expect = 5e-12
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 8/97 (8%)

Query: 26  GLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN---K 82
            +S     + IL D++  ++ G++ A++G SG GK+TLLN +    K DSG + LN    
Sbjct: 3   NISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQET 62

Query: 83  ERLNKRWKR-----KICYVLQQDIFFPELTLRQTLEV 114
             LN +        K+ Y+ Q        T+ + L++
Sbjct: 63  PPLNSKKASKFRREKLGYLFQNFALIENETVEENLDL 99

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 59.3 bits (144), Expect = 7e-12
 Identities = 28/53 (52%), Positives = 35/53 (66%)

Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK 87
           ILK V  VVK GE +A++GPSG GK+TLL  LAG     SG +RL  + L+K
Sbjct: 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHK 76

Length = 228

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 60.3 bits (147), Expect = 8e-12
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 7/100 (7%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           +    LS+    RP+L++VS  + PGE + ++G +G GK+TLL  LAG ++ DSG +   
Sbjct: 4   ITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRP 63

Query: 82  KERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSIADEDE 121
           K     R    + Y+ Q+    PE T+   +     +  E
Sbjct: 64  K---GLR----VGYLSQEPPLDPEKTVLDYVIEGFGELRE 96

Length = 530

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 59.2 bits (144), Expect = 8e-12
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 13/104 (12%)

Query: 22  LVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
           +    LS     ++  LKDVS  ++ GE + ++GP+G GK+TLL  L G +K  SG + +
Sbjct: 4   IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63

Query: 81  NKERLN-----KRWKRKICYVLQQDIFFPELTLRQTLEVSIADE 119
           +    +        ++K+  V Q     P+    Q    ++ DE
Sbjct: 64  DGLDTSSEKSLLELRQKVGLVFQ----NPD---DQLFGPTVEDE 100

Length = 235

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 60.2 bits (146), Expect = 9e-12
 Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 3/87 (3%)

Query: 29  VTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK--LDSGVIRLNK-ERL 85
           VT D+  +L++V+G  +PG L A+MG SG GKTTL++ LAGR       G IR++   + 
Sbjct: 888 VTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 947

Query: 86  NKRWKRKICYVLQQDIFFPELTLRQTL 112
            + + R   Y  Q DI  P++T+R++L
Sbjct: 948 QETFARISGYCEQNDIHSPQVTVRESL 974

Length = 1470

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 58.6 bits (143), Expect = 1e-11
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 9/65 (13%)

Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKIC 94
            LKD++  V  GEL+A++GP G GK++LL+ L G ++  SG + +            I 
Sbjct: 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---------SIA 69

Query: 95 YVLQQ 99
          YV Q+
Sbjct: 70 YVSQE 74

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 44  VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE--RLNKRWKRKICYVLQQDI 101
           V+ GE +A++GPSG GK+TLLN +AG +   SG + LN +        +R +  + Q++ 
Sbjct: 22  VERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENN 81

Query: 102 FFPELTLRQTL 112
            F  LT+ Q +
Sbjct: 82  LFSHLTVAQNI 92

Length = 232

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 11/108 (10%)

Query: 8   LPPEKYPLSHRPLELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNC 66
            PP    L    LE     +S   D  R +LKD+S  +  G+ +A++GP+G GK+TLL  
Sbjct: 310 FPPPGKRLGKLVLEFE--NVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKL 367

Query: 67  LAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ-QDIFFPELTLRQTLE 113
           LAG +   SG +++ +         KI Y  Q +D   P+ T+ + L 
Sbjct: 368 LAGELGPLSGTVKVGE-------TVKIGYFDQHRDELDPDKTVLEELS 408

Length = 530

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 58.3 bits (142), Expect = 2e-11
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 24 FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVI 78
             L+V    +  LKD+S  +  GE+ A++GPSGCGK+TLL  L     L     D G +
Sbjct: 3  LRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEV 62

Query: 79 RLN 81
           L+
Sbjct: 63 LLD 65

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 16/82 (19%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIR---LN 81
           D  P+L+D+S  +  GE +A++GPSG GK+TL+N +       +GR+ +D   +R   L 
Sbjct: 13  DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLA 72

Query: 82  KERLNKRWKRKICYVLQQDIFF 103
             R      R+I  V Q    F
Sbjct: 73  SLR------RQIGLVSQDVFLF 88

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 58.3 bits (142), Expect = 2e-11
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           L   GLSV+ D    L D+S  V PGEL  ++GP+G GKTT+++ + G+ + D G +   
Sbjct: 3   LYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFG 62

Query: 82  KERLNKRWKRKI-----CYVLQQDIFFPELTLRQTLEVS 115
              L    + +I         Q+   F  LT+ + LE++
Sbjct: 63  GTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELA 101

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 9/110 (8%)

Query: 9   PPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA 68
           P +++P+      +    +SV  + + IL D+S  V PGE  A++GP+G GKTTLL+ L 
Sbjct: 19  PKKRHPIEINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLT 78

Query: 69  GRVKLDSGVIRLNKERLNKR---W--KRKICYV---LQQDIFFPELTLRQ 110
           G     SG + L   R  K    +  +++I  V   L +  F    T+R 
Sbjct: 79  GEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHER-FRVRETVRD 127

Length = 257

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 57.5 bits (140), Expect = 2e-11
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG--RVKLDSGVIR 79
          L    L V++  + ILK V+  +K GE+ A+MGP+G GK+TL   + G  + ++  G I 
Sbjct: 1  LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEIL 60

Query: 80 LNKE 83
             E
Sbjct: 61 FKGE 64

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 58.7 bits (142), Expect = 2e-11
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 3/106 (2%)

Query: 9   PPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA 68
           P  K   +  PL L    L+ + D +  + DVS  +  GE+ A++G SGCGK+TLL  LA
Sbjct: 8   PQAKTRKALTPL-LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLA 66

Query: 69  GRVKLDSGVIRLNKERLNK--RWKRKICYVLQQDIFFPELTLRQTL 112
           G  +  +G I L+   L+    ++R I  + Q    FP +T+ Q +
Sbjct: 67  GFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNI 112

Length = 377

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--KRWKRKIC 94
           LK+VS  V+ G+   ++GP+G GK+ LL  +AG +K DSG I LN + +      KR I 
Sbjct: 15  LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74

Query: 95  YVLQQDIFFPELTLRQTLE 113
           YV Q    FP +T+ + + 
Sbjct: 75  YVPQNYALFPHMTVYKNIA 93

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 57.6 bits (139), Expect = 3e-11
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 34  RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRW 89
             IL ++S  V+ GE +A+ GPSGCGK+TLL  +A  +   SG +    E ++    + +
Sbjct: 16  AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAY 75

Query: 90  KRKICYVLQQDIFFPE 105
           ++++ Y  Q    F +
Sbjct: 76  RQQVSYCAQTPALFGD 91

Length = 223

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 58.4 bits (142), Expect = 4e-11
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 17/98 (17%)

Query: 17 HRPLELVFSGLSVTL----DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL----- 67
            PL L    L+V       + P ++DVS  V+PGE+L ++G SG GK+TL   L     
Sbjct: 2  MSPL-LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP 60

Query: 68 ------AGRVKLDSG-VIRLNKERLNKRWKRKICYVLQ 98
                +G V LD   ++ L++  + K   ++I  + Q
Sbjct: 61 EGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQ 98

Length = 539

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 56.6 bits (137), Expect = 4e-11
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 35  PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWK--RK 92
            +LK++S  +K GE +A++G SG GK+TLL  L G +K   G I L+   ++   K    
Sbjct: 16  QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSS 75

Query: 93  ICYVLQQDIFFPELTLRQTL 112
           +  VL Q  +  + TLR  L
Sbjct: 76  LISVLNQRPYLFDTTLRNNL 95

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 58.0 bits (141), Expect = 4e-11
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 12/81 (14%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI--------RLNKE 83
           D   IL DVS  ++PGE +A++GPSG GK+TLL  L G    +SG +         L+ +
Sbjct: 464 DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQ 523

Query: 84  RLNKRWKRKICYVLQQDIFFP 104
            +    +R++  VLQ      
Sbjct: 524 AV----RRQLGVVLQNGRLMS 540

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 57.5 bits (140), Expect = 4e-11
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 15/92 (16%)

Query: 23  VFSGLSVTLDKRP---ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVK 72
            F  +S     RP   ILK +S  + PG+ +A++G SGCGK+T+++ L       +G + 
Sbjct: 2   EFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL 61

Query: 73  LDSGVIRLNKERLNKRWKR-KICYVLQQDIFF 103
           LD   IR     LN RW R +I  V Q+ + F
Sbjct: 62  LDGVDIR----DLNLRWLRSQIGLVSQEPVLF 89

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 57.3 bits (139), Expect = 4e-11
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 8/97 (8%)

Query: 28  SVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK 87
             T  ++  L  +S  +  G+ + V+G +G GK+TLLN +AG +K  SG I ++   + K
Sbjct: 13  KGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTK 72

Query: 88  R--WKR-KICYVLQQDIF---FPELTLRQTLEVSIAD 118
           +   KR  +   + QD      PELT+ + L  ++A+
Sbjct: 73  KSVAKRANLLARVFQDPLAGTAPELTIEENL--ALAE 107

Length = 263

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 57.8 bits (140), Expect = 5e-11
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 6   PSLPPEKYPLSHRPLELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLL 64
           P +     PL      + F  +S +   K+P+LKD+S  ++PGE +A++GPSG GK+TL+
Sbjct: 313 PEVEDPPDPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLI 372

Query: 65  NCLAGRVKLDSGVIRLNKERLN----KRWKRKICYVLQQDIFF 103
             L       SG I ++   +        +++I  V Q  + F
Sbjct: 373 KLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLF 415

Length = 567

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 56.9 bits (138), Expect = 5e-11
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 11/93 (11%)

Query: 33  KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL---------NKE 83
           ++ +L D++  + PGE++ + GPSG GKTTLL  + G   +  G +++          KE
Sbjct: 17  RKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKE 76

Query: 84  RLNKRWKRKICYVLQQDIFFPELTLRQTLEVSI 116
            +  R  R I Y+ Q       LT RQ +++++
Sbjct: 77  LVQLR--RNIGYIFQAHNLLGFLTARQNVQMAL 107

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 56.8 bits (138), Expect = 5e-11
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 25  SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84
             L+     R +   +S  +  GE L + GP+G GKTTLL  +AG +   +G I+L+   
Sbjct: 6   EDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD 65

Query: 85  LNKRWKRKIC-YVLQQDIFFPELTLRQTLE 113
           ++     + C Y+  ++   P LT+ + LE
Sbjct: 66  IDDPDVAEACHYLGHRNAMKPALTVAENLE 95

Length = 207

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 57.4 bits (139), Expect = 6e-11
 Identities = 25/91 (27%), Positives = 49/91 (53%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           L   G++ +   +  + ++S  V PGE+  ++GP+G GKTT    + G ++   G I  N
Sbjct: 3   LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWN 62

Query: 82  KERLNKRWKRKICYVLQQDIFFPELTLRQTL 112
              L++  K +I Y+ ++   +P++T+   L
Sbjct: 63  GGPLSQEIKNRIGYLPEERGLYPKMTVEDQL 93

Length = 300

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 56.5 bits (137), Expect = 6e-11
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 26  GLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85
            LS    +R +  D+S  +  GE L + GP+G GKTTLL  LAG ++ D+G +    E +
Sbjct: 7   NLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPI 66

Query: 86  N---KRWKRKICYVLQQDIFFPELTLRQTL 112
               + + + + Y+  Q     ELT  + L
Sbjct: 67  QNVRESYHQALLYLGHQPGIKTELTALENL 96

Length = 209

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 57.7 bits (140), Expect = 6e-11
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 7/74 (9%)

Query: 33  KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRK 92
           K+PILK +S  ++ GE L ++GPSG GK+TL   L G     SG +RL+   L ++W R+
Sbjct: 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADL-RQWDRE 406

Query: 93  -----ICYVLQQDI 101
                I Y L QD+
Sbjct: 407 QLGRHIGY-LPQDV 419

Length = 580

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 57.2 bits (139), Expect = 6e-11
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
          PL L   GL+     R   +DVS  + PGE+L ++G SG GKTTLLN L+ R+  D+G +
Sbjct: 5  PL-LSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV 63

Query: 79 R 79
           
Sbjct: 64 H 64

Length = 258

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 51  AVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--------KRWKRKICYVLQQDIF 102
           A+ GPSG GKT+L+N +AG  + D G I LN   L            KR+I YV Q    
Sbjct: 28  ALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87

Query: 103 FPELTLRQTL 112
           FP  T+R  L
Sbjct: 88  FPHYTVRGNL 97

Length = 352

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 55.1 bits (134), Expect = 1e-10
 Identities = 20/52 (38%), Positives = 33/52 (63%)

Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN 86
            L  VS  V+ GE+ A++G +G GK+TL+  L+G  K DSG I ++ + ++
Sbjct: 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS 65

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 7/74 (9%)

Query: 33  KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRK 92
           K+P L+ +S  ++ GE LA++GPSG GK+TL   + G     SG +RL+   L  +W R+
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLK-QWDRE 388

Query: 93  -----ICYVLQQDI 101
                I Y L QD+
Sbjct: 389 TFGKHIGY-LPQDV 401

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 2/89 (2%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           +V   ++       ++ +++  +K G ++ ++GPSGCGKTT+L  +AG  K   G I ++
Sbjct: 7   VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFID 66

Query: 82  KERLNKR--WKRKICYVLQQDIFFPELTL 108
            E +  R   +R IC V Q    FP ++L
Sbjct: 67  GEDVTHRSIQQRDICMVFQSYALFPHMSL 95

Length = 351

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR--VKLDSGVIRLNKE 83
           K+ ILK V+  VK GE+ A+MGP+G GK+TL   + G    ++  G I  + E
Sbjct: 15 GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGE 68

Length = 251

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 26  GLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG------VIR 79
           G+SV+      L D+S  V PGEL  ++GP+G GKTTL++ + G+ +   G         
Sbjct: 10  GVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTD 69

Query: 80  LNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVS 115
           L K   ++  +  I    Q+   F  LT+R+ LE++
Sbjct: 70  LTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELA 105

Length = 249

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 55.2 bits (133), Expect = 2e-10
 Identities = 25/68 (36%), Positives = 38/68 (55%)

Query: 14 PLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL 73
          PL   P  L    L+ + ++ P+   +   V  GE L V G +G GKTTLL  LAG + +
Sbjct: 4  PLHTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV 63

Query: 74 DSGVIRLN 81
          +SG I+++
Sbjct: 64 ESGQIQID 71

Length = 214

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 29/62 (46%), Positives = 41/62 (66%)

Query: 25 SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84
            LS +L  R +L  VS  ++PGE+LA++GP+G GK+TLL  L+G +  DSG + LN   
Sbjct: 5  ENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVP 64

Query: 85 LN 86
          LN
Sbjct: 65 LN 66

Length = 259

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 55.6 bits (134), Expect = 3e-10
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 8/85 (9%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVI-RLNKERLNKR 88
           + D    +  GE+  +MG SG GK+T +  L       AG++ +D   I + +   L + 
Sbjct: 9   VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68

Query: 89  WKRKICYVLQQDIFFPELTLRQTLE 113
            ++KI  V QQ   FP +T+ Q   
Sbjct: 69  RRKKIGMVFQQFALFPHMTILQNTS 93

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 54.8 bits (132), Expect = 4e-10
 Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 15 LSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD 74
          +  +PL L  SGLS         +DVS  + PGE+L ++G SG GKTTLL C++GR+  D
Sbjct: 1  MMDKPL-LSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD 59

Query: 75 SGVI 78
          +G +
Sbjct: 60 AGTV 63

Length = 258

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 54.8 bits (132), Expect = 5e-10
 Identities = 25/58 (43%), Positives = 35/58 (60%)

Query: 26 GLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE 83
          G+S T   R I  ++S  V  G++ A+MGPSG GKTTLL  + G++  D G I  + E
Sbjct: 12 GVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGE 69

Length = 269

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 54.8 bits (133), Expect = 6e-10
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 22/120 (18%)

Query: 2   VSNIPSLPPE-KYPLSHRP----LELVFSGLSVTLDKR--PILKDVSGVVKPGELLAVMG 54
           ++ I    PE  +P +       + L  + +S T   +  P+LK +S  +K GE +A++G
Sbjct: 314 INEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLG 373

Query: 55  PSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEV 114
            +GCGK+TLL  L        G I LN + +                 + E  LRQ + V
Sbjct: 374 RTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD---------------YSEAALRQAISV 418

Length = 574

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 54.2 bits (131), Expect = 6e-10
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           L  +GLS     R  L DVS  V+PG  +A++GP+G GK+TL + L        G I + 
Sbjct: 2   LEVAGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVA 61

Query: 82  KERLN---KRWKRKICYVLQQDIFFPELTLRQTL 112
              L    +    ++  V QQ     +L++RQ L
Sbjct: 62  GHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNL 95

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 54.5 bits (132), Expect = 8e-10
 Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 15/125 (12%)

Query: 9   PPEKYPLSHRPL--ELVFSGLSVTL--DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLL 64
           P     L    L  E+ F  +S      + P L +VS  ++PGE +A++G  G GK+TLL
Sbjct: 449 PEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLL 508

Query: 65  NCLAGRVKLDSGVIRLNKERLNKR------WKRKICYVLQQDIFFPELTLRQ--TLEVSI 116
             L G  +   G + L  + ++ R       +R I YV  QD      TLR    L    
Sbjct: 509 KLLLGLYQPTEGSVLL--DGVDIRQIDPADLRRNIGYV-PQDPRLFYGTLRDNIALGAPY 565

Query: 117 ADEDE 121
           AD++E
Sbjct: 566 ADDEE 570

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 53.7 bits (130), Expect = 8e-10
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 4/95 (4%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           L    L+    K+  L  VS  + PG +  ++GP+G GKTTL+  LA      SG IR++
Sbjct: 1   LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59

Query: 82  KERLNKRWK---RKICYVLQQDIFFPELTLRQTLE 113
            + + K+ +   R+I Y+ Q+   +P  T+R+ L+
Sbjct: 60  GQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLD 94

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 9/78 (11%)

Query: 36  ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN------KRW 89
           +LK ++   + GE+LA++G +G GK+TLL  L G ++  SG + ++ E L+         
Sbjct: 7   VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLER 66

Query: 90  KRKICYVLQ---QDIFFP 104
           ++++  V Q     +F  
Sbjct: 67  RQRVGLVFQDPDDQLFAA 84

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 54.1 bits (130), Expect = 1e-09
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 4/93 (4%)

Query: 25  SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE- 83
           S LSV      +L  V   V+ G L+ ++GP+G GKTTLL  + G +   +G + +  + 
Sbjct: 7   SDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDD 66

Query: 84  ---RLNKRWKRKICYVLQQDIFFPELTLRQTLE 113
                 +   R++  V Q      E  +RQ +E
Sbjct: 67  VEALSARAASRRVASVPQDTSLSFEFDVRQVVE 99

Length = 402

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 52.9 bits (127), Expect = 1e-09
 Identities = 28/75 (37%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query: 44  VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKICYVLQQDI 101
           V  GE++A+MGPSG GK+TLLN +AG ++  SG I++N +       ++R +  + Q++ 
Sbjct: 21  VADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80

Query: 102 FFPELTLRQTLEVSI 116
            F  LT+RQ + + +
Sbjct: 81  LFAHLTVRQNIGLGL 95

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 9/90 (10%)

Query: 28  SVTL-------DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
           SVTL           I KD++  +  GE +  +GPSGCGK+TLL  +AG   + SG + +
Sbjct: 3   SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI 62

Query: 81  NKERLNKR--WKRKICYVLQQDIFFPELTL 108
            ++R+N     +R +  V Q    +P L++
Sbjct: 63  GEKRMNDVPPAERGVGMVFQSYALYPHLSV 92

Length = 369

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.3 bits (129), Expect = 1e-09
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 24 FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL 67
             L++    +  LKD++  +   ++ A++GPSGCGK+TLL CL
Sbjct: 10 VRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCL 53

Length = 253

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 4/86 (4%)

Query: 25  SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE- 83
           + +  +  +  +L D+S  +  G+++A++GPSG GKTTLL  +AG     SG IR +   
Sbjct: 6   ANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTD 65

Query: 84  --RLNKRWKRKICYVLQQDIFFPELT 107
             RL+ R  RK+ +V Q    F  +T
Sbjct: 66  VSRLHAR-DRKVGFVFQHYALFRHMT 90

Length = 353

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 53.3 bits (128), Expect = 2e-09
 Identities = 27/58 (46%), Positives = 35/58 (60%)

Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
          L  SGLS +       +DVS  + PGE+L ++G SG GK+TLL CLAGR+  D G   
Sbjct: 4  LQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT 61

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKI 93
          R  L+DVS  +  GE + + GPSG GK+TLL  + G  +   G I +N   L++   R+I
Sbjct: 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREI 74

Query: 94 CYVLQQ 99
           ++ +Q
Sbjct: 75 PFLRRQ 80

Length = 223

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 44  VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKICYVLQQDI 101
           V  GE++A++GPSG GK+TLLN +AG     SG I +N          +R +  + Q++ 
Sbjct: 22  VPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENN 81

Query: 102 FFPELTLRQTL 112
            F  LT+ Q +
Sbjct: 82  LFAHLTVAQNI 92

Length = 231

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 33  KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE----RLNKR 88
           + P+LK+VS  V  GE +A+ GPSG GK+TLL  L      DSG I +  E     L + 
Sbjct: 20  RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79

Query: 89  WKRKICYVLQQDI 101
             R++  V ++ I
Sbjct: 80  SPREVLEVRRKTI 92

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 52.5 bits (127), Expect = 2e-09
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 13/66 (19%)

Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
          ++FSGLS TL               GEL+ + GP+G GKT+LL  LAG  + D+G +   
Sbjct: 15 ILFSGLSFTL-------------NAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ 61

Query: 82 KERLNK 87
           E + +
Sbjct: 62 GEPIRR 67

Length = 204

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 52.6 bits (127), Expect = 2e-09
 Identities = 36/99 (36%), Positives = 47/99 (47%), Gaps = 11/99 (11%)

Query: 34  RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE---RLNKR-- 88
              L DVS  ++ GE L + GPSG GKTTLL  L G +    G +R+  E   RL  R  
Sbjct: 15  VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQL 74

Query: 89  --WKRKICYVLQQDIFFPELTLRQ----TLEVSIADEDE 121
              +R+I  V Q     P+ T+ +     LEV    E E
Sbjct: 75  PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKERE 113

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 8/103 (7%)

Query: 21  ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
           E VF   +VT   R  ++D+S  V  GE+L   G  G G+T L+NCL G  K   G IRL
Sbjct: 263 ETVFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL 322

Query: 81  NKERLNKR-----WKRKICYVLQ---QDIFFPELTLRQTLEVS 115
           N + ++ R      K+ + Y+ +    + FFP  ++ Q + +S
Sbjct: 323 NGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAIS 365

Length = 510

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 22  LVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
           L    LS       P+L  VS  + PGE +A++GPSG GK+TLL  LAG +    G + L
Sbjct: 335 LELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTL 394

Query: 81  NKERLNK----RWKRKICYVLQQDIFFPELTLRQTLEVSIADEDE 121
           +   ++       +R++    Q    F + T+R+ L ++  D  +
Sbjct: 395 DGVPVSSLDQDEVRRRVSVCAQDAHLF-DTTVRENLRLARPDATD 438

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 53.0 bits (128), Expect = 3e-09
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 12/79 (15%)

Query: 33  KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIR-LNKER 84
            R  ++DVS   KPG+ +A++GP+G GK+TL+N L       +GR+ +D   IR + +  
Sbjct: 347 SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRAS 406

Query: 85  LNKRWKRKICYVLQQDIFF 103
           L    +R I  V Q    F
Sbjct: 407 L----RRNIAVVFQDAGLF 421

Length = 588

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 52.6 bits (127), Expect = 3e-09
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKI 93
           +  VS  +K GE L ++G SGCGK+TL   + G  +  SG I    + + K  K + 
Sbjct: 28 AVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEER 85

Length = 268

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 52.9 bits (128), Expect = 3e-09
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR 88
          L  VS  V+PGE+ A++G +G GK+TL+  L+G    DSG I ++ + +   
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFS 75

Length = 500

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 25/80 (31%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYV 96
           LK V+  ++ GE ++++G SGCGK+TLLN ++G  +  SG + L  +++ +    ++  V
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMV-V 59

Query: 97  LQQDIFFPELTLRQTLEVSI 116
            Q     P LT+R+ + +++
Sbjct: 60  FQNYSLLPWLTVRENIALAV 79

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 52.2 bits (126), Expect = 3e-09
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 12/80 (15%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIR-LNKE 83
             RP+LKDVS  +  G+ +A++GPSG GK+T+L  L       +G + +D   IR +  +
Sbjct: 12  PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLD 71

Query: 84  RLNKRWKRKICYVLQQDIFF 103
            L    +R I  V Q  + F
Sbjct: 72  SL----RRAIGVVPQDTVLF 87

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 52.1 bits (126), Expect = 3e-09
 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 14/104 (13%)

Query: 12  KYPLSHRPLELVFSGLSVTL----DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL 67
            YP        +     +       +   LKDVS  V  GE + ++G +G GK+TLL  L
Sbjct: 9   SYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLL 68

Query: 68  AGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFF-PELTLRQ 110
           AG    DSG + +           ++  +L     F PELT R+
Sbjct: 69  AGIYPPDSGTVTVR---------GRVSSLLGLGGGFNPELTGRE 103

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 52.3 bits (126), Expect = 4e-09
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG--------VIRLNKERLNKR 88
           + DVS  V+ GE+  +MG SG GK+TLL C+   ++  SG        +  ++++ L + 
Sbjct: 40  VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99

Query: 89  WKRKICYVLQQDIFFPELT 107
            ++KI  V Q     P  T
Sbjct: 100 RRKKISMVFQSFALLPHRT 118

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 51.6 bits (124), Expect = 5e-09
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG---VIRLNKERLNKRWKRKI 93
           ++ VS  V+ GE+  ++GP+G GKTT +  L   +K  SG   V   +  R  +  +R+I
Sbjct: 16  VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRI 75

Query: 94  CYVLQQDIFFPELTLRQTLEV 114
             V Q      ELT  + L +
Sbjct: 76  GIVFQDLSVDDELTGWENLYI 96

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 51.5 bits (124), Expect = 7e-09
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 10/79 (12%)

Query: 35  PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKIC 94
             LKD+S  +  GE + ++G +G GK+TLL  +AG  K  SG +++           K+ 
Sbjct: 41  WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG---------KVA 91

Query: 95  YVLQQDI-FFPELTLRQTL 112
            +++    F PELT R+ +
Sbjct: 92  PLIELGAGFDPELTGRENI 110

Length = 249

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 51.6 bits (124), Expect = 7e-09
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 4/77 (5%)

Query: 27 LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN 86
          L+V    + IL D+S  +  G++ A++GP+GCGK+TLL C A  +   SG + L  + ++
Sbjct: 8  LTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPIS 67

Query: 87 ----KRWKRKICYVLQQ 99
              ++  R++  + Q 
Sbjct: 68 MLSSRQLARRLALLPQH 84

Length = 255

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 51.4 bits (123), Expect = 9e-09
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
           L  S +S +   R I+  V     PG L  ++GP+G GK+TLL  LAG ++ D+G + L
Sbjct: 1  GLRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL 60

Query: 81 NKERL 85
              L
Sbjct: 61 AGVDL 65

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 50.2 bits (121), Expect = 9e-09
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 22  LVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
           +    LS+   D R +LKD+S  +KPG+ L + GPSG GK++L   LAG     SG    
Sbjct: 1   IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSG---- 56

Query: 81  NKERLNKRWKRKICYVLQQDIFFPELTLRQTL 112
              R+       + ++ Q+  + P  TLR+ L
Sbjct: 57  ---RIGMPEGEDLLFLPQRP-YLPLGTLREQL 84

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 22/49 (44%), Positives = 34/49 (69%)

Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70
          L    L V+++ + IL+ ++  V+PGE+ A+MGP+G GK+TL   LAGR
Sbjct: 2  LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50

Length = 248

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           + P L +VS  ++ GE +A++G  G GK+TLL  LAG  K  SG + L+
Sbjct: 15 QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLD 64

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR---WKRKI 93
           +  VS  VKPGE+  ++GP+G GKTT L  LAG ++ D+G   ++   + K     +R++
Sbjct: 21  VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80

Query: 94  CYVLQQDIFFPELTLRQTLE 113
            +V      +  LT R+ LE
Sbjct: 81  GFVSDSTGLYDRLTARENLE 100

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 35  PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKIC 94
             L  ++  +  GE + ++GPSG GK+TLL  +       SG IR+N + ++    R I 
Sbjct: 15  AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP 74

Query: 95  Y-------VLQQDIFFPELT 107
           Y       V Q     P+  
Sbjct: 75  YLRRKIGVVFQDFRLLPDRN 94

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 2/60 (3%)

Query: 22  LVF--SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
           +VF    ++  +D + ++KD S  V+ G+ +A++GP+GCGKTTLL  + G+++ DSG I 
Sbjct: 318 IVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIH 377

Length = 635

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 52  VMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKICYVLQQDIFFPELTLR 109
           ++GPSGCGKTTLL  LAG  + DSG I L+ E +       R I  V Q    FP +T+ 
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60

Query: 110 Q 110
           +
Sbjct: 61  E 61

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 24  FSGLSVTL--DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           F  ++       RP L  +S V++PGE +A++G SG GK+TL+N +    + DSG I L+
Sbjct: 333 FRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLD 392

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 12/83 (14%)

Query: 36  ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICY 95
            L D+S  V+ GE+  ++GP+G GKTT +  + G +  DSG +  + + L+   + +I Y
Sbjct: 15  ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGY 74

Query: 96  ------------VLQQDIFFPEL 106
                       V+ Q ++  +L
Sbjct: 75  LPEERGLYPKMKVIDQLVYLAQL 97

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 12/97 (12%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG--------VIRLNKERLNKR 88
           + D S  V+ GE+  +MG SG GK+TL+  L   ++   G        + +L+   L + 
Sbjct: 44  VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103

Query: 89  WKRKICYVLQQDIFFPELTLRQT----LEVSIADEDE 121
            ++KI  V Q     P  T+ +     LEV    + E
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAE 140

Length = 386

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 7/73 (9%)

Query: 18 RPLELVFSGL--SVTLDKR-----PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70
           P  L  S +  + TL ++     P+L++VS  V  GE + + GPSG GK+TLL  L   
Sbjct: 1  MPTPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYAN 60

Query: 71 VKLDSGVIRLNKE 83
             D G I +  E
Sbjct: 61 YLPDEGQILVRHE 73

Length = 235

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 49.8 bits (120), Expect = 3e-08
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 33  KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WK 90
           K  ++K +   V  GE + ++GPSGCGK+TLL  +AG  ++ SG I +    +N+     
Sbjct: 16  KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPAD 75

Query: 91  RKICYVLQQDIFFPELTLRQTLE 113
           R I  V Q    +P +++R+ + 
Sbjct: 76  RDIAMVFQNYALYPHMSVRENMA 98

Length = 356

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 50.2 bits (120), Expect = 3e-08
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 5/104 (4%)

Query: 14  PLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL 73
           P+S  P++  F  +      + ++  +S  V+ GE   ++GP+G GKTT L  L G    
Sbjct: 2   PMSVAPID--FRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP 59

Query: 74  DSGVIRLNKERLNKRWKR---KICYVLQQDIFFPELTLRQTLEV 114
           D+G I L  E +  R +    ++  V Q D   P+ T+R+ L V
Sbjct: 60  DAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLV 103

Length = 306

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 49.9 bits (119), Expect = 3e-08
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 5/96 (5%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           L    L+     R +++DVS  V  GE++ ++GP+G GKTT    + G V  D+G I ++
Sbjct: 4   LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIID 63

Query: 82  KER-----LNKRWKRKICYVLQQDIFFPELTLRQTL 112
            E      L+ R +R I Y+ Q+   F  L++   L
Sbjct: 64  DEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNL 99

Length = 241

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 11/76 (14%)

Query: 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL---------NKE 83
          K   LKDVS  V  GE+  ++G SG GK+TL+ C+ G  +  SG + +          KE
Sbjct: 17 KVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKE 76

Query: 84 RLNKRWKRKICYVLQQ 99
              R  R+I  + Q 
Sbjct: 77 LRKAR--RRIGMIFQH 90

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 12/84 (14%)

Query: 36  ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL------------NKE 83
           +L  +   VKPGE++A++GPSG GKTTLL C+    + ++G IR+             ++
Sbjct: 18  VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77

Query: 84  RLNKRWKRKICYVLQQDIFFPELT 107
            L ++ ++ + +V Q    FP  T
Sbjct: 78  GLIRQLRQHVGFVFQNFNLFPHRT 101

Length = 250

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 49.0 bits (117), Expect = 3e-08
 Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 16/98 (16%)

Query: 18  RPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV 77
           R    +FSGLS TL               GE L V GP+G GKTTLL  LAG     +G 
Sbjct: 10  RDGRALFSGLSFTLAA-------------GEALQVTGPNGSGKTTLLRILAGLSPPLAGR 56

Query: 78  IRLNKERLNKR---WKRKICYVLQQDIFFPELTLRQTL 112
           + LN   L+ +     R + Y+         L++ + L
Sbjct: 57  VLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENL 94

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 5/81 (6%)

Query: 35  PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL-----NKRW 89
            +LK +   +  GE+ A++G +G GK+TL+  +AG V  DSG + +           K  
Sbjct: 25  EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH 84

Query: 90  KRKICYVLQQDIFFPELTLRQ 110
           +  I  V Q+ + FP L++++
Sbjct: 85  QLGIYLVPQEPLLFPNLSVKE 105

Length = 510

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 31  LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---- 86
                IL ++S  ++ GE   + GPSGCGK+TLL  +A  +   SG +    E ++    
Sbjct: 17  AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP 76

Query: 87  KRWKRKICYVLQQDIFFPE 105
           + +++++ Y  Q    F +
Sbjct: 77  EIYRQQVSYCAQTPTLFGD 95

Length = 225

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN--KERLNKRW---KR 91
             DVS  VK GE+ A++G +G GK+TL+  L G  + DSG IR++  + R+       + 
Sbjct: 20  NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79

Query: 92  KICYVLQQDIFFPELT 107
            I  V Q  +  P LT
Sbjct: 80  GIGMVHQHFMLVPTLT 95

Length = 501

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 49.2 bits (118), Expect = 5e-08
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--W 89
               LKDVS  V  GE +A++G +G GK+TL   L G +  ++G I +    L++   W
Sbjct: 18 AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVW 77

Query: 90 --KRKICYVLQ 98
            +R++  V Q
Sbjct: 78 DVRRQVGMVFQ 88

Length = 279

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 49.2 bits (118), Expect = 5e-08
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 9/73 (12%)

Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVI-RLNKERLN 86
            L DVS  +  GE+  ++G SG GK+TLL  +       +G V +D   +  L++  L 
Sbjct: 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79

Query: 87 KRWKRKICYVLQQ 99
          +  ++KI  + Q 
Sbjct: 80 QL-RQKIGMIFQH 91

Length = 339

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 48.4 bits (115), Expect = 6e-08
 Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 34  RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWK 90
           +P+L+ +S  +  G LL + G +G GKTTLL  +AG +  + G I   ++ + K    ++
Sbjct: 14  QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQ 73

Query: 91  RKICYVLQQDIFFPELTLRQ 110
           +++C+V  +    P LTLR+
Sbjct: 74  KQLCFVGHRSGINPYLTLRE 93

Length = 200

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 48.7 bits (117), Expect = 7e-08
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 15/78 (19%)

Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL------------AGRVKLD-SGVIRLN 81
            +  VS  +K GE+L ++G SG GK+ L   +             G +  D   ++ L+
Sbjct: 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78

Query: 82 KERLNK-RWKRKICYVLQ 98
          ++ L K R K +I  + Q
Sbjct: 79 EKELRKIRGK-EIAMIFQ 95

Length = 316

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 48.6 bits (116), Expect = 7e-08
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 7/73 (9%)

Query: 27 LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN 86
          +SV+  +R +L DVS  +KPG++L ++GP+G GK+TL+  + G V  D GVI+ N     
Sbjct: 10 VSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG---- 65

Query: 87 KRWKRKICYVLQQ 99
             K +I YV Q+
Sbjct: 66 ---KLRIGYVPQK 75

Length = 251

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 48.4 bits (116), Expect = 7e-08
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 40 VSGV---VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85
          V+ V   V+  E+++++GP+G GKTT+ NCL G  K   G I L  + +
Sbjct: 21 VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHI 69

Length = 255

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 48.2 bits (115), Expect = 7e-08
 Identities = 25/93 (26%), Positives = 46/93 (49%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           L    LS    K+  + ++S  V    +  ++GP+G GK+TLL  + G ++  SG I  +
Sbjct: 1   LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFD 60

Query: 82  KERLNKRWKRKICYVLQQDIFFPELTLRQTLEV 114
                ++   KI  +++    +  LT R+ L+V
Sbjct: 61  GHPWTRKDLHKIGSLIESPPLYENLTARENLKV 93

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 48.3 bits (115), Expect = 8e-08
 Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 4/76 (5%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL---NKR 88
           D   IL ++S  +KPGE++ ++G SG GK+TL   +      ++G + ++   L   +  
Sbjct: 13  DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPA 72

Query: 89  W-KRKICYVLQQDIFF 103
           W +R++  VLQ+++ F
Sbjct: 73  WLRRQVGVVLQENVLF 88

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 48.5 bits (116), Expect = 8e-08
 Identities = 17/43 (39%), Positives = 29/43 (67%)

Query: 27 LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69
          L  ++++  ILK ++  +  GE+ A+MGP+G GK+TL   +AG
Sbjct: 13 LHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55

Length = 252

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 48.7 bits (117), Expect = 8e-08
 Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 51  AVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--------WKRKICYVLQQDIF 102
           A+ G SG GKT+L+N ++G  +   G I LN   L            KR+I YV Q    
Sbjct: 28  AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARL 87

Query: 103 FPELTLRQTLEVSIADED 120
           FP   +R  L   +A   
Sbjct: 88  FPHYKVRGNLRYGMAKSM 105

Length = 352

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 48.4 bits (116), Expect = 9e-08
 Identities = 19/57 (33%), Positives = 34/57 (59%)

Query: 24  FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
              LS     + ++ D+S  + PG ++ V+GP+G GK+TL   + G+ + DSG I++
Sbjct: 325 AENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI 381

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 47.4 bits (114), Expect = 9e-08
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 27 LSVT-LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85
          L V  L  +  ++DVS  V+ GE++ + G  G G+T L   L G     SG I L+ + +
Sbjct: 5  LEVRGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPV 64

Query: 86 N-----KRWKRKICYV 96
                   +  I YV
Sbjct: 65 TRRSPRDAIRAGIAYV 80

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 7/53 (13%)

Query: 34  RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIR 79
           +P L  ++  V+PGE +A++GPSG GK+TL   L       +GR+ LD   +R
Sbjct: 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLR 405

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 6/75 (8%)

Query: 34  RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR-----LNKERLNKR 88
            P L++V+  +KPG++L + GP+G GK+TLL+ +     +  G IR     L K +L+  
Sbjct: 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDS- 386

Query: 89  WKRKICYVLQQDIFF 103
           W+ ++  V Q    F
Sbjct: 387 WRSRLAVVSQTPFLF 401

Length = 569

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 35  PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKIC 94
             LK +S  ++ GE++  +GP+G GKTT L  L+G ++  SG +R+        WKR+  
Sbjct: 35  EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLV---PWKRRKK 91

Query: 95  YVLQQDIFF 103
           ++ +  + F
Sbjct: 92  FLRRIGVVF 100

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 20/43 (46%), Positives = 29/43 (67%)

Query: 27 LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69
          L V    R IL+D+S  ++PG + A++G +G GK+TLL  LAG
Sbjct: 7  LHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG 49

Length = 272

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 4/88 (4%)

Query: 27  LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL- 85
           +S +   + +L DVS  +  G + +++GP+G GK+TLL+ ++  +K DSG I ++   L 
Sbjct: 7   VSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELT 66

Query: 86  ---NKRWKRKICYVLQQDIFFPELTLRQ 110
              +K   +K+  + Q++     LT+R 
Sbjct: 67  STPSKELAKKLSILKQENHINSRLTVRD 94

Length = 252

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 8/87 (9%)

Query: 36  ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR--------LNKERLNK 87
           +LK +S  +  GE++A++G SG GK+TL+N L    K  SG  R        L+ + L +
Sbjct: 23  VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82

Query: 88  RWKRKICYVLQQDIFFPELTLRQTLEV 114
             +    ++ Q+      LT  Q +EV
Sbjct: 83  LRREHFGFIFQRYHLLSHLTAAQNVEV 109

Length = 648

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 2   VSNIPSLPPEKYPLSHRPLELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGK 60
           VS+ P  PP       R   + F  +S   D  RPIL  +S  +  G+ +A++G SG GK
Sbjct: 246 VSDAPDAPPLW---PVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGK 302

Query: 61  TTLLNCLAGRVKLDSGVIRLNKERL 85
           +T+L  L     ++SG I ++ + +
Sbjct: 303 STILRLLFRFYDVNSGSITIDGQDI 327

Length = 497

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 6/93 (6%)

Query: 34  RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKI 93
            P++++ S  ++PG+ +A++G SG GK+T+   +AG  +  SG I  +     +  +  +
Sbjct: 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551

Query: 94  CYVL---QQDIFFPELTLRQTLEV---SIADED 120
              +    QDIF  E T+R  L +   +I D D
Sbjct: 552 ANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDAD 584

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 24  FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV-----I 78
           F  +S       +L ++   +  GE++ ++GPSG GK+TLL C+    ++ SG      +
Sbjct: 4   FKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGL 63

Query: 79  RLNKERLNKRWKRKIC-YVLQQDIFFPELT 107
           ++N  ++++R  R+    V QQ   FP LT
Sbjct: 64  KVNDPKVDERLIRQEAGMVFQQFYLFPHLT 93

Length = 240

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 46.8 bits (111), Expect = 4e-07
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
          L FS L   L   P+LK+++  ++ GE+LA+ G +G GKT+LL  + G ++   G I+
Sbjct: 40 LFFSNLC--LVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIK 95

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 44  VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKICYVLQQDI 101
              GE+ A++GPSG GK+TLLN +AG     SG + +N   +       R +  + Q++ 
Sbjct: 21  FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENN 80

Query: 102 FFPELTLRQ 110
            F  LT+ Q
Sbjct: 81  LFAHLTVEQ 89

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 11/76 (14%)

Query: 27  LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN 86
           L++   ++  LK+++  +   ++ A++GPSGCGK+TLL  L           R+N     
Sbjct: 7   LNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLN----------RMNDLVPG 56

Query: 87  KRWKRKICYVLQQDIF 102
            R + K+ +   QDI+
Sbjct: 57  VRIEGKVLF-DGQDIY 71

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 46.3 bits (110), Expect = 5e-07
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR---WKRKI 93
           ++DVS   + GE+  ++G +G GKTTLL  +A  +  DSG + ++     +     +RKI
Sbjct: 18  VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77

Query: 94  CYVLQQDIFFPELTLRQTL 112
             +  +   +  LT R+ L
Sbjct: 78  GVLFGERGLYARLTARENL 96

Length = 245

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 24  FSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69
              LS+   D + +L +++  V+PGE L + G SG GKT+LL  LAG
Sbjct: 395 LENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG 441

Length = 604

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 45.6 bits (109), Expect = 8e-07
 Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 5/82 (6%)

Query: 35  PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWK 90
           P+LK++S  +KPGE + ++G +G GK++LL  L   V+L SG I ++   ++K      +
Sbjct: 18  PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLR 77

Query: 91  RKICYVLQQDIFFPELTLRQTL 112
            +I  + Q  + F   T+R  L
Sbjct: 78  SRISIIPQDPVLF-SGTIRSNL 98

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 45.5 bits (108), Expect = 8e-07
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 14/90 (15%)

Query: 36  ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG-----------VIRLNKER 84
           IL  V  VVK GE +A++G SG GK+TLL  LAG   LD G           + ++++E 
Sbjct: 25  ILTGVELVVKRGETIALIGESGSGKSTLLAILAG---LDDGSSGEVSLVGQPLHQMDEEA 81

Query: 85  LNKRWKRKICYVLQQDIFFPELTLRQTLEV 114
             K   + + +V Q  +  P L   + +E+
Sbjct: 82  RAKLRAKHVGFVFQSFMLIPTLNALENVEL 111

Length = 228

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 45.5 bits (108), Expect = 8e-07
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 13/90 (14%)

Query: 24  FSGLSVTLDKRP---ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKL 73
           F  ++     RP   +L+DVS  + PGE+ A++GPSG GK+T++  L        G+V L
Sbjct: 14  FQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLL 73

Query: 74  DSGVIRLNKERLNKRWKRKICYVLQQDIFF 103
           D   I   +   +K    K+  V Q+ + F
Sbjct: 74  DGKPISQYE---HKYLHSKVSLVGQEPVLF 100

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 44.7 bits (105), Expect = 9e-07
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 46 PGELLAVMGPSGCGKTTLLNCLAGRVKLDS-GVIRLNKERLNKRWKRKICYVL 97
          PGE++ ++GP G GKTTL   LA  +     GVI ++ E + +    ++  ++
Sbjct: 1  PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII 53

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 45.9 bits (109), Expect = 9e-07
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG 76
          +VFS L +    R +L + +  + PG+ + ++G +GCGK+TLL  L   +  D G
Sbjct: 2  IVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGG 56

Length = 638

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
          L F G+  T      L D+S   + G++ A+MG +G GK+TLL  L+G  + D+G I ++
Sbjct: 5  LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILID 64

Length = 501

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 10/118 (8%)

Query: 11  EKYPLSHRPLELVFSGLSV-TLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69
           EK   S+ P+ +    L + + D + +   ++  +  G+ +A++GPSG GKT+LLN L G
Sbjct: 339 EKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG 398

Query: 70  RVKLDSGVIRLNKERLN----KRWKRKICYVLQQDIFFPELTLRQTL---EVSIADED 120
            +    G +++N   L     + W++ + +V  Q+   P  TLR  +       +DE 
Sbjct: 399 FLPY-QGSLKINGIELRELDPESWRKHLSWV-GQNPQLPHGTLRDNVLLGNPDASDEQ 454

Length = 588

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL 67
          L  S LSV  +K+  L  VS    P E+ A++GPSG GK+TLL  +
Sbjct: 6  LQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSI 51

Length = 252

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 20/52 (38%), Positives = 33/52 (63%)

Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK 87
          +L +VS  +  GE++A++G SG GK+TLL+ L G     SG +  N + ++K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSK 75

Length = 233

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 44  VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIF 102
              GELL ++GP+G GKTTLL  + G +    G +++      K W R I YV Q+  F
Sbjct: 3   ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGW-RHIGYVPQRHEF 60

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 22/52 (42%), Positives = 33/52 (63%)

Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK 87
          +LK VS  +  GE++A++G SG GK+TLL+ L G     SG +  N + L+K
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSK 71

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 34  RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RW 89
             IL D+S  +K      ++G SG GK+TL   L G  +  SG I LN   L        
Sbjct: 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTL 546

Query: 90  KRKICYVLQQDIFF 103
           ++ I Y+ Q+   F
Sbjct: 547 RQFINYLPQEPYIF 560

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 12/80 (15%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA-------GRVKLDSGVIRLNKER 84
           D   +L +++  +KPGE + ++GPSG GK+TL   L        G+V +D     ++   
Sbjct: 468 DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG----VDLAI 523

Query: 85  LNKRW-KRKICYVLQQDIFF 103
            +  W +R++  VLQ+++ F
Sbjct: 524 ADPAWLRRQMGVVLQENVLF 543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 13/80 (16%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCL------------AGRVKLDSGVIRLNKER 84
           LK ++  ++  ++ A++GPSGCGK+T L  L             G V LD   I  +   
Sbjct: 19  LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78

Query: 85  LNKRWKRKICYVLQQDIFFP 104
           +N+  KR +  V QQ   FP
Sbjct: 79  VNQLRKR-VGMVFQQPNPFP 97

Length = 250

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 2/41 (4%)

Query: 29 VTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69
          V +  R  L  +S  V+ GE+L ++GP+G GK+TLL  +AG
Sbjct: 6  VAVSTR--LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAG 44

Length = 248

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.9 bits (103), Expect = 3e-06
 Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 10/94 (10%)

Query: 25  SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA-------GRVKLDSGV 77
           S L + ++ + ILKD++  +    +  +MGPSG GK+TLL  L         ++K+D  V
Sbjct: 14  SRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKV 73

Query: 78  IRLNKE--RLNK-RWKRKICYVLQQDIFFPELTL 108
           +   K+  +++  + ++++  V QQ   FP L++
Sbjct: 74  LYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSI 107

Length = 257

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG 76
          L+ + +S    +R +L  +   +  G+ +AV+G SGCGK+TLL  LAG     +G
Sbjct: 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG 67

Length = 257

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 3/104 (2%)

Query: 14  PLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL 73
           P S   + +  +G+S +   + ++  +S  V  GE   ++GP+G GK+T+   + G    
Sbjct: 34  PGSMSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP 93

Query: 74  DSGVIRLNKERLNKR---WKRKICYVLQQDIFFPELTLRQTLEV 114
           D+G I +    +  R    + +I  V Q D    E T+R+ L V
Sbjct: 94  DAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLV 137

Length = 340

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 13/90 (14%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL-----NKRWK- 90
           L DV+  +  G  +A++G +G GK+TLL  L G ++  SG + + +  +     NK+ K 
Sbjct: 23  LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82

Query: 91  --RKICYVLQQDIFFPELTL-RQTLEVSIA 117
             +K+  V Q    FPE  L  +T+E  I 
Sbjct: 83  LRKKVGIVFQ----FPEHQLFEETVEKDIC 108

Length = 290

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 19/59 (32%), Positives = 28/59 (47%)

Query: 9  PPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL 67
            +   LS     L    L++    +  L D+S  +    + A +GPSGCGK+TLL C 
Sbjct: 13 LLDVLNLSDEQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCF 71

Length = 272

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
            ++D+S  +  GE++  +G +G GK+T L  L G +   SG +R+N
Sbjct: 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVN 84

Length = 325

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.5 bits (102), Expect = 5e-06
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 11/89 (12%)

Query: 27  LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNC------LAGRVKLDSGVIRL 80
           LS   D + IL+ VS  +   ++ A++GPSGCGK+T L C      L   V+++  V   
Sbjct: 13  LSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFF 72

Query: 81  NK----ERLN-KRWKRKICYVLQQDIFFP 104
           N+     R+N  R +R++  V  +   FP
Sbjct: 73  NQNIYERRVNLNRLRRQVSMVHPKPNLFP 101

Length = 261

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 18/39 (46%), Positives = 29/39 (74%)

Query: 34  RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK 72
           R +L++++  +KPG+++AV+G SG GKTTLL  + G  K
Sbjct: 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK 434

Length = 593

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
           L FS  S  L   P+LK++S  ++ G+LLAV G +G GK++LL  + G ++   G I+
Sbjct: 429 LFFSNFS--LYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIK 484

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 41.9 bits (99), Expect = 6e-06
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 61  TTLLNCLAGRVKLDSGVIRLNKERLN-----KRWKRKICYVLQQDIFFPELTLRQTL 112
           +TLL  + G ++  SG I L+ E        K  +++I  V Q    FPELT+R+ L
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 43.1 bits (102), Expect = 6e-06
 Identities = 24/63 (38%), Positives = 33/63 (52%)

Query: 25 SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84
           GLS     + +L +VS  +K GE +A++G SGCGK+TL   L G      G +    E 
Sbjct: 16 GGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEP 75

Query: 85 LNK 87
          L K
Sbjct: 76 LAK 78

Length = 268

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.2 bits (102), Expect = 7e-06
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--W 89
           ++  L DVS  VK GE L+++G +G GK+T +  + G ++ +SG I ++ + L +   W
Sbjct: 18 QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVW 77

Query: 90 --KRKICYVLQ 98
            + KI  V Q
Sbjct: 78 DIRHKIGMVFQ 88

Length = 279

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 43.2 bits (102), Expect = 7e-06
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 17/83 (20%)

Query: 6   PSLPPEKYPLSHRPLELV----FSGLSVTLDKRP---ILKDVSGVVKPGELLAVMGPSGC 58
           P++P      +  PL L     F  +S +   RP   +LK ++  + PGE++A++GPSG 
Sbjct: 462 PNIPL---TGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGS 518

Query: 59  GKTTLLNCL-------AGRVKLD 74
           GK+T+   L        G+V LD
Sbjct: 519 GKSTVAALLQNLYQPTGGQVLLD 541

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 42.8 bits (102), Expect = 8e-06
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query: 24  FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
              LS +   R ++ D+S  + PG ++ ++GP+G GK+TL   + G+ + DSG I++
Sbjct: 327 AENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383

Length = 556

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYV 96
           LK V+  V PGE+ A++G +G GK+TL+  L+G  +   G I +N    NK    K+   
Sbjct: 21  LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNK-LDHKLAAQ 79

Query: 97  LQQDIFFPELTLRQTLEV 114
           L   I + EL++   L V
Sbjct: 80  LGIGIIYQELSVIDELTV 97

Length = 510

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 7/86 (8%)

Query: 33  KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRK 92
           K+ ILKD+S    PG  + V+G +G GK+TLL  +AG  K  +G  R            K
Sbjct: 17  KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-------GIK 69

Query: 93  ICYVLQQDIFFPELTLRQTLEVSIAD 118
           + Y+ Q+    P  T+R+ +E  +A+
Sbjct: 70  VGYLPQEPQLDPTKTVRENVEEGVAE 95

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 35  PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-------K 87
           P+L +VS  ++ GE + ++G SGCGK+TL   L G  K   G +    + L        +
Sbjct: 25  PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRR 84

Query: 88  RWKRKICYVLQQDI--FFPELTLRQTL 112
            ++R +  V Q       P +T+RQ +
Sbjct: 85  AFRRDVQLVFQDSPSAVNPRMTVRQII 111

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 11/70 (15%)

Query: 31  LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRW- 89
           L+ + +L+DVS  V  G+L  V+G +G GK+TLL  L  + ++  G +          W 
Sbjct: 670 LEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV----------WA 719

Query: 90  KRKICYVLQQ 99
           +R I YV QQ
Sbjct: 720 ERSIAYVPQQ 729

Length = 1560

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRK 92
           + DVS   K G+ +A++GP+G GKTTL+N L        G I ++   +N    +  ++ 
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKS 410

Query: 93  ICYVLQ 98
           I  V Q
Sbjct: 411 IATVFQ 416

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 41  SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
            G +  GE++ ++GP+G GKTT    LAG +K D G +
Sbjct: 359 GGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV 396

Length = 590

>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 15/43 (34%), Positives = 26/43 (60%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
           L  ++  +  G+ +A++G SG GK+TL+N L G     +G +R
Sbjct: 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVR 227

Length = 356

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 21/66 (31%), Positives = 38/66 (57%)

Query: 28 SVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK 87
          S    +   LK+VS  +  GE +A++G +G GK+T+   L G +K  SG I+++   ++K
Sbjct: 16 SYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISK 75

Query: 88 RWKRKI 93
             ++I
Sbjct: 76 ENLKEI 81

Length = 271

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 30   TLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL------AGRVKLDSGVIRLNKE 83
            T   R +L+D+S  V+ G+ + ++G +G GK+TLL+ L       G +++D   +  N  
Sbjct: 1228 TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDG--VSWNSV 1285

Query: 84   RLNKRWKRKICYVLQQDIFFPELTLRQTLE 113
             L   W RK   V+ Q +F    T R+ L+
Sbjct: 1286 TLQT-W-RKAFGVIPQKVFIFSGTFRKNLD 1313

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN 86
          L +V+  V+P  + A+MG +G GK+TLL CL G  + DSG I    + ++
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEID 63

Length = 491

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 28 SVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
           V    R  L  +SG V+ GE+L ++GP+G GK+TLL  +AG     SG I+ 
Sbjct: 8  DVAESTR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-SGSIQF 57

Length = 248

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN 86
          +LK VS     G++++++G SG GK+T L C+    K  +G IR+N E + 
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIR 71

Length = 256

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 27  LSVT-LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85
           L V  L     ++DVS  V+ GE+L + G  G G+T L   L G     SG I L+ + +
Sbjct: 264 LEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPV 323

Query: 86  NKR 88
             R
Sbjct: 324 RIR 326

Length = 500

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 29  VTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69
           V+ + RPIL ++S  V PGE   ++GP+G GK+TLL+ + G
Sbjct: 268 VSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308

Length = 490

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 40.8 bits (95), Expect = 4e-05
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 27 LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS 75
          L+ T ++   L  V   +  GE++A++GPSG GK+TLL  L+G +  D 
Sbjct: 10 LAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDK 58

Length = 262

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 41.1 bits (96), Expect = 4e-05
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 3/99 (3%)

Query: 19  PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
            + +   G+S +   + ++ D+S  +  GE   ++GP+G GK+T+   L G +  D G I
Sbjct: 2   NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61

Query: 79  RLNKERLNKR---WKRKICYVLQQDIFFPELTLRQTLEV 114
            +  E +  R    +  I  V Q D   PE T+R+ L V
Sbjct: 62  TVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLV 100

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258

 Score = 40.2 bits (95), Expect = 4e-05
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 47 GELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK 87
          G+   + G SG GK+TLLN L   + L +G I    E+L +
Sbjct: 35 GKTSVLAGQSGVGKSTLLNALLPELDLRTGEIS---EKLGR 72

Length = 161

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 40.6 bits (95), Expect = 5e-05
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 22  LVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
           +V + ++VT  +    L+D S  V  G + A++G +G GK+TL   L G V+L SG I +
Sbjct: 7   IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISI 66

Query: 81  NKERLNKRWKRK-ICYVLQQ---DIFFPEL 106
             +   +  ++  + YV Q    D  FP L
Sbjct: 67  LGQPTRQALQKNLVAYVPQSEEVDWSFPVL 96

Length = 272

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.6 bits (95), Expect = 5e-05
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV 77
          LK ++  +   ++ A++GPSGCGK+TLL CL     L  GV
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGV 59

Length = 249

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNK---ERLNKR 88
           D   +L++++  V     +A++G +G GK+TL + L G   L  G IRL+      L+  
Sbjct: 352 DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHS 411

Query: 89  WKRKICYVLQQD------IFFPELTL 108
             R+   ++QQD       F   +TL
Sbjct: 412 VLRQGVAMVQQDPVVLADTFLANVTL 437

Length = 592

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 3/99 (3%)

Query: 20  LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
           + +  S L+     +  L +VS   + G ++  +GP+G GK+T +  + G +  DSG ++
Sbjct: 1   MSIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQ 60

Query: 80  LNKERL---NKRWKRKICYVLQQDIFFPELTLRQTLEVS 115
           +  E +    K  +R I Y+ + +  + ++ +R+ L+  
Sbjct: 61  VCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFI 99

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 40.5 bits (96), Expect = 6e-05
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 7/86 (8%)

Query: 33  KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRK 92
           K+ ILKD+S    PG  + V+G +G GK+TLL  +AG  K   G  R            K
Sbjct: 19  KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-------IK 71

Query: 93  ICYVLQQDIFFPELTLRQTLEVSIAD 118
           + Y+ Q+    PE T+R+ +E  +A+
Sbjct: 72  VGYLPQEPQLDPEKTVRENVEEGVAE 97

Length = 556

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.2 bits (94), Expect = 6e-05
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 26  GLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV-----IRL 80
            L++   ++  L D++  +    + A++GPSGCGK+TLL C      L  G      I  
Sbjct: 11  NLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILY 70

Query: 81  NKERLNKRW------KRKICYVLQQDIFFPE 105
           N E +          +RKI  V Q+   FP+
Sbjct: 71  NGENIMDSGADVVALRRKIGMVFQRPNPFPK 101

Length = 253

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 44  VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE 83
           +K GEL+ ++G +G GK+TL   L G  +  SG I L+ +
Sbjct: 346 IKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385

Length = 546

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 39.8 bits (94), Expect = 9e-05
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 22  LVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
           L    LSV        +KDVS  V+ GE++ + G +G G++ L+  ++G  K  SG I L
Sbjct: 258 LEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILL 317

Query: 81  NKERLNKRW 89
           N + +  R 
Sbjct: 318 NGKDVLGRL 326

Length = 501

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 39.7 bits (93), Expect = 9e-05
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 23 VFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL 67
          VF G     +K+ +  DV   +    + A +GPSGCGK+T L CL
Sbjct: 27 VFYG-----EKQAL-FDVDLDIPEKTVTAFIGPSGCGKSTFLRCL 65

Length = 267

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 18 RPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV 77
           P ++    +++    +P++  VS  ++ G +LA++G SG GK+  L C A    L +GV
Sbjct: 1  MPQQIELRNIALQAA-QPLVHGVSLTLQRGRVLALVGGSGSGKS--LTCAAALGILPAGV 57

Query: 78 IRLN 81
           +  
Sbjct: 58 RQTA 61

Length = 254

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85
          +L  ++  V  GE +A++GPSG GK+T+L  L     +D G I++  E+L
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQL 64

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases

 Score = 39.3 bits (93), Expect = 1e-04
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 47  GELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK 87
           G+   ++G SG GK+TLLN L   + L +G I    E+L +
Sbjct: 85  GKTSVLVGQSGVGKSTLLNALLPELVLATGEIS---EKLGR 122

YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 9/78 (11%)

Query: 46  PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-------KRWKRKICYVLQ 98
           PGE L+++G SG GK+T    L   V+   G I  N +R++       +  +R I ++ Q
Sbjct: 349 PGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQ 408

Query: 99  QDIFFPELTLRQTLEVSI 116
               +  L  RQT+  SI
Sbjct: 409 DP--YASLDPRQTVGDSI 424

Length = 623

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE---RLNKR 88
                +  V+  V+ GE+   +GP+G GKTT +  L   ++  SG  R+      R  ++
Sbjct: 4   GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK 63

Query: 89  WKRKICYVLQQDIFFPELTLRQTLEV 114
            +R I  V Q      +LT R+ LE+
Sbjct: 64  VRRSIGIVPQYASVDEDLTGRENLEM 89

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)

Query: 39  DVSGVVKPGELLAVMGPSGCGKTT----LLNCLAGRVKLDSGVIRLNKERLN--KRWKRK 92
           D++  +K GE+LA++G SG GK+     +L  L   +   SG I L+   L       R 
Sbjct: 4   DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63

Query: 93  ICYVLQ--QDIFFPELTLRQ 110
           I  ++Q  +  F P  T+  
Sbjct: 64  IATIMQNPRTAFNPLFTMGN 83

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 12/51 (23%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCL------------AGRVKLDS 75
           LK VS  +    + A++GPSGCGK+T L CL             G V+LD 
Sbjct: 61  LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111

Length = 305

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 13/81 (16%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNC------------LAGRVKLDSGVIRLNKER 84
           LK +S  ++   ++A +GPSGCGK+T L              L G +++D   I     +
Sbjct: 19  LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78

Query: 85  LNKRWKRKICYVLQQDIFFPE 105
           ++   ++ +  V Q+   FP+
Sbjct: 79  VD-ELRKNVGMVFQRPNPFPK 98

Length = 250

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 7/63 (11%)

Query: 37 LKDVSGV---VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG-VIRLNKERL---NKRW 89
          LK V GV   +  GE L V+G SGCGK+T    + G VK   G V  L K+ L   +  W
Sbjct: 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEW 93

Query: 90 KRK 92
          +  
Sbjct: 94 RAV 96

Length = 331

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 13/105 (12%)

Query: 17  HRPLELVFSGLS--VTLDKRPI---LKDVSGVVKPGELLAVMGPSGCGKTTLLNCL---- 67
            R  + +  GLS    L+K  +   +KD S  ++ GE+  +MG SG GK+T++  L    
Sbjct: 19  QRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI 78

Query: 68  ---AGRVKLDS-GVIRLNKERLNKRWKRKICYVLQQDIFFPELTL 108
               G+V +D   + +++   L +  ++KI  V Q     P +T+
Sbjct: 79  EPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTV 123

Length = 400

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 13/69 (18%)

Query: 48  ELLAVMGPSGCGKTTLLNCL------------AGRVKLDSGVIRLNKERLNKRWKRKICY 95
           EL A++GPSGCGK+T L CL             G +K +   I  +K  L +  ++++  
Sbjct: 31  ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE-LRKEVGM 89

Query: 96  VLQQDIFFP 104
           V QQ   FP
Sbjct: 90  VFQQPTPFP 98

Length = 251

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 26 GLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNC 66
           L++    + IL D++  +   E+ A +GPSGCGK+T L C
Sbjct: 10 NLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRC 50

Length = 251

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG 76
          G +   E++ ++GP+G GKTT +  LAG +K D G
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG 54

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 41  SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG 76
            G +  GE++ ++GP+G GKTT +  LAG +K D G
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEG 396

Length = 591

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 21  ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
           E+ F  +S +   + ILKD+S   + G +  ++GPSG GK+TL+  +   +    G I +
Sbjct: 3   EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62

Query: 81  NKERLNK----RWKRKICYVLQQDIFFPELTLRQTLE 113
           +   +        +RKI  V QQ   F E T++  +E
Sbjct: 63  DGVDIKTIDVIDLRRKIGMVFQQPHLF-EGTVKDNIE 98

Length = 241

>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only]

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 46  PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84
            G++  ++G SG GK+TL+N L   +   +G I     R
Sbjct: 163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGR 201

Length = 301

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 22/57 (38%), Positives = 31/57 (54%)

Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
          L F  +S    K   L +VS  +  GE++ ++G +G GKTTLL  L G  +  SG I
Sbjct: 6  LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62

Length = 237

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL 67
          K   LK +       E+ A++GPSGCGK+T L  L
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTL 51

Length = 252

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 27 LSVT-LDKR----PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
          L+V  L KR     +LK VS     G++++++G SG GK+T L C+    K   G I +N
Sbjct: 6  LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVN 65

Query: 82 KERLN 86
           + +N
Sbjct: 66 GQTIN 70

Length = 257

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 21  ELVFSGLSVTL--DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
           E+    LSV    D  P+LK+VS  VK GE + ++G +G GK+TL+  L   ++ + G I
Sbjct: 6   EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI 65

Query: 79  RLNKERLNK----RWKRKICYVLQQDIFFPELTLRQTLEV 114
            ++   ++       +  +  + Q    F   T+R  L+ 
Sbjct: 66  EIDGIDISTIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDP 104

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL 67
          P ++   GLS        L D+S   +  ++ A++GPSGCGK+T L CL
Sbjct: 4  PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCL 52

Length = 253

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 27  LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL- 85
           L++   K  + ++++  +  G   A++GP+GCGK+TLL  L+  +    G + L+ E + 
Sbjct: 13  LTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQ 72

Query: 86  ---NKRWKRKICYVLQQ-----DIFFPELTLR 109
              +K   R+I  + Q      DI   EL  R
Sbjct: 73  HYASKEVARRIGLLAQNATTPGDITVQELVAR 104

Length = 265

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 33  KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85
             P+L+D   ++  G +LA++GP+G GKTT    LA R      V R   ++L
Sbjct: 171 HLPVLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARC-----VAREGADQL 218

Length = 767

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 13/30 (43%), Positives = 22/30 (73%)

Query: 43  VVKPGELLAVMGPSGCGKTTLLNCLAGRVK 72
             +PG+++ ++GP+G GK+T L  LAG +K
Sbjct: 96  TPRPGKVVGILGPNGIGKSTALKILAGELK 125

Length = 591

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 13/80 (16%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCL------------AGRVKLDSGVIRLNKER 84
           LK+++  +   ++ A +GPSGCGK+TLL                G + LD   I   K+ 
Sbjct: 29  LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88

Query: 85  LNKRWKRKICYVLQQDIFFP 104
           +    + K+  V Q+   FP
Sbjct: 89  IA-LLRAKVGMVFQKPTPFP 107

Length = 260

>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed

 Score = 37.8 bits (89), Expect = 5e-04
 Identities = 30/110 (27%), Positives = 41/110 (37%), Gaps = 41/110 (37%)

Query: 34  RP-ILKDVSG---VVKPGELLAVM------------GPSGCGKTTLLNCLAGRVKLD--- 74
           RP  L +V G   ++ PG+ L  M            GP G GKTTL   +AG        
Sbjct: 7   RPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEA 66

Query: 75  -----SGV--IR--LNKERLNKRWKRKICYVL-----------QQDIFFP 104
                SGV  +R  + + R  +   R+   +L           QQD   P
Sbjct: 67  LSAVTSGVKDLREVIEEARQRRSAGRRT--ILFIDEIHRFNKAQQDALLP 114

Length = 413

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 35 PILKDVSGV---VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR-LNKER 84
          P +K +SG    V PG ++A++G +G GK+T++  L G    D+G I  L KE 
Sbjct: 15 PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEV 68

Length = 501

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 36  ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN-----KERLNKRWK 90
           I KD++  +  G+  A +G SGCGK+T+L  +        G I +N     K+   K W+
Sbjct: 400 IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWR 459

Query: 91  RKICYVLQQDIFF 103
            KI  V Q  + F
Sbjct: 460 SKIGVVSQDPLLF 472

Length = 1466

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTL 63
          L  VS  ++ G+ LAV+G SGCGK+TL
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTL 57

Length = 327

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 16/44 (36%), Positives = 28/44 (63%)

Query: 35   PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
            P+L  +S  + P E + ++G +G GK+++LN L   V+L+ G I
Sbjct: 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRI 1296

Length = 1622

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85
          +K VS  ++ G+ LA++G +G GK+TL   LAG ++  SG I +N   L
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL 77

Length = 267

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 2    VSNIPSLPPE-------KYPLSHRPLELVFSGLSVTLDKRP----ILKDVSGVVKPGELL 50
            V N   LP E         P+S  P         V L  RP    +L  +S  V P E +
Sbjct: 1206 VGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKV 1265

Query: 51   AVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
             V+G +G GK+++LN L   V+L+ G I ++
Sbjct: 1266 GVVGRTGAGKSSMLNALFRIVELEKGRIMID 1296

Length = 1495

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 37.2 bits (86), Expect = 6e-04
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 27 LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL 67
          L+   D   ILK+V+  +    + A++GPSGCGK+T +  L
Sbjct: 9  LNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTL 49

Length = 250

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 37.5 bits (87), Expect = 6e-04
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 27 LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNC 66
          L+V       +K+V   +   ++ A +GPSGCGK+T+L C
Sbjct: 16 LNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRC 55

Length = 264

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 9/68 (13%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKR 91
           D  P L  ++  +  G L+AV+G  GCGK++LL+ L   +    G + +         K 
Sbjct: 649 DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHM---------KG 699

Query: 92  KICYVLQQ 99
            + YV QQ
Sbjct: 700 SVAYVPQQ 707

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR--LNKERLNKRWKRKIC 94
          L +VS  +  GE +A++G +G GKTT +  L   +  D+G I      E+  K+ K K  
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82

Query: 95 YV 96
           +
Sbjct: 83 VL 84

Length = 305

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 37.3 bits (86), Expect = 7e-04
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL 67
           L L    +++    +  +K+V+  V+ G + A++GPSGCGKTT L  +
Sbjct: 2  TLLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAI 50

Length = 252

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 17/49 (34%), Positives = 31/49 (63%)

Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85
          +K +S  ++ G+ LA++G +G GK+TL   LAG ++  SG + ++   L
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL 77

Length = 267

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 11  EKYP---LSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL 67
           ++YP    +   + L    LS      P + DVS  ++ GE+L V G  G G+T L+  L
Sbjct: 244 DQYPRLDKAPGEVRLKVDNLS-----GPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVL 298

Query: 68  AGRVKLDSGVIRLNKERLNKR 88
            G +   SG + L+   +  R
Sbjct: 299 YGALPRTSGYVTLDGHEVVTR 319

Length = 501

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 37.3 bits (86), Expect = 8e-04
 Identities = 14/31 (45%), Positives = 23/31 (74%)

Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCL 67
          LK+++ +V   ++ A++GPSGCGK+T L C 
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCF 62

Length = 265

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 37.1 bits (86), Expect = 8e-04
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 15/82 (18%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLL-----------NC-LAGRVKLDSGVIRLNKER 84
           +K+V   +  G++ A++GPSGCGK+T+L            C L GRV  D     L   R
Sbjct: 29  VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG--TDLYDPR 86

Query: 85  LNK-RWKRKICYVLQQDIFFPE 105
           ++    +R+I  V QQ   FP+
Sbjct: 87  VDPVEVRRRIGMVFQQPNPFPK 108

Length = 269

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 37.1 bits (86), Expect = 8e-04
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYV 96
           LK ++  +K GE+ A++G +G GK+TL   L G +K  SG I  + + ++  + RK    
Sbjct: 22  LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPID--YSRKGLMK 79

Query: 97  LQQDI 101
           L++ +
Sbjct: 80  LRESV 84

Length = 283

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 36.8 bits (85), Expect = 8e-04
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84
          GVVK GE++ ++GP+G GKTT +  LAG++  +      +   
Sbjct: 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT 62

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 37.1 bits (86), Expect = 8e-04
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 12/84 (14%)

Query: 39  DVSGVVKPGELLAVMGPSGCGKTTLLNCLAG---------RVKLDSGVI---RLNKERLN 86
           + S  ++ GE+  +MG SG GK+TLL  + G          VK   G +     +   L 
Sbjct: 42  NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101

Query: 87  KRWKRKICYVLQQDIFFPELTLRQ 110
           +    ++  V QQ    P  T+ +
Sbjct: 102 RLRTHRVSMVFQQFALLPWRTVEE 125

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 36.9 bits (85), Expect = 9e-04
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)

Query: 27  LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL------------AGRVKLD 74
           L+V   K   +KDVS       + A++GPSGCGK+T+L  +             G++ LD
Sbjct: 10  LNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLD 69

Query: 75  SGVIRLNKERLNKRWKRKICYVLQQDIFFPELTL 108
              I  ++       +R++  V Q+   FP +++
Sbjct: 70  DTDI-YDRGVDPVSIRRRVGMVFQKPNPFPAMSI 102

Length = 252

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 35  PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKIC 94
           P+L +    ++  E + ++G +G GK+TL+  L G V LD G I   ++ +  R      
Sbjct: 17  PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVAR------ 70

Query: 95  YVLQQD 100
             LQQD
Sbjct: 71  --LQQD 74

Length = 635

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85
          LK ++   + GE++A++GP+G GK+TL     G +K  SG + +  E +
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPI 66

Length = 275

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 15  LSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKT----TLLNCLAGR 70
           LS R L + F     T      +K +S  ++ GE LA++G SG GK+    ++L  L   
Sbjct: 7   LSIRNLSVAFHQEGGT---VEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSP 63

Query: 71  VKLD-SGVIRLNKERLNKRWKRKICYVLQQDI 101
                SG I  + E L    +R++  V    I
Sbjct: 64  AAAHPSGSILFDGEDLLAASERQLRGVRGNKI 95

Length = 534

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 16/43 (37%), Positives = 29/43 (67%)

Query: 27 LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69
          L+   D + +LK++S  ++ GE+L ++G SG GK+ L++ L G
Sbjct: 6  LTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG 48

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 11/88 (12%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN-----KERLN-KRWK 90
           L +V+  ++ GE + ++G +G GK+TL+  L G +K  SG I ++      +++     +
Sbjct: 23  LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82

Query: 91  RKICYVLQQDIFFPELTL-RQTLEVSIA 117
           +K+  V Q    +PE  L  +T+E  IA
Sbjct: 83  KKVGLVFQ----YPEYQLFEETIEKDIA 106

Length = 287

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCL 67
          LK+VS  +    + A++GPSGCGK+T + CL
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCL 58

Length = 258

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCL 67
          L DVS  +   ++ A++GPSGCGK+T L C+
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCI 85

Length = 285

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 10/86 (11%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKERLNK-- 87
           L D++     GE L ++GPSG GK++LL  L       +G + +       +K   +K  
Sbjct: 18  LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI 77

Query: 88  -RWKRKICYVLQQDIFFPELTLRQTL 112
              +R +  V QQ   +P LT+++ L
Sbjct: 78  RDLRRNVGMVFQQYNLWPHLTVQENL 103

Length = 242

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 15/93 (16%)

Query: 26  GLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNC------------LAGRVKL 73
           G++    K  +LK+++      ++ A++GPSGCGK+TLL              L G V L
Sbjct: 9   GVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLL 68

Query: 74  DS-GVIRLNKERLNKRWKRKICYVLQQDIFFPE 105
           D+  +   N + +N R  +++  V QQ   FP+
Sbjct: 69  DNENIYSPNLDVVNLR--KRVGMVFQQPNPFPK 99

Length = 251

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL 67
           + L    L V   K+  +K +    +  ++ A++GPSG GK+T L  L
Sbjct: 18 EIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSL 66

Length = 267

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 11/101 (10%)

Query: 27  LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD-----SGVIRLN 81
           L V      ++K V   +    + A+MGPSGCGK+TLL      ++L+      G +RL 
Sbjct: 10  LRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLF 69

Query: 82  KERLNK------RWKRKICYVLQQDIFFPELTLRQTLEVSI 116
              +          +R++  V Q    FP LT+   + + +
Sbjct: 70  GRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGV 110

Length = 253

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCL 67
          L D++  +   ++ A++GPSGCGK+T L CL
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCL 50

Length = 251

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 10/87 (11%)

Query: 36  ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--------- 86
            L D++     GE L ++GPSG GK++LL  L       SG + +     +         
Sbjct: 17  ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76

Query: 87  -KRWKRKICYVLQQDIFFPELTLRQTL 112
            +  +R +  V QQ   +P LT++Q L
Sbjct: 77  IRELRRNVGMVFQQYNLWPHLTVQQNL 103

Length = 242

>gnl|CDD|222165 pfam13481, AAA_25, AAA domain

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV 71
          L      L         L  V G++  G L  + G  G GK+TL   LA  V
Sbjct: 8  LPSSAEDLDAPPPPLRWL--VKGLLPRGGLTLLAGAPGTGKSTLALDLAAAV 57

This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 9/51 (17%)

Query: 33 KRPI--LKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLD 74
           R I  L +VS  +  GE+  V+G SG GK+TL+ C+       +GRV +D
Sbjct: 15 GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVD 65

Length = 343

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 10  PEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69
           P+K    ++P E++    ++T  ++P ++DVS  +  GE+L + G  G  +T ++  L G
Sbjct: 240 PDK---ENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFG 296

Query: 70  RVKLDSGVIRLNKERLNKR 88
             +  +G I L+ +++N  
Sbjct: 297 IREKSAGTITLHGKKINNH 315

Length = 491

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN 86
           +  +S  ++ G+ L ++G SG GK+TL   L  R+    G IR + + ++
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALL-RLIPSQGEIRFDGQDID 351

Length = 534

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 14/100 (14%)

Query: 34  RPILKDVSGV---VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG--VIRLNKE----- 83
           R ++K V  V   VK GE+  ++G SG GKTTL   +AG ++  SG   +R+  E     
Sbjct: 294 RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMT 353

Query: 84  ----RLNKRWKRKICYVLQQDIFFPELTLRQTLEVSIADE 119
                   R KR I  + Q+   +P  T+   L  +I  E
Sbjct: 354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE 393

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCL 67
          L DV   +   +++A +GPSGCGK+TLL C 
Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCF 66

Length = 274

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 15/43 (34%), Positives = 26/43 (60%)

Query: 25 SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL 67
            L++       ++DV+  ++P  + A +GPSGCGK+T+L  L
Sbjct: 8  KDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTL 50

Length = 258

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 14/30 (46%), Positives = 23/30 (76%)

Query: 43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVK 72
          V + G++L ++GP+G GK+T L  LAG++K
Sbjct: 22 VPREGQVLGLVGPNGIGKSTALKILAGKLK 51

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 14/41 (34%), Positives = 26/41 (63%)

Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV 77
          LK+++  +   E+ A++GPSGCGK+T +  L   +++   V
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNV 68

Length = 259

>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 10/84 (11%)

Query: 36  ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL------AGRVKLDSGVIRLNKERLNKRW 89
           +L+++S  + PG+ + ++G +G GK+TLL+         G +++D   +  N   L K W
Sbjct: 19  VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDG--VSWNSVPLQK-W 75

Query: 90  KRKICYVLQQDIFFPELTLRQTLE 113
            RK   V+ Q +F    T R+ L+
Sbjct: 76  -RKAFGVIPQKVFIFSGTFRKNLD 98

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 35.5 bits (82), Expect = 0.002
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 26 GLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85
           +S  +  R +L  +S     G++  ++G +G GK+TLL  L        G I L+ + L
Sbjct: 16 NVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPL 75

Query: 86 ----NKRWKRKICYVLQQ 99
              +K + RK+ Y+ QQ
Sbjct: 76 ESWSSKAFARKVAYLPQQ 93

Length = 265

>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol utilisation

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 52 VMGPSGCGKTTLLNCLAG 69
          ++G SGCGKTTL   L G
Sbjct: 6  LIGRSGCGKTTLTQALNG 23

Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood. Length = 143

>gnl|CDD|206669 cd01882, BMS1, Bms1, an essential GTPase, promotes assembly of preribosomal RNA processing complexes

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 39 DVSGVVKPGELLAVMGPSGCGKTTLLNCL 67
          D +    P  ++ V+GP G GK+TL+  L
Sbjct: 31 DRTPEEPPPLVVVVVGPPGVGKSTLIRSL 59

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. Length = 231

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL 73
          +    L V+  +  +L  V+  +    + A+MGPSG GK+TLL      ++L
Sbjct: 4  IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIEL 55

Length = 250

>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and metabolism]

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 44 VKPGELLAVMGPSGCGKTTLLNCLAGRVKL 73
          +  G L+ + GPSG GK+TL+  L    KL
Sbjct: 1  MSKGLLIVLSGPSGVGKSTLVKALLEDDKL 30

Length = 191

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 34.9 bits (80), Expect = 0.004
 Identities = 15/41 (36%), Positives = 25/41 (60%)

Query: 24 FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLL 64
              S    ++  +K+V+  +   ++ A++GPSGCGKTTLL
Sbjct: 6  IENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLL 46

Length = 250

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.97
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.97
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.97
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.97
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.97
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.96
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.96
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.96
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.96
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.96
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.96
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.96
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.96
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.96
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.96
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.96
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.96
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.96
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.96
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.96
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.95
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.95
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.95
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.95
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.95
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.95
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.95
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.95
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.95
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.95
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.95
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.95
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.95
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.95
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.95
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.95
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.95
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.95
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.95
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.95
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.95
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.95
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.95
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.95
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.95
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.95
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.95
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.95
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.95
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.95
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.95
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.95
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.95
PRK10908	222	cell division protein FtsE; Provisional	99.95
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.95
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.95
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.95
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.95
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.95
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.95
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.95
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.95
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.95
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.95
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.95
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.95
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.95
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.95
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.95
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.94
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.94
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.94
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.94
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.94
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.94
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.94
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.94
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.94
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.94
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.94
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.94
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.94
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.94
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.94
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.94
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.94
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.94
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.94
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.94
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.94
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.94
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.94
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.94
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.94
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.94
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.94
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.94
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.94
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.94
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.94
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.94
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.94
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.94
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.94
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.94
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.94
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.94
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.94
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.94
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.94
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.94
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.94
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.94
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.94
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.94
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.94
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.94
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.94
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.94
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.94
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.94
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.94
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.94
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
KOG0058|consensus	716		99.94
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.94
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.94
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.94
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.94
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.94
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.94
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.94
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.94
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.93
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.93
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
KOG0057|consensus	591		99.93
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.93
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.93
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.93
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.93
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.93
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.93
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.93
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.93
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.93
cd03246	173	ABCC_Protease_Secretion This family represents the	99.93
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.93
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.93
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.93
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.93
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.93
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.93
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.93
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.93
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.93
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.93
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.93
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.93
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.93
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.93
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.93
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.93
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.93
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.93
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.93
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.93
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.93
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.93
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.93
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.93
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.93
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.93
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.93
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.93
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.93
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.93
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.93
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.93
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.93
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.93
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.93
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.93
COG4988	559	CydD ABC-type transport system involved in cytochr	99.93
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.93
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.93
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.93
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.93
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.93
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.93
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.93
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.93
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.93
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.92
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.92
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.92
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.92
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.92
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.92
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.92
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.92
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.92
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.92
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.92
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.92
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.92
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.92
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.92
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.92
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.92
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.92
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.92
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.92
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.92
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.92
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.92
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.92
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.92
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.92
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.92
COG4559	259	ABC-type hemin transport system, ATPase component	99.92
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.92
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.92
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.92
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.91
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.91
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.91
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.91
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.91
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.91
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.91
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.91
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.91
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.91
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.91
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.91
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.91
COG4181	228	Predicted ABC-type transport system involved in ly	99.91
PLN03130	1622	ABC transporter C family member; Provisional	99.91
PLN03211	659	ABC transporter G-25; Provisional	99.91
PLN03232	1495	ABC transporter C family member; Provisional	99.91
KOG0055|consensus	1228		99.9
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.9
COG4987	573	CydC ABC-type transport system involved in cytochr	99.9
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.9
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.9
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.9
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.9
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.9
PTZ00243	1560	ABC transporter; Provisional	99.9
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.9
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.9
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.9
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.9
KOG0056|consensus	790		99.9
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.89
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.89
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.89
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.89
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.89
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.89
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.89
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.89
PRK10938	490	putative molybdenum transport ATP-binding protein	99.89
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.89
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.89
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.89
PRK11147	635	ABC transporter ATPase component; Reviewed	99.89
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.89
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.89
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.89
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.89
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.88
KOG0055|consensus	1228		99.88
COG1123	539	ATPase components of various ABC-type transport sy	99.88
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.88
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.88
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.88
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.88
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.88
PRK10938	490	putative molybdenum transport ATP-binding protein	99.87
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.87
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.87
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.87
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.87
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.87
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.87
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.86
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.86
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.86
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.86
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.86
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.86
COG0488	530	Uup ATPase components of ABC transporters with dup	99.85
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.85
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.85
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.85
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.85
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.85
PLN03140	1470	ABC transporter G family member; Provisional	99.85
PRK11147	635	ABC transporter ATPase component; Reviewed	99.84
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.84
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.84
PRK13409	590	putative ATPase RIL; Provisional	99.84
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.84
KOG0054|consensus	1381		99.84
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.84
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.84
KOG0061|consensus	613		99.83
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.83
PLN03130	1622	ABC transporter C family member; Provisional	99.83
PLN03232	1495	ABC transporter C family member; Provisional	99.83
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.83
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.83
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.83
COG1123	539	ATPase components of various ABC-type transport sy	99.83
PLN03140	1470	ABC transporter G family member; Provisional	99.83
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.82
PLN03073	718	ABC transporter F family; Provisional	99.82
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.82
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.81
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.8
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.8
COG4172	534	ABC-type uncharacterized transport system, duplica	99.78
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.77
KOG0059|consensus	885		99.77
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.77
COG0488	530	Uup ATPase components of ABC transporters with dup	99.76
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.75
PTZ00243	1560	ABC transporter; Provisional	99.75
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.75
PRK13409	590	putative ATPase RIL; Provisional	99.74
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.74
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.72
KOG0054|consensus	1381		99.72
PLN03073	718	ABC transporter F family; Provisional	99.71
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.7
KOG0065|consensus	1391		99.67
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.67
COG4172	534	ABC-type uncharacterized transport system, duplica	99.65
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.59
COG4178	604	ABC-type uncharacterized transport system, permeas	99.58
KOG0060|consensus	659		99.53
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.53
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.46
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.46
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.45
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.44
KOG0064|consensus	728		99.4
KOG2355|consensus	291		99.39
KOG0927|consensus	614		99.36
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.34
KOG0066|consensus	807		99.32
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.32
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.32
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	99.27
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.27
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	99.27
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.26
KOG0927|consensus	614		99.25
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	99.24
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.21
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.21
KOG0062|consensus	582		99.2
KOG0065|consensus	1391		99.19
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.17
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.16
PRK09825	176	idnK D-gluconate kinase; Provisional	99.12
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.09
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.02
PRK08149	428	ATP synthase SpaL; Validated	99.0
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.99
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.99
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	98.97
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.97
PRK09862	506	putative ATP-dependent protease; Provisional	98.96
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.95
PRK01889	356	GTPase RsgA; Reviewed	98.94
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.94
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.93
PRK10416	318	signal recognition particle-docking protein FtsY;	98.91
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.89
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.88
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.86
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.85
TIGR00767	415	rho transcription termination factor Rho. Members	98.85
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.85
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.85
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.84
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.83
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	98.82
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	98.81
PRK03846	198	adenylylsulfate kinase; Provisional	98.81
PRK00300	205	gmk guanylate kinase; Provisional	98.8
PRK09099	441	type III secretion system ATPase; Provisional	98.78
PRK00635	1809	excinuclease ABC subunit A; Provisional	98.77
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.77
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	98.76
PLN02318	656	phosphoribulokinase/uridine kinase	98.75
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.73
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	98.72
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.72
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.72
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	98.7
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.68
PRK00098	298	GTPase RsgA; Reviewed	98.67
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	98.67
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.66
PRK06315	442	type III secretion system ATPase; Provisional	98.66
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	98.65
PLN02796	347	D-glycerate 3-kinase	98.65
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.64
PRK05922	434	type III secretion system ATPase; Validated	98.63
KOG0066|consensus	807		98.63
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.62
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	98.62
PRK04863	1486	mukB cell division protein MukB; Provisional	98.62
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.61
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.59
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.58
PRK11545	163	gntK gluconate kinase 1; Provisional	98.58
PRK00635	1809	excinuclease ABC subunit A; Provisional	98.57
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	98.57
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	98.57
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	98.56
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	98.55
KOG0062|consensus	582		98.54
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	98.54
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.54
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	98.54
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	98.53
PRK05480	209	uridine/cytidine kinase; Provisional	98.51
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.5
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	98.49
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.49
PRK06936	439	type III secretion system ATPase; Provisional	98.49
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.47
PRK06820	440	type III secretion system ATPase; Validated	98.46
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.45
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.44
PRK00889	175	adenylylsulfate kinase; Provisional	98.43
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	98.42
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.41
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.38
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.37
smart00382	148	AAA ATPases associated with a variety of cellular	98.36
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.34
PRK15494	339	era GTPase Era; Provisional	98.34
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.33
PRK10246	1047	exonuclease subunit SbcC; Provisional	98.33
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.33
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	98.32
PLN03046	460	D-glycerate 3-kinase; Provisional	98.31
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	98.31
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	98.3
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.3
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.29
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.29
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.27
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	98.26
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.25
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.25
PRK08927	442	fliI flagellum-specific ATP synthase; Validated	98.25
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	98.24
cd01128	249	rho_factor Transcription termination factor rho is	98.23
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.23
PRK13851	344	type IV secretion system protein VirB11; Provision	98.22
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	98.22
PLN02165	334	adenylate isopentenyltransferase	98.21
PRK07429	327	phosphoribulokinase; Provisional	98.21

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=3.7e-33  Score=213.68  Aligned_cols=98  Identities=34%  Similarity=0.536  Sum_probs=93.4

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEe
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVL   97 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~   97 (121)
                      ..++++++++.|++..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|+++..  ..+|.+++||
T Consensus         4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VF   83 (352)
T COG3842           4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVF   83 (352)
T ss_pred             ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceee
Confidence            35899999999999999999999999999999999999999999999999999999999999999974  4578899999


Q ss_pred             eCCCCCCCCCHHHHHhhccc
Q psy16345         98 QQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        98 Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      |+.+|||+|||+||+.|++.
T Consensus        84 Q~YALFPHltV~~NVafGLk  103 (352)
T COG3842          84 QSYALFPHMTVEENVAFGLK  103 (352)
T ss_pred             cCcccCCCCcHHHHhhhhhh
Confidence            99999999999999999986

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=7.1e-33  Score=199.02  Aligned_cols=96  Identities=35%  Similarity=0.604  Sum_probs=90.9

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-----hhhcccEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-----KRWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-----~~~~~~i~~   95 (121)
                      +|+++|++++||+..+|++||+++.+||+++|+||||||||||||||.+|..|++|+|.++|.++.     ..+|+++|+
T Consensus         2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm   81 (240)
T COG1126           2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM   81 (240)
T ss_pred             eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence            589999999999999999999999999999999999999999999999999999999999998764     257889999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |||+++|||++||.||+.++.
T Consensus        82 VFQ~fnLFPHlTvleNv~lap  102 (240)
T COG1126          82 VFQQFNLFPHLTVLENVTLAP  102 (240)
T ss_pred             ecccccccccchHHHHHHhhh
Confidence            999999999999999999875

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.8e-32  Score=208.91  Aligned_cols=98  Identities=31%  Similarity=0.539  Sum_probs=92.4

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEe
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVL   97 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~   97 (121)
                      .+|+++|+++.|++..+++++||+|++||+++|+||||||||||||+|+||+.|++|+|.++|++++.  ...|.++|||
T Consensus         2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF   81 (338)
T COG3839           2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF   81 (338)
T ss_pred             cEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence            46899999999988659999999999999999999999999999999999999999999999999974  4578899999


Q ss_pred             eCCCCCCCCCHHHHHhhccc
Q psy16345         98 QQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        98 Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      |+..|||+|||+||+.|++.
T Consensus        82 Q~yALyPhmtV~~Niaf~Lk  101 (338)
T COG3839          82 QNYALYPHMTVYENIAFGLK  101 (338)
T ss_pred             CCccccCCCcHHHHhhhhhh
Confidence            99999999999999999985

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.1e-31  Score=194.65  Aligned_cols=96  Identities=34%  Similarity=0.566  Sum_probs=91.0

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD  100 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~  100 (121)
                      .++++++++.|+...+|+|+||+|.+||+++|+||||||||||||+|+|+++|++|+|.++|+++ ......++||||++
T Consensus         3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v-~~p~~~~~~vFQ~~   81 (248)
T COG1116           3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV-TGPGPDIGYVFQED   81 (248)
T ss_pred             eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc-CCCCCCEEEEeccC
Confidence            58899999999999999999999999999999999999999999999999999999999999998 44567899999999


Q ss_pred             CCCCCCCHHHHHhhccc
Q psy16345        101 IFFPELTLRQTLEVSIA  117 (121)
Q Consensus       101 ~l~~~ltv~e~l~~~~~  117 (121)
                      .|+|++||+||+.+++.
T Consensus        82 ~LlPW~Tv~~NV~l~l~   98 (248)
T COG1116          82 ALLPWLTVLDNVALGLE   98 (248)
T ss_pred             cccchhhHHhhheehhh
Confidence            99999999999999875

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.97  E-value=3.9e-31  Score=194.18  Aligned_cols=95  Identities=33%  Similarity=0.548  Sum_probs=90.9

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYV   96 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v   96 (121)
                      ||+++|+++.|+++.+++++||+|++||+++++|||||||||+||+|.+|+.|++|+|+++|+++..    .+|++||||
T Consensus         1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv   80 (309)
T COG1125           1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV   80 (309)
T ss_pred             CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence            4899999999999999999999999999999999999999999999999999999999999999863    689999999


Q ss_pred             eeCCCCCCCCCHHHHHhhc
Q psy16345         97 LQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~  115 (121)
                      -|...|||++||.||+.+-
T Consensus        81 iQqigLFPh~Tv~eNIa~V   99 (309)
T COG1125          81 IQQIGLFPHLTVAENIATV   99 (309)
T ss_pred             hhhcccCCCccHHHHHHhh
Confidence            9999999999999999864

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.97  E-value=2e-30  Score=188.75  Aligned_cols=100  Identities=28%  Similarity=0.491  Sum_probs=93.5

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhccc
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKRK   92 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~~   92 (121)
                      ..|++++++++||++.++++++|+|++||+++|+|+||||||||||+|.|+++|++|+|+++|+++.+       ..+++
T Consensus         7 ~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r   86 (263)
T COG1127           7 PLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKR   86 (263)
T ss_pred             ceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhh
Confidence            45999999999999999999999999999999999999999999999999999999999999999852       46889


Q ss_pred             EEEEeeCCCCCCCCCHHHHHhhcccCc
Q psy16345         93 ICYVLQQDIFFPELTLRQTLEVSIADE  119 (121)
Q Consensus        93 i~~v~Q~~~l~~~ltv~e~l~~~~~~~  119 (121)
                      +|++||+-+||..+||+||+.|.+.++
T Consensus        87 ~GvlFQ~gALFssltV~eNVafplre~  113 (263)
T COG1127          87 MGVLFQQGALFSSLTVFENVAFPLREH  113 (263)
T ss_pred             eeEEeeccccccccchhHhhheehHhh
Confidence            999999999999999999999977543

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=3.3e-30  Score=187.15  Aligned_cols=97  Identities=33%  Similarity=0.516  Sum_probs=91.3

Q ss_pred             cEEEEeeeEEEc-CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-------hhhcc
Q psy16345         20 LELVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-------KRWKR   91 (121)
Q Consensus        20 ~~i~~~~l~~~~-~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-------~~~~~   91 (121)
                      ++|+++||++.| +++++|++|||+|++||+++|||+||||||||||+|.|+.+|++|+|.++|.++.       +.+|+
T Consensus         2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~   81 (258)
T COG3638           2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR   81 (258)
T ss_pred             ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence            469999999999 7899999999999999999999999999999999999999999999999998875       25788


Q ss_pred             cEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         92 KICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        92 ~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++||+||+++|.+.++|.+|++.+.
T Consensus        82 ~iGmIfQ~~nLv~r~sv~~NVl~gr  106 (258)
T COG3638          82 DIGMIFQQFNLVPRLSVLENVLLGR  106 (258)
T ss_pred             hceeEeccCCcccccHHHHHHHhhh
Confidence            9999999999999999999999875

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.97  E-value=1.9e-30  Score=191.73  Aligned_cols=97  Identities=34%  Similarity=0.504  Sum_probs=91.4

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICYV   96 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~v   96 (121)
                      +++++|++++|+++++++++||++++|++++|+||||||||||||+|+|+++|.+|+|.++|+++.    +++.+.++||
T Consensus         2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v   81 (258)
T COG1120           2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV   81 (258)
T ss_pred             eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence            589999999999999999999999999999999999999999999999999999999999999985    4688899999


Q ss_pred             eeCCCCCCCCCHHHHHhhccc
Q psy16345         97 LQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      ||.+...+.+||+|.+.+|..
T Consensus        82 pQ~~~~~~~~tV~d~V~~GR~  102 (258)
T COG1120          82 PQSPSAPFGLTVYELVLLGRY  102 (258)
T ss_pred             ccCCCCCCCcEEeehHhhcCC
Confidence            999888788999999999864

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2e-30  Score=194.20  Aligned_cols=98  Identities=33%  Similarity=0.565  Sum_probs=90.8

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCE---eCCh--hhcccEE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE---RLNK--RWKRKIC   94 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~---~~~~--~~~~~i~   94 (121)
                      ++|.++++++.|++..+++||+++|+.||.+||+||||||||||||+|+||+.|+.|.|.++|+   +..+  ...++||
T Consensus         1 m~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG   80 (345)
T COG1118           1 MSIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG   80 (345)
T ss_pred             CceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence            3588999999999999999999999999999999999999999999999999999999999999   4433  3567899


Q ss_pred             EEeeCCCCCCCCCHHHHHhhccc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      ||||+..+|++|||.+|++||+.
T Consensus        81 fvFQ~YALF~HmtVa~NIAFGl~  103 (345)
T COG1118          81 FVFQHYALFPHMTVADNIAFGLK  103 (345)
T ss_pred             EEEechhhcccchHHhhhhhccc
Confidence            99999999999999999999983

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=1.5e-29  Score=183.03  Aligned_cols=96  Identities=35%  Similarity=0.496  Sum_probs=91.2

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~   95 (121)
                      ++++++++..|+...+|++|||++++||+++|+|+||+|||||||+|+|+.++.+|+|.++|+++..     ..+..++|
T Consensus         3 mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~   82 (237)
T COG0410           3 MLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAY   82 (237)
T ss_pred             ceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEe
Confidence            5899999999999999999999999999999999999999999999999999999999999999962     46778999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |||...+|+.|||+||+.++.
T Consensus        83 VPegR~iF~~LTVeENL~~g~  103 (237)
T COG0410          83 VPEGRRIFPRLTVEENLLLGA  103 (237)
T ss_pred             CcccccchhhCcHHHHHhhhh
Confidence            999999999999999999875

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.96  E-value=6.4e-30  Score=180.85  Aligned_cols=97  Identities=30%  Similarity=0.468  Sum_probs=90.5

Q ss_pred             EEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhccc
Q psy16345         21 ELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKRK   92 (121)
Q Consensus        21 ~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~~   92 (121)
                      +|++++|++.|++ +++|+||||+|++||++-|+||||||||||||+|++.++|+.|+|+++|.++.+       -+|++
T Consensus         1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~   80 (223)
T COG2884           1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ   80 (223)
T ss_pred             CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence            4899999999965 569999999999999999999999999999999999999999999999999862       47899


Q ss_pred             EEEEeeCCCCCCCCCHHHHHhhccc
Q psy16345         93 ICYVLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        93 i~~v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      ||+||||..|.++.||+||++|.+.
T Consensus        81 IGvVFQD~rLL~~~tvyeNVA~pL~  105 (223)
T COG2884          81 IGVVFQDFRLLPDRTVYENVALPLR  105 (223)
T ss_pred             eeeEeeeccccccchHhhhhhhhhh
Confidence            9999999999999999999999874

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.96  E-value=3.5e-29  Score=181.87  Aligned_cols=94  Identities=36%  Similarity=0.550  Sum_probs=85.5

Q ss_pred             EEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hh
Q psy16345         22 LVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RW   89 (121)
Q Consensus        22 i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~   89 (121)
                      ++++++++.|+.    ..+|+++||+|++||+++|+|||||||||||++|.|+..|++|.+.++|.++..        -+
T Consensus         2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R   81 (226)
T COG1136           2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR   81 (226)
T ss_pred             cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence            678999999854    369999999999999999999999999999999999999999999999988751        24


Q ss_pred             cccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         90 KRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ++.+|||||+.+|.|.+|+.||+.+.
T Consensus        82 ~~~iGfvFQ~~nLl~~ltv~ENv~lp  107 (226)
T COG1136          82 RKKIGFVFQNFNLLPDLTVLENVELP  107 (226)
T ss_pred             HHhEEEECccCCCCCCCCHHHHHHhH
Confidence            66799999999999999999999964

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.96  E-value=4e-29  Score=188.33  Aligned_cols=96  Identities=39%  Similarity=0.578  Sum_probs=90.3

Q ss_pred             EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEE
Q psy16345         21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYV   96 (121)
Q Consensus        21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v   96 (121)
                      .++++|+++.|+ ++++|++|||+|++|+++||+||||||||||+|+|+|+.+|++|+|.++|.+..+   ..++++||+
T Consensus         4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~   83 (293)
T COG1131           4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV   83 (293)
T ss_pred             eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence            478899999999 6999999999999999999999999999999999999999999999999988863   567889999


Q ss_pred             eeCCCCCCCCCHHHHHhhcc
Q psy16345         97 LQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +|++.+++.+|++||+.|..
T Consensus        84 ~~~~~~~~~lT~~e~l~~~~  103 (293)
T COG1131          84 PQEPSLYPELTVRENLEFFA  103 (293)
T ss_pred             ccCCCCCccccHHHHHHHHH
Confidence            99999999999999999855

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.96  E-value=8.1e-29  Score=190.77  Aligned_cols=98  Identities=33%  Similarity=0.516  Sum_probs=90.9

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEe
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVL   97 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~   97 (121)
                      .+|+++|++++|+++.+|+++||++++|++++|+||||||||||||+|+|+++|++|+|.++|+++..  ..++.++|||
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~   82 (353)
T TIGR03265         3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF   82 (353)
T ss_pred             cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence            36999999999998889999999999999999999999999999999999999999999999998853  3467899999


Q ss_pred             eCCCCCCCCCHHHHHhhccc
Q psy16345         98 QQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        98 Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      |++.+||++||+||+.|+..
T Consensus        83 Q~~~lfp~~tv~eNi~~~~~  102 (353)
T TIGR03265        83 QSYALFPNLTVADNIAYGLK  102 (353)
T ss_pred             CCcccCCCCcHHHHHHHHHH
Confidence            99999999999999998753

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1e-28  Score=190.03  Aligned_cols=98  Identities=28%  Similarity=0.557  Sum_probs=90.9

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEe
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVL   97 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~   97 (121)
                      .+|+++|+++.|+++.+|+++||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..  ..++.++|||
T Consensus         5 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vf   84 (351)
T PRK11432          5 NFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVF   84 (351)
T ss_pred             cEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence            36999999999998889999999999999999999999999999999999999999999999998853  3457899999


Q ss_pred             eCCCCCCCCCHHHHHhhccc
Q psy16345         98 QQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        98 Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      |++.+||++||+||+.|+..
T Consensus        85 Q~~~lfp~~tv~eNi~~~l~  104 (351)
T PRK11432         85 QSYALFPHMSLGENVGYGLK  104 (351)
T ss_pred             CCcccCCCCCHHHHHHHHHh
Confidence            99999999999999998753

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=9e-29  Score=190.71  Aligned_cols=97  Identities=29%  Similarity=0.559  Sum_probs=89.9

Q ss_pred             EEEEeeeEEEc-CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEe
Q psy16345         21 ELVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVL   97 (121)
Q Consensus        21 ~i~~~~l~~~~-~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~   97 (121)
                      +++++|++++| +++.+|+++||++++|++++|+||||||||||||+|+|+++|++|+|.++|+++..  ..++.++|||
T Consensus         3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~   82 (356)
T PRK11650          3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF   82 (356)
T ss_pred             EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence            58999999999 77889999999999999999999999999999999999999999999999998853  3457899999


Q ss_pred             eCCCCCCCCCHHHHHhhccc
Q psy16345         98 QQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        98 Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      |++.+||++||+||+.++..
T Consensus        83 Q~~~lfp~~tv~eNi~~~~~  102 (356)
T PRK11650         83 QNYALYPHMSVRENMAYGLK  102 (356)
T ss_pred             CCccccCCCCHHHHHHhHHh
Confidence            99999999999999998753

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.96  E-value=1.8e-28  Score=190.09  Aligned_cols=98  Identities=30%  Similarity=0.554  Sum_probs=90.8

Q ss_pred             ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEE
Q psy16345         19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYV   96 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v   96 (121)
                      ..+|+++|+++.|+++.+|+++||++++|++++|+||||||||||||+|+|+++|++|+|.++|+++..  ..++.++||
T Consensus        12 ~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v   91 (375)
T PRK09452         12 SPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTV   91 (375)
T ss_pred             CceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence            346999999999998889999999999999999999999999999999999999999999999998853  345789999


Q ss_pred             eeCCCCCCCCCHHHHHhhcc
Q psy16345         97 LQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ||++.+||++||+||+.|+.
T Consensus        92 fQ~~~lfp~ltv~eNi~~~l  111 (375)
T PRK09452         92 FQSYALFPHMTVFENVAFGL  111 (375)
T ss_pred             ecCcccCCCCCHHHHHHHHH
Confidence            99999999999999999875

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.96  E-value=2e-28  Score=185.36  Aligned_cols=96  Identities=29%  Similarity=0.428  Sum_probs=89.3

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYV   96 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v   96 (121)
                      .+++++|++++|+++.+|+++||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.++.+   ..+++++|+
T Consensus         6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v   85 (306)
T PRK13537          6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVV   85 (306)
T ss_pred             ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEE
Confidence            36999999999998899999999999999999999999999999999999999999999999998753   456789999


Q ss_pred             eeCCCCCCCCCHHHHHhhc
Q psy16345         97 LQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +|++.+++.+|++||+.+.
T Consensus        86 ~q~~~~~~~~tv~e~l~~~  104 (306)
T PRK13537         86 PQFDNLDPDFTVRENLLVF  104 (306)
T ss_pred             eccCcCCCCCcHHHHHHHH
Confidence            9999999999999999863

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=3.7e-28  Score=188.50  Aligned_cols=99  Identities=32%  Similarity=0.536  Sum_probs=91.3

Q ss_pred             ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEE
Q psy16345         19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYV   96 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v   96 (121)
                      ..+|+++++++.|++.++|+++||++++|++++|+||||||||||||+|+|+++|++|+|.++|+++..  ..++.++||
T Consensus        17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v   96 (377)
T PRK11607         17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM   96 (377)
T ss_pred             CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence            346999999999988889999999999999999999999999999999999999999999999998753  356789999


Q ss_pred             eeCCCCCCCCCHHHHHhhccc
Q psy16345         97 LQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      ||++.+|+++||+||+.++..
T Consensus        97 fQ~~~lfp~ltv~eNi~~~l~  117 (377)
T PRK11607         97 FQSYALFPHMTVEQNIAFGLK  117 (377)
T ss_pred             eCCCccCCCCCHHHHHHHHHH
Confidence            999999999999999998753

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=5.8e-29  Score=186.49  Aligned_cols=97  Identities=24%  Similarity=0.373  Sum_probs=89.7

Q ss_pred             EEEEeeeEEEcCC-----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-------hh
Q psy16345         21 ELVFSGLSVTLDK-----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-------KR   88 (121)
Q Consensus        21 ~i~~~~l~~~~~~-----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-------~~   88 (121)
                      +|+++++++.|..     ..+++||||+|++|+++||||.||||||||+|||.+|..|++|+|.++|+++.       +.
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~   80 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ   80 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence            4899999999975     36999999999999999999999999999999999999999999999998875       25


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhccc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      .|++|||+||+++|+...||++|++|.+.
T Consensus        81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLe  109 (339)
T COG1135          81 LRQKIGMIFQHFNLLSSRTVFENVAFPLE  109 (339)
T ss_pred             HHhhccEEeccccccccchHHhhhhhhHh
Confidence            78899999999999999999999999874

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.96  E-value=2.7e-28  Score=187.89  Aligned_cols=96  Identities=28%  Similarity=0.544  Sum_probs=89.5

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEee
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQ   98 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q   98 (121)
                      +|+++++++.|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..  ..++.++||||
T Consensus         2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q   81 (353)
T PRK10851          2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ   81 (353)
T ss_pred             EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence            5899999999998889999999999999999999999999999999999999999999999998853  34568999999


Q ss_pred             CCCCCCCCCHHHHHhhcc
Q psy16345         99 QDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.+|+++|++||+.++.
T Consensus        82 ~~~l~p~~tv~eni~~~~   99 (353)
T PRK10851         82 HYALFRHMTVFDNIAFGL   99 (353)
T ss_pred             CcccCCCCcHHHHHHhhh
Confidence            999999999999999875

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.96  E-value=4.5e-28  Score=185.82  Aligned_cols=97  Identities=26%  Similarity=0.382  Sum_probs=89.7

Q ss_pred             ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEE
Q psy16345         19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICY   95 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~   95 (121)
                      +.+|+++|++++|+++.+|+++||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.++..   ..++.++|
T Consensus        39 ~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~  118 (340)
T PRK13536         39 TVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGV  118 (340)
T ss_pred             ceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEE
Confidence            346999999999999999999999999999999999999999999999999999999999999998752   45678999


Q ss_pred             EeeCCCCCCCCCHHHHHhhc
Q psy16345         96 VLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ++|++.+++.+|++||+.+.
T Consensus       119 v~q~~~~~~~~tv~e~l~~~  138 (340)
T PRK13536        119 VPQFDNLDLEFTVRENLLVF  138 (340)
T ss_pred             EeCCccCCCCCcHHHHHHHH
Confidence            99999999999999999853

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.96  E-value=2.9e-28  Score=177.48  Aligned_cols=94  Identities=33%  Similarity=0.609  Sum_probs=86.3

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhcccEE
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKRKIC   94 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~~i~   94 (121)
                      ++++|+++.|+++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++..       .+++.++
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~   80 (235)
T cd03261           1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG   80 (235)
T ss_pred             CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence            468999999988889999999999999999999999999999999999999999999999988642       3467899


Q ss_pred             EEeeCCCCCCCCCHHHHHhhc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      |++|++.+++.+|++||+.++
T Consensus        81 ~v~q~~~~~~~~tv~~~l~~~  101 (235)
T cd03261          81 MLFQSGALFDSLTVFENVAFP  101 (235)
T ss_pred             EEccCcccCCCCcHHHHHHHH
Confidence            999999999989999999875

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.95  E-value=7e-28  Score=176.02  Aligned_cols=96  Identities=32%  Similarity=0.484  Sum_probs=87.8

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEee
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQ   98 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q   98 (121)
                      +++++|+++.|+++++|+++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|.++..  ..++.++|++|
T Consensus         2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q   81 (239)
T cd03296           2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ   81 (239)
T ss_pred             EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence            5899999999988889999999999999999999999999999999999999999999999998752  23567999999


Q ss_pred             CCCCCCCCCHHHHHhhcc
Q psy16345         99 QDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.+++.+|++||+.++.
T Consensus        82 ~~~~~~~~tv~e~l~~~~   99 (239)
T cd03296          82 HYALFRHMTVFDNVAFGL   99 (239)
T ss_pred             CCcccCCCCHHHHHhhhh
Confidence            999998899999998753

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.5e-28  Score=176.60  Aligned_cols=97  Identities=26%  Similarity=0.494  Sum_probs=89.2

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC-----ccEEEECCEeCCh------h
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD-----SGVIRLNKERLNK------R   88 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~-----~G~i~~~g~~~~~------~   88 (121)
                      ..++++||++.|+++.+|++||++|++++++|||||||||||||||++.++....     +|+|.++|+++..      .
T Consensus         6 ~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~   85 (253)
T COG1117           6 PAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE   85 (253)
T ss_pred             ceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence            4589999999999999999999999999999999999999999999999987654     4999999999852      6


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhccc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      +|+++|+|||.|+-|| +|++||++++.+
T Consensus        86 lRr~vGMVFQkPnPFp-~SIydNVayG~r  113 (253)
T COG1117          86 LRRRVGMVFQKPNPFP-MSIYDNVAYGLR  113 (253)
T ss_pred             HHHHheeeccCCCCCC-chHHHHHHHhHH
Confidence            8999999999999998 799999999874

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.95  E-value=5.4e-28  Score=173.36  Aligned_cols=94  Identities=24%  Similarity=0.457  Sum_probs=86.9

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDI  101 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~  101 (121)
                      ++++|+++.|+++.+++++||++.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++....++.++|++|++.
T Consensus         1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~   80 (210)
T cd03269           1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG   80 (210)
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc
Confidence            46899999998888999999999999999999999999999999999999999999999998876555678999999999


Q ss_pred             CCCCCCHHHHHhhc
Q psy16345        102 FFPELTLRQTLEVS  115 (121)
Q Consensus       102 l~~~ltv~e~l~~~  115 (121)
                      +++.+|++||+.+.
T Consensus        81 ~~~~~tv~e~l~~~   94 (210)
T cd03269          81 LYPKMKVIDQLVYL   94 (210)
T ss_pred             CCcCCcHHHHHHHH
Confidence            99889999999764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=5.3e-28  Score=178.15  Aligned_cols=97  Identities=32%  Similarity=0.514  Sum_probs=85.1

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChh-hcccEEEEee
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR-WKRKICYVLQ   98 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~-~~~~i~~v~Q   98 (121)
                      ..|+++|+++.|+++++|+||||++++|++++|+||||||||||+|+|+|+++|.+|+|.++|++..+. .+.+||||||
T Consensus         3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ   82 (254)
T COG1121           3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ   82 (254)
T ss_pred             cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence            469999999999866899999999999999999999999999999999999999999999999887643 3568999999


Q ss_pred             CCCC--CCCCCHHHHHhhcc
Q psy16345         99 QDIF--FPELTLRQTLEVSI  116 (121)
Q Consensus        99 ~~~l--~~~ltv~e~l~~~~  116 (121)
                      ...+  -..+||+|-+.++.
T Consensus        83 ~~~~d~~fP~tV~d~V~~g~  102 (254)
T COG1121          83 KSSVDRSFPITVKDVVLLGR  102 (254)
T ss_pred             ccccCCCCCcCHHHHHHccC
Confidence            6532  23469999999875

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.1e-27  Score=185.46  Aligned_cols=96  Identities=27%  Similarity=0.537  Sum_probs=89.0

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEee
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQ   98 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q   98 (121)
                      .|+++|++++|+++.+|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.++|+++..  ..++.++||+|
T Consensus         3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q   82 (369)
T PRK11000          3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ   82 (369)
T ss_pred             EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence            5899999999998889999999999999999999999999999999999999999999999998752  33567999999


Q ss_pred             CCCCCCCCCHHHHHhhcc
Q psy16345         99 QDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.+|+++|++||+.++.
T Consensus        83 ~~~l~~~~tv~eni~~~~  100 (369)
T PRK11000         83 SYALYPHLSVAENMSFGL  100 (369)
T ss_pred             CcccCCCCCHHHHHHhHH
Confidence            999999999999999864

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.95  E-value=6.6e-28  Score=173.56  Aligned_cols=95  Identities=26%  Similarity=0.438  Sum_probs=85.9

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhcc
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKR   91 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~   91 (121)
                      +++++|+++.|++  +++|+++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|.++..       .+++
T Consensus         1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (216)
T TIGR00960         1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR   80 (216)
T ss_pred             CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence            3789999999964  469999999999999999999999999999999999999999999999998742       2456


Q ss_pred             cEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         92 KICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        92 ~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      .++|++|++.+++.+|++||+.++
T Consensus        81 ~i~~~~q~~~~~~~~tv~e~l~~~  104 (216)
T TIGR00960        81 HIGMVFQDHRLLSDRTVYDNVAFP  104 (216)
T ss_pred             hceEEecCccccccccHHHHHHHH
Confidence            899999999999889999999875

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.95  E-value=1.1e-27  Score=180.76  Aligned_cols=95  Identities=29%  Similarity=0.445  Sum_probs=87.9

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYV   96 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v   96 (121)
                      ++|+++|++++|+++.+|+++||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.++..   ..++.++|+
T Consensus         3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v   82 (303)
T TIGR01288         3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVV   82 (303)
T ss_pred             cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEE
Confidence            46999999999998889999999999999999999999999999999999999999999999998742   356789999


Q ss_pred             eeCCCCCCCCCHHHHHhh
Q psy16345         97 LQQDIFFPELTLRQTLEV  114 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~  114 (121)
                      +|++.+++.+|++||+.+
T Consensus        83 ~q~~~~~~~~tv~e~l~~  100 (303)
T TIGR01288        83 PQFDNLDPEFTVRENLLV  100 (303)
T ss_pred             eccccCCcCCcHHHHHHH
Confidence            999999989999999975

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.95  E-value=1.1e-27  Score=185.10  Aligned_cols=96  Identities=34%  Similarity=0.589  Sum_probs=89.4

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc--cEEEECCEeCCh--hhcccEEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS--GVIRLNKERLNK--RWKRKICYV   96 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~--G~i~~~g~~~~~--~~~~~i~~v   96 (121)
                      .+++++++++|+++.+|+++||+|++|++++|+||||||||||||+|+|+++|++  |+|.++|+++..  ..++.++||
T Consensus         5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~v   84 (362)
T TIGR03258         5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALL   84 (362)
T ss_pred             EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEE
Confidence            4889999999998889999999999999999999999999999999999999999  999999998753  345689999


Q ss_pred             eeCCCCCCCCCHHHHHhhcc
Q psy16345         97 LQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ||++.+|+++||+||+.|+.
T Consensus        85 fQ~~~l~p~~tv~enl~~~l  104 (362)
T TIGR03258        85 FQNYALFPHLKVEDNVAFGL  104 (362)
T ss_pred             ECCcccCCCCcHHHHHHHHH
Confidence            99999999999999999875

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.95  E-value=7.4e-28  Score=172.99  Aligned_cols=95  Identities=41%  Similarity=0.648  Sum_probs=86.4

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ   99 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~   99 (121)
                      ++++|+++.|+++++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..  ..++.++|++|+
T Consensus         1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~   80 (213)
T cd03259           1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD   80 (213)
T ss_pred             CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence            468999999988889999999999999999999999999999999999999999999999998752  345679999999


Q ss_pred             CCCCCCCCHHHHHhhcc
Q psy16345        100 DIFFPELTLRQTLEVSI  116 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~~  116 (121)
                      +.+++.+|++||+.+..
T Consensus        81 ~~~~~~~tv~~~l~~~~   97 (213)
T cd03259          81 YALFPHLTVAENIAFGL   97 (213)
T ss_pred             hhhccCCcHHHHHHhHH
Confidence            99988899999998753

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.95  E-value=8.5e-28  Score=173.07  Aligned_cols=95  Identities=36%  Similarity=0.555  Sum_probs=85.5

Q ss_pred             EEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hh
Q psy16345         22 LVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RW   89 (121)
Q Consensus        22 i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~   89 (121)
                      |+++|+++.|++    +++|+++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|.++..        .+
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   80 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR   80 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence            468999999976    689999999999999999999999999999999999999999999999988742        13


Q ss_pred             cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         90 KRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.++|++|++.+++.+|++||+.++.
T Consensus        81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~  107 (218)
T cd03255          81 RRHIGFVFQSFNLLPDLTALENVELPL  107 (218)
T ss_pred             hhcEEEEeeccccCCCCcHHHHHHHHH
Confidence            467999999999998899999998753

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.95  E-value=1.2e-27  Score=172.20  Aligned_cols=94  Identities=31%  Similarity=0.476  Sum_probs=86.5

Q ss_pred             EEEeeeEEEcCCc----ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEE
Q psy16345         22 LVFSGLSVTLDKR----PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKIC   94 (121)
Q Consensus        22 i~~~~l~~~~~~~----~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~   94 (121)
                      ++++|+++.|+++    ++++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|+++..   .+++.++
T Consensus         2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~   81 (218)
T cd03266           2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG   81 (218)
T ss_pred             eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence            7899999999876    79999999999999999999999999999999999999999999999998752   4567899


Q ss_pred             EEeeCCCCCCCCCHHHHHhhc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      |++|++.+++.+|++||+.+.
T Consensus        82 ~~~q~~~~~~~~tv~e~l~~~  102 (218)
T cd03266          82 FVSDSTGLYDRLTARENLEYF  102 (218)
T ss_pred             EecCCcccCcCCCHHHHHHHH
Confidence            999999999989999999764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.95  E-value=1.9e-27  Score=179.51  Aligned_cols=95  Identities=23%  Similarity=0.447  Sum_probs=88.2

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEEe
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYVL   97 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v~   97 (121)
                      .+++++++++|+++.+|+++||++++|+++||+||||||||||+|+|+|+++|++|+|.++|.++..   ..++.++|++
T Consensus         2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~   81 (301)
T TIGR03522         2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP   81 (301)
T ss_pred             EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence            4889999999998999999999999999999999999999999999999999999999999998753   4567899999


Q ss_pred             eCCCCCCCCCHHHHHhhc
Q psy16345         98 QQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        98 Q~~~l~~~ltv~e~l~~~  115 (121)
                      |++.+++.+|+.||+.+.
T Consensus        82 q~~~l~~~~tv~e~l~~~   99 (301)
T TIGR03522        82 EHNPLYLDMYVREYLQFI   99 (301)
T ss_pred             CCCCCCCCCcHHHHHHHH
Confidence            999999999999999763

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.95  E-value=1.3e-27  Score=172.56  Aligned_cols=94  Identities=27%  Similarity=0.343  Sum_probs=86.2

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---hhhcccEEEEee
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---KRWKRKICYVLQ   98 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~---~~~~~~i~~v~Q   98 (121)
                      |+++|+++.|+++++|+++||++.+|++++|+|+||||||||+|+|+|+++|++|+|.++|.++.   ..+++.++|++|
T Consensus         1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q   80 (220)
T cd03265           1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ   80 (220)
T ss_pred             CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence            46899999998889999999999999999999999999999999999999999999999998764   244567999999


Q ss_pred             CCCCCCCCCHHHHHhhc
Q psy16345         99 QDIFFPELTLRQTLEVS  115 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~  115 (121)
                      ++.+++.+|+++|+.+.
T Consensus        81 ~~~~~~~~tv~~~l~~~   97 (220)
T cd03265          81 DLSVDDELTGWENLYIH   97 (220)
T ss_pred             CccccccCcHHHHHHHH
Confidence            99999989999999874

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.95  E-value=1.4e-27  Score=172.19  Aligned_cols=95  Identities=35%  Similarity=0.502  Sum_probs=86.4

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h-hcccEEEE
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R-WKRKICYV   96 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~-~~~~i~~v   96 (121)
                      |+++|++++|+++++++++||++++|+++||+||||||||||+++|+|+++|++|+|.++|.++..    . .++.++|+
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~   80 (222)
T cd03224           1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV   80 (222)
T ss_pred             CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence            468999999988889999999999999999999999999999999999999999999999988742    2 35679999


Q ss_pred             eeCCCCCCCCCHHHHHhhcc
Q psy16345         97 LQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +|++.+++.+|++||+.+..
T Consensus        81 ~q~~~~~~~~t~~~~l~~~~  100 (222)
T cd03224          81 PEGRRIFPELTVEENLLLGA  100 (222)
T ss_pred             ccccccCCCCcHHHHHHHHh
Confidence            99999999999999998754

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.95  E-value=7.9e-28  Score=192.60  Aligned_cols=98  Identities=33%  Similarity=0.503  Sum_probs=90.3

Q ss_pred             EEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---hhhcccEEEE
Q psy16345         21 ELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---KRWKRKICYV   96 (121)
Q Consensus        21 ~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~---~~~~~~i~~v   96 (121)
                      .++++||+|+|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.   +.++++++||
T Consensus       334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V  413 (529)
T TIGR02868       334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVF  413 (529)
T ss_pred             eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEE
Confidence            5999999999965 56999999999999999999999999999999999999999999999999876   3577899999


Q ss_pred             eeCCCCCCCCCHHHHHhhcccCc
Q psy16345         97 LQQDIFFPELTLRQTLEVSIADE  119 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~~~~~  119 (121)
                      +|++.+|+. |++||+.++.+++
T Consensus       414 ~Q~~~lF~~-TI~eNI~~g~~~~  435 (529)
T TIGR02868       414 AQDAHLFDT-TVRDNLRLGRPDA  435 (529)
T ss_pred             ccCcccccc-cHHHHHhccCCCC
Confidence            999999987 9999999987543

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.95  E-value=1.6e-27  Score=182.95  Aligned_cols=96  Identities=23%  Similarity=0.398  Sum_probs=87.2

Q ss_pred             EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hh
Q psy16345         21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RW   89 (121)
Q Consensus        21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~   89 (121)
                      +|+++|++++|++    .++|+++||+|++|+++||+|+||||||||+|+|+|+++|++|+|.++|.++..       .+
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~   80 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA   80 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence            3889999999952    479999999999999999999999999999999999999999999999998752       24


Q ss_pred             cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         90 KRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +++++|+||++.+++.+|++||+.++.
T Consensus        81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~  107 (343)
T TIGR02314        81 RRQIGMIFQHFNLLSSRTVFGNVALPL  107 (343)
T ss_pred             hcCEEEEECCccccccCcHHHHHHHHH
Confidence            678999999999999999999999864

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.95  E-value=1.5e-27  Score=171.99  Aligned_cols=94  Identities=33%  Similarity=0.513  Sum_probs=86.0

Q ss_pred             EEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEE
Q psy16345         22 LVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYV   96 (121)
Q Consensus        22 i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v   96 (121)
                      |+++|+++.|++  +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..   .++++++|+
T Consensus         1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v   80 (220)
T cd03263           1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC   80 (220)
T ss_pred             CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence            468999999976  789999999999999999999999999999999999999999999999998752   456779999


Q ss_pred             eeCCCCCCCCCHHHHHhhc
Q psy16345         97 LQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +|++.+++.+|+++|+.+.
T Consensus        81 ~q~~~~~~~~tv~~~l~~~   99 (220)
T cd03263          81 PQFDALFDELTVREHLRFY   99 (220)
T ss_pred             cCcCCccccCCHHHHHHHH
Confidence            9999999889999999874

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.95  E-value=1.4e-27  Score=171.45  Aligned_cols=95  Identities=33%  Similarity=0.508  Sum_probs=86.4

Q ss_pred             EEEEeeeEEEc-CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhccc
Q psy16345         21 ELVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKRK   92 (121)
Q Consensus        21 ~i~~~~l~~~~-~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~~   92 (121)
                      +++++|+++.| +++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..       .+++.
T Consensus         1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (214)
T TIGR02673         1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR   80 (214)
T ss_pred             CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence            37899999999 46789999999999999999999999999999999999999999999999998742       24568


Q ss_pred             EEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         93 ICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        93 i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ++|++|++.+++.+|++||+.+.
T Consensus        81 i~~~~q~~~~~~~~tv~~~l~~~  103 (214)
T TIGR02673        81 IGVVFQDFRLLPDRTVYENVALP  103 (214)
T ss_pred             eEEEecChhhccCCcHHHHHHHH
Confidence            99999999999889999999875

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.95  E-value=1.8e-27  Score=169.88  Aligned_cols=95  Identities=31%  Similarity=0.533  Sum_probs=87.5

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEEee
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYVLQ   98 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v~Q   98 (121)
                      ++++|++++|+++++|+++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.+   ..+++++|++|
T Consensus         2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q   81 (200)
T PRK13540          2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGH   81 (200)
T ss_pred             EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEecc
Confidence            789999999988889999999999999999999999999999999999999999999999987752   45678999999


Q ss_pred             CCCCCCCCCHHHHHhhcc
Q psy16345         99 QDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.+++.+|+++|+.+..
T Consensus        82 ~~~~~~~~tv~~~~~~~~   99 (200)
T PRK13540         82 RSGINPYLTLRENCLYDI   99 (200)
T ss_pred             ccccCcCCCHHHHHHHHH
Confidence            998888899999998753

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.95  E-value=2.3e-27  Score=171.27  Aligned_cols=94  Identities=35%  Similarity=0.528  Sum_probs=85.7

Q ss_pred             EEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEe
Q psy16345         22 LVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVL   97 (121)
Q Consensus        22 i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~   97 (121)
                      ++++|+++.|++    +++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. .++.++|++
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~i~~v~   79 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-PGPDRGYVF   79 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-ccCcEEEEe
Confidence            468999999987    789999999999999999999999999999999999999999999999988753 456799999


Q ss_pred             eCCCCCCCCCHHHHHhhcc
Q psy16345         98 QQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        98 Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |++.+++.+|++||+.+..
T Consensus        80 q~~~~~~~~tv~e~l~~~~   98 (220)
T cd03293          80 QQDALLPWLTVLDNVALGL   98 (220)
T ss_pred             cccccccCCCHHHHHHHHH
Confidence            9999988899999998753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.95  E-value=3e-27  Score=184.62  Aligned_cols=96  Identities=28%  Similarity=0.469  Sum_probs=89.6

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICYV   96 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~v   96 (121)
                      +|+++|++++|+++++|+++||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.    +.++++++||
T Consensus         3 ~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v   82 (402)
T PRK09536          3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV   82 (402)
T ss_pred             eEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEE
Confidence            589999999999999999999999999999999999999999999999999999999999999875    2457789999


Q ss_pred             eeCCCCCCCCCHHHHHhhcc
Q psy16345         97 LQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +|++.+++.+|++||+.++.
T Consensus        83 ~q~~~l~~~~tv~e~v~~~~  102 (402)
T PRK09536         83 PQDTSLSFEFDVRQVVEMGR  102 (402)
T ss_pred             ccCCCCCCCCCHHHHHHhcc
Confidence            99999988999999998764

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.95  E-value=1.8e-27  Score=170.38  Aligned_cols=95  Identities=35%  Similarity=0.550  Sum_probs=86.5

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ   99 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~   99 (121)
                      ++++|++++|+++++|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..  .+++.++|++|+
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~   80 (208)
T cd03268           1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA   80 (208)
T ss_pred             CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence            468999999988899999999999999999999999999999999999999999999999987642  345679999999


Q ss_pred             CCCCCCCCHHHHHhhcc
Q psy16345        100 DIFFPELTLRQTLEVSI  116 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~~  116 (121)
                      +.+++.+|++||+.+..
T Consensus        81 ~~~~~~~tv~e~l~~~~   97 (208)
T cd03268          81 PGFYPNLTARENLRLLA   97 (208)
T ss_pred             CccCccCcHHHHHHHHH
Confidence            99998899999997753

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.95  E-value=1.9e-27  Score=172.90  Aligned_cols=94  Identities=27%  Similarity=0.468  Sum_probs=86.2

Q ss_pred             EEEeeeEEEcCCc----ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhc
Q psy16345         22 LVFSGLSVTLDKR----PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWK   90 (121)
Q Consensus        22 i~~~~l~~~~~~~----~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~   90 (121)
                      |+++|++++|+++    ++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..       ..+
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR   81 (233)
T ss_pred             eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence            7899999999876    89999999999999999999999999999999999999999999999998742       235


Q ss_pred             ccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         91 RKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        91 ~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +.++|++|++.+++.+|++||+.+.
T Consensus        82 ~~i~~~~q~~~~~~~~t~~e~l~~~  106 (233)
T cd03258          82 RRIGMIFQHFNLLSSRTVFENVALP  106 (233)
T ss_pred             hheEEEccCcccCCCCcHHHHHHHH
Confidence            6799999999999889999999875

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.95  E-value=2.3e-27  Score=170.27  Aligned_cols=94  Identities=27%  Similarity=0.488  Sum_probs=85.8

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ   99 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~   99 (121)
                      |+++|+++.|+++++++++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++..  ..++.++|++|+
T Consensus         1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~   80 (213)
T cd03301           1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN   80 (213)
T ss_pred             CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence            468999999988899999999999999999999999999999999999999999999999998752  234579999999


Q ss_pred             CCCCCCCCHHHHHhhc
Q psy16345        100 DIFFPELTLRQTLEVS  115 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~  115 (121)
                      +.+++.+|++||+.++
T Consensus        81 ~~~~~~~tv~~~l~~~   96 (213)
T cd03301          81 YALYPHMTVYDNIAFG   96 (213)
T ss_pred             hhhccCCCHHHHHHHH
Confidence            9988889999999875

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=2.8e-27  Score=181.50  Aligned_cols=96  Identities=23%  Similarity=0.399  Sum_probs=87.1

Q ss_pred             EEEEeeeEEEcC----CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hh
Q psy16345         21 ELVFSGLSVTLD----KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RW   89 (121)
Q Consensus        21 ~i~~~~l~~~~~----~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~   89 (121)
                      +|+++|++++|+    ++++|+++||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.++..       .+
T Consensus         1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~   80 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA   80 (343)
T ss_pred             CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence            378999999997    3679999999999999999999999999999999999999999999999998752       23


Q ss_pred             cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         90 KRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.++|++|++.+++.+|++||+.++.
T Consensus        81 ~~~ig~v~q~~~l~~~~tv~eni~~~~  107 (343)
T PRK11153         81 RRQIGMIFQHFNLLSSRTVFDNVALPL  107 (343)
T ss_pred             hcCEEEEeCCCccCCCCcHHHHHHHHH
Confidence            678999999999999899999998753

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.95  E-value=3e-27  Score=172.65  Aligned_cols=95  Identities=26%  Similarity=0.489  Sum_probs=87.1

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh------hhcccEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK------RWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~------~~~~~i~   94 (121)
                      +++++|+++.|+++++++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..      .+++.++
T Consensus         1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   80 (240)
T PRK09493          1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG   80 (240)
T ss_pred             CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence            3789999999988889999999999999999999999999999999999999999999999998742      3466799


Q ss_pred             EEeeCCCCCCCCCHHHHHhhc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      |++|++.+++.+|+++|+.++
T Consensus        81 ~~~q~~~~~~~~tv~~~l~~~  101 (240)
T PRK09493         81 MVFQQFYLFPHLTALENVMFG  101 (240)
T ss_pred             EEecccccCCCCcHHHHHHhH
Confidence            999999999889999999875

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.95  E-value=3e-28  Score=177.46  Aligned_cols=97  Identities=32%  Similarity=0.470  Sum_probs=90.4

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKIC   94 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~   94 (121)
                      ..+++++++++||+-.+++||||++++||++|||||||||||||+++|+|+++|++|+|.++|+++..     ..+..++
T Consensus         3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~   82 (250)
T COG0411           3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA   82 (250)
T ss_pred             ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence            35889999999999999999999999999999999999999999999999999999999999999862     3467799


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      --||.+.+|++|||.||++.+.
T Consensus        83 RTFQ~~rlF~~lTVlENv~va~  104 (250)
T COG0411          83 RTFQITRLFPGLTVLENVAVGA  104 (250)
T ss_pred             eecccccccCCCcHHHHHHHHh
Confidence            9999999999999999999874

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.95  E-value=2.1e-27  Score=172.80  Aligned_cols=95  Identities=34%  Similarity=0.516  Sum_probs=86.1

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h-hcccEEEE
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R-WKRKICYV   96 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~-~~~~i~~v   96 (121)
                      ++++|+++.|+++++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..    . .+..++|+
T Consensus         1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v   80 (236)
T cd03219           1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT   80 (236)
T ss_pred             CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence            468999999988889999999999999999999999999999999999999999999999998752    2 24579999


Q ss_pred             eeCCCCCCCCCHHHHHhhcc
Q psy16345         97 LQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +|++.+++.+|++||+.+..
T Consensus        81 ~q~~~l~~~~tv~~~l~~~~  100 (236)
T cd03219          81 FQIPRLFPELTVLENVMVAA  100 (236)
T ss_pred             ecccccccCCCHHHHHHHHH
Confidence            99999999999999998754

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.95  E-value=4.3e-27  Score=174.88  Aligned_cols=96  Identities=28%  Similarity=0.498  Sum_probs=87.6

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhccc
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKRK   92 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~~   92 (121)
                      .+|+++|+++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..       .+++.
T Consensus         6 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~   85 (269)
T PRK11831          6 NLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR   85 (269)
T ss_pred             ceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence            35999999999988899999999999999999999999999999999999999999999999988742       23567


Q ss_pred             EEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         93 ICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        93 i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ++|++|++.+++.+|++||+.+.
T Consensus        86 i~~v~q~~~~~~~~tv~enl~~~  108 (269)
T PRK11831         86 MSMLFQSGALFTDMNVFDNVAYP  108 (269)
T ss_pred             EEEEecccccCCCCCHHHHHHHH
Confidence            99999999999989999999864

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.95  E-value=1.7e-27  Score=173.98  Aligned_cols=95  Identities=32%  Similarity=0.527  Sum_probs=86.5

Q ss_pred             EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhccc
Q psy16345         21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKRK   92 (121)
Q Consensus        21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~~   92 (121)
                      +++++|+++.|+ ++++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..       .+++.
T Consensus         1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (243)
T TIGR02315         1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR   80 (243)
T ss_pred             CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence            378999999998 7789999999999999999999999999999999999999999999999988642       24667


Q ss_pred             EEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         93 ICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        93 i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ++|++|++.+++.+|++||+.++
T Consensus        81 i~~v~q~~~~~~~~tv~~~l~~~  103 (243)
T TIGR02315        81 IGMIFQHYNLIERLTVLENVLHG  103 (243)
T ss_pred             eEEEcCCCcccccccHHHHHhhc
Confidence            99999999999889999999764

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.95  E-value=2.4e-27  Score=170.02  Aligned_cols=94  Identities=32%  Similarity=0.552  Sum_probs=86.1

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC------hhhcccEEE
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN------KRWKRKICY   95 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~------~~~~~~i~~   95 (121)
                      ++++|+++.|+++++++++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|+++.      ..+++.++|
T Consensus         1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~   80 (213)
T cd03262           1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM   80 (213)
T ss_pred             CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence            46899999998888999999999999999999999999999999999999999999999998873      134678999


Q ss_pred             EeeCCCCCCCCCHHHHHhhc
Q psy16345         96 VLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ++|++.+++.+|++||+.+.
T Consensus        81 ~~q~~~~~~~~t~~e~l~~~  100 (213)
T cd03262          81 VFQQFNLFPHLTVLENITLA  100 (213)
T ss_pred             EecccccCCCCcHHHHHHhH
Confidence            99999999889999999764

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=4.1e-27  Score=173.98  Aligned_cols=94  Identities=34%  Similarity=0.522  Sum_probs=86.1

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD  100 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~  100 (121)
                      +++++|+++.|+++.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++|++|++
T Consensus         1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~v~q~~   79 (255)
T PRK11248          1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG-PGAERGVVFQNE   79 (255)
T ss_pred             CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC-CCCcEEEEeCCC
Confidence            3789999999988889999999999999999999999999999999999999999999999998753 234689999999


Q ss_pred             CCCCCCCHHHHHhhc
Q psy16345        101 IFFPELTLRQTLEVS  115 (121)
Q Consensus       101 ~l~~~ltv~e~l~~~  115 (121)
                      .+++.+|++||+.+.
T Consensus        80 ~~~~~~tv~e~l~~~   94 (255)
T PRK11248         80 GLLPWRNVQDNVAFG   94 (255)
T ss_pred             ccCCCCcHHHHHHhH
Confidence            999889999999875

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=6.4e-27  Score=170.37  Aligned_cols=95  Identities=27%  Similarity=0.457  Sum_probs=85.6

Q ss_pred             EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h---h
Q psy16345         21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R---W   89 (121)
Q Consensus        21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~---~   89 (121)
                      +++++|+++.|++    +++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++..    .   +
T Consensus         5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~   84 (233)
T PRK11629          5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL   84 (233)
T ss_pred             eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence            5899999999964    479999999999999999999999999999999999999999999999998742    1   2


Q ss_pred             -cccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         90 -KRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        90 -~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                       ++.++|++|++.+++.+|++||+.+.
T Consensus        85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~  111 (233)
T PRK11629         85 RNQKLGFIYQFHHLLPDFTALENVAMP  111 (233)
T ss_pred             HhccEEEEecCcccCCCCCHHHHHHHH
Confidence             25799999999999989999999874

>PRK10908 cell division protein FtsE; Provisional

Probab=99.95  E-value=3.5e-27  Score=170.51  Aligned_cols=94  Identities=24%  Similarity=0.433  Sum_probs=85.9

Q ss_pred             EEEeeeEEEc-CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhcccE
Q psy16345         22 LVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKRKI   93 (121)
Q Consensus        22 i~~~~l~~~~-~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~~i   93 (121)
                      ++++|+++.| +++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..       .+++.+
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i   81 (222)
T PRK10908          2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI   81 (222)
T ss_pred             EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence            7899999999 66789999999999999999999999999999999999999999999999988742       246789


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +|++|++.+++.+|++||+.+.
T Consensus        82 ~~~~q~~~~~~~~tv~~~l~~~  103 (222)
T PRK10908         82 GMIFQDHHLLMDRTVYDNVAIP  103 (222)
T ss_pred             EEEecCccccccccHHHHHHhH
Confidence            9999999888889999999875

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.95  E-value=3e-27  Score=171.61  Aligned_cols=95  Identities=35%  Similarity=0.524  Sum_probs=86.0

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h-hcccEEEE
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R-WKRKICYV   96 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~-~~~~i~~v   96 (121)
                      ++++|+++.|+++.+|+++||++.+|++++|+|+||||||||+|+|+|+++|++|+|.++|.++..    . .++.++|+
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~   80 (232)
T cd03218           1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL   80 (232)
T ss_pred             CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence            468999999988889999999999999999999999999999999999999999999999988642    2 34579999


Q ss_pred             eeCCCCCCCCCHHHHHhhcc
Q psy16345         97 LQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +|++.+++.+|++||+.+..
T Consensus        81 ~q~~~~~~~~tv~~~l~~~~  100 (232)
T cd03218          81 PQEASIFRKLTVEENILAVL  100 (232)
T ss_pred             cCCccccccCcHHHHHHHHH
Confidence            99999999899999998753

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.95  E-value=5.8e-27  Score=173.60  Aligned_cols=95  Identities=24%  Similarity=0.424  Sum_probs=87.4

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD  100 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~  100 (121)
                      .|+++|+++.|+++++|+++||+|.+|++++|+||||||||||+|+|+|+++|++|+|.++|.++. .+++.++|++|++
T Consensus        12 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-~~~~~i~~v~q~~   90 (257)
T PRK11247         12 PLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-EAREDTRLMFQDA   90 (257)
T ss_pred             cEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-HhhCceEEEecCc
Confidence            489999999998889999999999999999999999999999999999999999999999988763 3466799999999


Q ss_pred             CCCCCCCHHHHHhhcc
Q psy16345        101 IFFPELTLRQTLEVSI  116 (121)
Q Consensus       101 ~l~~~ltv~e~l~~~~  116 (121)
                      .+++.+|++||+.++.
T Consensus        91 ~l~~~~tv~enl~~~~  106 (257)
T PRK11247         91 RLLPWKKVIDNVGLGL  106 (257)
T ss_pred             cCCCCCcHHHHHHhcc
Confidence            9998889999998753

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.95  E-value=2.1e-27  Score=172.06  Aligned_cols=94  Identities=29%  Similarity=0.472  Sum_probs=85.0

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC-----CCCccEEEECCEeCCh------hhc
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV-----KLDSGVIRLNKERLNK------RWK   90 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~-----~~~~G~i~~~g~~~~~------~~~   90 (121)
                      |+++|+++.|+++++|+++||+|.+|++++|+|+||||||||+|+|+|++     +|++|+|.++|+++..      .++
T Consensus         1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (227)
T cd03260           1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR   80 (227)
T ss_pred             CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence            46899999998889999999999999999999999999999999999999     9999999999998642      346


Q ss_pred             ccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         91 RKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        91 ~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +.++|++|++.++ .+|++||+.++.
T Consensus        81 ~~i~~~~q~~~~~-~~tv~e~l~~~~  105 (227)
T cd03260          81 RRVGMVFQKPNPF-PGSIYDNVAYGL  105 (227)
T ss_pred             hhEEEEecCchhc-cccHHHHHHhHH
Confidence            6899999999888 789999998753

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.95  E-value=3.7e-27  Score=171.10  Aligned_cols=95  Identities=41%  Similarity=0.582  Sum_probs=86.5

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEEE
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICYV   96 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~v   96 (121)
                      |+++|+++.|+++++|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..     .+++.++|+
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~   80 (230)
T TIGR03410         1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV   80 (230)
T ss_pred             CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence            468999999988899999999999999999999999999999999999999999999999988742     235679999


Q ss_pred             eeCCCCCCCCCHHHHHhhcc
Q psy16345         97 LQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +|++.+++.+|+.+|+.++.
T Consensus        81 ~q~~~~~~~~tv~~~l~~~~  100 (230)
T TIGR03410        81 PQGREIFPRLTVEENLLTGL  100 (230)
T ss_pred             ccCCcccCCCcHHHHHHHHH
Confidence            99999999899999998754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.95  E-value=4.4e-27  Score=172.56  Aligned_cols=95  Identities=28%  Similarity=0.537  Sum_probs=86.8

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh------------h
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK------------R   88 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~------------~   88 (121)
                      +++++|+++.|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..            .
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   82 (250)
T PRK11264          3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ   82 (250)
T ss_pred             cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence            5899999999988889999999999999999999999999999999999999999999999987641            2


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +++.++|++|++.+++.+|++||+.++
T Consensus        83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~  109 (250)
T PRK11264         83 LRQHVGFVFQNFNLFPHRTVLENIIEG  109 (250)
T ss_pred             hhhhEEEEecCcccCCCCCHHHHHHHH
Confidence            456799999999999889999999764

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.95  E-value=3e-27  Score=172.36  Aligned_cols=94  Identities=36%  Similarity=0.593  Sum_probs=85.5

Q ss_pred             EEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhcccE
Q psy16345         22 LVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKRKI   93 (121)
Q Consensus        22 i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~~i   93 (121)
                      ++++|+++.|++ +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++..       .+++.+
T Consensus         1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i   80 (241)
T cd03256           1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI   80 (241)
T ss_pred             CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence            468999999987 789999999999999999999999999999999999999999999999988742       245679


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +|++|++.+++.+|++||+.+.
T Consensus        81 ~~~~q~~~~~~~~tv~~~l~~~  102 (241)
T cd03256          81 GMIFQQFNLIERLSVLENVLSG  102 (241)
T ss_pred             EEEcccCcccccCcHHHHHHhh
Confidence            9999999999889999999864

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.95  E-value=1.7e-27  Score=186.77  Aligned_cols=98  Identities=30%  Similarity=0.427  Sum_probs=92.2

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-----hhhcccEE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-----KRWKRKIC   94 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-----~~~~~~i~   94 (121)
                      ..++++++++.|++-.+.++|||++++||+.||+|+||||||||+++|.|+++|++|+|+++|+++.     +..+..||
T Consensus         3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG   82 (501)
T COG3845           3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG   82 (501)
T ss_pred             ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence            3589999999999999999999999999999999999999999999999999999999999999985     35677899


Q ss_pred             EEeeCCCCCCCCCHHHHHhhccc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      +|+|++.|++.+||.||+.++..
T Consensus        83 MVhQHF~Lv~~lTV~ENiiLg~e  105 (501)
T COG3845          83 MVHQHFMLVPTLTVAENIILGLE  105 (501)
T ss_pred             EEeeccccccccchhhhhhhcCc
Confidence            99999999999999999999875

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=6.5e-27  Score=171.04  Aligned_cols=94  Identities=28%  Similarity=0.458  Sum_probs=86.2

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----------hhhc
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----------KRWK   90 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----------~~~~   90 (121)
                      +++++|+++.|+++.+|+++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.          ..++
T Consensus         2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   81 (242)
T PRK11124          2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR   81 (242)
T ss_pred             EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence            589999999998889999999999999999999999999999999999999999999999998762          1345


Q ss_pred             ccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345         91 RKICYVLQQDIFFPELTLRQTLEV  114 (121)
Q Consensus        91 ~~i~~v~Q~~~l~~~ltv~e~l~~  114 (121)
                      ++++|++|++.+++.+|++||+.+
T Consensus        82 ~~i~~~~q~~~~~~~~tv~e~i~~  105 (242)
T PRK11124         82 RNVGMVFQQYNLWPHLTVQQNLIE  105 (242)
T ss_pred             hheEEEecCccccCCCcHHHHHHH
Confidence            689999999999998999999964

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.95  E-value=5.7e-27  Score=167.75  Aligned_cols=96  Identities=29%  Similarity=0.429  Sum_probs=87.9

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---hhhcccEEEEe
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---KRWKRKICYVL   97 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~---~~~~~~i~~v~   97 (121)
                      +++++++++.|+++++++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.   ...+++++|++
T Consensus         1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~   80 (204)
T PRK13538          1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG   80 (204)
T ss_pred             CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence            378999999998888999999999999999999999999999999999999999999999998874   23567899999


Q ss_pred             eCCCCCCCCCHHHHHhhcc
Q psy16345         98 QQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        98 Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |++.+++.+|++||+.+..
T Consensus        81 ~~~~~~~~~tv~e~l~~~~   99 (204)
T PRK13538         81 HQPGIKTELTALENLRFYQ   99 (204)
T ss_pred             CccccCcCCcHHHHHHHHH
Confidence            9999999899999998754

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.95  E-value=5e-27  Score=171.79  Aligned_cols=94  Identities=28%  Similarity=0.524  Sum_probs=85.9

Q ss_pred             EEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEE
Q psy16345         22 LVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYV   96 (121)
Q Consensus        22 i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v   96 (121)
                      +++++++++|++ +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..    .+++.++|+
T Consensus         1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (242)
T cd03295           1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV   80 (242)
T ss_pred             CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence            468999999987 789999999999999999999999999999999999999999999999988742    346689999


Q ss_pred             eeCCCCCCCCCHHHHHhhc
Q psy16345         97 LQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +|++.+++.+|++||+.+.
T Consensus        81 ~q~~~~~~~~tv~e~l~~~   99 (242)
T cd03295          81 IQQIGLFPHMTVEENIALV   99 (242)
T ss_pred             ccCccccCCCcHHHHHHHH
Confidence            9999999889999999865

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.95  E-value=5.4e-27  Score=168.31  Aligned_cols=95  Identities=26%  Similarity=0.451  Sum_probs=85.6

Q ss_pred             EEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhcccE
Q psy16345         22 LVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKRKI   93 (121)
Q Consensus        22 i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~~i   93 (121)
                      ++++|+++.|++ +++|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..       .+++.+
T Consensus         1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i   80 (214)
T cd03292           1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI   80 (214)
T ss_pred             CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence            468999999964 689999999999999999999999999999999999999999999999988742       245679


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +|++|++.+++.+|++||+.+..
T Consensus        81 ~~v~q~~~~~~~~t~~~~l~~~~  103 (214)
T cd03292          81 GVVFQDFRLLPDRNVYENVAFAL  103 (214)
T ss_pred             EEEecCchhccCCcHHHHHHHHH
Confidence            99999999999899999998753

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=6.5e-27  Score=170.98  Aligned_cols=95  Identities=32%  Similarity=0.508  Sum_probs=87.5

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~   95 (121)
                      ++++++++++|+++++|+++||++++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++..     ..++.++|
T Consensus         3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   82 (241)
T PRK10895          3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY   82 (241)
T ss_pred             eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence            5899999999988899999999999999999999999999999999999999999999999998742     23567999


Q ss_pred             EeeCCCCCCCCCHHHHHhhc
Q psy16345         96 VLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ++|++.+++.+|++||+.+.
T Consensus        83 ~~q~~~~~~~~tv~enl~~~  102 (241)
T PRK10895         83 LPQEASIFRRLSVYDNLMAV  102 (241)
T ss_pred             eccCCcccccCcHHHHHhhh
Confidence            99999999889999999875

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=8e-27  Score=170.11  Aligned_cols=96  Identities=27%  Similarity=0.439  Sum_probs=88.0

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~   95 (121)
                      +++++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..     .+++.++|
T Consensus         5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   84 (237)
T PRK11614          5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAI   84 (237)
T ss_pred             EEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEE
Confidence            6999999999988889999999999999999999999999999999999999999999999998742     24567999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++|++.+++.+|+.+|+.++.
T Consensus        85 ~~q~~~~~~~~tv~~~l~~~~  105 (237)
T PRK11614         85 VPEGRRVFSRMTVEENLAMGG  105 (237)
T ss_pred             eccCcccCCCCcHHHHHHHhh
Confidence            999999998899999998753

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.95  E-value=5.5e-27  Score=169.56  Aligned_cols=94  Identities=33%  Similarity=0.462  Sum_probs=84.3

Q ss_pred             EEEeeeEEEcCCc----ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhc
Q psy16345         22 LVFSGLSVTLDKR----PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWK   90 (121)
Q Consensus        22 i~~~~l~~~~~~~----~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~   90 (121)
                      ++++|++++|+++    ++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..       .++
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (228)
T cd03257           2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR   81 (228)
T ss_pred             eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence            7899999999765    79999999999999999999999999999999999999999999999998742       345


Q ss_pred             ccEEEEeeCC--CCCCCCCHHHHHhhc
Q psy16345         91 RKICYVLQQD--IFFPELTLRQTLEVS  115 (121)
Q Consensus        91 ~~i~~v~Q~~--~l~~~ltv~e~l~~~  115 (121)
                      +.++|++|++  .+++.+|+++|+.+.
T Consensus        82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~  108 (228)
T cd03257          82 KEIQMVFQDPMSSLNPRMTIGEQIAEP  108 (228)
T ss_pred             ccEEEEecCchhhcCCcCCHHHHHHHH
Confidence            6899999998  466778999999764

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.95  E-value=8.1e-27  Score=170.44  Aligned_cols=96  Identities=33%  Similarity=0.551  Sum_probs=87.3

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~   95 (121)
                      +|+++|+++.|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..     ..++.++|
T Consensus         2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   81 (242)
T TIGR03411         2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR   81 (242)
T ss_pred             eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence            4889999999988889999999999999999999999999999999999999999999999988742     23457999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++|++.+++.+|++||+.+..
T Consensus        82 ~~q~~~~~~~~tv~~nl~~~~  102 (242)
T TIGR03411        82 KFQKPTVFENLTVFENLELAL  102 (242)
T ss_pred             eccccccCCCCCHHHHHHHhh
Confidence            999999999999999998753

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.94  E-value=7.4e-27  Score=170.32  Aligned_cols=95  Identities=34%  Similarity=0.497  Sum_probs=86.2

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEEe
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYVL   97 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v~   97 (121)
                      +++++|++++|+++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++..   ..++.++|++
T Consensus         1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~   80 (236)
T TIGR03864         1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF   80 (236)
T ss_pred             CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence            3789999999988899999999999999999999999999999999999999999999999988742   2345799999


Q ss_pred             eCCCCCCCCCHHHHHhhc
Q psy16345         98 QQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        98 Q~~~l~~~ltv~e~l~~~  115 (121)
                      |++.+++.+|+++|+.+.
T Consensus        81 q~~~~~~~~t~~~~l~~~   98 (236)
T TIGR03864        81 QQPTLDLDLSVRQNLRYH   98 (236)
T ss_pred             CCCCCcccCcHHHHHHHH
Confidence            999888889999999764

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.94  E-value=1.2e-26  Score=168.28  Aligned_cols=96  Identities=31%  Similarity=0.440  Sum_probs=85.5

Q ss_pred             cEEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h---
Q psy16345         20 LELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R---   88 (121)
Q Consensus        20 ~~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~---   88 (121)
                      .+++++|+++.|++    .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..    .   
T Consensus         5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   84 (228)
T PRK10584          5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK   84 (228)
T ss_pred             ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence            35899999999975    359999999999999999999999999999999999999999999999988742    1   


Q ss_pred             h-cccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         89 W-KRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        89 ~-~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      . ++.++|++|++.+++.+|++||+.+.
T Consensus        85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~  112 (228)
T PRK10584         85 LRAKHVGFVFQSFMLIPTLNALENVELP  112 (228)
T ss_pred             HHhheEEEEEcccccCCCcCHHHHHHHH
Confidence            1 35799999999999889999999764

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=7.5e-27  Score=172.10  Aligned_cols=95  Identities=28%  Similarity=0.521  Sum_probs=87.4

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYV   96 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v   96 (121)
                      +++++|++++|+++++|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..    .+++.++|+
T Consensus         2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   81 (255)
T PRK11231          2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL   81 (255)
T ss_pred             EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence            5899999999998899999999999999999999999999999999999999999999999988642    345679999


Q ss_pred             eeCCCCCCCCCHHHHHhhc
Q psy16345         97 LQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +|++.+++.+|++||+.++
T Consensus        82 ~q~~~~~~~~tv~~~i~~~  100 (255)
T PRK11231         82 PQHHLTPEGITVRELVAYG  100 (255)
T ss_pred             cccCCCCCCccHHHHHHhc
Confidence            9999888888999999875

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.94  E-value=1.1e-26  Score=162.59  Aligned_cols=92  Identities=35%  Similarity=0.600  Sum_probs=84.3

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEEee
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYVLQ   98 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v~Q   98 (121)
                      +++++++++|+++++|+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.++|+++..   .+++.++|++|
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q   80 (173)
T cd03230           1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE   80 (173)
T ss_pred             CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEec
Confidence            468999999988789999999999999999999999999999999999999999999999988752   45678999999


Q ss_pred             CCCCCCCCCHHHHHh
Q psy16345         99 QDIFFPELTLRQTLE  113 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~  113 (121)
                      ++.+++.+|+.||+.
T Consensus        81 ~~~~~~~~tv~~~~~   95 (173)
T cd03230          81 EPSLYENLTVRENLK   95 (173)
T ss_pred             CCccccCCcHHHHhh
Confidence            999998889999975

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=9.9e-27  Score=171.07  Aligned_cols=96  Identities=28%  Similarity=0.466  Sum_probs=87.0

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCC------hhh
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLN------KRW   89 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~------~~~   89 (121)
                      +|+++|+++.|+++++|+++||+|.+||+++|+|+||||||||+++|+|+++|     ++|+|.++|.++.      ..+
T Consensus         4 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   83 (253)
T PRK14267          4 AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEV   83 (253)
T ss_pred             eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHH
Confidence            58999999999888899999999999999999999999999999999999987     4999999999874      134


Q ss_pred             cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         90 KRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +++++|++|++.+++.+|+.||+.++.
T Consensus        84 ~~~i~~~~q~~~~~~~~tv~enl~~~~  110 (253)
T PRK14267         84 RREVGMVFQYPNPFPHLTIYDNVAIGV  110 (253)
T ss_pred             hhceeEEecCCccCCCCcHHHHHHHHH
Confidence            668999999999998899999998753

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.94  E-value=7.7e-27  Score=164.04  Aligned_cols=93  Identities=38%  Similarity=0.655  Sum_probs=84.7

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh------hhcccEEE
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK------RWKRKICY   95 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~------~~~~~i~~   95 (121)
                      ++++|+++.|+++++++++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|.++..      .+++.++|
T Consensus         1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~   80 (178)
T cd03229           1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM   80 (178)
T ss_pred             CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence            468999999988889999999999999999999999999999999999999999999999987642      34678999


Q ss_pred             EeeCCCCCCCCCHHHHHhh
Q psy16345         96 VLQQDIFFPELTLRQTLEV  114 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~  114 (121)
                      ++|++.+++.+|++||+.+
T Consensus        81 ~~q~~~~~~~~t~~~~l~~   99 (178)
T cd03229          81 VFQDFALFPHLTVLENIAL   99 (178)
T ss_pred             EecCCccCCCCCHHHheee
Confidence            9999998888899999864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.94  E-value=3.9e-27  Score=194.07  Aligned_cols=99  Identities=34%  Similarity=0.587  Sum_probs=92.4

Q ss_pred             EEEEeeeEEEcCCc--ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345         21 ELVFSGLSVTLDKR--PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~~--~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~   94 (121)
                      .|+++|++|+|+..  .+|+|+||+|++||++||+|+||||||||+|+|.|++.|++|+|.+||.++.    ..+|++++
T Consensus       471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig  550 (709)
T COG2274         471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVG  550 (709)
T ss_pred             eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhee
Confidence            59999999999764  6999999999999999999999999999999999999999999999999986    36899999


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcccCcC
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSIADED  120 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~~~~~  120 (121)
                      ||+|++.+|.. |++||+.++.++.+
T Consensus       551 ~V~Q~~~Lf~g-SI~eNi~l~~p~~~  575 (709)
T COG2274         551 YVLQDPFLFSG-SIRENIALGNPEAT  575 (709)
T ss_pred             EEcccchhhcC-cHHHHHhcCCCCCC
Confidence            99999999876 99999999988755

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.2e-26  Score=170.72  Aligned_cols=95  Identities=29%  Similarity=0.473  Sum_probs=87.2

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h-hcccEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R-WKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~-~~~~i~~   95 (121)
                      +++++|+++.|+++++|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..    . .+..++|
T Consensus         5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   84 (255)
T PRK11300          5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVR   84 (255)
T ss_pred             eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEE
Confidence            5999999999988899999999999999999999999999999999999999999999999998742    2 2446899


Q ss_pred             EeeCCCCCCCCCHHHHHhhc
Q psy16345         96 VLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ++|++.+++.+|++||+.++
T Consensus        85 ~~q~~~~~~~~tv~enl~~~  104 (255)
T PRK11300         85 TFQHVRLFREMTVIENLLVA  104 (255)
T ss_pred             eccCcccCCCCcHHHHHHHh
Confidence            99999999999999999875

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.94  E-value=1.5e-26  Score=166.81  Aligned_cols=96  Identities=27%  Similarity=0.399  Sum_probs=87.6

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-hhcccEEEEee
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-RWKRKICYVLQ   98 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-~~~~~i~~v~Q   98 (121)
                      .+++++|++++|+++++++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|+++.. ..++.++|++|
T Consensus        10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q   89 (214)
T PRK13543         10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGH   89 (214)
T ss_pred             ceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeec
Confidence            46999999999988889999999999999999999999999999999999999999999999988753 33456999999


Q ss_pred             CCCCCCCCCHHHHHhhc
Q psy16345         99 QDIFFPELTLRQTLEVS  115 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~  115 (121)
                      ++.+++.+|++||+.+.
T Consensus        90 ~~~~~~~~t~~e~l~~~  106 (214)
T PRK13543         90 LPGLKADLSTLENLHFL  106 (214)
T ss_pred             CcccccCCcHHHHHHHH
Confidence            99898888999998764

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.94  E-value=1e-26  Score=168.68  Aligned_cols=95  Identities=26%  Similarity=0.479  Sum_probs=86.3

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY   95 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~   95 (121)
                      .+|+++|+++.|+++++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..    .+++.++|
T Consensus         6 ~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   85 (225)
T PRK10247          6 PLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSY   85 (225)
T ss_pred             ceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEE
Confidence            36999999999988899999999999999999999999999999999999999999999999988642    34668999


Q ss_pred             EeeCCCCCCCCCHHHHHhhc
Q psy16345         96 VLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ++|++.+++. |++||+.+.
T Consensus        86 ~~q~~~l~~~-tv~enl~~~  104 (225)
T PRK10247         86 CAQTPTLFGD-TVYDNLIFP  104 (225)
T ss_pred             Eecccccccc-cHHHHHHhH
Confidence            9999988875 999999764

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.1e-26  Score=170.56  Aligned_cols=96  Identities=26%  Similarity=0.454  Sum_probs=86.9

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCCh----hhcc
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLNK----RWKR   91 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~~----~~~~   91 (121)
                      +++++|++++|+++.+++++||+|++|++++|+|+||||||||+++|+|+++|     ++|+|.++|.++..    .+++
T Consensus         3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   82 (250)
T PRK14247          3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR   82 (250)
T ss_pred             eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence            58999999999888899999999999999999999999999999999999874     69999999998742    4567


Q ss_pred             cEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         92 KICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        92 ~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      .++|++|++.+++.+|++||+.++.
T Consensus        83 ~i~~v~q~~~~~~~~tv~enl~~~~  107 (250)
T PRK14247         83 RVQMVFQIPNPIPNLSIFENVALGL  107 (250)
T ss_pred             cEEEEeccCccCCCCcHHHHHHHHH
Confidence            8999999998888899999998753

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.94  E-value=1.2e-26  Score=171.58  Aligned_cols=96  Identities=35%  Similarity=0.554  Sum_probs=87.4

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYV   96 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v   96 (121)
                      +++++|+++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..    .+++.++|+
T Consensus         2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~   81 (258)
T PRK13548          2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL   81 (258)
T ss_pred             eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence            4889999999988889999999999999999999999999999999999999999999999988642    345679999


Q ss_pred             eeCCCCCCCCCHHHHHhhcc
Q psy16345         97 LQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +|++.+++.+|++||+.+..
T Consensus        82 ~q~~~~~~~~tv~e~l~~~~  101 (258)
T PRK13548         82 PQHSSLSFPFTVEEVVAMGR  101 (258)
T ss_pred             ccCCcCCCCCCHHHHHHhhh
Confidence            99998878889999998753

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.1e-26  Score=172.22  Aligned_cols=96  Identities=26%  Similarity=0.414  Sum_probs=87.9

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICY   95 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~   95 (121)
                      .+++++|+++.|+++.+|+++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++.    ..+++.++|
T Consensus        10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   89 (265)
T PRK10575         10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY   89 (265)
T ss_pred             ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence            4699999999998889999999999999999999999999999999999999999999999998864    244667999


Q ss_pred             EeeCCCCCCCCCHHHHHhhc
Q psy16345         96 VLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ++|++.+++.+|+.||+.++
T Consensus        90 v~q~~~~~~~~tv~e~l~~~  109 (265)
T PRK10575         90 LPQQLPAAEGMTVRELVAIG  109 (265)
T ss_pred             eccCCCCCCCccHHHHHHhC
Confidence            99998888889999999875

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.94  E-value=9.7e-27  Score=171.15  Aligned_cols=94  Identities=30%  Similarity=0.462  Sum_probs=85.9

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------------
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------------   87 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------------   87 (121)
                      |+++|+++.|+++.+|+++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++..              
T Consensus         1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~   80 (252)
T TIGR03005         1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK   80 (252)
T ss_pred             CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence            468999999988889999999999999999999999999999999999999999999999987631              


Q ss_pred             ---hhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         88 ---RWKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        88 ---~~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                         .+++.++|++|++.+++.+|++||+.++
T Consensus        81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~  111 (252)
T TIGR03005        81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEA  111 (252)
T ss_pred             HHHHHhhCeEEEecCcccCCCCcHHHHHHHH
Confidence               3467899999999999889999999874

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.94  E-value=6.2e-27  Score=167.14  Aligned_cols=93  Identities=28%  Similarity=0.476  Sum_probs=84.1

Q ss_pred             EeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---h-----hhcccEEE
Q psy16345         24 FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---K-----RWKRKICY   95 (121)
Q Consensus        24 ~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~---~-----~~~~~i~~   95 (121)
                      ++|+++.|+++++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.   .     ..++.++|
T Consensus         1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~   80 (206)
T TIGR03608         1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY   80 (206)
T ss_pred             CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence            478999998889999999999999999999999999999999999999999999999999853   1     24568999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++|++.+++.+|++||+.+..
T Consensus        81 ~~q~~~~~~~~t~~e~~~~~~  101 (206)
T TIGR03608        81 LFQNFALIENETVEENLDLGL  101 (206)
T ss_pred             EecchhhccCCcHHHHHHHHH
Confidence            999999998899999998753

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.94  E-value=9.9e-27  Score=170.66  Aligned_cols=94  Identities=23%  Similarity=0.472  Sum_probs=85.8

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC-----ccEEEECCEeCCh------hh
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD-----SGVIRLNKERLNK------RW   89 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~-----~G~i~~~g~~~~~------~~   89 (121)
                      +++++|++++|+++.+++++||+|++||+++|+|+||||||||+++|+|+++|+     +|+|.++|.++..      .+
T Consensus         1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~   80 (247)
T TIGR00972         1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL   80 (247)
T ss_pred             CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence            378999999998888999999999999999999999999999999999999988     9999999998742      34


Q ss_pred             cccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         90 KRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ++.++|++|++.+++ +|++||+.+.
T Consensus        81 ~~~i~~v~q~~~~~~-~tv~e~l~~~  105 (247)
T TIGR00972        81 RRRVGMVFQKPNPFP-MSIYDNIAYG  105 (247)
T ss_pred             HhheEEEecCcccCC-CCHHHHHHhH
Confidence            668999999998888 8999999875

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.94  E-value=1.1e-26  Score=191.12  Aligned_cols=96  Identities=28%  Similarity=0.448  Sum_probs=89.2

Q ss_pred             EEEEeeeEEEcC--CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345         21 ELVFSGLSVTLD--KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~--~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~   94 (121)
                      .++++||+|+|+  ++++|+|+||+|++|+.+||+|+||||||||+|+|+|+++|++|+|.++|.++.    ..+|++++
T Consensus       451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~  530 (686)
T TIGR03797       451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG  530 (686)
T ss_pred             eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence            599999999995  367999999999999999999999999999999999999999999999999986    36788999


Q ss_pred             EEeeCCCCCCCCCHHHHHhhccc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      ||+|++.+|+. |++||+.++.+
T Consensus       531 ~v~Q~~~lf~g-TI~eNi~~~~~  552 (686)
T TIGR03797       531 VVLQNGRLMSG-SIFENIAGGAP  552 (686)
T ss_pred             EEccCCccCcc-cHHHHHhcCCC
Confidence            99999999977 99999999864

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.94  E-value=6.7e-27  Score=167.79  Aligned_cols=93  Identities=33%  Similarity=0.556  Sum_probs=85.1

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEEee
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYVLQ   98 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v~Q   98 (121)
                      |+++++++.|+++++++++||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++..   .+++.++|++|
T Consensus         1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q   79 (211)
T cd03264           1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ   79 (211)
T ss_pred             CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecC
Confidence            46899999998888999999999999 999999999999999999999999999999999987642   45678999999


Q ss_pred             CCCCCCCCCHHHHHhhc
Q psy16345         99 QDIFFPELTLRQTLEVS  115 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~  115 (121)
                      ++.+++.+|++||+.+.
T Consensus        80 ~~~~~~~~tv~~~l~~~   96 (211)
T cd03264          80 EFGVYPNFTVREFLDYI   96 (211)
T ss_pred             CCcccccCCHHHHHHHH
Confidence            99999889999999864

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.94  E-value=1e-26  Score=166.15  Aligned_cols=95  Identities=31%  Similarity=0.369  Sum_probs=86.8

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---hhhcccEEEEee
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---KRWKRKICYVLQ   98 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~---~~~~~~i~~v~Q   98 (121)
                      ++++|+++.|+++.+++++||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.++.   ..++++++|++|
T Consensus         1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q   80 (201)
T cd03231           1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH   80 (201)
T ss_pred             CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence            46899999998889999999999999999999999999999999999999999999999998864   245678999999


Q ss_pred             CCCCCCCCCHHHHHhhcc
Q psy16345         99 QDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.+++.+|++||+.+..
T Consensus        81 ~~~~~~~~tv~e~l~~~~   98 (201)
T cd03231          81 APGIKTTLSVLENLRFWH   98 (201)
T ss_pred             ccccCCCcCHHHHHHhhc
Confidence            998888899999998754

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.94  E-value=1.3e-26  Score=165.06  Aligned_cols=95  Identities=35%  Similarity=0.464  Sum_probs=86.2

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---hhhcccEEEEee
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---KRWKRKICYVLQ   98 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~---~~~~~~i~~v~Q   98 (121)
                      ++++++++.|+++++|+++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.   ..+++.++|++|
T Consensus         1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q   80 (198)
T TIGR01189         1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH   80 (198)
T ss_pred             CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence            46899999999889999999999999999999999999999999999999999999999998864   234568999999


Q ss_pred             CCCCCCCCCHHHHHhhcc
Q psy16345         99 QDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.+++.+|+.+|+.+..
T Consensus        81 ~~~~~~~~tv~~~l~~~~   98 (198)
T TIGR01189        81 LPGLKPELSALENLHFWA   98 (198)
T ss_pred             CcccccCCcHHHHHHHHH
Confidence            988888899999997653

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.94  E-value=1.5e-26  Score=170.71  Aligned_cols=95  Identities=24%  Similarity=0.425  Sum_probs=87.0

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC--------------
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--------------   86 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~--------------   86 (121)
                      +++++|+++.|+++++++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.              
T Consensus         5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   84 (257)
T PRK10619          5 KLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADK   84 (257)
T ss_pred             cEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccc
Confidence            489999999998889999999999999999999999999999999999999999999999998763              


Q ss_pred             ---hhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         87 ---KRWKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        87 ---~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                         ..+++.++|++|++.+++.+|++||+.++
T Consensus        85 ~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~  116 (257)
T PRK10619         85 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA  116 (257)
T ss_pred             hHHHHHhhceEEEecCcccCCCCcHHHHHHHH
Confidence               13456899999999999889999999764

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.94  E-value=8.2e-27  Score=184.78  Aligned_cols=98  Identities=29%  Similarity=0.415  Sum_probs=91.5

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-----hhhcccEE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-----KRWKRKIC   94 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-----~~~~~~i~   94 (121)
                      ..+++++++|+|+.-++|++|||++.+||++||+|+||||||||+|+|+|.++|++|+|.++|++..     ......|+
T Consensus         7 ~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~   86 (500)
T COG1129           7 PLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIA   86 (500)
T ss_pred             ceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcE
Confidence            3589999999999999999999999999999999999999999999999999999999999999985     24566899


Q ss_pred             EEeeCCCCCCCCCHHHHHhhccc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      .|+|+.+++|+|||.||+.++..
T Consensus        87 ~V~QEl~L~p~LsVaeNifLgre  109 (500)
T COG1129          87 TVHQELSLVPNLSVAENIFLGRE  109 (500)
T ss_pred             EEeechhccCCccHHHHhhcccc
Confidence            99999999999999999998764

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.94  E-value=1.6e-26  Score=166.74  Aligned_cols=94  Identities=30%  Similarity=0.499  Sum_probs=84.3

Q ss_pred             EEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h---hc
Q psy16345         22 LVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R---WK   90 (121)
Q Consensus        22 i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~---~~   90 (121)
                      ++++|+++.|++    +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..    .   ++
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (221)
T TIGR02211         2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR   81 (221)
T ss_pred             EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence            688999999964    479999999999999999999999999999999999999999999999998742    1   22


Q ss_pred             -ccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         91 -RKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        91 -~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                       +.++|++|++.+++.+|++||+.+.
T Consensus        82 ~~~i~~v~q~~~~~~~~tv~~~l~~~  107 (221)
T TIGR02211        82 NKKLGFIYQFHHLLPDFTALENVAMP  107 (221)
T ss_pred             HhcEEEEecccccCCCCcHHHHHHHH
Confidence             5799999999999889999999874

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.4e-26  Score=169.54  Aligned_cols=95  Identities=29%  Similarity=0.463  Sum_probs=86.3

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY   95 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~   95 (121)
                      ++++++|++++|+++.+|+++||+|.+|++++|+|+||||||||+|+|+|+++|++|+|.++|.++..    .+++.++|
T Consensus         2 ~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~   81 (241)
T PRK14250          2 NEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM   81 (241)
T ss_pred             ceEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence            35899999999988889999999999999999999999999999999999999999999999988742    44668999


Q ss_pred             EeeCCCCCCCCCHHHHHhhc
Q psy16345         96 VLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ++|++.+++ .|++||+.+.
T Consensus        82 ~~q~~~~~~-~tv~e~l~~~  100 (241)
T PRK14250         82 VFQQPHLFE-GTVKDNIEYG  100 (241)
T ss_pred             EecCchhch-hhHHHHHhcc
Confidence            999998886 5999999864

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.94  E-value=1.6e-27  Score=174.33  Aligned_cols=96  Identities=26%  Similarity=0.513  Sum_probs=92.5

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD  100 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~  100 (121)
                      ++++++|+++|+++.+++|+||++++|++.|++|+|||||||++|+|+|++.|++|+|.++|.+++...+.+|||+|.+.
T Consensus         2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEER   81 (300)
T COG4152           2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEER   81 (300)
T ss_pred             ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhh
Confidence            58899999999999999999999999999999999999999999999999999999999999999988888999999999


Q ss_pred             CCCCCCCHHHHHhhcc
Q psy16345        101 IFFPELTLRQTLEVSI  116 (121)
Q Consensus       101 ~l~~~ltv~e~l~~~~  116 (121)
                      .|++.+||.|.+.|.+
T Consensus        82 GLy~k~tv~dql~yla   97 (300)
T COG4152          82 GLYPKMTVEDQLKYLA   97 (300)
T ss_pred             ccCccCcHHHHHHHHH
Confidence            9999999999998765

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=2.1e-26  Score=169.31  Aligned_cols=97  Identities=29%  Similarity=0.498  Sum_probs=85.7

Q ss_pred             ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCCh------
Q psy16345         19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLNK------   87 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~------   87 (121)
                      +..|+++|++++|+++.+|+++||+|++|++++|+|+||||||||+|+|+|+.+     |++|+|.++|+++..      
T Consensus         4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   83 (253)
T PRK14242          4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV   83 (253)
T ss_pred             CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence            345999999999988889999999999999999999999999999999999864     589999999988741      


Q ss_pred             hhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         88 RWKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        88 ~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      .+++.++|++|++.+++. |++||+.++.
T Consensus        84 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~  111 (253)
T PRK14242         84 ELRRRVGMVFQKPNPFPK-SIFENVAYGL  111 (253)
T ss_pred             HHhhcEEEEecCCCCCcC-cHHHHHHHHH
Confidence            346689999999988874 9999998753

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.94  E-value=9.5e-27  Score=166.49  Aligned_cols=94  Identities=33%  Similarity=0.458  Sum_probs=82.7

Q ss_pred             EEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-hhcccEEEEeeCC
Q psy16345         23 VFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-RWKRKICYVLQQD  100 (121)
Q Consensus        23 ~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-~~~~~i~~v~Q~~  100 (121)
                      +++|+++.|++ +++|+++||++++|++++|+|||||||||||++|+|+++|++|+|.++|.++.. .+++.++|++|++
T Consensus         1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~   80 (205)
T cd03226           1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV   80 (205)
T ss_pred             CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence            36899999987 789999999999999999999999999999999999999999999999998753 4556799999997


Q ss_pred             C-CCCCCCHHHHHhhcc
Q psy16345        101 I-FFPELTLRQTLEVSI  116 (121)
Q Consensus       101 ~-l~~~ltv~e~l~~~~  116 (121)
                      . .++.+|++||+.+..
T Consensus        81 ~~~~~~~tv~e~l~~~~   97 (205)
T cd03226          81 DYQLFTDSVREELLLGL   97 (205)
T ss_pred             hhhhhhccHHHHHhhhh
Confidence            4 234569999998754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.7e-26  Score=171.20  Aligned_cols=96  Identities=23%  Similarity=0.394  Sum_probs=88.1

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY   95 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~   95 (121)
                      .+|+++|++++|+++.+|+++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|+++..    .+++.++|
T Consensus         6 ~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   85 (265)
T PRK10253          6 ARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGL   85 (265)
T ss_pred             cEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence            46999999999998889999999999999999999999999999999999999999999999998742    34567999


Q ss_pred             EeeCCCCCCCCCHHHHHhhc
Q psy16345         96 VLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ++|++.+++.+|++||+.++
T Consensus        86 v~q~~~~~~~~tv~~~~~~~  105 (265)
T PRK10253         86 LAQNATTPGDITVQELVARG  105 (265)
T ss_pred             eeccCcCCCCCcHHHHHHhC
Confidence            99999988889999999875

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.94  E-value=2.3e-26  Score=165.07  Aligned_cols=95  Identities=28%  Similarity=0.419  Sum_probs=86.6

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-hhcccEEEEeeC
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-RWKRKICYVLQQ   99 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-~~~~~i~~v~Q~   99 (121)
                      +++++|+++.|+++.+++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..+++++|++|+
T Consensus         2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   81 (207)
T PRK13539          2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR   81 (207)
T ss_pred             EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence            5899999999988889999999999999999999999999999999999999999999999987642 256679999998


Q ss_pred             CCCCCCCCHHHHHhhc
Q psy16345        100 DIFFPELTLRQTLEVS  115 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~  115 (121)
                      +.+++.+|++||+.+.
T Consensus        82 ~~~~~~~tv~~~l~~~   97 (207)
T PRK13539         82 NAMKPALTVAENLEFW   97 (207)
T ss_pred             CcCCCCCcHHHHHHHH
Confidence            8888889999998764

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.94  E-value=1.9e-28  Score=174.74  Aligned_cols=97  Identities=35%  Similarity=0.551  Sum_probs=90.7

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKIC   94 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~   94 (121)
                      ..+.++|+.++|+.+.++++|||++++||++||+|||||||||.+.++.|+.+|++|+|.+++.+++.     +.|..+|
T Consensus         3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig   82 (243)
T COG1137           3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG   82 (243)
T ss_pred             cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence            35889999999999999999999999999999999999999999999999999999999999999863     4567899


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |+||++.+|..+||+||+...+
T Consensus        83 YLpQE~SIFr~LtV~dNi~~vl  104 (243)
T COG1137          83 YLPQEASIFRKLTVEDNIMAVL  104 (243)
T ss_pred             cccccchHhhcCcHHHHHHHHH
Confidence            9999999999999999998765

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.94  E-value=6.3e-27  Score=168.14  Aligned_cols=93  Identities=37%  Similarity=0.594  Sum_probs=82.5

Q ss_pred             EEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCC
Q psy16345         23 VFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIF  102 (121)
Q Consensus        23 ~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l  102 (121)
                      +++|++++|+++++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.++|++|++.+
T Consensus         1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-~~~~~i~~v~q~~~~   79 (213)
T cd03235           1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-KERKRIGYVPQRRSI   79 (213)
T ss_pred             CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-HHHhheEEecccccc
Confidence            3689999998888999999999999999999999999999999999999999999999998764 346689999999876


Q ss_pred             C--CCCCHHHHHhhcc
Q psy16345        103 F--PELTLRQTLEVSI  116 (121)
Q Consensus       103 ~--~~ltv~e~l~~~~  116 (121)
                      +  +.+|++||+.+..
T Consensus        80 ~~~~~~tv~e~l~~~~   95 (213)
T cd03235          80 DRDFPISVRDVVLMGL   95 (213)
T ss_pred             ccCCCCcHHHHHHhcc
Confidence            3  3379999998754

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.94  E-value=3e-26  Score=164.10  Aligned_cols=96  Identities=43%  Similarity=0.704  Sum_probs=86.6

Q ss_pred             EEEEeeeEEEcC----CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC---CCccEEEECCEeCCh---hhc
Q psy16345         21 ELVFSGLSVTLD----KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK---LDSGVIRLNKERLNK---RWK   90 (121)
Q Consensus        21 ~i~~~~l~~~~~----~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~---~~~   90 (121)
                      .+.++|++|.|+    ++.+|+++||++++|++++|+|+||||||||+++|+|+++   |++|+|.++|.++..   ..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~   82 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP   82 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence            378999999995    4679999999999999999999999999999999999998   899999999998752   456


Q ss_pred             ccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         91 RKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        91 ~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +.++|++|++.+++.+|++||+.+..
T Consensus        83 ~~i~~~~q~~~~~~~~tv~~~l~~~~  108 (202)
T cd03233          83 GEIIYVSEEDVHFPTLTVRETLDFAL  108 (202)
T ss_pred             ceEEEEecccccCCCCcHHHHHhhhh
Confidence            68999999998998899999998754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=2.4e-26  Score=170.95  Aligned_cols=97  Identities=24%  Similarity=0.413  Sum_probs=86.7

Q ss_pred             ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCC------h
Q psy16345         19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLN------K   87 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~------~   87 (121)
                      ..+|+++|++++|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++     |++|+|.++|.++.      .
T Consensus        11 ~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~   90 (269)
T PRK14259         11 NIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV   90 (269)
T ss_pred             CceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence            346999999999988889999999999999999999999999999999999987     58999999998863      2


Q ss_pred             hhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         88 RWKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        88 ~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      .+++.++|++|++.+++. |++||+.+..
T Consensus        91 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~  118 (269)
T PRK14259         91 EVRRRIGMVFQQPNPFPK-SIYENIAFGA  118 (269)
T ss_pred             HHhhceEEEccCCccchh-hHHHHHhhhh
Confidence            356679999999988875 9999998754

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=3.5e-26  Score=169.84  Aligned_cols=96  Identities=26%  Similarity=0.443  Sum_probs=86.1

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCCh------h
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLNK------R   88 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~~------~   88 (121)
                      ..|+++|+++.|+++.+|+++||+|++|++++|+|+||||||||+|+|+|+++|     ++|+|.++|+++..      .
T Consensus        18 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~   97 (267)
T PRK14235         18 IKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVE   97 (267)
T ss_pred             ceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHH
Confidence            469999999999888899999999999999999999999999999999999874     89999999988741      3


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +++.++|++|++.+++. |+.||+.++.
T Consensus        98 ~~~~i~~v~q~~~~~~~-tv~enl~~~~  124 (267)
T PRK14235         98 LRARVGMVFQKPNPFPK-SIYENVAYGP  124 (267)
T ss_pred             HhhceEEEecCCCCCCC-cHHHHHHHHH
Confidence            46679999999988875 9999998753

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.94  E-value=2.8e-26  Score=165.94  Aligned_cols=94  Identities=27%  Similarity=0.441  Sum_probs=85.4

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDI  101 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~  101 (121)
                      +++++++++|+++.+|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.....+.++|++|++.
T Consensus         1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~   80 (223)
T TIGR03740         1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP   80 (223)
T ss_pred             CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCC
Confidence            46899999998888999999999999999999999999999999999999999999999998875332357999999999


Q ss_pred             CCCCCCHHHHHhhc
Q psy16345        102 FFPELTLRQTLEVS  115 (121)
Q Consensus       102 l~~~ltv~e~l~~~  115 (121)
                      +++.+|++||+.+.
T Consensus        81 ~~~~~t~~~~~~~~   94 (223)
T TIGR03740        81 LYENLTARENLKVH   94 (223)
T ss_pred             ccccCCHHHHHHHH
Confidence            88889999999764

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=2.9e-26  Score=169.23  Aligned_cols=96  Identities=27%  Similarity=0.457  Sum_probs=86.6

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCC------hhh
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLN------KRW   89 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~------~~~   89 (121)
                      +++++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|     ++|+|.++|.++.      ..+
T Consensus         4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~   83 (258)
T PRK14241          4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV   83 (258)
T ss_pred             cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence            58999999999888899999999999999999999999999999999999874     6999999998863      135


Q ss_pred             cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         90 KRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.++|++|++.+++.+|++||+.++.
T Consensus        84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~  110 (258)
T PRK14241         84 RRTIGMVFQRPNPFPTMSIRDNVVAGL  110 (258)
T ss_pred             hcceEEEccccccCCCCcHHHHHHHHH
Confidence            678999999999998899999998653

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.94  E-value=2.9e-26  Score=169.04  Aligned_cols=94  Identities=32%  Similarity=0.476  Sum_probs=85.9

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEEe
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYVL   97 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v~   97 (121)
                      ++++|+++.|+++.+|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..    .+++.++|++
T Consensus         2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~   81 (256)
T TIGR03873         2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE   81 (256)
T ss_pred             ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence            678999999998899999999999999999999999999999999999999999999999988742    3456799999


Q ss_pred             eCCCCCCCCCHHHHHhhc
Q psy16345         98 QQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        98 Q~~~l~~~ltv~e~l~~~  115 (121)
                      |++.+++.+|++||+.++
T Consensus        82 q~~~~~~~~tv~e~l~~~   99 (256)
T TIGR03873        82 QDSDTAVPLTVRDVVALG   99 (256)
T ss_pred             ccCccCCCCCHHHHHHhc
Confidence            998877788999999875

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.94  E-value=3.3e-26  Score=162.62  Aligned_cols=95  Identities=46%  Similarity=0.707  Sum_probs=86.0

Q ss_pred             EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC--CCCccEEEECCEeCChhhcccEE
Q psy16345         21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV--KLDSGVIRLNKERLNKRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~--~~~~G~i~~~g~~~~~~~~~~i~   94 (121)
                      .++++++++.|++    +++++++||++++|++++|+|+||||||||+++|+|+.  +|++|+|.++|+++...+++.++
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~   82 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG   82 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence            4889999999964    67999999999999999999999999999999999986  48999999999987655567899


Q ss_pred             EEeeCCCCCCCCCHHHHHhhc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      |++|++.+++.+|++||+.++
T Consensus        83 ~~~q~~~~~~~~tv~~~l~~~  103 (192)
T cd03232          83 YVEQQDVHSPNLTVREALRFS  103 (192)
T ss_pred             EecccCccccCCcHHHHHHHH
Confidence            999999999889999999874

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.94  E-value=1.6e-26  Score=165.68  Aligned_cols=93  Identities=32%  Similarity=0.513  Sum_probs=82.5

Q ss_pred             EEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEEE
Q psy16345         23 VFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICYV   96 (121)
Q Consensus        23 ~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~v   96 (121)
                      +++++++.|++  +.+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.    ..+++.++|+
T Consensus         1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (211)
T cd03225           1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV   80 (211)
T ss_pred             CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence            36899999987  78999999999999999999999999999999999999999999999998874    2356789999


Q ss_pred             eeCCC-CCCCCCHHHHHhhc
Q psy16345         97 LQQDI-FFPELTLRQTLEVS  115 (121)
Q Consensus        97 ~Q~~~-l~~~ltv~e~l~~~  115 (121)
                      +|++. .++.+|++||+.+.
T Consensus        81 ~q~~~~~~~~~t~~~~l~~~  100 (211)
T cd03225          81 FQNPDDQFFGPTVEEEVAFG  100 (211)
T ss_pred             ecChhhhcCCCcHHHHHHHH
Confidence            99975 35678999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=3.7e-26  Score=168.19  Aligned_cols=95  Identities=22%  Similarity=0.333  Sum_probs=85.4

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCC------hhh
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLN------KRW   89 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~------~~~   89 (121)
                      +++++++++.|+++++|+++||+|++|++++|+|+||||||||+|+|+|+++|     ++|+|.++|.++.      ..+
T Consensus         7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   86 (254)
T PRK14273          7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILEL   86 (254)
T ss_pred             eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHH
Confidence            69999999999888899999999999999999999999999999999999987     4899999998763      134


Q ss_pred             cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         90 KRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.++|++|++.+++ +|++||+.++.
T Consensus        87 ~~~i~~v~q~~~~~~-~tv~eni~~~~  112 (254)
T PRK14273         87 RRKIGMVFQTPNPFL-MSIYDNISYGP  112 (254)
T ss_pred             hhceEEEeecccccc-CcHHHHHHHHH
Confidence            678999999998875 79999998754

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.94  E-value=3.5e-26  Score=162.83  Aligned_cols=96  Identities=50%  Similarity=0.763  Sum_probs=87.7

Q ss_pred             EEEEeeeEEEcCC------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC--CCCccEEEECCEeCCh-hhcc
Q psy16345         21 ELVFSGLSVTLDK------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV--KLDSGVIRLNKERLNK-RWKR   91 (121)
Q Consensus        21 ~i~~~~l~~~~~~------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~--~~~~G~i~~~g~~~~~-~~~~   91 (121)
                      .++++++++.|+.      +++++++||++++|++++|+||||||||||+++|+|++  +|++|+|.++|+++.. .+++
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~   82 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK   82 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence            4889999999975      68999999999999999999999999999999999999  9999999999998864 4567


Q ss_pred             cEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         92 KICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        92 ~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      .++|++|++.+++.+|++||+.+..
T Consensus        83 ~i~~~~q~~~~~~~~t~~~~i~~~~  107 (194)
T cd03213          83 IIGYVPQDDILHPTLTVRETLMFAA  107 (194)
T ss_pred             eEEEccCcccCCCCCcHHHHHHHHH
Confidence            8999999999998899999998643

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.94  E-value=1.7e-26  Score=186.83  Aligned_cols=97  Identities=27%  Similarity=0.462  Sum_probs=88.3

Q ss_pred             EEEEeeeEEEc-CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEE
Q psy16345         21 ELVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~-~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~   95 (121)
                      .++++|+++.| +++++|+|+||++++|+++||+|+||||||||+++|+|++ |++|+|.++|.++.    ..++++++|
T Consensus       349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~  427 (588)
T PRK11174        349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW  427 (588)
T ss_pred             eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence            59999999755 5678999999999999999999999999999999999999 89999999999886    367889999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcccCc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSIADE  119 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~~~~  119 (121)
                      |+|++.+|.. |++||+.++.++.
T Consensus       428 v~Q~~~LF~~-TI~eNI~~g~~~~  450 (588)
T PRK11174        428 VGQNPQLPHG-TLRDNVLLGNPDA  450 (588)
T ss_pred             ecCCCcCCCc-CHHHHhhcCCCCC
Confidence            9999999976 9999999986543

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=4.4e-26  Score=168.38  Aligned_cols=96  Identities=24%  Similarity=0.476  Sum_probs=86.0

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCCh------h
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLNK------R   88 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~~------~   88 (121)
                      .+++++|+++.|+++.+|+++||+|++|+++||+|+||||||||+++|+|+++|     ++|+|.++|.++..      .
T Consensus        11 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   90 (258)
T PRK14268         11 PQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE   90 (258)
T ss_pred             eeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence            469999999999888899999999999999999999999999999999999875     79999999988631      3


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +++.++|++|++.+++ +|++||+.+..
T Consensus        91 ~~~~i~~v~q~~~~~~-~tv~enl~~~~  117 (258)
T PRK14268         91 LRKNVGMVFQKPNPFP-MSIYDNVAYGP  117 (258)
T ss_pred             HhhhEEEEecCCccCc-ccHHHHHHHHH
Confidence            4667999999998887 79999998753

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.94  E-value=2.1e-26  Score=167.80  Aligned_cols=97  Identities=32%  Similarity=0.411  Sum_probs=88.3

Q ss_pred             cEEEEeeeEEEcCCcc----eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhc
Q psy16345         20 LELVFSGLSVTLDKRP----ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWK   90 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~----~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~   90 (121)
                      .+++++|+++.|+.+.    +|++|||++.+||++||+|+||||||||.|+|+|+.+|++|+|.++|++...     ..+
T Consensus         2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~   81 (252)
T COG1124           2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY   81 (252)
T ss_pred             ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence            4689999999998876    9999999999999999999999999999999999999999999999988753     457


Q ss_pred             ccEEEEeeCCC--CCCCCCHHHHHhhcc
Q psy16345         91 RKICYVLQQDI--FFPELTLRQTLEVSI  116 (121)
Q Consensus        91 ~~i~~v~Q~~~--l~~~ltv~e~l~~~~  116 (121)
                      +.+.+|||||.  +.|.+||++.+.-++
T Consensus        82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl  109 (252)
T COG1124          82 RPVQMVFQDPYSSLNPRRTVGRILSEPL  109 (252)
T ss_pred             cceeEEecCCccccCcchhHHHHHhhhh
Confidence            88999999985  889999999887655

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=3.5e-26  Score=167.80  Aligned_cols=94  Identities=20%  Similarity=0.410  Sum_probs=85.1

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC---CCccEEEECCEeCCh----hhcccE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK---LDSGVIRLNKERLNK----RWKRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~----~~~~~i   93 (121)
                      +++++|+++.|+++.+|+++||++++|++++|+|+||||||||+++|+|+++   |++|+|.++|+++..    ..++.+
T Consensus         2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i   81 (246)
T PRK14269          2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV   81 (246)
T ss_pred             ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence            5889999999988889999999999999999999999999999999999974   689999999998752    456689


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +|++|++.+++ .|++||+.++
T Consensus        82 ~~~~q~~~l~~-~tv~eni~~~  102 (246)
T PRK14269         82 GMVFQQPNVFV-KSIYENISYA  102 (246)
T ss_pred             EEEecCCcccc-ccHHHHhhhH
Confidence            99999999887 5999999875

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.94  E-value=1.1e-26  Score=191.58  Aligned_cols=97  Identities=23%  Similarity=0.334  Sum_probs=89.5

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~   94 (121)
                      .|+++|++|+|++  +++|+|+||+|++|+.+||+|+||||||||+|+|+|+++|++|+|.++|.++.    ..++++++
T Consensus       477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~  556 (710)
T TIGR03796       477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVA  556 (710)
T ss_pred             eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhee
Confidence            5999999999964  67999999999999999999999999999999999999999999999999985    26789999


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcccC
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSIAD  118 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~~~  118 (121)
                      ||+|++.+|.. |++||+.++.++
T Consensus       557 ~v~Q~~~lf~g-Ti~eNi~l~~~~  579 (710)
T TIGR03796       557 MVDQDIFLFEG-TVRDNLTLWDPT  579 (710)
T ss_pred             EEecCChhhhc-cHHHHhhCCCCC
Confidence            99999999976 999999987544

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=4.3e-26  Score=169.67  Aligned_cols=97  Identities=26%  Similarity=0.425  Sum_probs=86.4

Q ss_pred             cEEEEeeeEEEcC--CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccE
Q psy16345         20 LELVFSGLSVTLD--KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKI   93 (121)
Q Consensus        20 ~~i~~~~l~~~~~--~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i   93 (121)
                      .+++++|+++.|+  ++++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..    .+++.+
T Consensus         6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i   85 (271)
T PRK13632          6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI   85 (271)
T ss_pred             eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence            4699999999995  4689999999999999999999999999999999999999999999999998752    456789


Q ss_pred             EEEeeCCC-CCCCCCHHHHHhhcc
Q psy16345         94 CYVLQQDI-FFPELTLRQTLEVSI  116 (121)
Q Consensus        94 ~~v~Q~~~-l~~~ltv~e~l~~~~  116 (121)
                      +|++|++. .++.+|++||+.++.
T Consensus        86 ~~v~q~~~~~~~~~tv~enl~~~~  109 (271)
T PRK13632         86 GIIFQNPDNQFIGATVEDDIAFGL  109 (271)
T ss_pred             EEEEeCHHHhcCcccHHHHHHhHH
Confidence            99999974 566789999998753

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=5e-26  Score=168.23  Aligned_cols=96  Identities=25%  Similarity=0.422  Sum_probs=85.8

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCC------hh
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLN------KR   88 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~------~~   88 (121)
                      .+++++|+++.|+++++|+++||+|++|++++|+||||||||||+|+|+|+++     |++|+|.++|.++.      ..
T Consensus        12 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~   91 (260)
T PRK10744         12 SKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIAL   91 (260)
T ss_pred             ceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHH
Confidence            46999999999988889999999999999999999999999999999999986     47999999998873      13


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++++++|++|++.+++ .|+++|+.++.
T Consensus        92 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~  118 (260)
T PRK10744         92 LRAKVGMVFQKPTPFP-MSIYDNIAFGV  118 (260)
T ss_pred             HhcceEEEecCCccCc-CcHHHHHhhhH
Confidence            4678999999998887 79999998753

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.94  E-value=1.2e-26  Score=187.28  Aligned_cols=98  Identities=32%  Similarity=0.568  Sum_probs=91.9

Q ss_pred             EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEE
Q psy16345         21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~   95 (121)
                      .|+++|++|.|+ ++++|+|+||++++||.+||+||||||||||+++|+++++|++|+|.++|.++.    ..+|++++|
T Consensus       328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~  407 (567)
T COG1132         328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGI  407 (567)
T ss_pred             eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccE
Confidence            499999999998 589999999999999999999999999999999999999999999999999986    368999999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcccCc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSIADE  119 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~~~~  119 (121)
                      |+|++.+|.. |++||+.++.+++
T Consensus       408 V~Qd~~LF~~-TI~~NI~~g~~~a  430 (567)
T COG1132         408 VSQDPLLFSG-TIRENIALGRPDA  430 (567)
T ss_pred             Ecccceeecc-cHHHHHhcCCCCC
Confidence            9999999985 9999999998754

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=5.6e-26  Score=167.10  Aligned_cols=95  Identities=26%  Similarity=0.448  Sum_probs=85.8

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC--C---CccEEEECCEeCCh------hh
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK--L---DSGVIRLNKERLNK------RW   89 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~--~---~~G~i~~~g~~~~~------~~   89 (121)
                      .++++|++++|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++  |   ++|+|.++|.++..      .+
T Consensus         4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~   83 (252)
T PRK14256          4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI   83 (252)
T ss_pred             EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHh
Confidence            4899999999988889999999999999999999999999999999999986  3   58999999988741      34


Q ss_pred             cccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         90 KRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ++.++|++|++.+++.+|++||+.++
T Consensus        84 ~~~i~~~~q~~~~~~~~tv~enl~~~  109 (252)
T PRK14256         84 RRRVGMVFQKPNPFPAMSIYDNVIAG  109 (252)
T ss_pred             hccEEEEecCCCCCCcCcHHHHHHhH
Confidence            67899999999999889999999864

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=4.8e-26  Score=167.20  Aligned_cols=97  Identities=27%  Similarity=0.466  Sum_probs=87.0

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC-----ccEEEECCEeCCh------h
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD-----SGVIRLNKERLNK------R   88 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~-----~G~i~~~g~~~~~------~   88 (121)
                      .+++++|+++.|+++++++++||+|++|++++|+|+||||||||+|+|+|+++|.     +|+|.++|.++..      .
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   82 (252)
T PRK14272          3 LLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA   82 (252)
T ss_pred             EEEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence            3689999999998889999999999999999999999999999999999998764     7999999988741      3


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +++.++|++|++.+++.+|++||+.++.
T Consensus        83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~  110 (252)
T PRK14272         83 MRRRVGMVFQKPNPFPTMSVFDNVVAGL  110 (252)
T ss_pred             hhceeEEEeccCccCcCCCHHHHHHHHH
Confidence            4667999999999998899999998643

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.94  E-value=3.9e-26  Score=163.82  Aligned_cols=93  Identities=27%  Similarity=0.478  Sum_probs=82.8

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ   99 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~   99 (121)
                      |+++|++++|+++.  .++||++.+|++++|+||||||||||+|+|+|+++|++|+|.++|.++..  ..++.++|++|+
T Consensus         1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~   78 (211)
T cd03298           1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE   78 (211)
T ss_pred             CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecc
Confidence            46899999998654  39999999999999999999999999999999999999999999998752  235679999999


Q ss_pred             CCCCCCCCHHHHHhhcc
Q psy16345        100 DIFFPELTLRQTLEVSI  116 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~~  116 (121)
                      +.+++.+|++||+.+..
T Consensus        79 ~~~~~~~tv~enl~~~~   95 (211)
T cd03298          79 NNLFAHLTVEQNVGLGL   95 (211)
T ss_pred             cccCCCCcHHHHHhccc
Confidence            99998899999998754

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=5.4e-26  Score=170.55  Aligned_cols=96  Identities=23%  Similarity=0.369  Sum_probs=83.9

Q ss_pred             EEEEeeeEEEcCC-----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh------hh
Q psy16345         21 ELVFSGLSVTLDK-----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK------RW   89 (121)
Q Consensus        21 ~i~~~~l~~~~~~-----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~------~~   89 (121)
                      .++++++++.|+.     +++|+++||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.++..      .+
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI   81 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence            4899999999964     469999999999999999999999999999999999999999999999998742      34


Q ss_pred             cccEEEEeeCCC-CCCCCCHHHHHhhcc
Q psy16345         90 KRKICYVLQQDI-FFPELTLRQTLEVSI  116 (121)
Q Consensus        90 ~~~i~~v~Q~~~-l~~~ltv~e~l~~~~  116 (121)
                      +++++||||++. .+...|++||+.++.
T Consensus        82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~  109 (287)
T PRK13637         82 RKKVGLVFQYPEYQLFEETIEKDIAFGP  109 (287)
T ss_pred             hhceEEEecCchhccccccHHHHHHhHH
Confidence            678999999873 223469999998754

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=5e-26  Score=170.16  Aligned_cols=96  Identities=27%  Similarity=0.361  Sum_probs=85.7

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~   94 (121)
                      +++++|+++.|++  +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|+++..    .+++.++
T Consensus         5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~   84 (279)
T PRK13635          5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG   84 (279)
T ss_pred             eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence            5899999999964  579999999999999999999999999999999999999999999999998752    4466899


Q ss_pred             EEeeCCC-CCCCCCHHHHHhhcc
Q psy16345         95 YVLQQDI-FFPELTLRQTLEVSI  116 (121)
Q Consensus        95 ~v~Q~~~-l~~~ltv~e~l~~~~  116 (121)
                      |++|++. +++..|++||+.++.
T Consensus        85 ~~~q~~~~~~~~~tv~enl~~~~  107 (279)
T PRK13635         85 MVFQNPDNQFVGATVQDDVAFGL  107 (279)
T ss_pred             EEEeCHHHhcccccHHHHHhhhH
Confidence            9999973 566779999998753

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.94  E-value=4.3e-26  Score=166.44  Aligned_cols=94  Identities=31%  Similarity=0.463  Sum_probs=84.0

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC--CCCccEEEECCEeCCh----h-hcccEE
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV--KLDSGVIRLNKERLNK----R-WKRKIC   94 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~--~~~~G~i~~~g~~~~~----~-~~~~i~   94 (121)
                      |+++|+++.|+++.+|+++||+|++|++++|+||||||||||+|+|+|++  +|++|+|.++|+++..    . .+..++
T Consensus         1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (243)
T TIGR01978         1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF   80 (243)
T ss_pred             CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence            46899999998888999999999999999999999999999999999995  7899999999998742    2 234589


Q ss_pred             EEeeCCCCCCCCCHHHHHhhc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      |++|++.+++.+|+++|+.+.
T Consensus        81 ~v~q~~~~~~~~t~~~~~~~~  101 (243)
T TIGR01978        81 LAFQYPEEIPGVSNLEFLRSA  101 (243)
T ss_pred             eeeccccccCCcCHHHHHHHH
Confidence            999999999999999998764

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=5.6e-26  Score=169.44  Aligned_cols=96  Identities=23%  Similarity=0.274  Sum_probs=84.9

Q ss_pred             EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345         21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~   95 (121)
                      +++++|+++.|+ .+++|+++||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.++..    .+++.++|
T Consensus         4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   83 (274)
T PRK13647          4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL   83 (274)
T ss_pred             eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence            589999999996 5679999999999999999999999999999999999999999999999998752    34668999


Q ss_pred             EeeCCC-CCCCCCHHHHHhhcc
Q psy16345         96 VLQQDI-FFPELTLRQTLEVSI  116 (121)
Q Consensus        96 v~Q~~~-l~~~ltv~e~l~~~~  116 (121)
                      ++|++. .++.+|+++|+.++.
T Consensus        84 v~q~~~~~~~~~tv~e~l~~~~  105 (274)
T PRK13647         84 VFQDPDDQVFSSTVWDDVAFGP  105 (274)
T ss_pred             EecChhhhhccCcHHHHHHhhH
Confidence            999973 344579999998754

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=7.7e-26  Score=167.86  Aligned_cols=95  Identities=24%  Similarity=0.395  Sum_probs=85.2

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCCh------h
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLNK------R   88 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~------~   88 (121)
                      .+++++|++++|+++.+|+++||+|++|++++|+|+||||||||+|+|+|+.+     |++|+|.++|+++..      .
T Consensus        20 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   99 (268)
T PRK14248         20 HILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN   99 (268)
T ss_pred             ceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHH
Confidence            35999999999988889999999999999999999999999999999999864     689999999988741      3


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +++.++|++|++.+++. |++||+.++
T Consensus       100 ~~~~i~~v~q~~~~~~~-tv~enl~~~  125 (268)
T PRK14248        100 LRREIGMVFQKPNPFPK-SIYNNITHA  125 (268)
T ss_pred             HhccEEEEecCCccCcc-cHHHHHHHH
Confidence            46689999999988875 999999865

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.94  E-value=1.5e-26  Score=190.74  Aligned_cols=95  Identities=28%  Similarity=0.400  Sum_probs=88.7

Q ss_pred             EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEE
Q psy16345         21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~   95 (121)
                      .|+++|++|+|+ ++++|+|+||+|++|+.+||+|+||||||||+|+|+|+++|++|+|.++|.++.    ..+|++++|
T Consensus       473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~  552 (708)
T TIGR01193       473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY  552 (708)
T ss_pred             cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEE
Confidence            599999999996 478999999999999999999999999999999999999999999999999885    367889999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |+|++.+|+. |++||+.++.
T Consensus       553 v~Q~~~lf~g-TI~eNi~l~~  572 (708)
T TIGR01193       553 LPQEPYIFSG-SILENLLLGA  572 (708)
T ss_pred             EecCceehhH-HHHHHHhccC
Confidence            9999999977 9999999983

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.94  E-value=5.5e-26  Score=168.08  Aligned_cols=96  Identities=26%  Similarity=0.422  Sum_probs=86.4

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC---ccEEEECCEeCCh---------h
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD---SGVIRLNKERLNK---------R   88 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~---------~   88 (121)
                      +|+++|+++.|+++.+|+++||++.+|++++|+|+||||||||+++|+|+++|+   +|+|.++|.++..         .
T Consensus         4 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~   83 (262)
T PRK09984          4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRK   83 (262)
T ss_pred             EEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHH
Confidence            589999999999889999999999999999999999999999999999999876   4999999987631         2


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +++.++|++|++.+++.+|+++|+.++.
T Consensus        84 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~  111 (262)
T PRK09984         84 SRANTGYIFQQFNLVNRLSVLENVLIGA  111 (262)
T ss_pred             HHhheEEEccccccccCCcHHHHHHhhh
Confidence            3567999999999999899999998753

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=5.4e-26  Score=169.52  Aligned_cols=96  Identities=22%  Similarity=0.356  Sum_probs=84.6

Q ss_pred             EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-----hhhcccEE
Q psy16345         21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-----KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-----~~~~~~i~   94 (121)
                      +++++|+++.|+ ++++|+++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++.     ..+++.++
T Consensus         1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (274)
T PRK13644          1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG   80 (274)
T ss_pred             CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence            378999999995 567999999999999999999999999999999999999999999999999874     23467899


Q ss_pred             EEeeCCC-CCCCCCHHHHHhhcc
Q psy16345         95 YVLQQDI-FFPELTLRQTLEVSI  116 (121)
Q Consensus        95 ~v~Q~~~-l~~~ltv~e~l~~~~  116 (121)
                      |++|++. .+...|++||+.+..
T Consensus        81 ~v~q~~~~~~~~~tv~enl~~~~  103 (274)
T PRK13644         81 IVFQNPETQFVGRTVEEDLAFGP  103 (274)
T ss_pred             EEEEChhhhcccchHHHHHHhhH
Confidence            9999975 355679999998754

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.94  E-value=5.6e-26  Score=165.99  Aligned_cols=95  Identities=37%  Similarity=0.575  Sum_probs=86.8

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ   99 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~   99 (121)
                      ++++++++.|+++++|+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++..  ..++.++|++|+
T Consensus         1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~   80 (237)
T TIGR00968         1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH   80 (237)
T ss_pred             CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence            468999999988899999999999999999999999999999999999999999999999998753  345679999999


Q ss_pred             CCCCCCCCHHHHHhhcc
Q psy16345        100 DIFFPELTLRQTLEVSI  116 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~~  116 (121)
                      +.+++.+|+.||+.+..
T Consensus        81 ~~~~~~~t~~enl~~~~   97 (237)
T TIGR00968        81 YALFKHLTVRDNIAFGL   97 (237)
T ss_pred             hhhccCCcHHHHHHhHH
Confidence            99998899999998754

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=8.6e-26  Score=167.73  Aligned_cols=97  Identities=23%  Similarity=0.359  Sum_probs=86.5

Q ss_pred             ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCCh------
Q psy16345         19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLNK------   87 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~------   87 (121)
                      ..+++++|++++|+++++|+++||++.+||+++|+|+||||||||+++|+|+++     |++|+|.++|.++..      
T Consensus        18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~   97 (267)
T PRK14237         18 EIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY   97 (267)
T ss_pred             CeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence            346999999999988899999999999999999999999999999999999986     579999999998741      


Q ss_pred             hhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         88 RWKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        88 ~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      .+++.++|++|++.+++ .|++||+.++.
T Consensus        98 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~  125 (267)
T PRK14237         98 EMRKHIGMVFQRPNPFA-KSIYENITFAL  125 (267)
T ss_pred             HHhcceEEEecCCcccc-ccHHHHHHhHH
Confidence            34667999999998887 59999998753

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=5.3e-26  Score=169.93  Aligned_cols=96  Identities=27%  Similarity=0.411  Sum_probs=85.7

Q ss_pred             EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccE
Q psy16345         21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i   93 (121)
                      +++++|+++.|++   +.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..    .+++.+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i   83 (279)
T PRK13650          4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI   83 (279)
T ss_pred             eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence            5899999999963   459999999999999999999999999999999999999999999999998752    456789


Q ss_pred             EEEeeCCC-CCCCCCHHHHHhhcc
Q psy16345         94 CYVLQQDI-FFPELTLRQTLEVSI  116 (121)
Q Consensus        94 ~~v~Q~~~-l~~~ltv~e~l~~~~  116 (121)
                      +|++|++. +++.+|++||+.++.
T Consensus        84 ~~v~q~~~~~~~~~tv~eni~~~~  107 (279)
T PRK13650         84 GMVFQNPDNQFVGATVEDDVAFGL  107 (279)
T ss_pred             eEEEcChHHhcccccHHHHHHhhH
Confidence            99999973 566789999998764

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=5e-26  Score=170.62  Aligned_cols=95  Identities=22%  Similarity=0.405  Sum_probs=83.9

Q ss_pred             EEEEeeeEEEcCC-----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------
Q psy16345         21 ELVFSGLSVTLDK-----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------   87 (121)
Q Consensus        21 ~i~~~~l~~~~~~-----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------   87 (121)
                      .++++|+++.|++     +++|+++||+|++|+++||+|+||||||||+|+|+|+++|++|+|.++|.++..        
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR   81 (286)
T ss_pred             EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            4899999999963     369999999999999999999999999999999999999999999999998741        


Q ss_pred             hhcccEEEEeeCC--CCCCCCCHHHHHhhcc
Q psy16345         88 RWKRKICYVLQQD--IFFPELTLRQTLEVSI  116 (121)
Q Consensus        88 ~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~  116 (121)
                      .+++.++||||++  .+++ .|++||+.++.
T Consensus        82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~  111 (286)
T PRK13646         82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGP  111 (286)
T ss_pred             HHHhheEEEecChHhccch-hhHHHHHHhhH
Confidence            3567899999986  4665 49999998864

>KOG0058|consensus

Probab=99.94  E-value=1.3e-26  Score=188.17  Aligned_cols=99  Identities=30%  Similarity=0.520  Sum_probs=92.1

Q ss_pred             EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345         21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i   93 (121)
                      .|+++||+|.|..   .++|+|+||+|++||++|||||||+||||+..+|..++.|++|+|.+||.++.    +.+|++|
T Consensus       465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~I  544 (716)
T KOG0058|consen  465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKI  544 (716)
T ss_pred             eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHe
Confidence            5999999999965   46999999999999999999999999999999999999999999999999986    3678999


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhcccCcC
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSIADED  120 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~  120 (121)
                      |+|.|+|.||.. |++||+.++.++++
T Consensus       545 g~V~QEPvLFs~-sI~eNI~YG~~~~t  570 (716)
T KOG0058|consen  545 GLVGQEPVLFSG-SIRENIAYGLDNAT  570 (716)
T ss_pred             eeeeccceeecc-cHHHHHhcCCCCCC
Confidence            999999999976 99999999997654

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.94  E-value=5.8e-26  Score=164.07  Aligned_cols=95  Identities=28%  Similarity=0.530  Sum_probs=86.0

Q ss_pred             EEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhc
Q psy16345         22 LVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWK   90 (121)
Q Consensus        22 i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~   90 (121)
                      ++++|+++.|+.    +.+|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..       ..+
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR   81 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence            678999999964    679999999999999999999999999999999999999999999999998742       245


Q ss_pred             ccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         91 RKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        91 ~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +.++|++|++.+++.+|+.||+.+..
T Consensus        82 ~~i~~~~q~~~~~~~~t~~~n~~~~~  107 (220)
T TIGR02982        82 RNIGYIFQAHNLLGFLTARQNVQMAL  107 (220)
T ss_pred             hheEEEcCChhhcCCCCHHHHHHHHH
Confidence            78999999999998889999998754

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.94  E-value=3.5e-26  Score=184.80  Aligned_cols=96  Identities=24%  Similarity=0.430  Sum_probs=88.8

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~   94 (121)
                      .++++|++++|++  +++|+++||+|++|+.++|+|+||||||||+++|+|+++|++|+|.++|.++..    .+++.++
T Consensus       341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~  420 (582)
T PRK11176        341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA  420 (582)
T ss_pred             eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence            5999999999964  679999999999999999999999999999999999999999999999999862    5788899


Q ss_pred             EEeeCCCCCCCCCHHHHHhhccc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      ||+|++.+|+. |++||+.++.+
T Consensus       421 ~v~Q~~~lf~~-Ti~~Ni~~~~~  442 (582)
T PRK11176        421 LVSQNVHLFND-TIANNIAYART  442 (582)
T ss_pred             EEccCceeecc-hHHHHHhcCCC
Confidence            99999999976 99999999753

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=7.4e-26  Score=166.17  Aligned_cols=95  Identities=23%  Similarity=0.441  Sum_probs=85.3

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCCh------hh
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLNK------RW   89 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~~------~~   89 (121)
                      +|+++|+++.|+++++++++||++++|++++|+|+||||||||+++|+|+++|     ++|+|.++|.++..      .+
T Consensus         3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~   82 (250)
T PRK14262          3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY   82 (250)
T ss_pred             eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence            58999999999888899999999999999999999999999999999999874     89999999988641      34


Q ss_pred             cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         90 KRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.++|++|++.+++ .|++||+.++.
T Consensus        83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~  108 (250)
T PRK14262         83 RKKVGMVFQKPTPFP-MSIYDNVAFGP  108 (250)
T ss_pred             hhhEEEEecCCccCc-ccHHHHHHHHH
Confidence            668999999998887 79999998753

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.94  E-value=2.2e-26  Score=190.21  Aligned_cols=98  Identities=27%  Similarity=0.492  Sum_probs=90.0

Q ss_pred             EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345         21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i   93 (121)
                      .|+++|++|+|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.    +.+++++
T Consensus       478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i  557 (711)
T TIGR00958       478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQV  557 (711)
T ss_pred             eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhc
Confidence            5999999999964   57999999999999999999999999999999999999999999999999985    3578899


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhcccCc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSIADE  119 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~~~~  119 (121)
                      +||+|++.+|.. |++||+.++.++.
T Consensus       558 ~~v~Q~~~lF~g-TIreNI~~g~~~~  582 (711)
T TIGR00958       558 ALVGQEPVLFSG-SVRENIAYGLTDT  582 (711)
T ss_pred             eEEecCcccccc-CHHHHHhcCCCCC
Confidence            999999999976 9999999987543

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.94  E-value=3.2e-26  Score=183.36  Aligned_cols=97  Identities=41%  Similarity=0.658  Sum_probs=89.3

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~   94 (121)
                      .|+++|++|+|++  +++|+++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.    +.++++++
T Consensus       320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~  399 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA  399 (529)
T ss_pred             eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence            5999999999965  47999999999999999999999999999999999999999999999999875    36788999


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcccC
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSIAD  118 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~~~  118 (121)
                      ||+|++.+|+. |++||+.++.++
T Consensus       400 ~v~Q~~~lf~~-ti~~Ni~~~~~~  422 (529)
T TIGR02857       400 WVPQHPFLFAG-TIAENIRLARPD  422 (529)
T ss_pred             EEcCCCcccCc-CHHHHHhccCCC
Confidence            99999999976 999999987654

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=7.7e-26  Score=166.28  Aligned_cols=96  Identities=23%  Similarity=0.477  Sum_probs=86.0

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCCh------h
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLNK------R   88 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~~------~   88 (121)
                      .+++++|++++|+++.+|+++||+|++|++++|+|+||||||||+++|+|+.+|     ++|+|.++|.++..      .
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   82 (251)
T PRK14270          3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE   82 (251)
T ss_pred             cEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence            468999999999888899999999999999999999999999999999999875     78999999998742      3


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      .++.++|++|++.+++ +|++||+.+..
T Consensus        83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~  109 (251)
T PRK14270         83 LRKRVGMVFQKPNPFP-MSIYDNVAYGP  109 (251)
T ss_pred             HHhheEEEecCCCcCC-CcHHHHHHhHH
Confidence            4667999999998887 79999998753

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=8.6e-26  Score=176.39  Aligned_cols=96  Identities=25%  Similarity=0.439  Sum_probs=84.4

Q ss_pred             EEEEeeeEEEcCCcc------------------------eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc
Q psy16345         21 ELVFSGLSVTLDKRP------------------------ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG   76 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~------------------------~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G   76 (121)
                      +|+++|+++.|+.++                        +|+++||+|++||+++|+||||||||||+|+|+|+++|++|
T Consensus         4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG   83 (400)
T PRK10070          4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG   83 (400)
T ss_pred             EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence            477777777776543                        89999999999999999999999999999999999999999


Q ss_pred             EEEECCEeCCh----h----hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         77 VIRLNKERLNK----R----WKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        77 ~i~~~g~~~~~----~----~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +|.++|.++..    .    +++.++|++|++.+++++|++||+.++.
T Consensus        84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~  131 (400)
T PRK10070         84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGM  131 (400)
T ss_pred             EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHH
Confidence            99999998742    1    2457999999999999999999998764

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.94  E-value=6.7e-26  Score=183.63  Aligned_cols=95  Identities=22%  Similarity=0.386  Sum_probs=89.0

Q ss_pred             EEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEE
Q psy16345         21 ELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~   95 (121)
                      .++++|++++|++ +++|+|+||++++|+.+||+|+||||||||+++|+|+++|++|+|.++|.++.    +.++++++|
T Consensus       340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~  419 (592)
T PRK10790        340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAM  419 (592)
T ss_pred             eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEE
Confidence            4999999999964 67999999999999999999999999999999999999999999999999986    367899999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |+|++.+|+. |+++|+.++.
T Consensus       420 v~Q~~~lF~~-Ti~~NI~~~~  439 (592)
T PRK10790        420 VQQDPVVLAD-TFLANVTLGR  439 (592)
T ss_pred             EccCCccccc-hHHHHHHhCC
Confidence            9999999987 9999999986

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=8.6e-26  Score=166.79  Aligned_cols=96  Identities=22%  Similarity=0.400  Sum_probs=85.4

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC--C---CccEEEECCEeCC------hh
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK--L---DSGVIRLNKERLN------KR   88 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~--~---~~G~i~~~g~~~~------~~   88 (121)
                      .+|+++|+++.|+++++|+++||+|++|++++|+|+||||||||+++|+|+++  |   ++|+|.++|+++.      ..
T Consensus        11 ~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~   90 (259)
T PRK14274         11 EVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVE   90 (259)
T ss_pred             ceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHH
Confidence            35999999999988889999999999999999999999999999999999987  3   5899999999874      13


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +++.++|++|++.+++. |++||+.+..
T Consensus        91 ~~~~i~~v~q~~~~~~~-tv~enl~~~~  117 (259)
T PRK14274         91 LRKNIGMVFQKGNPFPQ-SIFDNVAYGP  117 (259)
T ss_pred             HhhceEEEecCCccccc-CHHHHHHhHH
Confidence            46679999999988876 9999998753

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.94  E-value=5.2e-26  Score=169.71  Aligned_cols=95  Identities=32%  Similarity=0.420  Sum_probs=85.2

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC--------ccEEEECCEeCCh----h
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD--------SGVIRLNKERLNK----R   88 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~--------~G~i~~~g~~~~~----~   88 (121)
                      +|+++|++++|+++.+|+++||+|.+|++++|+||||||||||+|+|+|+++|+        +|+|.++|.++..    .
T Consensus         1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~   80 (272)
T PRK13547          1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR   80 (272)
T ss_pred             CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence            378999999998889999999999999999999999999999999999999998        8999999998742    3


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +++.++|++|++.+++.+|++||+.++
T Consensus        81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~  107 (272)
T PRK13547         81 LARLRAVLPQAAQPAFAFSAREIVLLG  107 (272)
T ss_pred             HHhhcEEecccCCCCCCCcHHHHHhhc
Confidence            456789999998766668999999875

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.93  E-value=5.8e-26  Score=181.20  Aligned_cols=96  Identities=23%  Similarity=0.351  Sum_probs=87.9

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h-hcccEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R-WKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~-~~~~i~~   95 (121)
                      +|+++|+++.|+++++|+++||+|.+|+++||+||||||||||+|+|+|+++|++|+|.++|.++..    . .++.++|
T Consensus         4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   83 (501)
T PRK10762          4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGI   83 (501)
T ss_pred             eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence            5999999999988889999999999999999999999999999999999999999999999998742    1 3467999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++|++.+++.+|++||+.++.
T Consensus        84 v~q~~~~~~~~tv~e~l~~~~  104 (501)
T PRK10762         84 IHQELNLIPQLTIAENIFLGR  104 (501)
T ss_pred             EEcchhccCCCcHHHHhhhcc
Confidence            999999999999999998753

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.93  E-value=9e-26  Score=165.72  Aligned_cols=95  Identities=24%  Similarity=0.439  Sum_probs=84.8

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCCh------hh
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLNK------RW   89 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~~------~~   89 (121)
                      .++++|+++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.++     ++|+|.++|.++..      .+
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   82 (250)
T PRK14240          3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL   82 (250)
T ss_pred             eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence            48899999999888899999999999999999999999999999999998763     68999999988742      34


Q ss_pred             cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         90 KRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.++|++|++.+++ +|+++|+.++.
T Consensus        83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~  108 (250)
T PRK14240         83 RKRVGMVFQQPNPFP-MSIYDNVAYGP  108 (250)
T ss_pred             hccEEEEecCCccCc-ccHHHHHHHHH
Confidence            667999999998887 79999998753

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=7.9e-26  Score=169.87  Aligned_cols=95  Identities=25%  Similarity=0.437  Sum_probs=83.7

Q ss_pred             EEEEeeeEEEcCC-----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC--------h
Q psy16345         21 ELVFSGLSVTLDK-----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--------K   87 (121)
Q Consensus        21 ~i~~~~l~~~~~~-----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~--------~   87 (121)
                      .+++++++++|++     +++|+++||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|+++.        .
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (290)
T PRK13634          2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK   81 (290)
T ss_pred             EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            4889999999964     46999999999999999999999999999999999999999999999999873        1


Q ss_pred             hhcccEEEEeeCC--CCCCCCCHHHHHhhcc
Q psy16345         88 RWKRKICYVLQQD--IFFPELTLRQTLEVSI  116 (121)
Q Consensus        88 ~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~  116 (121)
                      ..++.++||+|++  .+++ .|++||+.++.
T Consensus        82 ~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~  111 (290)
T PRK13634         82 PLRKKVGIVFQFPEHQLFE-ETVEKDICFGP  111 (290)
T ss_pred             HHHhhEEEEeeCchhhhhh-hhHHHHHHHHH
Confidence            3456899999987  4554 69999998764

>KOG0057|consensus

Probab=99.93  E-value=2.7e-26  Score=181.92  Aligned_cols=98  Identities=23%  Similarity=0.410  Sum_probs=91.5

Q ss_pred             EEEEeeeEEEcCCcc-eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345         21 ELVFSGLSVTLDKRP-ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~-~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~   95 (121)
                      .|+++|+++.|+.++ +|+++||+|++||.+||+|+|||||||++|+|.++.+ ++|+|+++|+++.+    .+|+.|||
T Consensus       351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~  429 (591)
T KOG0057|consen  351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGV  429 (591)
T ss_pred             cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeE
Confidence            499999999998866 9999999999999999999999999999999999998 89999999999863    67889999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcccCcC
Q psy16345         96 VLQQDIFFPELTLRQTLEVSIADED  120 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~~~~~  120 (121)
                      ||||..||.+ |+.+|+.+|...++
T Consensus       430 VPQd~~LFnd-TIl~NI~YGn~sas  453 (591)
T KOG0057|consen  430 VPQDSVLFND-TILYNIKYGNPSAS  453 (591)
T ss_pred             eCCcccccch-hHHHHhhcCCCCcC
Confidence            9999999987 99999999998654

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.1e-25  Score=167.57  Aligned_cols=95  Identities=22%  Similarity=0.405  Sum_probs=85.7

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCC------hh
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLN------KR   88 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~------~~   88 (121)
                      .+++++|++++|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++     |++|+|.++|.++.      ..
T Consensus        23 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~  102 (271)
T PRK14238         23 VVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE  102 (271)
T ss_pred             eEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence            46999999999988889999999999999999999999999999999999987     68999999998873      13


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +++.++|++|++.+++. |++||+.++
T Consensus       103 ~~~~i~~v~q~~~~~~~-tv~eni~~~  128 (271)
T PRK14238        103 LRTNVGMVFQKPNPFPK-SIYDNVTYG  128 (271)
T ss_pred             HhhhEEEEecCCccccc-cHHHHHHHH
Confidence            46789999999988875 999999865

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.1e-25  Score=167.27  Aligned_cols=95  Identities=25%  Similarity=0.431  Sum_probs=85.7

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCC------hh
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLN------KR   88 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~------~~   88 (121)
                      .+|++++++++|+++.+|+++||+|.+|++++|+|+||||||||+++|+|+++     |++|+|.++|.++.      ..
T Consensus        38 ~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~  117 (285)
T PRK14254         38 TVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVA  117 (285)
T ss_pred             ceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHh
Confidence            46999999999988889999999999999999999999999999999999986     68999999998863      13


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +++.++|++|++.+++. |++||+.+.
T Consensus       118 ~~~~i~~v~q~~~l~~~-tv~enl~~~  143 (285)
T PRK14254        118 LRRRIGMVFQKPNPFPK-SIYDNVAYG  143 (285)
T ss_pred             hhccEEEEecCCccCcC-CHHHHHHHH
Confidence            46789999999988875 999999865

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.93  E-value=6.2e-26  Score=164.91  Aligned_cols=94  Identities=29%  Similarity=0.482  Sum_probs=84.4

Q ss_pred             EEEeeeEEEcCCc--ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345         22 LVFSGLSVTLDKR--PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY   95 (121)
Q Consensus        22 i~~~~l~~~~~~~--~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~   95 (121)
                      ++++|+++.|+++  ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..    .+++.++|
T Consensus         1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (234)
T cd03251           1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL   80 (234)
T ss_pred             CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence            4689999999765  79999999999999999999999999999999999999999999999988642    34667999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++|++.+++ .|++||+.+..
T Consensus        81 ~~q~~~~~~-~tv~enl~~~~  100 (234)
T cd03251          81 VSQDVFLFN-DTVAENIAYGR  100 (234)
T ss_pred             eCCCCeecc-ccHHHHhhccC
Confidence            999998886 59999998764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.93  E-value=1.3e-25  Score=171.74  Aligned_cols=96  Identities=26%  Similarity=0.384  Sum_probs=85.8

Q ss_pred             cEEEEeeeEEEcCC-------------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC
Q psy16345         20 LELVFSGLSVTLDK-------------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN   86 (121)
Q Consensus        20 ~~i~~~~l~~~~~~-------------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~   86 (121)
                      .+|+++||++.|+.             ..+++++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~   86 (331)
T PRK15079          7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL   86 (331)
T ss_pred             ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence            46999999999952             46899999999999999999999999999999999999999999999999874


Q ss_pred             h-------hhcccEEEEeeCC--CCCCCCCHHHHHhhc
Q psy16345         87 K-------RWKRKICYVLQQD--IFFPELTLRQTLEVS  115 (121)
Q Consensus        87 ~-------~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~  115 (121)
                      .       .++++++||+|++  .+++.+|+.+|+.+.
T Consensus        87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~  124 (331)
T PRK15079         87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEP  124 (331)
T ss_pred             cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHH
Confidence            2       2466899999998  588889999999764

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.93  E-value=4.3e-26  Score=184.60  Aligned_cols=98  Identities=33%  Similarity=0.523  Sum_probs=89.8

Q ss_pred             cEEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccE
Q psy16345         20 LELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKI   93 (121)
Q Consensus        20 ~~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i   93 (121)
                      ..++++|++++|++  +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+    .+++.+
T Consensus       337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i  416 (574)
T PRK11160        337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI  416 (574)
T ss_pred             CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence            35999999999964  579999999999999999999999999999999999999999999999998863    678899


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhcccC
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSIAD  118 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~~~  118 (121)
                      +||+|++.+|+. |++||+.++.++
T Consensus       417 ~~v~Q~~~lf~~-ti~~Ni~~~~~~  440 (574)
T PRK11160        417 SVVSQRVHLFSA-TLRDNLLLAAPN  440 (574)
T ss_pred             eEEcccchhhcc-cHHHHhhcCCCc
Confidence            999999999976 999999998654

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=9.6e-26  Score=169.27  Aligned_cols=95  Identities=25%  Similarity=0.357  Sum_probs=83.9

Q ss_pred             EEEEeeeEEEcCC-----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC--------h
Q psy16345         21 ELVFSGLSVTLDK-----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--------K   87 (121)
Q Consensus        21 ~i~~~~l~~~~~~-----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~--------~   87 (121)
                      +|+++|+++.|+.     +.+|+++||+|++|++++|+|+||||||||+|+|+|+++|++|+|+++|.++.        .
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   80 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK   80 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence            4889999999963     25999999999999999999999999999999999999999999999999873        1


Q ss_pred             hhcccEEEEeeCC--CCCCCCCHHHHHhhcc
Q psy16345         88 RWKRKICYVLQQD--IFFPELTLRQTLEVSI  116 (121)
Q Consensus        88 ~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~  116 (121)
                      .+++.++||+|++  .+++ .|++||+.|+.
T Consensus        81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~  110 (288)
T PRK13643         81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGP  110 (288)
T ss_pred             HHHhhEEEEecCcchhccc-chHHHHHHhHH
Confidence            3567899999987  5665 59999998865

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.93  E-value=8.6e-26  Score=180.45  Aligned_cols=95  Identities=29%  Similarity=0.429  Sum_probs=87.4

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~   95 (121)
                      +++++|++++|+++++++++||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.++..     ..++.++|
T Consensus         5 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~   84 (510)
T PRK09700          5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGI   84 (510)
T ss_pred             eEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEE
Confidence            5999999999988889999999999999999999999999999999999999999999999998752     23457999


Q ss_pred             EeeCCCCCCCCCHHHHHhhc
Q psy16345         96 VLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      |+|++.+++.+|++||+.++
T Consensus        85 v~q~~~~~~~~tv~e~l~~~  104 (510)
T PRK09700         85 IYQELSVIDELTVLENLYIG  104 (510)
T ss_pred             EeecccccCCCcHHHHhhhc
Confidence            99999999999999999875

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.3e-25  Score=167.58  Aligned_cols=94  Identities=22%  Similarity=0.365  Sum_probs=82.8

Q ss_pred             EEEEeeeEEEcCC-----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------
Q psy16345         21 ELVFSGLSVTLDK-----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------   87 (121)
Q Consensus        21 ~i~~~~l~~~~~~-----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------   87 (121)
                      .++++|+++.|++     +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..        
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (280)
T PRK13649          2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK   81 (280)
T ss_pred             eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence            4889999999964     369999999999999999999999999999999999999999999999988641        


Q ss_pred             hhcccEEEEeeCC--CCCCCCCHHHHHhhc
Q psy16345         88 RWKRKICYVLQQD--IFFPELTLRQTLEVS  115 (121)
Q Consensus        88 ~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~  115 (121)
                      .+++.++|++|++  .+++ .|++||+.+.
T Consensus        82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~  110 (280)
T PRK13649         82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFG  110 (280)
T ss_pred             HHHhheEEEeeChhhhhcc-ccHHHHHHHH
Confidence            3466799999997  4555 5999999865

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.1e-25  Score=179.85  Aligned_cols=96  Identities=25%  Similarity=0.351  Sum_probs=87.6

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC--CccEEEECCEeCCh-----hhcccE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL--DSGVIRLNKERLNK-----RWKRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~~-----~~~~~i   93 (121)
                      +|+++|++++|+++++|+++||+|++|++++|+||||||||||+|+|+|+++|  ++|+|.++|.++..     .+++.+
T Consensus         5 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   84 (506)
T PRK13549          5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGI   84 (506)
T ss_pred             eEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCe
Confidence            59999999999888899999999999999999999999999999999999986  79999999998752     235679


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +||+|++.+++.+|++||+.++.
T Consensus        85 ~~v~q~~~~~~~~tv~e~l~~~~  107 (506)
T PRK13549         85 AIIHQELALVKELSVLENIFLGN  107 (506)
T ss_pred             EEEEeccccCCCCcHHHHhhhcc
Confidence            99999999999999999998764

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.93  E-value=5e-26  Score=171.73  Aligned_cols=87  Identities=28%  Similarity=0.363  Sum_probs=79.5

Q ss_pred             EEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEEeeCCCCCCC
Q psy16345         29 VTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYVLQQDIFFPE  105 (121)
Q Consensus        29 ~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v~Q~~~l~~~  105 (121)
                      ++|+++++|+++||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.++..   .+++.++|++|++.+++.
T Consensus         1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~   80 (302)
T TIGR01188         1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED   80 (302)
T ss_pred             CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence            35777889999999999999999999999999999999999999999999999998752   456789999999999999


Q ss_pred             CCHHHHHhhc
Q psy16345        106 LTLRQTLEVS  115 (121)
Q Consensus       106 ltv~e~l~~~  115 (121)
                      +|++||+.+.
T Consensus        81 ~tv~e~l~~~   90 (302)
T TIGR01188        81 LTGRENLEMM   90 (302)
T ss_pred             CcHHHHHHHH
Confidence            9999999874

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.93  E-value=1.2e-25  Score=159.85  Aligned_cols=94  Identities=23%  Similarity=0.355  Sum_probs=83.3

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDI  101 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~  101 (121)
                      +++++++++|+++.+++ +||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++....++.++|++|++.
T Consensus         2 l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~   80 (195)
T PRK13541          2 LSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLG   80 (195)
T ss_pred             eEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcC
Confidence            78999999998766665 99999999999999999999999999999999999999999998875433456899999988


Q ss_pred             CCCCCCHHHHHhhcc
Q psy16345        102 FFPELTLRQTLEVSI  116 (121)
Q Consensus       102 l~~~ltv~e~l~~~~  116 (121)
                      +++.+|++||+.+..
T Consensus        81 ~~~~~tv~~~l~~~~   95 (195)
T PRK13541         81 LKLEMTVFENLKFWS   95 (195)
T ss_pred             CCccCCHHHHHHHHH
Confidence            878889999998743

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.93  E-value=1e-25  Score=157.69  Aligned_cols=90  Identities=31%  Similarity=0.580  Sum_probs=81.3

Q ss_pred             EEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345         22 LVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY   95 (121)
Q Consensus        22 i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~   95 (121)
                      ++++|++++|++  +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..    .+++.++|
T Consensus         1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (173)
T cd03246           1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY   80 (173)
T ss_pred             CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence            468999999975  569999999999999999999999999999999999999999999999988742    45678999


Q ss_pred             EeeCCCCCCCCCHHHHH
Q psy16345         96 VLQQDIFFPELTLRQTL  112 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l  112 (121)
                      ++|++.+++. |++||+
T Consensus        81 ~~q~~~~~~~-tv~~~l   96 (173)
T cd03246          81 LPQDDELFSG-SIAENI   96 (173)
T ss_pred             ECCCCccccC-cHHHHC
Confidence            9999988875 999996

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.93  E-value=6.4e-26  Score=183.74  Aligned_cols=97  Identities=31%  Similarity=0.520  Sum_probs=89.6

Q ss_pred             EEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEE
Q psy16345         21 ELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~   95 (121)
                      .++++|++|+|++ +++|+++||++++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++.    ..+++.++|
T Consensus       334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~  413 (588)
T PRK13657        334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAV  413 (588)
T ss_pred             eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence            5999999999965 67999999999999999999999999999999999999999999999999886    267889999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcccC
Q psy16345         96 VLQQDIFFPELTLRQTLEVSIAD  118 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~~~  118 (121)
                      |+|++.+|.. |++||+.++.++
T Consensus       414 v~Q~~~lf~~-Ti~~Ni~~~~~~  435 (588)
T PRK13657        414 VFQDAGLFNR-SIEDNIRVGRPD  435 (588)
T ss_pred             EecCcccccc-cHHHHHhcCCCC
Confidence            9999999976 999999998654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.93  E-value=6.8e-26  Score=175.08  Aligned_cols=88  Identities=27%  Similarity=0.418  Sum_probs=80.7

Q ss_pred             EEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hh----cccEEEEeeCC
Q psy16345         29 VTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RW----KRKICYVLQQD  100 (121)
Q Consensus        29 ~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~----~~~i~~v~Q~~  100 (121)
                      +.|+++.+++++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..    .+    ++.++||+|++
T Consensus         1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~   80 (363)
T TIGR01186         1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF   80 (363)
T ss_pred             CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence            35788889999999999999999999999999999999999999999999999999852    23    67899999999


Q ss_pred             CCCCCCCHHHHHhhcc
Q psy16345        101 IFFPELTLRQTLEVSI  116 (121)
Q Consensus       101 ~l~~~ltv~e~l~~~~  116 (121)
                      .+|+++||+||+.++.
T Consensus        81 ~l~~~~TV~eNi~~~~   96 (363)
T TIGR01186        81 ALFPHMTILQNTSLGP   96 (363)
T ss_pred             cCCCCCCHHHHHHHHH
Confidence            9999999999999864

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.93  E-value=4.6e-26  Score=187.54  Aligned_cols=97  Identities=32%  Similarity=0.508  Sum_probs=89.7

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~   94 (121)
                      .|+++|++|+|++  +++|+|+||+|++|+.+||+|+||||||||+|+|+|+++|++|+|.++|.++.    ..+|+.++
T Consensus       463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~  542 (694)
T TIGR03375       463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG  542 (694)
T ss_pred             eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccE
Confidence            5999999999963  57999999999999999999999999999999999999999999999999986    36788999


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcccC
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSIAD  118 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~~~  118 (121)
                      ||+|++.+|+. |++||+.++.++
T Consensus       543 ~v~Q~~~lf~~-TI~eNi~~~~~~  565 (694)
T TIGR03375       543 YVPQDPRLFYG-TLRDNIALGAPY  565 (694)
T ss_pred             EECCChhhhhh-hHHHHHhCCCCC
Confidence            99999999976 999999998654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.7e-25  Score=164.39  Aligned_cols=95  Identities=24%  Similarity=0.450  Sum_probs=85.0

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCCh------hh
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLNK------RW   89 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~------~~   89 (121)
                      +|+++|++++|+.+++|+++||+|++||+++|+|+||||||||+++|+|+++     |++|+|.++|+++..      .+
T Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~   83 (251)
T PRK14251          4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVEL   83 (251)
T ss_pred             eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHh
Confidence            5899999999988899999999999999999999999999999999999986     479999999998631      34


Q ss_pred             cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         90 KRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.++|++|++.+++ .|++||+.++.
T Consensus        84 ~~~i~~~~q~~~~~~-~tv~enl~~~~  109 (251)
T PRK14251         84 RKEVGMVFQQPTPFP-FSVYDNVAYGL  109 (251)
T ss_pred             hccEEEEecCCccCC-CcHHHHHHHHH
Confidence            667999999998886 69999998653

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.93  E-value=1.3e-25  Score=166.44  Aligned_cols=95  Identities=29%  Similarity=0.510  Sum_probs=83.7

Q ss_pred             EEEEeeeEEEcC---------CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----
Q psy16345         21 ELVFSGLSVTLD---------KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----   87 (121)
Q Consensus        21 ~i~~~~l~~~~~---------~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----   87 (121)
                      +|+++|+++.|+         ++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..    
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~   81 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK   81 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence            488999999995         3679999999999999999999999999999999999999999999999988742    


Q ss_pred             ---hhcccEEEEeeCC--CCCCCCCHHHHHhhc
Q psy16345         88 ---RWKRKICYVLQQD--IFFPELTLRQTLEVS  115 (121)
Q Consensus        88 ---~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~  115 (121)
                         .+++.++|++|++  .+++.+|++||+.+.
T Consensus        82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~  114 (265)
T TIGR02769        82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEP  114 (265)
T ss_pred             HHHHHhhceEEEecChhhhcCCCCCHHHHHHHH
Confidence               1456799999997  466778999998654

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.6e-25  Score=167.96  Aligned_cols=95  Identities=23%  Similarity=0.406  Sum_probs=83.3

Q ss_pred             EEEEeeeEEEcCC-----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------
Q psy16345         21 ELVFSGLSVTLDK-----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------   87 (121)
Q Consensus        21 ~i~~~~l~~~~~~-----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------   87 (121)
                      .++++|+++.|++     +.+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++..        
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK   81 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            5889999999974     469999999999999999999999999999999999999999999999998631        


Q ss_pred             hhcccEEEEeeCC--CCCCCCCHHHHHhhcc
Q psy16345         88 RWKRKICYVLQQD--IFFPELTLRQTLEVSI  116 (121)
Q Consensus        88 ~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~  116 (121)
                      ..++.++|++|++  .++ .+|++||+.++.
T Consensus        82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~  111 (287)
T PRK13641         82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGP  111 (287)
T ss_pred             HHHhceEEEEeChhhhhc-cchHHHHHHHHH
Confidence            3456799999997  355 579999998753

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.2e-25  Score=169.78  Aligned_cols=97  Identities=22%  Similarity=0.389  Sum_probs=84.7

Q ss_pred             ccEEEEeeeEEEcCC-----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh------
Q psy16345         19 PLELVFSGLSVTLDK-----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK------   87 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~-----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~------   87 (121)
                      ..+|+++|+++.|++     +++|+++||+|++|+++||+|+||||||||+++|+|+++|++|+|+++|.++..      
T Consensus        19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~   98 (320)
T PRK13631         19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE   98 (320)
T ss_pred             CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence            346999999999964     359999999999999999999999999999999999999999999999977531      


Q ss_pred             --------------hhcccEEEEeeCC--CCCCCCCHHHHHhhcc
Q psy16345         88 --------------RWKRKICYVLQQD--IFFPELTLRQTLEVSI  116 (121)
Q Consensus        88 --------------~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~  116 (121)
                                    .+++.++||+|++  .+++. |++||+.++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~  142 (320)
T PRK13631         99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGP  142 (320)
T ss_pred             ccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhH
Confidence                          3467899999987  46654 9999998864

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.9e-25  Score=164.23  Aligned_cols=95  Identities=25%  Similarity=0.493  Sum_probs=85.7

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC-----ccEEEECCEeCCh------hh
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD-----SGVIRLNKERLNK------RW   89 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~-----~G~i~~~g~~~~~------~~   89 (121)
                      .++++|++++|+++.+|+++||+|.+|++++|+|+||||||||+++|+|+++|+     +|+|.++|.++..      .+
T Consensus         4 ~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~   83 (251)
T PRK14249          4 KIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNL   83 (251)
T ss_pred             eEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHh
Confidence            588999999998888999999999999999999999999999999999999987     6999999988641      34


Q ss_pred             cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         90 KRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.++|++|++.+++. |++||+.+..
T Consensus        84 ~~~i~~v~q~~~~~~~-tv~enl~~~~  109 (251)
T PRK14249         84 RKRVGMVFQQPNPFPK-SIFDNVAFGP  109 (251)
T ss_pred             hceEEEEecCCccCcC-cHHHHHhhHH
Confidence            6789999999998875 9999998753

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.7e-25  Score=164.29  Aligned_cols=94  Identities=32%  Similarity=0.427  Sum_probs=84.0

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC--CC---CccEEEECCEeCC------hhh
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV--KL---DSGVIRLNKERLN------KRW   89 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~--~~---~~G~i~~~g~~~~------~~~   89 (121)
                      +++++|++++|+++.+++++||+|.+|++++|+|+||||||||+++|+|+.  .|   ++|+|.++|.++.      ..+
T Consensus         5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~   84 (252)
T PRK14239          5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL   84 (252)
T ss_pred             eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhh
Confidence            589999999998888999999999999999999999999999999999985  36   4899999998873      134


Q ss_pred             cccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         90 KRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ++.++|++|++.+++ +|++||+.++
T Consensus        85 ~~~i~~v~q~~~~~~-~tv~enl~~~  109 (252)
T PRK14239         85 RKEIGMVFQQPNPFP-MSIYENVVYG  109 (252)
T ss_pred             hhcEEEEecCCccCc-CcHHHHHHHH
Confidence            668999999998887 7999999875

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.9e-25  Score=165.58  Aligned_cols=97  Identities=25%  Similarity=0.436  Sum_probs=85.9

Q ss_pred             CccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCC------
Q psy16345         18 RPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLN------   86 (121)
Q Consensus        18 ~~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~------   86 (121)
                      .+.+|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|++++     ++|+|.++|.++.      
T Consensus        17 ~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~   96 (274)
T PRK14265         17 DHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS   96 (274)
T ss_pred             CCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence            44579999999999888899999999999999999999999999999999999863     5899999998873      


Q ss_pred             hhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         87 KRWKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        87 ~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ..+++.++|++|++.+++. |+++|+.++
T Consensus        97 ~~~~~~i~~v~q~~~l~~~-tv~~nl~~~  124 (274)
T PRK14265         97 VKLRRQVGMVFQRPNPFPK-SIYENIAFA  124 (274)
T ss_pred             HHHhhcEEEEccCCccccc-cHHHHHHhH
Confidence            1346789999999988875 999999875

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.93  E-value=1.3e-25  Score=163.55  Aligned_cols=95  Identities=34%  Similarity=0.509  Sum_probs=86.4

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ   99 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~   99 (121)
                      +++++++++|+++++++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|+++..  ..++.++|++|+
T Consensus         1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~   80 (232)
T cd03300           1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN   80 (232)
T ss_pred             CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence            468999999988899999999999999999999999999999999999999999999999998753  235679999999


Q ss_pred             CCCCCCCCHHHHHhhcc
Q psy16345        100 DIFFPELTLRQTLEVSI  116 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~~  116 (121)
                      +.+++.+|+++|+.+..
T Consensus        81 ~~~~~~~t~~~nl~~~~   97 (232)
T cd03300          81 YALFPHLTVFENIAFGL   97 (232)
T ss_pred             cccCCCCcHHHHHHHHH
Confidence            99988889999998653

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.93  E-value=1.7e-25  Score=178.92  Aligned_cols=96  Identities=26%  Similarity=0.470  Sum_probs=87.9

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h-hcccEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R-WKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~-~~~~i~~   95 (121)
                      +|+++|++++|+++.+|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.++|.++..    . .++.++|
T Consensus        11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   90 (510)
T PRK15439         11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYL   90 (510)
T ss_pred             eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence            5999999999998889999999999999999999999999999999999999999999999988742    2 2356999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++|++.+++.+|++||+.++.
T Consensus        91 v~q~~~~~~~~tv~e~l~~~~  111 (510)
T PRK15439         91 VPQEPLLFPNLSVKENILFGL  111 (510)
T ss_pred             EeccCccCCCCcHHHHhhccc
Confidence            999999999999999998764

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1e-25  Score=167.58  Aligned_cols=95  Identities=21%  Similarity=0.337  Sum_probs=83.5

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC------hhhcccEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN------KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~------~~~~~~i~   94 (121)
                      +|+++|++++|+++.+|+++||+|.+|++++|+|+||||||||+|+|+|+++|++|+|.++|+++.      ..+++.++
T Consensus         1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~   80 (271)
T PRK13638          1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA   80 (271)
T ss_pred             CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence            378999999998888999999999999999999999999999999999999999999999999873      13456799


Q ss_pred             EEeeCCCC-CCCCCHHHHHhhc
Q psy16345         95 YVLQQDIF-FPELTLRQTLEVS  115 (121)
Q Consensus        95 ~v~Q~~~l-~~~ltv~e~l~~~  115 (121)
                      |++|++.+ +...++.+|+.+.
T Consensus        81 ~v~q~~~~~~~~~~~~~~l~~~  102 (271)
T PRK13638         81 TVFQDPEQQIFYTDIDSDIAFS  102 (271)
T ss_pred             EEeeChhhccccccHHHHHHHH
Confidence            99999752 3345899998764

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.3e-25  Score=163.87  Aligned_cols=96  Identities=29%  Similarity=0.470  Sum_probs=85.0

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCCh------h
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLNK------R   88 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~~------~   88 (121)
                      .+|+++|+++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+.++     ++|+|.++|+++..      .
T Consensus         5 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   84 (253)
T PRK14261          5 IILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA   84 (253)
T ss_pred             ceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence            369999999999988999999999999999999999999999999999998753     48999999988742      3


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      .++.++|++|++.+++. |++||+.++.
T Consensus        85 ~~~~i~~~~q~~~~~~~-tv~eni~~~~  111 (253)
T PRK14261         85 LRRKIGMVFQRPNPFPK-SIYENVAYGP  111 (253)
T ss_pred             hhceEEEEecCCccCcc-cHHHHHHhhH
Confidence            45679999999988875 9999998754

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.93  E-value=1.5e-25  Score=161.18  Aligned_cols=92  Identities=32%  Similarity=0.576  Sum_probs=83.0

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ   99 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~   99 (121)
                      ++++|+++.|+.  .++++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|+++..  .+++.++|++|+
T Consensus         1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~   78 (213)
T TIGR01277         1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE   78 (213)
T ss_pred             CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence            368999999974  5789999999999999999999999999999999999999999999998753  356779999999


Q ss_pred             CCCCCCCCHHHHHhhc
Q psy16345        100 DIFFPELTLRQTLEVS  115 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~  115 (121)
                      +.+++.+|++||+.+.
T Consensus        79 ~~~~~~~t~~en~~~~   94 (213)
T TIGR01277        79 NNLFAHLTVRQNIGLG   94 (213)
T ss_pred             CccCCCCcHHHHHHhH
Confidence            9999889999999764

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.93  E-value=9.7e-26  Score=158.35  Aligned_cols=90  Identities=33%  Similarity=0.499  Sum_probs=81.1

Q ss_pred             EEEeeeEEEcCCc--ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEE
Q psy16345         22 LVFSGLSVTLDKR--PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYV   96 (121)
Q Consensus        22 i~~~~l~~~~~~~--~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v   96 (121)
                      ++++++++.|+++  ++++++||++++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++..   .+++.++|+
T Consensus         1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~   80 (178)
T cd03247           1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL   80 (178)
T ss_pred             CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence            4689999999764  79999999999999999999999999999999999999999999999987642   356789999


Q ss_pred             eeCCCCCCCCCHHHHH
Q psy16345         97 LQQDIFFPELTLRQTL  112 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l  112 (121)
                      +|++.+++ .|++||+
T Consensus        81 ~q~~~~~~-~tv~~~i   95 (178)
T cd03247          81 NQRPYLFD-TTLRNNL   95 (178)
T ss_pred             ccCCeeec-ccHHHhh
Confidence            99998886 5999997

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.93  E-value=8.6e-26  Score=163.70  Aligned_cols=95  Identities=32%  Similarity=0.572  Sum_probs=85.4

Q ss_pred             EEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345         21 ELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~   95 (121)
                      .++++|+++.|++ +.+++++||++++|++++|+|||||||||||++|+|+++|++|+|.++|.++..    .+++.++|
T Consensus         2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   81 (229)
T cd03254           2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV   81 (229)
T ss_pred             eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence            3789999999975 579999999999999999999999999999999999999999999999988742    45677999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++|++.+++. |++||+.+..
T Consensus        82 ~~q~~~~~~~-tv~~~~~~~~  101 (229)
T cd03254          82 VLQDTFLFSG-TIMENIRLGR  101 (229)
T ss_pred             ecCCchhhhh-HHHHHHhccC
Confidence            9999988876 9999998764

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.6e-25  Score=167.64  Aligned_cols=96  Identities=24%  Similarity=0.347  Sum_probs=84.5

Q ss_pred             EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC------hhhcccE
Q psy16345         21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN------KRWKRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~------~~~~~~i   93 (121)
                      +|+++|+++.|+ ++.+|+++||+|.+||+++|+|+||||||||+|+|+|+++|++|+|.++|.++.      ..+++.+
T Consensus         5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i   84 (283)
T PRK13636          5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV   84 (283)
T ss_pred             eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence            599999999996 578999999999999999999999999999999999999999999999999873      2456789


Q ss_pred             EEEeeCCC-CCCCCCHHHHHhhcc
Q psy16345         94 CYVLQQDI-FFPELTLRQTLEVSI  116 (121)
Q Consensus        94 ~~v~Q~~~-l~~~ltv~e~l~~~~  116 (121)
                      +|++|++. .+...|++||+.++.
T Consensus        85 g~v~q~~~~~~~~~tv~e~l~~~~  108 (283)
T PRK13636         85 GMVFQDPDNQLFSASVYQDVSFGA  108 (283)
T ss_pred             EEEecCcchhhccccHHHHHHhHH
Confidence            99999973 233569999998743

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.8e-25  Score=167.27  Aligned_cols=97  Identities=24%  Similarity=0.343  Sum_probs=85.6

Q ss_pred             cEEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc---cEEEECCEeCCh----hhc
Q psy16345         20 LELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS---GVIRLNKERLNK----RWK   90 (121)
Q Consensus        20 ~~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~---G~i~~~g~~~~~----~~~   90 (121)
                      .+++++|+++.|++  +++++++||+|++|+++||+|+||||||||+++|+|+++|++   |+|.++|.++..    .++
T Consensus         4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~   83 (282)
T PRK13640          4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR   83 (282)
T ss_pred             ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence            36999999999964  569999999999999999999999999999999999999987   899999998852    346


Q ss_pred             ccEEEEeeCCC-CCCCCCHHHHHhhcc
Q psy16345         91 RKICYVLQQDI-FFPELTLRQTLEVSI  116 (121)
Q Consensus        91 ~~i~~v~Q~~~-l~~~ltv~e~l~~~~  116 (121)
                      ++++|++|++. +++..|++||+.+..
T Consensus        84 ~~ig~v~q~~~~~~~~~tv~enl~~~~  110 (282)
T PRK13640         84 EKVGIVFQNPDNQFVGATVGDDVAFGL  110 (282)
T ss_pred             hheEEEEECHHHhhccCCHHHHHHhhH
Confidence            68999999984 566789999998753

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2e-25  Score=165.87  Aligned_cols=97  Identities=25%  Similarity=0.375  Sum_probs=85.8

Q ss_pred             cEEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccE
Q psy16345         20 LELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKI   93 (121)
Q Consensus        20 ~~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i   93 (121)
                      .+++++|+++.|++  +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..    .+++.+
T Consensus         6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   85 (269)
T PRK13648          6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI   85 (269)
T ss_pred             ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence            35999999999975  459999999999999999999999999999999999999999999999998742    456789


Q ss_pred             EEEeeCCC-CCCCCCHHHHHhhcc
Q psy16345         94 CYVLQQDI-FFPELTLRQTLEVSI  116 (121)
Q Consensus        94 ~~v~Q~~~-l~~~ltv~e~l~~~~  116 (121)
                      +|++|++. +++..++.+|+.+..
T Consensus        86 ~~v~q~~~~~~~~~~v~~~~~~~~  109 (269)
T PRK13648         86 GIVFQNPDNQFVGSIVKYDVAFGL  109 (269)
T ss_pred             eEEEeChHHhcccccHHHHHHhhH
Confidence            99999985 666779999988753

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.93  E-value=1.2e-25  Score=157.14  Aligned_cols=90  Identities=39%  Similarity=0.631  Sum_probs=81.2

Q ss_pred             EEEeeeEEEcCCc--ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345         22 LVFSGLSVTLDKR--PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY   95 (121)
Q Consensus        22 i~~~~l~~~~~~~--~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~   95 (121)
                      ++++++++.|+++  .+++++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|.++..    .+++.++|
T Consensus         1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (171)
T cd03228           1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY   80 (171)
T ss_pred             CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence            4689999999775  79999999999999999999999999999999999999999999999988742    34667999


Q ss_pred             EeeCCCCCCCCCHHHHH
Q psy16345         96 VLQQDIFFPELTLRQTL  112 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l  112 (121)
                      ++|++.+++ .|++||+
T Consensus        81 ~~~~~~~~~-~t~~e~l   96 (171)
T cd03228          81 VPQDPFLFS-GTIRENI   96 (171)
T ss_pred             EcCCchhcc-chHHHHh
Confidence            999998876 5999996

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.9e-25  Score=178.22  Aligned_cols=96  Identities=28%  Similarity=0.454  Sum_probs=88.3

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~   95 (121)
                      +++++|+++.|+++++|+++||++++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++..     .+++.++|
T Consensus         4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~   83 (501)
T PRK11288          4 YLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAI   83 (501)
T ss_pred             eEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEE
Confidence            5899999999988889999999999999999999999999999999999999999999999988741     34678999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++|++.+++.+|+++|+.++.
T Consensus        84 v~q~~~~~~~~tv~~~l~~~~  104 (501)
T PRK11288         84 IYQELHLVPEMTVAENLYLGQ  104 (501)
T ss_pred             EEechhccCCCCHHHHHHhcc
Confidence            999999999999999998753

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2e-25  Score=164.94  Aligned_cols=94  Identities=24%  Similarity=0.462  Sum_probs=84.8

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCC------hhh
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLN------KRW   89 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~------~~~   89 (121)
                      +++++|+++.|+++.+|+++||+|++|++++|+|+||||||||+|+|+|+++|     ++|+|.++|+++.      ..+
T Consensus         7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   86 (259)
T PRK14260          7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRL   86 (259)
T ss_pred             eEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhh
Confidence            58999999999888899999999999999999999999999999999999885     4899999998863      134


Q ss_pred             cccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         90 KRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ++.++|++|++.+++ +|++||+.++
T Consensus        87 ~~~i~~v~q~~~l~~-~tv~enl~~~  111 (259)
T PRK14260         87 RRQIGMVFQRPNPFP-MSIYENVAYG  111 (259)
T ss_pred             hhheEEEecccccCC-ccHHHHHHHH
Confidence            668999999998887 7999999875

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.93  E-value=1.3e-25  Score=162.85  Aligned_cols=94  Identities=38%  Similarity=0.640  Sum_probs=85.8

Q ss_pred             EEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC---CCccEEEECCEeCCh-hhcccE
Q psy16345         22 LVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK---LDSGVIRLNKERLNK-RWKRKI   93 (121)
Q Consensus        22 i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~-~~~~~i   93 (121)
                      +.+++++++|..    +++++++||+|++|++++|+||||||||||+|+|+|+++   |++|+|.++|.++.. .+++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i   83 (226)
T cd03234           4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCV   83 (226)
T ss_pred             ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccE
Confidence            578999999954    589999999999999999999999999999999999999   899999999998753 456789


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +|++|++.+++.+|++||+.++
T Consensus        84 ~~~~q~~~~~~~~tv~enl~~~  105 (226)
T cd03234          84 AYVRQDDILLPGLTVRETLTYT  105 (226)
T ss_pred             EEeCCCCccCcCCcHHHHHHHH
Confidence            9999999999999999999875

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.2e-25  Score=166.50  Aligned_cols=96  Identities=22%  Similarity=0.380  Sum_probs=86.6

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCCh-----hh
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLNK-----RW   89 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~~-----~~   89 (121)
                      .+++++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|     ++|+|.++|.++..     .+
T Consensus        20 ~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~   99 (276)
T PRK14271         20 PAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEF   99 (276)
T ss_pred             cEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHH
Confidence            368999999999988999999999999999999999999999999999999985     69999999988742     35


Q ss_pred             cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         90 KRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.++|++|++.+++ .|+++|+.++.
T Consensus       100 ~~~i~~v~q~~~l~~-~tv~eni~~~~  125 (276)
T PRK14271        100 RRRVGMLFQRPNPFP-MSIMDNVLAGV  125 (276)
T ss_pred             hhheEEeccCCccCC-ccHHHHHHHHH
Confidence            678999999998887 79999998753

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.9e-25  Score=162.53  Aligned_cols=92  Identities=30%  Similarity=0.507  Sum_probs=82.7

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ   99 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~   99 (121)
                      ++++|++++|++..  .++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++..  ..++.++|++|+
T Consensus         2 l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~   79 (232)
T PRK10771          2 LKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQE   79 (232)
T ss_pred             eEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecc
Confidence            78999999997643  49999999999999999999999999999999999999999999998752  234679999999


Q ss_pred             CCCCCCCCHHHHHhhc
Q psy16345        100 DIFFPELTLRQTLEVS  115 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~  115 (121)
                      +.+++.+|+.||+.+.
T Consensus        80 ~~~~~~~tv~e~l~~~   95 (232)
T PRK10771         80 NNLFSHLTVAQNIGLG   95 (232)
T ss_pred             cccccCCcHHHHHhcc
Confidence            9999989999999875

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.7e-25  Score=165.94  Aligned_cols=96  Identities=22%  Similarity=0.330  Sum_probs=84.1

Q ss_pred             EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345         21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~   95 (121)
                      +++++|++++|+ .+.+|+++||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|+++..    .+++.++|
T Consensus         3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   82 (277)
T PRK13652          3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL   82 (277)
T ss_pred             eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence            488999999995 4679999999999999999999999999999999999999999999999998742    45678999


Q ss_pred             EeeCCC-CCCCCCHHHHHhhcc
Q psy16345         96 VLQQDI-FFPELTLRQTLEVSI  116 (121)
Q Consensus        96 v~Q~~~-l~~~ltv~e~l~~~~  116 (121)
                      ++|++. .+...|++||+.++.
T Consensus        83 v~q~~~~~~~~~tv~~~l~~~~  104 (277)
T PRK13652         83 VFQNPDDQIFSPTVEQDIAFGP  104 (277)
T ss_pred             EecCcccccccccHHHHHHhHH
Confidence            999974 233579999998643

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.1e-25  Score=168.87  Aligned_cols=95  Identities=25%  Similarity=0.420  Sum_probs=82.1

Q ss_pred             EEEEeeeEEEcCCc-----ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---------
Q psy16345         21 ELVFSGLSVTLDKR-----PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---------   86 (121)
Q Consensus        21 ~i~~~~l~~~~~~~-----~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~---------   86 (121)
                      .|+++|+++.|+++     .+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+..         
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE   81 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence            48999999999653     5999999999999999999999999999999999999999999999876531         


Q ss_pred             -------------------hhhcccEEEEeeCC--CCCCCCCHHHHHhhcc
Q psy16345         87 -------------------KRWKRKICYVLQQD--IFFPELTLRQTLEVSI  116 (121)
Q Consensus        87 -------------------~~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~  116 (121)
                                         ..+++.++||||++  .++ ..||+||+.|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~  131 (305)
T PRK13651         82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGP  131 (305)
T ss_pred             ccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhH
Confidence                               23467899999986  355 469999998864

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.93  E-value=3.5e-25  Score=164.84  Aligned_cols=95  Identities=27%  Similarity=0.478  Sum_probs=85.8

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCCh------h
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLNK------R   88 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~------~   88 (121)
                      .+++++|+++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++     |++|+|.++|.++..      .
T Consensus        24 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~  103 (272)
T PRK14236         24 TALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAE  103 (272)
T ss_pred             cEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHH
Confidence            36999999999988889999999999999999999999999999999999987     479999999998742      3


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +++.++|++|++.+++. |++||+.+.
T Consensus       104 ~~~~i~~v~q~~~l~~~-tv~enl~~~  129 (272)
T PRK14236        104 LRRRVGMVFQRPNPFPK-SIYENVVYG  129 (272)
T ss_pred             HhccEEEEecCCccCcc-cHHHHHHHH
Confidence            46789999999988886 999999875

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.93  E-value=1.2e-25  Score=163.76  Aligned_cols=94  Identities=24%  Similarity=0.459  Sum_probs=83.5

Q ss_pred             EEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345         22 LVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY   95 (121)
Q Consensus        22 i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~   95 (121)
                      ++++|++++|+.  +++++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..    .+++.++|
T Consensus         1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (237)
T cd03252           1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV   80 (237)
T ss_pred             CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence            468999999963  579999999999999999999999999999999999999999999999988642    34677999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++|++.+++ .|++||+.+..
T Consensus        81 ~~q~~~~~~-~tv~~nl~~~~  100 (237)
T cd03252          81 VLQENVLFN-RSIRDNIALAD  100 (237)
T ss_pred             EcCCchhcc-chHHHHhhccC
Confidence            999988775 59999998754

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.93  E-value=2.3e-25  Score=157.03  Aligned_cols=91  Identities=30%  Similarity=0.425  Sum_probs=82.4

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~   95 (121)
                      +++++|++++|    +++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..     ..+++++|
T Consensus         4 ~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (182)
T cd03215           4 VLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAY   79 (182)
T ss_pred             EEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEE
Confidence            58999999998    9999999999999999999999999999999999999999999999988752     34668999


Q ss_pred             EeeCC---CCCCCCCHHHHHhhc
Q psy16345         96 VLQQD---IFFPELTLRQTLEVS  115 (121)
Q Consensus        96 v~Q~~---~l~~~ltv~e~l~~~  115 (121)
                      ++|++   .+++.+|++||+.+.
T Consensus        80 ~~q~~~~~~~~~~~t~~e~l~~~  102 (182)
T cd03215          80 VPEDRKREGLVLDLSVAENIALS  102 (182)
T ss_pred             ecCCcccCcccCCCcHHHHHHHH
Confidence            99985   477888999999764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.1e-25  Score=163.73  Aligned_cols=95  Identities=25%  Similarity=0.492  Sum_probs=85.4

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCC-----hhhc
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLN-----KRWK   90 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~-----~~~~   90 (121)
                      +++++|+++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|     ++|+|.++|.++.     ..++
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~   82 (249)
T PRK14253          3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR   82 (249)
T ss_pred             eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence            58999999999888999999999999999999999999999999999999886     5899999998863     2456


Q ss_pred             ccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         91 RKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        91 ~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +.++|++|++.+++ .|++||+.++.
T Consensus        83 ~~i~~~~q~~~~~~-~tv~~~l~~~~  107 (249)
T PRK14253         83 IKVGMVFQKPNPFP-MSIYENVAYGL  107 (249)
T ss_pred             hheeEEecCCCcCc-ccHHHHHHhHH
Confidence            67999999998887 79999998753

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.1e-25  Score=171.71  Aligned_cols=93  Identities=31%  Similarity=0.460  Sum_probs=83.1

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hhccc
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RWKRK   92 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~~~~   92 (121)
                      ||++ |++++|+++. + ++||++++|++++|+||||||||||||+|+|+++|++|+|.++|+++..        ..++.
T Consensus         1 ~l~~-~l~k~~~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   77 (352)
T PRK11144          1 MLEL-NFKQQLGDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR   77 (352)
T ss_pred             CeEE-EEEEEeCCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence            3677 9999998754 3 8999999999999999999999999999999999999999999988642        24678


Q ss_pred             EEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         93 ICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        93 i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++|++|++.+|+++|++||+.++.
T Consensus        78 i~~v~q~~~l~~~~tv~enl~~~~  101 (352)
T PRK11144         78 IGYVFQDARLFPHYKVRGNLRYGM  101 (352)
T ss_pred             EEEEcCCcccCCCCcHHHHHHhhh
Confidence            999999999999999999999865

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.93  E-value=9.7e-26  Score=181.90  Aligned_cols=97  Identities=28%  Similarity=0.488  Sum_probs=88.9

Q ss_pred             EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345         21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i   93 (121)
                      .|+++|++++|+.   +.+|+++||++++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++.    ..+++.+
T Consensus       337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i  416 (576)
T TIGR02204       337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM  416 (576)
T ss_pred             eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc
Confidence            5999999999964   57999999999999999999999999999999999999999999999999875    2567889


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhcccC
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSIAD  118 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~~~  118 (121)
                      +|++|++.+|+. |++||+.++.++
T Consensus       417 ~~~~Q~~~lf~~-Ti~~Ni~~~~~~  440 (576)
T TIGR02204       417 ALVPQDPVLFAA-SVMENIRYGRPD  440 (576)
T ss_pred             eEEccCCccccc-cHHHHHhcCCCC
Confidence            999999999976 999999997654

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=3.7e-25  Score=162.60  Aligned_cols=95  Identities=24%  Similarity=0.369  Sum_probs=84.6

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC--C---CccEEEECCEeCC------hh
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK--L---DSGVIRLNKERLN------KR   88 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~--~---~~G~i~~~g~~~~------~~   88 (121)
                      .+++++|++++|+++++|+++||+|.+|++++|+|+||||||||+++|+|+.+  |   ++|+|.++|.++.      ..
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   83 (252)
T PRK14255          4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ   83 (252)
T ss_pred             ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence            35899999999998889999999999999999999999999999999999865  4   4899999998873      13


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +++.++|++|++.+++ .|+++|+.+.
T Consensus        84 ~~~~i~~~~q~~~~~~-~tv~~nl~~~  109 (252)
T PRK14255         84 LRKQVGMVFQQPNPFP-FSIYENVIYG  109 (252)
T ss_pred             hcCeEEEEECCCccCC-CcHHHHHHHH
Confidence            4668999999998887 6999999875

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=4.3e-25  Score=165.63  Aligned_cols=96  Identities=23%  Similarity=0.390  Sum_probs=85.2

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCCh------h
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLNK------R   88 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~------~   88 (121)
                      ..+++++++++|+++.+|+++||+|++|++++|+|+||||||||+++|+|+.+     |++|+|.++|.++..      .
T Consensus        38 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~  117 (286)
T PRK14275         38 PHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVL  117 (286)
T ss_pred             eEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHH
Confidence            46899999999988889999999999999999999999999999999999864     489999999988631      3


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +++.++|++|++.+++. |++||+.++.
T Consensus       118 ~~~~i~~v~q~~~l~~~-tv~enl~~~~  144 (286)
T PRK14275        118 LRKKIGMVFQKPNPFPK-SIFDNIAYGP  144 (286)
T ss_pred             hhhcEEEECCCCCCCcc-CHHHHHHhHH
Confidence            46689999999988875 9999998753

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.93  E-value=2e-25  Score=160.94  Aligned_cols=95  Identities=34%  Similarity=0.520  Sum_probs=84.6

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~   94 (121)
                      .++++++++.|++  +.+++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.++..    .+++.++
T Consensus         2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   81 (220)
T cd03245           2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG   81 (220)
T ss_pred             eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence            3789999999975  579999999999999999999999999999999999999999999999988642    3456799


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |++|++.+++ .|++||+.+..
T Consensus        82 ~~~q~~~~~~-~tv~e~l~~~~  102 (220)
T cd03245          82 YVPQDVTLFY-GTLRDNITLGA  102 (220)
T ss_pred             EeCCCCcccc-chHHHHhhcCC
Confidence            9999998886 59999997753

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.6e-25  Score=165.85  Aligned_cols=95  Identities=23%  Similarity=0.339  Sum_probs=83.0

Q ss_pred             EEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC------hhhcccEE
Q psy16345         22 LVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN------KRWKRKIC   94 (121)
Q Consensus        22 i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~------~~~~~~i~   94 (121)
                      ++++|+++.|+ .+++++++||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|.++.      ..+++.++
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   81 (275)
T PRK13639          2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG   81 (275)
T ss_pred             EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence            78999999996 467999999999999999999999999999999999999999999999999873      13467899


Q ss_pred             EEeeCCC-CCCCCCHHHHHhhcc
Q psy16345         95 YVLQQDI-FFPELTLRQTLEVSI  116 (121)
Q Consensus        95 ~v~Q~~~-l~~~ltv~e~l~~~~  116 (121)
                      |++|++. .+...|++||+.++.
T Consensus        82 ~v~q~~~~~~~~~tv~e~i~~~~  104 (275)
T PRK13639         82 IVFQNPDDQLFAPTVEEDVAFGP  104 (275)
T ss_pred             EEeeChhhhhccccHHHHHHHHH
Confidence            9999973 233469999998753

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.93  E-value=2.3e-26  Score=164.25  Aligned_cols=96  Identities=27%  Similarity=0.382  Sum_probs=88.7

Q ss_pred             EEEEeeeEEEcCCcc-eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEE
Q psy16345         21 ELVFSGLSVTLDKRP-ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYV   96 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~-~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v   96 (121)
                      |+++.+++++|+..+ +++||||++++|+++||+|||||||||+||+|++++.|++|.|.++|.+..+   ..+++||.+
T Consensus         1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl   80 (245)
T COG4555           1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL   80 (245)
T ss_pred             CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence            478999999999865 9999999999999999999999999999999999999999999999988753   568899999


Q ss_pred             eeCCCCCCCCCHHHHHhhcc
Q psy16345         97 LQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +.+..++..||++||+.|..
T Consensus        81 ~~e~glY~RlT~rEnl~~Fa  100 (245)
T COG4555          81 FGERGLYARLTARENLKYFA  100 (245)
T ss_pred             cCCcChhhhhhHHHHHHHHH
Confidence            98888999999999998754

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.93  E-value=1e-25  Score=167.55  Aligned_cols=93  Identities=26%  Similarity=0.417  Sum_probs=84.5

Q ss_pred             EEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h----hcccEE
Q psy16345         23 VFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R----WKRKIC   94 (121)
Q Consensus        23 ~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~----~~~~i~   94 (121)
                      .++++++.|+++++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..    .    .+++++
T Consensus        26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~  105 (269)
T cd03294          26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS  105 (269)
T ss_pred             hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence            56799999999999999999999999999999999999999999999999999999999988742    1    235799


Q ss_pred             EEeeCCCCCCCCCHHHHHhhc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      |++|++.+++.+|++||+.+.
T Consensus       106 ~v~q~~~~~~~~tv~e~l~~~  126 (269)
T cd03294         106 MVFQSFALLPHRTVLENVAFG  126 (269)
T ss_pred             EEecCcccCCCCcHHHHHHHH
Confidence            999999999889999999875

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.93  E-value=2.8e-25  Score=159.11  Aligned_cols=94  Identities=29%  Similarity=0.465  Sum_probs=84.6

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~   94 (121)
                      .+++++++++|++  +.+++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..    .+++.++
T Consensus         6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   85 (207)
T cd03369           6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLT   85 (207)
T ss_pred             eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence            5899999999975  479999999999999999999999999999999999999999999999998742    3567899


Q ss_pred             EEeeCCCCCCCCCHHHHHhhc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      |++|++.+++. |+++|+.+.
T Consensus        86 ~v~q~~~~~~~-tv~~~l~~~  105 (207)
T cd03369          86 IIPQDPTLFSG-TIRSNLDPF  105 (207)
T ss_pred             EEecCCcccCc-cHHHHhccc
Confidence            99999988875 999999754

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.93  E-value=3.2e-25  Score=164.66  Aligned_cols=95  Identities=27%  Similarity=0.396  Sum_probs=83.4

Q ss_pred             EEEEeeeEEEcCC---------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----
Q psy16345         21 ELVFSGLSVTLDK---------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----   87 (121)
Q Consensus        21 ~i~~~~l~~~~~~---------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----   87 (121)
                      +|+++|++++|+.         +++|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.++..    
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~   83 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS   83 (267)
T ss_pred             eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence            5899999999962         469999999999999999999999999999999999999999999999988752    


Q ss_pred             hhcccEEEEeeCCC--CCCCCCHHHHHhhc
Q psy16345         88 RWKRKICYVLQQDI--FFPELTLRQTLEVS  115 (121)
Q Consensus        88 ~~~~~i~~v~Q~~~--l~~~ltv~e~l~~~  115 (121)
                      .+++.++|++|++.  +++.+|+.+++.+.
T Consensus        84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~  113 (267)
T PRK15112         84 YRSQRIRMIFQDPSTSLNPRQRISQILDFP  113 (267)
T ss_pred             hHhccEEEEecCchhhcCcchhHHHHHHHH
Confidence            23457999999975  56778999998753

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=4.1e-25  Score=162.32  Aligned_cols=96  Identities=21%  Similarity=0.391  Sum_probs=84.3

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC---CCC--CccEEEECCEeCCh------h
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR---VKL--DSGVIRLNKERLNK------R   88 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl---~~~--~~G~i~~~g~~~~~------~   88 (121)
                      .+++++|+++.|+++++|+++||++++|++++|+|+||||||||+++|+|+   .+|  ++|+|.++|.++..      .
T Consensus         2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   81 (250)
T PRK14245          2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE   81 (250)
T ss_pred             cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence            368999999999888899999999999999999999999999999999997   454  58999999998742      3


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +++.++|++|++.+++ .|++||+.++.
T Consensus        82 ~~~~i~~v~q~~~~~~-~tv~~nl~~~~  108 (250)
T PRK14245         82 LRKNVGMVFQRPNPFP-KSIFENVAYGL  108 (250)
T ss_pred             HhhheEEEecCCccCc-ccHHHHHHHHH
Confidence            4667999999998887 59999998753

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.93  E-value=2.2e-25  Score=160.82  Aligned_cols=93  Identities=31%  Similarity=0.540  Sum_probs=83.7

Q ss_pred             EEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345         22 LVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY   95 (121)
Q Consensus        22 i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~   95 (121)
                      ++++|++++|+.  +++++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..    .+++.++|
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   82 (221)
T cd03244           3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI   82 (221)
T ss_pred             EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence            789999999964  479999999999999999999999999999999999999999999999998742    45678999


Q ss_pred             EeeCCCCCCCCCHHHHHhhc
Q psy16345         96 VLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ++|++.+++ .|++||+.+.
T Consensus        83 ~~q~~~l~~-~tv~enl~~~  101 (221)
T cd03244          83 IPQDPVLFS-GTIRSNLDPF  101 (221)
T ss_pred             ECCCCcccc-chHHHHhCcC
Confidence            999998876 4999998754

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=9.8e-26  Score=179.78  Aligned_cols=101  Identities=35%  Similarity=0.613  Sum_probs=92.2

Q ss_pred             ccEEEEeeeEEEcCCc-ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345         19 PLELVFSGLSVTLDKR-PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI   93 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~~-~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i   93 (121)
                      +..++.+++++.|++. ++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.+..    ..|++++
T Consensus       318 ~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i  397 (559)
T COG4988         318 PIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI  397 (559)
T ss_pred             CceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe
Confidence            3456677999999764 9999999999999999999999999999999999999999999999998875    3689999


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhcccCcC
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSIADED  120 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~  120 (121)
                      +||+|+|.+|+. |++||+.++.++.+
T Consensus       398 ~~v~Q~p~lf~g-TireNi~l~~~~~s  423 (559)
T COG4988         398 SWVSQNPYLFAG-TIRENILLARPDAS  423 (559)
T ss_pred             eeeCCCCccccc-cHHHHhhccCCcCC
Confidence            999999999988 99999999987654

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.93  E-value=2.5e-25  Score=160.96  Aligned_cols=95  Identities=35%  Similarity=0.444  Sum_probs=82.0

Q ss_pred             EEEEeeeEEEcCC-------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEEC--CE--eCCh--
Q psy16345         21 ELVFSGLSVTLDK-------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN--KE--RLNK--   87 (121)
Q Consensus        21 ~i~~~~l~~~~~~-------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~--g~--~~~~--   87 (121)
                      +++++|++++|+.       +.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++  |.  ++..  
T Consensus         1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~   80 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS   80 (224)
T ss_pred             CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence            3789999999952       479999999999999999999999999999999999999999999998  42  3321  


Q ss_pred             -----h-hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         88 -----R-WKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        88 -----~-~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                           . +++.++|++|++.+++.+|++||+.+.
T Consensus        81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~  114 (224)
T TIGR02324        81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEP  114 (224)
T ss_pred             HHHHHHHHhcceEEEecccccCCCccHHHHHHHH
Confidence                 1 235799999999999999999999764

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.93  E-value=4.1e-25  Score=161.25  Aligned_cols=94  Identities=36%  Similarity=0.561  Sum_probs=84.9

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ   99 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~   99 (121)
                      |++++++++|+++ +++++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++..  ..++.++|++|+
T Consensus         1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~   79 (235)
T cd03299           1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN   79 (235)
T ss_pred             CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence            4689999999764 8999999999999999999999999999999999999999999999998753  345689999999


Q ss_pred             CCCCCCCCHHHHHhhcc
Q psy16345        100 DIFFPELTLRQTLEVSI  116 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~~  116 (121)
                      +.+++.+|+.||+.+..
T Consensus        80 ~~~~~~~t~~e~l~~~~   96 (235)
T cd03299          80 YALFPHMTVYKNIAYGL   96 (235)
T ss_pred             CccCCCccHHHHHHHHH
Confidence            99998899999998753

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=4.2e-25  Score=162.18  Aligned_cols=95  Identities=25%  Similarity=0.435  Sum_probs=84.8

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCCh------h
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLNK------R   88 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~------~   88 (121)
                      ++++++|+++.|+++++++++||+|.+|++++|+|+||||||||+++|+|+..     |++|+|.++|.++..      .
T Consensus         2 ~~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~   81 (250)
T PRK14266          2 YRIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE   81 (250)
T ss_pred             cEEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence            46899999999988889999999999999999999999999999999999864     389999999988742      3


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +++.++|++|++.+++. |+++|+.++
T Consensus        82 ~~~~i~~~~q~~~~~~~-t~~~nl~~~  107 (250)
T PRK14266         82 LRKKVGMVFQKPNPFPK-SIFDNVAYG  107 (250)
T ss_pred             HhhheEEEecCCccCcc-hHHHHHHhH
Confidence            46789999999988875 999999865

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=5.5e-25  Score=161.33  Aligned_cols=96  Identities=29%  Similarity=0.432  Sum_probs=87.6

Q ss_pred             EEEEeeeEEEcCCc-ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-----hhhcccEE
Q psy16345         21 ELVFSGLSVTLDKR-PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-----KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~~-~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-----~~~~~~i~   94 (121)
                      ++++++++++|++. .+++++||++++|+.++|+|+||||||||+++|+|+++|++|.|.++|.++.     ..+++++|
T Consensus         3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG   82 (235)
T COG1122           3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG   82 (235)
T ss_pred             eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence            58999999999775 8999999999999999999999999999999999999999999999999865     26788999


Q ss_pred             EEeeCC--CCCCCCCHHHHHhhccc
Q psy16345         95 YVLQQD--IFFPELTLRQTLEVSIA  117 (121)
Q Consensus        95 ~v~Q~~--~l~~~ltv~e~l~~~~~  117 (121)
                      ||||+|  ++|.. ||++.++|+..
T Consensus        83 ~VfQnpd~q~~~~-tV~~evafg~~  106 (235)
T COG1122          83 LVFQNPDDQLFGP-TVEDEVAFGLE  106 (235)
T ss_pred             EEEECcccccccC-cHHHHHhhchh
Confidence            999998  46654 99999999875

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.93  E-value=2.7e-25  Score=161.77  Aligned_cols=94  Identities=31%  Similarity=0.512  Sum_probs=84.2

Q ss_pred             EEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEE
Q psy16345         22 LVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYV   96 (121)
Q Consensus        22 i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v   96 (121)
                      ++++|++++|+ ++.+++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..    .+++.++|+
T Consensus         1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~   80 (236)
T cd03253           1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV   80 (236)
T ss_pred             CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence            46899999995 5779999999999999999999999999999999999999999999999988742    456679999


Q ss_pred             eeCCCCCCCCCHHHHHhhcc
Q psy16345         97 LQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +|++.+++ .|++||+.+..
T Consensus        81 ~q~~~~~~-~tv~~nl~~~~   99 (236)
T cd03253          81 PQDTVLFN-DTIGYNIRYGR   99 (236)
T ss_pred             CCCChhhc-chHHHHHhhcC
Confidence            99998886 59999998764

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.93  E-value=2.6e-25  Score=158.93  Aligned_cols=85  Identities=33%  Similarity=0.464  Sum_probs=78.3

Q ss_pred             EEEeeeEEEcCCc-----ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEE
Q psy16345         22 LVFSGLSVTLDKR-----PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYV   96 (121)
Q Consensus        22 i~~~~l~~~~~~~-----~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v   96 (121)
                      ++++|++++|+++     ++|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|         +++|+
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g---------~i~~~   71 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---------SIAYV   71 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC---------EEEEE
Confidence            4689999999763     799999999999999999999999999999999999999999999997         59999


Q ss_pred             eeCCCCCCCCCHHHHHhhcc
Q psy16345         97 LQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +|++.+++ .|++||+.+..
T Consensus        72 ~q~~~l~~-~t~~enl~~~~   90 (204)
T cd03250          72 SQEPWIQN-GTIRENILFGK   90 (204)
T ss_pred             ecCchhcc-CcHHHHhccCC
Confidence            99999885 59999998864

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.93  E-value=3.4e-25  Score=164.27  Aligned_cols=95  Identities=25%  Similarity=0.399  Sum_probs=84.8

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCC------hhh
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLN------KRW   89 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~------~~~   89 (121)
                      +|+++|+++.|+++++|+++||+|++|++++|+|+||||||||+|+|+|+++     |++|+|.++|.++.      ..+
T Consensus        10 ~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   89 (264)
T PRK14243         10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEV   89 (264)
T ss_pred             EEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHH
Confidence            5999999999988889999999999999999999999999999999999976     37899999998863      234


Q ss_pred             cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         90 KRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.++|++|++.+++. |++||+.++.
T Consensus        90 ~~~i~~v~q~~~~~~~-tv~enl~~~~  115 (264)
T PRK14243         90 RRRIGMVFQKPNPFPK-SIYDNIAYGA  115 (264)
T ss_pred             hhhEEEEccCCccccc-cHHHHHHhhh
Confidence            6679999999988874 9999998753

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.93  E-value=2.4e-25  Score=179.35  Aligned_cols=96  Identities=30%  Similarity=0.520  Sum_probs=88.6

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~   94 (121)
                      .++++|++++|.+  +++|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.    +.++++++
T Consensus       330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~  409 (571)
T TIGR02203       330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA  409 (571)
T ss_pred             eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce
Confidence            5999999999964  67999999999999999999999999999999999999999999999999875    35788899


Q ss_pred             EEeeCCCCCCCCCHHHHHhhccc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      |++|++.+|.. |++||+.++.+
T Consensus       410 ~v~Q~~~lf~~-Ti~~Ni~~~~~  431 (571)
T TIGR02203       410 LVSQDVVLFND-TIANNIAYGRT  431 (571)
T ss_pred             EEccCcccccc-cHHHHHhcCCC
Confidence            99999999976 99999998864

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=5.9e-25  Score=164.06  Aligned_cols=96  Identities=25%  Similarity=0.355  Sum_probs=85.2

Q ss_pred             EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccE
Q psy16345         21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i   93 (121)
                      +++++|++++|++   ..+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..    .+++.+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i   83 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI   83 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence            5899999999974   359999999999999999999999999999999999999999999999998752    456789


Q ss_pred             EEEeeCCC-CCCCCCHHHHHhhcc
Q psy16345         94 CYVLQQDI-FFPELTLRQTLEVSI  116 (121)
Q Consensus        94 ~~v~Q~~~-l~~~ltv~e~l~~~~  116 (121)
                      +|++|++. +++..|+.||+.++.
T Consensus        84 ~~v~q~~~~~~~~~tv~eni~~~~  107 (277)
T PRK13642         84 GMVFQNPDNQFVGATVEDDVAFGM  107 (277)
T ss_pred             EEEEECHHHhhccCCHHHHHHhhH
Confidence            99999974 566779999998653

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=5.2e-25  Score=165.16  Aligned_cols=95  Identities=22%  Similarity=0.393  Sum_probs=82.8

Q ss_pred             EEEEeeeEEEcCCc-----ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---------
Q psy16345         21 ELVFSGLSVTLDKR-----PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---------   86 (121)
Q Consensus        21 ~i~~~~l~~~~~~~-----~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~---------   86 (121)
                      .|+++|++++|+++     .+|+++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++.         
T Consensus         6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   85 (289)
T PRK13645          6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV   85 (289)
T ss_pred             eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence            48999999999764     4999999999999999999999999999999999999999999999998763         


Q ss_pred             hhhcccEEEEeeCCC--CCCCCCHHHHHhhcc
Q psy16345         87 KRWKRKICYVLQQDI--FFPELTLRQTLEVSI  116 (121)
Q Consensus        87 ~~~~~~i~~v~Q~~~--l~~~ltv~e~l~~~~  116 (121)
                      ..+++.++|++|++.  +++ .|++||+.++.
T Consensus        86 ~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~  116 (289)
T PRK13645         86 KRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGP  116 (289)
T ss_pred             HHHhccEEEEEeCcchhhhh-hHHHHHHHHHH
Confidence            134667999999973  444 59999998753

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.93  E-value=2.1e-25  Score=162.61  Aligned_cols=94  Identities=29%  Similarity=0.468  Sum_probs=83.2

Q ss_pred             EEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345         22 LVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC   94 (121)
Q Consensus        22 i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~   94 (121)
                      ++++|+++.|++   +++++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..    .+++.++
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   80 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG   80 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence            468999999964   469999999999999999999999999999999999999999999999988642    3456799


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |++|++.+++ .|++||+.+..
T Consensus        81 ~~~q~~~~~~-~tv~e~l~~~~  101 (238)
T cd03249          81 LVSQEPVLFD-GTIAENIRYGK  101 (238)
T ss_pred             EECCchhhhh-hhHHHHhhccC
Confidence            9999998876 59999998754

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.92  E-value=2e-25  Score=161.65  Aligned_cols=96  Identities=25%  Similarity=0.446  Sum_probs=85.2

Q ss_pred             cEEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhccc
Q psy16345         20 LELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRK   92 (121)
Q Consensus        20 ~~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~   92 (121)
                      .+++++++++.|++   .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..    .+++.
T Consensus        10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   89 (226)
T cd03248          10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSK   89 (226)
T ss_pred             ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhh
Confidence            35999999999964   369999999999999999999999999999999999999999999999987642    34567


Q ss_pred             EEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         93 ICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        93 i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++|++|++.+++ .|++||+.++.
T Consensus        90 i~~~~q~~~l~~-~tv~~nl~~~~  112 (226)
T cd03248          90 VSLVGQEPVLFA-RSLQDNIAYGL  112 (226)
T ss_pred             EEEEecccHHHh-hhHHHHhcccc
Confidence            999999998876 59999998754

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.92  E-value=6.7e-25  Score=161.96  Aligned_cols=94  Identities=30%  Similarity=0.401  Sum_probs=83.2

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe-----CCh----h---
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER-----LNK----R---   88 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~-----~~~----~---   88 (121)
                      +++++|+++.|+++.+|+++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++|++     +..    .   
T Consensus         6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~   85 (258)
T PRK11701          6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRR   85 (258)
T ss_pred             eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHH
Confidence            5999999999988889999999999999999999999999999999999999999999999987     531    1   


Q ss_pred             -hcccEEEEeeCCC--CCCCCCHHHHHhh
Q psy16345         89 -WKRKICYVLQQDI--FFPELTLRQTLEV  114 (121)
Q Consensus        89 -~~~~i~~v~Q~~~--l~~~ltv~e~l~~  114 (121)
                       +++.++|++|++.  +++.+|+.+|+.+
T Consensus        86 ~~~~~i~~v~q~~~~~~~~~~~~~~~i~~  114 (258)
T PRK11701         86 LLRTEWGFVHQHPRDGLRMQVSAGGNIGE  114 (258)
T ss_pred             HhhcceEEEeeCcccccCccccHHHHHHH
Confidence             2457999999974  6677789988864

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=9.1e-25  Score=165.21  Aligned_cols=97  Identities=27%  Similarity=0.471  Sum_probs=86.4

Q ss_pred             ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCCh------
Q psy16345         19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLNK------   87 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~------   87 (121)
                      ..+|+++|+++.|+++.+|+++||+|.+|++++|+|+||||||||+++|+|+++     |++|+|.++|.++..      
T Consensus        43 ~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~  122 (305)
T PRK14264         43 DAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLV  122 (305)
T ss_pred             CceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHH
Confidence            346999999999988899999999999999999999999999999999999986     689999999988642      


Q ss_pred             hhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         88 RWKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        88 ~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      .+++.++|++|++.+++. |++||+.++.
T Consensus       123 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~  150 (305)
T PRK14264        123 ELRKRVGMVFQSPNPFPK-SIRENISYGP  150 (305)
T ss_pred             HHhhceEEEccCCccccc-cHHHHHHhHH
Confidence            345689999999988875 9999998753

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=7.1e-25  Score=162.47  Aligned_cols=97  Identities=26%  Similarity=0.449  Sum_probs=85.5

Q ss_pred             ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCC-------
Q psy16345         19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLN-------   86 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~-------   86 (121)
                      ..+|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.++|.++.       
T Consensus        14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~   93 (265)
T PRK14252         14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD   93 (265)
T ss_pred             CceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence            3469999999999888999999999999999999999999999999999999875     7899999987652       


Q ss_pred             -hhhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         87 -KRWKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        87 -~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                       ..+++.++|++|++.+++. |++||+.++.
T Consensus        94 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~  123 (265)
T PRK14252         94 PIEVRMRISMVFQKPNPFPK-SIFENVAYGL  123 (265)
T ss_pred             HHHHhccEEEEccCCcCCcc-hHHHHHHhHH
Confidence             1346789999999998886 9999998753

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=9.9e-25  Score=161.72  Aligned_cols=97  Identities=22%  Similarity=0.330  Sum_probs=86.3

Q ss_pred             ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCCh------
Q psy16345         19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLNK------   87 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~~------   87 (121)
                      +..+.++.++++|+++++|+++||++++|++++|+|+||||||||+++|+|+++|     ++|+|.++|.++..      
T Consensus         6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~   85 (261)
T PRK14263          6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV   85 (261)
T ss_pred             CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence            3458899999999988999999999999999999999999999999999999986     79999999998731      


Q ss_pred             hhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         88 RWKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        88 ~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      .+++.++|++|++.++ .+|++||+.++.
T Consensus        86 ~~~~~i~~v~q~~~~~-~~tv~enl~~~~  113 (261)
T PRK14263         86 VVRRYIGMVFQQPNPF-SMSIFDNVAFGL  113 (261)
T ss_pred             hhhhceEEEecCCccc-cccHHHHHHHHH
Confidence            3466799999999887 589999998763

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.92  E-value=6.7e-25  Score=174.90  Aligned_cols=95  Identities=25%  Similarity=0.369  Sum_probs=86.2

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC--CccEEEECCEeCCh-----hhcccEE
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL--DSGVIRLNKERLNK-----RWKRKIC   94 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~~-----~~~~~i~   94 (121)
                      ++++|+++.|+++++|+++||++++|++++|+||||||||||+|+|+|+++|  ++|+|.++|+++..     .+++.++
T Consensus         2 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   81 (500)
T TIGR02633         2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV   81 (500)
T ss_pred             EEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEE
Confidence            7899999999888899999999999999999999999999999999999986  79999999998752     2346799


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ||+|++.+++.+|++||+.++.
T Consensus        82 ~v~q~~~~~~~~tv~~~l~~~~  103 (500)
T TIGR02633        82 IIHQELTLVPELSVAENIFLGN  103 (500)
T ss_pred             EEeeccccCCCCcHHHHHHhhc
Confidence            9999999999999999998753

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=1.1e-24  Score=166.31  Aligned_cols=94  Identities=31%  Similarity=0.320  Sum_probs=84.3

Q ss_pred             EEEEeeeEEEcCC----------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---
Q psy16345         21 ELVFSGLSVTLDK----------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---   87 (121)
Q Consensus        21 ~i~~~~l~~~~~~----------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---   87 (121)
                      +|+++||++.|+.          ..+|++|||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..   
T Consensus         5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~   84 (327)
T PRK11308          5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP   84 (327)
T ss_pred             eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence            5999999999952          469999999999999999999999999999999999999999999999998742   


Q ss_pred             ----hhcccEEEEeeCC--CCCCCCCHHHHHhh
Q psy16345         88 ----RWKRKICYVLQQD--IFFPELTLRQTLEV  114 (121)
Q Consensus        88 ----~~~~~i~~v~Q~~--~l~~~ltv~e~l~~  114 (121)
                          .++++++||||++  .+++.+++.+++..
T Consensus        85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~  117 (327)
T PRK11308         85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEE  117 (327)
T ss_pred             HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHH
Confidence                3466899999998  58888999999864

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1e-24  Score=161.45  Aligned_cols=94  Identities=28%  Similarity=0.558  Sum_probs=84.8

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC-----ccEEEECCEeCC------hhh
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD-----SGVIRLNKERLN------KRW   89 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~-----~G~i~~~g~~~~------~~~   89 (121)
                      +|+++|+++.|+++.+|+++||++++|++++|+|+||||||||+++|+|+++|+     +|+|.++|+++.      ..+
T Consensus         7 ~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~   86 (261)
T PRK14258          7 AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRL   86 (261)
T ss_pred             eEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHh
Confidence            589999999998878999999999999999999999999999999999999985     799999998863      134


Q ss_pred             cccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         90 KRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ++.++|++|++.+++ +|++||+.+.
T Consensus        87 ~~~i~~~~q~~~l~~-~tv~enl~~~  111 (261)
T PRK14258         87 RRQVSMVHPKPNLFP-MSVYDNVAYG  111 (261)
T ss_pred             hccEEEEecCCccCc-ccHHHHHHHH
Confidence            667999999998887 7999999864

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.92  E-value=6.8e-25  Score=168.92  Aligned_cols=89  Identities=36%  Similarity=0.505  Sum_probs=80.6

Q ss_pred             eeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hhcccEEEEe
Q psy16345         26 GLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RWKRKICYVL   97 (121)
Q Consensus        26 ~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~~~~i~~v~   97 (121)
                      |++++|+++. + ++||++++|++++|+||||||||||||+|+|+++|++|+|.++|+++..        ..++.++|++
T Consensus         4 ~l~~~~~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~   81 (354)
T TIGR02142         4 RFSKRLGDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF   81 (354)
T ss_pred             EEEEEECCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence            7899998765 4 9999999999999999999999999999999999999999999988741        2456799999


Q ss_pred             eCCCCCCCCCHHHHHhhcc
Q psy16345         98 QQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        98 Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |++.+|+++|++||+.++.
T Consensus        82 q~~~l~~~~tv~enl~~~~  100 (354)
T TIGR02142        82 QEARLFPHLSVRGNLRYGM  100 (354)
T ss_pred             cCCccCCCCcHHHHHHHHh
Confidence            9999999999999999864

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=9.1e-25  Score=160.58  Aligned_cols=95  Identities=23%  Similarity=0.407  Sum_probs=84.1

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCCh------h
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLNK------R   88 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~------~   88 (121)
                      +.-+++|+++.|+++++|+++||+|.+|++++|+|+||||||||+++|+|+.+     |++|+|.++|+++..      .
T Consensus         4 ~~~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   83 (251)
T PRK14244          4 IHASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL   83 (251)
T ss_pred             eEEEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence            34678999999988889999999999999999999999999999999999976     469999999988632      3


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +++.++|++|++.+++. |+++|+.+.
T Consensus        84 ~~~~i~~v~q~~~~~~~-tv~~ni~~~  109 (251)
T PRK14244         84 LRAKVGMVFQKPNPFPK-SIYDNVAYG  109 (251)
T ss_pred             HhhhEEEEecCcccccC-CHHHHHHHH
Confidence            46689999999988876 999999875

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=9.3e-25  Score=163.24  Aligned_cols=95  Identities=19%  Similarity=0.286  Sum_probs=83.7

Q ss_pred             EEEEeeeEEEcCC------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hh
Q psy16345         21 ELVFSGLSVTLDK------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RW   89 (121)
Q Consensus        21 ~i~~~~l~~~~~~------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~   89 (121)
                      +++++|++++|++      +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..     .+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~   83 (280)
T PRK13633          4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI   83 (280)
T ss_pred             eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence            5899999999963      469999999999999999999999999999999999999999999999998742     34


Q ss_pred             cccEEEEeeCCC--CCCCCCHHHHHhhcc
Q psy16345         90 KRKICYVLQQDI--FFPELTLRQTLEVSI  116 (121)
Q Consensus        90 ~~~i~~v~Q~~~--l~~~ltv~e~l~~~~  116 (121)
                      ++.++|++|++.  ++ ..++.+|+.++.
T Consensus        84 ~~~i~~v~q~~~~~~~-~~~v~~~l~~~~  111 (280)
T PRK13633         84 RNKAGMVFQNPDNQIV-ATIVEEDVAFGP  111 (280)
T ss_pred             hhheEEEecChhhhhc-cccHHHHHHhhH
Confidence            678999999974  44 458999998763

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=7.4e-25  Score=162.10  Aligned_cols=96  Identities=25%  Similarity=0.481  Sum_probs=84.7

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECC------EeCC----hhhc
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNK------ERLN----KRWK   90 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g------~~~~----~~~~   90 (121)
                      ++++++++++|+++.+|+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.++|      .++.    ..++
T Consensus        10 ~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~   89 (257)
T PRK14246         10 VFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLR   89 (257)
T ss_pred             heeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHh
Confidence            49999999999999999999999999999999999999999999999999999987776665      4432    1346


Q ss_pred             ccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         91 RKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        91 ~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +.++|++|++.+++.+|+++|+.++.
T Consensus        90 ~~i~~~~q~~~~~~~~tv~~nl~~~~  115 (257)
T PRK14246         90 KEVGMVFQQPNPFPHLSIYDNIAYPL  115 (257)
T ss_pred             cceEEEccCCccCCCCcHHHHHHHHH
Confidence            78999999999998899999998753

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.92  E-value=1.3e-24  Score=161.59  Aligned_cols=94  Identities=35%  Similarity=0.513  Sum_probs=83.8

Q ss_pred             EEEEeeeEEEcC---------CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----
Q psy16345         21 ELVFSGLSVTLD---------KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----   87 (121)
Q Consensus        21 ~i~~~~l~~~~~---------~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----   87 (121)
                      +|+++|+++.|+         ++++++++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++..    
T Consensus         3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~   82 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA   82 (268)
T ss_pred             eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence            589999999997         4789999999999999999999999999999999999999999999999988742    


Q ss_pred             ---hhcccEEEEeeCC--CCCCCCCHHHHHhh
Q psy16345         88 ---RWKRKICYVLQQD--IFFPELTLRQTLEV  114 (121)
Q Consensus        88 ---~~~~~i~~v~Q~~--~l~~~ltv~e~l~~  114 (121)
                         .+++.++|++|++  .+++..|+.+|+.+
T Consensus        83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~  114 (268)
T PRK10419         83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIRE  114 (268)
T ss_pred             HHHHHHhcEEEEEcChhhccCCCCCHHHHHHH
Confidence               2466899999997  36677899999865

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.92  E-value=9.6e-25  Score=155.99  Aligned_cols=91  Identities=30%  Similarity=0.441  Sum_probs=81.6

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC--CCCCccEEEECCEeCCh----h-hcccEE
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR--VKLDSGVIRLNKERLNK----R-WKRKIC   94 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl--~~~~~G~i~~~g~~~~~----~-~~~~i~   94 (121)
                      ++++|+++.|+++.+++++||++.+|++++|+|+||||||||+++|+|+  .+|++|+|.++|.++..    . .+..++
T Consensus         1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (200)
T cd03217           1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIF   80 (200)
T ss_pred             CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEE
Confidence            4689999999888899999999999999999999999999999999999  47999999999998752    2 244699


Q ss_pred             EEeeCCCCCCCCCHHHHH
Q psy16345         95 YVLQQDIFFPELTLRQTL  112 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l  112 (121)
                      |++|++.+++.+++++++
T Consensus        81 ~v~q~~~~~~~~~~~~~l   98 (200)
T cd03217          81 LAFQYPPEIPGVKNADFL   98 (200)
T ss_pred             EeecChhhccCccHHHHH
Confidence            999999999888998876

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.92  E-value=4.6e-25  Score=181.74  Aligned_cols=97  Identities=24%  Similarity=0.489  Sum_probs=89.0

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~   94 (121)
                      .|+++|++|+|+.  +++|+++||++++|+.++|+|+||||||||+|+|+|+++|++|+|.++|.++.    ..+++.++
T Consensus       455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~  534 (694)
T TIGR01846       455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMG  534 (694)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCe
Confidence            5999999999953  56999999999999999999999999999999999999999999999999986    26788999


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcccC
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSIAD  118 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~~~  118 (121)
                      ||+|++.+|+. |++||+.++.++
T Consensus       535 ~v~q~~~lf~~-ti~eNi~~~~~~  557 (694)
T TIGR01846       535 VVLQENVLFSR-SIRDNIALCNPG  557 (694)
T ss_pred             EEccCCeehhh-hHHHHHhcCCCC
Confidence            99999999976 999999987654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.92  E-value=8.4e-25  Score=176.86  Aligned_cols=97  Identities=29%  Similarity=0.563  Sum_probs=88.6

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~   94 (121)
                      .+++++++++|+.  +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.    ..+++.++
T Consensus       313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~  392 (569)
T PRK10789        313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA  392 (569)
T ss_pred             cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheE
Confidence            4899999999964  57999999999999999999999999999999999999999999999999875    25678899


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcccC
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSIAD  118 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~~~  118 (121)
                      |++|++.+|+. |++||+.++.++
T Consensus       393 ~v~q~~~lf~~-ti~~Ni~~~~~~  415 (569)
T PRK10789        393 VVSQTPFLFSD-TVANNIALGRPD  415 (569)
T ss_pred             EEccCCeeccc-cHHHHHhcCCCC
Confidence            99999999976 999999987644

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.92  E-value=7.3e-25  Score=174.43  Aligned_cols=93  Identities=27%  Similarity=0.384  Sum_probs=84.4

Q ss_pred             EeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEEEee
Q psy16345         24 FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICYVLQ   98 (121)
Q Consensus        24 ~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~v~Q   98 (121)
                      ++|++++|+++++|+++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|+++..     .+++.++|++|
T Consensus         1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q   80 (491)
T PRK10982          1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQ   80 (491)
T ss_pred             CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence            3689999988889999999999999999999999999999999999999999999999998742     24567999999


Q ss_pred             CCCCCCCCCHHHHHhhcc
Q psy16345         99 QDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.+++.+|++||+.++.
T Consensus        81 ~~~~~~~~tv~~~l~~~~   98 (491)
T PRK10982         81 ELNLVLQRSVMDNMWLGR   98 (491)
T ss_pred             ccccccCCCHHHHhhccc
Confidence            998888999999998753

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.92  E-value=1.1e-24  Score=151.90  Aligned_cols=85  Identities=34%  Similarity=0.490  Sum_probs=77.1

Q ss_pred             EEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345         22 LVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD  100 (121)
Q Consensus        22 i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~  100 (121)
                      +++++++++|+ ++++|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.+++.       ++++|++|++
T Consensus         1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-------~~i~~~~q~~   73 (166)
T cd03223           1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-------EDLLFLPQRP   73 (166)
T ss_pred             CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-------ceEEEECCCC
Confidence            46899999995 468999999999999999999999999999999999999999999999863       5799999998


Q ss_pred             CCCCCCCHHHHHhh
Q psy16345        101 IFFPELTLRQTLEV  114 (121)
Q Consensus       101 ~l~~~ltv~e~l~~  114 (121)
                      .++ ..|++||+.+
T Consensus        74 ~~~-~~tv~~nl~~   86 (166)
T cd03223          74 YLP-LGTLREQLIY   86 (166)
T ss_pred             ccc-cccHHHHhhc
Confidence            766 5699999976

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.92  E-value=1.6e-24  Score=174.37  Aligned_cols=96  Identities=29%  Similarity=0.489  Sum_probs=87.7

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~   94 (121)
                      .++++|++++|++  +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..    .+++.++
T Consensus       316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~  395 (544)
T TIGR01842       316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIG  395 (544)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheE
Confidence            5999999999953  589999999999999999999999999999999999999999999999998752    5678899


Q ss_pred             EEeeCCCCCCCCCHHHHHhhccc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      ||+|++.+|+. |++||+.++.+
T Consensus       396 ~v~q~~~lf~~-ti~~Ni~~~~~  417 (544)
T TIGR01842       396 YLPQDVELFPG-TVAENIARFGE  417 (544)
T ss_pred             EecCCcccccc-cHHHHHhccCC
Confidence            99999999986 99999986543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.92  E-value=1.3e-24  Score=160.61  Aligned_cols=93  Identities=27%  Similarity=0.525  Sum_probs=84.3

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~   94 (121)
                      .|++++++++|+.  +.+++++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++..    .+++.++
T Consensus        19 ~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~   98 (257)
T cd03288          19 EIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLS   98 (257)
T ss_pred             eEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEE
Confidence            5999999999976  579999999999999999999999999999999999999999999999998752    4567899


Q ss_pred             EEeeCCCCCCCCCHHHHHhh
Q psy16345         95 YVLQQDIFFPELTLRQTLEV  114 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~  114 (121)
                      |++|++.+++. |+++|+..
T Consensus        99 ~v~q~~~l~~~-tv~~nl~~  117 (257)
T cd03288          99 IILQDPILFSG-SIRFNLDP  117 (257)
T ss_pred             EECCCCccccc-HHHHhcCc
Confidence            99999988875 99999864

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=4.4e-25  Score=157.38  Aligned_cols=96  Identities=39%  Similarity=0.606  Sum_probs=86.7

Q ss_pred             EEEEeeeEEEcCCcc--eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345         21 ELVFSGLSVTLDKRP--ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ   98 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~--~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q   98 (121)
                      ++.+.+++..|.+++  +|+|+|++|.+||.++++|||||||||||++++|+.+|+.|+|.++|+++... ...-|.|||
T Consensus         3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gP-gaergvVFQ   81 (259)
T COG4525           3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGP-GAERGVVFQ   81 (259)
T ss_pred             eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCC-CccceeEec
Confidence            467889999998866  99999999999999999999999999999999999999999999999988631 123489999


Q ss_pred             CCCCCCCCCHHHHHhhccc
Q psy16345         99 QDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~~~  117 (121)
                      ++.++|++++.||+.|++.
T Consensus        82 ~~~LlPWl~~~dNvafgL~  100 (259)
T COG4525          82 NEALLPWLNVIDNVAFGLQ  100 (259)
T ss_pred             cCccchhhHHHHHHHHHHH
Confidence            9999999999999999874

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=2.1e-26  Score=160.81  Aligned_cols=94  Identities=29%  Similarity=0.541  Sum_probs=86.5

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEEEe
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICYVL   97 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~v~   97 (121)
                      ++++++.+.-++..+|+++||.+.+||+++|+||||||||||+|+++-|+.|++|.++|.|++++    ..+|++++|+.
T Consensus         4 le~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~   83 (223)
T COG4619           4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCA   83 (223)
T ss_pred             hHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHH
Confidence            56677777677889999999999999999999999999999999999999999999999999987    36888999999


Q ss_pred             eCCCCCCCCCHHHHHhhcc
Q psy16345         98 QQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        98 Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |.|.||++ ||++|+.|..
T Consensus        84 Q~paLfg~-tVeDNlifP~  101 (223)
T COG4619          84 QTPALFGD-TVEDNLIFPW  101 (223)
T ss_pred             cCcccccc-chhhccccch
Confidence            99999998 9999999864

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.92  E-value=1.3e-24  Score=175.49  Aligned_cols=89  Identities=34%  Similarity=0.433  Sum_probs=82.5

Q ss_pred             cEEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345         20 LELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ   98 (121)
Q Consensus        20 ~~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q   98 (121)
                      .+|+++|+++.|+ ++++|+++||+|.+|++++|+||||||||||||+|+|+++|++|+|.+++       ...++||+|
T Consensus         5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-------~~~i~~v~Q   77 (556)
T PRK11819          5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-------GIKVGYLPQ   77 (556)
T ss_pred             EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-------CCEEEEEec
Confidence            4699999999998 78899999999999999999999999999999999999999999999874       246999999


Q ss_pred             CCCCCCCCCHHHHHhhc
Q psy16345         99 QDIFFPELTLRQTLEVS  115 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~  115 (121)
                      ++.+++.+|+.||+.++
T Consensus        78 ~~~~~~~~tv~e~l~~~   94 (556)
T PRK11819         78 EPQLDPEKTVRENVEEG   94 (556)
T ss_pred             CCCCCCCCcHHHHHHHh
Confidence            99999999999999865

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.92  E-value=9.4e-25  Score=177.16  Aligned_cols=97  Identities=26%  Similarity=0.420  Sum_probs=88.7

Q ss_pred             EEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEE
Q psy16345         21 ELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~   95 (121)
                      .++++|++++|++ +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.    ..+++.++|
T Consensus       334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~  413 (585)
T TIGR01192       334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIAT  413 (585)
T ss_pred             eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence            5999999999975 67999999999999999999999999999999999999999999999999875    257788999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcccC
Q psy16345         96 VLQQDIFFPELTLRQTLEVSIAD  118 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~~~  118 (121)
                      |+|++.+|+. |++||+.++.++
T Consensus       414 v~q~~~lf~~-ti~~Ni~~~~~~  435 (585)
T TIGR01192       414 VFQDAGLFNR-SIRENIRLGREG  435 (585)
T ss_pred             EccCCccCcc-cHHHHHhcCCCC
Confidence            9999999875 999999997643

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.92  E-value=2.3e-24  Score=158.92  Aligned_cols=94  Identities=22%  Similarity=0.361  Sum_probs=81.8

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC----CccEEEECCEeCCh--hhcccE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL----DSGVIRLNKERLNK--RWKRKI   93 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~----~~G~i~~~g~~~~~--~~~~~i   93 (121)
                      .+++++|++++| ++++|+++||++.+|++++|+|+||||||||+++|+|+++|    ++|+|.++|+++..  ..++.+
T Consensus         3 ~~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i   81 (254)
T PRK10418          3 QQIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI   81 (254)
T ss_pred             cEEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceE
Confidence            368999999999 67899999999999999999999999999999999999998    99999999998752  224579


Q ss_pred             EEEeeCCC--CCCCCCHHHHHhh
Q psy16345         94 CYVLQQDI--FFPELTLRQTLEV  114 (121)
Q Consensus        94 ~~v~Q~~~--l~~~ltv~e~l~~  114 (121)
                      +|++|++.  +.+.+|+.+++.+
T Consensus        82 ~~v~q~~~~~~~~~~~~~~~~~~  104 (254)
T PRK10418         82 ATIMQNPRSAFNPLHTMHTHARE  104 (254)
T ss_pred             EEEecCCccccCccccHHHHHHH
Confidence            99999974  4456788888754

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.92  E-value=3.9e-25  Score=156.05  Aligned_cols=94  Identities=30%  Similarity=0.493  Sum_probs=84.9

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ   99 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~   99 (121)
                      +.++++++.|+..+  -.++++|+.||++||+|||||||||||++|+|++.|.+|+|+++|++...  ...|-++++||+
T Consensus         2 l~L~~V~~~y~~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQE   79 (231)
T COG3840           2 LALDDVRFSYGHLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQE   79 (231)
T ss_pred             ccccceEEeeCcce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhc
Confidence            56789999997644  46788999999999999999999999999999999999999999999863  457789999999


Q ss_pred             CCCCCCCCHHHHHhhccc
Q psy16345        100 DIFFPELTLRQTLEVSIA  117 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~~~  117 (121)
                      .++|.++||.+|+.+|..
T Consensus        80 nNLFaHLtV~qNigLGl~   97 (231)
T COG3840          80 NNLFAHLTVAQNIGLGLS   97 (231)
T ss_pred             cccchhhhhhhhhcccCC
Confidence            999999999999999874

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.6e-24  Score=164.39  Aligned_cols=96  Identities=21%  Similarity=0.308  Sum_probs=85.4

Q ss_pred             cEEEEeeeEEEcC--CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCC------
Q psy16345         20 LELVFSGLSVTLD--KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLN------   86 (121)
Q Consensus        20 ~~i~~~~l~~~~~--~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~------   86 (121)
                      ..|+++|++++|.  .+++|+++||+|++|+++||+|+||||||||+++|+|+.+     |++|+|.++|.++.      
T Consensus        79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~  158 (329)
T PRK14257         79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS  158 (329)
T ss_pred             ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence            3699999999995  3579999999999999999999999999999999999986     57999999999985      


Q ss_pred             hhhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         87 KRWKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        87 ~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ..+++.++|+||++.+++ .|++||+.|+.
T Consensus       159 ~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~  187 (329)
T PRK14257        159 LELRTRIGMVFQKPTPFE-MSIFDNVAYGP  187 (329)
T ss_pred             HhhhccEEEEecCCccCC-CcHHHHHHhHH
Confidence            245778999999999886 69999999764

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.92  E-value=2.1e-24  Score=158.75  Aligned_cols=94  Identities=32%  Similarity=0.425  Sum_probs=81.4

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe-----CCh----h---
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER-----LNK----R---   88 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~-----~~~----~---   88 (121)
                      +++++|+++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+     +..    .   
T Consensus         3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   82 (253)
T TIGR02323         3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRR   82 (253)
T ss_pred             eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHH
Confidence            5899999999988889999999999999999999999999999999999999999999999876     421    1   


Q ss_pred             -hcccEEEEeeCCC--CCCCCCHHHHHhh
Q psy16345         89 -WKRKICYVLQQDI--FFPELTLRQTLEV  114 (121)
Q Consensus        89 -~~~~i~~v~Q~~~--l~~~ltv~e~l~~  114 (121)
                       +++.++|++|++.  +++.+++.+|+.+
T Consensus        83 ~~~~~i~~~~q~~~~~~~~~~~~~~~i~~  111 (253)
T TIGR02323        83 LMRTEWGFVHQNPRDGLRMRVSAGANIGE  111 (253)
T ss_pred             hhhcceEEEEeCcccccCccccHHHHHHH
Confidence             2356999999974  4556788888754

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.8e-24  Score=164.16  Aligned_cols=94  Identities=19%  Similarity=0.317  Sum_probs=82.1

Q ss_pred             EEEEeeeEEEc----CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC----CCccEEEECCEeCCh----h
Q psy16345         21 ELVFSGLSVTL----DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK----LDSGVIRLNKERLNK----R   88 (121)
Q Consensus        21 ~i~~~~l~~~~----~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~----~~~G~i~~~g~~~~~----~   88 (121)
                      +|+++|+++.|    +...+++++||+|.+||++||+|+||||||||+++|+|+++    +++|+|.++|+++..    .
T Consensus         3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~   82 (330)
T PRK15093          3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE   82 (330)
T ss_pred             eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence            58999999999    34679999999999999999999999999999999999986    588999999998742    1


Q ss_pred             ----hcccEEEEeeCCC--CCCCCCHHHHHhh
Q psy16345         89 ----WKRKICYVLQQDI--FFPELTLRQTLEV  114 (121)
Q Consensus        89 ----~~~~i~~v~Q~~~--l~~~ltv~e~l~~  114 (121)
                          +++.++||||++.  +++.+|+.+++.+
T Consensus        83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~  114 (330)
T PRK15093         83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQ  114 (330)
T ss_pred             HHHHhCCCEEEEecCcchhcCccccHHHHHHH
Confidence                2357999999986  6788899999875

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.92  E-value=1.7e-24  Score=155.72  Aligned_cols=88  Identities=35%  Similarity=0.541  Sum_probs=79.3

Q ss_pred             eeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hhcccEEEEe
Q psy16345         26 GLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RWKRKICYVL   97 (121)
Q Consensus        26 ~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~~~~i~~v~   97 (121)
                      +|+++|+++.+  ++||++++ ++++|+||||||||||+++|+|+++|++|+|.++|.++..        ..++.++|++
T Consensus         5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~   81 (214)
T cd03297           5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF   81 (214)
T ss_pred             eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEe
Confidence            89999998765  99999999 9999999999999999999999999999999999987631        2456799999


Q ss_pred             eCCCCCCCCCHHHHHhhcc
Q psy16345         98 QQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        98 Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |++.+++.+|+++|+.+..
T Consensus        82 q~~~~~~~~t~~~~l~~~~  100 (214)
T cd03297          82 QQYALFPHLNVRENLAFGL  100 (214)
T ss_pred             cCCccCCCCCHHHHHHHHH
Confidence            9999998899999998654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.92  E-value=1.3e-24  Score=162.53  Aligned_cols=92  Identities=23%  Similarity=0.520  Sum_probs=83.1

Q ss_pred             EEEEeeeEEEc--CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345         21 ELVFSGLSVTL--DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~--~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~   94 (121)
                      .|+++|++++|  +...+|+++||+|++||+++|+|+||||||||+++|+|+++ .+|+|+++|.++.    ..+++.++
T Consensus         2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~   80 (275)
T cd03289           2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG   80 (275)
T ss_pred             eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence            37899999999  45679999999999999999999999999999999999997 7899999999875    25677899


Q ss_pred             EEeeCCCCCCCCCHHHHHhh
Q psy16345         95 YVLQQDIFFPELTLRQTLEV  114 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~  114 (121)
                      |++|++.+|+. |+++|+..
T Consensus        81 ~v~q~~~lf~~-tv~~nl~~   99 (275)
T cd03289          81 VIPQKVFIFSG-TFRKNLDP   99 (275)
T ss_pred             EECCCcccchh-hHHHHhhh
Confidence            99999999975 99999963

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=4.5e-25  Score=158.73  Aligned_cols=97  Identities=33%  Similarity=0.506  Sum_probs=88.7

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICYV   96 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~v   96 (121)
                      +|+.+|++++..++.+++++||++++||+.+|+||||||||||||.|+|.+.|++|++.++|.+++    .++.++.+.+
T Consensus         1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl   80 (259)
T COG4559           1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL   80 (259)
T ss_pred             CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence            488999999999999999999999999999999999999999999999999999999999999886    2567788999


Q ss_pred             eeCCCCCCCCCHHHHHhhccc
Q psy16345         97 LQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      +|+..+-+..||+|.+.+|.-
T Consensus        81 pQ~s~laFpFtv~eVV~mGr~  101 (259)
T COG4559          81 PQNSSLAFPFTVQEVVQMGRI  101 (259)
T ss_pred             ccCcccccceEHHHHHHhccc
Confidence            999887556699999999873

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.92  E-value=6.4e-25  Score=191.98  Aligned_cols=98  Identities=21%  Similarity=0.342  Sum_probs=89.6

Q ss_pred             EEEEeeeEEEcC---CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC------------------------
Q psy16345         21 ELVFSGLSVTLD---KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL------------------------   73 (121)
Q Consensus        21 ~i~~~~l~~~~~---~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~------------------------   73 (121)
                      .|+++||+|+|.   ++++|+++||+|++|+++||+||||||||||+++|+|+++|                        
T Consensus      1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred             eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence            599999999995   34799999999999999999999999999999999999998                        


Q ss_pred             ------------------------------CccEEEECCEeCC----hhhcccEEEEeeCCCCCCCCCHHHHHhhcccCc
Q psy16345         74 ------------------------------DSGVIRLNKERLN----KRWKRKICYVLQQDIFFPELTLRQTLEVSIADE  119 (121)
Q Consensus        74 ------------------------------~~G~i~~~g~~~~----~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~  119 (121)
                                                    ++|+|.++|.++.    +.+|++++||+|++.||+. |++||+.++.+++
T Consensus      1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~~~a 1323 (1466)
T PTZ00265       1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGKEDA 1323 (1466)
T ss_pred             ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCCCCC
Confidence                                          5999999999986    3688999999999999975 9999999997543

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.92  E-value=3.4e-24  Score=157.43  Aligned_cols=95  Identities=28%  Similarity=0.436  Sum_probs=84.5

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC--CCCCccEEEECCEeCCh----hhcc-cE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR--VKLDSGVIRLNKERLNK----RWKR-KI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl--~~~~~G~i~~~g~~~~~----~~~~-~i   93 (121)
                      +++++++++.|+++.+|+++||++++|+++||+|+||||||||+++|+|+  ++|++|+|.++|.++..    .+++ .+
T Consensus         7 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   86 (252)
T CHL00131          7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGI   86 (252)
T ss_pred             eEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeE
Confidence            59999999999888899999999999999999999999999999999998  57899999999988752    2222 48


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +|++|++.+++.+++.+++.+.
T Consensus        87 ~~~~q~~~~~~~~~~~~~l~~~  108 (252)
T CHL00131         87 FLAFQYPIEIPGVSNADFLRLA  108 (252)
T ss_pred             EEEeccccccccccHHHHHHHh
Confidence            8999999999989999998764

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.92  E-value=4.6e-24  Score=163.08  Aligned_cols=96  Identities=22%  Similarity=0.334  Sum_probs=83.8

Q ss_pred             cEEEEeeeEEEcC----CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC---ccEEEECCEeCCh----h
Q psy16345         20 LELVFSGLSVTLD----KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD---SGVIRLNKERLNK----R   88 (121)
Q Consensus        20 ~~i~~~~l~~~~~----~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~----~   88 (121)
                      ..++++|+++.|+    ...+++++||+|++||++||+|+||||||||+++|+|+++|.   +|+|.++|+++..    .
T Consensus        11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~   90 (330)
T PRK09473         11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE   90 (330)
T ss_pred             ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence            4699999999994    257999999999999999999999999999999999999986   9999999998742    1


Q ss_pred             ---h-cccEEEEeeCC--CCCCCCCHHHHHhhc
Q psy16345         89 ---W-KRKICYVLQQD--IFFPELTLRQTLEVS  115 (121)
Q Consensus        89 ---~-~~~i~~v~Q~~--~l~~~ltv~e~l~~~  115 (121)
                         + ++.++||||++  .+++.+|+.+++...
T Consensus        91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~  123 (330)
T PRK09473         91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEV  123 (330)
T ss_pred             HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHH
Confidence               2 24799999998  588889999988643

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.7e-24  Score=160.08  Aligned_cols=94  Identities=28%  Similarity=0.392  Sum_probs=81.0

Q ss_pred             EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhh-cccEEEEee
Q psy16345         21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRW-KRKICYVLQ   98 (121)
Q Consensus        21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~-~~~i~~v~Q   98 (121)
                      +++++|+++.|+ ++.+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.... ++.++|++|
T Consensus         6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q   85 (272)
T PRK15056          6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ   85 (272)
T ss_pred             eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence            599999999995 578999999999999999999999999999999999999999999999999875433 346999999


Q ss_pred             CCCCC--CCCCHHHHHhh
Q psy16345         99 QDIFF--PELTLRQTLEV  114 (121)
Q Consensus        99 ~~~l~--~~ltv~e~l~~  114 (121)
                      ++.+.  ...++++++.+
T Consensus        86 ~~~~~~~~~~~~~~~i~~  103 (272)
T PRK15056         86 SEEVDWSFPVLVEDVVMM  103 (272)
T ss_pred             ccccccCCCcchhhheec
Confidence            97642  23467888764

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.91  E-value=2.4e-24  Score=155.36  Aligned_cols=93  Identities=17%  Similarity=0.352  Sum_probs=81.4

Q ss_pred             EEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hhcccE
Q psy16345         23 VFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RWKRKI   93 (121)
Q Consensus        23 ~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~~~~i   93 (121)
                      .+.++.+.|+ +.++++++||+|++|++++|+|+|||||||||++|+|+++|++|+|.++|.++..        ..++.+
T Consensus         2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i   81 (218)
T cd03290           2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV   81 (218)
T ss_pred             eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence            4678999996 4679999999999999999999999999999999999999999999999987531        234679


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +|++|++.++ ..|++||+.+..
T Consensus        82 ~~~~q~~~~~-~~t~~~nl~~~~  103 (218)
T cd03290          82 AYAAQKPWLL-NATVEENITFGS  103 (218)
T ss_pred             EEEcCCCccc-cccHHHHHhhcC
Confidence            9999999887 469999998754

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=4.4e-24  Score=162.95  Aligned_cols=94  Identities=21%  Similarity=0.310  Sum_probs=81.7

Q ss_pred             EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC----CCccEEEECCEeCCh----h
Q psy16345         21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK----LDSGVIRLNKERLNK----R   88 (121)
Q Consensus        21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~----~~~G~i~~~g~~~~~----~   88 (121)
                      +|+++|+++.|+.    ..+|+||||+|++||++||+|+||||||||+++|+|+++    +++|+|.++|+++..    .
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~   82 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE   82 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence            5899999999975    469999999999999999999999999999999999987    489999999998742    1


Q ss_pred             ----hcccEEEEeeCC--CCCCCCCHHHHHhh
Q psy16345         89 ----WKRKICYVLQQD--IFFPELTLRQTLEV  114 (121)
Q Consensus        89 ----~~~~i~~v~Q~~--~l~~~ltv~e~l~~  114 (121)
                          +++.++||||++  .++|.+++.+++..
T Consensus        83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~  114 (326)
T PRK11022         83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIME  114 (326)
T ss_pred             HHHHhCCCEEEEecCchhhcCCcCCHHHHHHH
Confidence                234699999998  47888999887754

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.91  E-value=2e-24  Score=152.85  Aligned_cols=84  Identities=27%  Similarity=0.463  Sum_probs=73.6

Q ss_pred             cCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC------hhhcccEEEEeeCCC--C
Q psy16345         31 LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN------KRWKRKICYVLQQDI--F  102 (121)
Q Consensus        31 ~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~------~~~~~~i~~v~Q~~~--l  102 (121)
                      |+++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|+++.      ..+++.++|++|++.  +
T Consensus         2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   81 (190)
T TIGR01166         2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL   81 (190)
T ss_pred             CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence            35678999999999999999999999999999999999999999999999998873      134567999999973  4


Q ss_pred             CCCCCHHHHHhhc
Q psy16345        103 FPELTLRQTLEVS  115 (121)
Q Consensus       103 ~~~ltv~e~l~~~  115 (121)
                      + ..|++||+.+.
T Consensus        82 ~-~~tv~~nl~~~   93 (190)
T TIGR01166        82 F-AADVDQDVAFG   93 (190)
T ss_pred             c-cccHHHHHHHH
Confidence            4 46999999875

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.91  E-value=2.6e-24  Score=173.54  Aligned_cols=88  Identities=33%  Similarity=0.426  Sum_probs=81.9

Q ss_pred             EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345         21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ   99 (121)
Q Consensus        21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~   99 (121)
                      +++++|++++|+ ++++|+++||+|++|++++|+|+||||||||||+|+|+++|++|+|.+++       ...++||+|+
T Consensus         4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-------~~~i~~v~Q~   76 (552)
T TIGR03719         4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-------GIKVGYLPQE   76 (552)
T ss_pred             EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-------CCEEEEEecc
Confidence            699999999997 77899999999999999999999999999999999999999999999874       2469999999


Q ss_pred             CCCCCCCCHHHHHhhc
Q psy16345        100 DIFFPELTLRQTLEVS  115 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~  115 (121)
                      +.+++++|++||+.++
T Consensus        77 ~~~~~~~tv~e~i~~~   92 (552)
T TIGR03719        77 PQLDPTKTVRENVEEG   92 (552)
T ss_pred             CCCCCCCcHHHHHHHh
Confidence            9998899999999875

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=3e-24  Score=172.37  Aligned_cols=88  Identities=22%  Similarity=0.488  Sum_probs=81.7

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD  100 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~  100 (121)
                      +|+++|++++|+++++|+++||+|.+|++++|+||||||||||||+|+|+++|++|+|.+++.       ..++|++|++
T Consensus         1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------~~i~~~~q~~   73 (530)
T PRK15064          1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-------ERLGKLRQDQ   73 (530)
T ss_pred             CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-------CEEEEEeccC
Confidence            378999999999889999999999999999999999999999999999999999999999862       3699999999


Q ss_pred             CCCCCCCHHHHHhhc
Q psy16345        101 IFFPELTLRQTLEVS  115 (121)
Q Consensus       101 ~l~~~ltv~e~l~~~  115 (121)
                      .+++.+|++||+.++
T Consensus        74 ~~~~~~tv~e~l~~~   88 (530)
T PRK15064         74 FAFEEFTVLDTVIMG   88 (530)
T ss_pred             CcCCCCcHHHHHHHh
Confidence            888899999999864

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.91  E-value=5.9e-24  Score=156.94  Aligned_cols=87  Identities=38%  Similarity=0.599  Sum_probs=78.4

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD  100 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~  100 (121)
                      +++++|+++.|+++.+|+++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.+++       +..++|++|++
T Consensus         4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-------~~~i~~v~q~~   76 (251)
T PRK09544          4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-------KLRIGYVPQKL   76 (251)
T ss_pred             EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-------ccCEEEecccc
Confidence            58999999999888899999999999999999999999999999999999999999999986       24699999998


Q ss_pred             CCCCC--CCHHHHHhh
Q psy16345        101 IFFPE--LTLRQTLEV  114 (121)
Q Consensus       101 ~l~~~--ltv~e~l~~  114 (121)
                      .+++.  .++.+++.+
T Consensus        77 ~~~~~l~~~~~~~~~~   92 (251)
T PRK09544         77 YLDTTLPLTVNRFLRL   92 (251)
T ss_pred             ccccccChhHHHHHhc
Confidence            77765  378887654

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.91  E-value=3.1e-24  Score=156.80  Aligned_cols=87  Identities=28%  Similarity=0.425  Sum_probs=76.4

Q ss_pred             EEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---hhhcccEEEEe-eCCCCCC
Q psy16345         29 VTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---KRWKRKICYVL-QQDIFFP  104 (121)
Q Consensus        29 ~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~---~~~~~~i~~v~-Q~~~l~~  104 (121)
                      +.|+.+++|+++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++|.+..   ..+++.++|++ |++.+++
T Consensus        29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~  108 (236)
T cd03267          29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW  108 (236)
T ss_pred             cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence            5667788999999999999999999999999999999999999999999999998753   23456899998 5567888


Q ss_pred             CCCHHHHHhhc
Q psy16345        105 ELTLRQTLEVS  115 (121)
Q Consensus       105 ~ltv~e~l~~~  115 (121)
                      .+|++||+.+.
T Consensus       109 ~~tv~e~l~~~  119 (236)
T cd03267         109 DLPVIDSFYLL  119 (236)
T ss_pred             CCcHHHHHHHH
Confidence            89999998764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.91  E-value=6e-24  Score=173.65  Aligned_cols=96  Identities=26%  Similarity=0.343  Sum_probs=85.4

Q ss_pred             cEEEEeeeEEEcCC-----------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-
Q psy16345         20 LELVFSGLSVTLDK-----------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-   87 (121)
Q Consensus        20 ~~i~~~~l~~~~~~-----------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-   87 (121)
                      .+++++|+++.|+.           ..+|+++||+|++||++||+|+||||||||+|+|+|+++|++|+|+++|.++.. 
T Consensus       312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~  391 (623)
T PRK10261        312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL  391 (623)
T ss_pred             ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence            36999999999951           469999999999999999999999999999999999999999999999998742 


Q ss_pred             ------hhcccEEEEeeCC--CCCCCCCHHHHHhhc
Q psy16345         88 ------RWKRKICYVLQQD--IFFPELTLRQTLEVS  115 (121)
Q Consensus        88 ------~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~  115 (121)
                            .+++.++||+|++  .+++.+|+.+|+.+.
T Consensus       392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~  427 (623)
T PRK10261        392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEP  427 (623)
T ss_pred             CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHH
Confidence                  2456899999997  588889999999864

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.91  E-value=1.9e-24  Score=167.98  Aligned_cols=91  Identities=21%  Similarity=0.341  Sum_probs=79.5

Q ss_pred             eeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCE----eCC----h---hh-cccE
Q psy16345         26 GLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE----RLN----K---RW-KRKI   93 (121)
Q Consensus        26 ~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~----~~~----~---~~-~~~i   93 (121)
                      ++.++|+...+|+++||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|+    ++.    .   .. ++++
T Consensus        29 ~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i  108 (382)
T TIGR03415        29 EILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRV  108 (382)
T ss_pred             HHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence            4556677778999999999999999999999999999999999999999999999996    332    1   12 3579


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +||||++.+++++|++||+.++.
T Consensus       109 ~~vfQ~~~l~p~~Tv~eNi~~~~  131 (382)
T TIGR03415       109 SMVFQKFALMPWLTVEENVAFGL  131 (382)
T ss_pred             EEEECCCcCCCCCcHHHHHHHHH
Confidence            99999999999999999999864

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=2.8e-25  Score=158.47  Aligned_cols=97  Identities=27%  Similarity=0.433  Sum_probs=91.6

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICYV   96 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~v   96 (121)
                      ||+++|++++|+.+.+++++|++|++|.+++|||||||||||||.++++|++.++|+|+++|.++.    +.+.++++.+
T Consensus         1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL   80 (252)
T COG4604           1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL   80 (252)
T ss_pred             CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999999999999999985    4678889999


Q ss_pred             eeCCCCCCCCCHHHHHhhccc
Q psy16345         97 LQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      -|+..+...+||+|-+.||.-
T Consensus        81 kQ~N~i~~rlTV~dLv~FGRf  101 (252)
T COG4604          81 KQENHINSRLTVRDLVGFGRF  101 (252)
T ss_pred             HhhchhhheeEHHHHhhcCCC
Confidence            999999999999999999874

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.91  E-value=7.9e-24  Score=172.97  Aligned_cols=96  Identities=22%  Similarity=0.353  Sum_probs=83.3

Q ss_pred             EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC-----------
Q psy16345         21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL-----------   85 (121)
Q Consensus        21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~-----------   85 (121)
                      +|+++|+++.|+.    .++|+++||++++|+++||+|+||||||||+|+|+|+++|++|+|.++|..+           
T Consensus        12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~   91 (623)
T PRK10261         12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS   91 (623)
T ss_pred             eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence            6999999999962    4799999999999999999999999999999999999999999999988643           


Q ss_pred             --Ch----hh-cccEEEEeeCC--CCCCCCCHHHHHhhcc
Q psy16345         86 --NK----RW-KRKICYVLQQD--IFFPELTLRQTLEVSI  116 (121)
Q Consensus        86 --~~----~~-~~~i~~v~Q~~--~l~~~ltv~e~l~~~~  116 (121)
                        ..    .+ ++.++||+|++  .+++.+||+||+.++.
T Consensus        92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~  131 (623)
T PRK10261         92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESI  131 (623)
T ss_pred             cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHH
Confidence              11    12 24799999998  6788899999998754

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.91  E-value=6.1e-24  Score=155.61  Aligned_cols=92  Identities=30%  Similarity=0.502  Sum_probs=79.7

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC--CCCccEEEECCEeCCh----h-hcccE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV--KLDSGVIRLNKERLNK----R-WKRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~--~~~~G~i~~~g~~~~~----~-~~~~i   93 (121)
                      +++++|+++.|+++++++++||+|++|++++|+|+||||||||+++|+|++  +|++|+|.++|.++..    . .++.+
T Consensus         1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   80 (248)
T PRK09580          1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI   80 (248)
T ss_pred             CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence            378999999998888999999999999999999999999999999999995  6999999999987642    2 23569


Q ss_pred             EEEeeCCCCCCCCCHHHHH
Q psy16345         94 CYVLQQDIFFPELTLRQTL  112 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l  112 (121)
                      +|++|++.+++.++..+++
T Consensus        81 ~~~~q~~~~~~~~~~~~~~   99 (248)
T PRK09580         81 FMAFQYPVEIPGVSNQFFL   99 (248)
T ss_pred             EEEecCchhccchhHHHHH
Confidence            9999998888776665554

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.91  E-value=2.6e-24  Score=150.77  Aligned_cols=96  Identities=39%  Similarity=0.522  Sum_probs=86.9

Q ss_pred             EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------h
Q psy16345         21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------R   88 (121)
Q Consensus        21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~   88 (121)
                      .|+++++++..+.    -.+|++|+|.+++||.+||||||||||||||-+++|+..|++|+|++.|+++.+        -
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~   85 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL   85 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence            4888999888754    469999999999999999999999999999999999999999999999999852        2


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +.+++|||||.+.+.|+||..||+...+
T Consensus        86 R~~~vGfVFQSF~Lip~ltAlENV~lPl  113 (228)
T COG4181          86 RARHVGFVFQSFHLIPNLTALENVALPL  113 (228)
T ss_pred             hccceeEEEEeeeccccchhhhhccchh
Confidence            4568999999999999999999998765

>PLN03130 ABC transporter C family member; Provisional

Probab=99.91  E-value=3.4e-24  Score=188.82  Aligned_cols=95  Identities=23%  Similarity=0.427  Sum_probs=88.3

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~   94 (121)
                      .|+++||+++|+.  .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++.    +.+|++++
T Consensus      1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Is 1316 (1622)
T PLN03130       1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLG 1316 (1622)
T ss_pred             cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccE
Confidence            5999999999964  47999999999999999999999999999999999999999999999999986    36889999


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +|+|++.+|.. |++||+..+.
T Consensus      1317 iVpQdp~LF~G-TIreNLd~~~ 1337 (1622)
T PLN03130       1317 IIPQAPVLFSG-TVRFNLDPFN 1337 (1622)
T ss_pred             EECCCCccccc-cHHHHhCcCC
Confidence            99999999987 9999998764

>PLN03211 ABC transporter G-25; Provisional

Probab=99.91  E-value=4.2e-24  Score=175.52  Aligned_cols=89  Identities=44%  Similarity=0.765  Sum_probs=79.6

Q ss_pred             EEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC--ccEEEECCEeCChhhcccEEEEeeCCCCCCC
Q psy16345         28 SVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD--SGVIRLNKERLNKRWKRKICYVLQQDIFFPE  105 (121)
Q Consensus        28 ~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~--~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~  105 (121)
                      +++|+++.+|+++|+++++||++||+|||||||||||++|+|+.+|.  +|+|.++|+++....+++++||+|++.+++.
T Consensus        75 ~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~  154 (659)
T PLN03211         75 TRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPH  154 (659)
T ss_pred             cccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCc
Confidence            34455678999999999999999999999999999999999999885  8999999998866556779999999999999


Q ss_pred             CCHHHHHhhcc
Q psy16345        106 LTLRQTLEVSI  116 (121)
Q Consensus       106 ltv~e~l~~~~  116 (121)
                      +||+||+.+..
T Consensus       155 lTV~E~l~~~a  165 (659)
T PLN03211        155 LTVRETLVFCS  165 (659)
T ss_pred             CCHHHHHHHHH
Confidence            99999998753

>PLN03232 ABC transporter C family member; Provisional

Probab=99.91  E-value=3.1e-24  Score=188.23  Aligned_cols=95  Identities=25%  Similarity=0.460  Sum_probs=88.2

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~   94 (121)
                      .|+++|++++|+.  +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++.    +.+|++++
T Consensus      1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232       1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred             cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcE
Confidence            5999999999953  57999999999999999999999999999999999999999999999999986    36889999


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ||+|++.+|+. |++||+..+.
T Consensus      1314 iVpQdp~LF~g-TIr~NL~~~~ 1334 (1495)
T PLN03232       1314 IIPQSPVLFSG-TVRFNIDPFS 1334 (1495)
T ss_pred             EECCCCeeeCc-cHHHHcCCCC
Confidence            99999999987 9999998754

>KOG0055|consensus

Probab=99.90  E-value=2.5e-24  Score=182.70  Aligned_cols=99  Identities=31%  Similarity=0.503  Sum_probs=91.4

Q ss_pred             EEEEeeeEEEcCCc---ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345         21 ELVFSGLSVTLDKR---PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~~~---~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i   93 (121)
                      .++++||+|+|..+   .+|+++||.|++|+.+||||+|||||||++++|.+++.|++|+|.++|.++.    +.+|.+|
T Consensus       350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~i  429 (1228)
T KOG0055|consen  350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQI  429 (1228)
T ss_pred             ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhc
Confidence            59999999999765   5899999999999999999999999999999999999999999999999986    3678899


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhcccCcC
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSIADED  120 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~  120 (121)
                      |.|.|+|.||.. |++||+.++.++++
T Consensus       430 glV~QePvlF~~-tI~eNI~~G~~dat  455 (1228)
T KOG0055|consen  430 GLVSQEPVLFAT-TIRENIRYGKPDAT  455 (1228)
T ss_pred             Ceeeechhhhcc-cHHHHHhcCCCccc
Confidence            999999988864 99999999997654

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.90  E-value=9.9e-24  Score=168.96  Aligned_cols=96  Identities=28%  Similarity=0.365  Sum_probs=83.0

Q ss_pred             cEEEEeeeEEEcC-----CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEEC-CEe---CC----
Q psy16345         20 LELVFSGLSVTLD-----KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN-KER---LN----   86 (121)
Q Consensus        20 ~~i~~~~l~~~~~-----~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~-g~~---~~----   86 (121)
                      .+++++|++++|+     .+++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++ |.+   +.    
T Consensus       278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~  357 (520)
T TIGR03269       278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP  357 (520)
T ss_pred             ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence            3699999999994     2579999999999999999999999999999999999999999999995 532   21    


Q ss_pred             ---hhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         87 ---KRWKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        87 ---~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                         ..++++++|++|++.+++.+|++||+.+.
T Consensus       358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~  389 (520)
T TIGR03269       358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEA  389 (520)
T ss_pred             hhHHHHhhhEEEEccCcccCCCCcHHHHHHHH
Confidence               12355799999999899999999999864

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.8e-24  Score=171.33  Aligned_cols=100  Identities=31%  Similarity=0.455  Sum_probs=91.9

Q ss_pred             EEEEeeeEEEcCCc--ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345         21 ELVFSGLSVTLDKR--PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~~--~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~   94 (121)
                      .++++|++|+|.++  ++|+|+||++++||.+||+|+||||||||+.+|+|.++|++|+|.++|.++.    +.+++.++
T Consensus       336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~  415 (573)
T COG4987         336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS  415 (573)
T ss_pred             eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence            59999999999764  5999999999999999999999999999999999999999999999999885    24788999


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcccCcCC
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSIADEDE  121 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~  121 (121)
                      ++.|.+++|.. |+++|+.++.+++++
T Consensus       416 vl~Qr~hlF~~-Tlr~NL~lA~~~AsD  441 (573)
T COG4987         416 VLTQRVHLFSG-TLRDNLRLANPDASD  441 (573)
T ss_pred             hhccchHHHHH-HHHHHHhhcCCCCCH
Confidence            99999999977 999999999987653

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.90  E-value=6.3e-24  Score=169.31  Aligned_cols=96  Identities=25%  Similarity=0.305  Sum_probs=84.8

Q ss_pred             cEEEEeeeEEEc---CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-CccEEEECCEeCCh-----hhc
Q psy16345         20 LELVFSGLSVTL---DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-DSGVIRLNKERLNK-----RWK   90 (121)
Q Consensus        20 ~~i~~~~l~~~~---~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-~~G~i~~~g~~~~~-----~~~   90 (121)
                      .+++++|+++.|   +++.+|+++||+|.+||+++|+||||||||||+|+|+|+++| ++|+|.++|+++..     .++
T Consensus       256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~  335 (500)
T TIGR02633       256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR  335 (500)
T ss_pred             ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence            369999999998   346799999999999999999999999999999999999985 89999999988741     346


Q ss_pred             ccEEEEeeCC---CCCCCCCHHHHHhhc
Q psy16345         91 RKICYVLQQD---IFFPELTLRQTLEVS  115 (121)
Q Consensus        91 ~~i~~v~Q~~---~l~~~ltv~e~l~~~  115 (121)
                      ++++|++|++   .+++.+|+++|+.++
T Consensus       336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~  363 (500)
T TIGR02633       336 AGIAMVPEDRKRHGIVPILGVGKNITLS  363 (500)
T ss_pred             CCCEEcCcchhhCCcCCCCCHHHHhcch
Confidence            6899999996   488889999999874

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.90  E-value=7.4e-24  Score=169.34  Aligned_cols=94  Identities=30%  Similarity=0.508  Sum_probs=83.2

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKIC   94 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~   94 (121)
                      .+++++|+++.|+  .+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++.+     ..++.++
T Consensus       264 ~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~  341 (510)
T PRK09700        264 TVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA  341 (510)
T ss_pred             cEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE
Confidence            3699999998764  48999999999999999999999999999999999999999999999988742     2356799


Q ss_pred             EEeeC---CCCCCCCCHHHHHhhc
Q psy16345         95 YVLQQ---DIFFPELTLRQTLEVS  115 (121)
Q Consensus        95 ~v~Q~---~~l~~~ltv~e~l~~~  115 (121)
                      |++|+   ..+++.+|++||+.++
T Consensus       342 ~v~q~~~~~~~~~~~tv~e~l~~~  365 (510)
T PRK09700        342 YITESRRDNGFFPNFSIAQNMAIS  365 (510)
T ss_pred             EccCccccCCCcCCCcHHHHhccc
Confidence            99998   4588889999999864

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.90  E-value=7.6e-24  Score=146.01  Aligned_cols=97  Identities=33%  Similarity=0.608  Sum_probs=89.5

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC---ccEEEECCEeCCh--hhcccEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD---SGVIRLNKERLNK--RWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~--~~~~~i~~   95 (121)
                      ++.++|++.+.+++.+|.++||+|.+||++.|+||||||||||+..+.|.+.+.   +|++++++++++.  ..+|++|+
T Consensus         2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~Gi   81 (213)
T COG4136           2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGI   81 (213)
T ss_pred             ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheee
Confidence            477899999999999999999999999999999999999999999999988753   7999999999873  56789999


Q ss_pred             EeeCCCCCCCCCHHHHHhhccc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      +|||+-+||+++|.+|+.|+++
T Consensus        82 LFQD~lLFphlsVg~Nl~fAlp  103 (213)
T COG4136          82 LFQDALLFPHLSVGQNLLFALP  103 (213)
T ss_pred             eecccccccccccccceEEecC
Confidence            9999999999999999999875

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=8.9e-24  Score=168.83  Aligned_cols=96  Identities=22%  Similarity=0.317  Sum_probs=84.0

Q ss_pred             cEEEEeeeEEEcC---CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-CCccEEEECCEeCCh-----hhc
Q psy16345         20 LELVFSGLSVTLD---KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-LDSGVIRLNKERLNK-----RWK   90 (121)
Q Consensus        20 ~~i~~~~l~~~~~---~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-~~~G~i~~~g~~~~~-----~~~   90 (121)
                      .+++++|+++.|+   ++.+++++||+|++|++++|+|+||||||||+|+|+|+++ |++|+|.++|+++..     .++
T Consensus       258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~  337 (506)
T PRK13549        258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA  337 (506)
T ss_pred             ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence            3599999999993   4579999999999999999999999999999999999998 599999999988741     235


Q ss_pred             ccEEEEeeCC---CCCCCCCHHHHHhhc
Q psy16345         91 RKICYVLQQD---IFFPELTLRQTLEVS  115 (121)
Q Consensus        91 ~~i~~v~Q~~---~l~~~ltv~e~l~~~  115 (121)
                      +.++|++|++   .+++.+|+.||+.++
T Consensus       338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~  365 (506)
T PRK13549        338 QGIAMVPEDRKRDGIVPVMGVGKNITLA  365 (506)
T ss_pred             CCCEEeCcchhhCCCcCCCCHHHHhhhh
Confidence            6799999995   477889999999864

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.90  E-value=2.6e-23  Score=144.54  Aligned_cols=77  Identities=32%  Similarity=0.468  Sum_probs=70.7

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEEE
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICYV   96 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~v   96 (121)
                      ++++|+++.|+++++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..     ..++.++|+
T Consensus         1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~   80 (163)
T cd03216           1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMV   80 (163)
T ss_pred             CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEE
Confidence            468999999988899999999999999999999999999999999999999999999999988752     245679999


Q ss_pred             ee
Q psy16345         97 LQ   98 (121)
Q Consensus        97 ~Q   98 (121)
                      +|
T Consensus        81 ~q   82 (163)
T cd03216          81 YQ   82 (163)
T ss_pred             Ee
Confidence            98

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PTZ00243 ABC transporter; Provisional

Probab=99.90  E-value=1.2e-23  Score=185.01  Aligned_cols=94  Identities=29%  Similarity=0.510  Sum_probs=87.3

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~   94 (121)
                      .|+++||+++|+.  ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++.    +.+|++++
T Consensus      1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243       1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred             eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence            5999999999964  45999999999999999999999999999999999999999999999999986    36889999


Q ss_pred             EEeeCCCCCCCCCHHHHHhhc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ||||++.+|.. |+++||...
T Consensus      1388 iVpQdp~LF~g-TIreNIdp~ 1407 (1560)
T PTZ00243       1388 MIPQDPVLFDG-TVRQNVDPF 1407 (1560)
T ss_pred             EECCCCccccc-cHHHHhCcc
Confidence            99999999977 999999763

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.90  E-value=6.6e-24  Score=186.36  Aligned_cols=92  Identities=21%  Similarity=0.373  Sum_probs=86.7

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~   94 (121)
                      .|+++|++++|+.  .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++.    +.+|++++
T Consensus      1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~ 1363 (1522)
T TIGR00957      1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKIT 1363 (1522)
T ss_pred             cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCe
Confidence            5999999999964  47999999999999999999999999999999999999999999999999986    36889999


Q ss_pred             EEeeCCCCCCCCCHHHHHh
Q psy16345         95 YVLQQDIFFPELTLRQTLE  113 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~  113 (121)
                      +|+|++.+|.. |+++|+.
T Consensus      1364 iVpQdp~LF~g-TIr~NLd 1381 (1522)
T TIGR00957      1364 IIPQDPVLFSG-SLRMNLD 1381 (1522)
T ss_pred             EECCCCcccCc-cHHHHcC
Confidence            99999999987 9999997

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.90  E-value=1.7e-23  Score=167.64  Aligned_cols=95  Identities=26%  Similarity=0.470  Sum_probs=81.2

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC--CCCccEEEEC------------------
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV--KLDSGVIRLN------------------   81 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~--~~~~G~i~~~------------------   81 (121)
                      |+++|++++|+++++|+++||++.+|++++|+||||||||||+|+|+|++  +|++|+|.++                  
T Consensus         1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~   80 (520)
T TIGR03269         1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE   80 (520)
T ss_pred             CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence            46899999998888999999999999999999999999999999999997  6999999996                  


Q ss_pred             -----CEeC----------C----hhhcccEEEEeeC-CCCCCCCCHHHHHhhcc
Q psy16345         82 -----KERL----------N----KRWKRKICYVLQQ-DIFFPELTLRQTLEVSI  116 (121)
Q Consensus        82 -----g~~~----------~----~~~~~~i~~v~Q~-~~l~~~ltv~e~l~~~~  116 (121)
                           |.++          .    ..+++.++|++|+ +.+++.+|++||+.++.
T Consensus        81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~  135 (520)
T TIGR03269        81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEAL  135 (520)
T ss_pred             ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHH
Confidence                 2221          0    1235679999997 67888899999998753

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.90  E-value=1e-23  Score=169.87  Aligned_cols=90  Identities=23%  Similarity=0.352  Sum_probs=82.6

Q ss_pred             EEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345         21 ELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~   95 (121)
                      .++++|++|+|++ +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..    .++++++|
T Consensus       322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~  401 (547)
T PRK10522        322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSA  401 (547)
T ss_pred             eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEE
Confidence            5999999999965 569999999999999999999999999999999999999999999999999862    57889999


Q ss_pred             EeeCCCCCCCCCHHHH
Q psy16345         96 VLQQDIFFPELTLRQT  111 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~  111 (121)
                      |+|++.+|+. |+++|
T Consensus       402 v~q~~~lf~~-ti~~n  416 (547)
T PRK10522        402 VFTDFHLFDQ-LLGPE  416 (547)
T ss_pred             EecChhHHHH-hhccc
Confidence            9999988876 77776

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.90  E-value=1.8e-23  Score=167.86  Aligned_cols=95  Identities=27%  Similarity=0.396  Sum_probs=83.3

Q ss_pred             cEEEEeeeEEEcC-----------CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-
Q psy16345         20 LELVFSGLSVTLD-----------KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-   87 (121)
Q Consensus        20 ~~i~~~~l~~~~~-----------~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-   87 (121)
                      .+++++|+++.|+           ++.+|+++||+|++|+++||+||||||||||+|+|+|+++ ++|+|+++|+++.. 
T Consensus       274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~  352 (529)
T PRK15134        274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL  352 (529)
T ss_pred             CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc
Confidence            3599999999995           3579999999999999999999999999999999999985 89999999988742 


Q ss_pred             ------hhcccEEEEeeCC--CCCCCCCHHHHHhhc
Q psy16345         88 ------RWKRKICYVLQQD--IFFPELTLRQTLEVS  115 (121)
Q Consensus        88 ------~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~  115 (121)
                            .+++.++|++|++  .+++.+|++||+.++
T Consensus       353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~  388 (529)
T PRK15134        353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEG  388 (529)
T ss_pred             chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHH
Confidence                  1356799999997  478889999999875

>KOG0056|consensus

Probab=99.90  E-value=5.8e-24  Score=167.93  Aligned_cols=99  Identities=27%  Similarity=0.534  Sum_probs=92.4

Q ss_pred             EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345         21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~   95 (121)
                      .|+++|++|.|. ++++|+||||++.+|+.+||+||||+||||+||+|.++.+..+|.|.++|++++.    .+|++||.
T Consensus       537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGV  616 (790)
T KOG0056|consen  537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGV  616 (790)
T ss_pred             eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCc
Confidence            599999999995 5899999999999999999999999999999999999999999999999999963    68999999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcccCcC
Q psy16345         96 VLQQDIFFPELTLRQTLEVSIADED  120 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~~~~~  120 (121)
                      ||||..+|.+ |+..|+.++.+.++
T Consensus       617 VPQDtvLFNd-TI~yNIryak~~As  640 (790)
T KOG0056|consen  617 VPQDTVLFND-TILYNIRYAKPSAS  640 (790)
T ss_pred             ccCcceeecc-eeeeheeecCCCCC
Confidence            9999999987 99999999887654

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.89  E-value=9.7e-23  Score=152.94  Aligned_cols=86  Identities=29%  Similarity=0.553  Sum_probs=78.1

Q ss_pred             ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345         19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ   98 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q   98 (121)
                      ...|+++++++.  .+++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|         .++|++|
T Consensus        37 ~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g---------~i~yv~q  105 (282)
T cd03291          37 DNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG---------RISFSSQ  105 (282)
T ss_pred             CCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC---------EEEEEeC
Confidence            346999999985  46799999999999999999999999999999999999999999999987         4899999


Q ss_pred             CCCCCCCCCHHHHHhhcc
Q psy16345         99 QDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.+++. |++||+.++.
T Consensus       106 ~~~l~~~-tv~enl~~~~  122 (282)
T cd03291         106 FSWIMPG-TIKENIIFGV  122 (282)
T ss_pred             ccccccc-CHHHHhhccc
Confidence            9988875 9999998753

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.89  E-value=5.4e-23  Score=183.01  Aligned_cols=96  Identities=25%  Similarity=0.326  Sum_probs=88.1

Q ss_pred             cEEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEE
Q psy16345         20 LELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKIC   94 (121)
Q Consensus        20 ~~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~   94 (121)
                      .+++++|+++.|++  +.+|+++||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|+++.+   ..++.+|
T Consensus      1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257      1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred             ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence            35999999999985  579999999999999999999999999999999999999999999999998852   4567899


Q ss_pred             EEeeCCCCCCCCCHHHHHhhc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      |++|++.+++.+|++|++.+.
T Consensus      2016 y~pQ~~~L~~~LTv~E~L~l~ 2036 (2272)
T TIGR01257      2016 YCPQFDAIDDLLTGREHLYLY 2036 (2272)
T ss_pred             EEeccccCCCCCCHHHHHHHH
Confidence            999999999999999999864

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.89  E-value=5.5e-23  Score=165.02  Aligned_cols=94  Identities=32%  Similarity=0.419  Sum_probs=81.7

Q ss_pred             EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCCh----
Q psy16345         21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLNK----   87 (121)
Q Consensus        21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~~----   87 (121)
                      +++++|+++.|++    +++|+++||+|.+||++||+||||||||||+|+|+|+++|     ++|+|.++|.++..    
T Consensus         5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~   84 (529)
T PRK15134          5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ   84 (529)
T ss_pred             eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence            5999999999963    5799999999999999999999999999999999999986     79999999998742    


Q ss_pred             ---hh-cccEEEEeeCCC--CCCCCCHHHHHhh
Q psy16345         88 ---RW-KRKICYVLQQDI--FFPELTLRQTLEV  114 (121)
Q Consensus        88 ---~~-~~~i~~v~Q~~~--l~~~ltv~e~l~~  114 (121)
                         .+ ++.++|++|++.  +++.+++.+++.+
T Consensus        85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~  117 (529)
T PRK15134         85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYE  117 (529)
T ss_pred             HHHHHhcCceEEEecCchhhcCchhhHHHHHHH
Confidence               12 257999999975  6677899999874

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.89  E-value=5.4e-23  Score=166.10  Aligned_cols=90  Identities=28%  Similarity=0.519  Sum_probs=81.8

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ   99 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~   99 (121)
                      .+++++|+++.|+++.+|+++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.+++ +      ..++|++|+
T Consensus       323 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~------~~i~~v~q~  395 (556)
T PRK11819        323 KVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T------VKLAYVDQS  395 (556)
T ss_pred             eEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c------eEEEEEeCc
Confidence            469999999999888999999999999999999999999999999999999999999999853 2      259999999


Q ss_pred             C-CCCCCCCHHHHHhhcc
Q psy16345        100 D-IFFPELTLRQTLEVSI  116 (121)
Q Consensus       100 ~-~l~~~ltv~e~l~~~~  116 (121)
                      + .+++.+|++||+.+..
T Consensus       396 ~~~~~~~~tv~e~l~~~~  413 (556)
T PRK11819        396 RDALDPNKTVWEEISGGL  413 (556)
T ss_pred             hhhcCCCCCHHHHHHhhc
Confidence            6 6788899999998753

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.89  E-value=9.5e-23  Score=181.46  Aligned_cols=97  Identities=21%  Similarity=0.346  Sum_probs=88.9

Q ss_pred             cEEEEeeeEEEcC--CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEE
Q psy16345         20 LELVFSGLSVTLD--KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKIC   94 (121)
Q Consensus        20 ~~i~~~~l~~~~~--~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~   94 (121)
                      ..|+++|+++.|+  ++.+++++||++.+||+++|+|+||||||||+|+|+|+++|++|+|.++|.++..   ..++.++
T Consensus       927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257       927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred             ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE
Confidence            3699999999995  5789999999999999999999999999999999999999999999999998852   4567899


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |++|++.+++.+||+||+.+..
T Consensus      1007 ~~pQ~~~L~~~LTV~E~L~f~~ 1028 (2272)
T TIGR01257      1007 MCPQHNILFHHLTVAEHILFYA 1028 (2272)
T ss_pred             EEecCCcCCCCCCHHHHHHHHH
Confidence            9999999999999999998753

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.89  E-value=3.3e-23  Score=152.43  Aligned_cols=89  Identities=30%  Similarity=0.433  Sum_probs=77.3

Q ss_pred             EEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEEee
Q psy16345         23 VFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYVLQ   98 (121)
Q Consensus        23 ~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v~Q   98 (121)
                      +++||++.    .+|+++||++++|++++|+|+||||||||+++|+|++++ +|+|.++|+++..    .+++.++|++|
T Consensus         2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q   76 (248)
T PRK03695          2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQ   76 (248)
T ss_pred             cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecc
Confidence            46777775    389999999999999999999999999999999999865 8999999998742    34567999999


Q ss_pred             CCCCCCCCCHHHHHhhcc
Q psy16345         99 QDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.+++.+|+++|+.+..
T Consensus        77 ~~~~~~~~tv~~nl~~~~   94 (248)
T PRK03695         77 QQTPPFAMPVFQYLTLHQ   94 (248)
T ss_pred             cCccCCCccHHHHHHhcC
Confidence            988888889999998763

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.89  E-value=7.8e-23  Score=165.01  Aligned_cols=90  Identities=28%  Similarity=0.498  Sum_probs=81.6

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ   99 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~   99 (121)
                      .+++++|+++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .      ..++|++|+
T Consensus       321 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~------~~i~~v~q~  393 (552)
T TIGR03719       321 KVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T------VKLAYVDQS  393 (552)
T ss_pred             eEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c------eEEEEEeCC
Confidence            369999999999888999999999999999999999999999999999999999999999854 2      269999999


Q ss_pred             C-CCCCCCCHHHHHhhcc
Q psy16345        100 D-IFFPELTLRQTLEVSI  116 (121)
Q Consensus       100 ~-~l~~~ltv~e~l~~~~  116 (121)
                      + .+++.+|++||+.++.
T Consensus       394 ~~~~~~~~tv~e~l~~~~  411 (552)
T TIGR03719       394 RDALDPNKTVWEEISGGL  411 (552)
T ss_pred             ccccCCCCcHHHHHHhhc
Confidence            6 4788899999998764

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.89  E-value=2.4e-24  Score=152.26  Aligned_cols=95  Identities=26%  Similarity=0.464  Sum_probs=88.0

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC--------------
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--------------   86 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~--------------   86 (121)
                      .++++|+.++||...+|+.||++..+|+++.|||.|||||||+||||.-|..|+.|.|.++|+++.              
T Consensus         6 ~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~   85 (256)
T COG4598           6 ALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADK   85 (256)
T ss_pred             ceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCH
Confidence            588999999999999999999999999999999999999999999999999999999999998762              


Q ss_pred             ---hhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         87 ---KRWKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        87 ---~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                         ..+|.+.++|||+.+|+.++|+.||+.-+
T Consensus        86 ~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEa  117 (256)
T COG4598          86 RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEA  117 (256)
T ss_pred             HHHHHHHHHhhHhhhhcchhHHHHHHHHHHhc
Confidence               13567899999999999999999999754

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.89  E-value=3.2e-23  Score=164.90  Aligned_cols=94  Identities=21%  Similarity=0.258  Sum_probs=80.6

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICYV   96 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~v   96 (121)
                      +|+++|++++|+++.+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.    ..+++.++|+
T Consensus         3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~   82 (490)
T PRK10938          3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE   82 (490)
T ss_pred             eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence            589999999998888999999999999999999999999999999999999999999999887653    2334569999


Q ss_pred             eeCCCC--C------CCCCHHHHHhh
Q psy16345         97 LQQDIF--F------PELTLRQTLEV  114 (121)
Q Consensus        97 ~Q~~~l--~------~~ltv~e~l~~  114 (121)
                      +|++.+  +      ..+++++++.+
T Consensus        83 ~q~~~~~~~~~~~~~~~~~~~~~~~~  108 (490)
T PRK10938         83 WQRNNTDMLSPGEDDTGRTTAEIIQD  108 (490)
T ss_pred             ccCcchhhcccchhhccccHHHhccc
Confidence            998642  1      14688888754

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.89  E-value=2.5e-23  Score=182.05  Aligned_cols=95  Identities=28%  Similarity=0.533  Sum_probs=85.9

Q ss_pred             EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEEC-CEeCC----hhhccc
Q psy16345         21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN-KERLN----KRWKRK   92 (121)
Q Consensus        21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~-g~~~~----~~~~~~   92 (121)
                      .|+++||+|.|+.   .++|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++ |.++.    +.++++
T Consensus       382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~  461 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK  461 (1466)
T ss_pred             cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence            5999999999974   369999999999999999999999999999999999999999999994 57664    256788


Q ss_pred             EEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         93 ICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        93 i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++||+|++.+|+. |++||+.++.
T Consensus       462 Ig~V~Q~~~LF~~-TI~eNI~~g~  484 (1466)
T PTZ00265        462 IGVVSQDPLLFSN-SIKNNIKYSL  484 (1466)
T ss_pred             ccEecccccchhc-cHHHHHHhcC
Confidence            9999999999975 9999999974

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=8.8e-23  Score=163.89  Aligned_cols=88  Identities=33%  Similarity=0.538  Sum_probs=80.0

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ   99 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~   99 (121)
                      .+++++|+++.|+++.+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++.       +.++|++|+
T Consensus       318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-------~~i~~~~q~  390 (530)
T PRK15064        318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-------ANIGYYAQD  390 (530)
T ss_pred             ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-------eEEEEEccc
Confidence            3699999999998888999999999999999999999999999999999999999999999873       469999998


Q ss_pred             CC--CCCCCCHHHHHhh
Q psy16345        100 DI--FFPELTLRQTLEV  114 (121)
Q Consensus       100 ~~--l~~~ltv~e~l~~  114 (121)
                      +.  +++.+|+++|+.+
T Consensus       391 ~~~~~~~~~t~~~~~~~  407 (530)
T PRK15064        391 HAYDFENDLTLFDWMSQ  407 (530)
T ss_pred             ccccCCCCCcHHHHHHH
Confidence            64  5567899999865

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.89  E-value=1.5e-22  Score=166.19  Aligned_cols=95  Identities=27%  Similarity=0.413  Sum_probs=86.1

Q ss_pred             EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h----
Q psy16345         21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R----   88 (121)
Q Consensus        21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~----   88 (121)
                      +++++|++++|++    +.+|+++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..    +    
T Consensus         4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~   83 (648)
T PRK10535          4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL   83 (648)
T ss_pred             EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence            5999999999953    469999999999999999999999999999999999999999999999998752    2    


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      .++.++|++|++.+++++|+.||+.+.
T Consensus        84 ~~~~i~~v~q~~~l~~~~tv~enl~~~  110 (648)
T PRK10535         84 RREHFGFIFQRYHLLSHLTAAQNVEVP  110 (648)
T ss_pred             HhccEEEEeCCcccCCCCCHHHHHHHH
Confidence            246799999999999999999999864

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.89  E-value=1.1e-22  Score=166.42  Aligned_cols=90  Identities=31%  Similarity=0.555  Sum_probs=81.3

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ   99 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~   99 (121)
                      .+++++|+++.|+++++|+++||+|.+|+++||+||||||||||||+|+|+++|++|+|.+ |..      -.++|++|+
T Consensus       318 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~------~~i~y~~q~  390 (635)
T PRK11147        318 IVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK------LEVAYFDQH  390 (635)
T ss_pred             ceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC------cEEEEEeCc
Confidence            4699999999999889999999999999999999999999999999999999999999998 432      259999998


Q ss_pred             C-CCCCCCCHHHHHhhcc
Q psy16345        100 D-IFFPELTLRQTLEVSI  116 (121)
Q Consensus       100 ~-~l~~~ltv~e~l~~~~  116 (121)
                      + .+++.+||.||+.++.
T Consensus       391 ~~~l~~~~tv~e~l~~~~  408 (635)
T PRK11147        391 RAELDPEKTVMDNLAEGK  408 (635)
T ss_pred             ccccCCCCCHHHHHHhhc
Confidence            6 5888899999998753

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.89  E-value=2.9e-23  Score=156.55  Aligned_cols=98  Identities=24%  Similarity=0.382  Sum_probs=87.8

Q ss_pred             cEEEEeeeEEEcCCc------------------------ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc
Q psy16345         20 LELVFSGLSVTLDKR------------------------PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS   75 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~------------------------~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~   75 (121)
                      ..|+++|+.+-||.+                        .-++|+||+++.||++.|+|-||||||||+|+|.+|..|+.
T Consensus         3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~   82 (386)
T COG4175           3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR   82 (386)
T ss_pred             ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence            458899999988642                        24799999999999999999999999999999999999999


Q ss_pred             cEEEECCEeCCh--------hhcccEEEEeeCCCCCCCCCHHHHHhhccc
Q psy16345         76 GVIRLNKERLNK--------RWKRKICYVLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        76 G~i~~~g~~~~~--------~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      |+|.++|+++.+        -+++++++|||.+.|+|+.||.||+.|++.
T Consensus        83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe  132 (386)
T COG4175          83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE  132 (386)
T ss_pred             ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee
Confidence            999999998852        245679999999999999999999999984

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.89  E-value=1e-22  Score=177.78  Aligned_cols=96  Identities=45%  Similarity=0.672  Sum_probs=87.6

Q ss_pred             EEEEeeeEEEcC----CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC---CCccEEEECCEeCChhhcccE
Q psy16345         21 ELVFSGLSVTLD----KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK---LDSGVIRLNKERLNKRWKRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~----~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~i   93 (121)
                      .++++||++.|+    .+.+|++||+++++|+++||+|||||||||||++|+|+.+   +++|+|.++|+++...+++.+
T Consensus       759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i  838 (1394)
T TIGR00956       759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI  838 (1394)
T ss_pred             eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence            489999999984    4679999999999999999999999999999999999987   688999999999876677889


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +||+|++.+++.+||+||+.++.
T Consensus       839 ~yv~Q~~~~~~~~Tv~E~L~~~a  861 (1394)
T TIGR00956       839 GYVQQQDLHLPTSTVRESLRFSA  861 (1394)
T ss_pred             eeecccccCCCCCCHHHHHHHHH
Confidence            99999988888999999999854

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=1.3e-23  Score=148.52  Aligned_cols=96  Identities=31%  Similarity=0.441  Sum_probs=87.3

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEEe
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYVL   97 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v~   97 (121)
                      +++.++++...+.+++|.++||++.+||.+-|.||||||||||||+|+|+++|++|+|+++|..+..   ..++.+-|+-
T Consensus         2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG   81 (209)
T COG4133           2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG   81 (209)
T ss_pred             cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence            4678899999999999999999999999999999999999999999999999999999999988863   3456778888


Q ss_pred             eCCCCCCCCCHHHHHhhcc
Q psy16345         98 QQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        98 Q~~~l~~~ltv~e~l~~~~  116 (121)
                      -.+.+-+.+|++||+.|-.
T Consensus        82 H~~giK~eLTa~ENL~F~~  100 (209)
T COG4133          82 HQPGIKTELTALENLHFWQ  100 (209)
T ss_pred             ccccccchhhHHHHHHHHH
Confidence            8889999999999999854

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.89  E-value=5.1e-23  Score=166.18  Aligned_cols=91  Identities=15%  Similarity=0.312  Sum_probs=83.0

Q ss_pred             EEEEeeeEEEcCC-----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcc
Q psy16345         21 ELVFSGLSVTLDK-----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKR   91 (121)
Q Consensus        21 ~i~~~~l~~~~~~-----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~   91 (121)
                      .++++|++|+|++     +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+    .+++
T Consensus       337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~  416 (555)
T TIGR01194       337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD  416 (555)
T ss_pred             eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence            5999999999965     259999999999999999999999999999999999999999999999999862    5778


Q ss_pred             cEEEEeeCCCCCCCCCHHHHH
Q psy16345         92 KICYVLQQDIFFPELTLRQTL  112 (121)
Q Consensus        92 ~i~~v~Q~~~l~~~ltv~e~l  112 (121)
                      .++||+|++.+|.+ |+++|.
T Consensus       417 ~i~~v~q~~~lf~~-ti~~n~  436 (555)
T TIGR01194       417 LFSAIFADFHLFDD-LIGPDE  436 (555)
T ss_pred             hCcEEccChhhhhh-hhhccc
Confidence            89999999998876 888874

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.88  E-value=1.5e-22  Score=177.53  Aligned_cols=93  Identities=27%  Similarity=0.519  Sum_probs=85.9

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~   94 (121)
                      .|+++||+++|+.  +++|+|+||+|++||.+||+|+||||||||+++|+|+++ .+|+|.++|.++.    +.+|++++
T Consensus      1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271      1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred             eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceE
Confidence            5999999999964  689999999999999999999999999999999999987 7899999999986    36889999


Q ss_pred             EEeeCCCCCCCCCHHHHHhhc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ||||++.+|+. |+++||...
T Consensus      1296 ~IpQdp~LF~G-TIR~NLdp~ 1315 (1490)
T TIGR01271      1296 VIPQKVFIFSG-TFRKNLDPY 1315 (1490)
T ss_pred             EEeCCCccCcc-CHHHHhCcc
Confidence            99999999987 999999754

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>KOG0055|consensus

Probab=99.88  E-value=5.3e-23  Score=174.73  Aligned_cols=98  Identities=24%  Similarity=0.504  Sum_probs=90.5

Q ss_pred             EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345         21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i   93 (121)
                      .|+++||+|.|..   .++|+|+||++++|+.+||||||||||||.+.+|-++++|++|.|.++|+++.    +.+|+++
T Consensus       987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i 1066 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQI 1066 (1228)
T ss_pred             EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhc
Confidence            4999999999965   46999999999999999999999999999999999999999999999999986    4689999


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhcccCc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSIADE  119 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~~~~  119 (121)
                      +.|.|+|.||.. |++||+.+|..++
T Consensus      1067 ~lVsQEP~LF~~-TIrENI~YG~~~v 1091 (1228)
T KOG0055|consen 1067 GLVSQEPVLFNG-TIRENIAYGSEEV 1091 (1228)
T ss_pred             ceeccCchhhcc-cHHHHHhccCCCC
Confidence            999999999976 9999999995443

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.88  E-value=2.9e-22  Score=160.06  Aligned_cols=97  Identities=32%  Similarity=0.448  Sum_probs=85.1

Q ss_pred             cEEEEeeeEEEcCC-----------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC--
Q psy16345         20 LELVFSGLSVTLDK-----------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--   86 (121)
Q Consensus        20 ~~i~~~~l~~~~~~-----------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~--   86 (121)
                      ..++++|+++.|..           ..++++|||++++||++||||+||||||||.|+|+|+.+|++|.|.++|.+..  
T Consensus       279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~  358 (539)
T COG1123         279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT  358 (539)
T ss_pred             ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence            35899999999962           25799999999999999999999999999999999999999999999998732  


Q ss_pred             ----hhhcccEEEEeeCCC--CCCCCCHHHHHhhcc
Q psy16345         87 ----KRWKRKICYVLQQDI--FFPELTLRQTLEVSI  116 (121)
Q Consensus        87 ----~~~~~~i~~v~Q~~~--l~~~ltv~e~l~~~~  116 (121)
                          +..++++.+|||+|.  |.|.+||.+++...+
T Consensus       359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL  394 (539)
T COG1123         359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPL  394 (539)
T ss_pred             cchhhhhhhheEEEEeCcccccCccccHHHHHHhHH
Confidence                245678999999985  899999999988655

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.88  E-value=1.7e-22  Score=147.15  Aligned_cols=78  Identities=32%  Similarity=0.566  Sum_probs=69.8

Q ss_pred             EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      |+++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++... ....+|++|++.+++.+|++||+.+.
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~l~~~   78 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEP-GPDRMVVFQNYSLLPWLTVRENIALA   78 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-ChhheEEecCcccCCCCCHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999987531 12358999999999989999999875

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.88  E-value=6.9e-23  Score=137.47  Aligned_cols=75  Identities=47%  Similarity=0.785  Sum_probs=70.4

Q ss_pred             EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEEeeCCCCCCCCCHHHH
Q psy16345         37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYVLQQDIFFPELTLRQT  111 (121)
Q Consensus        37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v~Q~~~l~~~ltv~e~  111 (121)
                      |+++||+|++|++++|+|+||||||||+++|+|+.+|++|.|.+++.++..    ..++.++|++|++.+++.+|+++|
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~   79 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN   79 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            789999999999999999999999999999999999999999999999863    467789999999999999999987

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.88  E-value=6.8e-23  Score=144.20  Aligned_cols=76  Identities=42%  Similarity=0.649  Sum_probs=69.0

Q ss_pred             EEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEEee
Q psy16345         23 VFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYVLQ   98 (121)
Q Consensus        23 ~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v~Q   98 (121)
                      +++|+++.|+++++|+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++..    .+++.++|++|
T Consensus         1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q   80 (180)
T cd03214           1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ   80 (180)
T ss_pred             CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH
Confidence            46899999988889999999999999999999999999999999999999999999999998742    34567899887

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.88  E-value=2.2e-22  Score=158.87  Aligned_cols=98  Identities=33%  Similarity=0.473  Sum_probs=88.3

Q ss_pred             cEEEEeeeEEEcC--CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345         20 LELVFSGLSVTLD--KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI   93 (121)
Q Consensus        20 ~~i~~~~l~~~~~--~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i   93 (121)
                      -.+.++++++.-.  .+++++++||++.+|+.+|||||||||||||.|+|.|.++|.+|.|+++|-++.    +.+.++|
T Consensus       333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi  412 (580)
T COG4618         333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI  412 (580)
T ss_pred             ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence            4699999998763  368999999999999999999999999999999999999999999999998875    3678899


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhcccC
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSIAD  118 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~~~  118 (121)
                      ||+||+-.||+. ||.||+.-..++
T Consensus       413 GYLPQdVeLF~G-TIaeNIaRf~~~  436 (580)
T COG4618         413 GYLPQDVELFDG-TIAENIARFGEE  436 (580)
T ss_pred             CcCcccceecCC-cHHHHHHhcccc
Confidence            999999999988 999999865544

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.88  E-value=7.4e-23  Score=145.86  Aligned_cols=98  Identities=33%  Similarity=0.555  Sum_probs=90.2

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECC-EeCCh-----hhcccE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNK-ERLNK-----RWKRKI   93 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g-~~~~~-----~~~~~i   93 (121)
                      ..+.+++++++|++-.+++++||++.+||.-+|||||||||||+|.+|+|-.+|+.|+++|+| .++.+     ..+..|
T Consensus         4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI   83 (249)
T COG4674           4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI   83 (249)
T ss_pred             ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence            458999999999999999999999999999999999999999999999999999999999999 66652     456779


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhccc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      |--||.|..|..+||+||+.++..
T Consensus        84 GRKFQ~PtVfe~ltV~eNLelA~~  107 (249)
T COG4674          84 GRKFQKPTVFENLTVRENLELALN  107 (249)
T ss_pred             CccccCCeehhhccHHHHHHHHhc
Confidence            999999999999999999998764

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.87  E-value=2.3e-22  Score=160.06  Aligned_cols=95  Identities=29%  Similarity=0.401  Sum_probs=80.1

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-CccEEEECCEeCC-----hhhcccE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-DSGVIRLNKERLN-----KRWKRKI   93 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-~~G~i~~~g~~~~-----~~~~~~i   93 (121)
                      .+++++|+++.|+++.+|+++||++++|++++|+||||||||||+|+|+|+.++ ++|+|+++|+++.     ..+++++
T Consensus       259 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i  338 (490)
T PRK10938        259 PRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHI  338 (490)
T ss_pred             ceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhc
Confidence            469999999999888899999999999999999999999999999999998775 6999999997652     1245679


Q ss_pred             EEEeeCCCCCC--CCCHHHHHhh
Q psy16345         94 CYVLQQDIFFP--ELTLRQTLEV  114 (121)
Q Consensus        94 ~~v~Q~~~l~~--~ltv~e~l~~  114 (121)
                      +|++|++.++.  ..++++++.+
T Consensus       339 ~~v~q~~~~~~~~~~~~~~~~~~  361 (490)
T PRK10938        339 GYVSSSLHLDYRVSTSVRNVILS  361 (490)
T ss_pred             eEECHHHHhhcccCCcHHHHHHh
Confidence            99999876543  2467776653

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.87  E-value=1.8e-22  Score=146.56  Aligned_cols=87  Identities=33%  Similarity=0.342  Sum_probs=75.0

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDI  101 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~  101 (121)
                      +.+++++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|+++..        ..+...
T Consensus        23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~--------~~~~~~   94 (224)
T cd03220          23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL--------LGLGGG   94 (224)
T ss_pred             hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh--------hccccc
Confidence            778999999999999999999999999999999999999999999999999999999999987531        111234


Q ss_pred             CCCCCCHHHHHhhcc
Q psy16345        102 FFPELTLRQTLEVSI  116 (121)
Q Consensus       102 l~~~ltv~e~l~~~~  116 (121)
                      +++.+|++||+.+..
T Consensus        95 ~~~~~tv~enl~~~~  109 (224)
T cd03220          95 FNPELTGRENIYLNG  109 (224)
T ss_pred             CCCCCcHHHHHHHHH
Confidence            556789999998653

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.87  E-value=3.2e-22  Score=159.70  Aligned_cols=91  Identities=25%  Similarity=0.437  Sum_probs=80.4

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKIC   94 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~   94 (121)
                      ..++++|+++     .+++++||+|.+|++++|+||||||||||+|+|+|+++|++|+|.++|+++..     .+++.++
T Consensus       256 ~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~  330 (501)
T PRK10762        256 VRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV  330 (501)
T ss_pred             cEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE
Confidence            3589999985     47999999999999999999999999999999999999999999999988742     2456799


Q ss_pred             EEeeCC---CCCCCCCHHHHHhhc
Q psy16345         95 YVLQQD---IFFPELTLRQTLEVS  115 (121)
Q Consensus        95 ~v~Q~~---~l~~~ltv~e~l~~~  115 (121)
                      ||+|++   .+++.+|++||+.+.
T Consensus       331 ~v~q~~~~~~~~~~~tv~e~l~~~  354 (501)
T PRK10762        331 YISEDRKRDGLVLGMSVKENMSLT  354 (501)
T ss_pred             EecCccccCCCcCCCcHHHHhhhh
Confidence            999996   477889999999864

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.87  E-value=6.4e-22  Score=162.67  Aligned_cols=88  Identities=25%  Similarity=0.386  Sum_probs=80.4

Q ss_pred             EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345         21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ   99 (121)
Q Consensus        21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~   99 (121)
                      .++++|+++.|+ ++++|+++||++++|++++|+||||||||||+|+|+|+++|++|+|.+++       +++++||+|+
T Consensus       451 ~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-------~~~i~~v~Q~  523 (659)
T TIGR00954       451 GIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-------KGKLFYVPQR  523 (659)
T ss_pred             eEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-------CCcEEEECCC
Confidence            599999999995 56799999999999999999999999999999999999999999998763       4579999999


Q ss_pred             CCCCCCCCHHHHHhhcc
Q psy16345        100 DIFFPELTLRQTLEVSI  116 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~~  116 (121)
                      +.+++. |++||+.++.
T Consensus       524 ~~l~~~-tv~eni~~~~  539 (659)
T TIGR00954       524 PYMTLG-TLRDQIIYPD  539 (659)
T ss_pred             CCCCCc-CHHHHHhcCC
Confidence            998887 9999999864

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.87  E-value=6.8e-22  Score=135.01  Aligned_cols=70  Identities=34%  Similarity=0.604  Sum_probs=64.1

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ   98 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q   98 (121)
                      ++++++++.|++.++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.       +.++|++|
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-------~~i~~~~~   70 (144)
T cd03221           1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-------VKIGYFEQ   70 (144)
T ss_pred             CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-------EEEEEEcc
Confidence            46899999998888999999999999999999999999999999999999999999999984       35777776

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=6.3e-22  Score=143.57  Aligned_cols=97  Identities=31%  Similarity=0.474  Sum_probs=87.5

Q ss_pred             cEEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC--CCCccEEEECCEeCC-----hhhcc
Q psy16345         20 LELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV--KLDSGVIRLNKERLN-----KRWKR   91 (121)
Q Consensus        20 ~~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~--~~~~G~i~~~g~~~~-----~~~~~   91 (121)
                      .+++++||.++..+ +.+|+++||+|++||+.+|+||||||||||.++|+|..  .+++|+|.|+|+++.     .+.+.
T Consensus         2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~   81 (251)
T COG0396           2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA   81 (251)
T ss_pred             ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence            46999999999988 49999999999999999999999999999999999975  678999999999985     25677


Q ss_pred             cEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         92 KICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        92 ~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      .+..-||.|.-+|..++.+.+..+.
T Consensus        82 GifLafQ~P~ei~GV~~~~fLr~a~  106 (251)
T COG0396          82 GIFLAFQYPVEIPGVTNSDFLRAAM  106 (251)
T ss_pred             CCEEeecCCccCCCeeHHHHHHHHH
Confidence            8999999999999999998887655

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.87  E-value=5.1e-22  Score=144.41  Aligned_cols=80  Identities=29%  Similarity=0.395  Sum_probs=69.8

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC----CccEEEECCEeCCh-hh-cccEEEEeeCCC--CCCCCC
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL----DSGVIRLNKERLNK-RW-KRKICYVLQQDI--FFPELT  107 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~----~~G~i~~~g~~~~~-~~-~~~i~~v~Q~~~--l~~~lt  107 (121)
                      +++++||+|++|++++|+||||||||||+|+|+|+++|    ++|+|.++|+++.. .. ++.++|++|++.  +++.+|
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t   80 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT   80 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence            57899999999999999999999999999999999998    89999999998753 22 357999999985  556789


Q ss_pred             HHHHHhhc
Q psy16345        108 LRQTLEVS  115 (121)
Q Consensus       108 v~e~l~~~  115 (121)
                      +++|+.+.
T Consensus        81 ~~~~~~~~   88 (230)
T TIGR02770        81 MGNHAIET   88 (230)
T ss_pred             HHHHHHHH
Confidence            99988653

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.86  E-value=2.1e-22  Score=147.14  Aligned_cols=98  Identities=32%  Similarity=0.418  Sum_probs=85.0

Q ss_pred             ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-----hhhcccE
Q psy16345         19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-----KRWKRKI   93 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-----~~~~~~i   93 (121)
                      +..|+++|+++.|+++++|+++|++|++||.++|+|||||||||||++++|.++|++|.+.+.|+...     .++|++|
T Consensus        29 ~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~I  108 (257)
T COG1119          29 EPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRI  108 (257)
T ss_pred             cceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHh
Confidence            35699999999999999999999999999999999999999999999999999999999999998874     3688999


Q ss_pred             EEEeeCC--CCCCCCCHHHHHhhcc
Q psy16345         94 CYVLQQD--IFFPELTLRQTLEVSI  116 (121)
Q Consensus        94 ~~v~Q~~--~l~~~ltv~e~l~~~~  116 (121)
                      |||.-.-  .+.+..+++|.++.+.
T Consensus       109 G~vS~~L~~~~~~~~~v~dvVlSg~  133 (257)
T COG1119         109 GLVSSELHERFRVRETVRDVVLSGF  133 (257)
T ss_pred             CccCHHHHhhcccccccceeeeecc
Confidence            9998542  3445567777776543

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.86  E-value=6.3e-22  Score=158.05  Aligned_cols=91  Identities=20%  Similarity=0.380  Sum_probs=80.0

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~   95 (121)
                      .++++++++.    .+++++||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|+++..     ..++.++|
T Consensus       257 ~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~  332 (501)
T PRK11288        257 RLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIML  332 (501)
T ss_pred             EEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEE
Confidence            5888999842    58999999999999999999999999999999999999999999999988641     23567999


Q ss_pred             EeeCC---CCCCCCCHHHHHhhc
Q psy16345         96 VLQQD---IFFPELTLRQTLEVS  115 (121)
Q Consensus        96 v~Q~~---~l~~~ltv~e~l~~~  115 (121)
                      ++|++   .+++.+|++||+.++
T Consensus       333 ~~q~~~~~~~~~~~tv~e~l~~~  355 (501)
T PRK11288        333 CPEDRKAEGIIPVHSVADNINIS  355 (501)
T ss_pred             cCcCHhhCCCcCCCCHHHHhccc
Confidence            99996   378889999998764

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.86  E-value=1.2e-21  Score=160.02  Aligned_cols=84  Identities=50%  Similarity=0.741  Sum_probs=77.2

Q ss_pred             CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC---ccEEEECCEeCC-hhhcccEEEEeeCCCCCCCCCH
Q psy16345         33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD---SGVIRLNKERLN-KRWKRKICYVLQQDIFFPELTL  108 (121)
Q Consensus        33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~-~~~~~~i~~v~Q~~~l~~~ltv  108 (121)
                      ++++|+|+|+++++||+++|+|||||||||||++|+|..++.   +|+|.++|.++. ..+++.++||+|++.+++.+||
T Consensus        37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV  116 (617)
T TIGR00955        37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV  116 (617)
T ss_pred             ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence            578999999999999999999999999999999999998874   799999999986 3567789999999999999999


Q ss_pred             HHHHhhcc
Q psy16345        109 RQTLEVSI  116 (121)
Q Consensus       109 ~e~l~~~~  116 (121)
                      +||+.|+.
T Consensus       117 ~e~l~f~~  124 (617)
T TIGR00955       117 REHLMFQA  124 (617)
T ss_pred             HHHHHHHH
Confidence            99999865

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.86  E-value=5.5e-22  Score=138.40  Aligned_cols=95  Identities=26%  Similarity=0.450  Sum_probs=87.1

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----------hhhc
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----------KRWK   90 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----------~~~~   90 (121)
                      .|+++++++.||...+|.||+|+.++|+.+.++||||||||||+|.|.-+.-|.+|+..+-+...+          .++|
T Consensus         2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr   81 (242)
T COG4161           2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR   81 (242)
T ss_pred             ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence            488999999999999999999999999999999999999999999999999999999998776542          2578


Q ss_pred             ccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         91 RKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        91 ~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +.+|+|||+.+++|++||.||+..+
T Consensus        82 ~~vgmvfqqy~lwphltv~enliea  106 (242)
T COG4161          82 RNVGMVFQQYNLWPHLTVQENLIEA  106 (242)
T ss_pred             HhhhhhhhhhccCchhHHHHHHHhh
Confidence            8999999999999999999998754

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2.8e-21  Score=158.42  Aligned_cols=84  Identities=25%  Similarity=0.487  Sum_probs=71.9

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD  100 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~  100 (121)
                      +|+++|++++|+++.+|+++||+|.+|+++||+||||||||||||+|+|+++|++|+|.+++..       .++|++|++
T Consensus         1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-------~i~~~~q~~   73 (638)
T PRK10636          1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-------QLAWVNQET   73 (638)
T ss_pred             CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-------EEEEEecCC
Confidence            3789999999999999999999999999999999999999999999999999999999998732       488998864


Q ss_pred             CCCCCCCHHHHH
Q psy16345        101 IFFPELTLRQTL  112 (121)
Q Consensus       101 ~l~~~ltv~e~l  112 (121)
                      ..+ ..++.+++
T Consensus        74 ~~~-~~~~~~~v   84 (638)
T PRK10636         74 PAL-PQPALEYV   84 (638)
T ss_pred             CCC-CCCHHHHH
Confidence            333 23555544

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.86  E-value=7.5e-22  Score=140.00  Aligned_cols=96  Identities=31%  Similarity=0.441  Sum_probs=81.6

Q ss_pred             EEEEeeeEEEcCC---------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----h
Q psy16345         21 ELVFSGLSVTLDK---------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----K   87 (121)
Q Consensus        21 ~i~~~~l~~~~~~---------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~   87 (121)
                      .++++|+++.|..         ..+++.|||++++|+.+|+||.||||||||.|+|+|+++|++|+|.+||+++.    .
T Consensus         4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~   83 (267)
T COG4167           4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS   83 (267)
T ss_pred             hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence            3788999888742         24899999999999999999999999999999999999999999999999985    2


Q ss_pred             hhcccEEEEeeCCC--CCCCCCHHHHHhhcc
Q psy16345         88 RWKRKICYVLQQDI--FFPELTLRQTLEVSI  116 (121)
Q Consensus        88 ~~~~~i~~v~Q~~~--l~~~ltv~e~l~~~~  116 (121)
                      .+.++|-++||||+  +.|.+.+-..+...+
T Consensus        84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL  114 (267)
T COG4167          84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPL  114 (267)
T ss_pred             hhhhheeeeecCCccccChhhhhhhHhcchh
Confidence            35667999999986  677777766665544

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.85  E-value=2.4e-21  Score=155.65  Aligned_cols=91  Identities=32%  Similarity=0.511  Sum_probs=83.3

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ   99 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~   99 (121)
                      .+|.++++++.|+++++|+++||++.+|+.+||||+||||||||||+|+|.+.|++|+|.....       .+++|+.|+
T Consensus         2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-------~~v~~l~Q~   74 (530)
T COG0488           2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-------LRVGYLSQE   74 (530)
T ss_pred             ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-------ceEEEeCCC
Confidence            3689999999999999999999999999999999999999999999999999999999987632       369999999


Q ss_pred             CCCCCCCCHHHHHhhccc
Q psy16345        100 DIFFPELTLRQTLEVSIA  117 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~~~  117 (121)
                      +.+.+..||.+.+..+..
T Consensus        75 ~~~~~~~tv~~~v~~~~~   92 (530)
T COG0488          75 PPLDPEKTVLDYVIEGFG   92 (530)
T ss_pred             CCcCCCccHHHHHHhhhH
Confidence            999988899999887653

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2e-21  Score=154.70  Aligned_cols=90  Identities=22%  Similarity=0.359  Sum_probs=78.5

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKIC   94 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~   94 (121)
                      .+|+++|+++.+  +.+|+++||++++|+++||+|+||||||||+|+|+|+.+|++|+|.++|+++..     .+++.++
T Consensus       249 ~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~  326 (491)
T PRK10982        249 VILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA  326 (491)
T ss_pred             cEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence            469999999874  469999999999999999999999999999999999999999999999988742     2356699


Q ss_pred             EEeeCC---CCCCCCCHHHH
Q psy16345         95 YVLQQD---IFFPELTLRQT  111 (121)
Q Consensus        95 ~v~Q~~---~l~~~ltv~e~  111 (121)
                      |++|++   .+++++++.+|
T Consensus       327 ~~~q~~~~~~~~~~~~~~~~  346 (491)
T PRK10982        327 LVTEERRSTGIYAYLDIGFN  346 (491)
T ss_pred             EcCCchhhCCcccCCcHHHh
Confidence            999985   46788887766

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.85  E-value=1.1e-20  Score=140.62  Aligned_cols=87  Identities=21%  Similarity=0.292  Sum_probs=74.2

Q ss_pred             cEEEEeeeEEEcC--------------------CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEE
Q psy16345         20 LELVFSGLSVTLD--------------------KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR   79 (121)
Q Consensus        20 ~~i~~~~l~~~~~--------------------~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~   79 (121)
                      +.++++||++.|.                    .+++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~   82 (264)
T PRK13546          3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD   82 (264)
T ss_pred             ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence            4577788776652                    13489999999999999999999999999999999999999999999


Q ss_pred             ECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         80 LNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        80 ~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ++|.         +++++|.+.+.+.+|+++|+.+.
T Consensus        83 ~~g~---------~~~~~~~~~~~~~~tv~enl~~~  109 (264)
T PRK13546         83 RNGE---------VSVIAISAGLSGQLTGIENIEFK  109 (264)
T ss_pred             ECCE---------EeEEecccCCCCCCcHHHHHHHH
Confidence            9874         45777877777888999999764

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.85  E-value=5.1e-22  Score=143.25  Aligned_cols=96  Identities=29%  Similarity=0.482  Sum_probs=83.3

Q ss_pred             EEEeeeEEEcC-----CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhccc
Q psy16345         22 LVFSGLSVTLD-----KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRK   92 (121)
Q Consensus        22 i~~~~l~~~~~-----~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~   92 (121)
                      +++.|+.+.|.     .+++|+++|++|++|+++.|+|.||||||||+++|+|-+.|++|+|.++|.++++    .+...
T Consensus         2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~   81 (263)
T COG1101           2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL   81 (263)
T ss_pred             cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhH
Confidence            45667666653     3689999999999999999999999999999999999999999999999999974    34556


Q ss_pred             EEEEeeCCC--CCCCCCHHHHHhhccc
Q psy16345         93 ICYVLQQDI--FFPELTLRQTLEVSIA  117 (121)
Q Consensus        93 i~~v~Q~~~--l~~~ltv~e~l~~~~~  117 (121)
                      ++-|||+|.  .++.+|++||+.+...
T Consensus        82 larVfQdp~~gt~~~lTieENl~la~~  108 (263)
T COG1101          82 LARVFQDPLAGTAPELTIEENLALAES  108 (263)
T ss_pred             HHHHhcchhhCCcccccHHHHHHHHHh
Confidence            888999985  7899999999987653

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=7.3e-21  Score=155.99  Aligned_cols=87  Identities=30%  Similarity=0.404  Sum_probs=76.7

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ   99 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~   99 (121)
                      .+|+++|+++.|+++.+|+++||+|.+|+++||+||||||||||||+|+|+++|++|+|.+++.       ..++|++|+
T Consensus       311 ~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------~~igy~~Q~  383 (638)
T PRK10636        311 PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-------IKLGYFAQH  383 (638)
T ss_pred             ceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-------EEEEEecCc
Confidence            3699999999999889999999999999999999999999999999999999999999999742       269999997


Q ss_pred             C--CCCCCCCHHHHHh
Q psy16345        100 D--IFFPELTLRQTLE  113 (121)
Q Consensus       100 ~--~l~~~ltv~e~l~  113 (121)
                      .  .+.+..++.+++.
T Consensus       384 ~~~~l~~~~~~~~~~~  399 (638)
T PRK10636        384 QLEFLRADESPLQHLA  399 (638)
T ss_pred             chhhCCccchHHHHHH
Confidence            4  3556668887764

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.85  E-value=1.3e-21  Score=145.80  Aligned_cols=83  Identities=36%  Similarity=0.536  Sum_probs=74.4

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hhcccEEEEeeCCCCCCCCC
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RWKRKICYVLQQDIFFPELT  107 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~~~~i~~v~Q~~~l~~~lt  107 (121)
                      .-=+++|+++.-.++||.|+||||||||+|+|+|+.+|++|.|.++|+.+.+        .-+|+|||||||..|||++|
T Consensus        13 ~~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t   92 (352)
T COG4148          13 FALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT   92 (352)
T ss_pred             eEEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence            3457889988878999999999999999999999999999999999988741        34778999999999999999


Q ss_pred             HHHHHhhcccC
Q psy16345        108 LRQTLEVSIAD  118 (121)
Q Consensus       108 v~e~l~~~~~~  118 (121)
                      |+.|+.|+...
T Consensus        93 VrgNL~YG~~~  103 (352)
T COG4148          93 VRGNLRYGMWK  103 (352)
T ss_pred             Eecchhhhhcc
Confidence            99999998753

>PLN03140 ABC transporter G family member; Provisional

Probab=99.85  E-value=8.1e-21  Score=166.31  Aligned_cols=97  Identities=37%  Similarity=0.574  Sum_probs=85.0

Q ss_pred             cEEEEeeeEEEcC-------------CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC--CccEEEECCEe
Q psy16345         20 LELVFSGLSVTLD-------------KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL--DSGVIRLNKER   84 (121)
Q Consensus        20 ~~i~~~~l~~~~~-------------~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~   84 (121)
                      ..+.++||++.+.             ++.+|+++|+++++|++++|+|||||||||||++|+|..++  .+|+|.++|.+
T Consensus       866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~  945 (1470)
T PLN03140        866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP  945 (1470)
T ss_pred             ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence            3689999998862             24799999999999999999999999999999999998763  68999999988


Q ss_pred             CCh-hhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         85 LNK-RWKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        85 ~~~-~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ... ..++.++||+|++.+++.+||+||+.++.
T Consensus       946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a  978 (1470)
T PLN03140        946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSA  978 (1470)
T ss_pred             CChHHhhhheEEEccccccCCCCcHHHHHHHHH
Confidence            753 45677999999999999999999998853

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.84  E-value=1.1e-20  Score=154.78  Aligned_cols=85  Identities=24%  Similarity=0.348  Sum_probs=71.4

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD  100 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~  100 (121)
                      +|+++|+++.|+++++|+++||+|.+|+++||+||||||||||||+|+|+++|++|+|.+++..       .++|++|.+
T Consensus         3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-------~~~~l~q~~   75 (635)
T PRK11147          3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-------IVARLQQDP   75 (635)
T ss_pred             EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-------EEEEeccCC
Confidence            5999999999998899999999999999999999999999999999999999999999997631       367777765


Q ss_pred             CCCCCCCHHHHH
Q psy16345        101 IFFPELTLRQTL  112 (121)
Q Consensus       101 ~l~~~ltv~e~l  112 (121)
                      ......++.+++
T Consensus        76 ~~~~~~~v~~~~   87 (635)
T PRK11147         76 PRNVEGTVYDFV   87 (635)
T ss_pred             CCCCCCCHHHHH
Confidence            332233555543

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.84  E-value=1.3e-20  Score=129.73  Aligned_cols=75  Identities=40%  Similarity=0.639  Sum_probs=68.7

Q ss_pred             EeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEEee
Q psy16345         24 FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYVLQ   98 (121)
Q Consensus        24 ~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v~Q   98 (121)
                      ++++++.|.++.++++++|++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..    .+++.++|++|
T Consensus         2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q   80 (157)
T cd00267           2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ   80 (157)
T ss_pred             eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence            5789999988889999999999999999999999999999999999999999999999987642    45677999998

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.84  E-value=5.8e-21  Score=152.93  Aligned_cols=90  Identities=26%  Similarity=0.370  Sum_probs=78.4

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKIC   94 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~   94 (121)
                      .+++++|+++     .+|+++||++++|+++||+||||||||||+|+|+|+++|++|+|.++|+++..     .+++.++
T Consensus       267 ~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~  341 (510)
T PRK15439        267 PVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV  341 (510)
T ss_pred             ceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcE
Confidence            3699999984     26999999999999999999999999999999999999999999999988742     2346799


Q ss_pred             EEeeCC---CCCCCCCHHHHHhh
Q psy16345         95 YVLQQD---IFFPELTLRQTLEV  114 (121)
Q Consensus        95 ~v~Q~~---~l~~~ltv~e~l~~  114 (121)
                      |++|++   .+++.+|+.+|+..
T Consensus       342 ~v~q~~~~~~l~~~~t~~~~l~~  364 (510)
T PRK15439        342 YLPEDRQSSGLYLDAPLAWNVCA  364 (510)
T ss_pred             ECCCChhhCCccCCCcHHHHHHh
Confidence            999985   47888899999853

>PRK13409 putative ATPase RIL; Provisional

Probab=99.84  E-value=1e-20  Score=154.05  Aligned_cols=86  Identities=29%  Similarity=0.342  Sum_probs=78.8

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ   99 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~   99 (121)
                      .+++++|+++.|++. .|+++||+|.+||+++|+||||||||||+|+|+|+++|++|+|.++         ..++|++|+
T Consensus       339 ~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---------~~i~y~~Q~  408 (590)
T PRK13409        339 TLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---------LKISYKPQY  408 (590)
T ss_pred             eEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---------eeEEEeccc
Confidence            469999999999764 5999999999999999999999999999999999999999999885         259999999


Q ss_pred             CCCCCCCCHHHHHhhc
Q psy16345        100 DIFFPELTLRQTLEVS  115 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~  115 (121)
                      +.+++.+||+||+.+.
T Consensus       409 ~~~~~~~tv~e~l~~~  424 (590)
T PRK13409        409 IKPDYDGTVEDLLRSI  424 (590)
T ss_pred             ccCCCCCcHHHHHHHH
Confidence            8888889999999875

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.84  E-value=1.6e-20  Score=141.60  Aligned_cols=95  Identities=25%  Similarity=0.402  Sum_probs=80.9

Q ss_pred             EEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-C----CccEEEECCEeCC---h--
Q psy16345         22 LVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-L----DSGVIRLNKERLN---K--   87 (121)
Q Consensus        22 i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-~----~~G~i~~~g~~~~---~--   87 (121)
                      ++++||+..|..    ..++++|||++++||++||||+|||||||+.+.|+|+++ +    .+|+|.|+|+++.   .  
T Consensus         2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~   81 (316)
T COG0444           2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE   81 (316)
T ss_pred             ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence            688999999853    369999999999999999999999999999999999997 3    5699999999763   1  


Q ss_pred             ---hhcccEEEEeeCCC--CCCCCCHHHHHhhcc
Q psy16345         88 ---RWKRKICYVLQQDI--FFPELTLRQTLEVSI  116 (121)
Q Consensus        88 ---~~~~~i~~v~Q~~~--l~~~ltv~e~l~~~~  116 (121)
                         .+.+.|+|+||++.  |.|-+++.+.+.-..
T Consensus        82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l  115 (316)
T COG0444          82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVL  115 (316)
T ss_pred             HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHH
Confidence               13457999999984  888899988876544

>KOG0054|consensus

Probab=99.84  E-value=8.1e-21  Score=163.86  Aligned_cols=93  Identities=27%  Similarity=0.469  Sum_probs=87.4

Q ss_pred             cEEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345         20 LELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI   93 (121)
Q Consensus        20 ~~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i   93 (121)
                      -.|+++|++.+|..  ..+|++|||+|++||.+||||+.|||||||+.+|.++..|.+|+|.+||.++.    .++|+++
T Consensus      1137 G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrl 1216 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRL 1216 (1381)
T ss_pred             CeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcC
Confidence            35999999999965  47999999999999999999999999999999999999999999999999997    4799999


Q ss_pred             EEEeeCCCCCCCCCHHHHHh
Q psy16345         94 CYVLQQDIFFPELTLRQTLE  113 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~  113 (121)
                      +.+||||.+|.. |+|.||.
T Consensus      1217 sIIPQdPvLFsG-TvR~NLD 1235 (1381)
T KOG0054|consen 1217 SIIPQDPVLFSG-TVRFNLD 1235 (1381)
T ss_pred             eeeCCCCceecC-ccccccC
Confidence            999999999987 9999986

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.84  E-value=3.4e-20  Score=148.61  Aligned_cols=86  Identities=22%  Similarity=0.279  Sum_probs=74.4

Q ss_pred             EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEe
Q psy16345         21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVL   97 (121)
Q Consensus        21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~   97 (121)
                      +++++|+++.|++   +++|+++||+|++|+++||+|+|||||||||++|+|+++|++|+|.++|.+.         ++.
T Consensus        21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~---------~i~   91 (549)
T PRK13545         21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA---------LIA   91 (549)
T ss_pred             eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee---------eEE
Confidence            5899999999976   4699999999999999999999999999999999999999999999998652         223


Q ss_pred             eCCCCCCCCCHHHHHhhc
Q psy16345         98 QQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        98 Q~~~l~~~ltv~e~l~~~  115 (121)
                      +.+.+++.+|++||+.+.
T Consensus        92 ~~~~l~~~lTV~EnL~l~  109 (549)
T PRK13545         92 ISSGLNGQLTGIENIELK  109 (549)
T ss_pred             eccccCCCCcHHHHHHhh
Confidence            344566778999998763

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.84  E-value=6.9e-21  Score=139.09  Aligned_cols=73  Identities=33%  Similarity=0.443  Sum_probs=62.7

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee-CCCCCCCCCHHHHH
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ-QDIFFPELTLRQTL  112 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q-~~~l~~~ltv~e~l  112 (121)
                      .++|+||||++++||.+||||+||||||||||+|+|.++|++|+|.++|+-         +++.. ...+.|++|.+||+
T Consensus        40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v---------~~li~lg~Gf~pelTGreNi  110 (249)
T COG1134          40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV---------APLIELGAGFDPELTGRENI  110 (249)
T ss_pred             EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE---------ehhhhcccCCCcccchHHHH
Confidence            468999999999999999999999999999999999999999999999854         33322 23467889999998


Q ss_pred             hhc
Q psy16345        113 EVS  115 (121)
Q Consensus       113 ~~~  115 (121)
                      .+-
T Consensus       111 ~l~  113 (249)
T COG1134         111 YLR  113 (249)
T ss_pred             HHH
Confidence            863

>KOG0061|consensus

Probab=99.83  E-value=2.7e-20  Score=152.08  Aligned_cols=98  Identities=50%  Similarity=0.787  Sum_probs=86.9

Q ss_pred             ccEEEEeeeEEEcC-----CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC---CccEEEECCEeCC-hhh
Q psy16345         19 PLELVFSGLSVTLD-----KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL---DSGVIRLNKERLN-KRW   89 (121)
Q Consensus        19 ~~~i~~~~l~~~~~-----~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~---~~G~i~~~g~~~~-~~~   89 (121)
                      .+.+.+++++....     .+++|++||..+++||++||+|||||||||||++|+|....   .+|+|.+||++.. +.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~  102 (613)
T KOG0061|consen   23 PVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSF  102 (613)
T ss_pred             cceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhh
Confidence            45688888887763     36899999999999999999999999999999999998764   6899999997765 467


Q ss_pred             cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         90 KRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++..|||.||+.+++.+||+|++.+.+
T Consensus       103 ~~~s~yV~QdD~l~~~LTV~EtL~f~A  129 (613)
T KOG0061|consen  103 RKISGYVQQDDVLLPTLTVRETLRFSA  129 (613)
T ss_pred             hheeEEEcccccccccccHHHHHHHHH
Confidence            888999999999999999999999876

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.83  E-value=2.3e-20  Score=164.21  Aligned_cols=86  Identities=26%  Similarity=0.454  Sum_probs=79.9

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ   98 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q   98 (121)
                      .++++|+++.|++  +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|         +++||+|
T Consensus       636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------~i~yv~Q  706 (1522)
T TIGR00957       636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---------SVAYVPQ  706 (1522)
T ss_pred             cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC---------EEEEEcC
Confidence            5999999999964  5799999999999999999999999999999999999999999999986         5999999


Q ss_pred             CCCCCCCCCHHHHHhhcc
Q psy16345         99 QDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.+++ .|++||+.++.
T Consensus       707 ~~~l~~-~Ti~eNI~~g~  723 (1522)
T TIGR00957       707 QAWIQN-DSLRENILFGK  723 (1522)
T ss_pred             CccccC-CcHHHHhhcCC
Confidence            998875 59999999875

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03130 ABC transporter C family member; Provisional

Probab=99.83  E-value=1.3e-20  Score=166.27  Aligned_cols=87  Identities=25%  Similarity=0.444  Sum_probs=80.3

Q ss_pred             EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc-cEEEECCEeCChhhcccEEEE
Q psy16345         21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS-GVIRLNKERLNKRWKRKICYV   96 (121)
Q Consensus        21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~-G~i~~~g~~~~~~~~~~i~~v   96 (121)
                      .++++|++|.|+.   +++|+|+||++++|+.++|+||+|||||||+++|+|+++|.+ |+|.+         +.+++||
T Consensus       614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l---------~~~Iayv  684 (1622)
T PLN03130        614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI---------RGTVAYV  684 (1622)
T ss_pred             ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE---------cCeEEEE
Confidence            5999999999963   579999999999999999999999999999999999999999 89985         3579999


Q ss_pred             eeCCCCCCCCCHHHHHhhccc
Q psy16345         97 LQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      +|++.+|.. |++||+.|+.+
T Consensus       685 ~Q~p~Lfng-TIreNI~fg~~  704 (1622)
T PLN03130        685 PQVSWIFNA-TVRDNILFGSP  704 (1622)
T ss_pred             cCccccCCC-CHHHHHhCCCc
Confidence            999999976 99999999875

>PLN03232 ABC transporter C family member; Provisional

Probab=99.83  E-value=1.3e-20  Score=165.52  Aligned_cols=88  Identities=23%  Similarity=0.384  Sum_probs=79.6

Q ss_pred             EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEe
Q psy16345         21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVL   97 (121)
Q Consensus        21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~   97 (121)
                      .++++|++|.|+.   +++|+|+||++++|+.++|+||+|||||||+++|+|+++|.+|.+.        .+++.++||+
T Consensus       614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--------~~~~~Iayv~  685 (1495)
T PLN03232        614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV--------VIRGSVAYVP  685 (1495)
T ss_pred             cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE--------EecCcEEEEc
Confidence            5999999999963   5799999999999999999999999999999999999999998763        2456899999


Q ss_pred             eCCCCCCCCCHHHHHhhccc
Q psy16345         98 QQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        98 Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      |++.+|.. |++||+.|+.+
T Consensus       686 Q~p~Lf~g-TIreNI~fg~~  704 (1495)
T PLN03232        686 QVSWIFNA-TVRENILFGSD  704 (1495)
T ss_pred             Cccccccc-cHHHHhhcCCc
Confidence            99999976 99999999864

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.83  E-value=2.1e-20  Score=131.99  Aligned_cols=68  Identities=28%  Similarity=0.347  Sum_probs=61.2

Q ss_pred             eeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCC
Q psy16345         25 SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDI  101 (121)
Q Consensus        25 ~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~  101 (121)
                      .|+++.|+++.+++++ |++++|++++|+||||||||||+|+|+|+++|++|+|.++|..        ++|++|++.
T Consensus         4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~--------i~~~~q~~~   71 (177)
T cd03222           4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT--------PVYKPQYID   71 (177)
T ss_pred             CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE--------EEEEcccCC
Confidence            6899999999999985 9999999999999999999999999999999999999999854        677777643

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=7.2e-21  Score=147.79  Aligned_cols=99  Identities=28%  Similarity=0.503  Sum_probs=91.7

Q ss_pred             EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEE
Q psy16345         21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~   95 (121)
                      .+.+.+++|.|. ++++|+++||++++|+.++++|++|+||||++|+|.+++++.+|.|.++|++++    ..+|+.||.
T Consensus       262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~  341 (497)
T COG5265         262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGI  341 (497)
T ss_pred             eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCc
Confidence            488999999995 589999999999999999999999999999999999999999999999999986    367889999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcccCcC
Q psy16345         96 VLQQDIFFPELTLRQTLEVSIADED  120 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~~~~~  120 (121)
                      ||||..||.+ |++.|+.++.++++
T Consensus       342 VPQDtvLFND-ti~yni~ygr~~at  365 (497)
T COG5265         342 VPQDTVLFND-TIAYNIKYGRPDAT  365 (497)
T ss_pred             Ccccceehhh-hHHHHHhccCcccc
Confidence            9999999987 99999999987654

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.83  E-value=2e-20  Score=135.06  Aligned_cols=73  Identities=25%  Similarity=0.300  Sum_probs=62.7

Q ss_pred             ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEE-ECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHh
Q psy16345         35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR-LNKERLNKRWKRKICYVLQQDIFFPELTLRQTLE  113 (121)
Q Consensus        35 ~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~-~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~  113 (121)
                      ++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|. +++..+         .+.+.+.+++.+|++||+.
T Consensus         1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~---------~~~~~~~l~~~ltv~enl~   71 (213)
T PRK15177          1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL---------PLGANSFILPGLTGEENAR   71 (213)
T ss_pred             CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee---------ccccccccCCcCcHHHHHH
Confidence            479999999999999999999999999999999999999999997 766432         1334567888999999998


Q ss_pred             hcc
Q psy16345        114 VSI  116 (121)
Q Consensus       114 ~~~  116 (121)
                      +..
T Consensus        72 ~~~   74 (213)
T PRK15177         72 MMA   74 (213)
T ss_pred             HHH
Confidence            753

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.83  E-value=4.9e-20  Score=147.32  Aligned_cols=95  Identities=31%  Similarity=0.477  Sum_probs=81.8

Q ss_pred             EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC----ccEEEECCEeCCh-----
Q psy16345         21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD----SGVIRLNKERLNK-----   87 (121)
Q Consensus        21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~----~G~i~~~g~~~~~-----   87 (121)
                      .++++||++.|..    .++++||||++.+||++||+|+|||||||+.++|.|++++.    +|+|.|+|+++..     
T Consensus         5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~   84 (539)
T COG1123           5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE   84 (539)
T ss_pred             eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence            5999999999853    25999999999999999999999999999999999999877    7999999987631     


Q ss_pred             ---hhcccEEEEeeCCC--CCCCCCHHHHHhhc
Q psy16345         88 ---RWKRKICYVLQQDI--FFPELTLRQTLEVS  115 (121)
Q Consensus        88 ---~~~~~i~~v~Q~~~--l~~~ltv~e~l~~~  115 (121)
                         .+.+.|+|+||++.  |.|-+|+.+.+.-.
T Consensus        85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~  117 (539)
T COG1123          85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREA  117 (539)
T ss_pred             HHHhccccEEEEecCchhhcCchhhHHHHHHHH
Confidence               24567999999985  77778888877643

>PLN03140 ABC transporter G family member; Provisional

Probab=99.83  E-value=2e-20  Score=163.85  Aligned_cols=83  Identities=40%  Similarity=0.632  Sum_probs=76.0

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC---ccEEEECCEeCCh-hhcccEEEEeeCCCCCCCCCHH
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD---SGVIRLNKERLNK-RWKRKICYVLQQDIFFPELTLR  109 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~-~~~~~i~~v~Q~~~l~~~ltv~  109 (121)
                      +.+|+|+|+.+++|++++|+||||||||||||+|+|+++|+   +|+|.++|.++.+ ..++.++||+|++.+++.+||+
T Consensus       178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~  257 (1470)
T PLN03140        178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK  257 (1470)
T ss_pred             ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence            56899999999999999999999999999999999999988   9999999998753 3366799999999999999999


Q ss_pred             HHHhhcc
Q psy16345        110 QTLEVSI  116 (121)
Q Consensus       110 e~l~~~~  116 (121)
                      |++.|+.
T Consensus       258 EtL~f~a  264 (1470)
T PLN03140        258 ETLDFSA  264 (1470)
T ss_pred             HHHHHHH
Confidence            9999864

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.82  E-value=4.4e-20  Score=136.04  Aligned_cols=73  Identities=32%  Similarity=0.418  Sum_probs=63.5

Q ss_pred             ceEEeeEEEEe-----CCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHH
Q psy16345         35 PILKDVSGVVK-----PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLR  109 (121)
Q Consensus        35 ~~l~~vsl~i~-----~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~  109 (121)
                      ..+.+++|++.     +|++++|+||||||||||+++|+|+++|++|+|.++|.        .++|++|++.+++.+|++
T Consensus         8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~--------~i~~~~q~~~~~~~~tv~   79 (246)
T cd03237           8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD--------TVSYKPQYIKADYEGTVR   79 (246)
T ss_pred             cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc--------eEEEecccccCCCCCCHH
Confidence            35666666665     79999999999999999999999999999999999874        589999998877778999


Q ss_pred             HHHhhc
Q psy16345        110 QTLEVS  115 (121)
Q Consensus       110 e~l~~~  115 (121)
                      |++.+.
T Consensus        80 e~l~~~   85 (246)
T cd03237          80 DLLSSI   85 (246)
T ss_pred             HHHHHH
Confidence            998754

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PLN03073 ABC transporter F family; Provisional

Probab=99.82  E-value=9.3e-20  Score=151.09  Aligned_cols=83  Identities=23%  Similarity=0.368  Sum_probs=71.3

Q ss_pred             cEEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345         20 LELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ   98 (121)
Q Consensus        20 ~~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q   98 (121)
                      .+++++|+++.|++ +.+|+++||+|.+|++++|+||||||||||||+|+|+++|++|+|.+++       +.+++|++|
T Consensus       507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-------~~~igyv~Q  579 (718)
T PLN03073        507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-------KVRMAVFSQ  579 (718)
T ss_pred             ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-------ceeEEEEec
Confidence            46999999999964 5699999999999999999999999999999999999999999999865       246999999


Q ss_pred             CCCCCCCCCHHHH
Q psy16345         99 QDIFFPELTLRQT  111 (121)
Q Consensus        99 ~~~l~~~ltv~e~  111 (121)
                      ++.  ..+++.++
T Consensus       580 ~~~--~~l~~~~~  590 (718)
T PLN03073        580 HHV--DGLDLSSN  590 (718)
T ss_pred             ccc--ccCCcchh
Confidence            852  33445444

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.82  E-value=4.1e-20  Score=134.02  Aligned_cols=73  Identities=32%  Similarity=0.471  Sum_probs=63.7

Q ss_pred             EEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCC--CCCCHHHHHhhc
Q psy16345         42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFF--PELTLRQTLEVS  115 (121)
Q Consensus        42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~--~~ltv~e~l~~~  115 (121)
                      |+|++|++++|+|+||||||||+++|+|+++|++|+|.++|+++.. .+++++|++|++.++  ..+|+++|+.++
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~   75 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSG   75 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhc
Confidence            5789999999999999999999999999999999999999987643 456799999998764  347999998765

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.81  E-value=7e-20  Score=160.15  Aligned_cols=83  Identities=34%  Similarity=0.583  Sum_probs=74.5

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC----CCCccEEEECCEeCCh---hhcccEEEEeeCCCCCCCC
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV----KLDSGVIRLNKERLNK---RWKRKICYVLQQDIFFPEL  106 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~----~~~~G~i~~~g~~~~~---~~~~~i~~v~Q~~~l~~~l  106 (121)
                      +++|+|+|+.+++||+++|+||||||||||||+|+|+.    .|.+|+|.++|.++.+   ..++.++||+|++.+++.+
T Consensus        74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l  153 (1394)
T TIGR00956        74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL  153 (1394)
T ss_pred             ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence            45999999999999999999999999999999999986    4689999999998742   3456799999999999999


Q ss_pred             CHHHHHhhcc
Q psy16345        107 TLRQTLEVSI  116 (121)
Q Consensus       107 tv~e~l~~~~  116 (121)
                      ||+|++.++.
T Consensus       154 TV~E~l~f~~  163 (1394)
T TIGR00956       154 TVGETLDFAA  163 (1394)
T ss_pred             CHHHHHHHHH
Confidence            9999999864

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.80  E-value=2.2e-19  Score=157.80  Aligned_cols=74  Identities=30%  Similarity=0.578  Sum_probs=69.1

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHh
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLE  113 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~  113 (121)
                      +++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|         .++||+|++.+++. |++||+.
T Consensus       439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g---------~iayv~Q~~~l~~~-Ti~eNI~  508 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG---------RISFSPQTSWIMPG-TIKDNII  508 (1490)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC---------EEEEEeCCCccCCc-cHHHHHH
Confidence            4689999999999999999999999999999999999999999999987         59999999999875 9999999


Q ss_pred             hccc
Q psy16345        114 VSIA  117 (121)
Q Consensus       114 ~~~~  117 (121)
                      |+..
T Consensus       509 ~g~~  512 (1490)
T TIGR01271       509 FGLS  512 (1490)
T ss_pred             hccc
Confidence            8753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.80  E-value=5.3e-20  Score=136.34  Aligned_cols=89  Identities=21%  Similarity=0.313  Sum_probs=72.4

Q ss_pred             eeeEEEcCCc-ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEE-----------ECCEeCCh---hh
Q psy16345         25 SGLSVTLDKR-PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR-----------LNKERLNK---RW   89 (121)
Q Consensus        25 ~~l~~~~~~~-~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~-----------~~g~~~~~---~~   89 (121)
                      .+++++|+.+ .+++++++ +.+|++++|+||||||||||||+|+|+++|++|+|.           ++|.++..   ..
T Consensus         4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~   82 (255)
T cd03236           4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL   82 (255)
T ss_pred             cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence            4688999765 59999994 999999999999999999999999999999999996           77777642   11


Q ss_pred             c---ccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         90 K---RKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        90 ~---~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +   ..++|++|+..+++. ++.+++.+.
T Consensus        83 ~~~~~~i~~~~~~~~~~~~-~~~~~i~~~  110 (255)
T cd03236          83 LEGDVKVIVKPQYVDLIPK-AVKGKVGEL  110 (255)
T ss_pred             hhcccceeeecchhccCch-HHHHHHHHH
Confidence            1   247899998877774 677776543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.78  E-value=1.2e-18  Score=135.31  Aligned_cols=99  Identities=25%  Similarity=0.390  Sum_probs=86.6

Q ss_pred             CccEEEEeeeEEEcCC-----------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC
Q psy16345         18 RPLELVFSGLSVTLDK-----------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN   86 (121)
Q Consensus        18 ~~~~i~~~~l~~~~~~-----------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~   86 (121)
                      .++.++.+++++.|.-           -.+++++||++++|+.+||+|+||||||||-++|.+++++. |+|.|.|+++.
T Consensus       273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~  351 (534)
T COG4172         273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDID  351 (534)
T ss_pred             CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccc
Confidence            3556999999988731           25899999999999999999999999999999999999876 99999999986


Q ss_pred             h-------hhcccEEEEeeCCC--CCCCCCHHHHHhhccc
Q psy16345         87 K-------RWKRKICYVLQQDI--FFPELTLRQTLEVSIA  117 (121)
Q Consensus        87 ~-------~~~~~i~~v~Q~~~--l~~~ltv~e~l~~~~~  117 (121)
                      .       .+|+++..|||||+  |.|.+||.+.+..++.
T Consensus       352 ~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~  391 (534)
T COG4172         352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLR  391 (534)
T ss_pred             ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhh
Confidence            1       46888999999996  8899999999887763

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.77  E-value=8.6e-19  Score=129.83  Aligned_cols=67  Identities=30%  Similarity=0.374  Sum_probs=61.3

Q ss_pred             cEEEEeeeEEEcCC---------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC
Q psy16345         20 LELVFSGLSVTLDK---------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN   86 (121)
Q Consensus        20 ~~i~~~~l~~~~~~---------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~   86 (121)
                      ..++++|+++.|..         ..++++|||+|++||++||||+||||||||-|+|.||++|++|+|+|+|+++.
T Consensus         3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~   78 (268)
T COG4608           3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDIT   78 (268)
T ss_pred             ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchh
Confidence            35899999999842         26899999999999999999999999999999999999999999999998863

>KOG0059|consensus

Probab=99.77  E-value=3.7e-19  Score=150.29  Aligned_cols=96  Identities=30%  Similarity=0.459  Sum_probs=88.7

Q ss_pred             EEEEeeeEEEcCCcc-eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEE
Q psy16345         21 ELVFSGLSVTLDKRP-ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~-~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~   94 (121)
                      .+.++++++.|+.+. +++++|+.+++||+.|+.|+|||||||++++|.|..+|++|++.++|.++..     +.++.+|
T Consensus       564 ~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iG  643 (885)
T KOG0059|consen  564 ALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLG  643 (885)
T ss_pred             eEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcc
Confidence            478899999998766 9999999999999999999999999999999999999999999999988852     3678899


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |+||+..+++.+|.+|++.+.+
T Consensus       644 yCPQ~d~l~~~lT~rEhL~~~a  665 (885)
T KOG0059|consen  644 YCPQFDALWEELTGREHLEFYA  665 (885)
T ss_pred             cCCchhhhhhhccHHHHHHHHH
Confidence            9999999999999999998755

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.77  E-value=9.7e-19  Score=114.18  Aligned_cols=72  Identities=22%  Similarity=0.052  Sum_probs=60.9

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEEeeCCCCCCCCCHH
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYVLQQDIFFPELTLR  109 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v~Q~~~l~~~ltv~  109 (121)
                      +.+|++++|++++|++++|+||||||||||++++.      +|++.++|.++..    ..++.++|++|+  +|.. |++
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~-ti~   72 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEI-RLR   72 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchh-hHH
Confidence            56899999999999999999999999999999986      7899999998752    345556777776  4544 999


Q ss_pred             HHHhh
Q psy16345        110 QTLEV  114 (121)
Q Consensus       110 e~l~~  114 (121)
                      ||+.+
T Consensus        73 ~Ni~~   77 (107)
T cd00820          73 LNIFL   77 (107)
T ss_pred             hhcee
Confidence            99976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.76  E-value=4.9e-18  Score=136.64  Aligned_cols=92  Identities=35%  Similarity=0.508  Sum_probs=80.3

Q ss_pred             ccEEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEe
Q psy16345         19 PLELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVL   97 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~   97 (121)
                      ...++++|+++.|++ +.+++++||.|.+|+.+||+||||+|||||||+|+|...|.+|.|.+...       -++||+.
T Consensus       319 ~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-------v~igyf~  391 (530)
T COG0488         319 KLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-------VKIGYFD  391 (530)
T ss_pred             CeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-------eEEEEEE
Confidence            345999999999965 69999999999999999999999999999999999999999999998632       3699999


Q ss_pred             eCC-CCCCCCCHHHHHhhccc
Q psy16345         98 QQD-IFFPELTLRQTLEVSIA  117 (121)
Q Consensus        98 Q~~-~l~~~ltv~e~l~~~~~  117 (121)
                      |+. .+++..|+.|++.-..+
T Consensus       392 Q~~~~l~~~~t~~d~l~~~~~  412 (530)
T COG0488         392 QHRDELDPDKTVLEELSEGFP  412 (530)
T ss_pred             ehhhhcCccCcHHHHHHhhCc
Confidence            987 45577799999887654

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.75  E-value=2e-18  Score=131.73  Aligned_cols=65  Identities=42%  Similarity=0.688  Sum_probs=58.8

Q ss_pred             EECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         52 VMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        52 liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |+||||||||||+|+|+|+++|++|+|.++|+++..  ..++.++|++|++.+|+++|++||+.++.
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~   67 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGL   67 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHH
Confidence            689999999999999999999999999999998753  34568999999999999999999999864

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PTZ00243 ABC transporter; Provisional

Probab=99.75  E-value=4.8e-18  Score=149.91  Aligned_cols=76  Identities=34%  Similarity=0.519  Sum_probs=68.9

Q ss_pred             cCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHH
Q psy16345         31 LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQ  110 (121)
Q Consensus        31 ~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e  110 (121)
                      ++++++|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+.         ++++|++|++.+++ .|++|
T Consensus       670 ~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~---------~~i~yv~Q~~~l~~-~Tv~e  739 (1560)
T PTZ00243        670 LEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE---------RSIAYVPQQAWIMN-ATVRG  739 (1560)
T ss_pred             cCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC---------CeEEEEeCCCccCC-CcHHH
Confidence            345679999999999999999999999999999999999999999999863         47999999998875 59999


Q ss_pred             HHhhcc
Q psy16345        111 TLEVSI  116 (121)
Q Consensus       111 ~l~~~~  116 (121)
                      |+.++.
T Consensus       740 nI~~~~  745 (1560)
T PTZ00243        740 NILFFD  745 (1560)
T ss_pred             HHHcCC
Confidence            999865

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.75  E-value=3.8e-19  Score=132.10  Aligned_cols=78  Identities=28%  Similarity=0.447  Sum_probs=63.6

Q ss_pred             ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEEe-eCCCCCCCCCHHH
Q psy16345         35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYVL-QQDIFFPELTLRQ  110 (121)
Q Consensus        35 ~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v~-Q~~~l~~~ltv~e  110 (121)
                      .+++|+||+|++|++++++|+|||||||+||+|+|++.|++|.|.++|...-+   +.-+++++|+ |...+++.+.+.+
T Consensus        38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d  117 (325)
T COG4586          38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD  117 (325)
T ss_pred             hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence            58999999999999999999999999999999999999999999999987532   3455677666 4445555555555


Q ss_pred             HH
Q psy16345        111 TL  112 (121)
Q Consensus       111 ~l  112 (121)
                      .+
T Consensus       118 s~  119 (325)
T COG4586         118 SL  119 (325)
T ss_pred             hH
Confidence            43

>PRK13409 putative ATPase RIL; Provisional

Probab=99.74  E-value=1.1e-18  Score=142.24  Aligned_cols=89  Identities=21%  Similarity=0.278  Sum_probs=70.3

Q ss_pred             eeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEE-----------ECCEeCCh---h-
Q psy16345         25 SGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR-----------LNKERLNK---R-   88 (121)
Q Consensus        25 ~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~-----------~~g~~~~~---~-   88 (121)
                      ++++++|+. ..+|++++ .+++|+++||+||||||||||+|+|+|+++|+.|+|.           ++|.++..   . 
T Consensus        77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~  155 (590)
T PRK13409         77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL  155 (590)
T ss_pred             cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence            448999986 46999999 8999999999999999999999999999999999997           88887642   1 


Q ss_pred             --hcccEEEEeeCCCCCCC---CCHHHHHhh
Q psy16345         89 --WKRKICYVLQQDIFFPE---LTLRQTLEV  114 (121)
Q Consensus        89 --~~~~i~~v~Q~~~l~~~---ltv~e~l~~  114 (121)
                        .+.++++.+|....++.   .|++|++..
T Consensus       156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~  186 (590)
T PRK13409        156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKK  186 (590)
T ss_pred             hccCcceeecccchhhhhhhhcchHHHHHHh
Confidence              12345666664433332   289998864

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.74  E-value=1.5e-18  Score=134.49  Aligned_cols=86  Identities=23%  Similarity=0.376  Sum_probs=77.0

Q ss_pred             EEEEeeeEEEcCCc-ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345         21 ELVFSGLSVTLDKR-PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~~-~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~   95 (121)
                      .|+++|+.|.|... .-+..||++|++||++-|+|.||||||||+++|.|+++|++|+|++||.+++.    +.|+-++-
T Consensus       322 ~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSa  401 (546)
T COG4615         322 TLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSA  401 (546)
T ss_pred             ceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHH
Confidence            59999999999764 67999999999999999999999999999999999999999999999999972    56777888


Q ss_pred             EeeCCCCCCCC
Q psy16345         96 VLQQDIFFPEL  106 (121)
Q Consensus        96 v~Q~~~l~~~l  106 (121)
                      ||.|..+|+.+
T Consensus       402 vFsDyhLF~~l  412 (546)
T COG4615         402 VFSDYHLFDQL  412 (546)
T ss_pred             HhhhHhhhHhh
Confidence            88888777653

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.72  E-value=6.3e-18  Score=119.34  Aligned_cols=81  Identities=35%  Similarity=0.502  Sum_probs=70.3

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe---CC-----h-----
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER---LN-----K-----   87 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~---~~-----~-----   87 (121)
                      .+++.++++.|+...-..+|||++.+||+.||+|+|||||||||+||++-+.|+.|+|.|..+.   ..     .     
T Consensus         6 LL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~   85 (258)
T COG4107           6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRR   85 (258)
T ss_pred             ceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHH
Confidence            4899999999999999999999999999999999999999999999999999999999986432   11     1     


Q ss_pred             hhcccEEEEeeCCC
Q psy16345         88 RWKRKICYVLQQDI  101 (121)
Q Consensus        88 ~~~~~i~~v~Q~~~  101 (121)
                      .+|..-|+|.|+|.
T Consensus        86 L~RTeWG~VhQnP~   99 (258)
T COG4107          86 LLRTEWGFVHQNPR   99 (258)
T ss_pred             HhhhccceeecCcc
Confidence            23456799999874

>KOG0054|consensus

Probab=99.72  E-value=4.3e-17  Score=141.08  Aligned_cols=90  Identities=31%  Similarity=0.467  Sum_probs=81.8

Q ss_pred             ccEEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEE
Q psy16345         19 PLELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICY   95 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~   95 (121)
                      ...++++|.++.++.   .+.|+||||+|++|+.+||+|+-|||||+||.+|.|.++..+|++.++|         .++|
T Consensus       516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g---------siaY  586 (1381)
T KOG0054|consen  516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG---------SVAY  586 (1381)
T ss_pred             CceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC---------eEEE
Confidence            345999999999854   3489999999999999999999999999999999999999999999987         4899


Q ss_pred             EeeCCCCCCCCCHHHHHhhcccC
Q psy16345         96 VLQQDIFFPELTLRQTLEVSIAD  118 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~~~  118 (121)
                      |+|+|-++.. ||+||+.||.+-
T Consensus       587 v~Q~pWI~ng-TvreNILFG~~~  608 (1381)
T KOG0054|consen  587 VPQQPWIQNG-TVRENILFGSPY  608 (1381)
T ss_pred             eccccHhhCC-cHHHhhhcCccc
Confidence            9999999876 999999999863

>PLN03073 ABC transporter F family; Provisional

Probab=99.71  E-value=3e-17  Score=136.26  Aligned_cols=66  Identities=21%  Similarity=0.300  Sum_probs=58.6

Q ss_pred             ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC---CCCccEEEECCEe
Q psy16345         19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV---KLDSGVIRLNKER   84 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~---~~~~G~i~~~g~~   84 (121)
                      ..+|+++|+++.|+++++|+++||+|.+|+++||||+||||||||||+|+|..   .|.+|+|.+.++.
T Consensus       175 ~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~  243 (718)
T PLN03073        175 IKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQE  243 (718)
T ss_pred             ceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEecc
Confidence            34699999999999888999999999999999999999999999999999864   5778999765443

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.70  E-value=1.5e-17  Score=116.93  Aligned_cols=95  Identities=32%  Similarity=0.427  Sum_probs=77.1

Q ss_pred             cEEEEeeeEEEcC-----C--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe--CC----
Q psy16345         20 LELVFSGLSVTLD-----K--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER--LN----   86 (121)
Q Consensus        20 ~~i~~~~l~~~~~-----~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~--~~----   86 (121)
                      ..+.++|++++|-     +  -++++++||+++.||+++|=||||+|||||||+|.+.+.|++|+|++.-..  ++    
T Consensus         3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a   82 (235)
T COG4778           3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA   82 (235)
T ss_pred             ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence            3588899988872     2  368999999999999999999999999999999999999999999986432  11    


Q ss_pred             --h----hhcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345         87 --K----RWKRKICYVLQQDIFFPELTLRQTLEV  114 (121)
Q Consensus        87 --~----~~~~~i~~v~Q~~~l~~~ltv~e~l~~  114 (121)
                        +    .+++-+|||.|.....|..+..|.++.
T Consensus        83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvae  116 (235)
T COG4778          83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAE  116 (235)
T ss_pred             ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHh
Confidence              1    245669999998777777776666553

>KOG0065|consensus

Probab=99.67  E-value=8.3e-17  Score=137.90  Aligned_cols=95  Identities=43%  Similarity=0.617  Sum_probs=82.4

Q ss_pred             EEEeeeEEEc----CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC--CCccEEEECCEeCC-hhhcccEE
Q psy16345         22 LVFSGLSVTL----DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK--LDSGVIRLNKERLN-KRWKRKIC   94 (121)
Q Consensus        22 i~~~~l~~~~----~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~-~~~~~~i~   94 (121)
                      ..++|+.+..    +.+++|+||+--++||..+||+|+|||||||||++|+|-..  ..+|+|.++|.+.+ ...+|.+|
T Consensus       788 ~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~G  867 (1391)
T KOG0065|consen  788 FYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSG  867 (1391)
T ss_pred             EEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccc
Confidence            4455555554    45789999999999999999999999999999999999643  46899999999998 57889999


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ||-|++...+.+||+|-|.|++
T Consensus       868 YvqQ~DiH~~~~TVrESL~fSA  889 (1391)
T KOG0065|consen  868 YVEQQDIHSPELTVRESLRFSA  889 (1391)
T ss_pred             eeecccccCcccchHHHHHHHH
Confidence            9999988779999999999876

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.67  E-value=1.2e-16  Score=112.78  Aligned_cols=60  Identities=30%  Similarity=0.269  Sum_probs=50.0

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ   98 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q   98 (121)
                      +++|+++||++++|++++|+||||||||||||+|.+    ++|++.+++.. ....+..++|++|
T Consensus         8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~-~~~~~~~~~~~~q   67 (176)
T cd03238           8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFL-PKFSRNKLIFIDQ   67 (176)
T ss_pred             eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcc-cccccccEEEEhH
Confidence            578999999999999999999999999999999863    68999998763 2222345888887

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.65  E-value=3.5e-16  Score=121.71  Aligned_cols=95  Identities=28%  Similarity=0.371  Sum_probs=80.0

Q ss_pred             EEEEeeeEEEcC----CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCC----h
Q psy16345         21 ELVFSGLSVTLD----KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLN----K   87 (121)
Q Consensus        21 ~i~~~~l~~~~~----~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~----~   87 (121)
                      .++++|+++.|+    ...++++|||++++||.+||||+||||||-..+.++++++.     -+|+|.|+|.++-    +
T Consensus         6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~   85 (534)
T COG4172           6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER   85 (534)
T ss_pred             ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence            489999999985    47899999999999999999999999999999999999864     3689999999873    1


Q ss_pred             h----hcccEEEEeeCCC--CCCCCCHHHHHhhc
Q psy16345         88 R----WKRKICYVLQQDI--FFPELTLRQTLEVS  115 (121)
Q Consensus        88 ~----~~~~i~~v~Q~~~--l~~~ltv~e~l~~~  115 (121)
                      +    +..+|+++||+|.  |.|-.|+...+...
T Consensus        86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~  119 (534)
T COG4172          86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV  119 (534)
T ss_pred             HHhhhcccceEEEecccccccCcHhHHHHHHHHH
Confidence            2    3347999999985  77766877776643

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.59  E-value=7.9e-16  Score=108.73  Aligned_cols=92  Identities=28%  Similarity=0.439  Sum_probs=75.9

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICYV   96 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~v   96 (121)
                      ++++++++..    +-|-.+|.++..||++-+||||||||||||-.++|+++ .+|+|.+.|.++.    .++.++-+|+
T Consensus         3 l~qln~v~~~----tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAYL   77 (248)
T COG4138           3 LMQLNDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYL   77 (248)
T ss_pred             eeeecccccc----ccccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHHH
Confidence            4677777653    35788999999999999999999999999999999974 5799999999986    2567778899


Q ss_pred             eeCCCCCCCCCHHHHHhhccc
Q psy16345         97 LQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      .|+..-.+.|.|+.++.+.-+
T Consensus        78 sQqq~p~f~mpV~~YL~L~qP   98 (248)
T COG4138          78 SQQQTPPFAMPVWHYLTLHQP   98 (248)
T ss_pred             hhccCCcchhhhhhhhhhcCc
Confidence            987654556788888877654

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.58  E-value=9.6e-15  Score=118.44  Aligned_cols=91  Identities=31%  Similarity=0.436  Sum_probs=79.9

Q ss_pred             cEEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345         20 LELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ   98 (121)
Q Consensus        20 ~~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q   98 (121)
                      ..++++|++..-++ +..+++.+|++++|+.+-|.|+||||||||+|+|+|+.+..+|+|.+=.       ...+-|+||
T Consensus       391 ~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-------~~~~lflpQ  463 (604)
T COG4178         391 HGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-------DSALLFLPQ  463 (604)
T ss_pred             ceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-------CCceEEecC
Confidence            46999999998865 7899999999999999999999999999999999999999999987641       235899999


Q ss_pred             CCCCCCCCCHHHHHhhcccC
Q psy16345         99 QDIFFPELTLRQTLEVSIAD  118 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~~~~  118 (121)
                      .|.+... |.+|.+.+....
T Consensus       464 ~PY~p~G-tLre~l~YP~~~  482 (604)
T COG4178         464 RPYLPQG-TLREALCYPNAA  482 (604)
T ss_pred             CCCCCCc-cHHHHHhCCCCC
Confidence            9988766 999999987653

>KOG0060|consensus

Probab=99.53  E-value=7.3e-14  Score=112.25  Aligned_cols=95  Identities=24%  Similarity=0.387  Sum_probs=78.9

Q ss_pred             CccEEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEE
Q psy16345         18 RPLELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICY   95 (121)
Q Consensus        18 ~~~~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~   95 (121)
                      ++..|++++++..-..  ..+++++||+|+.|+.+-|.||||||||+|||+++|+++...|.+..-.+.-    -+.+-|
T Consensus       430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~----~~~lff  505 (659)
T KOG0060|consen  430 ADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG----PKDLFF  505 (659)
T ss_pred             ccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC----CCceEE
Confidence            3457999999998754  5678889999999999999999999999999999999999999987543221    134899


Q ss_pred             EeeCCCCCCCCCHHHHHhhccc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      |||.|.+.-. |.+|.+.+...
T Consensus       506 lPQrPYmt~G-TLRdQvIYP~~  526 (659)
T KOG0060|consen  506 LPQRPYMTLG-TLRDQVIYPLK  526 (659)
T ss_pred             ecCCCCcccc-chhheeeccCc
Confidence            9999976655 99999998753

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.53  E-value=6.9e-15  Score=105.21  Aligned_cols=65  Identities=17%  Similarity=0.248  Sum_probs=52.2

Q ss_pred             EeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc---------cEEEECCEeCCh-hhcccEEEEeeCCCCC
Q psy16345         38 KDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS---------GVIRLNKERLNK-RWKRKICYVLQQDIFF  103 (121)
Q Consensus        38 ~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~---------G~i~~~g~~~~~-~~~~~i~~v~Q~~~l~  103 (121)
                      +++++++.+| +++|+||||||||||+++|++++++..         |++.+.|.+... ..+++++||||++..+
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~   88 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR   88 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc
Confidence            6789999999 999999999999999999999976552         456666665432 3356799999998754

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.46  E-value=5.9e-14  Score=102.47  Aligned_cols=85  Identities=16%  Similarity=0.347  Sum_probs=59.8

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHH----------------cCCCCCcc--------E
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA----------------GRVKLDSG--------V   77 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~----------------gl~~~~~G--------~   77 (121)
                      |+++|.. .|+++.++.+++     |++++|+||||||||||+++|+                +++.+.+|        +
T Consensus         4 i~~~nfk-sy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~   77 (243)
T cd03272           4 VIIQGFK-SYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVE   77 (243)
T ss_pred             EEEeCcc-CcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEE
Confidence            5566654 577778888886     7899999999999999999998                44455555        6


Q ss_pred             EEECCEe----CC---hhhcccEEEEeeCCCCCC-CCCHHHHH
Q psy16345         78 IRLNKER----LN---KRWKRKICYVLQQDIFFP-ELTLRQTL  112 (121)
Q Consensus        78 i~~~g~~----~~---~~~~~~i~~v~Q~~~l~~-~ltv~e~l  112 (121)
                      +.+++.+    +.   ...++.+++++|+..+++ ..|..|..
T Consensus        78 i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~  120 (243)
T cd03272          78 IIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVM  120 (243)
T ss_pred             EEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHH
Confidence            6665532    11   134567899998877766 34655543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.46  E-value=4.1e-15  Score=107.50  Aligned_cols=78  Identities=17%  Similarity=0.279  Sum_probs=55.8

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD  100 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~  100 (121)
                      .|+++|+. .|++..+++++++     ++++|+||||||||||+++|.-.          .|.+.....++++++++|+.
T Consensus         5 ~l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~----------~G~~~~~~~~~~i~~~~~~~   68 (212)
T cd03274           5 KLVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV----------FGFRASKMRQKKLSDLIHNS   68 (212)
T ss_pred             EEEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH----------hccCHHHhhhhhHHHHhcCC
Confidence            36778877 7888889999987     89999999999999999999722          22222112224577777776


Q ss_pred             CCCCCCCHHHHHhh
Q psy16345        101 IFFPELTLRQTLEV  114 (121)
Q Consensus       101 ~l~~~ltv~e~l~~  114 (121)
                      .+++.+++++++.+
T Consensus        69 ~~~~~~~~~~~~~~   82 (212)
T cd03274          69 AGHPNLDSCSVEVH   82 (212)
T ss_pred             CCCCCCceEEEEEE
Confidence            66666666665443

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.45  E-value=1.3e-12  Score=103.42  Aligned_cols=99  Identities=28%  Similarity=0.408  Sum_probs=86.3

Q ss_pred             ccEEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC-C-----hhhcc
Q psy16345         19 PLELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL-N-----KRWKR   91 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~-~-----~~~~~   91 (121)
                      ...+++++|+..-.. ...+++|||++++||++||.|=.|-|-+.|+.+|+|+.++.+|+|.++|+++ .     ...+.
T Consensus       255 ~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~  334 (501)
T COG3845         255 EVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL  334 (501)
T ss_pred             CeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence            456999999987654 5789999999999999999999999999999999999988889999999996 2     23456


Q ss_pred             cEEEEeeCC---CCCCCCCHHHHHhhccc
Q psy16345         92 KICYVLQQD---IFFPELTLRQTLEVSIA  117 (121)
Q Consensus        92 ~i~~v~Q~~---~l~~~ltv~e~l~~~~~  117 (121)
                      .++|||.|.   .+.+.+|+.||+.+...
T Consensus       335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~  363 (501)
T COG3845         335 GLAYVPEDRHGHGLVLDLSLAENLVLGRH  363 (501)
T ss_pred             CCccCChhhccCccccCccHHHHhhhhhc
Confidence            799999986   47889999999988654

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.44  E-value=1e-13  Score=110.17  Aligned_cols=65  Identities=20%  Similarity=0.244  Sum_probs=52.4

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc-EEEECCEeCCh---hhcccEEEEeeCC
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG-VIRLNKERLNK---RWKRKICYVLQQD  100 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G-~i~~~g~~~~~---~~~~~i~~v~Q~~  100 (121)
                      .++|++||+++++||+++|+||||||||||||  +|+..|++| +|.++|.++..   .....+-+|+|+.
T Consensus        19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR~VFQ~f   87 (504)
T TIGR03238        19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLDEIFDGF   87 (504)
T ss_pred             HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHHHHHHhh
Confidence            36899999999999999999999999999999  778888888 79999999852   1111111788864

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>KOG0064|consensus

Probab=99.40  E-value=4.4e-13  Score=107.27  Aligned_cols=88  Identities=23%  Similarity=0.433  Sum_probs=70.0

Q ss_pred             EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345         21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ   99 (121)
Q Consensus        21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~   99 (121)
                      .|.++|+-.--. ...++..++|+|++|-.+-|+||||||||+|+|+|.|+++...|...+=       ...++.|+||.
T Consensus       481 gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P-------~~~~mFYIPQR  553 (728)
T KOG0064|consen  481 GIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP-------RPNNIFYIPQR  553 (728)
T ss_pred             ceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC-------CCcceEeccCC
Confidence            377888766543 4678999999999999999999999999999999999999877766542       23469999999


Q ss_pred             CCCCCCCCHHHHHhhcc
Q psy16345        100 DIFFPELTLRQTLEVSI  116 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~~  116 (121)
                      |.+- .-|.+|.+.+..
T Consensus       554 PYms-~gtlRDQIIYPd  569 (728)
T KOG0064|consen  554 PYMS-GGTLRDQIIYPD  569 (728)
T ss_pred             CccC-cCcccceeecCC
Confidence            8764 337777766554

>KOG2355|consensus

Probab=99.39  E-value=1.2e-12  Score=94.71  Aligned_cols=67  Identities=28%  Similarity=0.456  Sum_probs=59.8

Q ss_pred             ccEEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345         19 PLELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL   85 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~   85 (121)
                      ...|++.++.|.|.. .+++-|+|++++.|....++|.||||||||||+|+|-.-...|.|.+.|++.
T Consensus        11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlgrsa   78 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSA   78 (291)
T ss_pred             cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCc
Confidence            346999999999954 6999999999999999999999999999999999997666668999888764

>KOG0927|consensus

Probab=99.36  E-value=4e-13  Score=107.39  Aligned_cols=88  Identities=18%  Similarity=0.247  Sum_probs=68.3

Q ss_pred             EEEEeeeEEEcCCc-ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345         21 ELVFSGLSVTLDKR-PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ   99 (121)
Q Consensus        21 ~i~~~~l~~~~~~~-~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~   99 (121)
                      .+.+.|++|.|.+. .++++++|-|..++.+++|||||||||||||+++|.+.|..|.+.-.-.       .++++.-|+
T Consensus       389 vi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-------~~~~~y~Qh  461 (614)
T KOG0927|consen  389 VIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-------NKLPRYNQH  461 (614)
T ss_pred             eEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-------ccchhhhhh
Confidence            48899999999765 7999999999999999999999999999999999999999999875432       234444443


Q ss_pred             CC--CCCCCCHHHHHhhc
Q psy16345        100 DI--FFPELTLRQTLEVS  115 (121)
Q Consensus       100 ~~--l~~~ltv~e~l~~~  115 (121)
                      ..  +.-+.+..|++.-.
T Consensus       462 ~~e~ldl~~s~le~~~~~  479 (614)
T KOG0927|consen  462 LAEQLDLDKSSLEFMMPK  479 (614)
T ss_pred             hHhhcCcchhHHHHHHHh
Confidence            22  33344566665543

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.34  E-value=1.6e-13  Score=98.44  Aligned_cols=73  Identities=15%  Similarity=0.232  Sum_probs=53.3

Q ss_pred             CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHH
Q psy16345         33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTL  112 (121)
Q Consensus        33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l  112 (121)
                      ++.+++|++|+.  |++++|+||||||||||+|+|++...     +...|.++..     ..+++|...+|+.+|+.||+
T Consensus        13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a-----~~~~~q~~~l~~~~~~~d~l   80 (199)
T cd03283          13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA-----SSFELPPVKIFTSIRVSDDL   80 (199)
T ss_pred             CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec-----CccCcccceEEEeccchhcc
Confidence            356778887765  79999999999999999999988542     1123444321     13667766788899999999


Q ss_pred             hhccc
Q psy16345        113 EVSIA  117 (121)
Q Consensus       113 ~~~~~  117 (121)
                      .++..
T Consensus        81 ~~~~s   85 (199)
T cd03283          81 RDGIS   85 (199)
T ss_pred             ccccC
Confidence            87653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>KOG0066|consensus

Probab=99.32  E-value=1.9e-12  Score=102.37  Aligned_cols=87  Identities=25%  Similarity=0.397  Sum_probs=72.9

Q ss_pred             cEEEEeeeEEEc-CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345         20 LELVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ   98 (121)
Q Consensus        20 ~~i~~~~l~~~~-~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q   98 (121)
                      ..+-+.+|+|.| +.+++++.++|-|.-...+|||||||.||||||++|.|-+.|.+|+.+-+       .+-+|||..|
T Consensus       585 PvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-------hrL~iG~FdQ  657 (807)
T KOG0066|consen  585 PVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-------HRLRIGWFDQ  657 (807)
T ss_pred             CeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-------ceeeeechhh
Confidence            348889999999 66899999999999999999999999999999999999999999987654       3457999988


Q ss_pred             CCC--CCCCCCHHHHHh
Q psy16345         99 QDI--FFPELTLRQTLE  113 (121)
Q Consensus        99 ~~~--l~~~ltv~e~l~  113 (121)
                      +..  |...-|..|.+.
T Consensus       658 h~~E~L~~Eetp~EyLq  674 (807)
T KOG0066|consen  658 HANEALNGEETPVEYLQ  674 (807)
T ss_pred             hhHHhhccccCHHHHHH
Confidence            753  444456666654

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.32  E-value=3.3e-13  Score=99.40  Aligned_cols=88  Identities=17%  Similarity=0.364  Sum_probs=59.2

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC-ccEEEECCE-eCCh------hhcccE
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD-SGVIRLNKE-RLNK------RWKRKI   93 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~-~G~i~~~g~-~~~~------~~~~~i   93 (121)
                      +.++|. +.|.+..++.+    +. ..+++|+||||||||||+++|++++.+. .|++++.+. ++..      ....++
T Consensus         6 ~~~~~f-~~~~~~~~~~~----~~-~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v   79 (251)
T cd03273           6 IILDGF-KSYATRTVISG----FD-PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASV   79 (251)
T ss_pred             EEEeCc-cccCcCEeecc----CC-CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEE
Confidence            555665 45544333322    22 5699999999999999999999998876 457777665 3211      124479


Q ss_pred             EEEeeCC---------CCCCCCCHHHHHhhc
Q psy16345         94 CYVLQQD---------IFFPELTLRQTLEVS  115 (121)
Q Consensus        94 ~~v~Q~~---------~l~~~ltv~e~l~~~  115 (121)
                      .+++|++         .+.+.+||.+++..+
T Consensus        80 ~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~  110 (251)
T cd03273          80 TIVFDNSDKSQSPIGFENYPEITVTRQIVLG  110 (251)
T ss_pred             EEEEEcCCcccCcccccCCceEEEEEEEEcC
Confidence            9999985         344567777766543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.32  E-value=7.4e-12  Score=100.00  Aligned_cols=93  Identities=27%  Similarity=0.370  Sum_probs=81.4

Q ss_pred             ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-----hhhcccE
Q psy16345         19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-----KRWKRKI   93 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-----~~~~~~i   93 (121)
                      ...+++++++..-    .++|+||++++||++||.|-=|||+|-|+++|.|..++.+|+|.++|+++.     +..+..+
T Consensus       261 ~~~l~v~~l~~~~----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi  336 (500)
T COG1129         261 EPVLEVRNLSGGG----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI  336 (500)
T ss_pred             CcEEEEecCCCCC----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence            3458888887532    689999999999999999999999999999999999999999999999885     2456789


Q ss_pred             EEEeeCC---CCCCCCCHHHHHhhc
Q psy16345         94 CYVLQQD---IFFPELTLRQTLEVS  115 (121)
Q Consensus        94 ~~v~Q~~---~l~~~ltv~e~l~~~  115 (121)
                      +||+.|.   .++..+++.+|+.+.
T Consensus       337 ~~v~EDRk~~Gl~l~~sI~~Ni~l~  361 (500)
T COG1129         337 AYVPEDRKSEGLVLDMSIAENITLA  361 (500)
T ss_pred             EeCCcccccCcCcCCCcHHHheehH
Confidence            9999875   588899999999876

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=99.27  E-value=2.2e-11  Score=86.11  Aligned_cols=80  Identities=21%  Similarity=0.210  Sum_probs=59.6

Q ss_pred             EeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-hhcccEEEEeeCCC--CCCCCCHHHHHhh
Q psy16345         38 KDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-RWKRKICYVLQQDI--FFPELTLRQTLEV  114 (121)
Q Consensus        38 ~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-~~~~~i~~v~Q~~~--l~~~ltv~e~l~~  114 (121)
                      +=+.+.+++|+.++|+||||||||||+++|+++++++.|.+.+.+..-.. ..+..++++.|...  ..+..+..+.+..
T Consensus        16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   95 (186)
T cd01130          16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRS   95 (186)
T ss_pred             HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHH
Confidence            33456788999999999999999999999999999999999987643211 12344667666543  3556788888876


Q ss_pred             ccc
Q psy16345        115 SIA  117 (121)
Q Consensus       115 ~~~  117 (121)
                      .+.
T Consensus        96 ~lR   98 (186)
T cd01130          96 ALR   98 (186)
T ss_pred             Hhc
Confidence            553

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.27  E-value=1.8e-12  Score=93.17  Aligned_cols=74  Identities=15%  Similarity=0.214  Sum_probs=53.4

Q ss_pred             EEEEeCCeEEEEECCCCchHHHHHHHHH----cCCCCCccEEEECCEeCC-hhhcccEEEEeeCC-----CCCCCCCHHH
Q psy16345         41 SGVVKPGELLAVMGPSGCGKTTLLNCLA----GRVKLDSGVIRLNKERLN-KRWKRKICYVLQQD-----IFFPELTLRQ  110 (121)
Q Consensus        41 sl~i~~G~~~~liG~nGsGKSTLl~~l~----gl~~~~~G~i~~~g~~~~-~~~~~~i~~v~Q~~-----~l~~~ltv~e  110 (121)
                      ++++.+| +++|+||||||||||+++|.    |...+..|.+..+...+. ...+..+++++|++     .+...+++++
T Consensus        17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~   95 (204)
T cd03240          17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILE   95 (204)
T ss_pred             EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhh
Confidence            3556677 99999999999999999995    888887776652211122 23455799999987     3444568899


Q ss_pred             HHhhc
Q psy16345        111 TLEVS  115 (121)
Q Consensus       111 ~l~~~  115 (121)
                      |+.+.
T Consensus        96 ~~~~~  100 (204)
T cd03240          96 NVIFC  100 (204)
T ss_pred             ceeee
Confidence            88764

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=99.27  E-value=2.2e-11  Score=96.48  Aligned_cols=79  Identities=23%  Similarity=0.327  Sum_probs=65.6

Q ss_pred             EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECC---EeCCh--------h
Q psy16345         21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNK---ERLNK--------R   88 (121)
Q Consensus        21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g---~~~~~--------~   88 (121)
                      .++.++++..|. +..+++.++ .+.+|++++|+|+||+|||||+++|+++.+|+.|.+.+.|   +++..        .
T Consensus       139 ~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~  217 (450)
T PRK06002        139 AMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADN  217 (450)
T ss_pred             CeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHh
Confidence            478899999995 467888885 9999999999999999999999999999999999888854   55431        2


Q ss_pred             hcccEEEEeeCC
Q psy16345         89 WKRKICYVLQQD  100 (121)
Q Consensus        89 ~~~~i~~v~Q~~  100 (121)
                      +++.++||+|..
T Consensus       218 r~rtI~vV~qsd  229 (450)
T PRK06002        218 LKKAVAVVATSD  229 (450)
T ss_pred             hCCeEEEEEcCC
Confidence            346799999965

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.26  E-value=3.7e-12  Score=92.72  Aligned_cols=35  Identities=29%  Similarity=0.404  Sum_probs=31.7

Q ss_pred             EcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHH
Q psy16345         30 TLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLL   64 (121)
Q Consensus        30 ~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl   64 (121)
                      ...+..+|+++||+|++||++||+|+||||||||+
T Consensus         4 ~~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~   38 (226)
T cd03270           4 RGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLA   38 (226)
T ss_pred             ccchhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence            34456799999999999999999999999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0927|consensus

Probab=99.25  E-value=1.2e-11  Score=99.06  Aligned_cols=56  Identities=29%  Similarity=0.506  Sum_probs=52.2

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG   76 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G   76 (121)
                      .+.+.++++.|.+..+++|++|++.+|+.+||+|+|||||||+|++|.|-..|..-
T Consensus        75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~  130 (614)
T KOG0927|consen   75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPE  130 (614)
T ss_pred             cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCc
Confidence            48899999999999999999999999999999999999999999999998877543

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=99.24  E-value=8.7e-12  Score=98.52  Aligned_cols=82  Identities=13%  Similarity=0.155  Sum_probs=64.7

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc---EEEECCEeCCh----------hhcccEEEEeeCC
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG---VIRLNKERLNK----------RWKRKICYVLQQD  100 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G---~i~~~g~~~~~----------~~~~~i~~v~Q~~  100 (121)
                      ..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+++.+   .|-.+++++..          ..+..+++++|+.
T Consensus       143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~  221 (434)
T PRK07196        143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE  221 (434)
T ss_pred             eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence            4689999 99999999999999999999999999999888753   33334443321          1244689999998


Q ss_pred             CCCCCCCHHHHHhhcc
Q psy16345        101 IFFPELTLRQTLEVSI  116 (121)
Q Consensus       101 ~l~~~ltv~e~l~~~~  116 (121)
                      ..+..+++.+++.+.+
T Consensus       222 s~~~rl~a~e~a~~iA  237 (434)
T PRK07196        222 SPLMRIKATELCHAIA  237 (434)
T ss_pred             ChhhhHHHHHHHHHHH
Confidence            8888889988876543

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.21  E-value=1e-11  Score=92.90  Aligned_cols=63  Identities=22%  Similarity=0.215  Sum_probs=52.4

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-----hhhcccEEEEeeCCCCCCCCCHHHH
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-----KRWKRKICYVLQQDIFFPELTLRQT  111 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-----~~~~~~i~~v~Q~~~l~~~ltv~e~  111 (121)
                      ..++|+||||||||||+++|+|++.|.+|++.++|+++.     .++...+++++|.. +...++|.+|
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~  179 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDG  179 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-cccccccccc
Confidence            578999999999999999999999999999999999884     24555678888864 4556676665

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.21  E-value=1.4e-11  Score=88.77  Aligned_cols=77  Identities=14%  Similarity=0.210  Sum_probs=51.7

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEe-CCeEEEEECCCCchHHHHHHHHHc-CCCCCccEEEECC--EeCC-hhhcccEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVK-PGELLAVMGPSGCGKTTLLNCLAG-RVKLDSGVIRLNK--ERLN-KRWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~-~G~~~~liG~nGsGKSTLl~~l~g-l~~~~~G~i~~~g--~~~~-~~~~~~i~~   95 (121)
                      .|+++|+. .|.+.   ++++|... +|++++|+|+||||||||+++|++ +..+..+......  ..+. ......+++
T Consensus         5 ~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~   80 (213)
T cd03279           5 KLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSF   80 (213)
T ss_pred             EEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEE
Confidence            58888888 66544   56667644 589999999999999999999996 4334334333320  0111 134456889


Q ss_pred             EeeCCC
Q psy16345         96 VLQQDI  101 (121)
Q Consensus        96 v~Q~~~  101 (121)
                      ++|+..
T Consensus        81 ~f~~~~   86 (213)
T cd03279          81 TFQLGG   86 (213)
T ss_pred             EEEECC
Confidence            998764

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>KOG0062|consensus

Probab=99.20  E-value=1.4e-11  Score=98.23  Aligned_cols=50  Identities=20%  Similarity=0.414  Sum_probs=47.6

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      ..|.+.+++..||++.+|.+-++++..|..+||+|+||+|||||||+|+.
T Consensus        79 ~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen   79 KDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             cceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence            35888999999999999999999999999999999999999999999987

>KOG0065|consensus

Probab=99.19  E-value=1.8e-11  Score=105.71  Aligned_cols=84  Identities=48%  Similarity=0.786  Sum_probs=73.8

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC---CccEEEECCEeCChh-hcccEEEEeeCCCCCCCCCHH
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL---DSGVIRLNKERLNKR-WKRKICYVLQQDIFFPELTLR  109 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~---~~G~i~~~g~~~~~~-~~~~i~~v~Q~~~l~~~ltv~  109 (121)
                      ..+++|+++-+++|+.+-++||.||||||||++|+|-++-   ..|+|.++|.+.... .++.++|..|++..+|+|||+
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr  207 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR  207 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence            3699999999999999999999999999999999997642   357999999998742 256799999999999999999


Q ss_pred             HHHhhccc
Q psy16345        110 QTLEVSIA  117 (121)
Q Consensus       110 e~l~~~~~  117 (121)
                      |.+.|.++
T Consensus       208 eTldFa~r  215 (1391)
T KOG0065|consen  208 ETLDFAAR  215 (1391)
T ss_pred             ehhhHHHh
Confidence            99998764

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.17  E-value=3.4e-11  Score=87.67  Aligned_cols=92  Identities=20%  Similarity=0.312  Sum_probs=69.9

Q ss_pred             EEEeeeEEEcC----CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC----CccEEEECCEeCC----hh-
Q psy16345         22 LVFSGLSVTLD----KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL----DSGVIRLNKERLN----KR-   88 (121)
Q Consensus        22 i~~~~l~~~~~----~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~----~~G~i~~~g~~~~----~~-   88 (121)
                      +.++|++..+.    .-.+++.+|+++.+||+-||+|+||||||-..|+|+|..+.    +..+.+|++.++-    ++ 
T Consensus         4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R   83 (330)
T COG4170           4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER   83 (330)
T ss_pred             ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence            67788888773    34689999999999999999999999999999999998653    4556667776652    22 


Q ss_pred             ---hcccEEEEeeCCC--CCCCCCHHHHHh
Q psy16345         89 ---WKRKICYVLQQDI--FFPELTLRQTLE  113 (121)
Q Consensus        89 ---~~~~i~~v~Q~~~--l~~~ltv~e~l~  113 (121)
                         ..+.++++||+|.  +.|.-++...+.
T Consensus        84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlI  113 (330)
T COG4170          84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLI  113 (330)
T ss_pred             hhhhccchhhhhcCchhhcChHHHHHHHHH
Confidence               2345889999985  556555554443

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.16  E-value=1.1e-10  Score=92.48  Aligned_cols=86  Identities=30%  Similarity=0.390  Sum_probs=65.1

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ   99 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~   99 (121)
                      ..+++.++++.|++ ..|.--.-+|..||+++++||||-||||+.++|+|.++|++|.    ..      .-+++|=||-
T Consensus       341 ~lv~y~~~~k~~g~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~------~~~vSyKPQy  409 (591)
T COG1245         341 TLVEYPDLKKTYGD-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EE------DLKVSYKPQY  409 (591)
T ss_pred             eeeecchheeecCc-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cc------cceEeeccee
Confidence            34677778888874 3455556678889999999999999999999999999999997    11      1357888885


Q ss_pred             CCCCCCCCHHHHHhhcc
Q psy16345        100 DIFFPELTLRQTLEVSI  116 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~~  116 (121)
                      -.-....||.+.+....
T Consensus       410 I~~~~~gtV~~~l~~~~  426 (591)
T COG1245         410 ISPDYDGTVEDLLRSAI  426 (591)
T ss_pred             ecCCCCCcHHHHHHHhh
Confidence            44334568888776544

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.12  E-value=3.3e-11  Score=84.87  Aligned_cols=67  Identities=22%  Similarity=0.224  Sum_probs=50.2

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hh-cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RW-KRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~-~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +|++++|+|+||||||||+++|++++.+    +.++|.++..  .. +...++.+|+...++..++..++.+..
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~   71 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSL   71 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHH
Confidence            6899999999999999999999999876    5788877642  11 223566677655556667777776644

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.09  E-value=8.1e-11  Score=92.46  Aligned_cols=48  Identities=42%  Similarity=0.731  Sum_probs=42.7

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC--------CCCCccEEEEC
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR--------VKLDSGVIRLN   81 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl--------~~~~~G~i~~~   81 (121)
                      +.+++|+||++++|++++|+|+|||||||+||+|+|.        ++|++|.+.+-
T Consensus       396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp  451 (593)
T COG2401         396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP  451 (593)
T ss_pred             eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence            4689999999999999999999999999999999986        35788887653

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.02  E-value=5e-10  Score=80.00  Aligned_cols=41  Identities=22%  Similarity=0.292  Sum_probs=34.6

Q ss_pred             ceEEeeEEEEeCCe-EEEEECCCCchHHHHHHHHH--------cCCCCCc
Q psy16345         35 PILKDVSGVVKPGE-LLAVMGPSGCGKTTLLNCLA--------GRVKLDS   75 (121)
Q Consensus        35 ~~l~~vsl~i~~G~-~~~liG~nGsGKSTLl~~l~--------gl~~~~~   75 (121)
                      ..+.++||++.+|+ +++|+||||||||||||+|+        |..-|..
T Consensus        15 ~~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~   64 (200)
T cd03280          15 EKVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAA   64 (200)
T ss_pred             CceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccc
Confidence            34568999999995 89999999999999999999        7655544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK08149 ATP synthase SpaL; Validated

Probab=99.00  E-value=1.2e-09  Score=86.31  Aligned_cols=67  Identities=21%  Similarity=0.378  Sum_probs=56.6

Q ss_pred             CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc---cEEEECCEeCCh--------hhcccEEEEeeCC
Q psy16345         33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS---GVIRLNKERLNK--------RWKRKICYVLQQD  100 (121)
Q Consensus        33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~---G~i~~~g~~~~~--------~~~~~i~~v~Q~~  100 (121)
                      +..+++++ +.+.+|++++|+|+||+|||||+++|+++..++.   |.|...++++..        ...+++++|+...
T Consensus       138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s  215 (428)
T PRK08149        138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS  215 (428)
T ss_pred             CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence            45789999 9999999999999999999999999999988876   888888888742        1235788888754

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.99  E-value=6.1e-10  Score=81.10  Aligned_cols=70  Identities=14%  Similarity=0.225  Sum_probs=48.4

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHHcCCCCCccE----EEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV----IRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEV  114 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~----i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~  114 (121)
                      -.+..++||.|+||||||||+++|++++++..|.    +.+++........+..+++.+.. ....+++.+.+.+
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~  103 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAAL  103 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHH
Confidence            3567899999999999999999999999998898    55555433333334457766532 2334455554443

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.99  E-value=1.1e-09  Score=86.82  Aligned_cols=66  Identities=29%  Similarity=0.351  Sum_probs=55.1

Q ss_pred             CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC---C---------hhhcccEEEEeeC
Q psy16345         33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL---N---------KRWKRKICYVLQQ   99 (121)
Q Consensus        33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~---~---------~~~~~~i~~v~Q~   99 (121)
                      +..+++++ |.+.+|++++|+|+||+|||||+++|+++.+++.|.|.+.|+.-   .         ..+++.+.++.+.
T Consensus       145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~  222 (438)
T PRK07721        145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS  222 (438)
T ss_pred             chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence            34689999 99999999999999999999999999999999999998854432   2         1256678888764

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.97  E-value=6e-10  Score=83.05  Aligned_cols=33  Identities=36%  Similarity=0.472  Sum_probs=30.9

Q ss_pred             ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHH
Q psy16345         35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL   67 (121)
Q Consensus        35 ~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l   67 (121)
                      .-|++++++|+.|.+++|.|.||||||||++.+
T Consensus         9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~   41 (261)
T cd03271           9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT   41 (261)
T ss_pred             hcCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence            459999999999999999999999999999866

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.97  E-value=5.9e-10  Score=80.84  Aligned_cols=74  Identities=20%  Similarity=0.156  Sum_probs=52.1

Q ss_pred             CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHH
Q psy16345         33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTL  112 (121)
Q Consensus        33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l  112 (121)
                      .+.+.+|++++..+ ++++|+||||+|||||||+++++.-.  +.   .|..+. .....++++.|   +++.+++.+++
T Consensus        17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~vp-~~~~~i~~~~~---i~~~~~~~~~l   86 (216)
T cd03284          17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFVP-ASKAEIGVVDR---IFTRIGASDDL   86 (216)
T ss_pred             CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCeec-cccceecceee---EeccCCchhhh
Confidence            45689999999887 99999999999999999999874321  11   111221 12345677755   46778888888


Q ss_pred             hhcc
Q psy16345        113 EVSI  116 (121)
Q Consensus       113 ~~~~  116 (121)
                      ..+.
T Consensus        87 s~g~   90 (216)
T cd03284          87 AGGR   90 (216)
T ss_pred             ccCc
Confidence            7654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.96  E-value=6.5e-10  Score=89.51  Aligned_cols=62  Identities=23%  Similarity=0.253  Sum_probs=57.1

Q ss_pred             EeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345         24 FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL   85 (121)
Q Consensus        24 ~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~   85 (121)
                      +.|++..|+.+.+++.+++.+..|+.++|+|+||+|||||++.|.|+++|.+|++.+....+
T Consensus       187 ~~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i  248 (506)
T PRK09862        187 QHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI  248 (506)
T ss_pred             ccCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence            45889999988999999999999999999999999999999999999999999988876554

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.95  E-value=1e-09  Score=77.46  Aligned_cols=50  Identities=30%  Similarity=0.493  Sum_probs=39.3

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEEeeC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYVLQQ   99 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v~Q~   99 (121)
                      |++++|+||||||||||+|+|++...+   .+.+.+..+.+    .....+++++|+
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQE   55 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHH
Confidence            789999999999999999999998765   57777766643    223457777776

>PRK01889 GTPase RsgA; Reviewed

Probab=98.94  E-value=1.3e-09  Score=84.43  Aligned_cols=77  Identities=22%  Similarity=0.366  Sum_probs=57.2

Q ss_pred             EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-hhhcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345         37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-KRWKRKICYVLQQDIFFPELTLRQTLEV  114 (121)
Q Consensus        37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-~~~~~~i~~v~Q~~~l~~~ltv~e~l~~  114 (121)
                      ++.+.-.+++|++++|+|+||+|||||++.|+|...+..|+|.+++.... ....+.+.+++|...++. .+...++.+
T Consensus       185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~D-tpG~~~~~l  262 (356)
T PRK01889        185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLID-TPGMRELQL  262 (356)
T ss_pred             HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecC-CCchhhhcc
Confidence            44445556789999999999999999999999999999999998764432 233457888888765553 244444443

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.94  E-value=1.1e-09  Score=78.89  Aligned_cols=38  Identities=26%  Similarity=0.289  Sum_probs=35.1

Q ss_pred             CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        32 ~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++.+.+|++|++.+|++++|+||||+||||++|++++
T Consensus        14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~   51 (204)
T cd03282          14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIAL   51 (204)
T ss_pred             CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            35679999999999999999999999999999999984

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00235 udk uridine kinase

Probab=98.93  E-value=2.8e-10  Score=81.59  Aligned_cols=68  Identities=18%  Similarity=0.188  Sum_probs=42.4

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCCC-CccEEEECCEeCCh---hhcccEEEEeeCCCCCCCCCHHHHH
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVKL-DSGVIRLNKERLNK---RWKRKICYVLQQDIFFPELTLRQTL  112 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~-~~G~i~~~g~~~~~---~~~~~i~~v~Q~~~l~~~ltv~e~l  112 (121)
                      ++|++++|+|+||||||||++.|++++++ ..+.+..++.-...   ......++.+|.+..+....+.+.+
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   75 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHL   75 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHH
Confidence            68999999999999999999999998765 22333333321111   1233456667765544332334443

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.91  E-value=1.4e-09  Score=83.23  Aligned_cols=72  Identities=19%  Similarity=0.174  Sum_probs=55.8

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----------hhcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----------RWKRKICYVLQQDIFFPELTLRQTLEV  114 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----------~~~~~i~~v~Q~~~l~~~ltv~e~l~~  114 (121)
                      .+|++++|+||||+||||++..|++.+.+..++|.+-+.+..+          ..+..+.+++|.....|..++++++..
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~  191 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA  191 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence            5799999999999999999999999988888899887766421          224568899987655565567777665


Q ss_pred             cc
Q psy16345        115 SI  116 (121)
Q Consensus       115 ~~  116 (121)
                      ..
T Consensus       192 ~~  193 (318)
T PRK10416        192 AK  193 (318)
T ss_pred             HH
Confidence            43

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.89  E-value=1.7e-09  Score=81.81  Aligned_cols=69  Identities=12%  Similarity=0.161  Sum_probs=47.3

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCC--CCccEEEECCEe---CChhhcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVK--LDSGVIRLNKER---LNKRWKRKICYVLQQDIFFPELTLRQTLEV  114 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~---~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~  114 (121)
                      +.-.++||.|+||||||||+++|.+++.  +.+|.+.+-+.+   .....++..+++ |...+...+++.+.+.+
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~  133 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKF  133 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHH
Confidence            3447999999999999999999999887  677887654333   333333334543 65556666677666554

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.88  E-value=2.6e-09  Score=84.54  Aligned_cols=62  Identities=27%  Similarity=0.391  Sum_probs=53.9

Q ss_pred             EEEeeeEEEc-CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe
Q psy16345         22 LVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER   84 (121)
Q Consensus        22 i~~~~l~~~~-~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~   84 (121)
                      ++.+.++..+ .+..+++++ |.+.+|++++|+|+||+|||||+++|+++.+++.|.+.+.|..
T Consensus       130 ~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR  192 (433)
T PRK07594        130 MVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192 (433)
T ss_pred             eeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence            6667777777 356899999 9999999999999999999999999999999999887776654

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.86  E-value=1.7e-09  Score=64.07  Aligned_cols=39  Identities=26%  Similarity=0.504  Sum_probs=30.6

Q ss_pred             EEeeEEEEeC-CeEEEEECCCCchHHHHHHHHHcCCCCCc
Q psy16345         37 LKDVSGVVKP-GELLAVMGPSGCGKTTLLNCLAGRVKLDS   75 (121)
Q Consensus        37 l~~vsl~i~~-G~~~~liG~nGsGKSTLl~~l~gl~~~~~   75 (121)
                      +++.++++.+ |.++.|.|+||||||||+.+|.=++.+..
T Consensus        12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~   51 (62)
T PF13555_consen   12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT   51 (62)
T ss_pred             cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence            4455667764 56999999999999999999987665543

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.85  E-value=5.3e-09  Score=80.21  Aligned_cols=55  Identities=31%  Similarity=0.369  Sum_probs=46.9

Q ss_pred             EEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCE
Q psy16345         28 SVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE   83 (121)
Q Consensus        28 ~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~   83 (121)
                      +..+. +..+++.+ +.+.+|++++|+|+||+|||||+++|+++..++.|.+..-|.
T Consensus        50 ~~~l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGe  105 (326)
T cd01136          50 DEVLPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGE  105 (326)
T ss_pred             eeEcCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEec
Confidence            33443 35789999 999999999999999999999999999999998887776553

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>TIGR00767 rho transcription termination factor Rho

Probab=98.85  E-value=6.2e-09  Score=81.71  Aligned_cols=52  Identities=25%  Similarity=0.393  Sum_probs=47.3

Q ss_pred             EEEEeeeEEEcCC-cceEE-----------eeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         21 ELVFSGLSVTLDK-RPILK-----------DVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        21 ~i~~~~l~~~~~~-~~~l~-----------~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      .++++||++.|.+ +.+|+           |+.+.|.+|+.++|+||+|+|||||++.|+..+.
T Consensus       130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~  193 (415)
T TIGR00767       130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT  193 (415)
T ss_pred             CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence            5999999999965 56786           9999999999999999999999999999998754

Members of this family differ in the specificity of RNA binding.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.85  E-value=3.4e-09  Score=75.76  Aligned_cols=33  Identities=27%  Similarity=0.358  Sum_probs=28.2

Q ss_pred             EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      +-..++++.+|++++|+||||||||||||+|++
T Consensus        19 ~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          19 FVPNDINLGSGRLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             eEeeeEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence            344566667899999999999999999999993

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.85  E-value=6.5e-09  Score=82.23  Aligned_cols=73  Identities=25%  Similarity=0.301  Sum_probs=56.6

Q ss_pred             CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe---CCh---h----hcccEEEEeeCCCC
Q psy16345         33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER---LNK---R----WKRKICYVLQQDIF  102 (121)
Q Consensus        33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~---~~~---~----~~~~i~~v~Q~~~l  102 (121)
                      +..+++++ |.+.+|++++|+|+||+|||||+++|+++..++.|.+.+.|..   +..   .    -....+++++....
T Consensus       132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~  210 (422)
T TIGR02546       132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSD  210 (422)
T ss_pred             Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEecccc
Confidence            45689999 9999999999999999999999999999999999888775443   321   1    12235677777665


Q ss_pred             CCCC
Q psy16345        103 FPEL  106 (121)
Q Consensus       103 ~~~l  106 (121)
                      +|.+
T Consensus       211 ~p~~  214 (422)
T TIGR02546       211 RPSL  214 (422)
T ss_pred             CCHH
Confidence            6554

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.84  E-value=1.4e-08  Score=70.84  Aligned_cols=62  Identities=26%  Similarity=0.304  Sum_probs=43.4

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCCCCCccEEEE-----------CCEeCC---h-h-----hcccEEEEeeCCCCCCCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL-----------NKERLN---K-R-----WKRKICYVLQQDIFFPEL  106 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~-----------~g~~~~---~-~-----~~~~i~~v~Q~~~l~~~l  106 (121)
                      |++++|+||||||||||++.|+..+.+. |.+.+           +|.++.   . .     ..+.+..++|...++...
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   79 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGI   79 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccC
Confidence            5789999999999999999999987543 54544           333331   1 1     134588889987766665


Q ss_pred             CHH
Q psy16345        107 TLR  109 (121)
Q Consensus       107 tv~  109 (121)
                      ++.
T Consensus        80 ~~~   82 (179)
T TIGR02322        80 PAE   82 (179)
T ss_pred             hHH
Confidence            654

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.83  E-value=3.9e-09  Score=76.98  Aligned_cols=48  Identities=19%  Similarity=0.209  Sum_probs=40.8

Q ss_pred             CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc-CCCCCccEEEE
Q psy16345         33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG-RVKLDSGVIRL   80 (121)
Q Consensus        33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g-l~~~~~G~i~~   80 (121)
                      .+.+.++++|++.+|++++|+||||+||||++|++++ .+.+..|....
T Consensus        17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~   65 (222)
T cd03287          17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP   65 (222)
T ss_pred             CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            3578999999999999999999999999999999999 44555665443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.82  E-value=4.9e-09  Score=77.14  Aligned_cols=54  Identities=19%  Similarity=0.365  Sum_probs=38.8

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEEC
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN   81 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~   81 (121)
                      .++++|+ +.|.+...+     .+.+ .+++|+||||||||||+.+|++++.+..|+++..
T Consensus         3 ~i~l~nf-~~~~~~~~~-----~~~~-~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~   56 (247)
T cd03275           3 RLELENF-KSYKGRHVI-----GPFD-RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSK   56 (247)
T ss_pred             EEEEECc-cccCCCeee-----cCCC-CeEEEECCCCCCHHHHHHHHHHHhCCCccccccc
Confidence            3667776 456443323     2233 4999999999999999999999887766766543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=98.81  E-value=7.4e-09  Score=82.27  Aligned_cols=65  Identities=22%  Similarity=0.299  Sum_probs=52.9

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc---cEEEECCEeCCh-------hhcccEEEEeeCCC
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS---GVIRLNKERLNK-------RWKRKICYVLQQDI  101 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~---G~i~~~g~~~~~-------~~~~~i~~v~Q~~~  101 (121)
                      +++.+ |.+.+|++++|+|+||+|||||+++|+++.+++.   |.|.+.++++..       .-.+..++|+|...
T Consensus       165 aID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a  239 (455)
T PRK07960        165 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA  239 (455)
T ss_pred             eeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence            44444 9999999999999999999999999999999875   889999988752       12345788888653

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.81  E-value=3.4e-09  Score=75.58  Aligned_cols=56  Identities=18%  Similarity=0.225  Sum_probs=44.0

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCCCC-ccEEEECCEeCChhhcccEEEEeeCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLD-SGVIRLNKERLNKRWKRKICYVLQQD  100 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~~-~G~i~~~g~~~~~~~~~~i~~v~Q~~  100 (121)
                      .+|.+++|+|+||||||||.+.|.+.+.+. .|.+.+++.++.+.+...++|.+|+.
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~   78 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADR   78 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccH
Confidence            678999999999999999999999976543 46899998877544444567777764

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.80  E-value=4.3e-09  Score=74.90  Aligned_cols=28  Identities=43%  Similarity=0.720  Sum_probs=26.2

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      ++|++++|+||||||||||+++|++.++
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5899999999999999999999999874

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.78  E-value=1e-08  Score=81.47  Aligned_cols=52  Identities=29%  Similarity=0.438  Sum_probs=47.1

Q ss_pred             CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345         33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL   85 (121)
Q Consensus        33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~   85 (121)
                      +..+++++ +.+.+|++++|+|+||+|||||+++|+++..++.|.+.+.|+.-
T Consensus       150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~  201 (441)
T PRK09099        150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERG  201 (441)
T ss_pred             Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccCh
Confidence            45689999 99999999999999999999999999999999999888877543

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=98.77  E-value=6.9e-09  Score=92.89  Aligned_cols=57  Identities=25%  Similarity=0.288  Sum_probs=46.1

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNK   82 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g   82 (121)
                      +...++++.+.....|++++|+|++|++++|+|+||||||||++.+  ++.  .|++.|..
T Consensus       936 l~~~~i~i~~~~~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~~--~G~~~~~e  992 (1809)
T PRK00635        936 PVPADITIKNAYQHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LYA--AGNIAYAE  992 (1809)
T ss_pred             cccceEEEeccccccccceeEEecCCcEEEEECCCCCChhHHHHHH--HHh--hccEeeec
Confidence            4456777777655679999999999999999999999999988766  332  78887653

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.77  E-value=4.8e-09  Score=84.09  Aligned_cols=63  Identities=27%  Similarity=0.486  Sum_probs=46.1

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEV  114 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~  114 (121)
                      ++++.++.+.+|.+++|+||||+||||++..|++.+....|.             .+++++.+|+   ...++.|++.+
T Consensus       245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-------------~kV~LI~~Dt---~RigA~EQLr~  307 (484)
T PRK06995        245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-------------SKVALLTTDS---YRIGGHEQLRI  307 (484)
T ss_pred             hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-------------CeEEEEeCCc---cchhHHHHHHH
Confidence            456677778899999999999999999999999876554442             1456666664   23456666654

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=98.76  E-value=1.6e-08  Score=79.81  Aligned_cols=52  Identities=35%  Similarity=0.378  Sum_probs=45.8

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN   86 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~   86 (121)
                      ..++ |.+|.+.+|++++|+|+||+|||||+++|+++.+++.|.|.+.|...+
T Consensus       128 i~ai-D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~  179 (418)
T TIGR03498       128 VRVI-DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGR  179 (418)
T ss_pred             cEEE-eeeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeech
Confidence            3455 479999999999999999999999999999999999999888877543

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.75  E-value=8.6e-09  Score=84.26  Aligned_cols=63  Identities=24%  Similarity=0.219  Sum_probs=50.5

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEV  114 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~  114 (121)
                      -++||.|+||||||||++.|++++ +..|.|.++|....   .+.+.+.+|++.++...++.+++..
T Consensus        66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~~---~~~i~~nfD~P~a~D~d~L~enL~~  128 (656)
T PLN02318         66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYNDS---SRIIDGNFDDPRLTDYDTLLDNIHD  128 (656)
T ss_pred             EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceecc---hhhhCccCCChhhcchhHHHHHHHH
Confidence            589999999999999999999987 56789999987532   2235678888877776788888754

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.73  E-value=1.6e-08  Score=80.39  Aligned_cols=50  Identities=32%  Similarity=0.432  Sum_probs=44.7

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER   84 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~   84 (121)
                      ..+++.+ |.+.+|++++|+|+||+|||||+++|+++.+++.|.+...|..
T Consensus       151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r  200 (440)
T TIGR01026       151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGER  200 (440)
T ss_pred             eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeec
Confidence            5689999 9999999999999999999999999999999988877665544

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=98.72  E-value=2.8e-08  Score=78.45  Aligned_cols=52  Identities=31%  Similarity=0.386  Sum_probs=47.2

Q ss_pred             CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345         33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL   85 (121)
Q Consensus        33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~   85 (121)
                      +..+++++ |.+.+|++++|+|+||+|||||+++|++..+++.|.+.+.|+..
T Consensus       124 Gi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~  175 (413)
T TIGR03497       124 GIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERG  175 (413)
T ss_pred             cceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccch
Confidence            35689999 99999999999999999999999999999999999888777654

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.72  E-value=1.1e-08  Score=74.43  Aligned_cols=32  Identities=22%  Similarity=0.383  Sum_probs=26.2

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCCC--CccEEEE
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVKL--DSGVIRL   80 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~~--~~G~i~~   80 (121)
                      ++||.|+||||||||++.|.+++.+  ..+.+.+
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v   34 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL   34 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence            5899999999999999999998864  4455543

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.72  E-value=8e-09  Score=78.52  Aligned_cols=77  Identities=17%  Similarity=0.277  Sum_probs=52.6

Q ss_pred             eEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe-CChhhcccEEEEeeCCC-CCCCCCHHHHHhhcc
Q psy16345         40 VSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER-LNKRWKRKICYVLQQDI-FFPELTLRQTLEVSI  116 (121)
Q Consensus        40 vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~-~~~~~~~~i~~v~Q~~~-l~~~ltv~e~l~~~~  116 (121)
                      +++.++.|+.++|+|++|||||||+++|++++++..+.+.+.+.. +.-.....+.++.+... -....+..+.+...+
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~L  215 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCL  215 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHh
Confidence            446788999999999999999999999999999988888876421 11111234555444321 123457777776554

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=98.70  E-value=2.9e-08  Score=72.29  Aligned_cols=37  Identities=27%  Similarity=0.348  Sum_probs=33.7

Q ss_pred             CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345         32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        32 ~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      +.+.+.+|+++++.++++++|.||||+|||||+|+++
T Consensus        15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~   51 (222)
T cd03285          15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG   51 (222)
T ss_pred             CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence            3457899999999999999999999999999999864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.68  E-value=4.1e-08  Score=73.98  Aligned_cols=74  Identities=20%  Similarity=0.281  Sum_probs=51.8

Q ss_pred             eeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEE---CCEeCCh---hhc-ccEEEEeeCCCC---C-CCCC
Q psy16345         39 DVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL---NKERLNK---RWK-RKICYVLQQDIF---F-PELT  107 (121)
Q Consensus        39 ~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~---~g~~~~~---~~~-~~i~~v~Q~~~l---~-~~lt  107 (121)
                      .+...+. +++++++|+||+|||||++.|.|...+..|++..   .|+..+.   ..+ ...+++.+.|.+   . ..++
T Consensus       154 ~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~  232 (287)
T cd01854         154 ELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHID  232 (287)
T ss_pred             HHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCC
Confidence            3333444 5899999999999999999999999998998875   2332221   112 236789998876   3 4567


Q ss_pred             HHHHHh
Q psy16345        108 LRQTLE  113 (121)
Q Consensus       108 v~e~l~  113 (121)
                      ..+...
T Consensus       233 ~~~~~~  238 (287)
T cd01854         233 PEELAH  238 (287)
T ss_pred             HHHHHH
Confidence            666544

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.67  E-value=6.3e-08  Score=73.35  Aligned_cols=66  Identities=26%  Similarity=0.351  Sum_probs=48.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEE---CCEeCCh--hh--cccEEEEeeCCCCC----CCCCHHHH
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL---NKERLNK--RW--KRKICYVLQQDIFF----PELTLRQT  111 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~---~g~~~~~--~~--~~~i~~v~Q~~~l~----~~ltv~e~  111 (121)
                      +|.+++++|+||+|||||++.|.|...+..|+|..   .|+..++  .+  ....+|+...|.+.    ..++..+.
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~  239 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEEL  239 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHH
Confidence            58999999999999999999999999888999886   3333322  11  22457888888765    34565443

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=98.67  E-value=2.3e-08  Score=85.40  Aligned_cols=40  Identities=33%  Similarity=0.478  Sum_probs=36.1

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHH
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLN   65 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~   65 (121)
                      .+++++++.     ..|++++|+|++|++++|+|+||||||||++
T Consensus       612 ~l~l~~~~~-----~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~  651 (924)
T TIGR00630       612 FLTLKGARE-----NNLKNITVSIPLGLFTCITGVSGSGKSTLIN  651 (924)
T ss_pred             eEEEEeCcc-----CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence            478888873     3599999999999999999999999999997

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00606 rad50 rad50

Probab=98.66  E-value=7.6e-08  Score=84.95  Aligned_cols=73  Identities=19%  Similarity=0.397  Sum_probs=47.5

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHH----HcCCCCC-ccEEEECCEeCCh--hhcc
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL----AGRVKLD-SGVIRLNKERLNK--RWKR   91 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l----~gl~~~~-~G~i~~~g~~~~~--~~~~   91 (121)
                      .+.++++. +|+.  +. -..|.|  .+ .+++|+|||||||||++.+|    .|..+|. .|.+.+.+..+..  ..+.
T Consensus         5 kl~i~g~r-Sf~~~~~~-~~~I~F--~~-~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~~~~~a   79 (1311)
T TIGR00606         5 KMSILGVR-SFGIEDKD-KQIIDF--FS-PLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQETDVRA   79 (1311)
T ss_pred             eeeeecee-cCCCcccc-ceeeec--cc-ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCccHhhhh
Confidence            46777774 5542  11 122334  34 49999999999999999999    4988885 6887776654431  2334


Q ss_pred             cEEEEee
Q psy16345         92 KICYVLQ   98 (121)
Q Consensus        92 ~i~~v~Q   98 (121)
                      .|.++|+
T Consensus        80 ~V~l~F~   86 (1311)
T TIGR00606        80 QIRLQFR   86 (1311)
T ss_pred             eeEEEEE
Confidence            4555554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.66  E-value=2.7e-08  Score=79.00  Aligned_cols=48  Identities=25%  Similarity=0.374  Sum_probs=40.2

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-CccEEEECC
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-DSGVIRLNK   82 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-~~G~i~~~g   82 (121)
                      -.+++.+ |.+.+|+.++|+|+||+|||||+++|+++.+. +.|.|.+.|
T Consensus       152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liG  200 (442)
T PRK06315        152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG  200 (442)
T ss_pred             EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEEC
Confidence            3578887 99999999999999999999999999998844 446666644

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=98.65  E-value=5e-08  Score=76.97  Aligned_cols=60  Identities=28%  Similarity=0.357  Sum_probs=49.0

Q ss_pred             EeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe
Q psy16345         24 FSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER   84 (121)
Q Consensus        24 ~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~   84 (121)
                      -+.++..|. +..+++.+ |.+.+|++++|+|+||+|||||+++|+++..++.+.+...|..
T Consensus       114 R~~~~~~~~tGi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer  174 (411)
T TIGR03496       114 RAPIDEPLDVGVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGER  174 (411)
T ss_pred             ccCcceEeeeeEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecC
Confidence            344555554 35678888 9999999999999999999999999999999987776655554

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PLN02796 D-glycerate 3-kinase

Probab=98.65  E-value=5.6e-09  Score=80.49  Aligned_cols=52  Identities=23%  Similarity=0.351  Sum_probs=44.0

Q ss_pred             ceEEeeEEEE---eCCeE-----EEEECCCCchHHHHHHHHHcCCCCC---ccEEEECCEeCC
Q psy16345         35 PILKDVSGVV---KPGEL-----LAVMGPSGCGKTTLLNCLAGRVKLD---SGVIRLNKERLN   86 (121)
Q Consensus        35 ~~l~~vsl~i---~~G~~-----~~liG~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~   86 (121)
                      .+++.+++.+   ++|+.     +||+|++|||||||++.|.+++.+.   .|.|.++|..+.
T Consensus        80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt  142 (347)
T PLN02796         80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT  142 (347)
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc
Confidence            5677888877   56776     9999999999999999999998764   588899988775

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.64  E-value=6.1e-08  Score=70.17  Aligned_cols=44  Identities=18%  Similarity=0.194  Sum_probs=29.8

Q ss_pred             ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc--CCCCCccEEE
Q psy16345         35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG--RVKLDSGVIR   79 (121)
Q Consensus        35 ~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g--l~~~~~G~i~   79 (121)
                      .+-+|++++=..+.+++|+||||+|||||||.++.  ++ +..|.+.
T Consensus        17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v   62 (213)
T cd03281          17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFV   62 (213)
T ss_pred             eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCee
Confidence            34455554422238999999999999999999983  33 3445444

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK05922 type III secretion system ATPase; Validated

Probab=98.63  E-value=6e-08  Score=76.89  Aligned_cols=49  Identities=27%  Similarity=0.341  Sum_probs=42.4

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCE
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE   83 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~   83 (121)
                      -.+++.+ +.+.+|+.++|+|+||+|||||+++|++..+++.|.+..-|.
T Consensus       145 Ir~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGe  193 (434)
T PRK05922        145 IKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGE  193 (434)
T ss_pred             ceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCC
Confidence            3456665 999999999999999999999999999999998888866554

>KOG0066|consensus

Probab=98.63  E-value=6.9e-08  Score=76.93  Aligned_cols=66  Identities=20%  Similarity=0.344  Sum_probs=54.1

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc--CCCCCccEEEECCEeC
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG--RVKLDSGVIRLNKERL   85 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g--l~~~~~G~i~~~g~~~   85 (121)
                      +.|.++|++.+..++.++.+.||.|-.|..+|||||||-|||||||-|+.  +--|..=.+.+..+++
T Consensus       263 ~DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEv  330 (807)
T KOG0066|consen  263 MDIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEV  330 (807)
T ss_pred             ccceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeee
Confidence            45899999999989999999999999999999999999999999999975  2223344455555443

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.62  E-value=7.1e-08  Score=76.47  Aligned_cols=62  Identities=26%  Similarity=0.363  Sum_probs=52.3

Q ss_pred             EEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe
Q psy16345         22 LVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER   84 (121)
Q Consensus        22 i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~   84 (121)
                      ++-+.++..|.. ..+++.+ |.+.+|+.++|+|+||+|||||+++|++..+++.|.|.+.|+.
T Consensus       131 ~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer  193 (432)
T PRK06793        131 FEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER  193 (432)
T ss_pred             hheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC
Confidence            555667766653 4577774 9999999999999999999999999999999999998887655

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=98.62  E-value=4e-08  Score=78.18  Aligned_cols=52  Identities=21%  Similarity=0.313  Sum_probs=42.2

Q ss_pred             CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc---cEEEECCEeC
Q psy16345         33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS---GVIRLNKERL   85 (121)
Q Consensus        33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~---G~i~~~g~~~   85 (121)
                      +..+++.+ |.+.+|++++|+|+||+|||||+++|+++..++-   |.|-..+.++
T Consensus       155 Gi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~ev  209 (451)
T PRK05688        155 GIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREV  209 (451)
T ss_pred             ceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHhH
Confidence            35689999 9999999999999999999999999999887752   4444444443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.62  E-value=7.5e-08  Score=85.52  Aligned_cols=47  Identities=13%  Similarity=0.176  Sum_probs=41.4

Q ss_pred             EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe
Q psy16345         37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER   84 (121)
Q Consensus        37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~   84 (121)
                      +.+..|+|.+| +++|+|+|||||||+|++|++++.+..|.+.+++.+
T Consensus        18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~   64 (1486)
T PRK04863         18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT   64 (1486)
T ss_pred             ccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcc
Confidence            55668888886 999999999999999999999999989999888654

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.61  E-value=7.6e-08  Score=77.73  Aligned_cols=52  Identities=27%  Similarity=0.502  Sum_probs=43.8

Q ss_pred             eEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHH---cCCCCCccEEE
Q psy16345         27 LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA---GRVKLDSGVIR   79 (121)
Q Consensus        27 l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~---gl~~~~~G~i~   79 (121)
                      +...+|+.++++|+.+.+ ++.+++|.|||||||||+.+.|+   |+...+.|.++
T Consensus       265 ~A~~~g~~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~Y  319 (512)
T PRK13477        265 IAVRCGSTRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMY  319 (512)
T ss_pred             EEEEeCCeEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCcee
Confidence            466778889999999987 88999999999999999999999   55455566654

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.59  E-value=2e-09  Score=75.20  Aligned_cols=34  Identities=24%  Similarity=0.414  Sum_probs=28.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHH---cCCCCCccEEE
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLA---GRVKLDSGVIR   79 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~---gl~~~~~G~i~   79 (121)
                      +..+++|+|++||||||+++.|+   |+..++.|++.
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~   38 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLL   38 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHH
Confidence            34689999999999999999999   87777777654

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.58  E-value=8.5e-08  Score=66.81  Aligned_cols=26  Identities=42%  Similarity=0.708  Sum_probs=24.0

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      |++++|+||||||||||++.|++.++
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            78999999999999999999999764

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=98.58  E-value=8.2e-09  Score=71.74  Aligned_cols=60  Identities=23%  Similarity=0.178  Sum_probs=43.3

Q ss_pred             ECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         53 MGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        53 iG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +|+|||||||++++|++.+    |.+.+++..+..   ..+...++.+|+....+++++.+++.+..
T Consensus         1 ~G~sGsGKSTla~~la~~l----~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   63 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQL----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAM   63 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHh----CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHH
Confidence            6999999999999999976    567777755421   12234578888766666778888877643

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=98.57  E-value=7e-08  Score=86.65  Aligned_cols=40  Identities=38%  Similarity=0.501  Sum_probs=35.9

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHH
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLN   65 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~   65 (121)
                      .+++++++.     ..|+++||+|++|++++|+|+||||||||++
T Consensus       600 ~L~l~~~~~-----~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~  639 (1809)
T PRK00635        600 TLTLSKATK-----HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN  639 (1809)
T ss_pred             eEEEecccc-----CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence            477777763     3799999999999999999999999999999

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=98.57  E-value=6.5e-08  Score=76.71  Aligned_cols=52  Identities=23%  Similarity=0.262  Sum_probs=46.1

Q ss_pred             CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345         33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL   85 (121)
Q Consensus        33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~   85 (121)
                      +..+++++ +.+.+|++++|+|+||+|||||+++|++...++.+.|...|..-
T Consensus       144 gi~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGerg  195 (434)
T PRK08472        144 GVKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERG  195 (434)
T ss_pred             hhHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccc
Confidence            35689999 99999999999999999999999999998888888888777654

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=98.57  E-value=1.4e-07  Score=73.28  Aligned_cols=56  Identities=18%  Similarity=0.258  Sum_probs=39.9

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCC--C-CccEEEECCEeCC---hhhcccEEEEeeCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVK--L-DSGVIRLNKERLN---KRWKRKICYVLQQD  100 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~--~-~~G~i~~~g~~~~---~~~~~~i~~v~Q~~  100 (121)
                      +++..+.|+||+||||||+|++|++.+.  + ..+.|.....++.   +..+...+++.|..
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~  193 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSE  193 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeee
Confidence            4889999999999999999999999874  2 2346665555543   12333457777753

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>TIGR00368 Mg chelatase-related protein

Probab=98.56  E-value=3.9e-08  Score=79.27  Aligned_cols=55  Identities=22%  Similarity=0.309  Sum_probs=50.0

Q ss_pred             cCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345         31 LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL   85 (121)
Q Consensus        31 ~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~   85 (121)
                      +|...+.+.+++.+..|+.+.|+||||+|||||++.|.++++|.+|++.+....+
T Consensus       195 ~Gq~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i  249 (499)
T TIGR00368       195 KGQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARI  249 (499)
T ss_pred             cCcHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEecccc
Confidence            5677889999999999999999999999999999999999999999888876554

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=98.55  E-value=9.1e-08  Score=75.95  Aligned_cols=40  Identities=23%  Similarity=0.358  Sum_probs=35.6

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD   74 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~   74 (121)
                      ..+++.+ |.+.+|++++|+|+||+|||||+++|++...++
T Consensus       150 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d  189 (444)
T PRK08972        150 VRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD  189 (444)
T ss_pred             ceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence            3467777 999999999999999999999999999987664

>KOG0062|consensus

Probab=98.54  E-value=6.2e-08  Score=77.72  Aligned_cols=75  Identities=23%  Similarity=0.325  Sum_probs=65.6

Q ss_pred             ccEEEEeeeEEEcCC-c-ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEE
Q psy16345         19 PLELVFSGLSVTLDK-R-PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYV   96 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~-~-~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v   96 (121)
                      +..+++.+++|.|.. . +++..+++++..-..++++|+||+||||++|++.+-+.|..|.+.+.+       |.+++|.
T Consensus       360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-------r~ri~~f  432 (582)
T KOG0062|consen  360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-------RLRIKYF  432 (582)
T ss_pred             CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-------cceecch
Confidence            346999999999954 4 599999999999999999999999999999999999999999887753       5578888


Q ss_pred             eeCC
Q psy16345         97 LQQD  100 (121)
Q Consensus        97 ~Q~~  100 (121)
                      +|..
T Consensus       433 ~Qhh  436 (582)
T KOG0062|consen  433 AQHH  436 (582)
T ss_pred             hHhh
Confidence            8864

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=98.54  E-value=8.6e-08  Score=66.99  Aligned_cols=33  Identities=36%  Similarity=0.650  Sum_probs=26.8

Q ss_pred             EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ++++++++.+| +++|+|+||+||||++.+|.-.
T Consensus        10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~   42 (202)
T PF13476_consen   10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYA   42 (202)
T ss_dssp             EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence            47788888775 9999999999999999988643

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.54  E-value=7.6e-08  Score=72.18  Aligned_cols=51  Identities=22%  Similarity=0.339  Sum_probs=36.5

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---hhhcccEEEEeeCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---KRWKRKICYVLQQD  100 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~---~~~~~~i~~v~Q~~  100 (121)
                      ++||+|+||||||||++.|++++++..+.+...+ ++.   +..+...++.++++
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~D-d~~~~~~~~r~~~g~~~~~p   54 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLD-DYHSLDRKGRKETGITALDP   54 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECc-ccccCCHHHHHHhhcccccc
Confidence            5899999999999999999999988777655543 332   22233456666654

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=98.54  E-value=8.7e-08  Score=82.11  Aligned_cols=43  Identities=35%  Similarity=0.410  Sum_probs=37.6

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      .+++++++.     ..|+++||+|++|++++|+|.||||||||++.+.
T Consensus       614 ~L~v~~l~~-----~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l  656 (943)
T PRK00349        614 FLKLKGARE-----NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL  656 (943)
T ss_pred             eEEecCCcc-----CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence            478888862     3599999999999999999999999999998763

>cd00879 Sar1 Sar1 subfamily

Probab=98.53  E-value=8e-08  Score=67.19  Aligned_cols=49  Identities=22%  Similarity=0.352  Sum_probs=38.7

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc--------CCCCCccEEEECCEeC
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG--------RVKLDSGVIRLNKERL   85 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g--------l~~~~~G~i~~~g~~~   85 (121)
                      +|+++++..+++++ +|+|++|||||||++.+.+        ...+..+.+.+++.++
T Consensus         9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~   65 (190)
T cd00879           9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKF   65 (190)
T ss_pred             HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEE
Confidence            47778888777766 9999999999999999998        3445567777776543

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.51  E-value=1.7e-07  Score=67.12  Aligned_cols=27  Identities=30%  Similarity=0.476  Sum_probs=25.1

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++.+++|.|+||||||||.+.|++.+
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999999987

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.50  E-value=3.8e-07  Score=65.19  Aligned_cols=50  Identities=24%  Similarity=0.336  Sum_probs=34.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCCC-CccEEEECCEeCChhhcccEEEEee
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVKL-DSGVIRLNKERLNKRWKRKICYVLQ   98 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~~-~~G~i~~~g~~~~~~~~~~i~~v~Q   98 (121)
                      ++.|.||+||||||+++.|++.+.+ ..|.|...+.++........+++.|
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q   53 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQ   53 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeee
Confidence            6889999999999999999887764 4577776655543212223355655

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.49  E-value=2.2e-07  Score=66.51  Aligned_cols=66  Identities=17%  Similarity=0.166  Sum_probs=41.3

Q ss_pred             EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-----hhhcccEEEEeeCCCCCC
Q psy16345         37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-----KRWKRKICYVLQQDIFFP  104 (121)
Q Consensus        37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-----~~~~~~i~~v~Q~~~l~~  104 (121)
                      ++++++++.+| +.+|+||||||||||+.+|.-.+..... ....+..+.     ......+.+++|...+++
T Consensus        12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~   82 (198)
T cd03276          12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA   82 (198)
T ss_pred             eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC
Confidence            46778888887 8899999999999999999754322211 011122111     112345788888765544

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.49  E-value=7.5e-08  Score=68.32  Aligned_cols=23  Identities=30%  Similarity=0.583  Sum_probs=21.7

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ++||+|+||||||||+++|.+++
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999987

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK06936 type III secretion system ATPase; Provisional

Probab=98.49  E-value=2.1e-07  Score=73.89  Aligned_cols=41  Identities=22%  Similarity=0.411  Sum_probs=37.8

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS   75 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~   75 (121)
                      ..+++++ +.+.+|++++|+|+||+|||||+++|++...++-
T Consensus       150 i~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv  190 (439)
T PRK06936        150 VRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV  190 (439)
T ss_pred             cceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCCE
Confidence            4589999 9999999999999999999999999999987753

>cd04155 Arl3 Arl3 subfamily

Probab=98.47  E-value=2.9e-07  Score=63.14  Aligned_cols=38  Identities=26%  Similarity=0.455  Sum_probs=31.5

Q ss_pred             eEEEEECCCCchHHHHHHHHHcC----CCCCcc----EEEECCEeC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGR----VKLDSG----VIRLNKERL   85 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl----~~~~~G----~i~~~g~~~   85 (121)
                      -.++|+|++|||||||++.|.+.    ..|+.|    .+.+++..+
T Consensus        15 ~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~   60 (173)
T cd04155          15 PRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKL   60 (173)
T ss_pred             cEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEE
Confidence            45899999999999999999996    457778    777776654

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK06820 type III secretion system ATPase; Validated

Probab=98.46  E-value=3.4e-07  Score=72.81  Aligned_cols=44  Identities=23%  Similarity=0.363  Sum_probs=39.8

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEE
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI   78 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i   78 (121)
                      ..+++.+ +.+.+|+.++|+|+||+|||||+++|++...++.+-+
T Consensus       151 i~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~  194 (440)
T PRK06820        151 IRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVL  194 (440)
T ss_pred             Cceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEE
Confidence            5789999 9999999999999999999999999999988876544

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.45  E-value=9.6e-08  Score=80.08  Aligned_cols=46  Identities=37%  Similarity=0.597  Sum_probs=38.2

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc--EEEEC
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG--VIRLN   81 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G--~i~~~   81 (121)
                      ++++.++.+++|++++|+||||+||||++..|++.+....|  .|.+-
T Consensus       174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~li  221 (767)
T PRK14723        174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALL  221 (767)
T ss_pred             hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEe
Confidence            56778888888999999999999999999999998755555  45443

>TIGR00101 ureG urease accessory protein UreG

Probab=98.44  E-value=1.7e-07  Score=67.20  Aligned_cols=51  Identities=20%  Similarity=0.336  Sum_probs=35.0

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEEEeeCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICYVLQQD  100 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~v~Q~~  100 (121)
                      .++|+|++|||||||++.+.+.+.+..+-..+. .+..    ..+....++++|+.
T Consensus         3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~   57 (199)
T TIGR00101         3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVIT-NDIYTQEDAEFLVKNSALPPER   57 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEe-CCcCChhHHHHHHHcCCCCcCc
Confidence            689999999999999999999887764533333 3321    23344556666654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.43  E-value=1.1e-07  Score=66.33  Aligned_cols=40  Identities=28%  Similarity=0.397  Sum_probs=32.8

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEE-ECCEe
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR-LNKER   84 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~-~~g~~   84 (121)
                      .+|++++|+|.+||||||+.+.|++.+.+..+.+. +++..
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~   42 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA   42 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence            47999999999999999999999998866555554 56544

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=98.42  E-value=3.8e-07  Score=66.38  Aligned_cols=39  Identities=26%  Similarity=0.295  Sum_probs=35.6

Q ss_pred             CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        32 ~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +.+.+-+|++|+.++|++++|.||||+||||++++++..
T Consensus        15 ~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~   53 (218)
T cd03286          15 ASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA   53 (218)
T ss_pred             CCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence            356789999999999999999999999999999999765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.41  E-value=3.7e-07  Score=66.80  Aligned_cols=54  Identities=22%  Similarity=0.276  Sum_probs=41.2

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHH-HHHHHcCCCCCccEEEECCE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTL-LNCLAGRVKLDSGVIRLNKE   83 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTL-l~~l~gl~~~~~G~i~~~g~   83 (121)
                      .+.++++.+.+++.         +++|+++.|+|+|||||||| +++++++.+.....+++...
T Consensus         7 ~~~~~~ld~~l~gg---------i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e   61 (230)
T PRK08533          7 ELSRDELHKRLGGG---------IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ   61 (230)
T ss_pred             EEEEeeeehhhCCC---------CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence            35566777666542         79999999999999999999 68888876665555666543

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.38  E-value=4.2e-07  Score=78.19  Aligned_cols=71  Identities=17%  Similarity=0.369  Sum_probs=42.6

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHH---HHcCCCC------CccEEEECCEeCCh-hhcc
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNC---LAGRVKL------DSGVIRLNKERLNK-RWKR   91 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~---l~gl~~~------~~G~i~~~g~~~~~-~~~~   91 (121)
                      |+++|+. +|.+.     +++.+.+ .+++|+|||||||||||.+   ++|...+      ..+++.+.|..... ....
T Consensus         5 l~~~nf~-s~~~~-----~~i~f~~-~~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~~~~~~   77 (1179)
T TIGR02168         5 LELAGFK-SFADP-----TTINFDK-GITGIVGPNGCGKSNIVDAIRWVLGEQSAKALRGGKMEDVIFNGSETRKPLSLA   77 (1179)
T ss_pred             EEEeCcc-ccCCC-----eeEEecC-CcEEEECCCCCChhHHHHHHHHHHcCCchhhhhhccchhhhcCCCcccCCCCee
Confidence            5555554 34322     2345555 4999999999999999965   5564432      23566666653221 1234


Q ss_pred             cEEEEeeC
Q psy16345         92 KICYVLQQ   99 (121)
Q Consensus        92 ~i~~v~Q~   99 (121)
                      .|.+++++
T Consensus        78 ~v~~~~~~   85 (1179)
T TIGR02168        78 EVELVFDN   85 (1179)
T ss_pred             EEEEEEec
Confidence            57777775

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR01069 mutS2 MutS2 family protein

Probab=98.37  E-value=1.8e-07  Score=78.93  Aligned_cols=55  Identities=27%  Similarity=0.350  Sum_probs=38.6

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCC-eEEEEECCCCchHHHHHHHHHcC-CCCCcc
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPG-ELLAVMGPSGCGKTTLLNCLAGR-VKLDSG   76 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G-~~~~liG~nGsGKSTLl~~l~gl-~~~~~G   76 (121)
                      +.++++.+.+-...-.-.+++++..+ ++++|+||||+|||||||+|++. +.+..|
T Consensus       296 i~l~~~rhPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G  352 (771)
T TIGR01069       296 IILENARHPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG  352 (771)
T ss_pred             EEEccccCceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC
Confidence            66666554331111133478888877 99999999999999999999987 333334

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.36  E-value=1.1e-06  Score=56.83  Aligned_cols=38  Identities=45%  Similarity=0.782  Sum_probs=30.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCCCCCc-cEEEECCE
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRVKLDS-GVIRLNKE   83 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~~~-G~i~~~g~   83 (121)
                      .+..+.|+||+|+||||+++.|+..+.... +-+.++..
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~   39 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE   39 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE
Confidence            367899999999999999999999876654 45566554

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.34  E-value=4.9e-07  Score=64.30  Aligned_cols=33  Identities=33%  Similarity=0.524  Sum_probs=28.6

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCCCCccEEEEC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN   81 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~   81 (121)
                      .++|+|+||+|||||++.|.|...+.+|.+..+
T Consensus         3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~   35 (197)
T cd04104           3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTG   35 (197)
T ss_pred             EEEEECCCCCCHHHHHHHHhccCCCCCCccccC
Confidence            378999999999999999999887777776655

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK15494 era GTPase Era; Provisional

Probab=98.34  E-value=3.5e-07  Score=70.44  Aligned_cols=50  Identities=26%  Similarity=0.316  Sum_probs=44.7

Q ss_pred             EEEEeeeEEEcCC-cceEEeeEEEEeCCe-------EEEEECCCCchHHHHHHHHHcC
Q psy16345         21 ELVFSGLSVTLDK-RPILKDVSGVVKPGE-------LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        21 ~i~~~~l~~~~~~-~~~l~~vsl~i~~G~-------~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++.++++++|.. ...+..++++++.|+       .++|+|.+|+|||||++.|.|-
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~   75 (339)
T PRK15494         18 DTEALAAAVREDASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE   75 (339)
T ss_pred             ccccccccccCCCCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence            4778899988864 568999999999999       9999999999999999999875

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.33  E-value=3.4e-07  Score=72.46  Aligned_cols=27  Identities=44%  Similarity=0.758  Sum_probs=24.9

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +.+|++++|+||||+||||+++.|++.
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtlakLA~~  214 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTTAKLAAR  214 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999999999874

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=98.33  E-value=9.9e-07  Score=76.60  Aligned_cols=47  Identities=30%  Similarity=0.448  Sum_probs=37.2

Q ss_pred             ccEEEEeeeEEEcCCcceEEeeEEE---EeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         19 PLELVFSGLSVTLDKRPILKDVSGV---VKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~~~~l~~vsl~---i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      +..|.++|+.-..+..    .|+|+   +..+.+++|+|||||||||+|.+|+.
T Consensus         3 ~~~l~~~nf~s~~~~~----~idf~~~~l~~~~l~~I~G~tGaGKStildai~~   52 (1047)
T PRK10246          3 ILSLRLKNLNSLKGEW----KIDFTAEPFASNGLFAITGPTGAGKTTLLDAICL   52 (1047)
T ss_pred             ceEEEeecceeEcCCc----eEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3468888887443332    58888   44589999999999999999999985

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.33  E-value=5.6e-07  Score=62.77  Aligned_cols=34  Identities=35%  Similarity=0.602  Sum_probs=24.8

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCCCCCccEEE
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR   79 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~   79 (121)
                      ++++++++|+||+|||||++.|.+-.....|+|.
T Consensus        34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is   67 (161)
T PF03193_consen   34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEIS   67 (161)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence            4589999999999999999999997665556665

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=98.32  E-value=1.2e-06  Score=72.72  Aligned_cols=44  Identities=20%  Similarity=0.357  Sum_probs=35.3

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCe-EEEEECCCCchHHHHHHHHH
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGE-LLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~-~~~liG~nGsGKSTLl~~l~   68 (121)
                      .|.++|+...++.    +.++|...+|+ ++.|+|+||+|||||+++|.
T Consensus         5 ~l~l~nf~~~~~~----~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~   49 (650)
T TIGR03185         5 QLTLENFGPYRGR----QTFDLSPSSPKPIILIGGLNGAGKTTLLDAIQ   49 (650)
T ss_pred             EEEEeceEEEcCC----ceeeeecCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            4788888765553    46778877765 89999999999999999873

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=98.31  E-value=5.9e-07  Score=71.13  Aligned_cols=39  Identities=28%  Similarity=0.489  Sum_probs=34.5

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCCCCC---ccEEEECCEeCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRVKLD---SGVIRLNKERLN   86 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~   86 (121)
                      =++||.|++|||||||++.|.+++.+.   .|.|.++|..+.
T Consensus       213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt  254 (460)
T PLN03046        213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLT  254 (460)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCC
Confidence            689999999999999999999988765   688899988775

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=98.31  E-value=1.7e-07  Score=65.84  Aligned_cols=43  Identities=26%  Similarity=0.397  Sum_probs=34.2

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc-cEEEECCEeC
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS-GVIRLNKERL   85 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~-G~i~~~g~~~   85 (121)
                      ...+|++++|.|++||||||+.+.|.+.+.... +.+.+++.++
T Consensus        14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~   57 (184)
T TIGR00455        14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV   57 (184)
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence            347899999999999999999999999875322 2567777554

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=98.30  E-value=9.3e-07  Score=61.17  Aligned_cols=34  Identities=26%  Similarity=0.469  Sum_probs=27.2

Q ss_pred             EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ....++.+.++.++.|+|||||||||+++++...
T Consensus        11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~   44 (162)
T cd03227          11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLA   44 (162)
T ss_pred             EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3445556666679999999999999999998544

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.30  E-value=2.6e-06  Score=65.75  Aligned_cols=41  Identities=29%  Similarity=0.533  Sum_probs=33.5

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCC-CCccEEEECCEeC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVK-LDSGVIRLNKERL   85 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~-~~~G~i~~~g~~~   85 (121)
                      .++..+.|.||+||||||++++|.+.+. +..+.|.....++
T Consensus       120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~  161 (343)
T TIGR01420       120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPI  161 (343)
T ss_pred             hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCCh
Confidence            4678999999999999999999998665 4567887766554

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.29  E-value=5.6e-07  Score=71.74  Aligned_cols=51  Identities=29%  Similarity=0.468  Sum_probs=38.8

Q ss_pred             eeEEEcCCcceEEeeEE-EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccE
Q psy16345         26 GLSVTLDKRPILKDVSG-VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV   77 (121)
Q Consensus        26 ~l~~~~~~~~~l~~vsl-~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~   77 (121)
                      ++..+|+.. -++=-.| ..++|+++||+|+||-||||.+|+|+|.+.|.=|+
T Consensus        79 e~vHRYg~N-gFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~  130 (591)
T COG1245          79 EVVHRYGVN-GFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGR  130 (591)
T ss_pred             cceeeccCC-ceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCC
Confidence            456677542 1222333 45899999999999999999999999999987664

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.29  E-value=5.1e-07  Score=67.73  Aligned_cols=63  Identities=29%  Similarity=0.443  Sum_probs=43.8

Q ss_pred             EEEeeeEEEcCC--cceEEeeEEEEe-------CCeEEEEECCCCchHHHHHHHHHcCCCC---CccEEEECCEe
Q psy16345         22 LVFSGLSVTLDK--RPILKDVSGVVK-------PGELLAVMGPSGCGKTTLLNCLAGRVKL---DSGVIRLNKER   84 (121)
Q Consensus        22 i~~~~l~~~~~~--~~~l~~vsl~i~-------~G~~~~liG~nGsGKSTLl~~l~gl~~~---~~G~i~~~g~~   84 (121)
                      +.+++.++.+..  +.+++++++.+.       +|++++++|+||+||||+++.|++.+..   ..|-|..++..
T Consensus        41 i~f~~~~~~~~~vl~~v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r  115 (270)
T PRK06731         41 VKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  115 (270)
T ss_pred             EEecCCCccccHHHHHHhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            555555554433  345777777776       4589999999999999999999887532   33445555443

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.27  E-value=3e-07  Score=69.64  Aligned_cols=45  Identities=20%  Similarity=0.358  Sum_probs=38.2

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEE
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI   78 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i   78 (121)
                      +.+++++++...++.+++|+|++|||||||++.+...+......+
T Consensus        21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v   65 (300)
T TIGR00750        21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKV   65 (300)
T ss_pred             HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence            458999999999999999999999999999999998665443344

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=98.26  E-value=1.8e-06  Score=64.53  Aligned_cols=33  Identities=27%  Similarity=0.530  Sum_probs=28.1

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      -++++.+++.+| +.+|+|||||||||++.+|.=
T Consensus        11 ~~~~~~i~~~~~-~~~i~G~nGsGKS~il~ai~~   43 (276)
T cd03241          11 LIEELELDFEEG-LTVLTGETGAGKSILLDALSL   43 (276)
T ss_pred             ceeeeEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence            357778888776 899999999999999999863

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.25  E-value=1.2e-06  Score=66.23  Aligned_cols=43  Identities=23%  Similarity=0.250  Sum_probs=35.3

Q ss_pred             EEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe
Q psy16345         42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER   84 (121)
Q Consensus        42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~   84 (121)
                      |.=+.+.+++|+|++||||||||+.+.+.+....+.+.+.|..
T Consensus        99 ~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~  141 (290)
T PRK10463         99 FAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQ  141 (290)
T ss_pred             HHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCc
Confidence            4456799999999999999999999999877666666776654

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.25  E-value=6.9e-07  Score=59.50  Aligned_cols=21  Identities=43%  Similarity=0.746  Sum_probs=19.9

Q ss_pred             EEEECCCCchHHHHHHHHHcC
Q psy16345         50 LAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ++|+|++|||||||++.|.+.
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            689999999999999999987

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PRK08927 fliI flagellum-specific ATP synthase; Validated

Probab=98.25  E-value=1.4e-06  Score=69.24  Aligned_cols=39  Identities=26%  Similarity=0.325  Sum_probs=35.0

Q ss_pred             EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc
Q psy16345         37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS   75 (121)
Q Consensus        37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~   75 (121)
                      .-|.-|.+.+|++++|+|+||+|||||+++|++...++.
T Consensus       148 ~ID~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~~d~  186 (442)
T PRK08927        148 ALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADADV  186 (442)
T ss_pred             EEeeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCE
Confidence            446668999999999999999999999999999988764

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=98.24  E-value=1e-06  Score=62.16  Aligned_cols=36  Identities=39%  Similarity=0.469  Sum_probs=29.8

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCCCCC---ccEEEECCE
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRVKLD---SGVIRLNKE   83 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~   83 (121)
                      -+++|+|++|||||||++.|..++.+.   -|.|...+.
T Consensus         7 ~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~   45 (173)
T PRK10751          7 PLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   45 (173)
T ss_pred             eEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            489999999999999999999887653   378887554

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.23  E-value=1.4e-06  Score=64.64  Aligned_cols=33  Identities=27%  Similarity=0.457  Sum_probs=30.0

Q ss_pred             EEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC
Q psy16345         42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD   74 (121)
Q Consensus        42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~   74 (121)
                      +.+.+|+.++|+|++|+|||||++.|++.....
T Consensus        11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~   43 (249)
T cd01128          11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKN   43 (249)
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence            478899999999999999999999999987654

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.23  E-value=6.9e-07  Score=69.76  Aligned_cols=37  Identities=41%  Similarity=0.717  Sum_probs=32.8

Q ss_pred             ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        35 ~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +++++.++.+.+|++++|+||||+||||++..|+...
T Consensus       125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4577788889999999999999999999999998754

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=98.22  E-value=1.4e-06  Score=67.34  Aligned_cols=39  Identities=26%  Similarity=0.418  Sum_probs=34.3

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECC
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNK   82 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g   82 (121)
                      ++.+..+.|.|++|||||||+++|++.+++...-+.+.+
T Consensus       159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd  197 (344)
T PRK13851        159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIED  197 (344)
T ss_pred             HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECC
Confidence            557788999999999999999999999998887777665

>TIGR00618 sbcc exonuclease SbcC

Probab=98.22  E-value=1.7e-06  Score=74.98  Aligned_cols=44  Identities=25%  Similarity=0.491  Sum_probs=33.2

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      ..|+++|+. +|++..   .|+|+-. +.+++|+|||||||||+|.+|+
T Consensus         4 ~~L~l~nf~-s~~~~~---~idF~~~-~gl~~I~G~nGaGKSTildAI~   47 (1042)
T TIGR00618         4 LRLTLKNFG-SYKGTH---TIDFTAL-GPIFLICGKTGAGKTTLLDAIT   47 (1042)
T ss_pred             eEEEEeCee-ccCCCc---eeeecCC-CCeEEEECCCCCCHHHHHHHHH
Confidence            457888886 465442   2455533 2799999999999999999998

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PLN02165 adenylate isopentenyltransferase

Probab=98.21  E-value=1.3e-06  Score=67.31  Aligned_cols=42  Identities=24%  Similarity=0.411  Sum_probs=34.2

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCC---CCccEE-EECCEeCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVK---LDSGVI-RLNKERLN   86 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~---~~~G~i-~~~g~~~~   86 (121)
                      ++|.+++|+||+|||||||...|++.+.   .+.+++ .|.|.++.
T Consensus        41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIg   86 (334)
T PLN02165         41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKIT   86 (334)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccc
Confidence            6788999999999999999999999865   345666 45777763

>PRK07429 phosphoribulokinase; Provisional

Probab=98.21  E-value=1.6e-06  Score=66.72  Aligned_cols=32  Identities=44%  Similarity=0.571  Sum_probs=27.8

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCCCCCccEEE
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR   79 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~   79 (121)
                      =++||.|+||||||||++.|++++.+..+.+.
T Consensus         9 ~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi   40 (327)
T PRK07429          9 VLLGVAGDSGCGKTTFLRGLADLLGEELVTVI   40 (327)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhHhccCceEEE
Confidence            38999999999999999999999887765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	121
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		2e-14
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		8e-08
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		1e-07
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		1e-07
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		3e-07
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		3e-07
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		7e-07
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		7e-07
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		7e-07
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		1e-06
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		2e-06
2d3w_A	248	Crystal Structure Of Escherichia Coli Sufc, An Atpa		2e-06
2zu0_C	267	Crystal Structure Of Sufc-Sufd Complex Involved In		2e-06
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		3e-06
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		3e-06
2d2e_A	250	Crystal Structure Of Atypical Cytoplasmic Abc-Atpas		3e-06
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		3e-06
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		3e-06
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		4e-06
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		4e-06
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		4e-06
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		9e-06
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		9e-06
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		2e-05
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		2e-05
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		3e-05
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		3e-05
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		3e-05
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		3e-05
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		3e-05
2bbt_A	290	Human Deltaf508 Nbd1 With Two Solublizing Mutations		4e-05
1q3h_A	286	Mouse Cftr Nbd1 With Amp.Pnp Length = 286		5e-05
1xfa_A	283	Structure Of Nbd1 From Murine Cftr- F508r Mutant Le		5e-05
1r0z_A	286	Phosphorylated Cystic Fibrosis Transmembrane Conduc		5e-05
1xf9_A	283	Structure Of Nbd1 From Murine Cftr- F508s Mutant Le		5e-05
3si7_A	285	The Crystal Structure Of The Nbd1 Domain Of The Mou		5e-05
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		6e-05
2bbs_A	290	Human Deltaf508 Nbd1 With Three Solubilizing Mutati		6e-05
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		6e-05
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		7e-05
1g29_1	372	Malk Length = 372		8e-05
2bbo_A	291	Human Nbd1 With Phe508 Length = 291		9e-05
1xmj_A	290	Crystal Structure Of Human Deltaf508 Human Nbd1 Dom		1e-04
2pzg_A	241	Minimal Human Cftr First Nucleotide Binding Domain		1e-04
2pze_A	229	Minimal Human Cftr First Nucleotide Binding Domain		1e-04
2pzf_A	228	Minimal Human Cftr First Nucleotide Binding Domain		1e-04
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		2e-04
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		2e-04
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		2e-04
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		2e-04
3ozx_A	538	Crystal Structure Of Abce1 Of Sulfolubus Solfataric		2e-04
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		2e-04
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		3e-04
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		3e-04
1ji0_A	240	Crystal Structure Analysis Of The Abc Transporter F		5e-04
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		6e-04
3gd7_A	390	Crystal Structure Of Human Nbd2 Complexed With N6-		7e-04

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 60/98 (61%), Gaps = 6/98 (6%)
Query: 27  LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN 86
           LS +    P+L D+S  + PGE+L ++G SGCGKTTLL CLAG  + DSG I L+ + + 
Sbjct: 10  LSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIF 69
Query: 87  KR------WKRKICYVLQQDIFFPELTLRQTLEVSIAD 118
            +       +R++ Y++Q+ + FP LT+ + +   + +
Sbjct: 70  SKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGN 107

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 10  PEKYPLSHRPLELVFSGLSVTLDKR-PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA 68
           P+   L     E+ F  +  + DK+ P+LKD++  +KPG+ +A++GP+G GKTT++N L 
Sbjct: 343 PDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM 402
Query: 69  GRVKLDSGVIRLNKERLNK----RWKRKICYVLQQDIFFPELTLRQTLE 113
               +D G I ++   + K      +  I  VLQ  I F   T+++ L+
Sbjct: 403 RFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILF-STTVKENLK 450

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 37  LKDVSGV---VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKR 91
           +K V GV   VK GE +A++GPSGCGKTT L  LAG  K  SG I  +   +N      R
Sbjct: 16  VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYR 75
Query: 92  KICYVLQQDIFFPELTLRQTL 112
           ++  V Q    +P +T+ + +
Sbjct: 76  EVGMVFQNYALYPHMTVFENI 96

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 2   VSNIPSLPPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKT 61
           V ++P   P ++       E V    +   D R  L+DVS  V PG+ LA++GPSG GK+
Sbjct: 38  VKDLPGAGPLRFQKGRIEFENVHFSYA---DGRETLQDVSFTVMPGQTLALVGPSGAGKS 94
Query: 62  TLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYVLQQDIFFPE 105
           T+L  L     + SG IR++ + +++      +  I  V Q  + F +
Sbjct: 95  TILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND 142

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLN---CL----AGRVKLDS-GVIRLNKERLNKR 88
           LK+V+  +K GE +++MGPSG GK+T+LN   CL     G V +D+     L+ + L K 
Sbjct: 21  LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 89  WKRKICYVLQQDIFFPELTLRQTLEV 114
            + KI +V QQ    P LT  + +E+
Sbjct: 81  RRDKIGFVFQQFNLIPLLTALENVEL 106

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLN---CL----AGRVKLDS-GVIRLNKERLNKR 88
           LK+V+  +K GE +++MGPSG GK+T+LN   CL     G V +D+     L+ + L K 
Sbjct: 21  LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 89  WKRKICYVLQQDIFFPELTLRQTLEV 114
            + KI +V QQ    P LT  + +E+
Sbjct: 81  RRDKIGFVFQQFNLIPLLTALENVEL 106

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 36  ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKI 93
           + KD++  +  GE +  +GPSGCGK+TLL  +AG   + SG + + ++R+N     +R +
Sbjct: 18  VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 77
Query: 94  CYVLQQDIFFPELTLRQTLEVSI 116
             V Q    +P L++ + +   +
Sbjct: 78  GMVFQSYALYPHLSVAENMSFGL 100

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 36  ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKI 93
           + KD++  +  GE +  +GPSGCGK+TLL  +AG   + SG + + ++R+N     +R +
Sbjct: 18  VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 77
Query: 94  CYVLQQDIFFPELTLRQTLEVSI 116
             V Q    +P L++ + +   +
Sbjct: 78  GMVFQSYALYPHLSVAENMSFGL 100

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 36  ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKI 93
           + KD++  +  GE +  +GPSGCGK+TLL  +AG   + SG + + ++R+N     +R +
Sbjct: 18  VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 77
Query: 94  CYVLQQDIFFPELTLRQTLEVSI 116
             V Q    +P L++ + +   +
Sbjct: 78  GMVFQSYALYPHLSVAENMSFGL 100

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKIC 94
           L +++  +K GE +A++GPSG GK+TLL  +AG  K  SG I  +++ + +     R + 
Sbjct: 19  LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVG 78
Query: 95  YVLQQDIFFPELTLRQTL 112
            V Q    +P +T+ + +
Sbjct: 79  LVFQNWALYPHMTVYKNI 96

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 15/94 (15%)
Query: 21   ELVFSGLSVTLDKRP---ILKDVSGVVKPGELLAVMGPSGCGKTTLL-------NCLAGR 70
            +++F  +     +RP   ILK +S  V+PG+ LA++GPSGCGK+T++       + L G 
Sbjct: 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE 1135
Query: 71   VKLDSGVIR-LNKERLNKRWKRKICYVLQQDIFF 103
            + +D   I+ LN E      + +I  V Q+   F
Sbjct: 1136 IFIDGSEIKTLNPEHT----RSQIAIVSQEPTLF 1165

>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 27 LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70
          L V+++ + IL+ +S  V PGE+ A+MGP+G GK+TL   LAGR
Sbjct: 7  LHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 50

>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 27 LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70
          L V+++ + IL+ +S  V PGE+ A+MGP+G GK+TL   LAGR
Sbjct: 26 LHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRW--KRKIC 94
           L ++S  V+ GE   ++GP+G GKT  L  +AG    DSG I L+ + +      K  I 
Sbjct: 16  LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 95  YVLQQDIFFPELTLRQTLEVSI 116
           +V Q    FP + +++ LE  +
Sbjct: 76  FVYQNYSLFPHMNVKKNLEFGM 97

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 25 SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84
          S L   + ++ ++ DVS  +  GE++A++GP+G GK+TLL  L G +    G   L  + 
Sbjct: 15 SHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQN 74
Query: 85 LNKRWKRK 92
          LN  W+ K
Sbjct: 75 LNS-WQPK 81

>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 27  LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG--RVKLDSGVIRLNKER 84
           L  ++D   ILK V+ VV  GE+ A+MGP+G GK+TL   LAG     ++ G I L+ E 
Sbjct: 9   LWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGEN 68
Query: 85  L-----NKRWKRKICYVLQQDIFFPELTLRQTLEVSI 116
           +     ++R ++ +    Q  +  P +T+   L +++
Sbjct: 69  ILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLAL 105

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 15/91 (16%)
Query: 24   FSGLSVTLDKRP---ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKL 73
            FSG+      RP   +L+ +S  VK G+ LA++G SGCGK+T++  L       AG V L
Sbjct: 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092
Query: 74   DSGVIRLNKERLNKRWKR-KICYVLQQDIFF 103
            D   I+    +LN +W R ++  V Q+ I F
Sbjct: 1093 DGKEIK----QLNVQWLRAQLGIVSQEPILF 1119

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 15/91 (16%)
Query: 24   FSGLSVTLDKRP---ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKL 73
            FSG+      RP   +L+ +S  VK G+ LA++G SGCGK+T++  L       AG V L
Sbjct: 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092
Query: 74   DSGVIRLNKERLNKRWKR-KICYVLQQDIFF 103
            D   I+    +LN +W R ++  V Q+ I F
Sbjct: 1093 DGKEIK----QLNVQWLRAQLGIVSQEPILF 1119

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 15  LSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD 74
           LS R ++  +       D   IL+D+S   +P  ++A  GPSG GK+T+ + L    +  
Sbjct: 2   LSARHVDFAYD------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT 55
Query: 75  SGVIRLNKERLN----KRWKRKICYVLQQDIFFPELTLRQT----LEVSIADED 120
           +G I ++ + ++    + W+ +I +V  QD      T+R+     LE    DED
Sbjct: 56  AGEITIDGQPIDNISLENWRSQIGFV-SQDSAIMAGTIRENLTYGLEGDYTDED 108

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLN---CL----AGRVKLDS-GVIRLNKERLNKR 88
           LK+V+  +K GE +++ GPSG GK+T LN   CL     G V +D+     L+ + L K 
Sbjct: 21  LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 89  WKRKICYVLQQDIFFPELTLRQTLEV 114
            + KI +V QQ    P LT  + +E+
Sbjct: 81  RRDKIGFVFQQFNLIPLLTALENVEL 106

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 36  ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA-------GRVKLDSG-VIRLNKERLNK 87
           ILK +S  VK GE ++++G SG GK+TLL  L        G+V L+   V   N++ L+ 
Sbjct: 19  ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 88  RWKRKICYVLQQDIFFPELT 107
              RK+ +V Q     PELT
Sbjct: 79  LRNRKLGFVFQFHYLIPELT 98

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 36  ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKERLNKR 88
           +LK ++  ++ GE++ V+GPSG GK+T L CL        G + +D   ++     LNK 
Sbjct: 18  VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK- 76
Query: 89  WKRKICYVLQQDIFFPELTLRQTLEVS 115
            + ++  V Q+   FP +T+   + ++
Sbjct: 77  VREEVGMVFQRFNLFPHMTVLNNITLA 103

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 36  ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKERLNKR 88
           +LK ++  ++ GE++ V+GPSG GK+T L CL        G + +D   ++     LNK 
Sbjct: 39  VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK- 97
Query: 89  WKRKICYVLQQDIFFPELTLRQTLEVS 115
            + ++  V Q+   FP +T+   + ++
Sbjct: 98  VREEVGMVFQRFNLFPHMTVLNNITLA 124

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWK------ 90
           +KD+S  +K GE L ++GPSGCGKTT L  +AG  +   G I +    +    K      
Sbjct: 22  VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 91  --RKICYVLQQDIFFPELTLRQTL 112
             R +  V Q    +P  T+   +
Sbjct: 82  KERDVAXVFQSYALYPHXTVYDNI 105

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 12/77 (15%)
Query: 35  PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKERLNK 87
           PI +D S  +  G + A++GPSG GK+T+L+ L       +G + LD   IR    +LN 
Sbjct: 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIR----QLNP 413
Query: 88  RWKR-KICYVLQQDIFF 103
            W R KI  V Q+ I F
Sbjct: 414 VWLRSKIGTVSQEPILF 430

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 12/77 (15%)
Query: 35  PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKERLNK 87
           PI +D S  +  G + A++GPSG GK+T+L+ L       +G + LD   IR    +LN 
Sbjct: 389 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIR----QLNP 444
Query: 88  RWKR-KICYVLQQDIFF 103
            W R KI  V Q+ I F
Sbjct: 445 VWLRSKIGTVSQEPILF 461

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKIC 94
           ++ VS  ++ GE++ ++GPSG GKTT+L  +AG  +   G + +  +R+      KR + 
Sbjct: 31  VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90
Query: 95  YVLQQDIFFPELTL 108
            V Q    F  +T+
Sbjct: 91  LVFQNYALFQHMTV 104

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN----KERLNK 87
           ++ PILKD++  ++ GE +A +G SG GK+TL+N +     + SG I ++    K+ L  
Sbjct: 352 NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG 411
Query: 88  RWKRKICYVLQQDIFFPE 105
             + +I  V Q +I F +
Sbjct: 412 SLRNQIGLVQQDNILFSD 429

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 33  KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRK 92
           ++  L++VS V+  GE L V G +G GK+TLL  +AG ++  SG +  + ER      R+
Sbjct: 19  EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRR 78
Query: 93  ---ICYVLQQDIFFPE 105
              I +   +D FF E
Sbjct: 79  NIGIAFQYPEDQFFAE 94

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 33  KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRK 92
           ++  L++VS V+  GE L V G +G GK+TLL  +AG ++  SG +  + ER      R+
Sbjct: 21  EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRR 80
Query: 93  ---ICYVLQQDIFFPE 105
              I +   +D FF E
Sbjct: 81  NIGIAFQYPEDQFFAE 96

>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
          L FS  S  L   P+LKD++  ++ G+LLAV G +G GKT+LL  + G ++   G I+
Sbjct: 41 LFFSNFS--LLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96

>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 32/45 (71%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
          P+LK+++  ++ GE+LA+ G +G GKT+LL  + G ++   G+I+
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK 96

>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 32/45 (71%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
          P+LK+++  ++ GE+LA+ G +G GKT+LL  + G ++   G+I+
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK 96

>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 32/45 (71%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
          P+LK+++  ++ GE+LA+ G +G GKT+LL  + G ++   G+I+
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK 96

>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 32/45 (71%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
          P+LK+++  ++ GE+LA+ G +G GKT+LL  + G ++   G+I+
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK 96

>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 32/45 (71%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
          P+LK+++  ++ GE+LA+ G +G GKT+LL  + G ++   G+I+
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK 96

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 31 LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
          + K+ ILK +S  ++ GE+  ++GP+G GKTT L  ++  +K  SG++
Sbjct: 25 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72

>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
          L FS  S  L   P+LKD++  ++ G+LLAV G +G GKT+LL  + G ++   G I+
Sbjct: 41 LSFSNFS--LLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
          L FS  S  L   P+LKD++  ++ G+LLAV G +G GKT+LL  + G ++   G I+
Sbjct: 41 LSFSNFS--LLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 11/86 (12%)
Query: 35  PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKERLNK 87
           P+L  V+  VKPG L+AV+G +G GK+TL+N +        GRV++D   +R  K    K
Sbjct: 357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKL---K 413
Query: 88  RWKRKICYVLQQDIFFPELTLRQTLE 113
             +  I  V Q+ + F   T+++ L+
Sbjct: 414 DLRGHISAVPQETVLFSG-TIKENLK 438

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWK------ 90
           ++++S  VK GE + ++GPSGCGKTT L  +AG  +   G I +  + +    K      
Sbjct: 19  VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 91  --RKICYVLQQDIFFPELTL 108
             R I  V Q    +P +T+
Sbjct: 79  KDRDIAMVFQSYALYPHMTV 98

>pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
          P+LKD++  ++ G+LLAV G +G GKT+LL  + G ++   G I+
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96

>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
          P+LKD++  ++ G+LLAV G +G GKT+LL  + G ++   G I+
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96

>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
          P+LKD++  ++ G+LLAV G +G GKT+LL  + G ++   G I+
Sbjct: 34 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 78

>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
          P+LKD++  ++ G+LLAV G +G GKT+LL  + G ++   G I+
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66

>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
          P+LKD++  ++ G+LLAV G +G GKT+LL  + G ++   G I+
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 52  VMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKICYVLQQDIFFPELTLR 109
           ++GP+G GK+  L  +AG VK D G +RLN   +      +R I +V Q    FP L++ 
Sbjct: 29  LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVY 88
Query: 110 QTLEVSI 116
           + +   +
Sbjct: 89  RNIAYGL 95

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 44  VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--KRWKRKICYVLQQDI 101
           +K GE L ++GPSGCGKTT L  +AG  +   G I      +       R I  V Q   
Sbjct: 34  IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYA 93
Query: 102 FFPELTLRQTL 112
            +P +T+ + +
Sbjct: 94  VWPHMTVYENI 104

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 44  VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--KRWKRKICYVLQQDI 101
           +K GE L ++GPSGCGKTT L  +AG  +   G I      +       R I  V Q   
Sbjct: 35  IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYA 94
Query: 102 FFPELTLRQTL 112
            +P +T+ + +
Sbjct: 95  VWPHMTVYENI 105

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL-NKERLNKR 88
          L  VS  V  G++  ++GP+G GK+TL+N + G +K D G +   NK+  NK 
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE 75

>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 41  SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKR 91
           +G  K GE++ ++GP+G GKTT    L G +  D G +   K+ L+ + +R
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQR 338

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL-NKERLNKR 88
          L  VS  V  G++  ++GP+G GK+TL+N + G +K D G +   NK+  NK 
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE 75

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA-------GRVKLDSGVIRLNKERLNKRW 89
           L +V+  ++ GE   ++GPSG GKTT +  +A       G +  D  ++  N + +    
Sbjct: 21  LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 90  KRKICYVLQQDIFFPELTLRQTL 112
            RKI  V Q    +P LT  + +
Sbjct: 81  DRKIGMVFQTWALYPNLTAFENI 103

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA-------GRVKLDSGVIRLNKERLNKRW 89
           L +V+  ++ GE   ++GPSG GKTT +  +A       G +  D  ++  N + +    
Sbjct: 21  LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 90  KRKICYVLQQDIFFPELTLRQTL 112
            RKI  V Q    +P LT  + +
Sbjct: 81  DRKIGMVFQTWALYPNLTAFENI 103

>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 47  GELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR-----WKRKICYVLQQDI 101
           G+++ ++G +G GKTT L+ +AG V+   G I  N + +  +      +  I  V +   
Sbjct: 32  GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 102 FFPELTLRQTL 112
            FPELT+ + L
Sbjct: 92  IFPELTVYENL 102

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL-NKERLNKR 88
          L  VS  V  G++  ++GP+G GK+TL+N + G +K D G +   NK+  NK 
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE 75

>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 36  ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL------AGRVKLDSGVIRLNKERLNKRW 89
           IL+++S  + PG+ + ++G +G GK+TLL+         G +++D     ++ + +    
Sbjct: 36  ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDG----VSWDSITLEQ 91
Query: 90  KRKICYVLQQDIFFPELTLRQTLEVSIADEDE 121
            RK   V+ Q +F    T R+ L+ + A  D+
Sbjct: 92  WRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQ 123

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	121
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	5e-18
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	7e-18
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	4e-16
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	2e-15
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	8e-07
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	3e-15
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-09
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	5e-15
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	6e-15
1ji0_A	240	ABC transporter; ATP binding protein, structural g	8e-15
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	1e-14
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	8e-10
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	3e-14
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	4e-14
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	1e-09
1sgw_A	214	Putative ABC transporter; structural genomics, P p	4e-14
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	1e-13
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	2e-13
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	3e-13
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	4e-13
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	1e-12
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	1e-12
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	2e-12
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	2e-12
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	2e-12
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	2e-12
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	3e-12
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	3e-12
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	3e-12
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	7e-12
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	7e-12
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	8e-12
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	9e-12
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	1e-11
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	1e-11
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	1e-11
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	2e-11
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	2e-11
2ghi_A	260	Transport protein; multidrug resistance protein, M	2e-11
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	3e-11
1g6h_A	257	High-affinity branched-chain amino acid transport	4e-11
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	7e-11
1b0u_A	262	Histidine permease; ABC transporter, transport pro	9e-11
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	3e-10
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	4e-10
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	4e-07
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	4e-10
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	5e-10
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	6e-10
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	8e-10
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	2e-08
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	2e-06
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	5e-06
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	1e-04
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	2e-04
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	3e-04
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	7e-04
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	8e-04

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 76.8 bits (190), Expect = 5e-18
 Identities = 37/95 (38%), Positives = 58/95 (61%), Gaps = 6/95 (6%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           L    LS +    P+L D+S  + PGE+L ++G SGCGKTTLL CLAG  + DSG I L+
Sbjct: 5   LHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLS 64

Query: 82  KERLNKR------WKRKICYVLQQDIFFPELTLRQ 110
            + +  +       +R++ Y++Q+ + FP LT+ +
Sbjct: 65  GKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYR 99

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 75.7 bits (187), Expect = 7e-18
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           +    +      + ILK +S  +  G+   + G +G GKTTLLN L       SG + L 
Sbjct: 22  IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81

Query: 82  KERLNK------RWKRKICYV---LQQDIFFPE 105
            +   K        ++ I +V   L +     E
Sbjct: 82  GKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGE 114

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 71.5 bits (176), Expect = 4e-16
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 35  PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRK 92
             ++ VS  ++ GE++ ++GPSG GKTT+L  +AG  +   G + +  +R+      KR 
Sbjct: 29  RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRN 88

Query: 93  ICYVLQQDIFFPELTLRQ 110
           +  V Q    F  +T+  
Sbjct: 89  VGLVFQNYALFQHMTVYD 106

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 10/117 (8%)

Query: 5   IPSLPPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLL 64
           I      +     R   + +  L         L+   G +K GE++ ++GP+G GKTT +
Sbjct: 271 IKFTKTGERVEIERETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFV 329

Query: 65  NCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSIADEDE 121
             LAG  +   G I  +           + Y  Q      E T+ + L    A +  
Sbjct: 330 KMLAGVEEPTEGKIEWDL---------TVAYKPQYIKADYEGTVYELLSKIDASKLN 377

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 45.4 bits (108), Expect = 8e-07
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK 72
              +     VVK G ++ ++GP+G GK+T +  LAG++ 
Sbjct: 33 VNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLI 72

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 69.3 bits (170), Expect = 3e-15
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 10/88 (11%)

Query: 33  KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRK 92
               L   +G  K GE++ ++GP+G GKTT    L G +  D G +   K+ L+ +    
Sbjct: 280 GDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYK---- 335

Query: 93  ICYVLQQDIFF-PELTLRQTLEVSIADE 119
                 Q IF   + T++Q LE +  D 
Sbjct: 336 -----PQRIFPNYDGTVQQYLENASKDA 358

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 37 LKDVS-GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG 76
           K       K   +L V+G +G GKTT+L  LAG +  + G
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFG 54

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 67.6 bits (166), Expect = 5e-15
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 33  KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRK 92
           +  + + ++  +  G++LAV+G +GCGK+TLL+ L G  +   G I +          + 
Sbjct: 17  ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY---------QS 67

Query: 93  ICYVLQQ-DIFFP 104
           I +V Q     F 
Sbjct: 68  IGFVPQFFSSPFA 80

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 68.0 bits (167), Expect = 6e-15
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKIC 94
           L ++S  V+ GE   ++GP+G GKT  L  +AG    DSG I L+ + +      K  I 
Sbjct: 16  LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75

Query: 95  YVLQQDIFFPELTLRQ 110
           +V Q    FP + +++
Sbjct: 76  FVYQNYSLFPHMNVKK 91

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 66.7 bits (164), Expect = 8e-15
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 5/98 (5%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           L    L V       +K +   V  G+++ ++G +G GKTT L+ +AG V+   G I  N
Sbjct: 7   LEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN 66

Query: 82  KERL-----NKRWKRKICYVLQQDIFFPELTLRQTLEV 114
            + +     +   +  I  V +    FPELT+ + L +
Sbjct: 67  GQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMM 104

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 27/114 (23%), Positives = 39/114 (34%), Gaps = 10/114 (8%)

Query: 6   PSLPPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLN 65
            +   E            +  L  T     +L    G     E+L +MG +G GKTTL+ 
Sbjct: 338 IADATEDLQNDSASRAFSYPSLKKTQGDF-VLNVEEGEFSDSEILVMMGENGTGKTTLIK 396

Query: 66  CLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSIADE 119
            LAG +K D G             K  +    Q+       T+RQ     I  +
Sbjct: 397 LLAGALKPDEGQD---------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQ 441

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 53.9 bits (130), Expect = 8e-10
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 8   LPPEKYPLS-----HRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTT 62
           +  +K P       + P  L  + ++                +PG++L ++G +G GK+T
Sbjct: 60  ICVKKCPFDAIQIINLPTNLE-AHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKST 118

Query: 63  LLNCLAGRVKLDSGVIRLNKE 83
            L  LAG+ K + G      E
Sbjct: 119 ALKILAGKQKPNLGRFDDPPE 139

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 65.3 bits (160), Expect = 3e-14
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 31  LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWK 90
           + +   L  +SG V+ GE+L ++GP+G GK+TLL  +AG +    G I+   + L   W 
Sbjct: 10  VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLE-AWS 67

Query: 91  -----RKICYVLQQDIFFPELTLRQTLE 113
                    Y+ QQ        +   L 
Sbjct: 68  ATKLALHRAYLSQQQTPPFATPVWHYLT 95

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 66.2 bits (162), Expect = 4e-14
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 33  KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRK 92
               L+   G ++ GE++ ++GP+G GKTT +  LAG  +   G +  +           
Sbjct: 368 GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL---------T 418

Query: 93  ICYVLQQDIFFPELTLRQTLEVSIADE 119
           + Y  Q      E T+ + L    + +
Sbjct: 419 VAYKPQYIKAEYEGTVYELLSKIDSSK 445

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 27  LSVTLDK--------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
           L   LD+           +     +VK G ++ ++GP+G GKTT +  LAG++  +    
Sbjct: 89  LPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED 148

Query: 79  RLNKE 83
             + +
Sbjct: 149 NDSWD 153

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 64.8 bits (159), Expect = 4e-14
 Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 37  LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYV 96
           L+ ++  ++ G ++   GP+G GKTTLL  ++  +K   G I  N   + K  K KI ++
Sbjct: 25  LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-VKGKIFFL 83

Query: 97  LQQDIFFPELTLRQTLE 113
            ++ I   ++++   L+
Sbjct: 84  PEEIIVPRKISVEDYLK 100

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 63.7 bits (156), Expect = 1e-13
 Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 8/80 (10%)

Query: 36  ILKDVSGVVKPGELLAVMGPSGCGKTTLLN---CL----AGRVKLD-SGVIRLNKERLNK 87
           ILK +S  VK GE ++++G SG GK+TLL     L     G+V L+   V   N++ L+ 
Sbjct: 19  ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78

Query: 88  RWKRKICYVLQQDIFFPELT 107
              RK+ +V Q     PELT
Sbjct: 79  LRNRKLGFVFQFHYLIPELT 98

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 63.3 bits (155), Expect = 2e-13
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 12/80 (15%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKER 84
           D   IL+D+S   +P  ++A  GPSG GK+T+ + L       AG + +D   I      
Sbjct: 13  DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPID----N 68

Query: 85  LNKRWKRK-ICYVLQQDIFF 103
           ++    R  I +V Q     
Sbjct: 69  ISLENWRSQIGFVSQDSAIM 88

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 62.6 bits (153), Expect = 3e-13
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 47  GELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKICYVLQQDIFFP 104
            +   ++GP+G GK+  L  +AG VK D G +RLN   +      +R I +V Q    FP
Sbjct: 24  RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFP 83

Query: 105 ELTLRQ 110
            L++ +
Sbjct: 84  HLSVYR 89

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 62.7 bits (153), Expect = 4e-13
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 9   PPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA 68
                       +   S  + +L   P+LKD++  ++ G+LLAV G +G GKT+LL  + 
Sbjct: 26  KQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIM 85

Query: 69  GRVKLDSGVIRLNKERLNKRWKRKICYVLQQ 99
           G ++   G I+ +          +I +  Q 
Sbjct: 86  GELEPSEGKIKHSG---------RISFCSQN 107

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 61.6 bits (150), Expect = 1e-12
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 30  TLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRW 89
              +R  L++++  V  GE + ++GP+G GKTTLL  ++G +   SG I +N   + K  
Sbjct: 14  KGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP-YSGNIFINGMEVRKI- 70

Query: 90  KRKICYVLQQ-DIFFPELTLRQ 110
           +  I Y     + +   +T+  
Sbjct: 71  RNYIRYSTNLPEAYEIGVTVND 92

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 61.0 bits (149), Expect = 1e-12
 Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 8/73 (10%)

Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLN---CL----AGRVKLD-SGVIRLNKERLN 86
            LK+V+  +K GE +++MGPSG GK+T+LN   CL     G V +D      L+ + L 
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT 78

Query: 87 KRWKRKICYVLQQ 99
          K  + KI +V QQ
Sbjct: 79 KIRRDKIGFVFQQ 91

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 60.6 bits (148), Expect = 2e-12
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 9/68 (13%)

Query: 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKR 91
             P+LKD++  ++ G+LLAV G +G GKT+LL  + G ++   G I+ +          
Sbjct: 19 GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------- 69

Query: 92 KICYVLQQ 99
          +I +  Q 
Sbjct: 70 RISFCSQF 77

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 61.4 bits (150), Expect = 2e-12
 Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 14/76 (18%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGV-IR-LNK 82
            K+P+LKD++  +KPG+ +A++GP+G GKTT++N L        G++ +D G+ IR + +
Sbjct: 366 KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVD-GIDIRKIKR 424

Query: 83  ERLNKRWKRKICYVLQ 98
             L    +  I  VLQ
Sbjct: 425 SSL----RSSIGIVLQ 436

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 60.3 bits (147), Expect = 2e-12
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 9/68 (13%)

Query: 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKR 91
             P L  ++  +  G L+AV+G  GCGK++LL+ L   +    G + +           
Sbjct: 16 SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--------- 66

Query: 92 KICYVLQQ 99
           + YV QQ
Sbjct: 67 SVAYVPQQ 74

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250

 Score = 60.2 bits (147), Expect = 3e-12
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK--LDSGVIR 79
          L    L  ++D   ILK V+ VV  GE+ A+MGP+G GK+TL   LAG  +  ++ G I 
Sbjct: 4  LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEIL 63

Query: 80 LNKERL 85
          L+ E +
Sbjct: 64 LDGENI 69

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 60.2 bits (147), Expect = 3e-12
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 12/80 (15%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKER 84
           D   IL +++  +K GE++ ++G SG GK+TL   +        G+V +D   +      
Sbjct: 20  DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA----L 75

Query: 85  LNKRWKRK-ICYVLQQDIFF 103
            +  W R+ +  VLQ ++  
Sbjct: 76  ADPNWLRRQVGVVLQDNVLL 95

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 60.7 bits (148), Expect = 3e-12
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 15/80 (18%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGV-IR-LNK 82
           ++ PILKD++  ++ GE +A +G SG GK+TL+N +       +G++ +D G  I+    
Sbjct: 352 NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILID-GHNIKDFLT 410

Query: 83  ERLNKRWKRKICYVLQQDIF 102
             L  R   +I  V  QD  
Sbjct: 411 GSL--R--NQIGLVQ-QDNI 425

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267

 Score = 59.1 bits (144), Expect = 7e-12
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK--LDSGVIR 79
          L    L V+++ + IL+ +S  V PGE+ A+MGP+G GK+TL   LAGR    +  G + 
Sbjct: 21 LSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE 80

Query: 80 LNKERL 85
             + L
Sbjct: 81 FKGKDL 86

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 59.9 bits (146), Expect = 7e-12
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 14/81 (17%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGV-IR-LNK 82
           +  P+L  V+  VKPG L+AV+G +G GK+TL+N +        GRV++D  + +R +  
Sbjct: 354 NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVD-ELDVRTVKL 412

Query: 83  ERLNKRWKRKICYVLQQDIFF 103
           + L    +  I  V Q+ + F
Sbjct: 413 KDL----RGHISAVPQETVLF 429

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 59.5 bits (145), Expect = 8e-12
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 16/109 (14%)

Query: 6   PSLPPEKYPLSHRPLELVFSGLSVT--LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTL 63
                 KY       E+    ++ T    ++P L  VS  +  G+ +A++G SG GK+T+
Sbjct: 326 TERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTI 385

Query: 64  LNCL-------AGRVKLDSGV-IR-LNKERLNKRWKRKICYVLQQDIFF 103
            N         +G + LD G  +R      L    +R    V Q    F
Sbjct: 386 ANLFTRFYDVDSGSICLD-GHDVRDYKLTNL----RRHFALVSQNVHLF 429

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 59.5 bits (145), Expect = 9e-12
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 14/81 (17%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGV-IR-LNK 82
            + P L++++  +  G+ +A++G SG GK+T+ + +        G + +D G  +R    
Sbjct: 354 REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMD-GHDLREYTL 412

Query: 83  ERLNKRWKRKICYVLQQDIFF 103
             L    + ++  V Q    F
Sbjct: 413 ASL----RNQVALVSQNVHLF 429

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 12/77 (15%)

Query: 35   PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKERLNK 87
            P+L+ +S  VK G+ LA++G SGCGK+T++  L       AG V LD   I+    +LN 
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIK----QLNV 1102

Query: 88   RWKRK-ICYVLQQDIFF 103
            +W R  +  V Q+ I F
Sbjct: 1103 QWLRAQLGIVSQEPILF 1119

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 14/109 (12%)

Query: 2   VSNIPSLPPEKYPLSHRPLELVFSGLSVTLDKRP---ILKDVSGVVKPGELLAVMGPSGC 58
             +I S     +   +    L F  +  +   R    ILK ++  VK G+ +A++G SGC
Sbjct: 368 KPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGC 427

Query: 59  GKTTLLNCL-------AGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD 100
           GK+T +  +        G V +D   IR     +N R+ R+I  V+ Q+
Sbjct: 428 GKSTTVQLMQRLYDPLDGMVSIDGQDIR----TINVRYLREIIGVVSQE 472

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 36  ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWK----- 90
           +LK ++  ++ GE++ V+GPSG GK+T L CL      D G I ++   L  +       
Sbjct: 39  VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98

Query: 91  -RKICYVLQQDIFFPELT 107
             ++  V Q+   FP +T
Sbjct: 99  REEVGMVFQRFNLFPHMT 116

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 33  KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRW--- 89
           K   L +V+  ++ GE   ++GPSG GKTT +  +AG     +G +  +   +       
Sbjct: 17  KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76

Query: 90  ----KRKICYVLQQDIFFPELTLRQ 110
                RKI  V Q    +P LT  +
Sbjct: 77  VPPEDRKIGMVFQTWALYPNLTAFE 101

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 7/55 (12%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIR 79
           D R  L+DVS  V PG+ LA++GPSG GK+T+L  L       +G +++D   I 
Sbjct: 65  DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDIS 119

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 57.6 bits (140), Expect = 2e-11
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 10/75 (13%)

Query: 34  RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL------AGRVKLDSGVIRLNKERLNK 87
              LK ++  +  G   A++G +G GK+T+   L       G +K+    +     + N+
Sbjct: 33  HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVN----KYNR 88

Query: 88  RWKRKICYVLQQDIF 102
              R I  ++ QD  
Sbjct: 89  NSIRSIIGIVPQDTI 103

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 57.5 bits (140), Expect = 3e-11
 Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 12/77 (15%)

Query: 35  PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKERLNK 87
            +L+ ++  + PG++ A++GP+G GK+T+   L        G+V LD   +     + + 
Sbjct: 33  QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLV----QYDH 88

Query: 88  RWKR-KICYVLQQDIFF 103
            +   ++  V Q+ + F
Sbjct: 89  HYLHTQVAAVGQEPLLF 105

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 57.1 bits (139), Expect = 4e-11
 Identities = 17/52 (32%), Positives = 30/52 (57%)

Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR 88
          L  VS  V  G++  ++GP+G GK+TL+N + G +K D G +    + +  +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK 74

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 56.4 bits (137), Expect = 7e-11
 Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 7/97 (7%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           +V   L   + K+ ILK +S  ++ GE+  ++GP+G GKTT L  ++  +K  SG++ + 
Sbjct: 16  VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 75

Query: 82  -----KERLNKRWKRKICYVLQQDIFFPELTLRQTLE 113
                +E      ++ I Y+ ++   +  +   + L 
Sbjct: 76  GKNVVEEP--HEVRKLISYLPEEAGAYRNMQGIEYLR 110

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 56.0 bits (136), Expect = 9e-11
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRK 92
          +LK VS   + G++++++G SG GK+T L C+    K   G I +N + +N    + 
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 21/66 (31%), Positives = 36/66 (54%)

Query: 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
          E+    +         L +++  +K GE +A++GPSG GK+TLL  +AG  K  SG I  
Sbjct: 3  EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62

Query: 81 NKERLN 86
          +++ + 
Sbjct: 63 DEKDVT 68

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 55.0 bits (132), Expect = 4e-10
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 7/79 (8%)

Query: 33  KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRK 92
            +P + D++        +AV+GP+G GK+TL+N L G +   SG +  ++         +
Sbjct: 685 SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE-------NCR 737

Query: 93  ICYVLQQDIFFPELTLRQT 111
           I Y+ Q      E  L +T
Sbjct: 738 IAYIKQHAFAHIESHLDKT 756

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 46.2 bits (109), Expect = 4e-07
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 21  ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
           +L     S+    + +L      +K      + GP+GCGK+TL+  +A            
Sbjct: 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG---QVDGFPT 491

Query: 81  NKERLNKRWKRKICYVLQQDIFFPE 105
            +E        +  YV         
Sbjct: 492 QEE-------CRTVYVEHDIDGTHS 509

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 54.5 bits (132), Expect = 4e-10
 Identities = 19/66 (28%), Positives = 34/66 (51%)

Query: 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
           +    +     +   ++++S  VK GE + ++GPSGCGKTT L  +AG  +   G I +
Sbjct: 3  GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62

Query: 81 NKERLN 86
            + + 
Sbjct: 63 GDKLVA 68

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 54.5 bits (132), Expect = 5e-10
 Identities = 27/66 (40%), Positives = 34/66 (51%)

Query: 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
           +    L     K   +  VS  VK GE +A++GPSGCGKTT L  LAG  K  SG I  
Sbjct: 3  SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF 62

Query: 81 NKERLN 86
          +   +N
Sbjct: 63 DDVLVN 68

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 54.1 bits (131), Expect = 6e-10
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 10/80 (12%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----- 86
           D    LK ++  +K GE+ A++G +G GK+TL     G +K  SG I  + + ++     
Sbjct: 19  DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKG 78

Query: 87  -KRWKRKICYVLQQDIFFPE 105
             + +  I  V Q     P+
Sbjct: 79  IMKLRESIGIVFQ----DPD 94

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 53.8 bits (130), Expect = 8e-10
 Identities = 20/66 (30%), Positives = 31/66 (46%)

Query: 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
          E+    L+        +  ++  +K GE L ++GPSGCGKTT L  +AG  +   G I  
Sbjct: 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 70

Query: 81 NKERLN 86
              + 
Sbjct: 71 GDRDVT 76

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 30  TLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRW 89
           T  ++  L++VS V+  GE L V G +G GK+TLL  +AG ++  SG +  + ER     
Sbjct: 16  TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE 75

Query: 90  KR-KICYVLQQDIFFPE 105
            R  I    Q    +PE
Sbjct: 76  IRRNIGIAFQ----YPE 88

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 6e-09
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 14/86 (16%)

Query: 3   SNIPSLPPEKYPLSHRPLE---LVFSGLSVTLDKRP----ILKDVSGVVKPGELLAVMGP 55
              PS+    Y      L     VF+  +V+   R      L+     ++P + + + G 
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS---RLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 56  SGCGKTTLLNCLAGRVKLDSGVIRLN 81
            G GKT     +A  V L   V    
Sbjct: 159 LGSGKT----WVALDVCLSYKVQCKM 180

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 7/66 (10%)

Query: 28 SVTLD---KR----PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
          SV L    K      + KD++  +  GE +  +GPSGCGK+TLL  +AG   + SG + +
Sbjct: 3  SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62

Query: 81 NKERLN 86
           ++R+N
Sbjct: 63 GEKRMN 68

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 11/118 (9%)

Query: 1   VVSNIPSLPPEKYPLSHRPLELVFSGLSV--TLDKRPILKDVSGVVKPGELLAVMGPSGC 58
           ++ N      + +P      ++    L+   T     IL+++S  + PG+ + ++G +G 
Sbjct: 2   LIENSHVKKDDIWPSGG---QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGS 58

Query: 59  GKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYVLQQDIFFPELTLRQTL 112
           GK+TLL+     +    G I+++    +     +W++    + Q+   F   T R+ L
Sbjct: 59  GKSTLLSAFLRLLNT-EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIF-SGTFRKNL 114

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 13/88 (14%)

Query: 24  FSGLSVT--LDKRPI--LKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVK 72
            S ++       R I  L +VS  V  G++  V+G SG GK+TL+ C+        G V 
Sbjct: 27  LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL 86

Query: 73  LDSGVI-RLNKERLNKRWKRKICYVLQQ 99
           +D   +  L++  L K  +R+I  + Q 
Sbjct: 87  VDGQELTTLSESELTKA-RRQIGMIFQH 113

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Length = 175

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 7/26 (26%), Positives = 14/26 (53%)

Query: 45 KPGELLAVMGPSGCGKTTLLNCLAGR 70
              +  +MG SG GK+ + + +A +
Sbjct: 6  HDHHIYVLMGVSGSGKSAVASEVAHQ 31

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Length = 202

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 45 KPGELLAVMGPSGCGKTTLLNCLAGR 70
          +    + VMG SG GK+++   +A  
Sbjct: 16 RFPGSIVVMGVSGSGKSSVGEAIAEA 41

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Length = 200

 Score = 37.4 bits (86), Expect = 3e-04
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 45 KPGELLAVMGPSGCGKTTLLNCLAGR 70
          +P   + VMG SG GKTT+ + +A  
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 36.4 bits (84), Expect = 7e-04
 Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 3/34 (8%)

Query: 49 LLAVMGPSGCGKTTLLNCLAGR---VKLDSGVIR 79
          L+ V G    GKTTL   LA       L     +
Sbjct: 7  LIIVTGHPATGKTTLSQALATGLRLPLLSKDAFK 40

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A* Length = 173

 Score = 36.2 bits (84), Expect = 8e-04
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 49 LLAVMGPSGCGKTTLLNCLAGR 70
          L+ + GP  C K+T+   L+  
Sbjct: 3  LIILEGPDCCFKSTVAAKLSKE 24

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.97
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.97
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.97
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.97
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.97
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.97
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.97
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.97
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.97
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.97
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.97
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.97
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.97
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.97
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.97
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.97
1g6h_A	257	High-affinity branched-chain amino acid transport	99.97
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.97
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.97
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.96
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.96
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.96
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.96
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.96
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.96
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.96
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.96
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.95
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.95
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.95
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.95
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.95
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.95
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.94
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.94
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.94
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.94
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.94
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.94
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.94
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.94
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.94
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.93
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.93
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.92
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.91
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.9
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.83
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.83
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.83
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.81
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.81
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.72
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.72
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.72
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.72
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.69
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.68
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.67
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.67
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.67
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.67
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.66
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.65
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.65
2og2_A	359	Putative signal recognition particle receptor; nuc	99.64
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.64
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.63
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.63
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.63
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.61
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.6
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.6
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.59
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.58
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.57
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.56
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.55
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.55
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.55
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.54
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.54
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.52
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.52
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.51
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.49
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.48
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.47
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.47
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.47
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.47
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	99.46
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.45
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.42
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.4
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.4
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.4
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.39
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.38
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.38
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.37
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.36
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.33
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.31
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	99.31
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.3
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.29
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.28
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.26
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.26
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.24
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.23
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.22
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.21
3kta_A	182	Chromosome segregation protein SMC; structural mai	99.19
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.19
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.17
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.17
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.17
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.16
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.16
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.14
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.13
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.13
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.12
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.12
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	99.1
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.1
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.09
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.09
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.09
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.04
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.98
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.98
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.96
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.95
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.95
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.93
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.92
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.88
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.88
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.88
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.87
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.87
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	98.87
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.86
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.86
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.85
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.84
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.82
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.79
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.78
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.77
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.76
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.76
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.75
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.74
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	98.74
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.73
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	98.73
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.72
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.72
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.7
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.7
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.68
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.67
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.66
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.65
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.64
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.61
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.6
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.59
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.58
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.57
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.52
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.51
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.49
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.49
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.49
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.47
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.45
3ice_A	422	Transcription termination factor RHO; transcriptio	98.45
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.42
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.42
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.4
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.35
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	98.33
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.32
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.31
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	98.31
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	98.29
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	98.29
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.29
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.28
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.27
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.27
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.26
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.26
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.25
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.23
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.2
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.2
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.17
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.15
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.14
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.1
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	98.09
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.09
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.07
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	98.06
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.04
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	98.04
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.03
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	98.0
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.98
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.98
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.96
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.95
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.92
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.92
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.9
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.9
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.9
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.9
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.89
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.89
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.88
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.87
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.85
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.84
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.84
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.83
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.82
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.82
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.8
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.79
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.78
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.77
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.77
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.77
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.76
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.76
1via_A	175	Shikimate kinase; structural genomics, transferase	97.75
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.75
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.74
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.73
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.73
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.71
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.7
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.7
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.69
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.69
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.65
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.65
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.65
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.63
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.62
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.62
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.62
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	97.61
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.6
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.59
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.59
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.58
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.57
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.56
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.56
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.56
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.55
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.54
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.54
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.54
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.54
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.54
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.53
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.53
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.53
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.52
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.52
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.52
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.52
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.51
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.51
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.51
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.5
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.5
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.5
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.49
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.49
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.49
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.49
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.48
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.48
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.48
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.48
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.47
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.47
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.47
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.46
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.45
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.45
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.45
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.45
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.45
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.45
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.44
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.44
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.44
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.44
3bos_A	242	Putative DNA replication factor; P-loop containing	97.43
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.43
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.42
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.42
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.42
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.42
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.42
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	97.42
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.41
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	97.41
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	97.41
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.4
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.4
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.4
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.4
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.4
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.39
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.39
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	97.38
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.37
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.37
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	97.37
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	97.36
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.36
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.36
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	97.35
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	97.35
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	97.35
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.34
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	97.33
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.33
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	97.33
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	97.33
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.32
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.32
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.31
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.31
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.31
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.31
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	97.3
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.3
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	97.3
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.29
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.29
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.29
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.29
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	97.28
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	97.28
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.28
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	97.27
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.27
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	97.27
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	97.27
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.27
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	97.26
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.26
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.26
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	97.26
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.26
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	97.25
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	97.25
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	97.24
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.24
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.24
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.23
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.23
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.23
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.23
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.23
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.23
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	97.22
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.22
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	97.22
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	97.22
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	97.21
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	97.21
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	97.21
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.21
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.2
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.2
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	97.2
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	97.2
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	97.2
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	97.2
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	97.2
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.2
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	97.19
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.19
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	97.19
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.18
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	97.18
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	97.18
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.17
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.17
3llu_A	196	RAS-related GTP-binding protein C; structural geno	97.17
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.16
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.15
2fh5_B	214	SR-beta, signal recognition particle receptor beta	97.15
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.15
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	97.15
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	97.15
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.15
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.15
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	97.13
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	97.13
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	97.13
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.12
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.12
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.12
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	97.12
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	97.11
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	97.11
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.1
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.1
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	97.1
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.09
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	97.09
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	97.09
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.08
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.08
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.07
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	97.07
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	97.06
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.05
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	97.02
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.01
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	96.99
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.99
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.99
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.97
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.96
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.95
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	96.94
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.93
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.92
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.91
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.88
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.86
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.86
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.85
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.84
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.82
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.8
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	96.8
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	96.79
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.79
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.78
1wxq_A	397	GTP-binding protein; structural genomics, riken st	96.76
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.76
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	96.76
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.76
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.75
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.75
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.71
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.7
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.72
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	96.69
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.67
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.67
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.66
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.66
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	96.65
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	96.64
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.64
2qgz_A	308	Helicase loader, putative primosome component; str	96.63
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	96.63
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.62
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.62
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.62
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.61
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	96.6
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.59
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	96.59
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.57
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.57
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	96.55
3pvs_A	447	Replication-associated recombination protein A; ma	96.55
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.55
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	96.54
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.53
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	96.52
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.52
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.49
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	96.49
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	96.47
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.46
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.46
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	96.45
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	96.44
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	96.44

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.97  E-value=6.4e-31  Score=202.96  Aligned_cols=96  Identities=26%  Similarity=0.529  Sum_probs=90.3

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEee
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQ   98 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q   98 (121)
                      +|+++|++++|++..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..  ..++.++||||
T Consensus         3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ   82 (381)
T 3rlf_A            3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ   82 (381)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence            4899999999999999999999999999999999999999999999999999999999999999863  34577999999


Q ss_pred             CCCCCCCCCHHHHHhhcc
Q psy16345         99 QDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.+||++||+||+.|+.
T Consensus        83 ~~~l~p~ltV~eni~~~~  100 (381)
T 3rlf_A           83 SYALYPHLSVAENMSFGL  100 (381)
T ss_dssp             TCCCCTTSCHHHHHTHHH
T ss_pred             CCcCCCCCCHHHHHHHHH
Confidence            999999999999999875

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.97  E-value=4.9e-31  Score=202.30  Aligned_cols=97  Identities=38%  Similarity=0.719  Sum_probs=90.3

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC----C--hhhcccEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL----N--KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~----~--~~~~~~i~   94 (121)
                      +|+++|++++|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++    .  ...++.++
T Consensus         4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig   83 (359)
T 3fvq_A            4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG   83 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence            58999999999999999999999999999999999999999999999999999999999999987    2  13467899


Q ss_pred             EEeeCCCCCCCCCHHHHHhhccc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      ||||++.+||++||+||+.|+..
T Consensus        84 ~vfQ~~~l~p~ltV~eni~~~l~  106 (359)
T 3fvq_A           84 YLVQEGVLFPHLTVYRNIAYGLG  106 (359)
T ss_dssp             EECTTCCCCTTSCHHHHHHTTST
T ss_pred             EEeCCCcCCCCCCHHHHHHHHHH
Confidence            99999999999999999999763

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.97  E-value=1.5e-30  Score=191.94  Aligned_cols=95  Identities=24%  Similarity=0.428  Sum_probs=88.1

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC--------------
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--------------   86 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~--------------   86 (121)
                      +|+++|++++|+++++|+++||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|+++.              
T Consensus         6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~   85 (262)
T 1b0u_A            6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK   85 (262)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred             eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccCh
Confidence            499999999999889999999999999999999999999999999999999999999999999874              


Q ss_pred             ---hhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         87 ---KRWKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        87 ---~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                         ..+++.++||+|++.+++.+||+||+.++
T Consensus        86 ~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~  117 (262)
T 1b0u_A           86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA  117 (262)
T ss_dssp             HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHH
T ss_pred             hhHHHHhcceEEEecCcccCCCCcHHHHHHhh
Confidence               12456799999999999999999999885

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.97  E-value=3.6e-30  Score=187.66  Aligned_cols=96  Identities=28%  Similarity=0.417  Sum_probs=88.7

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h-hcccEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R-WKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~-~~~~i~~   95 (121)
                      +++++|++++|+++++|+++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|+++..    . .++.++|
T Consensus         6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   85 (240)
T 1ji0_A            6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIAL   85 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEE
T ss_pred             eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEE
Confidence            5999999999998899999999999999999999999999999999999999999999999999852    2 2456999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |+|++.+++.+|++||+.++.
T Consensus        86 v~q~~~l~~~ltv~enl~~~~  106 (240)
T 1ji0_A           86 VPEGRRIFPELTVYENLMMGA  106 (240)
T ss_dssp             ECSSCCCCTTSBHHHHHHGGG
T ss_pred             EecCCccCCCCcHHHHHHHhh
Confidence            999999999999999999864

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.97  E-value=2.6e-30  Score=186.77  Aligned_cols=96  Identities=30%  Similarity=0.408  Sum_probs=88.1

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hh-ccc
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RW-KRK   92 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~-~~~   92 (121)
                      +++++|++++|+++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++..       .+ ++.
T Consensus         4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~   83 (224)
T 2pcj_A            4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRK   83 (224)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHH
T ss_pred             EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCc
Confidence            5999999999998899999999999999999999999999999999999999999999999998742       12 267


Q ss_pred             EEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         93 ICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        93 i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++||+|++.+++.+||+||+.++.
T Consensus        84 i~~v~q~~~l~~~~tv~e~l~~~~  107 (224)
T 2pcj_A           84 LGFVFQFHYLIPELTALENVIVPM  107 (224)
T ss_dssp             EEEECSSCCCCTTSCHHHHHHHHH
T ss_pred             EEEEecCcccCCCCCHHHHHHhHH
Confidence            999999999999999999998754

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.97  E-value=3.7e-30  Score=197.46  Aligned_cols=96  Identities=33%  Similarity=0.479  Sum_probs=89.9

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEee
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQ   98 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q   98 (121)
                      +++++|++++|+++++|+++||++++|++++|+||||||||||||+|+|+++|++|+|.++|+++..  ..++.++||||
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q   82 (359)
T 2yyz_A            3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ   82 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred             EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence            4899999999998899999999999999999999999999999999999999999999999999853  34578999999


Q ss_pred             CCCCCCCCCHHHHHhhcc
Q psy16345         99 QDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.+|+++||+||+.|+.
T Consensus        83 ~~~l~~~ltv~eni~~~~  100 (359)
T 2yyz_A           83 NYALYPHMTVFENIAFPL  100 (359)
T ss_dssp             SCCCCTTSCHHHHHHGGG
T ss_pred             CcccCCCCCHHHHHHHHH
Confidence            999999999999999975

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.97  E-value=2.3e-30  Score=191.33  Aligned_cols=95  Identities=26%  Similarity=0.497  Sum_probs=88.3

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC------hhhcccEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN------KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~------~~~~~~i~   94 (121)
                      +|+++|++++|+++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++.      ..+++.++
T Consensus        24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~  103 (263)
T 2olj_A           24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG  103 (263)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred             eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE
Confidence            599999999999889999999999999999999999999999999999999999999999999873      13456799


Q ss_pred             EEeeCCCCCCCCCHHHHHhhc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      ||+|++.+++.+||+||+.++
T Consensus       104 ~v~Q~~~l~~~~tv~e~l~~~  124 (263)
T 2olj_A          104 MVFQRFNLFPHMTVLNNITLA  124 (263)
T ss_dssp             EECSSCCCCTTSCHHHHHHHH
T ss_pred             EEeCCCcCCCCCCHHHHHHHH
Confidence            999999999999999999885

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.97  E-value=3.9e-30  Score=185.11  Aligned_cols=95  Identities=28%  Similarity=0.436  Sum_probs=88.7

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ   99 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~   99 (121)
                      .+|+++|++++|++ ++|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.++|.++. .+++.++||+|+
T Consensus         9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-~~~~~i~~v~q~   86 (214)
T 1sgw_A            9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-KVKGKIFFLPEE   86 (214)
T ss_dssp             CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-GGGGGEEEECSS
T ss_pred             ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-hhcCcEEEEeCC
Confidence            36999999999988 9999999999999999999999999999999999999999999999999875 456789999999


Q ss_pred             CCCCCCCCHHHHHhhcc
Q psy16345        100 DIFFPELTLRQTLEVSI  116 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~~  116 (121)
                      +.+++.+|++||+.++.
T Consensus        87 ~~~~~~~tv~enl~~~~  103 (214)
T 1sgw_A           87 IIVPRKISVEDYLKAVA  103 (214)
T ss_dssp             CCCCTTSBHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHHH
Confidence            99999999999998853

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.97  E-value=5.1e-30  Score=196.47  Aligned_cols=98  Identities=26%  Similarity=0.481  Sum_probs=91.0

Q ss_pred             ccEEEEeeeEEEc-CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEE
Q psy16345         19 PLELVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICY   95 (121)
Q Consensus        19 ~~~i~~~~l~~~~-~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~   95 (121)
                      ..+|+++|++++| +++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..  ..++.++|
T Consensus        12 ~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~   91 (355)
T 1z47_A           12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGL   91 (355)
T ss_dssp             CEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEE
T ss_pred             CceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEE
Confidence            4569999999999 88889999999999999999999999999999999999999999999999999853  44678999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |||++.+|+++||+||+.|+.
T Consensus        92 v~Q~~~l~~~ltv~eni~~~l  112 (355)
T 1z47_A           92 VFQNYALFQHMTVYDNVSFGL  112 (355)
T ss_dssp             ECGGGCCCTTSCHHHHHHHHH
T ss_pred             EecCcccCCCCCHHHHHHHHH
Confidence            999999999999999999865

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.97  E-value=2.8e-30  Score=187.80  Aligned_cols=96  Identities=30%  Similarity=0.452  Sum_probs=86.1

Q ss_pred             EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h----
Q psy16345         21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R----   88 (121)
Q Consensus        21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~----   88 (121)
                      +|+++|++++|++    .++|+++||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|+++..    .    
T Consensus         1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   80 (235)
T 3tif_A            1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI   80 (235)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence            3789999999963    469999999999999999999999999999999999999999999999998852    1    


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      .++.++||||++.+++.+||+||+.++.
T Consensus        81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~  108 (235)
T 3tif_A           81 RRDKIGFVFQQFNLIPLLTALENVELPL  108 (235)
T ss_dssp             HHHHEEEECTTCCCCTTSCHHHHHHHHH
T ss_pred             hhccEEEEecCCccCCCCcHHHHHHHHH
Confidence            2346999999999999999999998753

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.97  E-value=5.2e-30  Score=188.73  Aligned_cols=97  Identities=24%  Similarity=0.398  Sum_probs=89.6

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYV   96 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v   96 (121)
                      .+|+++|++++|+++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++..   .+++.++||
T Consensus        14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v   93 (256)
T 1vpl_A           14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYL   93 (256)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEE
T ss_pred             CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEE
Confidence            35999999999998899999999999999999999999999999999999999999999999998852   456789999


Q ss_pred             eeCCCCCCCCCHHHHHhhcc
Q psy16345         97 LQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +|++.+++.+||+||+.+..
T Consensus        94 ~q~~~l~~~ltv~enl~~~~  113 (256)
T 1vpl_A           94 PEEAGAYRNMQGIEYLRFVA  113 (256)
T ss_dssp             CTTCCCCTTSBHHHHHHHHH
T ss_pred             cCCCCCCCCCcHHHHHHHHH
Confidence            99999999999999998753

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.97  E-value=5.8e-30  Score=196.57  Aligned_cols=96  Identities=27%  Similarity=0.502  Sum_probs=89.6

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEee
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQ   98 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q   98 (121)
                      +|+++|++++|+++++|+++||++++|++++|+||||||||||||+|+|+++|++|+|.++|+++..  ..++.++||||
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q   82 (362)
T 2it1_A            3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ   82 (362)
T ss_dssp             CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence            4899999999988889999999999999999999999999999999999999999999999999853  34578999999


Q ss_pred             CCCCCCCCCHHHHHhhcc
Q psy16345         99 QDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.+|+++||+||+.|+.
T Consensus        83 ~~~l~~~ltv~eni~~~~  100 (362)
T 2it1_A           83 NWALYPHMTVYKNIAFPL  100 (362)
T ss_dssp             TCCCCTTSCHHHHHHHHH
T ss_pred             CcccCCCCCHHHHHHHHH
Confidence            999999999999999864

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.97  E-value=7.5e-30  Score=188.72  Aligned_cols=98  Identities=27%  Similarity=0.390  Sum_probs=90.6

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY   95 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~   95 (121)
                      .+++++|+++.|+++++|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..    .+++.++|
T Consensus        10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~   89 (266)
T 4g1u_C           10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV   89 (266)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred             ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence            36999999999999999999999999999999999999999999999999999999999999999862    45667999


Q ss_pred             EeeCCCCCCCCCHHHHHhhccc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      ++|++.+++.+||+||+.++..
T Consensus        90 v~q~~~~~~~~tv~e~l~~~~~  111 (266)
T 4g1u_C           90 MRQYSELAFPFSVSEVIQMGRA  111 (266)
T ss_dssp             ECSCCCCCSCCBHHHHHHGGGT
T ss_pred             EecCCccCCCCCHHHHHHhhhh
Confidence            9999998888999999998753

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.97  E-value=5.9e-30  Score=197.15  Aligned_cols=96  Identities=27%  Similarity=0.489  Sum_probs=84.1

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEee
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQ   98 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q   98 (121)
                      +|+++|++++|+++++|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.++|+++..  ..++.++||||
T Consensus        11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q   90 (372)
T 1v43_A           11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ   90 (372)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred             eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence            4999999999998889999999999999999999999999999999999999999999999999853  34568999999


Q ss_pred             CCCCCCCCCHHHHHhhcc
Q psy16345         99 QDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.+|+++||+||+.|+.
T Consensus        91 ~~~l~~~ltv~eni~~~~  108 (372)
T 1v43_A           91 SYAVWPHMTVYENIAFPL  108 (372)
T ss_dssp             ------CCCHHHHHHTTC
T ss_pred             CcccCCCCCHHHHHHHHH
Confidence            999999999999999975

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.97  E-value=5.1e-30  Score=197.04  Aligned_cols=97  Identities=22%  Similarity=0.384  Sum_probs=88.7

Q ss_pred             cEEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------h
Q psy16345         20 LELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------R   88 (121)
Q Consensus        20 ~~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~   88 (121)
                      .+|+++|+++.|+.    ..+|++|||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..       .
T Consensus        23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~  102 (366)
T 3tui_C           23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK  102 (366)
T ss_dssp             CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred             ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence            36999999999953    469999999999999999999999999999999999999999999999999852       2


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +++.++||||++.+++.+||+||+.++.
T Consensus       103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~  130 (366)
T 3tui_C          103 ARRQIGMIFQHFNLLSSRTVFGNVALPL  130 (366)
T ss_dssp             HHTTEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred             HhCcEEEEeCCCccCCCCCHHHHHHHHH
Confidence            4678999999999999999999999864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.97  E-value=7.5e-30  Score=196.55  Aligned_cols=96  Identities=26%  Similarity=0.471  Sum_probs=89.0

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hhccc
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RWKRK   92 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~~~~   92 (121)
                      +|+++|++++|+++++|+++||++++|++++|+||||||||||||+|+|+++|++|+|.++|+++..        ..++.
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~   82 (372)
T 1g29_1            3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD   82 (372)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence            5899999999998899999999999999999999999999999999999999999999999988632        23567


Q ss_pred             EEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         93 ICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        93 i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ++||||++.+|+++||+||+.|+.
T Consensus        83 ig~v~Q~~~l~~~ltv~eni~~~~  106 (372)
T 1g29_1           83 IAMVFQSYALYPHMTVYDNIAFPL  106 (372)
T ss_dssp             EEEECSCCCCCTTSCHHHHHHHHH
T ss_pred             EEEEeCCCccCCCCCHHHHHHHHH
Confidence            999999999999999999999875

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.97  E-value=2.7e-30  Score=190.02  Aligned_cols=96  Identities=24%  Similarity=0.375  Sum_probs=88.9

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~   95 (121)
                      +++++|++++|+++++|+++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|+++..     .+++.++|
T Consensus         7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   86 (257)
T 1g6h_A            7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR   86 (257)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred             EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence            6999999999998899999999999999999999999999999999999999999999999998852     23567999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |+|++.+++.+||+||+.++.
T Consensus        87 v~q~~~l~~~~tv~enl~~~~  107 (257)
T 1g6h_A           87 TFQTPQPLKEMTVLENLLIGE  107 (257)
T ss_dssp             CCCCCGGGGGSBHHHHHHGGG
T ss_pred             EccCCccCCCCcHHHHHHHHH
Confidence            999999999999999999864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.97  E-value=4.9e-30  Score=196.40  Aligned_cols=97  Identities=26%  Similarity=0.439  Sum_probs=89.5

Q ss_pred             EEEEeeeEEEcCCcc--eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhcc
Q psy16345         21 ELVFSGLSVTLDKRP--ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKR   91 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~--~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~   91 (121)
                      +|+++|++++|++++  +|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.++|+++..       ..++
T Consensus         3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r   82 (353)
T 1oxx_K            3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR   82 (353)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred             EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence            489999999998888  9999999999999999999999999999999999999999999999988632       3467


Q ss_pred             cEEEEeeCCCCCCCCCHHHHHhhccc
Q psy16345         92 KICYVLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        92 ~i~~v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      .++||||++.+|+++||+||+.|+..
T Consensus        83 ~ig~v~Q~~~l~~~ltv~eni~~~~~  108 (353)
T 1oxx_K           83 KIGMVFQTWALYPNLTAFENIAFPLT  108 (353)
T ss_dssp             CEEEEETTSCCCTTSCHHHHHHGGGT
T ss_pred             CEEEEeCCCccCCCCCHHHHHHHHHH
Confidence            89999999999999999999999753

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.97  E-value=5e-30  Score=196.05  Aligned_cols=95  Identities=31%  Similarity=0.494  Sum_probs=88.5

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEee
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQ   98 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q   98 (121)
                      +++++|++++|+++ +|+++||++++|++++|+||||||||||||+|+|+++|++|+|.++|+++..  ..++.++||||
T Consensus         1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q   79 (348)
T 3d31_A            1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ   79 (348)
T ss_dssp             CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred             CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence            37899999999888 9999999999999999999999999999999999999999999999999853  34668999999


Q ss_pred             CCCCCCCCCHHHHHhhcc
Q psy16345         99 QDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.+|+++||+||+.|+.
T Consensus        80 ~~~l~~~ltv~enl~~~~   97 (348)
T 3d31_A           80 NYSLFPHMNVKKNLEFGM   97 (348)
T ss_dssp             TCCCCTTSCHHHHHHHHH
T ss_pred             CcccCCCCCHHHHHHHHH
Confidence            999999999999999875

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.96  E-value=2.4e-29  Score=189.44  Aligned_cols=96  Identities=30%  Similarity=0.523  Sum_probs=88.7

Q ss_pred             EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345         21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~   95 (121)
                      .|+++||+|+|+ ++++|+++||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.++..    .+++.++|
T Consensus        53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~  132 (306)
T 3nh6_A           53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGV  132 (306)
T ss_dssp             CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEE
T ss_pred             eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEE
Confidence            599999999995 5789999999999999999999999999999999999999999999999999862    56788999


Q ss_pred             EeeCCCCCCCCCHHHHHhhccc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      |+|++.+|+. ||+||+.++..
T Consensus       133 v~Q~~~lf~~-Tv~eNi~~~~~  153 (306)
T 3nh6_A          133 VPQDTVLFND-TIADNIRYGRV  153 (306)
T ss_dssp             ECSSCCCCSE-EHHHHHHTTST
T ss_pred             EecCCccCcc-cHHHHHHhhcc
Confidence            9999999864 99999999864

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.96  E-value=3.4e-29  Score=186.11  Aligned_cols=96  Identities=24%  Similarity=0.368  Sum_probs=85.5

Q ss_pred             EEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC--h----hhcccE
Q psy16345         21 ELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--K----RWKRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~--~----~~~~~i   93 (121)
                      +|+++|++++|++ ..+|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.  .    .+++.+
T Consensus         7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~i   86 (275)
T 3gfo_A            7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESI   86 (275)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSE
T ss_pred             EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcE
Confidence            6999999999975 45999999999999999999999999999999999999999999999999983  1    356789


Q ss_pred             EEEeeCCC-CCCCCCHHHHHhhcc
Q psy16345         94 CYVLQQDI-FFPELTLRQTLEVSI  116 (121)
Q Consensus        94 ~~v~Q~~~-l~~~ltv~e~l~~~~  116 (121)
                      +||||++. .++.+||+||+.++.
T Consensus        87 g~v~Q~~~~~~~~~tv~e~l~~~~  110 (275)
T 3gfo_A           87 GIVFQDPDNQLFSASVYQDVSFGA  110 (275)
T ss_dssp             EEECSSGGGTCCSSBHHHHHHHHH
T ss_pred             EEEEcCcccccccCcHHHHHHHHH
Confidence            99999873 334689999999865

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.96  E-value=3.7e-29  Score=183.17  Aligned_cols=95  Identities=21%  Similarity=0.427  Sum_probs=86.5

Q ss_pred             EEEEeeeEEEc--CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345         21 ELVFSGLSVTL--DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~--~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~   94 (121)
                      .|+++|++++|  +++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++..    .+++.++
T Consensus         7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~   86 (247)
T 2ff7_A            7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG   86 (247)
T ss_dssp             EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred             ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence            48999999999  46789999999999999999999999999999999999999999999999999852    3567899


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ||+|++.+++ .|++||+.++.
T Consensus        87 ~v~Q~~~l~~-~tv~enl~~~~  107 (247)
T 2ff7_A           87 VVLQDNVLLN-RSIIDNISLAN  107 (247)
T ss_dssp             EECSSCCCTT-SBHHHHHTTTC
T ss_pred             EEeCCCcccc-ccHHHHHhccC
Confidence            9999998886 59999999864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.96  E-value=2.5e-29  Score=187.10  Aligned_cols=97  Identities=21%  Similarity=0.240  Sum_probs=86.6

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC------hhhcccE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN------KRWKRKI   93 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~------~~~~~~i   93 (121)
                      ++++++|++++|+++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++.      ..+++.+
T Consensus        20 ~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i   99 (279)
T 2ihy_A           20 MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHI   99 (279)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTE
T ss_pred             ceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcE
Confidence            4699999999999889999999999999999999999999999999999999999999999998774      2456789


Q ss_pred             EEEeeCCCCC--CCCCHHHHHhhcc
Q psy16345         94 CYVLQQDIFF--PELTLRQTLEVSI  116 (121)
Q Consensus        94 ~~v~Q~~~l~--~~ltv~e~l~~~~  116 (121)
                      +||+|++.++  +.+||+||+.++.
T Consensus       100 ~~v~Q~~~~~~~~~ltv~enl~~~~  124 (279)
T 2ihy_A          100 GFVSHSLLEKFQEGERVIDVVISGA  124 (279)
T ss_dssp             EEECHHHHTTSCTTSBHHHHHHTTC
T ss_pred             EEEEcCcccccCCCCCHHHHHHhhh
Confidence            9999997543  3569999998853

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.96  E-value=5.5e-29  Score=184.45  Aligned_cols=95  Identities=22%  Similarity=0.401  Sum_probs=87.1

Q ss_pred             EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccE
Q psy16345         21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i   93 (121)
                      +|+++|++++|++   +++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++..    .+++++
T Consensus        16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i   95 (271)
T 2ixe_A           16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQV   95 (271)
T ss_dssp             CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred             eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccE
Confidence            5999999999976   789999999999999999999999999999999999999999999999998742    356679


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +||+|++.+++ .||+||+.++.
T Consensus        96 ~~v~Q~~~l~~-~tv~enl~~~~  117 (271)
T 2ixe_A           96 AAVGQEPLLFG-RSFRENIAYGL  117 (271)
T ss_dssp             EEECSSCCCCS-SBHHHHHHTTC
T ss_pred             EEEecCCcccc-ccHHHHHhhhc
Confidence            99999998887 49999999865

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.96  E-value=2.1e-29  Score=183.81  Aligned_cols=93  Identities=27%  Similarity=0.512  Sum_probs=85.8

Q ss_pred             EEEeeeEEEc-CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEE
Q psy16345         22 LVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYV   96 (121)
Q Consensus        22 i~~~~l~~~~-~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v   96 (121)
                      ++++|++++| +++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++..    .++++++||
T Consensus         2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v   81 (243)
T 1mv5_A            2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV   81 (243)
T ss_dssp             EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred             EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence            7899999999 66789999999999999999999999999999999999999999999999998752    356789999


Q ss_pred             eeCCCCCCCCCHHHHHhhc
Q psy16345         97 LQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +|++.+++. |++||+.++
T Consensus        82 ~q~~~l~~~-tv~enl~~~   99 (243)
T 1mv5_A           82 SQDSAIMAG-TIRENLTYG   99 (243)
T ss_dssp             CCSSCCCCE-EHHHHTTSC
T ss_pred             cCCCccccc-cHHHHHhhh
Confidence            999988874 999999986

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.96  E-value=1.3e-28  Score=181.94  Aligned_cols=96  Identities=27%  Similarity=0.366  Sum_probs=86.4

Q ss_pred             EEEEeeeEEEcC--C---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-hhcccEE
Q psy16345         21 ELVFSGLSVTLD--K---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-RWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~--~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-~~~~~i~   94 (121)
                      +++++|++++|+  +   +++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. .+++.++
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~   81 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG   81 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence            489999999997  4   579999999999999999999999999999999999999999999999998864 4567899


Q ss_pred             EEeeCC-CCCCCCCHHHHHhhcc
Q psy16345         95 YVLQQD-IFFPELTLRQTLEVSI  116 (121)
Q Consensus        95 ~v~Q~~-~l~~~ltv~e~l~~~~  116 (121)
                      ||+|++ .+++.+|++||+.++.
T Consensus        82 ~v~q~~~~~~~~~tv~enl~~~~  104 (266)
T 2yz2_A           82 IAFQYPEDQFFAERVFDEVAFAV  104 (266)
T ss_dssp             EECSSGGGGCCCSSHHHHHHHTT
T ss_pred             EEeccchhhcCCCcHHHHHHHHH
Confidence            999996 4566789999999864

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.96  E-value=9.8e-29  Score=181.02  Aligned_cols=96  Identities=32%  Similarity=0.500  Sum_probs=86.2

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC--CCCCccEEEECCEeCCh----h-hcccE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR--VKLDSGVIRLNKERLNK----R-WKRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl--~~~~~G~i~~~g~~~~~----~-~~~~i   93 (121)
                      +++++|++++|+++++|+++||+|++|++++|+||||||||||+|+|+|+  ++|++|+|.++|+++..    . .+..+
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i   82 (250)
T 2d2e_A            3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL   82 (250)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred             eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence            58999999999988999999999999999999999999999999999998  78999999999999752    2 24468


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +|++|++.+++.+|++||+.++.
T Consensus        83 ~~v~q~~~~~~~~tv~e~l~~~~  105 (250)
T 2d2e_A           83 FLAFQYPVEVPGVTIANFLRLAL  105 (250)
T ss_dssp             CCCCCCCC-CCSCBHHHHHHHHH
T ss_pred             EEeccCCccccCCCHHHHHHHHH
Confidence            99999999999999999998753

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.95  E-value=1.9e-28  Score=178.85  Aligned_cols=92  Identities=26%  Similarity=0.435  Sum_probs=84.7

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ   99 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~   99 (121)
                      ++++|++++|++  +|+++||++++ ++++|+||||||||||+|+|+|+++|++|+|.++|+++..  ..+++++||+|+
T Consensus         2 l~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~   78 (240)
T 2onk_A            2 FLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD   78 (240)
T ss_dssp             CEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred             EEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCC
Confidence            789999999975  59999999999 9999999999999999999999999999999999998853  345679999999


Q ss_pred             CCCCCCCCHHHHHhhcc
Q psy16345        100 DIFFPELTLRQTLEVSI  116 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~~  116 (121)
                      +.+++.+|++||+.++.
T Consensus        79 ~~l~~~ltv~enl~~~~   95 (240)
T 2onk_A           79 YALFPHLSVYRNIAYGL   95 (240)
T ss_dssp             CCCCTTSCHHHHHHTTC
T ss_pred             CccCCCCcHHHHHHHHH
Confidence            99999999999999864

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.95  E-value=3.7e-28  Score=179.62  Aligned_cols=95  Identities=31%  Similarity=0.494  Sum_probs=85.7

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC--CCCCccEEEECCEeCCh----hh-cccE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR--VKLDSGVIRLNKERLNK----RW-KRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl--~~~~~G~i~~~g~~~~~----~~-~~~i   93 (121)
                      +|+++|++++|+++++|+++||+|++|++++|+||||||||||+|+|+|+  ++|++|+|.++|+++..    .+ ++.+
T Consensus        20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i   99 (267)
T 2zu0_C           20 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGI   99 (267)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTE
T ss_pred             eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCE
Confidence            59999999999888999999999999999999999999999999999999  46899999999998742    22 3459


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +||+|++.+++.+|+.+|+.+.
T Consensus       100 ~~v~Q~~~l~~~~tv~e~~~~~  121 (267)
T 2zu0_C          100 FMAFQYPVEIPGVSNQFFLQTA  121 (267)
T ss_dssp             EEECSSCCCCTTCBHHHHHHHH
T ss_pred             EEEccCccccccccHHHHHHHH
Confidence            9999999999999999998764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.95  E-value=1.2e-27  Score=175.69  Aligned_cols=87  Identities=24%  Similarity=0.311  Sum_probs=81.5

Q ss_pred             EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345         21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ   99 (121)
Q Consensus        21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~   99 (121)
                      +++++|++++|+ ++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.         +++.++||+|+
T Consensus         4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~---------~~~~i~~v~q~   74 (253)
T 2nq2_C            4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE---------VYQSIGFVPQF   74 (253)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE---------ECSCEEEECSC
T ss_pred             eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---------EeccEEEEcCC
Confidence            599999999998 88899999999999999999999999999999999999999999998         24579999999


Q ss_pred             CCCCCCCCHHHHHhhcc
Q psy16345        100 DIFFPELTLRQTLEVSI  116 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~~  116 (121)
                      +.+++.+||+||+.++.
T Consensus        75 ~~~~~~~tv~enl~~~~   91 (253)
T 2nq2_C           75 FSSPFAYSVLDIVLMGR   91 (253)
T ss_dssp             CCCSSCCBHHHHHHGGG
T ss_pred             CccCCCCCHHHHHHHhh
Confidence            99988899999999864

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.95  E-value=1.2e-27  Score=173.17  Aligned_cols=86  Identities=29%  Similarity=0.557  Sum_probs=80.5

Q ss_pred             EEEEeeeEEEcC--CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345         21 ELVFSGLSVTLD--KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ   98 (121)
Q Consensus        21 ~i~~~~l~~~~~--~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q   98 (121)
                      +++++|++++|+  ++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|         +++|++|
T Consensus         6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---------~i~~v~q   76 (229)
T 2pze_A            6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------RISFCSQ   76 (229)
T ss_dssp             EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---------CEEEECS
T ss_pred             eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---------EEEEEec
Confidence            699999999995  47899999999999999999999999999999999999999999999987         5999999


Q ss_pred             CCCCCCCCCHHHHHhhcc
Q psy16345         99 QDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.+++. |++||+.++.
T Consensus        77 ~~~~~~~-tv~enl~~~~   93 (229)
T 2pze_A           77 FSWIMPG-TIKENIIFGV   93 (229)
T ss_dssp             SCCCCSB-CHHHHHHTTS
T ss_pred             CCcccCC-CHHHHhhccC
Confidence            9998886 9999999864

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.95  E-value=7.9e-28  Score=177.22  Aligned_cols=94  Identities=24%  Similarity=0.359  Sum_probs=84.9

Q ss_pred             EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccE
Q psy16345         21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i   93 (121)
                      +|+++|++++|++   +++|+++||+|++|++++|+||||||||||+|+|+|+++| +|+|.++|.++..    .+++.+
T Consensus        17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i   95 (260)
T 2ghi_A           17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSII   95 (260)
T ss_dssp             CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTE
T ss_pred             eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccE
Confidence            5999999999975   4699999999999999999999999999999999999987 8999999998742    456789


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +||+|++.+++ .|++||+.++.
T Consensus        96 ~~v~Q~~~l~~-~tv~enl~~~~  117 (260)
T 2ghi_A           96 GIVPQDTILFN-ETIKYNILYGK  117 (260)
T ss_dssp             EEECSSCCCCS-EEHHHHHHTTC
T ss_pred             EEEcCCCcccc-cCHHHHHhccC
Confidence            99999999886 59999999864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.95  E-value=1.7e-27  Score=174.70  Aligned_cols=91  Identities=26%  Similarity=0.389  Sum_probs=83.4

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICYV   96 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~v   96 (121)
                      +++++|++++    ++|+++||++++|++++|+||||||||||+|+|+|+++|+ |+|.++|+++.    ..+++.++||
T Consensus         4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v   78 (249)
T 2qi9_C            4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYL   78 (249)
T ss_dssp             EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred             EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEE
Confidence            5899999986    6999999999999999999999999999999999999999 99999999874    2456679999


Q ss_pred             eeCCCCCCCCCHHHHHhhcc
Q psy16345         97 LQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        97 ~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +|++.+++.+|++||+.++.
T Consensus        79 ~q~~~~~~~~tv~e~l~~~~   98 (249)
T 2qi9_C           79 SQQQTPPFATPVWHYLTLHQ   98 (249)
T ss_dssp             CSCCCCCTTCBHHHHHHTTC
T ss_pred             CCCCccCCCCcHHHHHHHhh
Confidence            99999998899999999863

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.94  E-value=2.2e-27  Score=183.76  Aligned_cols=94  Identities=22%  Similarity=0.475  Sum_probs=85.4

Q ss_pred             cEEEEeeeEEEc--CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccE
Q psy16345         20 LELVFSGLSVTL--DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKI   93 (121)
Q Consensus        20 ~~i~~~~l~~~~--~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i   93 (121)
                      ..|+++||+++|  +++.+|+++||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++..    .+++.+
T Consensus        18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i   96 (390)
T 3gd7_A           18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF   96 (390)
T ss_dssp             CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred             CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence            359999999999  66789999999999999999999999999999999999998 89999999998852    456789


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +||||++.+|+ +||+||+.+.
T Consensus        97 g~v~Q~~~lf~-~tv~enl~~~  117 (390)
T 3gd7_A           97 GVIPQKVFIFS-GTFRKNLDPN  117 (390)
T ss_dssp             EEESCCCCCCS-EEHHHHHCTT
T ss_pred             EEEcCCcccCc-cCHHHHhhhc
Confidence            99999999987 5999999753

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.94  E-value=2.8e-27  Score=172.15  Aligned_cols=86  Identities=26%  Similarity=0.461  Sum_probs=79.6

Q ss_pred             EEEEeeeEEEcC--CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345         21 ELVFSGLSVTLD--KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ   98 (121)
Q Consensus        21 ~i~~~~l~~~~~--~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q   98 (121)
                      +++++|++++|+  ++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|         .++||+|
T Consensus         3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---------~i~~v~Q   73 (237)
T 2cbz_A            3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---------SVAYVPQ   73 (237)
T ss_dssp             CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---------CEEEECS
T ss_pred             eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---------EEEEEcC
Confidence            489999999997  47899999999999999999999999999999999999999999999997         4999999


Q ss_pred             CCCCCCCCCHHHHHhhcc
Q psy16345         99 QDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.+ +.+|++||+.++.
T Consensus        74 ~~~~-~~~tv~enl~~~~   90 (237)
T 2cbz_A           74 QAWI-QNDSLRENILFGC   90 (237)
T ss_dssp             SCCC-CSEEHHHHHHTTS
T ss_pred             CCcC-CCcCHHHHhhCcc
Confidence            9875 4779999999864

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.94  E-value=6.5e-27  Score=188.24  Aligned_cols=96  Identities=26%  Similarity=0.400  Sum_probs=88.4

Q ss_pred             cEEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345         20 LELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI   93 (121)
Q Consensus        20 ~~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i   93 (121)
                      ..++++|++++|++  +++|+++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.    +.+++++
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i  419 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF  419 (582)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence            35999999999974  68999999999999999999999999999999999999999999999999875    2567889


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +||+|++.+|+. |++||+.++.
T Consensus       420 ~~v~Q~~~l~~~-tv~eni~~~~  441 (582)
T 3b5x_A          420 ALVSQNVHLFND-TIANNIAYAA  441 (582)
T ss_pred             EEEcCCCccccc-cHHHHHhccC
Confidence            999999999875 9999999875

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.94  E-value=6e-27  Score=188.39  Aligned_cols=97  Identities=27%  Similarity=0.474  Sum_probs=89.2

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~   94 (121)
                      .++++|++++|++  +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.+    .++++++
T Consensus       339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~  418 (578)
T 4a82_A          339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG  418 (578)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred             eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence            5999999999964  579999999999999999999999999999999999999999999999999863    5678899


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcccC
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSIAD  118 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~~~  118 (121)
                      ||+|++.+|+. |++||+.++.+.
T Consensus       419 ~v~Q~~~l~~~-tv~eni~~~~~~  441 (578)
T 4a82_A          419 LVQQDNILFSD-TVKENILLGRPT  441 (578)
T ss_dssp             EECSSCCCCSS-BHHHHHGGGCSS
T ss_pred             EEeCCCccCcc-cHHHHHhcCCCC
Confidence            99999999976 999999998654

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.94  E-value=6.8e-27  Score=188.14  Aligned_cols=95  Identities=22%  Similarity=0.419  Sum_probs=87.9

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~   94 (121)
                      .++++|++++|++  +++|+++||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++.+    .++++++
T Consensus       341 ~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~  420 (582)
T 3b60_A          341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA  420 (582)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred             cEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCe
Confidence            5999999999973  689999999999999999999999999999999999999999999999999852    4677899


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ||+|++.+|+. |++||+.++.
T Consensus       421 ~v~Q~~~l~~~-tv~eni~~~~  441 (582)
T 3b60_A          421 LVSQNVHLFND-TVANNIAYAR  441 (582)
T ss_dssp             EECSSCCCCSS-BHHHHHHTTT
T ss_pred             EEccCCcCCCC-CHHHHHhccC
Confidence            99999999875 9999999875

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.94  E-value=7.6e-27  Score=188.23  Aligned_cols=97  Identities=27%  Similarity=0.494  Sum_probs=88.9

Q ss_pred             EEEEeeeEEEcC--CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345         21 ELVFSGLSVTLD--KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~--~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~   94 (121)
                      .++++|++++|+  ++++|+++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.+    .++++++
T Consensus       341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~  420 (587)
T 3qf4_A          341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHIS  420 (587)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEE
T ss_pred             cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheE
Confidence            599999999994  4679999999999999999999999999999999999999999999999999852    5678899


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcccC
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSIAD  118 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~~~  118 (121)
                      ||+|++.+|+. |++||+.++.+.
T Consensus       421 ~v~Q~~~lf~~-tv~eni~~~~~~  443 (587)
T 3qf4_A          421 AVPQETVLFSG-TIKENLKWGRED  443 (587)
T ss_dssp             EECSSCCCCSE-EHHHHHTTTCSS
T ss_pred             EECCCCcCcCc-cHHHHHhccCCC
Confidence            99999999876 999999988653

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.94  E-value=1e-26  Score=187.77  Aligned_cols=97  Identities=34%  Similarity=0.588  Sum_probs=88.9

Q ss_pred             EEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345         21 ELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~   95 (121)
                      .++++|++++|++ +++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++.+    .++++++|
T Consensus       354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~  433 (598)
T 3qf4_B          354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGI  433 (598)
T ss_dssp             CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred             eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEE
Confidence            5999999999964 679999999999999999999999999999999999999999999999999863    56788999


Q ss_pred             EeeCCCCCCCCCHHHHHhhcccC
Q psy16345         96 VLQQDIFFPELTLRQTLEVSIAD  118 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~~~  118 (121)
                      |+|++.+|+. |++||+.++.+.
T Consensus       434 v~Q~~~lf~~-tv~eni~~~~~~  455 (598)
T 3qf4_B          434 VLQDTILFST-TVKENLKYGNPG  455 (598)
T ss_dssp             ECTTCCCCSS-BHHHHHHSSSTT
T ss_pred             EeCCCccccc-cHHHHHhcCCCC
Confidence            9999999865 999999997643

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.94  E-value=8.7e-27  Score=172.14  Aligned_cols=92  Identities=26%  Similarity=0.361  Sum_probs=82.7

Q ss_pred             EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-hhcccEE-
Q psy16345         21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-RWKRKIC-   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-~~~~~i~-   94 (121)
                      +++++|++++|++    +++|+++||+++ |++++|+||||||||||+|+|+|++ |++|+|.++|.++.. ..+++++ 
T Consensus         1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~   78 (263)
T 2pjz_A            1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST   78 (263)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred             CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence            3789999999976    789999999999 9999999999999999999999999 999999999988742 1256799 


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ||+|++.+  .+|++||+.++.
T Consensus        79 ~v~Q~~~l--~~tv~enl~~~~   98 (263)
T 2pjz_A           79 NLPEAYEI--GVTVNDIVYLYE   98 (263)
T ss_dssp             CCGGGSCT--TSBHHHHHHHHH
T ss_pred             EeCCCCcc--CCcHHHHHHHhh
Confidence            99999887  789999998754

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.93  E-value=4.2e-26  Score=196.98  Aligned_cols=96  Identities=26%  Similarity=0.463  Sum_probs=89.5

Q ss_pred             EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345         21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i   93 (121)
                      .|+++||+|+|.+   .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++.    +.+|+++
T Consensus      1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i 1155 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQI 1155 (1321)
T ss_dssp             CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTE
T ss_pred             eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhhe
Confidence            5999999999954   46999999999999999999999999999999999999999999999999997    3689999


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhccc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      +||||+|.+|.. |++||+.++.+
T Consensus      1156 ~~V~Qdp~LF~g-TIreNI~~gld 1178 (1321)
T 4f4c_A         1156 AIVSQEPTLFDC-SIAENIIYGLD 1178 (1321)
T ss_dssp             EEECSSCCCCSE-EHHHHHSSSSC
T ss_pred             EEECCCCEeeCc-cHHHHHhccCC
Confidence            999999999977 99999999863

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.93  E-value=1.5e-25  Score=193.61  Aligned_cols=99  Identities=21%  Similarity=0.410  Sum_probs=91.1

Q ss_pred             EEEEeeeEEEcC---CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345         21 ELVFSGLSVTLD---KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~---~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i   93 (121)
                      .|+++|++|+|+   ++++|+|+||+|++|+.+||+||||||||||+++|.|+++|++|+|.++|.++.    +.+|+++
T Consensus       415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i  494 (1321)
T 4f4c_A          415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV  494 (1321)
T ss_dssp             CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred             cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence            599999999995   357999999999999999999999999999999999999999999999999986    3678899


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhcccCcC
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSIADED  120 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~  120 (121)
                      +||+|++.+|.. |++||+.++.++++
T Consensus       495 ~~v~Q~~~Lf~~-TI~eNI~~g~~~~~  520 (1321)
T 4f4c_A          495 AVVSQEPALFNC-TIEENISLGKEGIT  520 (1321)
T ss_dssp             EEECSSCCCCSE-EHHHHHHTTCTTCC
T ss_pred             cccCCcceeeCC-chhHHHhhhcccch
Confidence            999999999976 99999999986543

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.92  E-value=5.1e-25  Score=189.87  Aligned_cols=97  Identities=24%  Similarity=0.429  Sum_probs=89.1

Q ss_pred             EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345         21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i   93 (121)
                      .|+++|++|+|++   .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.    +.+++++
T Consensus       387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i  466 (1284)
T 3g5u_A          387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREII  466 (1284)
T ss_dssp             CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred             eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhhe
Confidence            5999999999964   46999999999999999999999999999999999999999999999999985    2567789


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhcccC
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSIAD  118 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~~~  118 (121)
                      +||+|++.+|+. |++||+.++.++
T Consensus       467 ~~v~Q~~~l~~~-ti~eNi~~g~~~  490 (1284)
T 3g5u_A          467 GVVSQEPVLFAT-TIAENIRYGRED  490 (1284)
T ss_dssp             EEECSSCCCCSS-CHHHHHHHHCSS
T ss_pred             EEEcCCCccCCc-cHHHHHhcCCCC
Confidence            999999999976 999999998753

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.91  E-value=7.1e-25  Score=163.90  Aligned_cols=81  Identities=33%  Similarity=0.590  Sum_probs=66.9

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD  100 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~  100 (121)
                      .++++|+++.+  +++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|         +++||+|++
T Consensus        40 ~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---------~i~~v~Q~~  108 (290)
T 2bbs_A           40 SLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------RISFCSQNS  108 (290)
T ss_dssp             ----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---------CEEEECSSC
T ss_pred             eEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---------EEEEEeCCC
Confidence            58999999863  6799999999999999999999999999999999999999999999987         599999999


Q ss_pred             CCCCCCCHHHHHh
Q psy16345        101 IFFPELTLRQTLE  113 (121)
Q Consensus       101 ~l~~~ltv~e~l~  113 (121)
                      .+++. |++||+.
T Consensus       109 ~l~~~-tv~enl~  120 (290)
T 2bbs_A          109 WIMPG-TIKENII  120 (290)
T ss_dssp             CCCSS-BHHHHHH
T ss_pred             ccCcc-cHHHHhh
Confidence            88875 9999997

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.90  E-value=5.5e-24  Score=183.48  Aligned_cols=96  Identities=27%  Similarity=0.475  Sum_probs=87.6

Q ss_pred             EEEEeeeEEEcCCc---ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345         21 ELVFSGLSVTLDKR---PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~~~---~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i   93 (121)
                      .++++|++++|+++   ++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.    +.+++++
T Consensus      1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 1109 (1284)
T 3g5u_A         1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQL 1109 (1284)
T ss_dssp             CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSC
T ss_pred             cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhce
Confidence            49999999999753   6999999999999999999999999999999999999999999999999986    3578889


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhccc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      +||+|++.+|. .|++||+.++..
T Consensus      1110 ~~v~Q~~~l~~-~ti~eNi~~~~~ 1132 (1284)
T 3g5u_A         1110 GIVSQEPILFD-CSIAENIAYGDN 1132 (1284)
T ss_dssp             EEEESSCCCCS-SBHHHHHTCCCS
T ss_pred             EEECCCCcccc-ccHHHHHhccCC
Confidence            99999998875 599999998753

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.83  E-value=3.7e-24  Score=147.44  Aligned_cols=91  Identities=15%  Similarity=0.105  Sum_probs=75.8

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhh-cccEEEEeeCC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRW-KRKICYVLQQD  100 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~-~~~i~~v~Q~~  100 (121)
                      ++.+++++.|+++.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.... .++  +++|++
T Consensus         8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~--~~~q~~   84 (158)
T 1htw_A            8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAG--KMIYHF   84 (158)
T ss_dssp             ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETT--EEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCC--cceecc
Confidence            34456778888788999999999999999999999999999999999999 99999999987764211 122  799998


Q ss_pred             CCCCCCCHHHHHhh-cc
Q psy16345        101 IFFPELTLRQTLEV-SI  116 (121)
Q Consensus       101 ~l~~~ltv~e~l~~-~~  116 (121)
                      .++ .+|+.||+.+ +.
T Consensus        85 ~l~-~ltv~e~l~~~g~  100 (158)
T 1htw_A           85 DLY-RLADPEELEFMGI  100 (158)
T ss_dssp             ECT-TCSCTTHHHHSTH
T ss_pred             ccc-cCCcHHHHHHcCh
Confidence            888 8999999854 53

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.83  E-value=1.3e-20  Score=152.64  Aligned_cols=87  Identities=24%  Similarity=0.291  Sum_probs=77.7

Q ss_pred             ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345         19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ   98 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q   98 (121)
                      ...++++++++.|++ ..|+.++|++++||++||+||||||||||+|+|+|+++|++|+|.+         ...++|++|
T Consensus       355 ~~~l~~~~l~~~~~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~---------~~~i~~v~Q  424 (607)
T 3bk7_A          355 ETLVEYPRLVKDYGS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---------DLTVAYKPQ  424 (607)
T ss_dssp             CEEEEECCEEEECSS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC---------CCCEEEECS
T ss_pred             ceEEEEeceEEEecc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE---------eeEEEEEec
Confidence            356999999999976 4699999999999999999999999999999999999999999976         246999999


Q ss_pred             CCCCCCCCCHHHHHhhc
Q psy16345         99 QDIFFPELTLRQTLEVS  115 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~  115 (121)
                      ++.+++.+||.+++...
T Consensus       425 ~~~~~~~~tv~e~~~~~  441 (607)
T 3bk7_A          425 YIKAEYEGTVYELLSKI  441 (607)
T ss_dssp             SCCCCCSSBHHHHHHHH
T ss_pred             CccCCCCCcHHHHHHhh
Confidence            98877788999988654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.83  E-value=1.9e-20  Score=149.85  Aligned_cols=87  Identities=26%  Similarity=0.302  Sum_probs=77.3

Q ss_pred             ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345         19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ   98 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q   98 (121)
                      ...++++++++.|++. .|+.++|+|++||++||+||||||||||+|+|+|+++|++|+|.+         ...++||+|
T Consensus       285 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~---------~~~i~~v~Q  354 (538)
T 1yqt_A          285 ETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW---------DLTVAYKPQ  354 (538)
T ss_dssp             CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC---------CCCEEEECS
T ss_pred             CeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE---------CceEEEEec
Confidence            3469999999999764 699999999999999999999999999999999999999999985         246999999


Q ss_pred             CCCCCCCCCHHHHHhhc
Q psy16345         99 QDIFFPELTLRQTLEVS  115 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~  115 (121)
                      ++..++.+||.+++...
T Consensus       355 ~~~~~~~~tv~~~~~~~  371 (538)
T 1yqt_A          355 YIKADYEGTVYELLSKI  371 (538)
T ss_dssp             SCCCCCSSBHHHHHHHH
T ss_pred             CCcCCCCCcHHHHHHhh
Confidence            98877788999887653

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.81  E-value=3.4e-20  Score=156.28  Aligned_cols=88  Identities=23%  Similarity=0.387  Sum_probs=76.4

Q ss_pred             cEEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEe
Q psy16345         20 LELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVL   97 (121)
Q Consensus        20 ~~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~   97 (121)
                      .+++++|++++|++  +++|+++||+|++|+++||+||||||||||+|+|+|+++|++|+|++++.       .+++|++
T Consensus       670 ~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-------~~I~yv~  742 (986)
T 2iw3_A          670 AIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-------CRIAYIK  742 (986)
T ss_dssp             EEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-------CCEEEEC
T ss_pred             ceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-------cceEeec
Confidence            46999999999964  67999999999999999999999999999999999999999999999752       2599999


Q ss_pred             eCCCC----CCCCCHHHHHhh
Q psy16345         98 QQDIF----FPELTLRQTLEV  114 (121)
Q Consensus        98 Q~~~l----~~~ltv~e~l~~  114 (121)
                      |++..    ....|+.+++.+
T Consensus       743 Q~~~~~l~~~~~~t~~e~i~~  763 (986)
T 2iw3_A          743 QHAFAHIESHLDKTPSEYIQW  763 (986)
T ss_dssp             HHHHHHGGGCTTSCHHHHHHH
T ss_pred             cchhhhhhcccccCHHHHHHH
Confidence            98531    234689998865

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.81  E-value=1.2e-19  Score=145.30  Aligned_cols=87  Identities=28%  Similarity=0.396  Sum_probs=77.6

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ   99 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~   99 (121)
                      ..++++++++.|++ ..|..++|+|++||++||+||||||||||+|+|+|+++|++|+|.+++        ..++|++|+
T Consensus       268 ~~l~~~~l~~~~~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~--------~~i~~~~q~  338 (538)
T 3ozx_A          268 TKMKWTKIIKKLGD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK--------QILSYKPQR  338 (538)
T ss_dssp             EEEEECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC--------CCEEEECSS
T ss_pred             ceEEEcceEEEECC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--------eeeEeechh
Confidence            46899999999977 458888999999999999999999999999999999999999998764        468999998


Q ss_pred             CCCCCCCCHHHHHhhc
Q psy16345        100 DIFFPELTLRQTLEVS  115 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~  115 (121)
                      ....+.+||++|+.+.
T Consensus       339 ~~~~~~~tv~~~l~~~  354 (538)
T 3ozx_A          339 IFPNYDGTVQQYLENA  354 (538)
T ss_dssp             CCCCCSSBHHHHHHHH
T ss_pred             cccccCCCHHHHHHHh
Confidence            7766678999999864

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.72  E-value=4.2e-20  Score=144.75  Aligned_cols=95  Identities=18%  Similarity=0.160  Sum_probs=81.7

Q ss_pred             EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCE---eCCh---------
Q psy16345         21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE---RLNK---------   87 (121)
Q Consensus        21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~---~~~~---------   87 (121)
                      .++++++++.|+ +..+|+++ |++.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|+   ++..         
T Consensus       131 ~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~  209 (438)
T 2dpy_A          131 PLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPD  209 (438)
T ss_dssp             TTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHH
T ss_pred             ceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcccc
Confidence            478899999997 57899999 999999999999999999999999999999999999999998   4421         


Q ss_pred             hhcccEEEEeeC-CCCCCCCCHHHHHhhcc
Q psy16345         88 RWKRKICYVLQQ-DIFFPELTLRQTLEVSI  116 (121)
Q Consensus        88 ~~~~~i~~v~Q~-~~l~~~ltv~e~l~~~~  116 (121)
                      .+++.++|++|+ ..+++++++.+|+.+..
T Consensus       210 ~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a  239 (438)
T 2dpy_A          210 GRARSVVIAAPADVSPLLRMQGAAYATRIA  239 (438)
T ss_dssp             HHHTEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred             ccCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence            256779999995 45667789999987643

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.72  E-value=6.7e-19  Score=142.63  Aligned_cols=89  Identities=21%  Similarity=0.268  Sum_probs=70.1

Q ss_pred             eeeEEEcCCc-ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEE---------EECCEeCCh------h
Q psy16345         25 SGLSVTLDKR-PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI---------RLNKERLNK------R   88 (121)
Q Consensus        25 ~~l~~~~~~~-~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i---------~~~g~~~~~------~   88 (121)
                      +|++++|+++ .+|+++| ++++||++||+||||||||||||+|+|+++|++|++         .++|.++..      .
T Consensus        95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~  173 (607)
T 3bk7_A           95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN  173 (607)
T ss_dssp             GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred             CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhh
Confidence            8999999876 4999999 999999999999999999999999999999999985         345544321      1


Q ss_pred             hcccEEEEeeCCCCCC---CCCHHHHHhh
Q psy16345         89 WKRKICYVLQQDIFFP---ELTLRQTLEV  114 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~---~ltv~e~l~~  114 (121)
                      .+..+++++|....++   ..|++|++..
T Consensus       174 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~  202 (607)
T 3bk7_A          174 GEIRPVVKPQYVDLLPKAVKGKVRELLKK  202 (607)
T ss_dssp             TSCCCEEECSCGGGGGGTCCSBHHHHHHH
T ss_pred             hhcceEEeechhhhchhhccccHHHHhhh
Confidence            2345789998643222   1389998864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.72  E-value=9.1e-18  Score=141.60  Aligned_cols=84  Identities=19%  Similarity=0.318  Sum_probs=68.6

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD  100 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~  100 (121)
                      .+...|++++|+++.+|+++||+|++|++++|+||||||||||||+|+|      |+|  +|.+....  .+++|++|+.
T Consensus       435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~~--~~~~~v~q~~  504 (986)
T 2iw3_A          435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQEE--CRTVYVEHDI  504 (986)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTTT--SCEEETTCCC
T ss_pred             eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccccc--eeEEEEcccc
Confidence            4677799999999999999999999999999999999999999999995      332  33332211  2478999875


Q ss_pred             -CCCCCCCHHHHHhh
Q psy16345        101 -IFFPELTLRQTLEV  114 (121)
Q Consensus       101 -~l~~~ltv~e~l~~  114 (121)
                       .+++.+|+.||+.+
T Consensus       505 ~~~~~~ltv~e~l~~  519 (986)
T 2iw3_A          505 DGTHSDTSVLDFVFE  519 (986)
T ss_dssp             CCCCTTSBHHHHHHT
T ss_pred             cccccCCcHHHHHHH
Confidence             67788999999975

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.72  E-value=8.8e-19  Score=140.19  Aligned_cols=91  Identities=20%  Similarity=0.223  Sum_probs=69.1

Q ss_pred             EEE-eeeEEEcCCc-ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEE---------EECCEeCCh---
Q psy16345         22 LVF-SGLSVTLDKR-PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI---------RLNKERLNK---   87 (121)
Q Consensus        22 i~~-~~l~~~~~~~-~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i---------~~~g~~~~~---   87 (121)
                      .++ +|++++|+++ .+++++| +|++||++||+||||||||||+|+|+|+++|++|++         .++|.++..   
T Consensus        21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~   99 (538)
T 1yqt_A           21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE   99 (538)
T ss_dssp             ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred             hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence            455 6899999876 5999999 999999999999999999999999999999999985         345544321   


Q ss_pred             ---hhcccEEEEeeCCCCCCC---CCHHHHHh
Q psy16345         88 ---RWKRKICYVLQQDIFFPE---LTLRQTLE  113 (121)
Q Consensus        88 ---~~~~~i~~v~Q~~~l~~~---ltv~e~l~  113 (121)
                         ..+..+++++|...+++.   .++.+++.
T Consensus       100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~  131 (538)
T 1yqt_A          100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLK  131 (538)
T ss_dssp             HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHH
T ss_pred             HHHHHhhhhhhhhhhhhhcchhhhccHHHHHh
Confidence               113458899987543332   37888775

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.69  E-value=2.1e-20  Score=147.27  Aligned_cols=84  Identities=17%  Similarity=0.060  Sum_probs=72.2

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc-E-EEECCEeCChhhcccEEEEee
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG-V-IRLNKERLNKRWKRKICYVLQ   98 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G-~-i~~~g~~~~~~~~~~i~~v~Q   98 (121)
                      +++++|+++.|+      +++|++++|++++|+||||||||||+|+|+|++.|++| + |.++|.     .++.++|++|
T Consensus       118 mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~-----~~~~i~~vpq  186 (460)
T 2npi_A          118 MKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD-----PQQPIFTVPG  186 (460)
T ss_dssp             HHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC-----TTSCSSSCSS
T ss_pred             hhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC-----ccCCeeeecc
Confidence            478889988885      79999999999999999999999999999999999999 9 999982     3567999999


Q ss_pred             CCC---CCCCCCHHHHHhhcc
Q psy16345         99 QDI---FFPELTLRQTLEVSI  116 (121)
Q Consensus        99 ~~~---l~~~ltv~e~l~~~~  116 (121)
                      +..   +.+.+|+++|+ ++.
T Consensus       187 ~~~l~~~~~~~tv~eni-~~~  206 (460)
T 2npi_A          187 CISATPISDILDAQLPT-WGQ  206 (460)
T ss_dssp             CCEEEECCSCCCTTCTT-CSC
T ss_pred             chhhcccccccchhhhh-ccc
Confidence            984   34456898888 643

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.68  E-value=1.5e-18  Score=130.21  Aligned_cols=80  Identities=18%  Similarity=0.214  Sum_probs=68.1

Q ss_pred             EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hh--cccEEEEeeCCC-CCCC
Q psy16345         37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RW--KRKICYVLQQDI-FFPE  105 (121)
Q Consensus        37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~--~~~i~~v~Q~~~-l~~~  105 (121)
                      +.+++|++++|++++|+||||||||||+++|+|+++|+.|+|.+.|.+..+        .+  +..++|++|++. +++.
T Consensus        90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~  169 (302)
T 3b9q_A           90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA  169 (302)
T ss_dssp             CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred             ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence            467899999999999999999999999999999999999999999988642        12  346999999988 8888


Q ss_pred             CCHHHHHhhcc
Q psy16345        106 LTLRQTLEVSI  116 (121)
Q Consensus       106 ltv~e~l~~~~  116 (121)
                      +++++++.++.
T Consensus       170 ~~v~e~l~~~~  180 (302)
T 3b9q_A          170 TVLSKAVKRGK  180 (302)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            89999998753

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.67  E-value=9.6e-18  Score=136.73  Aligned_cols=83  Identities=20%  Similarity=0.277  Sum_probs=43.8

Q ss_pred             CcceEEeeEEEEeCCeEEEEECCCCchHHHHH---------------------HHHHcCCCCC-------ccEEEECCEe
Q psy16345         33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLL---------------------NCLAGRVKLD-------SGVIRLNKER   84 (121)
Q Consensus        33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl---------------------~~l~gl~~~~-------~G~i~~~g~~   84 (121)
                      ...+|++|||+|++||++||+||||||||||+                     +++.++..|+       .+.+.+++.+
T Consensus        30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~  109 (670)
T 3ux8_A           30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT  109 (670)
T ss_dssp             CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred             CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence            45789999999999999999999999999998                     8899998888       4555566654


Q ss_pred             CChhhcccEEEEeeCC-------------------CCCCCCCHHHHHhhc
Q psy16345         85 LNKRWKRKICYVLQQD-------------------IFFPELTLRQTLEVS  115 (121)
Q Consensus        85 ~~~~~~~~i~~v~Q~~-------------------~l~~~ltv~e~l~~~  115 (121)
                      .....++.+++|+|.+                   ..++.+|++||+.+.
T Consensus       110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~  159 (670)
T 3ux8_A          110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFF  159 (670)
T ss_dssp             -----CCBHHHHTTCC-------------------------CC-------
T ss_pred             hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHh
Confidence            4322233344444432                   234567999998763

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.67  E-value=2.5e-20  Score=140.20  Aligned_cols=56  Identities=21%  Similarity=0.216  Sum_probs=51.8

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL   80 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~   80 (121)
                      .|++++|++.|+ .++|+++||+|++|++++|+||||||||||+++|+|++   +|+|..
T Consensus       101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~  156 (305)
T 2v9p_A          101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLS  156 (305)
T ss_dssp             HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEEC
T ss_pred             eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEE
Confidence            378899999997 78999999999999999999999999999999999998   788853

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.67  E-value=1.4e-17  Score=120.62  Aligned_cols=73  Identities=19%  Similarity=0.201  Sum_probs=49.5

Q ss_pred             CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHH
Q psy16345         32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQT  111 (121)
Q Consensus        32 ~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~  111 (121)
                      +++++|+++||++++|+++||+||||||||||+++|+|++    |.+.++      ..++.++|++|+. +++.+|+.++
T Consensus        10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~------~~~~~i~~v~~d~-~~~~l~~~~~   78 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE------QRQRKVVILSQDR-FYKVLTAEQK   78 (245)
T ss_dssp             -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC------GGGCSEEEEEGGG-GBCCCCHHHH
T ss_pred             CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc------ccCCceEEEeCCc-CccccCHhHh
Confidence            5678999999999999999999999999999999999975    433333      3467899999995 6778899998


Q ss_pred             Hhhc
Q psy16345        112 LEVS  115 (121)
Q Consensus       112 l~~~  115 (121)
                      +.+.
T Consensus        79 ~~~~   82 (245)
T 2jeo_A           79 AKAL   82 (245)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            7654

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.67  E-value=6.5e-18  Score=129.23  Aligned_cols=95  Identities=18%  Similarity=0.251  Sum_probs=71.7

Q ss_pred             EEeeeEEE---cCC--cceE---------EeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC-C-
Q psy16345         23 VFSGLSVT---LDK--RPIL---------KDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL-N-   86 (121)
Q Consensus        23 ~~~~l~~~---~~~--~~~l---------~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~-~-   86 (121)
                      ++++++|+   |..  ..+|         ++++|.+++|++++|+||||||||||+++|+|+++|++|.|.++|..- . 
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~  216 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL  216 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence            55666666   642  3344         999999999999999999999999999999999999999999987431 1 


Q ss_pred             hhhcccEEEEe-eCCCC--CCCCCHHHHHhhccc
Q psy16345         87 KRWKRKICYVL-QQDIF--FPELTLRQTLEVSIA  117 (121)
Q Consensus        87 ~~~~~~i~~v~-Q~~~l--~~~ltv~e~l~~~~~  117 (121)
                      ...++.++|++ |++.+  ++..|+++|+..++.
T Consensus       217 ~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~  250 (361)
T 2gza_A          217 PDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLR  250 (361)
T ss_dssp             TTCSSEEEEECC----------CCHHHHHHHHTT
T ss_pred             cccCCEEEEeecCccccccccccCHHHHHHHHHh
Confidence            12566799999 87654  367799999998764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.66  E-value=3e-18  Score=122.59  Aligned_cols=69  Identities=20%  Similarity=0.238  Sum_probs=45.7

Q ss_pred             CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEEEeeCCCCCCC
Q psy16345         33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICYVLQQDIFFPE  105 (121)
Q Consensus        33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~v~Q~~~l~~~  105 (121)
                      .+.-|+++||++++|++++|+||||||||||+++|+|++ |  |+|.+ |.++..     ..++.++|++|++.+|+.
T Consensus         9 ~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~   82 (218)
T 1z6g_A            9 HHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED   82 (218)
T ss_dssp             -------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred             ccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence            356799999999999999999999999999999999988 5  99998 665421     234678999998765543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.2e-16  Score=129.54  Aligned_cols=82  Identities=29%  Similarity=0.282  Sum_probs=68.4

Q ss_pred             eeeEEEcCC-cceEEeeEEEEeCC-----eEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345         25 SGLSVTLDK-RPILKDVSGVVKPG-----ELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ   98 (121)
Q Consensus        25 ~~l~~~~~~-~~~l~~vsl~i~~G-----~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q   98 (121)
                      +++++.|++ ..++++++|++.+|     |++||+||||||||||+|+|+|+++|++|+.      +   .+..++|++|
T Consensus       350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~---~~~~i~~~~q  420 (608)
T 3j16_B          350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------I---PKLNVSMKPQ  420 (608)
T ss_dssp             SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------C---CSCCEEEECS
T ss_pred             cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------c---cCCcEEEecc
Confidence            567788865 46899999999999     7899999999999999999999999999962      1   1346999999


Q ss_pred             CCCCCCCCCHHHHHhhc
Q psy16345         99 QDIFFPELTLRQTLEVS  115 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~  115 (121)
                      +.......|+++++...
T Consensus       421 ~~~~~~~~tv~e~~~~~  437 (608)
T 3j16_B          421 KIAPKFPGTVRQLFFKK  437 (608)
T ss_dssp             SCCCCCCSBHHHHHHHH
T ss_pred             cccccCCccHHHHHHHH
Confidence            97766667999987653

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.65  E-value=4.6e-18  Score=125.66  Aligned_cols=69  Identities=25%  Similarity=0.189  Sum_probs=44.7

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-hhcccEEEEeeCCCCCCCCCHHHHHhhccc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-RWKRKICYVLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      .++|+||||||||||+|+|+|+..|++|+|.++|.++.. ..++.++|++|++.+++.+||.||+.++..
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~   73 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQ   73 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhh
Confidence            479999999999999999999999999999999988753 345679999999999999999999888753

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.64  E-value=1e-17  Score=128.47  Aligned_cols=79  Identities=18%  Similarity=0.226  Sum_probs=69.2

Q ss_pred             EeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hh--cccEEEEeeCCC-CCCCC
Q psy16345         38 KDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RW--KRKICYVLQQDI-FFPEL  106 (121)
Q Consensus        38 ~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~--~~~i~~v~Q~~~-l~~~l  106 (121)
                      .+++|++++|++++|+||||||||||+++|+|+++|+.|+|.+.+.++.+        .+  +..++|++|++. +++.+
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~  227 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT  227 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence            56889999999999999999999999999999999999999999988742        12  346999999988 88888


Q ss_pred             CHHHHHhhcc
Q psy16345        107 TLRQTLEVSI  116 (121)
Q Consensus       107 tv~e~l~~~~  116 (121)
                      ++++++.++.
T Consensus       228 tv~e~l~~~~  237 (359)
T 2og2_A          228 VLSKAVKRGK  237 (359)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            9999998754

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.64  E-value=1.7e-18  Score=122.55  Aligned_cols=74  Identities=20%  Similarity=0.345  Sum_probs=47.8

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC----ChhhcccEEEEeeCCCCCCCCCHH
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL----NKRWKRKICYVLQQDIFFPELTLR  109 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~----~~~~~~~i~~v~Q~~~l~~~ltv~  109 (121)
                      .+++++  .++++|++++|+||||||||||+|+|+|+++.    +.+++...    ....++.++|+||++.+|+.+++.
T Consensus         9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~   82 (207)
T 1znw_A            9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ   82 (207)
T ss_dssp             ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred             CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence            456777  69999999999999999999999999999863    33333211    112346799999998777766766


Q ss_pred             HHHh
Q psy16345        110 QTLE  113 (121)
Q Consensus       110 e~l~  113 (121)
                      +++.
T Consensus        83 ~~l~   86 (207)
T 1znw_A           83 GELL   86 (207)
T ss_dssp             TCEE
T ss_pred             CCce
Confidence            6653

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.63  E-value=4.5e-19  Score=132.82  Aligned_cols=93  Identities=10%  Similarity=0.146  Sum_probs=79.0

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEE-------------------eCCeEEEEECCCCchHHHHHHHHHcCCC--CCccEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVV-------------------KPGELLAVMGPSGCGKTTLLNCLAGRVK--LDSGVIR   79 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i-------------------~~G~~~~liG~nGsGKSTLl~~l~gl~~--~~~G~i~   79 (121)
                      .|++++|++.|  .++++++++.+                   .+|+++||+|+||||||||+++|+|++.  |++|+|.
T Consensus        37 ~i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~  114 (308)
T 1sq5_A           37 DLSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE  114 (308)
T ss_dssp             TCCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred             ccchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence            47889999999  47899999988                   9999999999999999999999999988  9999999


Q ss_pred             E---CCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         80 L---NKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        80 ~---~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +   +|.......++.++++ |...+++.+++.+++.+..
T Consensus       115 vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~  153 (308)
T 1sq5_A          115 LITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVS  153 (308)
T ss_dssp             EEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHH
T ss_pred             EEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHH
Confidence            9   8776554444567888 8777777889999987643

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.63  E-value=1.3e-17  Score=132.35  Aligned_cols=80  Identities=15%  Similarity=0.109  Sum_probs=69.7

Q ss_pred             EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------h--hcccEEEEeeCCCCCCCC
Q psy16345         37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------R--WKRKICYVLQQDIFFPEL  106 (121)
Q Consensus        37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~--~~~~i~~v~Q~~~l~~~l  106 (121)
                      -+++||++.+|++++|+|+||||||||+++|+|++++..|+|.+.+.+..+        .  .++.++|++|+..+++.+
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~  362 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS  362 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence            468999999999999999999999999999999999999999998766532        1  256799999998888888


Q ss_pred             CHHHHHhhcc
Q psy16345        107 TLRQTLEVSI  116 (121)
Q Consensus       107 tv~e~l~~~~  116 (121)
                      ++++|+.++.
T Consensus       363 tV~e~l~~a~  372 (503)
T 2yhs_A          363 VIFDAIQAAK  372 (503)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998865

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.63  E-value=6.3e-19  Score=125.96  Aligned_cols=66  Identities=20%  Similarity=0.207  Sum_probs=50.9

Q ss_pred             EcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-hhhcccEEEEeeCC
Q psy16345         30 TLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-KRWKRKICYVLQQD  100 (121)
Q Consensus        30 ~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-~~~~~~i~~v~Q~~  100 (121)
                      .|+++.+|+++    ++|++++|+||||||||||+|+|+|+ +|++|+|........ ..+++.++|++|++
T Consensus         9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~   75 (208)
T 3b85_A            9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL   75 (208)
T ss_dssp             SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--
T ss_pred             CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH
Confidence            45667788886    89999999999999999999999999 999999843111111 23466799999986

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.61  E-value=2.7e-18  Score=129.30  Aligned_cols=78  Identities=13%  Similarity=0.138  Sum_probs=66.7

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEE-----------------------EeCCeEEEEECCCCchHHHHHHHHHcCCCCCccE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGV-----------------------VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV   77 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~-----------------------i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~   77 (121)
                      .|++++|++.|+  ++++++++.                       +++|+++||+||||||||||+++|+|+++|..|.
T Consensus        43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~  120 (312)
T 3aez_A           43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH  120 (312)
T ss_dssp             CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred             eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence            488899999994  566666654                       8999999999999999999999999999887553


Q ss_pred             EEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345         78 IRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEV  114 (121)
Q Consensus        78 i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~  114 (121)
                                   +.++||+|++.+++. |+++|+.+
T Consensus       121 -------------~~v~~v~qd~~~~~~-t~~e~~~~  143 (312)
T 3aez_A          121 -------------PRVDLVTTDGFLYPN-AELQRRNL  143 (312)
T ss_dssp             -------------CCEEEEEGGGGBCCH-HHHHHTTC
T ss_pred             -------------CeEEEEecCccCCcc-cHHHHHHH
Confidence                         468999999988888 99999865

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.60  E-value=4.4e-18  Score=132.91  Aligned_cols=86  Identities=24%  Similarity=0.278  Sum_probs=61.6

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeE--EEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGEL--LAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~--~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~   94 (121)
                      .+++++ ++.|++.+ ++++||++++|++  ++|+||||||||||+++|+|+.        ++|.++.    ...++.++
T Consensus        16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~   85 (427)
T 2qag_B           16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNT   85 (427)
T ss_dssp             -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEE
T ss_pred             eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEE
Confidence            356677 88898877 9999999999999  9999999999999999999984        2222221    12345799


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |++|++.+++.+|+.||+.++.
T Consensus        86 ~v~Q~~~l~~~ltv~D~~~~g~  107 (427)
T 2qag_B           86 YDLQESNVRLKLTIVSTVGFGD  107 (427)
T ss_dssp             EEEEC--CEEEEEEEEEECCCC
T ss_pred             EEeecCccccccchhhhhhhhh
Confidence            9999988877788888877654

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.60  E-value=1.1e-17  Score=135.56  Aligned_cols=92  Identities=18%  Similarity=0.344  Sum_probs=59.7

Q ss_pred             EEEEeeeEEEcCC--cceEEee----------EEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-CccEEEECCEeCC-
Q psy16345         21 ELVFSGLSVTLDK--RPILKDV----------SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-DSGVIRLNKERLN-   86 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~v----------sl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-~~G~i~~~g~~~~-   86 (121)
                      .++++++++.|+.  +++++.+          +++++.   +||+|+|||||||||++|+|+..| ++|.|.++|.++. 
T Consensus        10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~   86 (608)
T 3szr_A           10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL   86 (608)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence            4788999999965  3455444          366665   999999999999999999999988 7999999998852 


Q ss_pred             ------hhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         87 ------KRWKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        87 ------~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                            ..+++.++|++|++.+++.++|++|+.+.
T Consensus        87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~  121 (608)
T 3szr_A           87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA  121 (608)
T ss_dssp             EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH
T ss_pred             ecCCccccceeEEeeecccccCCCHHHHHHHHHHH
Confidence                  24677899999999999999999999764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.59  E-value=9.9e-18  Score=130.54  Aligned_cols=77  Identities=18%  Similarity=0.281  Sum_probs=63.1

Q ss_pred             cceEEeeEEEEeCCe--------------------EEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccE
Q psy16345         34 RPILKDVSGVVKPGE--------------------LLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKI   93 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~--------------------~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i   93 (121)
                      +.++++++|++++|+                    ++||+||||||||||+|+|+|+.+|++|+|.++|.+..   +  .
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t---~--~  110 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT---M--E  110 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-------C--C
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc---e--e
Confidence            468999999999999                    99999999999999999999999999999999987653   1  2


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +|++|++ .++.++++|++.++.
T Consensus       111 ~~v~q~~-~~~~ltv~D~~g~~~  132 (413)
T 1tq4_A          111 RHPYKHP-NIPNVVFWDLPGIGS  132 (413)
T ss_dssp             CEEEECS-SCTTEEEEECCCGGG
T ss_pred             EEecccc-ccCCeeehHhhcccc
Confidence            7899985 456778777765543

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.58  E-value=2.2e-16  Score=118.48  Aligned_cols=71  Identities=15%  Similarity=0.160  Sum_probs=61.9

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hh--cccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RW--KRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~--~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      +|++++|+||||||||||+++|+|+++|+.|+|.+.|.++.+        .+  +..++|++|++.++|.+++++|+.++
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999988642        12  34689999999888888999998764


Q ss_pred             c
Q psy16345        116 I  116 (121)
Q Consensus       116 ~  116 (121)
                      .
T Consensus       181 ~  181 (304)
T 1rj9_A          181 K  181 (304)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.57  E-value=1.7e-16  Score=118.49  Aligned_cols=73  Identities=22%  Similarity=0.226  Sum_probs=51.7

Q ss_pred             EEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEE---CCEeCChh----hcccEEEEeeCCC-------------
Q psy16345         42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL---NKERLNKR----WKRKICYVLQQDI-------------  101 (121)
Q Consensus        42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~---~g~~~~~~----~~~~i~~v~Q~~~-------------  101 (121)
                      |++.+|++++|+||||||||||+|+|+|+.+|+.|+|.+   +|+.+.+.    ..+.++||+|.|.             
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~  243 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE  243 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence            345679999999999999999999999999999999999   88876531    1236899999975             


Q ss_pred             ---CCCCCCHHHHHhhc
Q psy16345        102 ---FFPELTLRQTLEVS  115 (121)
Q Consensus       102 ---l~~~ltv~e~l~~~  115 (121)
                         +|+++++ +|+.|.
T Consensus       244 ~~~l~~~~~~-~n~~~~  259 (301)
T 1u0l_A          244 LKHYFKEFGD-KQCFFS  259 (301)
T ss_dssp             HGGGSTTSSS-CCCSST
T ss_pred             HHHHHHhccc-ccCcCC
Confidence               5788888 888774

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.56  E-value=2.2e-18  Score=130.85  Aligned_cols=84  Identities=12%  Similarity=0.071  Sum_probs=73.7

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hhccc
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RWKRK   92 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~~~~   92 (121)
                      +++++++++.|+.+.++++++|++.+|++++|+|+||||||||+++|+|++.|+.|+|.+.+.+...        ..+++
T Consensus        29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~  108 (337)
T 2qm8_A           29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR  108 (337)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred             HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence            3778889999977889999999999999999999999999999999999999999999999887632        23557


Q ss_pred             EEEEeeCCCCCC
Q psy16345         93 ICYVLQQDIFFP  104 (121)
Q Consensus        93 i~~v~Q~~~l~~  104 (121)
                      ++|++|++.++.
T Consensus       109 i~~v~q~~~~~~  120 (337)
T 2qm8_A          109 MARLAIDRNAFI  120 (337)
T ss_dssp             STTGGGCTTEEE
T ss_pred             heeeccCccccc
Confidence            899999988765

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.55  E-value=1.2e-16  Score=121.03  Aligned_cols=77  Identities=17%  Similarity=0.261  Sum_probs=63.8

Q ss_pred             ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC--hhhcccEEEEeeCCCCCCCCCHHHHH
Q psy16345         35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--KRWKRKICYVLQQDIFFPELTLRQTL  112 (121)
Q Consensus        35 ~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~--~~~~~~i~~v~Q~~~l~~~ltv~e~l  112 (121)
                      +++++++|.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+..  ...++.++++++     ...+.+.++
T Consensus       159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~g-----gg~~~r~~l  233 (330)
T 2pt7_A          159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFG-----GNITSADCL  233 (330)
T ss_dssp             HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECB-----TTBCHHHHH
T ss_pred             HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeC-----CChhHHHHH
Confidence            4789999999999999999999999999999999999999999999986532  124566888875     355777777


Q ss_pred             hhcc
Q psy16345        113 EVSI  116 (121)
Q Consensus       113 ~~~~  116 (121)
                      ..++
T Consensus       234 a~aL  237 (330)
T 2pt7_A          234 KSCL  237 (330)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            6654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.55  E-value=4.4e-17  Score=129.60  Aligned_cols=81  Identities=19%  Similarity=0.167  Sum_probs=67.0

Q ss_pred             EEEEeeeEEEcCCcceEEeeEE-EEeCCeEEEEECCCCchHHHHHHH--HHcCCCCCccEEEECCEeCCh---hhcccEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSG-VVKPGELLAVMGPSGCGKTTLLNC--LAGRVKLDSGVIRLNKERLNK---RWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl-~i~~G~~~~liG~nGsGKSTLl~~--l~gl~~~~~G~i~~~g~~~~~---~~~~~i~   94 (121)
                      .++.+++.+...+.++|++++| .+++|++++|+||||||||||+++  ++|+.+|.+|.|+++|.+...   ..++.++
T Consensus        12 ~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g   91 (525)
T 1tf7_A           12 NSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFG   91 (525)
T ss_dssp             --CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGT
T ss_pred             CccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcC
Confidence            4666667666667889999999 999999999999999999999999  689999899999999987432   3356789


Q ss_pred             EEeeCCC
Q psy16345         95 YVLQQDI  101 (121)
Q Consensus        95 ~v~Q~~~  101 (121)
                      |++|++.
T Consensus        92 ~~~q~~~   98 (525)
T 1tf7_A           92 WDLAKLV   98 (525)
T ss_dssp             CCHHHHH
T ss_pred             CChHHhh
Confidence            9998753

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.55  E-value=2.7e-17  Score=118.26  Aligned_cols=70  Identities=20%  Similarity=0.222  Sum_probs=52.4

Q ss_pred             eeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC--CccEEEECCEeCChhhcccEEEEeeCCCCCCCCCH
Q psy16345         39 DVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL--DSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTL  108 (121)
Q Consensus        39 ~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv  108 (121)
                      +-.-..++|++++|+||||||||||+++|+|+++|  ..|.|.+.+++.....++.++|+||++.+|+.+++
T Consensus         8 ~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~   79 (219)
T 1s96_A            8 HHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMIS   79 (219)
T ss_dssp             -------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred             cccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHh
Confidence            33456799999999999999999999999999885  68888888766543345678999998776665555

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.54  E-value=1.1e-15  Score=121.03  Aligned_cols=52  Identities=12%  Similarity=0.076  Sum_probs=49.1

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN   86 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~   86 (121)
                      ..+|+++||++++ ++++|+|||||||||||++|+|+++|++|+|.++|+++.
T Consensus        17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~   68 (483)
T 3euj_A           17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA   68 (483)
T ss_dssp             ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred             cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence            4689999999999 999999999999999999999999999999999998764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.54  E-value=4.1e-16  Score=118.94  Aligned_cols=79  Identities=20%  Similarity=0.222  Sum_probs=67.2

Q ss_pred             EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----------h
Q psy16345         21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----------R   88 (121)
Q Consensus        21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----------~   88 (121)
                      .++.+++++.|+ +..+++++ |.|.+|++++|+|+||||||||+++|+|+.+|+.|.+.+.|++...           .
T Consensus        45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~  123 (347)
T 2obl_A           45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQST  123 (347)
T ss_dssp             STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHH
T ss_pred             CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhh
Confidence            478899999997 67899999 9999999999999999999999999999999999999998865211           1


Q ss_pred             hcccEEEEeeCC
Q psy16345         89 WKRKICYVLQQD  100 (121)
Q Consensus        89 ~~~~i~~v~Q~~  100 (121)
                      +++.+.+++|..
T Consensus       124 ~~~~v~~~~~~~  135 (347)
T 2obl_A          124 LSKCVLVVTTSD  135 (347)
T ss_dssp             HTTEEEEEECTT
T ss_pred             hhceEEEEECCC
Confidence            345578888753

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.52  E-value=2.4e-14  Score=109.98  Aligned_cols=75  Identities=17%  Similarity=0.295  Sum_probs=60.1

Q ss_pred             ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC--------------------------------------CCcc
Q psy16345         35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK--------------------------------------LDSG   76 (121)
Q Consensus        35 ~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~--------------------------------------~~~G   76 (121)
                      .++++++|++.+| +++|+|+|||||||||++|+++..                                      +..|
T Consensus        49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~  127 (415)
T 4aby_A           49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG  127 (415)
T ss_dssp             TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred             cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence            5799999999999 999999999999999999977664                                      3478


Q ss_pred             EEEECCEeCCh----hh-cccEEEEeeCCCCCCCCCHHHH
Q psy16345         77 VIRLNKERLNK----RW-KRKICYVLQQDIFFPELTLRQT  111 (121)
Q Consensus        77 ~i~~~g~~~~~----~~-~~~i~~v~Q~~~l~~~ltv~e~  111 (121)
                      .++++|+++..    .+ ...+++++|+..++.. +..+.
T Consensus       128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~  166 (415)
T 4aby_A          128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQ  166 (415)
T ss_dssp             EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHH
T ss_pred             EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHH
Confidence            89999999863    23 3348999998776543 44433

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.52  E-value=1.9e-15  Score=114.51  Aligned_cols=73  Identities=14%  Similarity=0.086  Sum_probs=62.8

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hhc--ccEEEEeeCCCCCCCCCHHHHHh
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RWK--RKICYVLQQDIFFPELTLRQTLE  113 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~~--~~i~~v~Q~~~l~~~ltv~e~l~  113 (121)
                      .++|++++|+||||||||||+++|+|+++|+.|+|.+.+.++.+        .++  ..+.|++|...++|.+++++|+.
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~  205 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ  205 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence            36899999999999999999999999999999999999988742        122  34669999998999899999998


Q ss_pred             hcc
Q psy16345        114 VSI  116 (121)
Q Consensus       114 ~~~  116 (121)
                      ++.
T Consensus       206 ~~~  208 (328)
T 3e70_C          206 HAK  208 (328)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.51  E-value=6.5e-16  Score=115.51  Aligned_cols=83  Identities=22%  Similarity=0.207  Sum_probs=34.7

Q ss_pred             eeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC-CCCCccEEEECCEeCCh-hhcccEEEEeeCCCC
Q psy16345         25 SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR-VKLDSGVIRLNKERLNK-RWKRKICYVLQQDIF  102 (121)
Q Consensus        25 ~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl-~~~~~G~i~~~g~~~~~-~~~~~i~~v~Q~~~l  102 (121)
                      .||+++|+++.++++++|+|      +|+|+||+|||||+++|+|. ..|++| +.++|.++.. ...+.+++++|...+
T Consensus         2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~   74 (301)
T 2qnr_A            2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGV   74 (301)
T ss_dssp             ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---C
T ss_pred             CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCc
Confidence            47899999999999999998      99999999999999999997 888889 8877766542 123457889987766


Q ss_pred             CCCCCHHHHHhh
Q psy16345        103 FPELTLRQTLEV  114 (121)
Q Consensus       103 ~~~ltv~e~l~~  114 (121)
                      ...++++|+..+
T Consensus        75 ~~~ltv~Dt~g~   86 (301)
T 2qnr_A           75 KLRLTVVDTPGY   86 (301)
T ss_dssp             CEEEEEEEEC--
T ss_pred             ccCcchhhhhhh
Confidence            666666665544

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.49  E-value=4.3e-16  Score=108.80  Aligned_cols=68  Identities=19%  Similarity=0.370  Sum_probs=49.1

Q ss_pred             EEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEEeeCCCCCCCCCHHHHH
Q psy16345         41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYVLQQDIFFPELTLRQTL  112 (121)
Q Consensus        41 sl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v~Q~~~l~~~ltv~e~l  112 (121)
                      |+++++|++++|+||||||||||+++|+|+++    .+.+.+....+    ..+..++|++|++.+++.+++.+++
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF   72 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence            57788999999999999999999999999864    46777665542    2345688999987766655554443

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.48  E-value=1.8e-14  Score=107.67  Aligned_cols=68  Identities=19%  Similarity=0.186  Sum_probs=51.5

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEE---CCEeCCh---hhc-ccEEEEeeCCCCC-----CCCCHHH
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL---NKERLNK---RWK-RKICYVLQQDIFF-----PELTLRQ  110 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~---~g~~~~~---~~~-~~i~~v~Q~~~l~-----~~ltv~e  110 (121)
                      ++.+|++++|+||||||||||+|+|+ +..|..|+|.+   +|+...+   ..+ +.++|++|+|.+.     +++|+ +
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e  238 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R  238 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence            44579999999999999999999999 99999999999   8887653   112 3689999998653     67889 8


Q ss_pred             HH
Q psy16345        111 TL  112 (121)
Q Consensus       111 ~l  112 (121)
                      |+
T Consensus       239 ~l  240 (302)
T 2yv5_A          239 EV  240 (302)
T ss_dssp             GG
T ss_pred             HH
Confidence            87

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.47  E-value=1.1e-14  Score=117.96  Aligned_cols=53  Identities=28%  Similarity=0.495  Sum_probs=47.0

Q ss_pred             eeeEEEcCCc-ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEE
Q psy16345         25 SGLSVTLDKR-PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI   78 (121)
Q Consensus        25 ~~l~~~~~~~-~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i   78 (121)
                      ++++++|+.. ..+++++ .+++|+++||+||||||||||||+|+|+++|++|+|
T Consensus        81 ~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i  134 (608)
T 3j16_B           81 AHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF  134 (608)
T ss_dssp             TTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             CCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence            3578999764 4677777 689999999999999999999999999999999987

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.47  E-value=1.7e-15  Score=111.39  Aligned_cols=71  Identities=23%  Similarity=0.289  Sum_probs=57.1

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC-ccEEEECCEeCChhhcccEEEEee
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD-SGVIRLNKERLNKRWKRKICYVLQ   98 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~-~G~i~~~g~~~~~~~~~~i~~v~Q   98 (121)
                      ++++++++.    ++|++++  +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++....+..+++++|
T Consensus         6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q   77 (261)
T 2eyu_A            6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQ   77 (261)
T ss_dssp             CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEE
T ss_pred             CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeH
Confidence            345666542    5899999  8999999999999999999999999999987 899999987764323334566777

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.47  E-value=7e-15  Score=110.61  Aligned_cols=71  Identities=18%  Similarity=0.196  Sum_probs=44.5

Q ss_pred             EEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEE---CCEeCCh--hh-cccEEEEeeCCCCCC----CCCHHHH
Q psy16345         42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL---NKERLNK--RW-KRKICYVLQQDIFFP----ELTLRQT  111 (121)
Q Consensus        42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~---~g~~~~~--~~-~~~i~~v~Q~~~l~~----~ltv~e~  111 (121)
                      +++.+|++++|+|+||+|||||+|+|+|+..+..|+|.+   .|+..++  .+ +..++|++|.|.+..    ++|+ |+
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~  246 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE  246 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence            567799999999999999999999999999999999998   7776542  22 222799999987665    6788 88


Q ss_pred             Hh
Q psy16345        112 LE  113 (121)
Q Consensus       112 l~  113 (121)
                      +.
T Consensus       247 l~  248 (307)
T 1t9h_A          247 LG  248 (307)
T ss_dssp             HG
T ss_pred             HH
Confidence            84

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.47  E-value=1.4e-15  Score=118.58  Aligned_cols=87  Identities=17%  Similarity=0.125  Sum_probs=55.3

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---hhhcccEEEEe
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---KRWKRKICYVL   97 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~---~~~~~~i~~v~   97 (121)
                      ++.+++++++|+++.++++++|+|      +|+|+||||||||+++|+|+..+..|   .++..+.   ....+.+++++
T Consensus        11 ~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~t~~~~~i~~v~   81 (418)
T 2qag_C           11 YVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKKTVQVEQSKVLI   81 (418)
T ss_dssp             ----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC-----CCEEEEEECC-
T ss_pred             cEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCccceeeeeEEEEE
Confidence            489999999999999999999998      99999999999999999999875544   1221111   11234588888


Q ss_pred             eCCCCCCCCCHHHHHhhcc
Q psy16345         98 QQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        98 Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |+..+++.+|++|++.++.
T Consensus        82 q~~~~~~~Ltv~Dt~g~~~  100 (418)
T 2qag_C           82 KEGGVQLLLTIVDTPGFGD  100 (418)
T ss_dssp             -----CEEEEEEECC----
T ss_pred             ecCCcccceeeeechhhhh
Confidence            8877776777777766543

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=99.46  E-value=9.5e-16  Score=110.95  Aligned_cols=72  Identities=14%  Similarity=0.253  Sum_probs=51.7

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh------------
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK------------   87 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~------------   87 (121)
                      ..|+++|+...++.       ++++.+ ++++|+|||||||||||++|+|++.|++|+|.++|.++..            
T Consensus         8 ~~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   79 (227)
T 1qhl_A            8 RSLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHG   79 (227)
T ss_dssp             EEEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGG
T ss_pred             eEEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhh
Confidence            35788888655532       566666 8999999999999999999999999999999999987621            


Q ss_pred             hhcccEEEEeeC
Q psy16345         88 RWKRKICYVLQQ   99 (121)
Q Consensus        88 ~~~~~i~~v~Q~   99 (121)
                      ..+..++|++|+
T Consensus        80 ~~~~~i~~v~~~   91 (227)
T 1qhl_A           80 KLKAGVCYSMLD   91 (227)
T ss_dssp             GBCSSEEEEEEE
T ss_pred             HhhcCcEEEEEe
Confidence            135679999985

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.45  E-value=7.5e-15  Score=117.53  Aligned_cols=53  Identities=28%  Similarity=0.323  Sum_probs=44.0

Q ss_pred             eeeEEEcCCcceEEeeEEE-EeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEE
Q psy16345         25 SGLSVTLDKRPILKDVSGV-VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI   78 (121)
Q Consensus        25 ~~l~~~~~~~~~l~~vsl~-i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i   78 (121)
                      ++.+.+|+... ++-..|. .++||++||+||||||||||+|+|+|+++|++|+|
T Consensus         3 ~~~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i   56 (538)
T 3ozx_A            3 GEVIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP   56 (538)
T ss_dssp             CCEEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred             CCCceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence            45788897532 4444553 36999999999999999999999999999999998

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.42  E-value=5.4e-15  Score=102.29  Aligned_cols=69  Identities=19%  Similarity=0.162  Sum_probs=51.2

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChh--hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~--~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      .+++|++++|+|+||||||||+|+|++.  +..|.|.+++.++...  .++.++|++|+..  +.+++.+++.+.
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~   75 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADV   75 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHH
Confidence            4789999999999999999999999998  6789999998765321  1233566666532  345788887653

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.40  E-value=3.4e-14  Score=99.97  Aligned_cols=52  Identities=25%  Similarity=0.375  Sum_probs=45.6

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC--hhhcccEEEEeeCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--KRWKRKICYVLQQD  100 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~--~~~~~~i~~v~Q~~  100 (121)
                      |++++|+||||||||||+++|+|+++ ++| |.++|....  +.++++++|++|+.
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~   54 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL   54 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec
Confidence            78999999999999999999999998 889 998887764  24677899999974

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.40  E-value=1.1e-15  Score=119.10  Aligned_cols=91  Identities=18%  Similarity=0.224  Sum_probs=66.3

Q ss_pred             EEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hhcccEE
Q psy16345         23 VFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RWKRKIC   94 (121)
Q Consensus        23 ~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~~~~i~   94 (121)
                      +++++.+.|+...+|+++ +. .+|++++|+|||||||||||++|+|++.+.+|+|.+.+.++..        ...+.++
T Consensus       145 ~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g  222 (418)
T 1p9r_A          145 DLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVD  222 (418)
T ss_dssp             CGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGT
T ss_pred             CHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccC
Confidence            344455555444567777 43 7999999999999999999999999999999999998877631        1234455


Q ss_pred             EEe---------eCCCC--CCC----CCHHHHHhhc
Q psy16345         95 YVL---------QQDIF--FPE----LTLRQTLEVS  115 (121)
Q Consensus        95 ~v~---------Q~~~l--~~~----ltv~e~l~~~  115 (121)
                      +.+         |++.+  +.+    .|+.+++.++
T Consensus       223 ~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~  258 (418)
T 1p9r_A          223 MTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQAS  258 (418)
T ss_dssp             BCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHH
T ss_pred             cCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHH
Confidence            555         88764  233    5888888764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.40  E-value=6.6e-14  Score=107.26  Aligned_cols=74  Identities=19%  Similarity=0.204  Sum_probs=51.7

Q ss_pred             EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-CCccEEEEC-CEeCChhhcccEEEEeeCCCCCCCCCHHHH
Q psy16345         37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-LDSGVIRLN-KERLNKRWKRKICYVLQQDIFFPELTLRQT  111 (121)
Q Consensus        37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-~~~G~i~~~-g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~  111 (121)
                      ++++++. .+|++++|+|+||||||||+++|+|+.. +..|+|.+. |..........+++++|+..+++..+++++
T Consensus       206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~  281 (358)
T 2rcn_A          206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF  281 (358)
T ss_dssp             HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred             HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh
Confidence            4555554 4899999999999999999999999999 999999987 655433445678999998877766677664

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.39  E-value=1.3e-13  Score=112.35  Aligned_cols=35  Identities=43%  Similarity=0.543  Sum_probs=32.5

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      ..+|++|||+|++||++||+||||||||||+++|+
T Consensus       335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            46899999999999999999999999999998754

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.38  E-value=1.2e-14  Score=102.77  Aligned_cols=70  Identities=26%  Similarity=0.333  Sum_probs=51.3

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHcCCCC-------CccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-------DSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-------~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      -+++|++++|+||||||||||+++|+|+..+       ..+.+++++....  ..+++++++|...+++. ++.+|+.+.
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~~~~i~~~~~~~~~~~~-~~~~~~~~~   97 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-EVLKHIYVA   97 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--CHHHHHHHHHHTTSCHH-HHHHTEEEE
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--CHHHHHHHHHHcCCCHH-HHhhcEEEE
Confidence            6899999999999999999999999995544       3447777765421  12245666777666665 777776654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.38  E-value=2.3e-13  Score=93.65  Aligned_cols=43  Identities=21%  Similarity=0.303  Sum_probs=35.4

Q ss_pred             eeEEEEeCCeEEEEECCCCchHHHHHH------------HHHcCCCCCccEEEEC
Q psy16345         39 DVSGVVKPGELLAVMGPSGCGKTTLLN------------CLAGRVKLDSGVIRLN   81 (121)
Q Consensus        39 ~vsl~i~~G~~~~liG~nGsGKSTLl~------------~l~gl~~~~~G~i~~~   81 (121)
                      ++||++++|++++|+||||||||||+|            .+.|+..++.|.+.+.
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~   55 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVT   55 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGH
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhH
Confidence            689999999999999999999999999            6666666655554443

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.37  E-value=3.7e-13  Score=94.56  Aligned_cols=54  Identities=22%  Similarity=0.338  Sum_probs=44.2

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCC--CCCCHHHHHhhc
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFF--PELTLRQTLEVS  115 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~--~~ltv~e~l~~~  115 (121)
                      .++|+++||+|+||||||||+++|+|++.|                  .++|++|++.++  ..++++++..+.
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~------------------~i~~v~~d~~~~~~~~~~~~~~~~~~   58 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE------------------RVALLPMDHYYKDLGHLPLEERLRVN   58 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG------------------GEEEEEGGGCBCCCTTSCHHHHHHSC
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC------------------CeEEEecCccccCcccccHHHhcCCC
Confidence            478999999999999999999999998754                  488999998766  557888876553

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.36  E-value=1.6e-14  Score=110.96  Aligned_cols=70  Identities=26%  Similarity=0.302  Sum_probs=55.2

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHHcCCCCC-ccEEEECCEeCChhhcccEEEEee-----CCCCCCCCCHHHHHhh
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLAGRVKLD-SGVIRLNKERLNKRWKRKICYVLQ-----QDIFFPELTLRQTLEV  114 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~-~G~i~~~g~~~~~~~~~~i~~v~Q-----~~~l~~~ltv~e~l~~  114 (121)
                      +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++...++..++||+|     ++..|. .++++++..
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~-~~l~~~L~~  208 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFA-DALRAALRE  208 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSH-HHHHHHTTS
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHH-HHHHHHhhh
Confidence            7899999999999999999999999999887 899987766654344567899999     544442 356666654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.33  E-value=2.8e-13  Score=96.82  Aligned_cols=38  Identities=34%  Similarity=0.415  Sum_probs=22.9

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHH-cCC
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA-GRV   71 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~-gl~   71 (121)
                      .+..+++||++++|++++|+||||||||||+++|+ |++
T Consensus        14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            45789999999999999999999999999999999 998

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=99.31  E-value=4.1e-13  Score=106.89  Aligned_cols=81  Identities=20%  Similarity=0.193  Sum_probs=59.7

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe-CChhhcccEEEEeeCCCCCCCCCHHHHH
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER-LNKRWKRKICYVLQQDIFFPELTLRQTL  112 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~-~~~~~~~~i~~v~Q~~~l~~~ltv~e~l  112 (121)
                      ..+++++++.+++|+.++|+|||||||||||++|+|+++|++|.|.+.|.. +.......++++.|........+..+++
T Consensus       247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l  326 (511)
T 2oap_1          247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLL  326 (511)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHH
Confidence            356788999999999999999999999999999999999999999998754 2211123456666554322234555554


Q ss_pred             hh
Q psy16345        113 EV  114 (121)
Q Consensus       113 ~~  114 (121)
                      ..
T Consensus       327 ~~  328 (511)
T 2oap_1          327 RA  328 (511)
T ss_dssp             HT
T ss_pred             HH
Confidence            43

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.30  E-value=1.2e-13  Score=114.40  Aligned_cols=82  Identities=16%  Similarity=0.127  Sum_probs=57.0

Q ss_pred             EEEeeeEEEc---CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-CCccEEEECCEeCChhhcccEEEEe
Q psy16345         22 LVFSGLSVTL---DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-LDSGVIRLNKERLNKRWKRKICYVL   97 (121)
Q Consensus        22 i~~~~l~~~~---~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-~~~G~i~~~g~~~~~~~~~~i~~v~   97 (121)
                      +++++..+..   +++.+++|++|+   |++++|+||||||||||||+|+|+.. +..|.+.-       ..+..+++++
T Consensus       551 i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-------a~~~~i~~v~  620 (765)
T 1ewq_A          551 LQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-------AEEAHLPLFD  620 (765)
T ss_dssp             EEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-------SSEEEECCCS
T ss_pred             EEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-------hhccceeeHH
Confidence            6677765444   456789999999   99999999999999999999999864 56675421       1234577777


Q ss_pred             eCCCCCCCCCHHHHHhhcc
Q psy16345         98 QQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        98 Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |   +++.+++.||+..+.
T Consensus       621 ~---i~~~~~~~d~l~~g~  636 (765)
T 1ewq_A          621 G---IYTRIGASDDLAGGK  636 (765)
T ss_dssp             E---EEEECCC------CC
T ss_pred             H---hhccCCHHHHHHhcc
Confidence            6   566678888887654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.29  E-value=1.6e-13  Score=95.71  Aligned_cols=57  Identities=23%  Similarity=0.332  Sum_probs=37.1

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC-----CCCccEEEE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV-----KLDSGVIRL   80 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~-----~~~~G~i~~   80 (121)
                      +++++|+++.|+ ..++++  |.+.+|..++|+|+||||||||++.|+|..     .|+.|.+.+
T Consensus         3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~   64 (210)
T 1pui_A            3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL   64 (210)
T ss_dssp             --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred             chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence            478999999997 467877  899999999999999999999999999987     677776643

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.28  E-value=2.9e-14  Score=102.93  Aligned_cols=69  Identities=17%  Similarity=0.272  Sum_probs=53.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHH---cCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLA---GRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEV  114 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~---gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~  114 (121)
                      ++++++|+|+||||||||+++|+   |+..++.|++.+++.+........+.+++|+..+++..++.+++..
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~   97 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMS   97 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            47999999999999999999999   9999999998876644322233345556777777777788888865

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.26  E-value=3.3e-12  Score=106.73  Aligned_cols=46  Identities=28%  Similarity=0.341  Sum_probs=40.9

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHH-HHcC
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNC-LAGR   70 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~-l~gl   70 (121)
                      ..++++++++     ..|++|||+|++|+++||+|+||||||||+++ |+|+
T Consensus       501 ~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~  547 (842)
T 2vf7_A          501 GWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDA  547 (842)
T ss_dssp             CEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHH
T ss_pred             ceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHH
Confidence            3599999986     26999999999999999999999999999996 6654

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.26  E-value=7.8e-13  Score=112.38  Aligned_cols=51  Identities=25%  Similarity=0.289  Sum_probs=42.4

Q ss_pred             EEEEee-----eEEEc-CCcceEEeeEEEEeC-------CeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         21 ELVFSG-----LSVTL-DKRPILKDVSGVVKP-------GELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        21 ~i~~~~-----l~~~~-~~~~~l~~vsl~i~~-------G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      +|++++     +++.| +++.+++|++|++.+       |++++|+||||||||||||++ |++.
T Consensus       750 ~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~  813 (1022)
T 2o8b_B          750 FLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA  813 (1022)
T ss_dssp             CEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred             eEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence            489999     99998 668899999999987       999999999999999999999 8865

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.24  E-value=1.1e-13  Score=97.11  Aligned_cols=76  Identities=20%  Similarity=0.166  Sum_probs=51.1

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEEeeCCCCCCCCCHHHHH
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYVLQQDIFFPELTLRQTL  112 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v~Q~~~l~~~ltv~e~l  112 (121)
                      ++.+..+..++|++++|+|+||||||||+++|++.+    |.+.+++.++..   ..+...++++|+...++.+++.+++
T Consensus        18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   93 (200)
T 4eun_A           18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEW   93 (200)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence            333334566899999999999999999999999976    888998877642   1223467888876666666777776


Q ss_pred             hhc
Q psy16345        113 EVS  115 (121)
Q Consensus       113 ~~~  115 (121)
                      ...
T Consensus        94 ~~~   96 (200)
T 4eun_A           94 MDA   96 (200)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.23  E-value=3.6e-14  Score=99.58  Aligned_cols=61  Identities=20%  Similarity=0.221  Sum_probs=46.2

Q ss_pred             eeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEE--EECCEeCC
Q psy16345         25 SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI--RLNKERLN   86 (121)
Q Consensus        25 ~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i--~~~g~~~~   86 (121)
                      +|+++.++.....+..++..++|++++|+|+|||||||++++|++.+. ..|.+  ++++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~   65 (200)
T 3uie_A            3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR   65 (200)
T ss_dssp             -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred             CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence            466777777667778888889999999999999999999999999887 66877  88776553

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.22  E-value=1.2e-12  Score=100.06  Aligned_cols=74  Identities=23%  Similarity=0.332  Sum_probs=53.2

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHcCCCCC-ccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD-SGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~-~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      ...+|++++|+|||||||||||++|+|+++++ .|.|...+.++........+++.|.......++..+.+...+
T Consensus       119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL  193 (356)
T 3jvv_A          119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSAL  193 (356)
T ss_dssp             HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHT
T ss_pred             HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHh
Confidence            66889999999999999999999999999886 577765554443233344567777654444457777665544

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.21  E-value=3.8e-13  Score=98.40  Aligned_cols=51  Identities=31%  Similarity=0.437  Sum_probs=36.1

Q ss_pred             EEEEeee-EEEc-CCcceEEeeEEEEeC---CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         21 ELVFSGL-SVTL-DKRPILKDVSGVVKP---GELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        21 ~i~~~~l-~~~~-~~~~~l~~vsl~i~~---G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++++|+ ++.| ++.++|+++||++.+   |++++|+|++||||||+.++|++.+
T Consensus        17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            5899999 9999 778899999999999   9999999999999999999998844

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=99.19  E-value=9.5e-12  Score=85.43  Aligned_cols=39  Identities=23%  Similarity=0.249  Sum_probs=34.7

Q ss_pred             EeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccE
Q psy16345         38 KDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV   77 (121)
Q Consensus        38 ~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~   77 (121)
                      +++++++.+| +++|+||||||||||+++|.+++.+..|.
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~   56 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK   56 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence            6889999998 99999999999999999999987766553

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.19  E-value=3.4e-13  Score=93.36  Aligned_cols=64  Identities=17%  Similarity=0.088  Sum_probs=45.8

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      |++++|+||||||||||+++|++   +..|.+.+++.++...  ...++++|.....+.+++++++.+.
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~   65 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKNITDL   65 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT--CCTTCCCGGGCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh--hccccccCccchhHHHHHHHHHHHH
Confidence            68999999999999999999997   5678899887654221  2345666654333445777776653

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.17  E-value=6.8e-12  Score=87.32  Aligned_cols=35  Identities=26%  Similarity=0.282  Sum_probs=29.4

Q ss_pred             EEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc
Q psy16345         42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG   76 (121)
Q Consensus        42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G   76 (121)
                      +++++|++++|+|+|||||||++++|++++.|+.|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~   35 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK   35 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence            36789999999999999999999999999866555

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.17  E-value=7.6e-12  Score=105.50  Aligned_cols=44  Identities=39%  Similarity=0.414  Sum_probs=38.8

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      ..+++++++.     ..|++|||+|++|+++||+|+||||||||+++|+
T Consensus       628 ~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          628 RWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             CEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             eEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            3588888863     4699999999999999999999999999999853

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.17  E-value=4e-12  Score=88.41  Aligned_cols=47  Identities=21%  Similarity=0.285  Sum_probs=33.5

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC---Ch-hhcccEEEEeeCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL---NK-RWKRKICYVLQQD  100 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~---~~-~~~~~i~~v~Q~~  100 (121)
                      .++|+||||||||||+|+|+|++.     +.++|...   .. ..+++++|++|+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~   52 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT   52 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC
Confidence            689999999999999999999875     33444332   11 3456799999975

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.16  E-value=4.6e-14  Score=104.16  Aligned_cols=52  Identities=29%  Similarity=0.477  Sum_probs=45.4

Q ss_pred             cCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC
Q psy16345         31 LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN   86 (121)
Q Consensus        31 ~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~   86 (121)
                      ++...+++++++.+++|  ++|+||||||||||+|+|++...+  +.+.++|.++.
T Consensus        30 ~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~   81 (274)
T 2x8a_A           30 VRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELL   81 (274)
T ss_dssp             HHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTC
T ss_pred             hhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHH
Confidence            45567899999999999  999999999999999999998876  78999887653

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.16  E-value=2e-12  Score=94.00  Aligned_cols=56  Identities=29%  Similarity=0.351  Sum_probs=48.3

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHH---cCCCCCccEEE--------ECCEeCC-----hhhcccEEEEeeCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLA---GRVKLDSGVIR--------LNKERLN-----KRWKRKICYVLQQD  100 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~---gl~~~~~G~i~--------~~g~~~~-----~~~~~~i~~v~Q~~  100 (121)
                      .+|++++|+|||||||||++|+|+   |+..++.|.++        .+|.++.     ..+++.+++++|..
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   96 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ   96 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence            789999999999999999999999   99999999998        7887763     24567789999753

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.14  E-value=7.5e-12  Score=88.20  Aligned_cols=43  Identities=30%  Similarity=0.427  Sum_probs=37.3

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHHcCCCC---CccEEEECCEeCC
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLAGRVKL---DSGVIRLNKERLN   86 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~~---~~G~i~~~g~~~~   86 (121)
                      .++|++++|+||||||||||+++|+|+++|   ..|.|.++|..+.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~   64 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLD   64 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCC
Confidence            478999999999999999999999999875   4788888776654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.13  E-value=2e-12  Score=95.41  Aligned_cols=51  Identities=24%  Similarity=0.208  Sum_probs=44.5

Q ss_pred             ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc-EEEECCEeC
Q psy16345         35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG-VIRLNKERL   85 (121)
Q Consensus        35 ~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G-~i~~~g~~~   85 (121)
                      ++|+++++.+++|++++|+||||||||||+++|++...+.+| .+.+.+.+.
T Consensus        23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~   74 (296)
T 1cr0_A           23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE   74 (296)
T ss_dssp             TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred             HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence            579999999999999999999999999999999999988877 676544333

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.13  E-value=2.6e-14  Score=107.78  Aligned_cols=91  Identities=18%  Similarity=0.285  Sum_probs=69.0

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCC-------eEEEEECCCCchHHHHHHHHHcCC----CCCccEEEECCEeCCh---
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPG-------ELLAVMGPSGCGKTTLLNCLAGRV----KLDSGVIRLNKERLNK---   87 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G-------~~~~liG~nGsGKSTLl~~l~gl~----~~~~G~i~~~g~~~~~---   87 (121)
                      ++.++++..|++..+++++++.+.+|       +.++|+||||+|||||+++|++.+    .+.+|.+...+.++..   
T Consensus        19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~   98 (334)
T 1in4_A           19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT   98 (334)
T ss_dssp             TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred             cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence            55677777888888999999999876       899999999999999999999987    5556655544443321   


Q ss_pred             h-hcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345         88 R-WKRKICYVLQQDIFFPELTLRQTLEV  114 (121)
Q Consensus        88 ~-~~~~i~~v~Q~~~l~~~ltv~e~l~~  114 (121)
                      . .+..+.+++|...+.+  ++.|++..
T Consensus        99 ~~~~~~v~~iDE~~~l~~--~~~e~L~~  124 (334)
T 1in4_A           99 SLERGDVLFIDEIHRLNK--AVEELLYS  124 (334)
T ss_dssp             HCCTTCEEEEETGGGCCH--HHHHHHHH
T ss_pred             HccCCCEEEEcchhhcCH--HHHHHHHH
Confidence            1 2456899998776654  67777754

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.12  E-value=1.3e-12  Score=99.40  Aligned_cols=77  Identities=25%  Similarity=0.328  Sum_probs=58.4

Q ss_pred             eEEee-EEEEeCCeEEEEECCCCchHHHHHHHHHcCC--CCCc----cE-EEECCEeCChhhcccEEEEeeCCCCCCCCC
Q psy16345         36 ILKDV-SGVVKPGELLAVMGPSGCGKTTLLNCLAGRV--KLDS----GV-IRLNKERLNKRWKRKICYVLQQDIFFPELT  107 (121)
Q Consensus        36 ~l~~v-sl~i~~G~~~~liG~nGsGKSTLl~~l~gl~--~~~~----G~-i~~~g~~~~~~~~~~i~~v~Q~~~l~~~lt  107 (121)
                      .|+.+ .+.+++|++++|+||||||||||+++|++..  +|+.    |. +++++.+..  .++++++++|...+++. +
T Consensus       119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~i~~i~q~~~~~~~-~  195 (349)
T 1pzn_A          119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-E  195 (349)
T ss_dssp             HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHHHHHHHHTTTCCHH-H
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHHHHHHHHHcCCCHH-H
Confidence            34444 5799999999999999999999999999987  5665    67 888876541  23457778887776655 6


Q ss_pred             HHHHHhhc
Q psy16345        108 LRQTLEVS  115 (121)
Q Consensus       108 v~e~l~~~  115 (121)
                      +.+|+.+.
T Consensus       196 v~~ni~~~  203 (349)
T 1pzn_A          196 VLKHIYVA  203 (349)
T ss_dssp             HGGGEEEE
T ss_pred             HhhCEEEE
Confidence            77776654

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.12  E-value=2.3e-12  Score=89.36  Aligned_cols=56  Identities=21%  Similarity=0.325  Sum_probs=41.0

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCCCCC---ccEEEECCEeCC-------hhhc-ccEE----EEeeCCCCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRVKLD---SGVIRLNKERLN-------KRWK-RKIC----YVLQQDIFF  103 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~-------~~~~-~~i~----~v~Q~~~l~  103 (121)
                      ++++|+|+||||||||+++|+|+++|.   .|.|.+++.++.       ..++ +.++    ++.|++.+|
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~   73 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF   73 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE
Confidence            589999999999999999999999987   899999987732       2344 3456    788876544

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=99.10  E-value=7.9e-12  Score=94.28  Aligned_cols=80  Identities=15%  Similarity=0.116  Sum_probs=64.1

Q ss_pred             EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hh-----cccEEEE-eeCCCC
Q psy16345         37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RW-----KRKICYV-LQQDIF  102 (121)
Q Consensus        37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~-----~~~i~~v-~Q~~~l  102 (121)
                      +++++|++.++++++|+|+||+||||++..|++.+.+..|++.+.+.+..+        .+     +..+.++ +|....
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~  174 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA  174 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence            368899999999999999999999999999999998888999988776632        23     5578999 777666


Q ss_pred             CCCCCHHHHHhhcc
Q psy16345        103 FPELTLRQTLEVSI  116 (121)
Q Consensus       103 ~~~ltv~e~l~~~~  116 (121)
                      .|..++++++....
T Consensus       175 ~p~~~~~~~l~~~~  188 (320)
T 1zu4_A          175 DPASVVFDAIKKAK  188 (320)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            66556778876543

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.10  E-value=1e-11  Score=93.15  Aligned_cols=32  Identities=19%  Similarity=0.344  Sum_probs=28.8

Q ss_pred             eeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         39 DVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        39 ~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ++++++.+| +++|+|+||||||||+++|..++
T Consensus        17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll   48 (322)
T 1e69_A           17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF   48 (322)
T ss_dssp             CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence            578888898 99999999999999999998553

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.09  E-value=1.2e-11  Score=86.93  Aligned_cols=28  Identities=36%  Similarity=0.469  Sum_probs=23.8

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      ++|++++|+||||||||||+++|+|+++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5799999999999999999999999875

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.09  E-value=6.3e-13  Score=99.82  Aligned_cols=68  Identities=15%  Similarity=0.216  Sum_probs=51.7

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCC--------CCCccEEEECCEeCCh-------------------hhcccEEEE---e
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRV--------KLDSGVIRLNKERLNK-------------------RWKRKICYV---L   97 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~--------~~~~G~i~~~g~~~~~-------------------~~~~~i~~v---~   97 (121)
                      ++++|+|+||||||||+|.|.|+.        .++.|+|.++|.++..                   .+++.++++   +
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~   84 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL   84 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence            689999999999999999999987        7889999999887642                   123446666   5


Q ss_pred             eCCCCCCCCCHHHHHhhc
Q psy16345         98 QQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        98 Q~~~l~~~ltv~e~l~~~  115 (121)
                      |+..++++.++.|++.++
T Consensus        85 q~~~~~~~~~v~E~~~l~  102 (318)
T 1nij_A           85 DKGNIQFDRLVIECTGMA  102 (318)
T ss_dssp             HHTSCCCSEEEEEEETTC
T ss_pred             hcCCCCCCEEEEeCCCCC
Confidence            776655566666665543

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.09  E-value=6.7e-12  Score=95.55  Aligned_cols=77  Identities=18%  Similarity=0.257  Sum_probs=56.1

Q ss_pred             eEEeeEEEEeC--CeEEEEECCCCchHHHHHHHHHcCCCCCc----cEEEEC----CEeCC---hhhcccEEEEeeCCCC
Q psy16345         36 ILKDVSGVVKP--GELLAVMGPSGCGKTTLLNCLAGRVKLDS----GVIRLN----KERLN---KRWKRKICYVLQQDIF  102 (121)
Q Consensus        36 ~l~~vsl~i~~--G~~~~liG~nGsGKSTLl~~l~gl~~~~~----G~i~~~----g~~~~---~~~~~~i~~v~Q~~~l  102 (121)
                      ..+.|++++.+  |+.++|+|+||||||||+|+|+|+++|+.    |++.++    +.+..   ..+ +.+++++|++.+
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~  235 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYID  235 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHH
Confidence            35679999999  99999999999999999999999999998    888763    33321   122 346777776543


Q ss_pred             CCCCCHHHHHhh
Q psy16345        103 FPELTLRQTLEV  114 (121)
Q Consensus       103 ~~~ltv~e~l~~  114 (121)
                      +. .++.+|+.+
T Consensus       236 ~~-~t~~~nl~~  246 (365)
T 1lw7_A          236 YA-VRHSHKIAF  246 (365)
T ss_dssp             HH-HHHCSSEEE
T ss_pred             HH-HhccCCEEE
Confidence            32 355555544

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.98  E-value=8.1e-11  Score=81.22  Aligned_cols=36  Identities=19%  Similarity=0.206  Sum_probs=29.4

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCCC-CccEEEE
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVKL-DSGVIRL   80 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~-~~G~i~~   80 (121)
                      .+|++++|+||||||||||+++|++++++ ..|.|..
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~   39 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH   39 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence            36899999999999999999999998763 3455543

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.98  E-value=1.9e-10  Score=96.94  Aligned_cols=49  Identities=12%  Similarity=0.214  Sum_probs=41.6

Q ss_pred             EEEEeeeEEEc-------CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         21 ELVFSGLSVTL-------DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        21 ~i~~~~l~~~~-------~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .+.+++.....       +++.+++|++|++++|++++|+||||||||||||++++
T Consensus       640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred             cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence            46777765543       34689999999999999999999999999999999874

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.96  E-value=3.4e-10  Score=94.22  Aligned_cols=49  Identities=16%  Similarity=0.154  Sum_probs=41.3

Q ss_pred             EEEeeeEEEc-----CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         22 LVFSGLSVTL-----DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        22 i~~~~l~~~~-----~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +.+++.....     +++.+++|++|+ ++|++++|+||||||||||||+|+|+.
T Consensus       578 i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          578 IRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             EEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            6666654432     456799999999 999999999999999999999999964

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.95  E-value=4.5e-10  Score=94.81  Aligned_cols=56  Identities=16%  Similarity=0.112  Sum_probs=45.4

Q ss_pred             EEEEeeeEEEc-----CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHH--------HcCCCCCcc
Q psy16345         21 ELVFSGLSVTL-----DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL--------AGRVKLDSG   76 (121)
Q Consensus        21 ~i~~~~l~~~~-----~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l--------~gl~~~~~G   76 (121)
                      .+++++....+     +.+.+++|++|++.+|++++|+||||||||||||++        .|..-|.++
T Consensus       631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~  699 (934)
T 3thx_A          631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES  699 (934)
T ss_dssp             EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE
T ss_pred             ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence            47777765544     235789999999999999999999999999999999        776666544

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.95  E-value=3.1e-11  Score=84.82  Aligned_cols=51  Identities=16%  Similarity=0.120  Sum_probs=43.0

Q ss_pred             ceEEeeEE-EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345         35 PILKDVSG-VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL   85 (121)
Q Consensus        35 ~~l~~vsl-~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~   85 (121)
                      +.|+++.+ .+++|++++|+||||||||||+++|++...+..|.+.+.+.+.
T Consensus        10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~   61 (235)
T 2w0m_A           10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE   61 (235)
T ss_dssp             HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred             hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence            45777776 7999999999999999999999999988777778887765444

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.93  E-value=4.6e-10  Score=78.36  Aligned_cols=38  Identities=21%  Similarity=0.135  Sum_probs=24.5

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ..+++++||++++|++++|+|++||||||+.+.|+..+
T Consensus        12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            56899999999999999999999999999999999754

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.88  E-value=1e-09  Score=85.40  Aligned_cols=35  Identities=14%  Similarity=0.159  Sum_probs=33.2

Q ss_pred             EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      -++++|+++.|+.++|+|+|||||||||++|++..
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~  181 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH  181 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence            57999999999999999999999999999999983

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.88  E-value=1.4e-09  Score=77.13  Aligned_cols=42  Identities=19%  Similarity=0.381  Sum_probs=36.5

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHc--CCCC-----CccEEEECCEe
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAG--RVKL-----DSGVIRLNKER   84 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~g--l~~~-----~~G~i~~~g~~   84 (121)
                      -+++|++++|+||||||||||++.|++  +.++     ..|.+++++..
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            489999999999999999999999999  5554     56788888766

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.88  E-value=7.7e-10  Score=85.78  Aligned_cols=49  Identities=16%  Similarity=0.329  Sum_probs=38.8

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS   75 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~   75 (121)
                      .++++|+ +.|++..     .+++.+|++++|+|||||||||||++|++++.+.+
T Consensus         6 ~l~~~~~-~~~~~~~-----~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~   54 (430)
T 1w1w_A            6 GLELSNF-KSYRGVT-----KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS   54 (430)
T ss_dssp             EEEEESC-SSCCSEE-----EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred             EEEEeCE-EEECCce-----eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence            4788888 6775532     25567899999999999999999999999887754

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.87  E-value=2.3e-11  Score=87.70  Aligned_cols=60  Identities=20%  Similarity=0.377  Sum_probs=51.1

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL   85 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~   85 (121)
                      .+++++.+.|+...+++++++.+++|  +.|+||||+|||||+++|++...  .|.+.+++.++
T Consensus        26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~   85 (254)
T 1ixz_A           26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF   85 (254)
T ss_dssp             HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred             HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHH
Confidence            45677777787778899999999999  89999999999999999999875  68888877543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.87  E-value=6.2e-10  Score=78.46  Aligned_cols=29  Identities=31%  Similarity=0.493  Sum_probs=27.3

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVKL   73 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~   73 (121)
                      ++|++++|+||||||||||++.|++.+++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            58999999999999999999999999876

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=98.87  E-value=1.8e-09  Score=82.61  Aligned_cols=43  Identities=28%  Similarity=0.291  Sum_probs=36.1

Q ss_pred             EeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         24 FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        24 ~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      ++.++..  +...+++++|++.+| +++|+||||||||||+++|++
T Consensus         6 i~~L~l~--~~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A            6 LSALSTL--NYRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEEEE--SBTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             EeEEEEe--CccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence            4555543  334578999999999 999999999999999999997

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.86  E-value=5.6e-10  Score=79.81  Aligned_cols=41  Identities=27%  Similarity=0.199  Sum_probs=35.2

Q ss_pred             EEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345         41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL   85 (121)
Q Consensus        41 sl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~   85 (121)
                      +...++|++++|.|+||||||||+++|+++    .|+|.+.+.+.
T Consensus        14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~   54 (230)
T 2vp4_A           14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV   54 (230)
T ss_dssp             BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred             cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence            335579999999999999999999999997    68888887664

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.86  E-value=2.8e-11  Score=88.63  Aligned_cols=60  Identities=20%  Similarity=0.377  Sum_probs=50.1

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL   85 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~   85 (121)
                      .+++++.+.|+...+++++++.+++|  ++|+||||+|||||+++|++...  .|.+.+++.++
T Consensus        50 ~~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~  109 (278)
T 1iy2_A           50 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF  109 (278)
T ss_dssp             HHHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred             HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHH
Confidence            34466666677777899999999999  89999999999999999999875  68888887554

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.85  E-value=2.1e-11  Score=92.11  Aligned_cols=53  Identities=19%  Similarity=0.243  Sum_probs=42.9

Q ss_pred             eEEEcCCcceEEeeEEEEeCCe------EEEEECCCCchHHHHHHHHHcCCC--CCccEEE
Q psy16345         27 LSVTLDKRPILKDVSGVVKPGE------LLAVMGPSGCGKTTLLNCLAGRVK--LDSGVIR   79 (121)
Q Consensus        27 l~~~~~~~~~l~~vsl~i~~G~------~~~liG~nGsGKSTLl~~l~gl~~--~~~G~i~   79 (121)
                      +++.|++...+++++..+..++      ++||+||||||||||+++|.+++.  |..|.+.
T Consensus        66 l~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~  126 (321)
T 3tqc_A           66 LSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVE  126 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred             HHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEE
Confidence            4555667778888888888777      999999999999999999999876  4555543

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.84  E-value=2.5e-09  Score=90.11  Aligned_cols=31  Identities=32%  Similarity=0.528  Sum_probs=29.3

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHH
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLL   64 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl   64 (121)
                      ...|++|||+|++|++++|+|+||||||||+
T Consensus       597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred             cccccccceEEcCCcEEEEEccCCCChhhhH
Confidence            4579999999999999999999999999997

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.82  E-value=1.3e-10  Score=86.50  Aligned_cols=61  Identities=23%  Similarity=0.110  Sum_probs=51.7

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN   86 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~   86 (121)
                      +.++++++.|+...  ++++|+  +|++++++|+||+||||+++.|++++.+..|++.+.+.+..
T Consensus        77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~  137 (295)
T 1ls1_A           77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ  137 (295)
T ss_dssp             HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred             HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence            45567777786543  788888  99999999999999999999999999888899999877764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.79  E-value=4.3e-09  Score=72.72  Aligned_cols=37  Identities=22%  Similarity=0.383  Sum_probs=32.0

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCCC-----------CccEEEECCEeC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVKL-----------DSGVIRLNKERL   85 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~~-----------~~G~i~~~g~~~   85 (121)
                      .++|+|+||||||||++.++|...+           ..|.+.++|.++
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~   78 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI   78 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence            6899999999999999999998754           578899988654

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.78  E-value=6.8e-10  Score=77.77  Aligned_cols=39  Identities=26%  Similarity=0.231  Sum_probs=34.5

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECC
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNK   82 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g   82 (121)
                      ..+|++++|+|+||||||||+++|++++.+..|.+.+.+
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~   57 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH   57 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence            578999999999999999999999998877778877654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.77  E-value=3.6e-10  Score=77.53  Aligned_cols=36  Identities=25%  Similarity=0.283  Sum_probs=31.5

Q ss_pred             EEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc
Q psy16345         41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG   76 (121)
Q Consensus        41 sl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G   76 (121)
                      +|.+.+|+.++|+||||+|||||+++|++.+.+..|
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g   67 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG   67 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence            456678999999999999999999999998866556

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.76  E-value=1.1e-09  Score=74.00  Aligned_cols=44  Identities=23%  Similarity=0.480  Sum_probs=36.7

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc--EEEECCEeC
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG--VIRLNKERL   85 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G--~i~~~g~~~   85 (121)
                      +++++     +|+.++|+||||+|||||+++|++...+ .|  .+++++.++
T Consensus        30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~   75 (149)
T 2kjq_A           30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASM   75 (149)
T ss_dssp             HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTS
T ss_pred             HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHh
Confidence            45555     8999999999999999999999998876 57  777776554

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.76  E-value=1.6e-09  Score=73.67  Aligned_cols=38  Identities=24%  Similarity=0.375  Sum_probs=32.1

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN   86 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~   86 (121)
                      .+|++++|+|+|||||||++++|++.+    |.+.+++.++.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~   43 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH   43 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence            468999999999999999999999864    67777776553

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.75  E-value=6e-09  Score=72.82  Aligned_cols=31  Identities=23%  Similarity=0.252  Sum_probs=27.8

Q ss_pred             EEEeCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      -++++|.+++|+|++||||||+++.|++.+.
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3568899999999999999999999999763

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.74  E-value=1.9e-09  Score=86.59  Aligned_cols=43  Identities=30%  Similarity=0.414  Sum_probs=37.5

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc-EEE-ECCEeC
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG-VIR-LNKERL   85 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G-~i~-~~g~~~   85 (121)
                      .+.+|++++|+|+||||||||+|+|++++.+..| .+. ++|..+
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            4679999999999999999999999999988886 675 777554

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=98.74  E-value=4.8e-09  Score=83.18  Aligned_cols=68  Identities=18%  Similarity=0.229  Sum_probs=51.0

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC----------------------C----------------CCCccE
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR----------------------V----------------KLDSGV   77 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl----------------------~----------------~~~~G~   77 (121)
                      .+++++|++.+| +.+|+|+|||||||||.+|..+                      .                ....+.
T Consensus        50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~~  128 (517)
T 4ad8_A           50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA  128 (517)
T ss_dssp             TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCCE
T ss_pred             ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCcE
Confidence            577899999999 9999999999999999999654                      2                122456


Q ss_pred             EEECCEeCCh-----hhcccEEEEeeCCCCCC
Q psy16345         78 IRLNKERLNK-----RWKRKICYVLQQDIFFP  104 (121)
Q Consensus        78 i~~~g~~~~~-----~~~~~i~~v~Q~~~l~~  104 (121)
                      ++++|.++..     .....+.+++|+..+..
T Consensus       129 ~~ing~~v~~~~l~~~~~~li~i~~q~~~~~l  160 (517)
T 4ad8_A          129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL  160 (517)
T ss_dssp             EESSSSBCCHHHHHHHHTTTEEEESGGGGGTT
T ss_pred             EEECCEECCHHHHHHHhhhheEEeCCchHHhc
Confidence            7788877752     22345788888765543

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.73  E-value=1.4e-09  Score=87.72  Aligned_cols=75  Identities=12%  Similarity=0.104  Sum_probs=59.7

Q ss_pred             EeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc-cEEEECCEeCChhhcccEEEEeeC
Q psy16345         24 FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS-GVIRLNKERLNKRWKRKICYVLQQ   99 (121)
Q Consensus        24 ~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~-G~i~~~g~~~~~~~~~~i~~v~Q~   99 (121)
                      -++++.-|+...+++.+++.+.+|+.+.|+||||+|||||+++|++++++.. |.+.+.+.+.. .....++++++.
T Consensus        37 p~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~-~~~p~i~~~p~g  112 (604)
T 3k1j_A           37 EKLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED-ENMPRIKTVPAC  112 (604)
T ss_dssp             SSHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC-TTSCEEEEEETT
T ss_pred             ccccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc-ccCCcEEEEecc
Confidence            3445555788889999999999999999999999999999999999998877 77777765543 233456776653

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=98.73  E-value=7e-09  Score=79.21  Aligned_cols=32  Identities=34%  Similarity=0.629  Sum_probs=29.4

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      .++++++++.+| +++|+||||||||||+.+|+
T Consensus        13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             CccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            467889999998 88999999999999999998

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.72  E-value=3.3e-09  Score=75.05  Aligned_cols=32  Identities=22%  Similarity=0.374  Sum_probs=26.5

Q ss_pred             EEEEeCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        41 sl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      ++...+|++++|+||||||||||++.|++.++
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            34445899999999999999999999998765

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.72  E-value=4.7e-10  Score=79.13  Aligned_cols=54  Identities=26%  Similarity=0.382  Sum_probs=42.1

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCC---CCCccEEEE--------CCEeCCh-----hhcccEEEEeeCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRV---KLDSGVIRL--------NKERLNK-----RWKRKICYVLQQD  100 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~---~~~~G~i~~--------~g~~~~~-----~~~~~i~~v~Q~~  100 (121)
                      +.+++|+|++||||||++++|++.+   .++.|++..        .|.++..     .+++.+++++|++
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   74 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST   74 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence            5689999999999999999998765   567788776        5665541     3566788888863

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.70  E-value=1.8e-09  Score=80.92  Aligned_cols=48  Identities=23%  Similarity=0.195  Sum_probs=41.8

Q ss_pred             eeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC
Q psy16345         39 DVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN   86 (121)
Q Consensus        39 ~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~   86 (121)
                      .+++...++++++|+|+|||||||+++.|++.+.+..|++.+.+.+..
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~  143 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF  143 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence            356667889999999999999999999999999888889998877654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.70  E-value=8.3e-09  Score=79.81  Aligned_cols=68  Identities=12%  Similarity=0.153  Sum_probs=48.7

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHc------------CCCCCccEEEECCEeCCh-----hhccc---EEEEeeCCCC
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAG------------RVKLDSGVIRLNKERLNK-----RWKRK---ICYVLQQDIF  102 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~g------------l~~~~~G~i~~~g~~~~~-----~~~~~---i~~v~Q~~~l  102 (121)
                      .+++|..+||+|+||+|||||+++|+|            ...|..|.+.+.|..+..     ..++.   ..++.+.+.+
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            457899999999999999999999999            556889999998744321     01112   2366676666


Q ss_pred             CCCCCHHH
Q psy16345        103 FPELTLRQ  110 (121)
Q Consensus       103 ~~~ltv~e  110 (121)
                      ....+..+
T Consensus        96 ~~~~s~~e  103 (392)
T 1ni3_A           96 TKGASTGV  103 (392)
T ss_dssp             CCCCCSSS
T ss_pred             ccCCcHHH
Confidence            66555433

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.68  E-value=1.5e-09  Score=83.55  Aligned_cols=44  Identities=25%  Similarity=0.187  Sum_probs=39.1

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEE
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL   80 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~   80 (121)
                      ..+++++++.+++|++++|+||||||||||+++|++..   .|.+..
T Consensus       156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~  199 (377)
T 1svm_A          156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN  199 (377)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred             HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence            36789999999999999999999999999999999853   577665

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.67  E-value=7.2e-11  Score=89.35  Aligned_cols=63  Identities=14%  Similarity=0.088  Sum_probs=51.4

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER   84 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~   84 (121)
                      ++.+++.+.|+.+.+++++++.+.++.+++|+|++|+|||||++.|++.+.+..+++.+-+.+
T Consensus        31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d   93 (341)
T 2p67_A           31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD   93 (341)
T ss_dssp             HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence            455666666766778999999999999999999999999999999999877666666654443

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.66  E-value=6.5e-09  Score=77.30  Aligned_cols=58  Identities=17%  Similarity=0.187  Sum_probs=45.5

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVS  115 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~  115 (121)
                      .++.++||+|++|||||||++.|.+++.+. |          . -++.+.+|+||..+++. +.++|+.++
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g----------~-~~~~~~iv~~D~f~~~~-~~~~~l~~~   86 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y----------G-GEKSIGYASIDDFYLTH-EDQLKLNEQ   86 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H----------G-GGSCEEEEEGGGGBCCH-HHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C----------C-CCceEEEeccccccCCh-HHHHHHhcc
Confidence            578899999999999999999999988653 2          0 13345666999887765 888888765

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.65  E-value=1.5e-08  Score=70.02  Aligned_cols=37  Identities=22%  Similarity=0.391  Sum_probs=30.4

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCC-----C------CccEEEECCEeC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVK-----L------DSGVIRLNKERL   85 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~-----~------~~G~i~~~g~~~   85 (121)
                      .++|+|+||||||||++.|+|...     |      ..|.+.++|.++
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~   54 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI   54 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence            579999999999999999999742     3      257888988654

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.64  E-value=1.4e-09  Score=74.50  Aligned_cols=39  Identities=28%  Similarity=0.338  Sum_probs=30.9

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCCCCcc--EEEECCEe
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG--VIRLNKER   84 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G--~i~~~g~~   84 (121)
                      .+|++++|+|++||||||++++|++.+.+ .|  .+.+++..
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~   43 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDN   43 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChH
Confidence            47899999999999999999999987654 45  55555443

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.61  E-value=1.3e-08  Score=68.85  Aligned_cols=28  Identities=29%  Similarity=0.501  Sum_probs=24.9

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCCCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRVKL   73 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~   73 (121)
                      .|++++|+|+|||||||++++|++.+.+
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~   30 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM   30 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4678999999999999999999997653

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.60  E-value=4.3e-10  Score=89.89  Aligned_cols=58  Identities=21%  Similarity=0.308  Sum_probs=47.6

Q ss_pred             eeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCE
Q psy16345         25 SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE   83 (121)
Q Consensus        25 ~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~   83 (121)
                      +++...|....++.++++++ +|+.++|+||||+|||||+|+|++.+.+..|.+.+.+.
T Consensus        87 ~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~  144 (543)
T 3m6a_A           87 EKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV  144 (543)
T ss_dssp             HHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred             HHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence            44555555556778888887 89999999999999999999999998888888887764

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.59  E-value=9.8e-09  Score=76.74  Aligned_cols=53  Identities=19%  Similarity=0.177  Sum_probs=32.6

Q ss_pred             EEEEECCCCchHHHHHHHHHc-CCCCCccEEEECCEeCCh--hhcccEEEEeeCCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG-RVKLDSGVIRLNKERLNK--RWKRKICYVLQQDI  101 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g-l~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~~~  101 (121)
                      .+.|.||||+|||||+++|++ +..+..|.+.++|.+...  ..+..+++++|...
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~   93 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH   93 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence            389999999999999999999 888999999998876542  22445777777653

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.58  E-value=3.4e-08  Score=76.52  Aligned_cols=43  Identities=26%  Similarity=0.442  Sum_probs=34.9

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHH--HcCCCCCcc-----EEEECCEeC
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCL--AGRVKLDSG-----VIRLNKERL   85 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l--~gl~~~~~G-----~i~~~g~~~   85 (121)
                      -|++|+++.|+||||||||||++.|  .++.+++.|     .+++++...
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~  223 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT  223 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence            6899999999999999999999954  567665443     788887653

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.57  E-value=2e-08  Score=70.08  Aligned_cols=45  Identities=33%  Similarity=0.364  Sum_probs=34.2

Q ss_pred             EEeeEE-EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCE
Q psy16345         37 LKDVSG-VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE   83 (121)
Q Consensus        37 l~~vsl-~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~   83 (121)
                      |+.+.. .+++|++++|+|+||||||||++.|++  ....+.++++..
T Consensus         9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~   54 (220)
T 2cvh_A            9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTE   54 (220)
T ss_dssp             HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESS
T ss_pred             HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECC
Confidence            444443 589999999999999999999999999  333445555544

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.52  E-value=3e-08  Score=72.48  Aligned_cols=30  Identities=30%  Similarity=0.472  Sum_probs=27.2

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      .+++|++++|+||||||||||++.+++...
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            478999999999999999999999998543

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.51  E-value=5.2e-08  Score=65.62  Aligned_cols=29  Identities=28%  Similarity=0.504  Sum_probs=23.7

Q ss_pred             eeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345         39 DVSGVVKPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        39 ~vsl~i~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      +.++++.+ .+.+|+|||||||||++.+|.
T Consensus        16 ~~~i~f~~-g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEcCC-CeEEEECCCCCCHHHHHHHHH
Confidence            34455555 499999999999999999986

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.49  E-value=1e-08  Score=78.37  Aligned_cols=72  Identities=19%  Similarity=0.216  Sum_probs=51.2

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEE-EECCEeCC-hhhcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI-RLNKERLN-KRWKRKICYVLQQDIFFPELTLRQTLEV  114 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i-~~~g~~~~-~~~~~~i~~v~Q~~~l~~~ltv~e~l~~  114 (121)
                      -+++|+++.|.||+|||||||+..++....+..|.+ ++++.... ..+.+++++.+|+..+....++.+.+..
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~  130 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEI  130 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHH
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHH
Confidence            478999999999999999999999998776666765 55554432 2344556666666554445577666543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.49  E-value=3.8e-08  Score=78.15  Aligned_cols=41  Identities=20%  Similarity=0.265  Sum_probs=34.5

Q ss_pred             EEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccE--EEECC
Q psy16345         41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV--IRLNK   82 (121)
Q Consensus        41 sl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~--i~~~g   82 (121)
                      +..+++|++++|+|+||||||||+++++|+..+. |.  +++..
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~  317 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAY  317 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEES
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEE
Confidence            3489999999999999999999999999988775 54  44443

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.49  E-value=1.9e-08  Score=74.94  Aligned_cols=38  Identities=29%  Similarity=0.380  Sum_probs=32.2

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCCCCcc-EEEECC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG-VIRLNK   82 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G-~i~~~g   82 (121)
                      .+|++++|+|+||+||||+++.|++.+.+..| +|.+-+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~  141 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT  141 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            57999999999999999999999999887677 554433

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.47  E-value=1.5e-07  Score=73.08  Aligned_cols=38  Identities=18%  Similarity=0.357  Sum_probs=32.2

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCCC------------CCccEEEECCEeC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRVK------------LDSGVIRLNKERL   85 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~~------------~~~G~i~~~g~~~   85 (121)
                      -.++|+|+||+|||||++.|+|...            +..|.+.++|.++
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~  230 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY  230 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence            3799999999999999999999753            5678999998764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.45  E-value=7.2e-08  Score=69.11  Aligned_cols=45  Identities=22%  Similarity=0.248  Sum_probs=31.2

Q ss_pred             ceEEeeEEEEe---CCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEE
Q psy16345         35 PILKDVSGVVK---PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL   80 (121)
Q Consensus        35 ~~l~~vsl~i~---~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~   80 (121)
                      .-|.++++.+.   +|.+++|.|++||||||+++.|+..+.+ .+.+..
T Consensus        11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~   58 (229)
T 4eaq_A           11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM   58 (229)
T ss_dssp             ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred             cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence            34777777776   9999999999999999999999998776 556543

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.45  E-value=1.7e-08  Score=78.28  Aligned_cols=51  Identities=24%  Similarity=0.423  Sum_probs=45.7

Q ss_pred             EEEEeeeEEEcCC-cceEE--------------eeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         21 ELVFSGLSVTLDK-RPILK--------------DVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        21 ~i~~~~l~~~~~~-~~~l~--------------~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+.++|+++.|.. +..++              |+.+.+.+|+.++|+|++|+|||||++.|++..
T Consensus       133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            3678999999965 66888              899999999999999999999999999998864

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.42  E-value=1.3e-08  Score=79.51  Aligned_cols=59  Identities=22%  Similarity=0.102  Sum_probs=48.7

Q ss_pred             EeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC
Q psy16345         24 FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN   86 (121)
Q Consensus        24 ~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~   86 (121)
                      .+++++.|+...  ++++|+  ++++++++|+||+||||++..|++.+.+..+++.+.+.+..
T Consensus        79 ~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~  137 (425)
T 2ffh_A           79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ  137 (425)
T ss_dssp             HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred             HHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence            345666676543  678887  89999999999999999999999999888889988776654

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.42  E-value=4.6e-08  Score=74.25  Aligned_cols=39  Identities=15%  Similarity=0.256  Sum_probs=32.7

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCE
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE   83 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~   83 (121)
                      +++.+++|+|++|||||||++.|++.+.+..|+|.+.+.
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~  110 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAV  110 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEee
Confidence            457899999999999999999999987777777765543

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.40  E-value=1.9e-08  Score=76.73  Aligned_cols=51  Identities=27%  Similarity=0.341  Sum_probs=38.3

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccE
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV   77 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~   77 (121)
                      .+.+.+++..|+++.++++++|.|      +|+|++|+|||||++.|.+...+..+.
T Consensus        17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~   67 (361)
T 2qag_A           17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV   67 (361)
T ss_dssp             ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred             eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence            488899999998888999999987      999999999999999998875544443

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.35  E-value=8.7e-08  Score=67.26  Aligned_cols=43  Identities=26%  Similarity=0.243  Sum_probs=36.1

Q ss_pred             EEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc--EEEECCEe
Q psy16345         42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG--VIRLNKER   84 (121)
Q Consensus        42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G--~i~~~g~~   84 (121)
                      +.+.+|.++.|+|++||||||+.+.|++.+.|..|  .+.+++..
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~   64 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN   64 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence            34578999999999999999999999998876677  77777543

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=98.33  E-value=3.5e-07  Score=68.85  Aligned_cols=30  Identities=27%  Similarity=0.489  Sum_probs=24.3

Q ss_pred             EeeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345         38 KDVSGVVKPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        38 ~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      .+..+++.+ .+++|+|||||||||++.+|+
T Consensus        15 ~~~~i~f~~-~~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred             cCeEEcCCC-CeEEEECCCCCCHHHHHHHHH
Confidence            345566655 589999999999999999874

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.32  E-value=3.2e-07  Score=63.80  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +++|+|+|||||||+.++|+++
T Consensus         4 ~i~l~G~~GsGKST~~~~La~l   25 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDL   25 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
Confidence            6899999999999999999984

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.31  E-value=2.8e-07  Score=65.17  Aligned_cols=47  Identities=19%  Similarity=0.310  Sum_probs=32.7

Q ss_pred             EEee-EEEEeCCeEEEEECCCCchHHHHHHHH-HcCCCCCccEEEECCE
Q psy16345         37 LKDV-SGVVKPGELLAVMGPSGCGKTTLLNCL-AGRVKLDSGVIRLNKE   83 (121)
Q Consensus        37 l~~v-sl~i~~G~~~~liG~nGsGKSTLl~~l-~gl~~~~~G~i~~~g~   83 (121)
                      |+.+ ..-+++|+++.|+|+||||||||+..+ ....+...+.+++...
T Consensus        12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e   60 (247)
T 2dr3_A           12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE   60 (247)
T ss_dssp             HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            4444 456899999999999999999996555 4444444445555543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=98.31  E-value=6.9e-07  Score=60.48  Aligned_cols=27  Identities=41%  Similarity=0.663  Sum_probs=23.3

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ++|..++|+|++|+|||||++.|++..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999999864

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=98.29  E-value=6.5e-07  Score=61.46  Aligned_cols=49  Identities=27%  Similarity=0.312  Sum_probs=28.2

Q ss_pred             ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC--------CCCCccEEEECCEe
Q psy16345         35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR--------VKLDSGVIRLNKER   84 (121)
Q Consensus        35 ~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl--------~~~~~G~i~~~g~~   84 (121)
                      .+++++++..++. .++|+|++|+|||||++.+.+-        ..+..+.+.+++..
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~   68 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK   68 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEE
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEE
Confidence            4788999988877 6789999999999999999872        22345667777643

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=98.29  E-value=3.6e-07  Score=64.25  Aligned_cols=29  Identities=28%  Similarity=0.504  Sum_probs=23.8

Q ss_pred             eeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345         39 DVSGVVKPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        39 ~vsl~i~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      +.++++.+ .+.+|+|||||||||++.+|.
T Consensus        16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence            34556655 599999999999999999885

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.29  E-value=1.2e-08  Score=76.06  Aligned_cols=59  Identities=22%  Similarity=0.131  Sum_probs=46.8

Q ss_pred             EeeeEEEcCCcceEEe-eEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345         24 FSGLSVTLDKRPILKD-VSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL   85 (121)
Q Consensus        24 ~~~l~~~~~~~~~l~~-vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~   85 (121)
                      .+++...|+...  ++ ++++.+ +++++++|++|+||||++..|++.+.+..+++.+.+.+.
T Consensus        77 ~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~  136 (297)
T 1j8m_F           77 YDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV  136 (297)
T ss_dssp             HHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             HHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            345666666543  56 788766 999999999999999999999998887778888766654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.28  E-value=3.4e-07  Score=69.26  Aligned_cols=42  Identities=24%  Similarity=0.448  Sum_probs=31.8

Q ss_pred             cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc--CCCCCccEE
Q psy16345         34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG--RVKLDSGVI   78 (121)
Q Consensus        34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g--l~~~~~G~i   78 (121)
                      ..+|++++++++   .++|+|++|||||||++.|+|  +++...|.+
T Consensus        24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v   67 (360)
T 3t34_A           24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV   67 (360)
T ss_dssp             SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred             ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence            358999999998   899999999999999999999  555555544

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.27  E-value=9.9e-08  Score=66.10  Aligned_cols=55  Identities=24%  Similarity=0.268  Sum_probs=38.7

Q ss_pred             EEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC--------CCCCccEEEECCEe
Q psy16345         29 VTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR--------VKLDSGVIRLNKER   84 (121)
Q Consensus        29 ~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl--------~~~~~G~i~~~g~~   84 (121)
                      +.|++ ..+++++++..++. .++|+|++|+|||||++.+.+-        ..+..+.+.+++..
T Consensus         7 ~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~   70 (198)
T 1f6b_A            7 WIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT   70 (198)
T ss_dssp             ------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred             HHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence            34544 46888899887776 4789999999999999999872        23345777777644

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.27  E-value=1e-07  Score=75.71  Aligned_cols=60  Identities=20%  Similarity=0.377  Sum_probs=48.3

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL   85 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~   85 (121)
                      .+++++...|....+++++++.+++|  +.|+||||+|||||+|+|++...  .+.+.+++.++
T Consensus        41 ~~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~  100 (499)
T 2dhr_A           41 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF  100 (499)
T ss_dssp             HHHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred             HHHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHH
Confidence            34455555566667889999999998  89999999999999999999764  67888887654

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.26  E-value=4.1e-07  Score=62.54  Aligned_cols=32  Identities=25%  Similarity=0.312  Sum_probs=26.4

Q ss_pred             eeEEEEeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         39 DVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        39 ~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ++|+...++..++|+|++||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57888889999999999999999999999875

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.26  E-value=2.7e-07  Score=63.27  Aligned_cols=36  Identities=25%  Similarity=0.377  Sum_probs=30.2

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEE
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI   78 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i   78 (121)
                      ...+|.++.|+|++||||||+.+.|+..+....+.+
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~   44 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV   44 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            446799999999999999999999998776555555

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.25  E-value=9.3e-07  Score=67.52  Aligned_cols=39  Identities=26%  Similarity=0.459  Sum_probs=30.6

Q ss_pred             CeE-EEEECCCCchHHHHHHHHHcCCC-----------CCccEEEECCEeC
Q psy16345         47 GEL-LAVMGPSGCGKTTLLNCLAGRVK-----------LDSGVIRLNKERL   85 (121)
Q Consensus        47 G~~-~~liG~nGsGKSTLl~~l~gl~~-----------~~~G~i~~~g~~~   85 (121)
                      |-. ++|+|++|||||||++.|+|...           +..|.+.++|.++
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v  228 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI  228 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence            444 99999999999999999999765           5668888887653

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.23  E-value=4.6e-07  Score=63.18  Aligned_cols=29  Identities=34%  Similarity=0.439  Sum_probs=25.6

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ...+|.+++|+||||||||||.+.|+..+
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            45789999999999999999999998765

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.20  E-value=5.7e-07  Score=62.32  Aligned_cols=22  Identities=27%  Similarity=0.560  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +++|+|+|||||||++++|+++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~~   24 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFREL   24 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHHHC
Confidence            6899999999999999999983

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.20  E-value=7.3e-08  Score=78.75  Aligned_cols=44  Identities=23%  Similarity=0.210  Sum_probs=33.1

Q ss_pred             EEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC--CccEEEECCEeC
Q psy16345         41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL--DSGVIRLNKERL   85 (121)
Q Consensus        41 sl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~   85 (121)
                      ++++++++.++|+|++|+|||||++.|++...+  ..|+| .+|..+
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~   48 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTT   48 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCS
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccc
Confidence            466789999999999999999999999976543  56766 455443

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.17  E-value=2.4e-08  Score=74.84  Aligned_cols=52  Identities=27%  Similarity=0.407  Sum_probs=42.9

Q ss_pred             eeeEEEcCCcceEEeeEEEEeCCeE--EEEECCCCchHHHHHHHHHcCCCCCcc
Q psy16345         25 SGLSVTLDKRPILKDVSGVVKPGEL--LAVMGPSGCGKTTLLNCLAGRVKLDSG   76 (121)
Q Consensus        25 ~~l~~~~~~~~~l~~vsl~i~~G~~--~~liG~nGsGKSTLl~~l~gl~~~~~G   76 (121)
                      ++++..++...+++.++..++.|++  +.|.||+|+||||+++++++.+.+..+
T Consensus        22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~   75 (340)
T 1sxj_C           22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY   75 (340)
T ss_dssp             SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred             CcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence            4455556777889999999999998  999999999999999999997654443

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.15  E-value=3.1e-06  Score=56.58  Aligned_cols=24  Identities=33%  Similarity=0.595  Sum_probs=21.5

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      -.++|+|++|+|||||++.+++..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999854

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.14  E-value=1.8e-06  Score=58.37  Aligned_cols=22  Identities=36%  Similarity=0.723  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|++|+|||||++.+++.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999984

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.10  E-value=1.6e-06  Score=67.07  Aligned_cols=40  Identities=15%  Similarity=0.317  Sum_probs=32.2

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHcC-----------CCCCccEEEECC
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAGR-----------VKLDSGVIRLNK   82 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl-----------~~~~~G~i~~~g   82 (121)
                      .+..+..++|+|+||+|||||++.|+|.           ..|..|.+.+.+
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~   68 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD   68 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence            3467788999999999999999999997           557778777655

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=98.09  E-value=3.3e-06  Score=64.24  Aligned_cols=31  Identities=16%  Similarity=0.387  Sum_probs=26.7

Q ss_pred             EEeeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345         37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      +++..+++.+ .++.|+|+|||||||++.+|+
T Consensus        16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred             ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence            4667778777 599999999999999999886

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.09  E-value=3e-07  Score=69.89  Aligned_cols=38  Identities=21%  Similarity=0.422  Sum_probs=29.2

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEE
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL   80 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~   80 (121)
                      -+++|+++.|.|++|+|||||+..++.......|.+.|
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vly   94 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAF   94 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence            57899999999999999999988887543333344443

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.07  E-value=1.2e-06  Score=65.10  Aligned_cols=25  Identities=40%  Similarity=0.616  Sum_probs=22.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ++.+++|+|++|+|||||++.|.|.
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3458999999999999999999986

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=98.06  E-value=2.1e-06  Score=58.47  Aligned_cols=25  Identities=36%  Similarity=0.586  Sum_probs=22.2

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .+|.+++|+|++||||||+.+.|+.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999984

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.04  E-value=1.8e-06  Score=59.79  Aligned_cols=25  Identities=32%  Similarity=0.470  Sum_probs=22.3

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ..+++|+|++||||||+.+.|++.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=98.04  E-value=2.6e-06  Score=57.96  Aligned_cols=23  Identities=43%  Similarity=0.598  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|++|+|||||++.+++..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999999964

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.03  E-value=2.7e-06  Score=71.27  Aligned_cols=39  Identities=33%  Similarity=0.386  Sum_probs=32.4

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHH
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLL   64 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl   64 (121)
                      .|++++..-     -=|+||+++|+.|.+++|.|.||||||||.
T Consensus        15 ~I~i~gar~-----hNLkni~v~iP~~~l~viTGvSGSGKSSLa   53 (842)
T 2vf7_A           15 FVQVRGARQ-----HNLKDISVKVPRDALVVFTGVSGSGKSSLA   53 (842)
T ss_dssp             EEEEEEECS-----TTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred             eEEEeeccc-----cCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence            366655431     239999999999999999999999999996

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=98.00  E-value=3.3e-06  Score=60.13  Aligned_cols=27  Identities=26%  Similarity=0.338  Sum_probs=23.5

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      +-.+|.+++|+|++||||||+.+.|++
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999999999986

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.98  E-value=4e-07  Score=69.65  Aligned_cols=37  Identities=19%  Similarity=0.359  Sum_probs=32.2

Q ss_pred             ceEEeeEEEEeCCeE--EEEECCCCchHHHHHHHHHcCC
Q psy16345         35 PILKDVSGVVKPGEL--LAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        35 ~~l~~vsl~i~~G~~--~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+++.+++.+++|++  ++|+|++||||||+.++|++.+
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence            466777888889988  9999999999999999998854

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.98  E-value=2.4e-06  Score=59.00  Aligned_cols=35  Identities=40%  Similarity=0.450  Sum_probs=27.5

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCCCC---CccEEEECC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRVKL---DSGVIRLNK   82 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~~~---~~G~i~~~g   82 (121)
                      .+++|+|++|||||||++.|.+.+..   .-|.+..+.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~   44 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH   44 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence            58899999999999999999986543   236666644

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.96  E-value=4.5e-06  Score=55.78  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +++|+|++||||||+.+.|+..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998653

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.95  E-value=5.8e-06  Score=55.82  Aligned_cols=25  Identities=24%  Similarity=0.566  Sum_probs=22.5

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +.++.|+|++||||||+.+.|+..+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            5689999999999999999998754

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.92  E-value=3.7e-06  Score=60.61  Aligned_cols=40  Identities=20%  Similarity=0.298  Sum_probs=31.5

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER   84 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~   84 (121)
                      ....+.++.|+|++||||||+.+.|+..+.  .+.+.+++..
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~   67 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDS   67 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGG
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHH
Confidence            457789999999999999999999998654  2445666544

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.92  E-value=3e-06  Score=60.78  Aligned_cols=46  Identities=26%  Similarity=0.572  Sum_probs=30.2

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL   85 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~   85 (121)
                      .++.+++.+++|  +.|.||+|+|||||+++|++.....  -+.+++.++
T Consensus        36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~   81 (257)
T 1lv7_A           36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF   81 (257)
T ss_dssp             GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred             HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence            455566666655  8899999999999999999865421  355665443

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.90  E-value=7.2e-06  Score=55.66  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=21.8

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +|.++.|.|++||||||+.+.|+..
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~   26 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDN   26 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999999999763

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.90  E-value=3.3e-06  Score=67.33  Aligned_cols=47  Identities=19%  Similarity=0.156  Sum_probs=37.5

Q ss_pred             EeeEEEEeCCeEEEEECCCCchHHHHHHHHHc--CCCCCccEEEECCEe
Q psy16345         38 KDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG--RVKLDSGVIRLNKER   84 (121)
Q Consensus        38 ~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g--l~~~~~G~i~~~g~~   84 (121)
                      +.+.+++.++..+.|.|.+||||||++++|..  +..++.+++.+...+
T Consensus       158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liD  206 (512)
T 2ius_A          158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMID  206 (512)
T ss_dssp             CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEEC
T ss_pred             CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEEC
Confidence            35788889999999999999999999999875  455556666655444

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.90  E-value=5.7e-06  Score=70.13  Aligned_cols=29  Identities=34%  Similarity=0.579  Sum_probs=27.8

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHH
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLL   64 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl   64 (121)
                      =|+||+++|+++++++|.|.||||||||.
T Consensus        33 NLkni~v~iP~~~lvv~tG~SGSGKSSLa   61 (972)
T 2r6f_A           33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLA   61 (972)
T ss_dssp             SCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred             cCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence            49999999999999999999999999995

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.89  E-value=7.6e-06  Score=57.27  Aligned_cols=24  Identities=33%  Similarity=0.491  Sum_probs=22.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHc
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      ++-+++|.|++||||||+.+.|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999987

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.89  E-value=9.1e-06  Score=57.68  Aligned_cols=28  Identities=32%  Similarity=0.590  Sum_probs=23.3

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCCCCcc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVKLDSG   76 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~~~~G   76 (121)
                      .++|+|++|+|||||++.|+|...+..+
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~~~~~   58 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKVFHSG   58 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence            5799999999999999999997654443

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.88  E-value=4.3e-06  Score=60.37  Aligned_cols=32  Identities=41%  Similarity=0.666  Sum_probs=25.0

Q ss_pred             CeEEEEECCCCchHHHHHHHHH---cCCCCCccEE
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLA---GRVKLDSGVI   78 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~---gl~~~~~G~i   78 (121)
                      .-+++|.||+||||||+.+.|+   |+...+.|.+
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~   43 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM   43 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence            4589999999999999999998   4444444444

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.85  E-value=8.4e-06  Score=54.13  Aligned_cols=20  Identities=25%  Similarity=0.562  Sum_probs=18.6

Q ss_pred             eEEEEECCCCchHHHHHHHH
Q psy16345         48 ELLAVMGPSGCGKTTLLNCL   67 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l   67 (121)
                      .+++|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            37899999999999999999

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.84  E-value=9.6e-06  Score=55.23  Aligned_cols=26  Identities=38%  Similarity=0.474  Sum_probs=23.0

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++.++.|+|++||||||+.+.|+..
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999999999753

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.84  E-value=8.8e-06  Score=58.86  Aligned_cols=24  Identities=29%  Similarity=0.392  Sum_probs=21.1

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+++|+||+|||||||.+.|+..+
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC
Confidence            368999999999999999998743

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.83  E-value=2.2e-06  Score=59.45  Aligned_cols=25  Identities=40%  Similarity=0.686  Sum_probs=21.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVKL   73 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~~   73 (121)
                      +++|.|++||||||+++.|+..+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            6899999999999999999876543

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.82  E-value=4.5e-06  Score=70.51  Aligned_cols=29  Identities=31%  Similarity=0.533  Sum_probs=27.8

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHH
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLL   64 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl   64 (121)
                      =|+||+++|+++++++|.|.||||||||.
T Consensus        13 NLkni~~~ip~~~l~v~tG~SGSGKSsLa   41 (916)
T 3pih_A           13 NLKNITVRIPKNRLVVITGVSGSGKSSLA   41 (916)
T ss_dssp             TCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred             ccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence            39999999999999999999999999996

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.82  E-value=1.1e-05  Score=55.32  Aligned_cols=22  Identities=27%  Similarity=0.566  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +++|+|++||||||+.+.|+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            6899999999999999999873

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.80  E-value=1.4e-05  Score=54.94  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=24.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +|.+++|.|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            67899999999999999999999865

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.79  E-value=1.4e-05  Score=54.26  Aligned_cols=25  Identities=28%  Similarity=0.259  Sum_probs=21.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .+..+.|+|++||||||+.+.|+..
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3668999999999999999999754

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.78  E-value=1.7e-05  Score=54.66  Aligned_cols=27  Identities=30%  Similarity=0.470  Sum_probs=23.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      +|.+++|.|+.||||||+.+.|+..+.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            477899999999999999999987543

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.77  E-value=6.1e-06  Score=62.88  Aligned_cols=37  Identities=14%  Similarity=0.184  Sum_probs=31.2

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNK   82 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g   82 (121)
                      .+..+.|+|++|||||||++.|+....+..+.+.+.+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D   70 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID   70 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence            5678899999999999999999987766677777653

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.77  E-value=1.5e-05  Score=54.68  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=21.8

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ..+++|+|++||||||+.+.|+..
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            468999999999999999999975

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.77  E-value=1.3e-05  Score=55.88  Aligned_cols=22  Identities=45%  Similarity=0.715  Sum_probs=19.0

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      -+.|+||||||||||++.|...
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            3689999999999999988643

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.76  E-value=1.3e-05  Score=54.31  Aligned_cols=25  Identities=36%  Similarity=0.320  Sum_probs=22.3

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++.++.|+|++||||||+.+.|+.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence            4577899999999999999999984

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.76  E-value=1.7e-05  Score=53.26  Aligned_cols=22  Identities=23%  Similarity=0.449  Sum_probs=20.3

Q ss_pred             eEEEEECCCCchHHHHHHHHHc
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4789999999999999999986

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.75  E-value=1.4e-05  Score=53.98  Aligned_cols=23  Identities=35%  Similarity=0.505  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+.|+|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999998643

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.75  E-value=5.9e-06  Score=64.62  Aligned_cols=40  Identities=25%  Similarity=0.174  Sum_probs=34.3

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL   85 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~   85 (121)
                      ++.+++++|++|+||||++..|+..+....+++.+-+.+.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~  135 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV  135 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence            5899999999999999999999998877777887765554

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.74  E-value=1.7e-05  Score=54.88  Aligned_cols=25  Identities=28%  Similarity=0.401  Sum_probs=22.8

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .+|.+++|.|+.||||||+.+.|+.
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            4688999999999999999999975

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.73  E-value=1.6e-05  Score=54.22  Aligned_cols=26  Identities=27%  Similarity=0.432  Sum_probs=22.9

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++.+++|+|+.||||||+.+.|+..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999999999753

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.73  E-value=2.1e-05  Score=53.34  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=20.8

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHc
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      ++.+++|.|++||||||+.+.|+.
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999998864

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.71  E-value=2e-05  Score=54.53  Aligned_cols=25  Identities=28%  Similarity=0.412  Sum_probs=23.0

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      ++|.+++|.|+.||||||+.+.|+.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999999999985

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.70  E-value=1.8e-05  Score=58.29  Aligned_cols=36  Identities=22%  Similarity=0.389  Sum_probs=27.8

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNK   82 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g   82 (121)
                      ..+.++.|.|++||||||+.+.|+..++  .+.+.++.
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~   66 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN   66 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence            4578999999999999999999986432  24455554

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.70  E-value=3.4e-05  Score=59.01  Aligned_cols=36  Identities=28%  Similarity=0.526  Sum_probs=28.8

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcC-----------CCCCccEEEECC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGR-----------VKLDSGVIRLNK   82 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl-----------~~~~~G~i~~~g   82 (121)
                      |-.++|+|.+|+|||||++.|++-           ..|..|.+.+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            356899999999999999999982           345667777655

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.69  E-value=6.1e-05  Score=51.23  Aligned_cols=36  Identities=17%  Similarity=0.310  Sum_probs=26.3

Q ss_pred             EEEEECCCCchHHHHHHHHHc-C----CCCCcc----EEEECCEe
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG-R----VKLDSG----VIRLNKER   84 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g-l----~~~~~G----~i~~~g~~   84 (121)
                      .++|+|++|+|||||++.+.+ .    ..|+.+    .+.+++..
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~   66 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS   66 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence            588999999999999976654 3    345555    56666654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.69  E-value=1.9e-05  Score=57.32  Aligned_cols=23  Identities=39%  Similarity=0.634  Sum_probs=21.3

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|++|||||||++.|+|..
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999974

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.65  E-value=2.5e-05  Score=53.76  Aligned_cols=22  Identities=27%  Similarity=0.575  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +++|.|++||||||+.+.|+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~   25 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAA   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            7999999999999999999874

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.65  E-value=2.1e-06  Score=67.01  Aligned_cols=51  Identities=16%  Similarity=0.216  Sum_probs=39.9

Q ss_pred             ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc-EEEECCEeC
Q psy16345         35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG-VIRLNKERL   85 (121)
Q Consensus        35 ~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G-~i~~~g~~~   85 (121)
                      ..|+++..-+++|+++.|.|++|+|||||+..+++...+..| .+.+.+.+.
T Consensus       191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~  242 (454)
T 2r6a_A          191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM  242 (454)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred             HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            357777778999999999999999999999999886654334 566654443

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.65  E-value=2.4e-05  Score=52.98  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ++.|.|++||||||+.+.|+..+
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l   25 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998644

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.63  E-value=1.9e-05  Score=57.69  Aligned_cols=31  Identities=29%  Similarity=0.448  Sum_probs=26.4

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCCCCCccEE
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI   78 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i   78 (121)
                      ..+.|.||+|+||||++++|+..+....+.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~   78 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM   78 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence            6899999999999999999999876655543

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.62  E-value=3.7e-05  Score=53.84  Aligned_cols=26  Identities=31%  Similarity=0.480  Sum_probs=22.3

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +++.++.|+|+.||||||+.+.|+..
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999999753

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.62  E-value=2.3e-05  Score=52.98  Aligned_cols=25  Identities=32%  Similarity=0.497  Sum_probs=17.8

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ++.++.|.|++||||||+.+.|+..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            5678999999999999999999853

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=97.61  E-value=7e-05  Score=56.31  Aligned_cols=36  Identities=28%  Similarity=0.212  Sum_probs=31.2

Q ss_pred             CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      ....++...+++ .|.-+.|+|+||+|||||...|.+
T Consensus       131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            345788888887 889999999999999999998886

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.60  E-value=3.3e-05  Score=52.78  Aligned_cols=26  Identities=23%  Similarity=0.443  Sum_probs=22.9

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +.+.+++|+|+.||||||+.+.|+..
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.59  E-value=3.5e-05  Score=53.04  Aligned_cols=25  Identities=28%  Similarity=0.355  Sum_probs=21.8

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      .+++|+|++|||||||+..|+..+.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            4789999999999999999987653

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.59  E-value=3e-05  Score=57.15  Aligned_cols=40  Identities=28%  Similarity=0.511  Sum_probs=31.9

Q ss_pred             EEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCE
Q psy16345         42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE   83 (121)
Q Consensus        42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~   83 (121)
                      +.+.++..+.|.||+|+|||||+++|++...  .+.+.+++.
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~   83 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGP   83 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHH
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhH
Confidence            3467889999999999999999999998653  455666543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.58  E-value=3.8e-05  Score=52.02  Aligned_cols=26  Identities=31%  Similarity=0.457  Sum_probs=22.4

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +.-.++|+|++|+|||||++.+.+..
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            33478999999999999999999854

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.57  E-value=3.9e-05  Score=54.03  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=21.3

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++.++.|+|+.||||||+.+.|+.
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999985

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.56  E-value=5.8e-05  Score=56.89  Aligned_cols=28  Identities=21%  Similarity=0.226  Sum_probs=25.7

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      -+++|+++.|.|++|+|||||+..++..
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999999988873

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.56  E-value=4.3e-05  Score=53.13  Aligned_cols=21  Identities=29%  Similarity=0.412  Sum_probs=19.0

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|+|++||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999964

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.56  E-value=5.2e-05  Score=52.31  Aligned_cols=26  Identities=31%  Similarity=0.415  Sum_probs=22.2

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ..+.+++|+|+.||||||+.+.|+..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999999753

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.55  E-value=4.7e-05  Score=55.79  Aligned_cols=23  Identities=35%  Similarity=0.635  Sum_probs=21.2

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|++|+|||||++.|+|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            68999999999999999999853

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.54  E-value=4.8e-05  Score=51.61  Aligned_cols=22  Identities=41%  Similarity=0.421  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +++|.|+.||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~   23 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEY   23 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999763

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.54  E-value=7.7e-06  Score=64.61  Aligned_cols=39  Identities=28%  Similarity=0.560  Sum_probs=31.6

Q ss_pred             cCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         31 LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        31 ~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +.....++++++.+++|  +.|+||+|+|||||+|+|++..
T Consensus        35 l~~~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           35 LKDPSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             HHCTHHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred             hhChHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence            44445667777777777  7799999999999999999854

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.54  E-value=5.4e-05  Score=52.12  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=21.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHc
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      +..+++|.|+.||||||+.+.|+.
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999974

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.54  E-value=5.5e-05  Score=50.07  Aligned_cols=23  Identities=35%  Similarity=0.658  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            47899999999999999998753

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.54  E-value=5.4e-05  Score=50.69  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.9

Q ss_pred             eEEEEECCCCchHHHHHHHHHcC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ++++|+|..||||||+.+.|+..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999763

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.53  E-value=2.7e-05  Score=55.27  Aligned_cols=25  Identities=28%  Similarity=0.630  Sum_probs=21.8

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHH
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      +.+|+.+.+.||+||||||++.++.
T Consensus        73 i~~g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           73 ISQNSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred             HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence            4579999999999999999887664

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.53  E-value=4.2e-05  Score=51.17  Aligned_cols=23  Identities=39%  Similarity=0.573  Sum_probs=20.4

Q ss_pred             eEEEEECCCCchHHHHHHHHHcC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .+++|.|++||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999763

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.53  E-value=4.9e-05  Score=49.91  Aligned_cols=22  Identities=18%  Similarity=0.421  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.52  E-value=5.9e-05  Score=49.60  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999999873

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.52  E-value=7.3e-05  Score=55.76  Aligned_cols=28  Identities=25%  Similarity=0.345  Sum_probs=25.5

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      -+++|+++.|.|++|+|||||+..++..
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence            5899999999999999999999888763

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.52  E-value=5.7e-05  Score=50.37  Aligned_cols=22  Identities=23%  Similarity=0.255  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +++|.|+.||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999763

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.52  E-value=5.3e-05  Score=52.73  Aligned_cols=21  Identities=33%  Similarity=0.398  Sum_probs=19.1

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|+|++||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999964

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.51  E-value=7.5e-05  Score=49.63  Aligned_cols=25  Identities=32%  Similarity=0.508  Sum_probs=21.8

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +.-.++|+|+.|+|||||++.+.+-
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4557899999999999999999873

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.51  E-value=4.4e-05  Score=50.25  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|+.|+|||||++.+.+..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCcc
Confidence            47899999999999999998754

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.51  E-value=5.7e-05  Score=51.11  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.8

Q ss_pred             CeEEEEECCCCchHHHHHHHHHc
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      ..+++|.|+.||||||+.+.|+.
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999975

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.50  E-value=6.5e-05  Score=49.54  Aligned_cols=23  Identities=35%  Similarity=0.569  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|+.|+|||||++.+.+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            47899999999999999998643

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.50  E-value=4.6e-05  Score=51.71  Aligned_cols=23  Identities=30%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             eEEEEECCCCchHHHHHHHHHcC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .+++|+|++||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999753

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.50  E-value=5.9e-05  Score=49.26  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++++|+.|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.49  E-value=4.4e-05  Score=53.50  Aligned_cols=24  Identities=17%  Similarity=0.173  Sum_probs=21.3

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHc
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .+.++.|+|++||||||+.+.|+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999999975

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.49  E-value=6e-05  Score=49.25  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=19.6

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5799999999999999998753

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.49  E-value=5.9e-05  Score=54.09  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=21.3

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      --+++|.|++||||||+.+.|+..
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999773

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.49  E-value=4.6e-05  Score=51.56  Aligned_cols=23  Identities=39%  Similarity=0.525  Sum_probs=21.0

Q ss_pred             eEEEEECCCCchHHHHHHHHHcC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      -.++|+|++|+|||||++.+.+-
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999975

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.48  E-value=6.2e-05  Score=49.23  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++++|+.|+|||||++.+.+-
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999864

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.48  E-value=5.2e-05  Score=49.40  Aligned_cols=22  Identities=36%  Similarity=0.498  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.48  E-value=7.7e-05  Score=53.90  Aligned_cols=25  Identities=32%  Similarity=0.360  Sum_probs=22.3

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ++.++.|+|++||||||+.+.|+..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999863

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.47  E-value=6.4e-05  Score=49.53  Aligned_cols=22  Identities=23%  Similarity=0.354  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5789999999999999999864

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.47  E-value=6.2e-05  Score=50.00  Aligned_cols=22  Identities=41%  Similarity=0.628  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999874

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.47  E-value=6.6e-05  Score=49.36  Aligned_cols=23  Identities=17%  Similarity=0.456  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999998754

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.46  E-value=6.8e-05  Score=49.84  Aligned_cols=22  Identities=32%  Similarity=0.596  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999988764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.45  E-value=7e-05  Score=49.10  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=19.7

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999863

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.45  E-value=7.1e-05  Score=49.14  Aligned_cols=22  Identities=18%  Similarity=0.445  Sum_probs=19.7

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.45  E-value=8.6e-05  Score=53.17  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=21.7

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHc
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      ++-+++|.|++||||||+.+.|+.
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999999974

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.45  E-value=6.1e-05  Score=50.98  Aligned_cols=24  Identities=33%  Similarity=0.511  Sum_probs=21.3

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      --.++|+|+.|+|||||++.+.+-
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346899999999999999999875

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.45  E-value=6.2e-05  Score=50.68  Aligned_cols=23  Identities=43%  Similarity=0.603  Sum_probs=20.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            68999999999999999998753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.45  E-value=7.4e-05  Score=49.64  Aligned_cols=22  Identities=27%  Similarity=0.560  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.44  E-value=0.00017  Score=51.09  Aligned_cols=37  Identities=27%  Similarity=0.221  Sum_probs=29.3

Q ss_pred             CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ....++..-++ ..|..+.|+||+|+|||||...|+..
T Consensus        21 ~~~~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           21 ERRSMHGVLVD-IYGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             CCCCEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             cceeeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence            34456666555 46789999999999999999998864

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.44  E-value=6.3e-05  Score=56.79  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=23.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ..-.++|+|++|+|||||++.|++..
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44589999999999999999999864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.44  E-value=7.9e-05  Score=51.97  Aligned_cols=24  Identities=29%  Similarity=0.493  Sum_probs=21.3

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ..+++|+|..||||||+.+.|+..
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999999864

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.44  E-value=8.1e-05  Score=55.58  Aligned_cols=36  Identities=25%  Similarity=0.265  Sum_probs=28.0

Q ss_pred             CCe--EEEEECCCCchHHHHHHHHHcCCCCCc--cEEEEC
Q psy16345         46 PGE--LLAVMGPSGCGKTTLLNCLAGRVKLDS--GVIRLN   81 (121)
Q Consensus        46 ~G~--~~~liG~nGsGKSTLl~~l~gl~~~~~--G~i~~~   81 (121)
                      .+.  .+.|.||+|+|||||++.+++...+..  .-+.++
T Consensus        41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~   80 (389)
T 1fnn_A           41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN   80 (389)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence            446  899999999999999999998776542  344454

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.43  E-value=8.9e-05  Score=51.56  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=23.3

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+..+.|.||+|+|||||++.++...
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~   76 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARA   76 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            57889999999999999999998754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.43  E-value=5.6e-05  Score=52.02  Aligned_cols=26  Identities=35%  Similarity=0.434  Sum_probs=22.6

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCCCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRVKL   73 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~~~   73 (121)
                      ..+.|.||+|+|||||+++|+.....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~   80 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAK   80 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            67899999999999999999876543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.42  E-value=6.7e-05  Score=49.33  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4789999999999999999864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.42  E-value=8e-05  Score=50.15  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.42  E-value=7.9e-05  Score=50.19  Aligned_cols=24  Identities=33%  Similarity=0.444  Sum_probs=21.1

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      .++|+|+.|+|||||++.+.+...
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            478999999999999999998643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.42  E-value=6.9e-05  Score=49.77  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.42  E-value=3.4e-05  Score=57.01  Aligned_cols=25  Identities=24%  Similarity=0.437  Sum_probs=19.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +.-++||.|++||||||+.+.|...
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~   28 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQI   28 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999763

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=97.42  E-value=8.4e-05  Score=55.11  Aligned_cols=22  Identities=45%  Similarity=0.741  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|.+|+|||||++.|.|.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999985

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.41  E-value=5.9e-05  Score=56.02  Aligned_cols=28  Identities=18%  Similarity=0.415  Sum_probs=24.7

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      ..+..+.|.||+|+|||||++.+++...
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~   70 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH   70 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999998654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=97.41  E-value=7.5e-05  Score=50.16  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            47899999999999999998853

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=97.41  E-value=8.7e-05  Score=48.69  Aligned_cols=21  Identities=29%  Similarity=0.474  Sum_probs=19.3

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|+|+.|+|||||++.+.+
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999999986

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.40  E-value=0.0001  Score=48.99  Aligned_cols=22  Identities=36%  Similarity=0.700  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4789999999999999999864

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.40  E-value=8.9e-05  Score=49.65  Aligned_cols=22  Identities=36%  Similarity=0.499  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.|.+-
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999864

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.40  E-value=8.8e-05  Score=53.94  Aligned_cols=26  Identities=38%  Similarity=0.624  Sum_probs=23.4

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ++..+.|.||+|+|||||++++++..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            56788999999999999999999865

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.40  E-value=8.8e-05  Score=50.28  Aligned_cols=22  Identities=36%  Similarity=0.613  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4799999999999999999874

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.40  E-value=8.9e-05  Score=49.72  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999999863

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.39  E-value=9.3e-05  Score=48.77  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             CeEEEEECCCCchHHHHHHHHHc
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .-.++|+|+.|+|||||++.+.+
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            34689999999999999999975

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.39  E-value=7.9e-05  Score=54.61  Aligned_cols=23  Identities=30%  Similarity=0.424  Sum_probs=20.9

Q ss_pred             CeEEEEECCCCchHHHHHHHHHc
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      ..+++|.|++||||||+.+.|+.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999984

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=97.38  E-value=9.8e-05  Score=54.74  Aligned_cols=23  Identities=43%  Similarity=0.694  Sum_probs=21.2

Q ss_pred             eEEEEECCCCchHHHHHHHHHcC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      -+++|+|+.|+|||||++.|.|.
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            47899999999999999999985

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.37  E-value=0.0001  Score=51.93  Aligned_cols=21  Identities=33%  Similarity=0.542  Sum_probs=19.2

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      ++.|.|++||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999975

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.37  E-value=5.1e-05  Score=50.78  Aligned_cols=24  Identities=33%  Similarity=0.422  Sum_probs=21.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHc
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      +.-.++|+|++|+|||||++.+.+
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            345789999999999999999984

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=97.37  E-value=0.0001  Score=49.18  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            5899999999999999999864

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=97.36  E-value=0.00011  Score=48.26  Aligned_cols=21  Identities=33%  Similarity=0.398  Sum_probs=19.0

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|+|+.|+|||||++.+.+
T Consensus         2 ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            378999999999999999975

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.36  E-value=0.0001  Score=49.69  Aligned_cols=22  Identities=36%  Similarity=0.498  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++++|+.|+|||||++.|++-
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5889999999999999999864

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.36  E-value=0.00011  Score=48.73  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999999864

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.35  E-value=0.00011  Score=48.94  Aligned_cols=22  Identities=36%  Similarity=0.504  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5799999999999999999864

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=97.35  E-value=6.7e-05  Score=52.00  Aligned_cols=24  Identities=33%  Similarity=0.473  Sum_probs=21.6

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      -.++|+|+.|+|||||++.|.+-.
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999864

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=97.35  E-value=0.0001  Score=53.42  Aligned_cols=23  Identities=39%  Similarity=0.657  Sum_probs=21.1

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|..|+|||||++.|.|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999863

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.34  E-value=8.9e-05  Score=53.85  Aligned_cols=23  Identities=48%  Similarity=0.567  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|++|+|||||++.|.+-.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~~   32 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLTD   32 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48899999999999999987753

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=97.33  E-value=8.8e-05  Score=50.95  Aligned_cols=22  Identities=36%  Similarity=0.617  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|++|+|||||++.+++.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.33  E-value=0.0001  Score=48.87  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=19.7

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5799999999999999999853

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=97.33  E-value=0.00012  Score=48.75  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5799999999999999999864

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=97.33  E-value=9.4e-05  Score=56.58  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|++|+|||||++.|++.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3799999999999999999875

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.32  E-value=0.00011  Score=51.53  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=21.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ++..+.|+|+.||||||+.+.|+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            3567899999999999999999753

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.32  E-value=0.00012  Score=50.58  Aligned_cols=24  Identities=33%  Similarity=0.552  Sum_probs=21.1

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      -.++|+|+.|+|||||++.|.+-.
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368899999999999999998754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.31  E-value=0.00012  Score=52.45  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=21.3

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      -.++|+|++|+|||||++.|.+-.
T Consensus        23 ~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998753

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.31  E-value=0.00014  Score=53.04  Aligned_cols=22  Identities=23%  Similarity=0.449  Sum_probs=20.3

Q ss_pred             eEEEEECCCCchHHHHHHHHHc
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++.|+|++||||||+.+.|+.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999986

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.31  E-value=0.00013  Score=49.79  Aligned_cols=22  Identities=36%  Similarity=0.678  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.31  E-value=0.00016  Score=48.17  Aligned_cols=27  Identities=30%  Similarity=0.549  Sum_probs=22.6

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ..+..+.|.||.|+|||||++.++..+
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345678899999999999999998753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=97.30  E-value=0.00013  Score=49.25  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4899999999999999999874

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.30  E-value=0.00013  Score=49.60  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999864

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=97.30  E-value=0.00014  Score=48.85  Aligned_cols=26  Identities=31%  Similarity=0.459  Sum_probs=22.0

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ++.-.++|+|+.|+|||||++.+.+-
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            34557899999999999999999864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.29  E-value=0.00012  Score=50.96  Aligned_cols=21  Identities=19%  Similarity=0.295  Sum_probs=19.1

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|.|+.||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999975

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.29  E-value=0.00014  Score=49.22  Aligned_cols=22  Identities=36%  Similarity=0.456  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999864

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.29  E-value=0.00012  Score=49.09  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5799999999999999999864

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.29  E-value=0.00014  Score=48.65  Aligned_cols=22  Identities=32%  Similarity=0.466  Sum_probs=19.7

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999864

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=97.28  E-value=0.00016  Score=52.39  Aligned_cols=23  Identities=39%  Similarity=0.593  Sum_probs=20.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|..|+|||||++.|+|..
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999853

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=97.28  E-value=0.00015  Score=48.42  Aligned_cols=21  Identities=33%  Similarity=0.396  Sum_probs=19.2

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|+|+.|+|||||++.+.+
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            579999999999999999975

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.28  E-value=0.00018  Score=50.84  Aligned_cols=25  Identities=36%  Similarity=0.500  Sum_probs=21.8

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .+..+.|+|+.||||||+.+.|+..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=97.27  E-value=0.00017  Score=49.20  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999874

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.27  E-value=0.00019  Score=50.75  Aligned_cols=28  Identities=36%  Similarity=0.635  Sum_probs=23.9

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      .+|.++.|.|+.||||||+++.|...+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999976443

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=97.27  E-value=0.00015  Score=49.65  Aligned_cols=21  Identities=43%  Similarity=0.749  Sum_probs=19.5

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|+|.+|+|||||++.+++
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999986

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=97.27  E-value=0.00014  Score=52.98  Aligned_cols=23  Identities=39%  Similarity=0.640  Sum_probs=21.0

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|..|||||||++.|+|..
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999863

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.27  E-value=0.00013  Score=49.21  Aligned_cols=22  Identities=45%  Similarity=0.750  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|++|+|||||++.+.+-
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999864

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.26  E-value=0.00013  Score=49.36  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=20.0

Q ss_pred             eEEEEECCCCchHHHHHHHHHc
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      =.++|+|+.|+|||||++.+.+
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHc
Confidence            3689999999999999999986

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.26  E-value=0.00023  Score=54.06  Aligned_cols=27  Identities=37%  Similarity=0.566  Sum_probs=23.8

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +++.++.|+||+|||||||...|+..+
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence            356799999999999999999999765

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.26  E-value=0.00016  Score=48.86  Aligned_cols=22  Identities=32%  Similarity=0.413  Sum_probs=19.6

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999753

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=97.26  E-value=0.00014  Score=49.50  Aligned_cols=22  Identities=18%  Similarity=0.501  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4799999999999999999864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.26  E-value=0.00013  Score=50.57  Aligned_cols=24  Identities=33%  Similarity=0.484  Sum_probs=21.1

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      --.++|+|+.|+|||||++.|++.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHH
Confidence            357899999999999999998864

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=97.25  E-value=0.00016  Score=49.26  Aligned_cols=22  Identities=27%  Similarity=0.608  Sum_probs=19.5

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999874

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=97.25  E-value=0.00016  Score=48.91  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.4

Q ss_pred             eEEEEECCCCchHHHHHHHHHcC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      -.++|+|..|+|||||++.+.+-
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            35789999999999999999874

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=97.24  E-value=0.00017  Score=50.56  Aligned_cols=23  Identities=17%  Similarity=0.459  Sum_probs=20.9

Q ss_pred             eEEEEECCCCchHHHHHHHHHcC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999875

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.24  E-value=0.00014  Score=49.76  Aligned_cols=24  Identities=21%  Similarity=0.296  Sum_probs=21.0

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            368899999999999999998743

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.24  E-value=0.00017  Score=48.87  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4789999999999999999864

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.23  E-value=0.00017  Score=54.71  Aligned_cols=25  Identities=32%  Similarity=0.521  Sum_probs=22.0

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      .+++|+||+|||||||.+.|+..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            4899999999999999999987553

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.23  E-value=0.00017  Score=55.63  Aligned_cols=26  Identities=23%  Similarity=0.333  Sum_probs=23.1

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ....++.|+|++||||||+.+.|+..
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999999999753

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.23  E-value=0.00018  Score=47.92  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=20.3

Q ss_pred             eEEEEECCCCchHHHHHHHHHcC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      =.++|+|+.|+|||||++.+.+-
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999863

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.23  E-value=0.00015  Score=48.40  Aligned_cols=21  Identities=24%  Similarity=0.387  Sum_probs=19.2

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|+|+.|+|||||++.+.+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            578999999999999999984

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.23  E-value=0.00016  Score=52.97  Aligned_cols=23  Identities=30%  Similarity=0.624  Sum_probs=21.2

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|+.|+|||||++.|+|..
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999864

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.23  E-value=0.00021  Score=52.90  Aligned_cols=27  Identities=19%  Similarity=0.245  Sum_probs=24.8

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      -+++|+++.|.|++|+|||||+..++.
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999999999988874

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.22  E-value=0.00018  Score=48.57  Aligned_cols=24  Identities=25%  Similarity=0.371  Sum_probs=20.8

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .-.++|+|+.|+|||||++.+.+-
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999999853

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.22  E-value=0.00018  Score=48.78  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5889999999999999999874

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=97.22  E-value=0.00021  Score=49.27  Aligned_cols=23  Identities=39%  Similarity=0.505  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47999999999999999998743

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=97.22  E-value=0.00018  Score=48.39  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5889999999999999999864

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=97.21  E-value=0.00012  Score=49.46  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.21  E-value=0.00016  Score=49.06  Aligned_cols=23  Identities=35%  Similarity=0.455  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            57899999999999999998743

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=97.21  E-value=0.00018  Score=49.33  Aligned_cols=22  Identities=32%  Similarity=0.563  Sum_probs=19.5

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5799999999999999999864

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.21  E-value=0.00016  Score=51.79  Aligned_cols=28  Identities=32%  Similarity=0.583  Sum_probs=21.3

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ..+|.++.|.|++||||||+.+.|+..+
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l   49 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRL   49 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999999987654

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.20  E-value=0.00022  Score=50.67  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=22.9

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +|.+++|.|..||||||+++.|+..+
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            36789999999999999999998654

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.20  E-value=0.00018  Score=50.02  Aligned_cols=25  Identities=28%  Similarity=0.480  Sum_probs=21.7

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +.+++|+|++||||||+.+.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4579999999999999999998743

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=97.20  E-value=0.0002  Score=48.55  Aligned_cols=22  Identities=36%  Similarity=0.498  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999999863

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.20  E-value=0.0002  Score=48.73  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.4

Q ss_pred             eEEEEECCCCchHHHHHHHHHcC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999999864

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.20  E-value=0.00016  Score=49.99  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.6

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|++|+|||||++.+.+-
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5799999999999999988753

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.20  E-value=0.0002  Score=49.09  Aligned_cols=24  Identities=29%  Similarity=0.382  Sum_probs=20.9

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .=.++|+|+.|+|||||++.+.+-
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999999864

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=97.20  E-value=0.00016  Score=48.22  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5789999999999999999863

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.20  E-value=0.0002  Score=48.92  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=21.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +--.++|+|+.|+|||||++.+.+-
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhC
Confidence            3456899999999999999999864

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=97.19  E-value=0.00016  Score=48.59  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999864

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.19  E-value=0.00019  Score=51.83  Aligned_cols=29  Identities=31%  Similarity=0.580  Sum_probs=24.7

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      +.++.-+.|.||+|+|||||++.++....
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            35667799999999999999999998653

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=97.19  E-value=0.00024  Score=48.36  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=20.4

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .=.++|+|+.|+|||||++.+.+-
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999999864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.18  E-value=0.0002  Score=47.71  Aligned_cols=27  Identities=26%  Similarity=0.471  Sum_probs=22.6

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .....+.|.||.|+|||||++.++..+
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345677899999999999999998754

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=97.18  E-value=0.00018  Score=49.28  Aligned_cols=22  Identities=36%  Similarity=0.546  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999999864

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=97.18  E-value=0.00024  Score=56.08  Aligned_cols=31  Identities=26%  Similarity=0.427  Sum_probs=27.2

Q ss_pred             EEEeCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      +.+-+|+..+|+|++|+|||||++.|+....
T Consensus       146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence            5678999999999999999999999887543

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.17  E-value=0.00022  Score=51.35  Aligned_cols=26  Identities=19%  Similarity=0.478  Sum_probs=23.5

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +|.++.|.|++||||||+++.|...+
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l   51 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETL   51 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999997654

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.17  E-value=0.00032  Score=49.17  Aligned_cols=26  Identities=27%  Similarity=0.378  Sum_probs=23.0

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      =+++|+++.|.|++|+|||||+-.++
T Consensus        26 Gl~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           26 GFPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            47999999999999999999976554

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=97.17  E-value=0.00022  Score=48.69  Aligned_cols=23  Identities=17%  Similarity=0.377  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|.+|+|||||++.+.+-.
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58899999999999999998853

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.16  E-value=0.00025  Score=51.68  Aligned_cols=29  Identities=28%  Similarity=0.496  Sum_probs=22.6

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCCCCCcc
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRVKLDSG   76 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~~~~~G   76 (121)
                      -.++++|.+|+|||||++.|.|......|
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~  128 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVG  128 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence            48899999999999999999986554334

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.15  E-value=0.00016  Score=53.33  Aligned_cols=27  Identities=30%  Similarity=0.401  Sum_probs=23.2

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      .+..+.|.||+|+|||||++.|+..+.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~   62 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAK   62 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            346788999999999999999998653

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=97.15  E-value=0.00023  Score=48.99  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=20.3

Q ss_pred             eEEEEECCCCchHHHHHHHHHcC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      -.++|+|+.|+|||||++.+.+-
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36889999999999999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.15  E-value=0.00024  Score=48.17  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=19.4

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            5899999999999999888753

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.15  E-value=0.0002  Score=49.27  Aligned_cols=22  Identities=41%  Similarity=0.667  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6899999999999999999874

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=97.15  E-value=0.00023  Score=49.33  Aligned_cols=22  Identities=41%  Similarity=0.768  Sum_probs=19.7

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999863

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.15  E-value=0.0002  Score=51.97  Aligned_cols=23  Identities=35%  Similarity=0.622  Sum_probs=21.2

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|..|+|||||++.|.|..
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCC
Confidence            68999999999999999999864

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.15  E-value=0.00029  Score=53.08  Aligned_cols=25  Identities=40%  Similarity=0.630  Sum_probs=22.1

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +.+++|+||+|||||||.+.|+..+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4688999999999999999998754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=97.13  E-value=0.00021  Score=49.50  Aligned_cols=22  Identities=45%  Similarity=0.750  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999875

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=97.13  E-value=0.00024  Score=51.18  Aligned_cols=23  Identities=35%  Similarity=0.644  Sum_probs=20.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|..|+|||||++.|.+-.
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999854

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=97.13  E-value=0.00028  Score=50.01  Aligned_cols=27  Identities=26%  Similarity=0.438  Sum_probs=23.7

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      +|.++.|-|++||||||+++.|...+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999986543

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.12  E-value=0.00028  Score=48.46  Aligned_cols=23  Identities=30%  Similarity=0.432  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+.|.||+|+|||||++.++..+
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~   69 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGL   69 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            78999999999999999997643

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.12  E-value=0.00031  Score=50.01  Aligned_cols=27  Identities=26%  Similarity=0.380  Sum_probs=23.4

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .+++..++.|+||.||||+|..+.|+.
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            446778999999999999999999974

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.12  E-value=0.00028  Score=52.49  Aligned_cols=34  Identities=18%  Similarity=0.105  Sum_probs=29.1

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      -|+.+..-+++|+++.|.|++|+|||||+..++.
T Consensus        57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~   90 (315)
T 3bh0_A           57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK   90 (315)
T ss_dssp             HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            4666665689999999999999999999888764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=97.12  E-value=0.00016  Score=48.34  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=9.2

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999998764

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=97.11  E-value=0.00035  Score=49.96  Aligned_cols=27  Identities=30%  Similarity=0.338  Sum_probs=24.0

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+|.++.|.|++||||||+.+.|...+
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l   45 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYL   45 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999997644

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=97.11  E-value=0.00025  Score=51.28  Aligned_cols=23  Identities=35%  Similarity=0.655  Sum_probs=20.8

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++++|++|+|||||++.|.+-.
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999999853

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.10  E-value=0.00028  Score=53.16  Aligned_cols=24  Identities=38%  Similarity=0.594  Sum_probs=21.5

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++.|+||+|||||||.+.|+..+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            478999999999999999999754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.10  E-value=0.00021  Score=55.59  Aligned_cols=23  Identities=35%  Similarity=0.712  Sum_probs=21.0

Q ss_pred             eEEEEECCCCchHHHHHHHHHcC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      -.++|+|++|+|||||++.|+|-
T Consensus        24 ~~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             CEEEEECSSSSSHHHHHHHHEEE
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            37899999999999999999884

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=97.10  E-value=0.00018  Score=51.81  Aligned_cols=27  Identities=22%  Similarity=0.303  Sum_probs=23.8

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++.+++|.|+.||||||+.+.|+..+
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            577899999999999999999998765

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.09  E-value=0.00032  Score=49.77  Aligned_cols=27  Identities=37%  Similarity=0.620  Sum_probs=22.8

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ....-+.|.||+|+|||||++.++...
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            445568899999999999999998754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=97.09  E-value=0.00025  Score=48.61  Aligned_cols=22  Identities=36%  Similarity=0.662  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999874

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=97.09  E-value=0.00034  Score=49.13  Aligned_cols=22  Identities=41%  Similarity=0.685  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|.+|+|||||++.+.+.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.08  E-value=4.4e-05  Score=56.50  Aligned_cols=38  Identities=21%  Similarity=0.368  Sum_probs=27.5

Q ss_pred             cceEEeeEEEEeCC--eEEEEECCCCchHHHHHHHHHcCC
Q psy16345         34 RPILKDVSGVVKPG--ELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        34 ~~~l~~vsl~i~~G--~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ..+++.+.-.+..|  ..+.|.||+|+||||+++++++.+
T Consensus        43 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           43 DHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             CTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            33444444444444  348999999999999999998864

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.08  E-value=0.00025  Score=48.37  Aligned_cols=24  Identities=29%  Similarity=0.293  Sum_probs=20.8

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .-.++|+|+.|+|||||++.+.+-
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999999753

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.07  E-value=0.00026  Score=49.22  Aligned_cols=23  Identities=35%  Similarity=0.498  Sum_probs=20.4

Q ss_pred             eEEEEECCCCchHHHHHHHHHcC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      -.++|+|..|+|||||++.++.-
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            57899999999999999888764

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=97.07  E-value=0.00033  Score=49.79  Aligned_cols=29  Identities=31%  Similarity=0.399  Sum_probs=25.5

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVKL   73 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~   73 (121)
                      .+|.++.+-|+.||||||+++.|...+..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            46899999999999999999999876654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.06  E-value=0.00028  Score=47.76  Aligned_cols=22  Identities=36%  Similarity=0.433  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=97.02  E-value=0.00014  Score=50.29  Aligned_cols=22  Identities=32%  Similarity=0.566  Sum_probs=19.6

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+++-
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999988853

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.01  E-value=0.0005  Score=52.28  Aligned_cols=28  Identities=29%  Similarity=0.452  Sum_probs=24.8

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      -+++|+++.|.|++|+|||||...++..
T Consensus        59 Gl~~G~ii~I~G~pGsGKTtLal~la~~   86 (356)
T 1u94_A           59 GLPMGRIVEIYGPESSGKTTLTLQVIAA   86 (356)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3889999999999999999998877753

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.00  E-value=0.00031  Score=54.57  Aligned_cols=25  Identities=36%  Similarity=0.460  Sum_probs=22.3

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +..+.|.||+|+|||||+++|++..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999999865

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=96.99  E-value=0.00016  Score=49.26  Aligned_cols=22  Identities=27%  Similarity=0.570  Sum_probs=4.3

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999988765

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.99  E-value=0.00042  Score=48.25  Aligned_cols=22  Identities=32%  Similarity=0.608  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5799999999999999999874

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.99  E-value=0.00036  Score=47.91  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=19.7

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhhC
Confidence            4799999999999999999764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.97  E-value=0.00037  Score=47.93  Aligned_cols=22  Identities=32%  Similarity=0.338  Sum_probs=19.6

Q ss_pred             eEEEEECCCCchHHHHHHHHHc
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      =.++|+|+.|+|||||++.+.+
T Consensus        31 ~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           31 IKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHh
Confidence            4688999999999999988875

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.96  E-value=0.00044  Score=48.03  Aligned_cols=23  Identities=39%  Similarity=0.626  Sum_probs=20.3

Q ss_pred             eEEEEECCCCchHHHHHHHHHcC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        28 ~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           28 CKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            36889999999999999998764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.95  E-value=0.00058  Score=51.34  Aligned_cols=25  Identities=32%  Similarity=0.440  Sum_probs=21.8

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ..++.|+||+|||||||...|+..+
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4578999999999999999998654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=96.94  E-value=0.00025  Score=47.79  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHHc
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .=.++|+|+.|+|||||++.+.+
T Consensus        22 ~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           22 KIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            34689999999999999999965

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.93  E-value=0.00054  Score=48.21  Aligned_cols=22  Identities=41%  Similarity=0.670  Sum_probs=19.3

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ++.|+||.||||+|..+.|+.-
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999753

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.92  E-value=0.0013  Score=45.71  Aligned_cols=33  Identities=18%  Similarity=0.065  Sum_probs=25.5

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++..-.+ ..|.-+.|.|+||+|||||...|..
T Consensus         6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A            6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            44444444 5688999999999999999887764

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.91  E-value=0.0007  Score=44.48  Aligned_cols=27  Identities=19%  Similarity=0.166  Sum_probs=23.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      .+.-+.|.||+|+|||++.+.|+....
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~~   49 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFGR   49 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence            455688999999999999999998653

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.88  E-value=0.00048  Score=47.27  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=19.7

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999853

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.86  E-value=0.00046  Score=54.08  Aligned_cols=34  Identities=26%  Similarity=0.288  Sum_probs=26.5

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCCCCCccEEE
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR   79 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~   79 (121)
                      ++.++.++|++|+||||++..|+..+....-++.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVl  132 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVG  132 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEE
Confidence            4789999999999999999999875544333443

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.86  E-value=0.00047  Score=51.18  Aligned_cols=27  Identities=22%  Similarity=0.319  Sum_probs=23.6

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ..+..+.|.||+|+|||||++.++...
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999998755

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.85  E-value=0.00035  Score=52.92  Aligned_cols=49  Identities=16%  Similarity=0.160  Sum_probs=35.3

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER   84 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~   84 (121)
                      -|+.+..-+.+|+++.|.|++|+|||||+..++.......+.+.|..-+
T Consensus        35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE   83 (338)
T 4a1f_A           35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE   83 (338)
T ss_dssp             HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            3455555689999999999999999999988876433234556554333

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.84  E-value=0.00065  Score=46.16  Aligned_cols=22  Identities=41%  Similarity=0.508  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .+.|.||.|+|||||++.++..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.82  E-value=0.00068  Score=52.61  Aligned_cols=24  Identities=29%  Similarity=0.547  Sum_probs=21.0

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+++|+||+|||||||.+.|+..+
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHC
Confidence            478999999999999999998643

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.80  E-value=0.00025  Score=50.74  Aligned_cols=28  Identities=36%  Similarity=0.699  Sum_probs=22.4

Q ss_pred             EEEEeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        41 sl~i~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .+..++|  +.|.||+|+|||||+++|+..
T Consensus        40 ~~~~~~~--vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             SCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred             CCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence            3444455  779999999999999999874

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=96.80  E-value=0.00077  Score=49.81  Aligned_cols=24  Identities=33%  Similarity=0.592  Sum_probs=21.0

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +-.++|+|+.|+|||||++.+.+-
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456899999999999999998765

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=96.79  E-value=0.00058  Score=52.82  Aligned_cols=22  Identities=36%  Similarity=0.752  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|++|+|||||++.|+|-
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~   26 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGE   26 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999884

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.79  E-value=0.00078  Score=48.99  Aligned_cols=27  Identities=33%  Similarity=0.476  Sum_probs=22.3

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +.+..+.|.||+|+|||||++.++..+
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            345578999999999999999887654

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.78  E-value=0.00084  Score=46.23  Aligned_cols=23  Identities=39%  Similarity=0.585  Sum_probs=19.5

Q ss_pred             CCeEEEEECCCCchHHHHH-HHHH
Q psy16345         46 PGELLAVMGPSGCGKTTLL-NCLA   68 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl-~~l~   68 (121)
                      +|.++.+.|+.|+||||++ +.+.
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~   25 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVE   25 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999997 5543

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=96.76  E-value=0.00073  Score=52.03  Aligned_cols=23  Identities=22%  Similarity=0.314  Sum_probs=19.7

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|.+++|||||++.|++..
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~~   24 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLVD   24 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47999999999999999999853

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.76  E-value=0.00067  Score=52.61  Aligned_cols=36  Identities=25%  Similarity=0.385  Sum_probs=29.4

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      -|+.+.--+++|+++.|.|++|+|||||+..++...
T Consensus       189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            355555568999999999999999999998887643

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=96.76  E-value=0.00089  Score=50.60  Aligned_cols=33  Identities=21%  Similarity=0.256  Sum_probs=26.8

Q ss_pred             EeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         38 KDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        38 ~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ..+.++++---.++|+|.+++|||||++.|++-
T Consensus       149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~  181 (342)
T 1lnz_A          149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA  181 (342)
T ss_dssp             EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred             hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence            455666666556899999999999999999864

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.76  E-value=0.0011  Score=48.66  Aligned_cols=26  Identities=31%  Similarity=0.379  Sum_probs=22.7

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      +-.++++|.+|+|||||++.|.|...
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~~~~~  145 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLAKKNI  145 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CceEEEEecCCCchHHHHHHHhcCce
Confidence            34789999999999999999998653

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.75  E-value=0.001  Score=46.64  Aligned_cols=26  Identities=35%  Similarity=0.618  Sum_probs=22.6

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      |.+++|=|.-||||||+++.|+..+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            56899999999999999999987553

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.75  E-value=0.00092  Score=50.40  Aligned_cols=26  Identities=23%  Similarity=0.445  Sum_probs=22.3

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +.-+++|+|+.|+|||||+..|+..+
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999997643

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.71  E-value=0.0011  Score=50.20  Aligned_cols=28  Identities=29%  Similarity=0.447  Sum_probs=25.0

Q ss_pred             EEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         42 GVVKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        42 l~i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      --+++|.++.|.||.|+|||||...++.
T Consensus       118 GGi~~gsviLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          118 GHRYASGMVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4678899999999999999999998874

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.70  E-value=0.00095  Score=47.99  Aligned_cols=26  Identities=31%  Similarity=0.391  Sum_probs=22.2

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .+...+.|.||+|+|||||++.++..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34457889999999999999999875

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=95.72  E-value=0.00026  Score=48.44  Aligned_cols=22  Identities=32%  Similarity=0.338  Sum_probs=19.4

Q ss_pred             eEEEEECCCCchHHHHHHHHHc
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      =.++|+|+.|+|||||++.+.+
T Consensus        31 ~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           31 IKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            4689999999999999988865

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=96.69  E-value=0.0003  Score=58.43  Aligned_cols=30  Identities=20%  Similarity=0.352  Sum_probs=25.0

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHHcCCCC
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLAGRVKL   73 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~~   73 (121)
                      +..|+.+.|+||+||||||++.+++....+
T Consensus       106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~  135 (773)
T 2xau_A          106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEM  135 (773)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred             HhCCCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence            467899999999999999999988665433

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.67  E-value=0.00098  Score=48.17  Aligned_cols=25  Identities=32%  Similarity=0.530  Sum_probs=21.8

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +..+.|.||+|+||||+++.++..+
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            4567899999999999999998765

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.67  E-value=0.00096  Score=50.08  Aligned_cols=26  Identities=35%  Similarity=0.539  Sum_probs=22.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ++..+.|.||+|+||||+.++|+..+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            45568899999999999999999765

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.66  E-value=0.0012  Score=49.16  Aligned_cols=27  Identities=30%  Similarity=0.525  Sum_probs=23.4

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+..-+.|.||.|+|||+|++.++...
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHc
Confidence            455678899999999999999999865

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=96.66  E-value=0.0012  Score=53.88  Aligned_cols=26  Identities=35%  Similarity=0.391  Sum_probs=23.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +|.++.|+|.+||||||+.+.|+..+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999998644

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=96.65  E-value=0.00087  Score=50.97  Aligned_cols=25  Identities=28%  Similarity=0.442  Sum_probs=22.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ++..++++|.+|+|||||++.|.+.
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhh
Confidence            4667999999999999999999985

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=96.64  E-value=0.00063  Score=51.18  Aligned_cols=23  Identities=35%  Similarity=0.622  Sum_probs=21.1

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|..|+|||||++.|.|..
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999853

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.64  E-value=0.0016  Score=46.58  Aligned_cols=28  Identities=18%  Similarity=0.210  Sum_probs=23.7

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCCCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRVKL   73 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~   73 (121)
                      .+.-+.|.||+|+|||+|++.|+.....
T Consensus        28 ~~~~vll~G~~GtGKt~la~~i~~~~~~   55 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIASRLHYLSSR   55 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence            3467889999999999999999987643

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.63  E-value=0.0013  Score=48.72  Aligned_cols=25  Identities=32%  Similarity=0.438  Sum_probs=22.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +.-+.|.||+|+|||+|+++|+...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999998644

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=96.63  E-value=0.00062  Score=47.16  Aligned_cols=21  Identities=43%  Similarity=0.733  Sum_probs=18.2

Q ss_pred             EEEEECCCCchHHHHHHH-HHc
Q psy16345         49 LLAVMGPSGCGKTTLLNC-LAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~-l~g   69 (121)
                      .++|+|+.|+|||||++. +.+
T Consensus        17 ki~v~G~~~~GKSsli~~~~~~   38 (221)
T 3gj0_A           17 KLVLVGDGGTGKTTFVKRHLTG   38 (221)
T ss_dssp             EEEEEECTTSSHHHHHTTBHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            478999999999999998 544

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.62  E-value=0.0011  Score=52.82  Aligned_cols=28  Identities=14%  Similarity=0.074  Sum_probs=24.7

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      +.|.++.|+|.+||||||+.+.|+..+.
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence            5778999999999999999999987554

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.62  E-value=0.0013  Score=47.33  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=19.5

Q ss_pred             eEEEEECCCCchHHHHHHHHHc
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      -..||+|+.||||||+.+.|+.
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.62  E-value=0.0012  Score=49.22  Aligned_cols=28  Identities=25%  Similarity=0.412  Sum_probs=24.0

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      .++..+.|.||.|+|||||++.++..+.
T Consensus        68 ~~~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           68 IAGRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3467899999999999999999987654

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.61  E-value=0.0013  Score=49.42  Aligned_cols=27  Identities=33%  Similarity=0.682  Sum_probs=23.4

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+...+.|.||+|+|||||+++|+...
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            356678999999999999999998754

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=96.60  E-value=0.0013  Score=52.96  Aligned_cols=26  Identities=19%  Similarity=0.263  Sum_probs=22.9

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+.++.|.|.+||||||+.+.|...+
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L  420 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTL  420 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHh
Confidence            56789999999999999999998654

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.59  E-value=0.0013  Score=49.07  Aligned_cols=26  Identities=19%  Similarity=0.209  Sum_probs=22.5

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+..+.|.||.|+|||||++.++..+
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999998753

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=96.59  E-value=0.00096  Score=53.38  Aligned_cols=25  Identities=24%  Similarity=0.392  Sum_probs=22.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      --.++|+|..|+|||||++.|.|..
T Consensus        65 ~~~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           65 KPMVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCc
Confidence            3589999999999999999999853

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.57  E-value=0.0015  Score=48.37  Aligned_cols=26  Identities=31%  Similarity=0.556  Sum_probs=22.5

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +..-+.|.||.|+|||+|+++++...
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            45568899999999999999998754

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.57  E-value=0.0012  Score=48.53  Aligned_cols=26  Identities=19%  Similarity=0.267  Sum_probs=21.7

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .-..+.|.||.|+|||+|.++|+..+
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            33567788999999999999999754

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=96.55  E-value=0.00085  Score=52.65  Aligned_cols=25  Identities=32%  Similarity=0.554  Sum_probs=21.8

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .|=.++|+|+.|+|||||++.|++.
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            4455999999999999999999874

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.55  E-value=0.0013  Score=51.41  Aligned_cols=37  Identities=35%  Similarity=0.615  Sum_probs=27.5

Q ss_pred             EeeEEEEeCCeE--EEEECCCCchHHHHHHHHHcCCCCC
Q psy16345         38 KDVSGVVKPGEL--LAVMGPSGCGKTTLLNCLAGRVKLD   74 (121)
Q Consensus        38 ~~vsl~i~~G~~--~~liG~nGsGKSTLl~~l~gl~~~~   74 (121)
                      +.+.-.+..|.+  +.|.||+|+|||||+++|+......
T Consensus        39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~   77 (447)
T 3pvs_A           39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD   77 (447)
T ss_dssp             SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            333334445554  8899999999999999999876543

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.55  E-value=0.0016  Score=49.73  Aligned_cols=27  Identities=30%  Similarity=0.507  Sum_probs=24.0

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      -+++|+++.|.|++|+|||||+..++.
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~   96 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVA   96 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence            478999999999999999999877654

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=96.54  E-value=0.0015  Score=50.05  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=21.0

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++++|..|+|||||++.|++..
T Consensus        10 ~I~vvG~~~~GKSTLi~~L~~~~   32 (403)
T 3sjy_A           10 NIGVVGHVDHGKTTLVQAITGIW   32 (403)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcc
Confidence            68999999999999999999853

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.53  E-value=0.00074  Score=52.60  Aligned_cols=25  Identities=32%  Similarity=0.481  Sum_probs=22.7

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      .+++|+|++|+||||++..|++.+.
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5999999999999999999998654

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=96.52  E-value=0.00017  Score=49.27  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|+.|+|||||++.+.+-
T Consensus        35 ki~vvG~~~~GKSsli~~l~~~   56 (199)
T 3l0i_B           35 KLLLIGDSGVGKSCLLLRFADD   56 (199)
T ss_dssp             EEEEECCTTSCCTTTTTSSBCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999988864

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.52  E-value=0.0017  Score=47.50  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=21.7

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      |..+.|.|+.|+|||||++.++..
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHH
Confidence            579999999999999999998764

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.49  E-value=0.0015  Score=48.24  Aligned_cols=24  Identities=38%  Similarity=0.607  Sum_probs=21.1

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ..+.|.||+|+|||||++.++...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHh
Confidence            357899999999999999998754

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=96.49  E-value=0.00099  Score=50.70  Aligned_cols=25  Identities=28%  Similarity=0.450  Sum_probs=22.8

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ++..++++|.+|+|||||++.|.+.
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~~~  183 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMIKE  183 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred             ccceEEEecCCCCChhHHHHHHHhh
Confidence            5678999999999999999999885

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.0016  Score=49.95  Aligned_cols=36  Identities=33%  Similarity=0.481  Sum_probs=28.5

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCC-----------CCccEEEECCEe
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVK-----------LDSGVIRLNKER   84 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~-----------~~~G~i~~~g~~   84 (121)
                      .+||+|...+|||||++.|++--.           |..|.+.+.|..
T Consensus        74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~  120 (376)
T 4a9a_A           74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK  120 (376)
T ss_dssp             EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE
Confidence            689999999999999999998532           334777777654

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.46  E-value=0.0015  Score=48.10  Aligned_cols=29  Identities=28%  Similarity=0.359  Sum_probs=24.2

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      +..|.-+.|.||.|+|||+|++.++..+.
T Consensus        43 l~~~~~vll~G~pGtGKT~la~~la~~~~   71 (331)
T 2r44_A           43 ICTGGHILLEGVPGLAKTLSVNTLAKTMD   71 (331)
T ss_dssp             HHHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred             HHcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            33467789999999999999999998554

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.46  E-value=0.0016  Score=49.06  Aligned_cols=25  Identities=32%  Similarity=0.599  Sum_probs=21.9

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ...+.|.||+|+||||+.+.|+..+
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l   96 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHh
Confidence            4468899999999999999999765

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=96.45  E-value=0.0044  Score=46.43  Aligned_cols=37  Identities=22%  Similarity=0.098  Sum_probs=28.1

Q ss_pred             CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        32 ~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .....+|..-.+ -.|.-+.|.|+||+||||+.-.+..
T Consensus       133 a~~~~~H~~~v~-~~g~gvli~G~sG~GKStlal~l~~  169 (312)
T 1knx_A          133 ATVAQIHGVLLE-VFGVGVLLTGRSGIGKSECALDLIN  169 (312)
T ss_dssp             CCCEEEEEEEEE-ETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             hhcceeEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            344567775444 5688899999999999999877654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=96.44  E-value=0.0018  Score=50.04  Aligned_cols=24  Identities=25%  Similarity=0.537  Sum_probs=21.7

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      -.++|+|.+|+|||||++.+.|-.
T Consensus       176 ~ki~lvG~~nvGKSSLin~l~~~~  199 (436)
T 2hjg_A          176 IQFCLIGRPNVGKSSLVNAMLGEE  199 (436)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTST
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCCC
Confidence            378999999999999999999864

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=96.44  E-value=0.0013  Score=53.29  Aligned_cols=25  Identities=36%  Similarity=0.499  Sum_probs=22.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      --+++|+|+.++|||||++.|.|..
T Consensus        38 ~~~VaivG~pnvGKStLiN~L~g~~   62 (592)
T 1f5n_A           38 MVVVAIVGLYRTGKSYLMNKLAGKK   62 (592)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CcEEEEECCCCCCHHHHHHhHcCCC
Confidence            3568999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	121
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	1e-22
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	5e-21
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	7e-21
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	2e-20
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	4e-20
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	5e-20
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	5e-20
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	6e-20
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	7e-20
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	2e-18
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	6e-18
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	8e-18
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	1e-17
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	1e-17
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	1e-17
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	2e-17
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	2e-17
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	4e-17
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	2e-16
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	2e-16
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	5e-11
d1znwa1	182	c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu	4e-05
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	5e-05
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	7e-05
d1s96a_	205	c.37.1.1 (A:) Guanylate kinase {Escherichia coli [	1e-04
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	1e-04
d1nlfa_	274	c.37.1.11 (A:) Hexameric replicative helicase repA	4e-04
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	5e-04
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	5e-04
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	8e-04
d1cr2a_	277	c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),	0.001
d1gkya_	186	c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac	0.001
d1kgda_	178	c.37.1.1 (A:) Guanylate kinase-like domain of Cask	0.001
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	0.001
d1lvga_	190	c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculu	0.002
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	0.002
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	0.002
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	0.002
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	0.002
d1n0wa_	242	c.37.1.11 (A:) DNA repair protein Rad51, catalytic	0.003
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	0.003
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	0.003
d1f5na2	277	c.37.1.8 (A:7-283) Interferon-induced guanylate-bi	0.004

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 86.4 bits (214), Expect = 1e-22
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 21  ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
           E+    L+        +  ++  +K GE L ++GPSGCGKTT L  +AG  +   G I  
Sbjct: 6   EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 65

Query: 81  NKERLN--KRWKRKICYVLQQDIFFPELTLRQTLE 113
               +       R I  V Q    +P +T+ + + 
Sbjct: 66  GDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIA 100

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 81.5 bits (201), Expect = 5e-21
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           L    LSV  DK P+L+ ++  ++ G ++   GP+G GKTTLL  ++  +K   G I  N
Sbjct: 3   LEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYN 61

Query: 82  KERLNKRWKRKICYVLQQDIFFPELTLRQTLEV 114
                 + K KI ++ ++ I   ++++   L+ 
Sbjct: 62  GVP-ITKVKGKIFFLPEEIIVPRKISVEDYLKA 93

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 81.9 bits (202), Expect = 7e-21
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           L    +     +   L  VS  V  G++  ++GP+G GK+TL+N + G +K D G +   
Sbjct: 5   LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 64

Query: 82  KERLN-----KRWKRKICYVLQQDIFFPELTLRQTLEV 114
            + +      + +   I    Q      E+T+ + L +
Sbjct: 65  NKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLI 102

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 81.0 bits (200), Expect = 2e-20
 Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 5/104 (4%)

Query: 14  PLSHRPLELVFSGLSVTL--DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV 71
           P+  +   +    +S     ++ PILKD++  ++ GE +A +G SG GK+TL+N +    
Sbjct: 9   PIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68

Query: 72  KLDSGVIRLNKERLNK---RWKRKICYVLQQDIFFPELTLRQTL 112
            + SG I ++   +        R    ++QQD      T+++ +
Sbjct: 69  DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI 112

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.3 bits (198), Expect = 4e-20
 Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 9/76 (11%)

Query: 29  VTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR 88
           + L   P+LK+++  ++ GE+LA+ G +G GKT+LL  + G ++   G+I+ +       
Sbjct: 44  LCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS------- 96

Query: 89  WKRKICYVLQQDIFFP 104
              ++ +  Q     P
Sbjct: 97  --GRVSFCSQFSWIMP 110

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 79.9 bits (197), Expect = 5e-20
 Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 17/109 (15%)

Query: 21  ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
           +L    L        +LK VS   + G++++++G SG GK+T L C+    K   G I +
Sbjct: 2   KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV 61

Query: 81  NKERLN-----------------KRWKRKICYVLQQDIFFPELTLRQTL 112
           N + +N                 +  + ++  V Q    +  +T+ + +
Sbjct: 62  NGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV 110

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 79.5 bits (196), Expect = 5e-20
 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 32  DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----K 87
           D   IL+D+S   +P  ++A  GPSG GK+T+ + L    +  +G I ++ + ++    +
Sbjct: 13  DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE 72

Query: 88  RWKRKICYVLQQDIFFP 104
            W+ +I +V Q      
Sbjct: 73  NWRSQIGFVSQDSAIMA 89

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 79.3 bits (195), Expect = 6e-20
 Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           +V   L   + K+ ILK +S  ++ GE+  ++GP+G GKTT L  ++  +K  SG++ + 
Sbjct: 3   VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 62

Query: 82  ---KERLNKRWKRKICYVLQQDIFFPELTLRQ 110
                      ++ I Y+ ++   +  +   +
Sbjct: 63  GKNVVEEPHEVRKLISYLPEEAGAYRNMQGIE 94

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 79.4 bits (195), Expect = 7e-20
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 9/99 (9%)

Query: 21  ELVFSGLSVTLD--KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
            ++   +S      K   L +V+  ++ GE   ++GPSG GKTT +  +AG     +G +
Sbjct: 3   RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62

Query: 79  RL-------NKERLNKRWKRKICYVLQQDIFFPELTLRQ 110
                    N + +     RKI  V Q    +P LT  +
Sbjct: 63  YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFE 101

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 75.0 bits (184), Expect = 2e-18
 Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 24  FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE 83
              ++    +  + KD++  +  GE +  +GPSGCGK+TLL  +AG   + SG + + ++
Sbjct: 3   LQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK 62

Query: 84  RLNKRWKRK--ICYVLQQDIFFPELTLRQTL 112
           R+N     +  +  V Q    +P L++ + +
Sbjct: 63  RMNDTPPAERGVGMVFQSYALYPHLSVAENM 93

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (182), Expect = 6e-18
 Identities = 24/106 (22%), Positives = 52/106 (49%), Gaps = 8/106 (7%)

Query: 21  ELVFSGLSVTLDKRP---ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV 77
            + F  +S     RP   +L+ ++  ++PGE+ A++GP+G GK+T+   L    +   G 
Sbjct: 11  LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 70

Query: 78  IRLNKERLN----KRWKRKICYVLQQDIFFPELTLRQTLEVSIADE 119
           + L+ + L     +   R++  V Q+   F   +L++ +   +  +
Sbjct: 71  LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQK 115

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 73.8 bits (181), Expect = 8e-18
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 21  ELVFSGLSVT--LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
           ++ F  +      D   IL +++  +K GE++ ++G SG GK+TL   +      ++G +
Sbjct: 1   DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60

Query: 79  RLNKERLNK----RWKRKICYVLQQDIFFP 104
            ++   L        +R++  VLQ ++   
Sbjct: 61  LIDGHDLALADPNWLRRQVGVVLQDNVLLN 90

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 73.4 bits (180), Expect = 1e-17
 Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 11/103 (10%)

Query: 22  LVFSGLSVTLDKR----PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV 77
           +  S ++    +       L +VS  V  G++  V+G SG GK+TL+ C+    +   G 
Sbjct: 2   IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61

Query: 78  IRLNKERLNK-------RWKRKICYVLQQDIFFPELTLRQTLE 113
           + ++ + L         + +R+I  + Q        T+   + 
Sbjct: 62  VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVA 104

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 73.2 bits (179), Expect = 1e-17
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           +    LS        L ++S  V+ GE   ++GP+G GKT  L  +AG    DSG I L+
Sbjct: 2   IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD 60

Query: 82  KERLNKRWKRKIC--YVLQQDIFFPELTLRQ 110
            + +      K    +V Q    FP + +++
Sbjct: 61  GKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 73.4 bits (180), Expect = 1e-17
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 8/97 (8%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           +    +     +   ++++S  VK GE + ++GPSGCGKTT L  +AG  +   G I + 
Sbjct: 4   VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIG 63

Query: 82  --------KERLNKRWKRKICYVLQQDIFFPELTLRQ 110
                   K        R I  V Q    +P +T+  
Sbjct: 64  DKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYD 100

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 72.6 bits (178), Expect = 2e-17
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 8/88 (9%)

Query: 35  PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-------- 86
             LK+V+  +K GE +++MGPSG GK+T+LN +    K   G + ++  + N        
Sbjct: 19  YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT 78

Query: 87  KRWKRKICYVLQQDIFFPELTLRQTLEV 114
           K  + KI +V QQ    P LT  + +E+
Sbjct: 79  KIRRDKIGFVFQQFNLIPLLTALENVEL 106

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 72.6 bits (178), Expect = 2e-17
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 22  LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
           L    L V       +K +   V  G+++ ++G +G GKTT L+ +AG V+   G I  N
Sbjct: 7   LEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN 66

Query: 82  -----KERLNKRWKRKICYVLQQDIFFPELTLRQTL 112
                 +  +   +  I  V +    FPELT+ + L
Sbjct: 67  GQDITNKPAHVINRMGIALVPEGRRIFPELTVYENL 102

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 72.0 bits (176), Expect = 4e-17
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 27  LSVTLDKRPILKDVSGVV---KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE 83
           L V  +KR  L +    V      +   ++GP+G GK+  L  +AG VK D G +RLN  
Sbjct: 3   LKVRAEKR--LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGA 60

Query: 84  RLN--KRWKRKICYVLQQDIFFPELTLRQ 110
            +      +R I +V Q    FP L++ +
Sbjct: 61  DITPLPPERRGIGFVPQDYALFPHLSVYR 89

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 70.3 bits (172), Expect = 2e-16
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 21  ELVFSGLSVTLDKR--PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
           +L F  ++ T   R  P L++++  +  G+ +A++G SG GK+T+ + +     +D G I
Sbjct: 13  DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 72

Query: 79  RLNKERLN----KRWKRKICYVLQQDIFFP 104
            ++   L        + ++  V Q    F 
Sbjct: 73  LMDGHDLREYTLASLRNQVALVSQNVHLFN 102

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 70.0 bits (171), Expect = 2e-16
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 31  LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---- 86
           + +   L  +SG V+ GE+L ++GP+G GK+TLL  +AG      G I+   + L     
Sbjct: 9   VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSA 67

Query: 87  KRWKRKICYVLQQDIFFPELTLRQTL 112
            +      Y+ QQ        +   L
Sbjct: 68  TKLALHRAYLSQQQTPPFATPVWHYL 93

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 54.6 bits (130), Expect = 5e-11
 Identities = 11/57 (19%), Positives = 22/57 (38%)

Query: 50  LAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPEL 106
           + + G  G GKTTL+  +  R+   +      + R  +  KR    ++  +      
Sbjct: 3   IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIF 59

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.8 bits (89), Expect = 4e-05
 Identities = 12/57 (21%), Positives = 21/57 (36%)

Query: 47  GELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFF 103
           G ++ + GPS  GK+T++ CL  R+      +              + Y       F
Sbjct: 2   GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRF 58

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 38.5 bits (88), Expect = 5e-05
 Identities = 11/69 (15%), Positives = 20/69 (28%)

Query: 45  KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFP 104
               +  +MG SG GK+ + + +A ++            R N         +   D    
Sbjct: 4   HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPW 63

Query: 105 ELTLRQTLE 113
              L     
Sbjct: 64  LQALNDAAF 72

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (87), Expect = 1e-04
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 47 GELLAVMGPSGCGKTTLLNCLAGRVKLD 74
          G L  V  PSG GK++L+  L     L 
Sbjct: 2  GTLYIVSAPSGAGKSSLIQALLKTQPLY 29

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 37.2 bits (85), Expect = 1e-04
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 5/38 (13%)

Query: 47 GELLAVMGPSGCGKTTLLNCLAGR-----VKLDSGVIR 79
          G +L + G  G GK+T+   LA       V   S  + 
Sbjct: 4  GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 41

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

 Score = 36.2 bits (82), Expect = 4e-04
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 8/58 (13%)

Query: 16 SHRPLELV--FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV 71
          +H+P+ ++  F+         P L  V   +  G + A++ P G GK+ L   LA ++
Sbjct: 2  THKPINILEAFAA------APPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQI 53

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 35.8 bits (81), Expect = 5e-04
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 47 GELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRW 89
            ++ + G S  GK+ ++ CL     L    +    + L +  
Sbjct: 3  TRMIILNGGSSAGKSGIVRCLQSV--LPEPWLAFGVDSLIEAM 43

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 5e-04
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 52 VMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICY 95
          + GP G GKTTL++  +  +K     +        ++  R+I +
Sbjct: 6  LTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGF 49

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 35.1 bits (79), Expect = 8e-04
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 6/30 (20%)

Query: 41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70
          SG V      A++G    GK+TLLN L G 
Sbjct: 5  SGFV------AIVGKPNVGKSTLLNNLLGV 28

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

 Score = 34.6 bits (78), Expect = 0.001
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA 68
          + D +   + GE++ V   SG GK+T +   A
Sbjct: 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.5 bits (78), Expect = 0.001
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 49 LLAVMGPSGCGKTTLLNCLAGR 70
           + + GPSG GK+TLL  L   
Sbjct: 3  PIVISGPSGTGKSTLLKKLFAE 24

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.001
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 49 LLAVMGPSGCGKTTLLNCLAGR 70
           L ++G  G G+  + N L  +
Sbjct: 5  TLVLLGAHGVGRRHIKNTLITK 26

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 50  LAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIF 102
           +AV G +G GK++ +N L G    + G  +     +           +   +F
Sbjct: 59  VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVF 111

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.2 bits (77), Expect = 0.002
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 49 LLAVMGPSGCGKTTLLNCLA 68
           + + GPSG GK+TLL  L 
Sbjct: 2  PVVLSGPSGAGKSTLLKKLF 21

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 34.0 bits (76), Expect = 0.002
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 50 LAVMGPSGCGKTTLLNCLAGR 70
          + + G    GK++LLN LAGR
Sbjct: 4  VVIAGRPNAGKSSLLNALAGR 24

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 34.0 bits (76), Expect = 0.002
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 51  AVMGPSGCGKTTLLNCLAG--RVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFP 104
           A+ G S  GK++ +N L     +   S      +         ++ +V      F 
Sbjct: 27  ALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFA 82

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 33.9 bits (76), Expect = 0.002
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 51 AVMGPSGCGKTTLLNCLAGR 70
          A++G    GK+TLLN L G+
Sbjct: 9  AIVGRPNVGKSTLLNKLLGQ 28

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.0 bits (76), Expect = 0.002
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 51 AVMGPSGCGKTTLLNCLAGR 70
           ++G    GK+TL N L  +
Sbjct: 4  LIVGRPNVGKSTLFNKLVKK 23

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (75), Expect = 0.003
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGRV 71
           G ++ G +  + G    GKT + + LA   
Sbjct: 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTC 47

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.5 bits (75), Expect = 0.003
 Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 50 LAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYV 96
          + + GP   GKT+LL  L     +   V+              +  V
Sbjct: 6  IIIAGPQNSGKTSLLTLLTTD-SVRPTVVSQEPLSAADYDGSGVTLV 51

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 33.5 bits (75), Expect = 0.003
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 49 LLAVMGPSGCGKTTLLNCLAGR 70
          L  + GP+G GK+T    LA +
Sbjct: 4  LYIITGPAGVGKSTTCKRLAAQ 25

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (75), Expect = 0.004
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70
          LK +S + +P  ++A++G    GK+ L+N LAG+
Sbjct: 22 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGK 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	121
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.98
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.98
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.98
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.97
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.97
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.97
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.97
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.97
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.97
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.97
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.96
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.96
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.96
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.91
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.89
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.13
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.68
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.51
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	98.43
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.29
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.28
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.28
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.26
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.24
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.23
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.22
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.16
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.16
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.15
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.11
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.11
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.1
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.09
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.07
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.05
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.02
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.02
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.0
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.0
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.97
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.97
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.94
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.89
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.84
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.84
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.83
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.82
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.82
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.79
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.79
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.78
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.78
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.78
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.77
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.76
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.76
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.74
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.73
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.72
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.72
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.72
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.72
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.71
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.71
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.71
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.7
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.7
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.69
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.67
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.66
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.65
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.64
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.64
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.62
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.61
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.61
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.6
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.59
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.59
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.58
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.57
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.56
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.56
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.55
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.53
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.51
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	97.5
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.49
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.48
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.48
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.48
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.48
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	97.45
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.45
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.45
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.44
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.44
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.43
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.39
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.36
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.36
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.35
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.35
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.35
d1okkd2	207	GTPase domain of the signal recognition particle r	97.34
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.33
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.33
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	97.32
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	97.32
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.31
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.31
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.31
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.3
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.3
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.29
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	97.27
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.27
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.26
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.26
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.25
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.25
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.25
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.24
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.21
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	97.21
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.2
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.19
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.19
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.19
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	97.17
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.17
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.16
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.14
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	97.13
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.13
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.13
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.12
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.11
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.11
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.1
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.1
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.09
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	97.08
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.08
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.06
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	97.06
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.06
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	97.05
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	97.05
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	97.05
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	97.05
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.05
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	97.05
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	97.02
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.99
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.98
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.98
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.97
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.97
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.96
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.94
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.94
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.94
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.93
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.91
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.91
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.9
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.9
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.9
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.89
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.88
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.87
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.86
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.85
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.84
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.83
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.83
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.83
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.82
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.82
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.81
d1xpua3	289	Transcription termination factor Rho, ATPase domai	96.8
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.8
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.78
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.78
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.76
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.75
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.75
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.74
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	96.74
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.73
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.72
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	96.68
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.68
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.68
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.66
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.65
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.62
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.61
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.61
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	96.59
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.57
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.56
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.55
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.52
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	96.47
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	96.46
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.39
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	96.29
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.28
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.27
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	96.14
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.04
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	96.01
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.01
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.99
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	95.98
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.92
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.77
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.72
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.71
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.65
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.62
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.48
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	95.46
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.41
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.37
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.15
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.1
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.99
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.96
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.81
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	94.81
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.73
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.72
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	94.54
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	94.52
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.52
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	94.5
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	94.22
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.18
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	94.15
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.07
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.0
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	93.91
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	93.89
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.71
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.6
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	93.57
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	93.47
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	93.42
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	93.17
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.16
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	93.08
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	93.0
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.98
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	92.92
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.89
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	92.84
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	92.75
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.37
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	91.05
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	90.62
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	90.52
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	89.94
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	88.34
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	87.59
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	86.95
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	86.45
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	85.7
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	85.16
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	84.73
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	82.55
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	82.29
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	81.82

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=3.3e-34  Score=207.65  Aligned_cols=98  Identities=27%  Similarity=0.484  Sum_probs=85.9

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEe
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVL   97 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~   97 (121)
                      ..|+++||+++|++..+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.+  ..++++||||
T Consensus         5 ~~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~   84 (239)
T d1v43a3           5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF   84 (239)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred             CeEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEe
Confidence            34999999999999999999999999999999999999999999999999999999999999999863  4567899999


Q ss_pred             eCCCCCCCCCHHHHHhhccc
Q psy16345         98 QQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        98 Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      |++.+|+++||+||+.++..
T Consensus        85 Q~~~l~~~ltv~enl~~~~~  104 (239)
T d1v43a3          85 QSYAVWPHMTVYENIAFPLK  104 (239)
T ss_dssp             C------CCCHHHHHHTTCC
T ss_pred             echhhcccchHHHHHHHHHH
Confidence            99999999999999998763

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.9e-34  Score=207.21  Aligned_cols=96  Identities=26%  Similarity=0.527  Sum_probs=76.9

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ   99 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~   99 (121)
                      |+++||+++|++.++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..  ..++.+|||||+
T Consensus         1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~   80 (232)
T d2awna2           1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQS   80 (232)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSS
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccc
Confidence            689999999999999999999999999999999999999999999999999999999999999863  456789999999


Q ss_pred             CCCCCCCCHHHHHhhccc
Q psy16345        100 DIFFPELTLRQTLEVSIA  117 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~~~  117 (121)
                      +.+++++||+||+.++..
T Consensus        81 ~~l~~~~tv~eni~~~~~   98 (232)
T d2awna2          81 YALYPHLSVAENMSFGLK   98 (232)
T ss_dssp             CCC---------------
T ss_pred             cccccchhHHHHHHHHHH
Confidence            999999999999998753

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=9.5e-34  Score=204.07  Aligned_cols=95  Identities=31%  Similarity=0.491  Sum_probs=88.8

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEee
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQ   98 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q   98 (121)
                      +|+++||+++|++ .+|++|||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.+  ..++.+|||||
T Consensus         1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q   79 (229)
T d3d31a2           1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ   79 (229)
T ss_dssp             CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred             CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeecc
Confidence            4899999999986 58999999999999999999999999999999999999999999999999963  44678999999


Q ss_pred             CCCCCCCCCHHHHHhhcc
Q psy16345         99 QDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.+|+++||+||+.++.
T Consensus        80 ~~~l~~~~tV~enl~~~~   97 (229)
T d3d31a2          80 NYSLFPHMNVKKNLEFGM   97 (229)
T ss_dssp             TCCCCTTSCHHHHHHHHH
T ss_pred             ccccCccccHHHHHHHHH
Confidence            999999999999999876

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1e-33  Score=205.30  Aligned_cols=97  Identities=26%  Similarity=0.430  Sum_probs=89.4

Q ss_pred             EEEEeeeEEEc--CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhcc
Q psy16345         21 ELVFSGLSVTL--DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKR   91 (121)
Q Consensus        21 ~i~~~~l~~~~--~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~   91 (121)
                      .|+++||++.|  ++..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..       .+++
T Consensus         3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr   82 (242)
T d1oxxk2           3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR   82 (242)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred             EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence            48999999999  45689999999999999999999999999999999999999999999999998741       3467


Q ss_pred             cEEEEeeCCCCCCCCCHHHHHhhccc
Q psy16345         92 KICYVLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        92 ~i~~v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      ++|||||++.+||++||+||+.+++.
T Consensus        83 ~ig~vfQ~~~L~p~ltv~eni~~~l~  108 (242)
T d1oxxk2          83 KIGMVFQTWALYPNLTAFENIAFPLT  108 (242)
T ss_dssp             CEEEEETTSCCCTTSCHHHHHHGGGT
T ss_pred             cceEEeccccccccccHHHHhhhhhH
Confidence            89999999999999999999999874

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=2.1e-33  Score=203.55  Aligned_cols=96  Identities=26%  Similarity=0.471  Sum_probs=89.8

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hhccc
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RWKRK   92 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~~~~   92 (121)
                      .|+++||++.|++.++|++|||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..        ..++.
T Consensus         3 ~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~   82 (240)
T d1g2912           3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD   82 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred             cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccccc
Confidence            5899999999999999999999999999999999999999999999999999999999999998741        23578


Q ss_pred             EEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         93 ICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        93 i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +|||||++.+++++||+||+.++.
T Consensus        83 ig~v~Q~~~L~~~ltV~eni~~~~  106 (240)
T d1g2912          83 IAMVFQSYALYPHMTVYDNIAFPL  106 (240)
T ss_dssp             EEEECSCCCCCTTSCHHHHHHHHH
T ss_pred             ceecccchhhcchhhhhHhhhhhH
Confidence            999999999999999999999875

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.98  E-value=2.6e-32  Score=197.86  Aligned_cols=98  Identities=28%  Similarity=0.415  Sum_probs=90.7

Q ss_pred             ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccE
Q psy16345         19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKI   93 (121)
Q Consensus        19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i   93 (121)
                      .++|+++||+++|++..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..     ..+..+
T Consensus         4 d~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi   83 (240)
T d1ji0a_           4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI   83 (240)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred             ceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcc
Confidence            457999999999999999999999999999999999999999999999999999999999999999862     234569


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +|+||++.+|+++||+||+.++.
T Consensus        84 ~~~~q~~~l~~~ltv~en~~~~~  106 (240)
T d1ji0a_          84 ALVPEGRRIFPELTVYENLMMGA  106 (240)
T ss_dssp             EEECSSCCCCTTSBHHHHHHGGG
T ss_pred             cccCcccccCCcccHHHHHHHHH
Confidence            99999999999999999998865

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.98  E-value=1e-32  Score=198.83  Aligned_cols=96  Identities=30%  Similarity=0.460  Sum_probs=86.6

Q ss_pred             EEEEeeeEEEcCCc----ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h----
Q psy16345         21 ELVFSGLSVTLDKR----PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R----   88 (121)
Q Consensus        21 ~i~~~~l~~~~~~~----~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~----   88 (121)
                      +|+++||++.|+..    .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..    +    
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~   80 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI   80 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence            48999999999542    47999999999999999999999999999999999999999999999999852    1    


Q ss_pred             hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         89 WKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      +++.+|||||++.+++++||+||+.++.
T Consensus        81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~  108 (230)
T d1l2ta_          81 RRDKIGFVFQQFNLIPLLTALENVELPL  108 (230)
T ss_dssp             HHHHEEEECTTCCCCTTSCHHHHHHHHH
T ss_pred             hcceEEEEecchhhCcCccHHHHHhHHH
Confidence            2456999999999999999999999865

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=7.3e-33  Score=200.66  Aligned_cols=96  Identities=22%  Similarity=0.399  Sum_probs=87.8

Q ss_pred             EEEEeeeEEEcCCc----ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hh
Q psy16345         21 ELVFSGLSVTLDKR----PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RW   89 (121)
Q Consensus        21 ~i~~~~l~~~~~~~----~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~   89 (121)
                      +|+++||++.|+..    .+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..       .+
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~   80 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA   80 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence            48999999999653    58999999999999999999999999999999999999999999999999852       34


Q ss_pred             cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         90 KRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |+++|||||++.+++.+||+||+.+++
T Consensus        81 rr~ig~VfQ~~~l~~~~tv~eni~~~l  107 (240)
T d3dhwc1          81 RRQIGMIFQHFNLLSSRTVFGNVALPL  107 (240)
T ss_dssp             HHHEEECCSSCCCCTTSBHHHHHHHHH
T ss_pred             hccccccccccccCCCccHHHHHHHHH
Confidence            578999999999999999999999865

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.97  E-value=3.7e-32  Score=198.86  Aligned_cols=96  Identities=24%  Similarity=0.398  Sum_probs=89.3

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------------
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------------   87 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------------   87 (121)
                      .|+++||+++|++..+|++|||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..             
T Consensus         2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~   81 (258)
T d1b0ua_           2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK   81 (258)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred             eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccH
Confidence            3899999999999999999999999999999999999999999999999999999999999998741             


Q ss_pred             ----hhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345         88 ----RWKRKICYVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        88 ----~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                          .+++++|||||++.+++.+||+||+.++.
T Consensus        82 ~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~  114 (258)
T d1b0ua_          82 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP  114 (258)
T ss_dssp             HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred             hHHHHHhcceEEEEechhhccchhcchhhhhhH
Confidence                35678999999999999999999998763

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=3.8e-32  Score=197.06  Aligned_cols=97  Identities=20%  Similarity=0.424  Sum_probs=88.7

Q ss_pred             EEEEeeeEEEcC--CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345         21 ELVFSGLSVTLD--KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~--~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~   94 (121)
                      .|+++||+|+|+  .+++|++|||+|++|+++||+||||||||||+++|+|+++|++|+|.++|+++.    ..++++++
T Consensus         1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~   80 (241)
T d2pmka1           1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG   80 (241)
T ss_dssp             EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred             CeEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEE
Confidence            378999999994  467999999999999999999999999999999999999999999999999986    35788999


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcccC
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSIAD  118 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~~~  118 (121)
                      ||+|++.+|+. |++||+.++.+.
T Consensus        81 ~v~Q~~~lf~~-Ti~eNi~~~~~~  103 (241)
T d2pmka1          81 VVLQDNVLLNR-SIIDNISLANPG  103 (241)
T ss_dssp             EECSSCCCTTS-BHHHHHCTTSTT
T ss_pred             EEecccccCCc-cccccccccCcc
Confidence            99999998865 999999998754

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.97  E-value=1.4e-32  Score=199.52  Aligned_cols=96  Identities=26%  Similarity=0.500  Sum_probs=88.6

Q ss_pred             EEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345         21 ELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY   95 (121)
Q Consensus        21 ~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~   95 (121)
                      +|+++||+|+|++ +++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++..    .++++++|
T Consensus         1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~   80 (242)
T d1mv5a_           1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF   80 (242)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred             CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence            4899999999954 689999999999999999999999999999999999999999999999999863    57889999


Q ss_pred             EeeCCCCCCCCCHHHHHhhccc
Q psy16345         96 VLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      |+|++.+|+. |++||+.++..
T Consensus        81 v~Q~~~lf~~-ti~eNi~~~~~  101 (242)
T d1mv5a_          81 VSQDSAIMAG-TIRENLTYGLE  101 (242)
T ss_dssp             ECCSSCCCCE-EHHHHTTSCTT
T ss_pred             EccccccCCc-chhhheecccc
Confidence            9999999987 99999988753

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=2.5e-32  Score=199.32  Aligned_cols=97  Identities=24%  Similarity=0.361  Sum_probs=90.0

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKIC   94 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~   94 (121)
                      .+|+++||+++|++..+|++|||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++..     ..+..++
T Consensus         3 ~iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~   82 (254)
T d1g6ha_           3 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV   82 (254)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred             ceEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCC
Confidence            36999999999999999999999999999999999999999999999999999999999999999862     2345699


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~  116 (121)
                      |+||++.+++++||+||+.++.
T Consensus        83 ~v~Q~~~~~~~ltv~enl~~~~  104 (254)
T d1g6ha_          83 RTFQTPQPLKEMTVLENLLIGE  104 (254)
T ss_dssp             ECCCCCGGGGGSBHHHHHHGGG
T ss_pred             ccCCccccCCCCeeeeeeeehh
Confidence            9999999999999999998864

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=1.3e-31  Score=193.86  Aligned_cols=95  Identities=24%  Similarity=0.422  Sum_probs=89.6

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEEee
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYVLQ   98 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v~Q   98 (121)
                      |+++||+++|+++++|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.+   ..++.++|+||
T Consensus         3 I~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq   82 (238)
T d1vpla_           3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPE   82 (238)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECT
T ss_pred             EEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeee
Confidence            789999999999999999999999999999999999999999999999999999999999999863   56788999999


Q ss_pred             CCCCCCCCCHHHHHhhcc
Q psy16345         99 QDIFFPELTLRQTLEVSI  116 (121)
Q Consensus        99 ~~~l~~~ltv~e~l~~~~  116 (121)
                      ++.+++++|+.||+.+..
T Consensus        83 ~~~~~~~ltv~e~l~~~~  100 (238)
T d1vpla_          83 EAGAYRNMQGIEYLRFVA  100 (238)
T ss_dssp             TCCCCTTSBHHHHHHHHH
T ss_pred             ccccCCCccHHHHHHHHH
Confidence            999999999999997654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-31  Score=194.60  Aligned_cols=96  Identities=23%  Similarity=0.416  Sum_probs=88.2

Q ss_pred             EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345         21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI   93 (121)
Q Consensus        21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i   93 (121)
                      .|+++||+|+|++   ..+|++|||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.    +.+++++
T Consensus        11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i   90 (251)
T d1jj7a_          11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQV   90 (251)
T ss_dssp             CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred             eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHh
Confidence            4999999999965   35999999999999999999999999999999999999999999999999986    3577889


Q ss_pred             EEEeeCCCCCCCCCHHHHHhhccc
Q psy16345         94 CYVLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        94 ~~v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      +||+|++.+|+. |++||+.++..
T Consensus        91 ~~v~Q~~~lf~~-tv~eni~~g~~  113 (251)
T d1jj7a_          91 AAVGQEPQVFGR-SLQENIAYGLT  113 (251)
T ss_dssp             EEECSSCCCCSS-BHHHHHHCSCS
T ss_pred             hhccccccccCc-chhhhhhhhhc
Confidence            999999999865 99999999864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.97  E-value=4.5e-31  Score=192.74  Aligned_cols=98  Identities=27%  Similarity=0.464  Sum_probs=89.9

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~   94 (121)
                      .|+++||+|+|++  +++|++|||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.++.    ..+|++++
T Consensus        16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~   95 (255)
T d2hyda1          16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG   95 (255)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred             EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheee
Confidence            4999999999965  57999999999999999999999999999999999999999999999999986    36788999


Q ss_pred             EEeeCCCCCCCCCHHHHHhhcccCc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSIADE  119 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~~~~  119 (121)
                      ||+|++.+|+. |++||+.++.+..
T Consensus        96 ~v~Q~~~lf~~-Ti~eNi~~g~~~~  119 (255)
T d2hyda1          96 LVQQDNILFSD-TVKENILLGRPTA  119 (255)
T ss_dssp             EECSSCCCCSS-BHHHHHGGGCSSC
T ss_pred             eeeccccCCCC-CHHHHHhccCcCC
Confidence            99999998865 9999999987543

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.96  E-value=9.9e-30  Score=185.40  Aligned_cols=96  Identities=22%  Similarity=0.417  Sum_probs=88.2

Q ss_pred             EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345         21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC   94 (121)
Q Consensus        21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~   94 (121)
                      .|+++||+|+|++  .++|++|||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++..    .++++++
T Consensus        13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~   92 (253)
T d3b60a1          13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA   92 (253)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred             EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEE
Confidence            4999999999964  469999999999999999999999999999999999999999999999999863    5788899


Q ss_pred             EEeeCCCCCCCCCHHHHHhhccc
Q psy16345         95 YVLQQDIFFPELTLRQTLEVSIA  117 (121)
Q Consensus        95 ~v~Q~~~l~~~ltv~e~l~~~~~  117 (121)
                      ||+|++.+|.. |+++|+.++..
T Consensus        93 ~v~Q~~~l~~~-ti~~n~~~~~~  114 (253)
T d3b60a1          93 LVSQNVHLFND-TVANNIAYART  114 (253)
T ss_dssp             EECSSCCCCSS-BHHHHHHTTTT
T ss_pred             EEeeccccCCc-chhhhhhhcCc
Confidence            99999998876 99999998753

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.96  E-value=2.7e-29  Score=177.44  Aligned_cols=93  Identities=29%  Similarity=0.456  Sum_probs=85.9

Q ss_pred             EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345         21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD  100 (121)
Q Consensus        21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~  100 (121)
                      .|+++||++.|+ +++|+++||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|+++.+ .+.+++|++|+.
T Consensus         2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-~~~~i~~~~~~~   79 (200)
T d1sgwa_           2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-VKGKIFFLPEEI   79 (200)
T ss_dssp             EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-GGGGEEEECSSC
T ss_pred             eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-hcCcEEEEeecc
Confidence            489999999995 579999999999999999999999999999999999999999999999999864 566899999999


Q ss_pred             CCCCCCCHHHHHhhc
Q psy16345        101 IFFPELTLRQTLEVS  115 (121)
Q Consensus       101 ~l~~~ltv~e~l~~~  115 (121)
                      .++..+|+++++.+.
T Consensus        80 ~~~~~~t~~~~l~~~   94 (200)
T d1sgwa_          80 IVPRKISVEDYLKAV   94 (200)
T ss_dssp             CCCTTSBHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHH
Confidence            888899999998764

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.96  E-value=6.1e-29  Score=179.76  Aligned_cols=92  Identities=27%  Similarity=0.450  Sum_probs=82.7

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ   99 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~   99 (121)
                      +++ ++.++|++..+  ||||++. +|+++|+||||||||||+|+|+|+++|++|+|.++|+++.+  ..+++||||||+
T Consensus         3 l~v-~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~   78 (240)
T d2onka1           3 LKV-RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD   78 (240)
T ss_dssp             EEE-EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred             EEE-EEEEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccc
Confidence            667 57899988654  8999995 68999999999999999999999999999999999999973  456789999999


Q ss_pred             CCCCCCCCHHHHHhhccc
Q psy16345        100 DIFFPELTLRQTLEVSIA  117 (121)
Q Consensus       100 ~~l~~~ltv~e~l~~~~~  117 (121)
                      +.+||++||+||+.|++.
T Consensus        79 ~~l~~~ltV~enl~~~l~   96 (240)
T d2onka1          79 YALFPHLSVYRNIAYGLR   96 (240)
T ss_dssp             CCCCTTSCHHHHHHTTCT
T ss_pred             hhhcccchhhHhhhhhhc
Confidence            999999999999999874

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=3e-25  Score=163.59  Aligned_cols=84  Identities=29%  Similarity=0.583  Sum_probs=74.3

Q ss_pred             EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCC
Q psy16345         22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDI  101 (121)
Q Consensus        22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~  101 (121)
                      +.+++++  |.++++|+||||+|++||++||+||||||||||+++|+|+++|++|.|.++|         +++|++|++.
T Consensus        39 i~~~~~~--~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g---------~i~~v~Q~~~  107 (281)
T d1r0wa_          39 VSFSHLC--LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG---------RVSFCSQFSW  107 (281)
T ss_dssp             -CHHHHH--HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS---------CEEEECSSCC
T ss_pred             EEEEEcC--CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC---------EEEEEecccc
Confidence            4444443  3668999999999999999999999999999999999999999999999987         5899999999


Q ss_pred             CCCCCCHHHHHhhccc
Q psy16345        102 FFPELTLRQTLEVSIA  117 (121)
Q Consensus       102 l~~~ltv~e~l~~~~~  117 (121)
                      +|+. |++||+.++..
T Consensus       108 l~~~-tv~eni~~~~~  122 (281)
T d1r0wa_         108 IMPG-TIKENIIFGVS  122 (281)
T ss_dssp             CCSE-EHHHHHTTTSC
T ss_pred             ccCc-eeecccccccc
Confidence            9876 99999998753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=6.3e-24  Score=152.56  Aligned_cols=94  Identities=27%  Similarity=0.401  Sum_probs=80.0

Q ss_pred             cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345         20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY   95 (121)
Q Consensus        20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~   95 (121)
                      +.++++|++++|    +|++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++..    .++...+|
T Consensus         2 ~il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~   76 (231)
T d1l7vc_           2 IVMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAY   76 (231)
T ss_dssp             EEEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEE
T ss_pred             eEEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhcee
Confidence            468999997654    699999999999999999999999999999999976 578999999998752    45567899


Q ss_pred             EeeCCCCCCCCCHHHHHhhcccC
Q psy16345         96 VLQQDIFFPELTLRQTLEVSIAD  118 (121)
Q Consensus        96 v~Q~~~l~~~ltv~e~l~~~~~~  118 (121)
                      ++|+.......++++++.++..+
T Consensus        77 ~~~~~~~~~~~~v~~~~~~~~~~   99 (231)
T d1l7vc_          77 LSQQQTPPFATPVWHYLTLHQHD   99 (231)
T ss_dssp             ECSCCCCCSSCBHHHHHHHHCSC
T ss_pred             eeccccCCccccHHHHhhhccch
Confidence            99987766667899998876643

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.13  E-value=1.3e-11  Score=82.39  Aligned_cols=37  Identities=24%  Similarity=0.285  Sum_probs=33.1

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL   85 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~   85 (121)
                      .++|+||||||||||+++|+|.+++..|.+...+.+.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~   38 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRD   38 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC-
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcch
Confidence            4799999999999999999999999999999877554

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=3.7e-09  Score=70.10  Aligned_cols=33  Identities=15%  Similarity=0.140  Sum_probs=28.6

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .+++.++++.+| ++.|+|+|||||||+|.+|.-
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred             CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            467788888775 999999999999999999964

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=1.8e-07  Score=60.83  Aligned_cols=23  Identities=52%  Similarity=0.540  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +++|+|++|||||||++.|...+
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            78999999999999999998543

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.28  E-value=2e-07  Score=62.40  Aligned_cols=26  Identities=38%  Similarity=0.859  Sum_probs=23.1

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      |.++.|+||||||||||++.|....+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            88999999999999999999976543

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.28  E-value=2.6e-07  Score=60.41  Aligned_cols=26  Identities=35%  Similarity=0.566  Sum_probs=24.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .|+++.|.|++||||||+.+.|+..+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999999865

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.24  E-value=3.2e-07  Score=64.38  Aligned_cols=57  Identities=25%  Similarity=0.334  Sum_probs=34.2

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEEC---CEeCCh--hh--cccEEEEeeCCCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN---KERLNK--RW--KRKICYVLQQDIF  102 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~---g~~~~~--~~--~~~i~~v~Q~~~l  102 (121)
                      +|+.++++|+||+|||||++.|.+-.....|+|.-.   |+-.+.  ++  -..-+|+.+.|.+
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg~iiDTPG~  157 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF  157 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSS
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCcEEEeCCcc
Confidence            589999999999999999999998766666777532   222221  11  1123677777754

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.23  E-value=3.3e-07  Score=59.68  Aligned_cols=27  Identities=19%  Similarity=0.255  Sum_probs=24.1

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+|-++.|+|++||||||+.+.|+-.+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999999998544

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=7.9e-08  Score=62.90  Aligned_cols=31  Identities=29%  Similarity=0.424  Sum_probs=24.8

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCCCCCccEE
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI   78 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i   78 (121)
                      +.+.|+||+|+|||||++.++..+......+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v   32 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPV   32 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence            3578999999999999999998775544333

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.16  E-value=3.8e-07  Score=64.97  Aligned_cols=29  Identities=21%  Similarity=0.423  Sum_probs=23.2

Q ss_pred             EEEeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +++.++ +.+|+|||||||||+|.+|.-++
T Consensus        20 i~f~~~-lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          20 IGFSDR-VTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             EECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             EeCCCC-eEEEECCCCCcHHHHHHHHHHHh
Confidence            444443 89999999999999999996543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.16  E-value=6e-07  Score=58.52  Aligned_cols=24  Identities=33%  Similarity=0.540  Sum_probs=21.6

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ..++|+|++|||||||.+.|+..+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            568999999999999999998754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=5.6e-07  Score=58.64  Aligned_cols=27  Identities=26%  Similarity=0.471  Sum_probs=23.9

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ..+.++.|+|++||||||+.+.|+..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999998754

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.11  E-value=7.5e-07  Score=65.42  Aligned_cols=28  Identities=18%  Similarity=0.554  Sum_probs=23.4

Q ss_pred             EEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345         41 SGVVKPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        41 sl~i~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      .+++..+.+++|+|+|||||||+|.+|+
T Consensus        19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          19 KVGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            3445556699999999999999999984

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.11  E-value=3.5e-07  Score=60.18  Aligned_cols=25  Identities=28%  Similarity=0.355  Sum_probs=21.4

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      .+++|+|.+|||||||++-|...+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999988876544

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.10  E-value=8.7e-07  Score=57.74  Aligned_cols=27  Identities=26%  Similarity=0.498  Sum_probs=23.9

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +++-.+.|.|++||||||+.+.|+-.+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            567789999999999999999998654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.09  E-value=3.3e-07  Score=64.56  Aligned_cols=35  Identities=29%  Similarity=0.443  Sum_probs=22.8

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEE
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL   80 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~   80 (121)
                      +|..+.++|+||+|||||++.|.+-.....|+|.-
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~  130 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE  130 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence            57889999999999999999999976666677763

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.07  E-value=9e-07  Score=57.49  Aligned_cols=26  Identities=23%  Similarity=0.537  Sum_probs=23.3

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      .+++.|.|++||||||+.+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            56899999999999999999998764

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=9.8e-07  Score=58.52  Aligned_cols=26  Identities=35%  Similarity=0.391  Sum_probs=23.2

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +|-++.|+|++||||||+.+.|+..+
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999998643

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=1.6e-06  Score=59.64  Aligned_cols=25  Identities=40%  Similarity=0.683  Sum_probs=22.4

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .|.++.|+||||+|||||++.|.-.
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhh
Confidence            4889999999999999999988754

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.02  E-value=1.2e-06  Score=58.02  Aligned_cols=23  Identities=43%  Similarity=0.533  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ++||.|++|||||||.+.|.-.+
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l   46 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTL   46 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            78999999999999999997543

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.00  E-value=1.7e-06  Score=55.31  Aligned_cols=32  Identities=22%  Similarity=0.481  Sum_probs=23.5

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCCCCCccEEEECC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNK   82 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g   82 (121)
                      +++.|.|++|||||||.+.|..-.   .|...++.
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~   34 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR   34 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC---CCCEEech
Confidence            578899999999999999875421   24555543

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=1.5e-06  Score=55.42  Aligned_cols=23  Identities=35%  Similarity=0.575  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+.|+|++||||||+.|.|+-.+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998754

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.97  E-value=2.1e-06  Score=55.37  Aligned_cols=24  Identities=38%  Similarity=0.675  Sum_probs=21.5

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++.|.|++||||||+.+.|+..+
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            478999999999999999999754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.97  E-value=2.1e-06  Score=55.98  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=22.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      ..+++|.|++||||||+.+.|+-.+.
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            36899999999999999999976543

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.94  E-value=2.1e-06  Score=55.61  Aligned_cols=22  Identities=41%  Similarity=0.534  Sum_probs=19.2

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .+.|+|++||||||+.+.|+--
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3679999999999999999753

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.89  E-value=2.5e-06  Score=57.08  Aligned_cols=23  Identities=35%  Similarity=0.579  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|+.|+|||||++.|.|.-
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHhcCCC
Confidence            49999999999999999999853

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=4e-06  Score=56.18  Aligned_cols=21  Identities=48%  Similarity=0.786  Sum_probs=18.8

Q ss_pred             EEEECCCCchHHHHHHHHHcC
Q psy16345         50 LAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +.|+||||||||||++.|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            689999999999999998654

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=4.4e-06  Score=56.65  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ++||.|++||||||+.+.|+-.+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999887644

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.83  E-value=4.4e-06  Score=57.06  Aligned_cols=21  Identities=33%  Similarity=0.593  Sum_probs=19.4

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      +++|+|+.|||||||++.|..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            689999999999999999974

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=6.9e-06  Score=54.10  Aligned_cols=26  Identities=27%  Similarity=0.451  Sum_probs=23.9

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      +++|+++-|.||+|+|||||+-.++.
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            78999999999999999999887764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.82  E-value=5.5e-06  Score=54.24  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|+.|+|||||++.|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999843

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=6.2e-06  Score=53.98  Aligned_cols=22  Identities=45%  Similarity=0.789  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +++|+|.+++|||||++.|.|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999974

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.79  E-value=3.2e-06  Score=56.06  Aligned_cols=21  Identities=29%  Similarity=0.551  Sum_probs=19.3

Q ss_pred             EEEECCCCchHHHHHHHHHcC
Q psy16345         50 LAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +||+|++++|||||++.|+|-
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999763

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.78  E-value=6.4e-06  Score=54.97  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=21.2

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHc
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      +..++.|+||.||||||+.+.|+-
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999975

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=7.1e-06  Score=54.91  Aligned_cols=22  Identities=27%  Similarity=0.558  Sum_probs=19.9

Q ss_pred             eEEEEECCCCchHHHHHHHHHc
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      ..+.|+||||+|||||++.|..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998874

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=5.8e-06  Score=55.64  Aligned_cols=20  Identities=50%  Similarity=0.772  Sum_probs=18.1

Q ss_pred             EEEECCCCchHHHHHHHHHc
Q psy16345         50 LAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~g   69 (121)
                      +.|+||||||||||++.|+-
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999998864

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.77  E-value=4.8e-06  Score=54.76  Aligned_cols=22  Identities=36%  Similarity=0.596  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|++|+|||||++.|.|.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999985

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.76  E-value=6.6e-06  Score=52.29  Aligned_cols=22  Identities=41%  Similarity=0.548  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|++|+|||||++.|.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999999874

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.76  E-value=7.7e-06  Score=53.93  Aligned_cols=22  Identities=45%  Similarity=0.741  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +++|+|.+|+|||||++.|+|.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999985

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.74  E-value=7.5e-06  Score=53.58  Aligned_cols=22  Identities=36%  Similarity=0.573  Sum_probs=19.6

Q ss_pred             EEEECCCCchHHHHHHHHHcCC
Q psy16345         50 LAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +.|+|++||||||+.+.|+..+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999998654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=1.4e-05  Score=55.92  Aligned_cols=46  Identities=17%  Similarity=0.212  Sum_probs=31.3

Q ss_pred             EEEeeeEEEc-----CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345         22 LVFSGLSVTL-----DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        22 i~~~~l~~~~-----~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      +++++.....     +...+=+|++++ +.+.++.|.|||.+||||+||.++
T Consensus        12 l~i~~~rHPlle~~~~~~~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          12 IRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEeECCEEEcccCCCccceeEEEC-CCceEEEEeccCchhhHHHHHHHH
Confidence            5555554321     223455566554 345789999999999999999885

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.72  E-value=5.4e-06  Score=54.71  Aligned_cols=21  Identities=24%  Similarity=0.529  Sum_probs=19.8

Q ss_pred             EEEECCCCchHHHHHHHHHcC
Q psy16345         50 LAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +||+|..++|||||++.|+|.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999875

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.72  E-value=1.1e-05  Score=53.76  Aligned_cols=32  Identities=34%  Similarity=0.480  Sum_probs=25.2

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHH---cCCCCCcc
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLA---GRVKLDSG   76 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~---gl~~~~~G   76 (121)
                      ++|-.+.|+||.||||||+.+.|+   |+...+.|
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~g   35 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATG   35 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHH
Confidence            467788899999999999999998   54433333

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=9.8e-06  Score=54.18  Aligned_cols=26  Identities=27%  Similarity=0.328  Sum_probs=22.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +-.++.|+||.||||||+.+.|+.-+
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999998644

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=8.1e-06  Score=54.60  Aligned_cols=22  Identities=36%  Similarity=0.625  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|++|||||||++.|.+-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999874

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.71  E-value=6.4e-06  Score=53.61  Aligned_cols=25  Identities=36%  Similarity=0.444  Sum_probs=21.1

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .-.++|+|++|+|||||++.|.+-.
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999998753

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=9.9e-06  Score=52.17  Aligned_cols=25  Identities=44%  Similarity=0.729  Sum_probs=21.6

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      |=.++|+|+.++|||||++.|+|.-
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468999999999999999998753

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.71  E-value=2.2e-05  Score=51.69  Aligned_cols=22  Identities=32%  Similarity=0.638  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .+||+|..|+|||||++.|+|-
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999874

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.70  E-value=9.3e-06  Score=52.00  Aligned_cols=22  Identities=36%  Similarity=0.527  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|.+|+|||||++.+.+-
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999774

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.70  E-value=9.5e-06  Score=51.68  Aligned_cols=22  Identities=32%  Similarity=0.365  Sum_probs=19.3

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .+.|+|++|+|||||++.+.+-
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4679999999999999998753

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.69  E-value=8.5e-06  Score=53.53  Aligned_cols=22  Identities=36%  Similarity=0.545  Sum_probs=19.2

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .+.|+|++||||||+.+.|+-.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4669999999999999999753

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.67  E-value=7.2e-06  Score=54.94  Aligned_cols=27  Identities=26%  Similarity=0.460  Sum_probs=23.8

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ++++.++.|+||.||||||+.+.|+--
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            356789999999999999999999864

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.66  E-value=1.1e-05  Score=52.63  Aligned_cols=25  Identities=28%  Similarity=0.396  Sum_probs=21.3

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      .++.|.|++||||||+.+.|+..+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3678899999999999999987553

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.65  E-value=7.7e-06  Score=59.78  Aligned_cols=37  Identities=24%  Similarity=0.433  Sum_probs=29.9

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEEC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN   81 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~   81 (121)
                      +.+.-+.|.|+.||||||||++|++.+++..=-+.+.
T Consensus       164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE  200 (323)
T d1g6oa_         164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE  200 (323)
T ss_dssp             HHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred             HhCCCEEEEeeccccchHHHHHHhhhcccccceeecc
Confidence            4455689999999999999999999998765555553

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.4e-05  Score=53.20  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=19.4

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      ++.|+||.||||||..+.|+-
T Consensus         3 iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999975

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.64  E-value=1.3e-05  Score=52.40  Aligned_cols=22  Identities=32%  Similarity=0.463  Sum_probs=19.1

Q ss_pred             EEEECCCCchHHHHHHHHHcCC
Q psy16345         50 LAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +.|+|++||||||+.|.|+..+
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5688999999999999998644

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.62  E-value=1.6e-05  Score=53.02  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.4

Q ss_pred             eEEEEECCCCchHHHHHHHHHcC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++.++|.+||||||+.+.|+..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~   25 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRY   25 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999854

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.61  E-value=1e-05  Score=53.85  Aligned_cols=22  Identities=18%  Similarity=0.306  Sum_probs=19.3

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .+.|+||.||||||+.+.|+--
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4779999999999999999743

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.61  E-value=1.6e-05  Score=52.08  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=19.1

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .+.|+||.||||||+.+.|+--
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3679999999999999999643

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.60  E-value=1.7e-05  Score=53.61  Aligned_cols=21  Identities=33%  Similarity=0.599  Sum_probs=19.3

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      +++|-||+||||||+.+.|+-
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578899999999999999985

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=6.6e-06  Score=53.72  Aligned_cols=23  Identities=35%  Similarity=0.469  Sum_probs=20.7

Q ss_pred             eEEEEECCCCchHHHHHHHHHcC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      =.++|+|++++|||||++.|.+.
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            34899999999999999999875

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=1.8e-05  Score=53.12  Aligned_cols=30  Identities=47%  Similarity=0.712  Sum_probs=24.0

Q ss_pred             EEEEECCCCchHHHHHHHHHc---CCCCCccEE
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG---RVKLDSGVI   78 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g---l~~~~~G~i   78 (121)
                      +++|.||.||||||+.+.|+.   +...+.|.+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL   37 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI   37 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            889999999999999999974   444445554

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.58  E-value=3.2e-05  Score=53.74  Aligned_cols=27  Identities=33%  Similarity=0.440  Sum_probs=21.8

Q ss_pred             EEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345         41 SGVVKPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        41 sl~i~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      ++.+. ++++.|.|||.+||||+||.++
T Consensus        30 di~~~-~~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          30 DLEMA-HELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEES-SCEEEEESCSSSSHHHHHHHHH
T ss_pred             eEEeC-CcEEEEECCCccccchhhhhhH
Confidence            34443 4689999999999999999775

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.57  E-value=1.6e-05  Score=54.91  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=26.5

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNK   82 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g   82 (121)
                      ....+.|.||+|||||||.+.|++.+..  +-+.++.
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~   65 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN   65 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence            3456889999999999999999986542  3445554

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.56  E-value=2.1e-05  Score=52.14  Aligned_cols=37  Identities=24%  Similarity=0.460  Sum_probs=27.1

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL   85 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~   85 (121)
                      ++-+++.++|++||||||+.+-++-.    .|.+.++..++
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~D~~   48 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNRDTL   48 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh----cCCEEEchHHH
Confidence            44579999999999999999988643    34455654443

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.56  E-value=1.7e-05  Score=52.75  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.2

Q ss_pred             eEEEEECCCCchHHHHHHHHHcC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      -++||.|..||||||+.+.|.-+
T Consensus         4 ~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            37899999999999999998653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.55  E-value=2.1e-05  Score=50.84  Aligned_cols=23  Identities=35%  Similarity=0.524  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|+.|+|||||++.|.+-.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            47899999999999999998853

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.53  E-value=2.4e-05  Score=51.64  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.5

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .+.|+||.||||||+.+.|+--
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999853

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.51  E-value=3e-05  Score=53.00  Aligned_cols=41  Identities=24%  Similarity=0.297  Sum_probs=29.4

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCCC--CccEEEECCEeC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVKL--DSGVIRLNKERL   85 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~   85 (121)
                      .+|-++-|.|.+||||||+.+.|.-.+..  ..-.+.++|..+
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i   64 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   64 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence            57889999999999999999998743311  113456666543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.50  E-value=7.6e-06  Score=52.67  Aligned_cols=22  Identities=36%  Similarity=0.594  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++|+|..++|||||++.|+|.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999874

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.49  E-value=2.3e-05  Score=52.14  Aligned_cols=26  Identities=31%  Similarity=0.309  Sum_probs=22.7

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +.-+++|-|+.||||||+++.|...+
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            34589999999999999999998755

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.48  E-value=2.3e-05  Score=55.19  Aligned_cols=23  Identities=35%  Similarity=0.655  Sum_probs=20.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|++|+|||||++.|.|..
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            48899999999999999999853

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.48  E-value=3e-05  Score=52.39  Aligned_cols=27  Identities=30%  Similarity=0.402  Sum_probs=24.1

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      =+++|+++-|.|++|||||||.-.++-
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            389999999999999999999887753

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3e-05  Score=52.95  Aligned_cols=27  Identities=26%  Similarity=0.396  Sum_probs=23.7

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ++|.+++|-|+-||||||+.+.|..-+
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L   27 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEAL   27 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence            479999999999999999999887643

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=1.9e-05  Score=53.83  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=23.5

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ++.+++|-|+-||||||+++.|+..+
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999999865

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=97.45  E-value=2.8e-05  Score=51.43  Aligned_cols=21  Identities=38%  Similarity=0.487  Sum_probs=19.9

Q ss_pred             EEEECCCCchHHHHHHHHHcC
Q psy16345         50 LAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +||+|...||||||++.|++.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            899999999999999999974

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=3e-05  Score=50.97  Aligned_cols=21  Identities=19%  Similarity=0.295  Sum_probs=18.7

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .+.|+||.||||||..+.|+-
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999974

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.45  E-value=3.7e-05  Score=50.59  Aligned_cols=21  Identities=38%  Similarity=0.536  Sum_probs=18.8

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .+.|+||.||||||+.+.|+-
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999974

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.44  E-value=3.4e-05  Score=50.11  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=20.7

Q ss_pred             eEEEEECCCCchHHHHHHHHHcC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      =.++|+|..|||||||++.|.+-
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35889999999999999999875

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=3.7e-05  Score=51.93  Aligned_cols=26  Identities=27%  Similarity=0.440  Sum_probs=23.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +|.+++|-|+-||||||+++.|...+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999988643

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=3.5e-05  Score=51.72  Aligned_cols=21  Identities=29%  Similarity=0.319  Sum_probs=19.5

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|+|+.|+|||||++.|.+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999986

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.39  E-value=4.2e-05  Score=51.76  Aligned_cols=21  Identities=33%  Similarity=0.597  Sum_probs=19.3

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      ++||.|..||||||+.+++.-
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.36  E-value=5.5e-05  Score=49.89  Aligned_cols=22  Identities=36%  Similarity=0.608  Sum_probs=19.3

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .+.|+||.||||||+.+.|+--
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999999853

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.36  E-value=5.5e-05  Score=50.68  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=20.2

Q ss_pred             eEEEEECCCCchHHHHHHHHHcC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      -.+.|+||.||||||+.+.|+--
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999999864

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.35  E-value=6.3e-05  Score=51.27  Aligned_cols=25  Identities=36%  Similarity=0.562  Sum_probs=22.5

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHH
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      +++|+++.|.|++|||||||.-.++
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence            7999999999999999999976554

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.35  E-value=5.2e-05  Score=49.10  Aligned_cols=21  Identities=38%  Similarity=0.537  Sum_probs=18.7

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|+|++|+|||||++.+.+
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            467999999999999998865

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=5.5e-05  Score=56.48  Aligned_cols=23  Identities=39%  Similarity=0.631  Sum_probs=21.0

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      -++|+|++|+|||||++.|.|.-
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            38999999999999999999854

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.34  E-value=6e-05  Score=51.76  Aligned_cols=25  Identities=36%  Similarity=0.547  Sum_probs=20.2

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ++.+++++||+|+||||.+-=|+..
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~   29 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRY   29 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999986545543

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=6.4e-05  Score=51.10  Aligned_cols=26  Identities=23%  Similarity=0.288  Sum_probs=23.7

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      =|++|+++.|.|++|||||||.-.++
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence            37999999999999999999987776

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.33  E-value=6.5e-05  Score=51.54  Aligned_cols=25  Identities=32%  Similarity=0.473  Sum_probs=21.7

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      ..+.|.||+|+||||++++|+..+.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999998654

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.32  E-value=7.3e-05  Score=50.31  Aligned_cols=25  Identities=20%  Similarity=0.352  Sum_probs=23.3

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHH
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      +++|+++-|.|++|+|||||+-.++
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            8999999999999999999987775

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=5.9e-05  Score=49.10  Aligned_cols=20  Identities=35%  Similarity=0.695  Sum_probs=18.4

Q ss_pred             EEEECCCCchHHHHHHHHHc
Q psy16345         50 LAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~g   69 (121)
                      ++|+|+.|+|||||++.+.+
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998875

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=5.2e-05  Score=55.06  Aligned_cols=25  Identities=20%  Similarity=0.381  Sum_probs=22.0

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      =++||.|++||||||+.+.|..++.
T Consensus        81 ~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          81 YIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            3899999999999999999987653

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.31  E-value=7.3e-05  Score=50.11  Aligned_cols=25  Identities=32%  Similarity=0.328  Sum_probs=22.2

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHH
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      +++|+++-|.|++|+|||||+-.++
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            8999999999999999999975443

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=6.4e-05  Score=51.32  Aligned_cols=27  Identities=33%  Similarity=0.470  Sum_probs=24.5

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      +|.+++|=|+-||||||+.+.|+-.+.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            689999999999999999999987654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.30  E-value=6.1e-05  Score=51.32  Aligned_cols=23  Identities=43%  Similarity=0.566  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+-|.||+|+||||++++|+..+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            36799999999999999998743

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.30  E-value=6.2e-05  Score=51.45  Aligned_cols=24  Identities=17%  Similarity=0.300  Sum_probs=21.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHc
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .+.++.|.||.|+|||||++.++.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHH
Confidence            457899999999999999998864

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.29  E-value=8e-05  Score=50.75  Aligned_cols=26  Identities=23%  Similarity=0.408  Sum_probs=23.7

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      +++|.++.|.|++|+|||||+..++-
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            78999999999999999999877764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=6e-05  Score=48.86  Aligned_cols=21  Identities=38%  Similarity=0.517  Sum_probs=18.9

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|+|++|+|||||++.+.+
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999998875

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.27  E-value=6.4e-05  Score=51.34  Aligned_cols=27  Identities=33%  Similarity=0.564  Sum_probs=22.6

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCCCCc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVKLDS   75 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~~~~   75 (121)
                      .+-+.||+|+||||+.++|+..+....
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~~   63 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTNI   63 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCCc
Confidence            367999999999999999998665543

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.26  E-value=7.3e-05  Score=48.65  Aligned_cols=20  Identities=35%  Similarity=0.542  Sum_probs=18.3

Q ss_pred             EEEECCCCchHHHHHHHHHc
Q psy16345         50 LAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~g   69 (121)
                      ++++|..|+|||||++.+.+
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=6.2e-05  Score=54.97  Aligned_cols=26  Identities=31%  Similarity=0.404  Sum_probs=22.5

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .+.-++||.|+.|||||||+..|...
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~   77 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGML   77 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHH
Confidence            45678999999999999999998743

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=7.7e-05  Score=50.53  Aligned_cols=22  Identities=36%  Similarity=0.593  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ++||+|..||||||..+++..+
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHC
Confidence            7899999999999999998743

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.25  E-value=6.2e-05  Score=48.96  Aligned_cols=22  Identities=41%  Similarity=0.578  Sum_probs=19.7

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++++|+.|+|||||++.+.+-
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999764

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.25  E-value=8e-05  Score=51.96  Aligned_cols=34  Identities=29%  Similarity=0.321  Sum_probs=27.0

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      -|+++..=+.+|+++.|.|++|+|||||+..++-
T Consensus        24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            3444443479999999999999999999877763

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.24  E-value=7.7e-05  Score=50.60  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=19.3

Q ss_pred             EEEECCCCchHHHHHHHHHcC
Q psy16345         50 LAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +.|.||+|+||||++++++..
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            679999999999999999875

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.21  E-value=8.2e-05  Score=53.55  Aligned_cols=26  Identities=31%  Similarity=0.511  Sum_probs=22.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +..-+.++||+|+|||.|.|+|+..+
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhcc
Confidence            34556799999999999999999864

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=9.1e-05  Score=48.44  Aligned_cols=20  Identities=35%  Similarity=0.684  Sum_probs=18.2

Q ss_pred             EEEECCCCchHHHHHHHHHc
Q psy16345         50 LAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~g   69 (121)
                      ++|+|+.|+|||||++.+.+
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999997755

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.20  E-value=0.00012  Score=50.15  Aligned_cols=26  Identities=38%  Similarity=0.353  Sum_probs=20.6

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +...++.++||+|+||||.+-=|+-.
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~   33 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALY   33 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999987666643

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00011  Score=47.56  Aligned_cols=21  Identities=33%  Similarity=0.561  Sum_probs=18.6

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|+|..|+|||||++.+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999988765

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=9.8e-05  Score=47.71  Aligned_cols=20  Identities=20%  Similarity=0.514  Sum_probs=17.7

Q ss_pred             EEEECCCCchHHHHHHHHHc
Q psy16345         50 LAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~g   69 (121)
                      ++|+|+.|+|||||++.+..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987664

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.19  E-value=4.1e-05  Score=55.18  Aligned_cols=24  Identities=25%  Similarity=0.529  Sum_probs=18.1

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      ++||.|+|||||||+.+.|...+.
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHh
Confidence            899999999999999998876543

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.17  E-value=9.8e-05  Score=50.70  Aligned_cols=22  Identities=41%  Similarity=0.720  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ++||+|...||||||++.|.+.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            5999999999999999999763

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.17  E-value=9.2e-05  Score=50.63  Aligned_cols=23  Identities=43%  Similarity=0.719  Sum_probs=20.3

Q ss_pred             EEEECCCCchHHHHHHHHHcCCC
Q psy16345         50 LAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      +-+.||.|+||||+.+++++.+.
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            56999999999999999998654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00013  Score=47.96  Aligned_cols=21  Identities=43%  Similarity=0.613  Sum_probs=18.9

Q ss_pred             EEEECCCCchHHHHHHHHHcC
Q psy16345         50 LAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ++|+|+.|+|||||++.+.+-
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999988753

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.14  E-value=9.9e-05  Score=47.71  Aligned_cols=21  Identities=33%  Similarity=0.572  Sum_probs=18.7

Q ss_pred             EEEECCCCchHHHHHHHHHcC
Q psy16345         50 LAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ++++|.+|+|||||++.++.-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999987753

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00014  Score=47.19  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++|+|..|+|||||++.+.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCcCHHHHHHHHhCCc
Confidence            37899999999999999998753

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.13  E-value=0.00016  Score=47.70  Aligned_cols=29  Identities=24%  Similarity=0.321  Sum_probs=25.3

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ..++|.++.|-|+=|||||||.|.++.-+
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            34689999999999999999999998543

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.0001  Score=47.66  Aligned_cols=21  Identities=24%  Similarity=0.387  Sum_probs=18.9

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|+|+.|+|||||++.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.12  E-value=0.00013  Score=48.01  Aligned_cols=20  Identities=40%  Similarity=0.735  Sum_probs=18.1

Q ss_pred             EEEECCCCchHHHHHHHHHc
Q psy16345         50 LAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~g   69 (121)
                      ++|+|..|+|||||++.+.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00013  Score=47.57  Aligned_cols=20  Identities=30%  Similarity=0.582  Sum_probs=18.0

Q ss_pred             EEEECCCCchHHHHHHHHHc
Q psy16345         50 LAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~g   69 (121)
                      +.|+|++|+|||||++.+.+
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.11  E-value=0.00014  Score=48.40  Aligned_cols=23  Identities=43%  Similarity=0.723  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +++|-|.-||||||+++.|...+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999998643

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00012  Score=47.66  Aligned_cols=21  Identities=33%  Similarity=0.453  Sum_probs=18.6

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|+|.+|+|||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999987764

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.10  E-value=9.3e-05  Score=51.00  Aligned_cols=25  Identities=40%  Similarity=0.509  Sum_probs=19.3

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .+-.+++++||+|+||||.+-=|+-
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999998644443

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00015  Score=46.90  Aligned_cols=21  Identities=29%  Similarity=0.493  Sum_probs=18.8

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|+|..|+|||||++.+.+
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988865

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00012  Score=47.57  Aligned_cols=21  Identities=29%  Similarity=0.569  Sum_probs=18.9

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .+.|+|..|+|||||++.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998875

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.0001  Score=50.76  Aligned_cols=25  Identities=32%  Similarity=0.458  Sum_probs=19.6

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      -.+++++||+|+||||.+-=|+-.+
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3689999999999999875555433

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00018  Score=50.58  Aligned_cols=29  Identities=38%  Similarity=0.548  Sum_probs=22.9

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      ++...-+-|.||+|+|||++.+.|+..+.
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence            33445677999999999999999997543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00013  Score=46.91  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=18.8

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|+|..|+|||||++.+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998875

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.06  E-value=0.00016  Score=52.64  Aligned_cols=25  Identities=24%  Similarity=0.428  Sum_probs=21.8

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +.-++||.|+.|||||||+..|...
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHH
Confidence            4567999999999999999988753

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00017  Score=46.41  Aligned_cols=20  Identities=35%  Similarity=0.506  Sum_probs=18.1

Q ss_pred             EEEECCCCchHHHHHHHHHc
Q psy16345         50 LAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~g   69 (121)
                      +.|+|..|+|||||++.+..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00016  Score=46.72  Aligned_cols=20  Identities=30%  Similarity=0.589  Sum_probs=18.1

Q ss_pred             EEEECCCCchHHHHHHHHHc
Q psy16345         50 LAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~g   69 (121)
                      +.|+|.+|+|||||++.+.+
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999988764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00018  Score=46.48  Aligned_cols=21  Identities=19%  Similarity=0.520  Sum_probs=18.6

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|+|..|+|||||++.+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=97.05  E-value=8.4e-05  Score=48.79  Aligned_cols=22  Identities=36%  Similarity=0.508  Sum_probs=19.3

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .++++|++|+|||||++.+.+-
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4779999999999999988754

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.05  E-value=0.00016  Score=49.30  Aligned_cols=27  Identities=30%  Similarity=0.218  Sum_probs=22.9

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCCCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRVKL   73 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~~~   73 (121)
                      ...+.|.||.|+||||++|.|+..+..
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence            357889999999999999999976543

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00019  Score=46.66  Aligned_cols=20  Identities=30%  Similarity=0.645  Sum_probs=17.5

Q ss_pred             EEEECCCCchHHHHHHHHHc
Q psy16345         50 LAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~g   69 (121)
                      ++|+|++|+|||||++.+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999976654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00029  Score=45.89  Aligned_cols=23  Identities=39%  Similarity=0.626  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+.|+|..|+|||||++.+.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCc
Confidence            37899999999999999998753

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.99  E-value=0.00049  Score=46.02  Aligned_cols=33  Identities=27%  Similarity=0.180  Sum_probs=25.8

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++..-+.+ .|.-+.|.|+||+|||||.-.+..
T Consensus         5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2           5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            355555555 788899999999999999876653

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0002  Score=46.26  Aligned_cols=20  Identities=25%  Similarity=0.419  Sum_probs=18.0

Q ss_pred             EEEECCCCchHHHHHHHHHc
Q psy16345         50 LAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~g   69 (121)
                      +.|+|..|+|||||++.+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.98  E-value=0.0002  Score=49.20  Aligned_cols=24  Identities=29%  Similarity=0.306  Sum_probs=15.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHc
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .-.++.++||+|+||||.+-=|+-
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~   34 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAY   34 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999998644543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00018  Score=46.98  Aligned_cols=21  Identities=38%  Similarity=0.620  Sum_probs=18.6

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .+.|+|.+|+|||||++.+..
T Consensus         4 KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988775

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00021  Score=46.67  Aligned_cols=20  Identities=35%  Similarity=0.674  Sum_probs=18.5

Q ss_pred             EEEECCCCchHHHHHHHHHc
Q psy16345         50 LAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~g   69 (121)
                      ++++|..|+|||||++.+.+
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.00022  Score=51.13  Aligned_cols=21  Identities=24%  Similarity=0.379  Sum_probs=18.9

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      ++||-|+.|||||||.+.|.-
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHH
Confidence            889999999999999987754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00023  Score=46.77  Aligned_cols=21  Identities=33%  Similarity=0.396  Sum_probs=18.7

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|+|.+|+|||||++.+..
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999987764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.94  E-value=0.00021  Score=49.80  Aligned_cols=24  Identities=29%  Similarity=0.364  Sum_probs=21.0

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .-+.|.||.|+|||++.+.|+...
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhcc
Confidence            357799999999999999999754

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.00022  Score=48.31  Aligned_cols=22  Identities=41%  Similarity=0.730  Sum_probs=19.1

Q ss_pred             EEEECCCCchHHHHHHHHHcCC
Q psy16345         50 LAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +-|.||+|+||||+.++++..+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHH
Confidence            5789999999999999987643

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.00024  Score=45.96  Aligned_cols=21  Identities=19%  Similarity=0.461  Sum_probs=18.3

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|+|..|+|||||++.+.+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999997664

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00025  Score=45.94  Aligned_cols=21  Identities=29%  Similarity=0.474  Sum_probs=18.6

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .+.++|..|+|||||++.+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            468999999999999988874

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.91  E-value=0.00021  Score=47.48  Aligned_cols=20  Identities=40%  Similarity=0.640  Sum_probs=18.2

Q ss_pred             EEEECCCCchHHHHHHHHHc
Q psy16345         50 LAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~g   69 (121)
                      ++|+|+.|+|||||++.+..
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999998764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00027  Score=45.86  Aligned_cols=21  Identities=33%  Similarity=0.563  Sum_probs=18.7

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .+.|+|..|+|||||++-+..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999998875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00022  Score=46.45  Aligned_cols=21  Identities=33%  Similarity=0.455  Sum_probs=18.5

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .+.|+|..|+|||||++.+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999987764

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.90  E-value=0.00021  Score=53.20  Aligned_cols=34  Identities=29%  Similarity=0.482  Sum_probs=26.1

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCCCCccEE
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI   78 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i   78 (121)
                      .+.-++.|.||.||||||+|..+...+......|
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i  189 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNI  189 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceE
Confidence            4567899999999999999999988553333343

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00023  Score=46.28  Aligned_cols=20  Identities=35%  Similarity=0.627  Sum_probs=18.3

Q ss_pred             EEEECCCCchHHHHHHHHHc
Q psy16345         50 LAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~g   69 (121)
                      ++|+|..|+|||||++.+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.88  E-value=0.00016  Score=47.06  Aligned_cols=23  Identities=30%  Similarity=0.345  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+.|+|++|+|||||++.+.+-.
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47799999999999999987643

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00033  Score=48.44  Aligned_cols=24  Identities=38%  Similarity=0.533  Sum_probs=21.2

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHH
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      .+|+++.|.|++|+|||||+-.|+
T Consensus        27 ~pg~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          27 VAGTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCcEEEEEeCCCCCHHHHHHHHH
Confidence            569999999999999999986664

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.86  E-value=0.00022  Score=48.67  Aligned_cols=21  Identities=38%  Similarity=0.547  Sum_probs=18.9

Q ss_pred             EEEECCCCchHHHHHHHHHcC
Q psy16345         50 LAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +.|.||.|+||||+.++++..
T Consensus        36 lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            679999999999999999863

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.85  E-value=0.00018  Score=49.27  Aligned_cols=23  Identities=39%  Similarity=0.557  Sum_probs=19.3

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ++.|.||.|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            45567999999999999998654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.84  E-value=0.00019  Score=46.77  Aligned_cols=20  Identities=40%  Similarity=0.607  Sum_probs=8.6

Q ss_pred             EEEECCCCchHHHHHHHHHc
Q psy16345         50 LAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~g   69 (121)
                      ++|+|..|+|||||++.+++
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987765

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.83  E-value=0.00033  Score=45.51  Aligned_cols=21  Identities=33%  Similarity=0.445  Sum_probs=18.4

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .+.++|..|+|||||++.+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            367999999999999998765

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.83  E-value=0.00026  Score=49.79  Aligned_cols=29  Identities=34%  Similarity=0.716  Sum_probs=23.9

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      ++...-+-|.||+|+|||+|.+++++.+.
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence            34455578999999999999999998653

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.83  E-value=0.00081  Score=44.89  Aligned_cols=33  Identities=24%  Similarity=0.150  Sum_probs=24.4

Q ss_pred             eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++..-+ .-.|.-+.|.|+||+|||||.-.+..
T Consensus         4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_           4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence            3444333 45678899999999999999776653

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=0.0003  Score=47.46  Aligned_cols=21  Identities=43%  Similarity=0.680  Sum_probs=19.1

Q ss_pred             EEEECCCCchHHHHHHHHHcC
Q psy16345         50 LAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +-|.||.|+||||++++|+..
T Consensus        38 lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHH
Confidence            669999999999999999864

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.82  E-value=0.00034  Score=45.97  Aligned_cols=28  Identities=21%  Similarity=0.330  Sum_probs=22.1

Q ss_pred             EEEEECCCCchHHHHHHHHHcC--CCCCcc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR--VKLDSG   76 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl--~~~~~G   76 (121)
                      .+.|+|.+|+|||||++.+.-.  ..|+-|
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            4789999999999999988432  346777

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00034  Score=45.26  Aligned_cols=20  Identities=40%  Similarity=0.605  Sum_probs=17.9

Q ss_pred             EEEECCCCchHHHHHHHHHc
Q psy16345         50 LAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~g   69 (121)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999997654

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.0003  Score=50.53  Aligned_cols=29  Identities=28%  Similarity=0.408  Sum_probs=26.5

Q ss_pred             EEEeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345         42 GVVKPGELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +.|-+|+..+|+|++|+|||||+..|+.-
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            57899999999999999999999998864

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00017  Score=46.93  Aligned_cols=21  Identities=33%  Similarity=0.490  Sum_probs=17.9

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|+|..|+|||||++.++.
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999987754

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.78  E-value=0.00035  Score=48.75  Aligned_cols=24  Identities=38%  Similarity=0.700  Sum_probs=21.1

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      -+-|.||.|+|||+|.+.|+..+.
T Consensus        44 giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEecCCCCChhHHHHHHHHHcC
Confidence            467999999999999999998653

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.78  E-value=0.00037  Score=45.18  Aligned_cols=21  Identities=24%  Similarity=0.360  Sum_probs=18.5

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .+.|+|..|+|||||++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.76  E-value=0.00044  Score=47.09  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=19.9

Q ss_pred             eEEEEECCCCchHHHHHHHHHc
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++||.|.-||||||..+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999964

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.0004  Score=44.79  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=18.4

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|+|..|+|||||++.+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            378999999999999998764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00038  Score=45.80  Aligned_cols=20  Identities=40%  Similarity=0.516  Sum_probs=17.9

Q ss_pred             EEEECCCCchHHHHHHHHHc
Q psy16345         50 LAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~g   69 (121)
                      ++|+|..|+|||||++.+..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            78999999999999987664

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.74  E-value=0.00016  Score=52.06  Aligned_cols=26  Identities=31%  Similarity=0.392  Sum_probs=22.8

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCCCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRVKL   73 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~~~   73 (121)
                      .-+-|+|+.|+|||||+|.+++++++
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCCC
Confidence            34789999999999999999998764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.74  E-value=0.00032  Score=45.67  Aligned_cols=29  Identities=21%  Similarity=0.386  Sum_probs=23.5

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCCCCccE
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGV   77 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~~~~G~   77 (121)
                      .+.|+|..|+|||||++-+.....|+.|.
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t~~~   32 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI   32 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCccE
Confidence            46899999999999999887655566664

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.73  E-value=0.0003  Score=53.18  Aligned_cols=24  Identities=33%  Similarity=0.569  Sum_probs=21.4

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      =+.++||+|+|||-|.|.|++++.
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC
Confidence            467999999999999999999764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00046  Score=45.34  Aligned_cols=21  Identities=29%  Similarity=0.523  Sum_probs=18.6

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++++|..|+|||||++.+.+
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            578999999999999997765

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.68  E-value=0.00039  Score=49.59  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      -+||+|...+|||||++.|+|.
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             cEeEECCCCCCHHHHHHHHHCC
Confidence            3899999999999999999885

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.68  E-value=0.00051  Score=46.70  Aligned_cols=28  Identities=32%  Similarity=0.495  Sum_probs=21.7

Q ss_pred             EEEEECCCCchHHHHHHHHH-cCCCCCcc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLA-GRVKLDSG   76 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~-gl~~~~~G   76 (121)
                      .+.|+|.+|+|||||++-+. +-..|+-|
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            57899999999999998774 33446555

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00066  Score=47.89  Aligned_cols=42  Identities=24%  Similarity=0.368  Sum_probs=30.2

Q ss_pred             EEEeCCeEEEEECCCCchHHHHHHHHHcC-CCCCccEEEECCE
Q psy16345         42 GVVKPGELLAVMGPSGCGKTTLLNCLAGR-VKLDSGVIRLNKE   83 (121)
Q Consensus        42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl-~~~~~G~i~~~g~   83 (121)
                      -=++.|.++-|.||+|+|||||+-.++.. ..+..--++++.+
T Consensus        49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE   91 (263)
T d1u94a1          49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE   91 (263)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence            36799999999999999999997666543 3333334555544

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.66  E-value=0.00054  Score=47.82  Aligned_cols=24  Identities=29%  Similarity=0.533  Sum_probs=20.9

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .-+-|.||+|+|||+|.++++...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceeEEecCCCCCchHHHHHHHHHh
Confidence            347799999999999999999854

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.65  E-value=0.00049  Score=45.16  Aligned_cols=21  Identities=48%  Similarity=0.790  Sum_probs=17.7

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .+.|+|.+|+|||||++.+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999976654

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.62  E-value=0.0001  Score=52.39  Aligned_cols=41  Identities=24%  Similarity=0.431  Sum_probs=30.5

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccE-EEECCE
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV-IRLNKE   83 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~-i~~~g~   83 (121)
                      =++.|.++-|.||+|||||||+-.++....-..|. ++++.+
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE   94 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE   94 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence            57999999999999999999987777643323343 455543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00048  Score=45.49  Aligned_cols=21  Identities=33%  Similarity=0.396  Sum_probs=18.0

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .++|+|..|+|||||++.+..
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999977654

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00043  Score=49.21  Aligned_cols=24  Identities=38%  Similarity=0.569  Sum_probs=21.9

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      -+++|+||-++||||||+.|.|..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            589999999999999999999854

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.59  E-value=0.00073  Score=44.86  Aligned_cols=22  Identities=36%  Similarity=0.534  Sum_probs=20.0

Q ss_pred             EEEECCCCchHHHHHHHHHcCC
Q psy16345         50 LAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +|++|.-.+|||||++.|.|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            6999999999999999999853

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.00073  Score=48.61  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=22.4

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +...+.++||+|+|||.|.+.|+..+
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCcchhHHHHHHHHhhc
Confidence            34468899999999999999999865

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.56  E-value=0.00051  Score=48.86  Aligned_cols=24  Identities=17%  Similarity=0.350  Sum_probs=21.4

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +-.+||||...+|||||+++|++-
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCC
Confidence            345999999999999999999975

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.55  E-value=0.0012  Score=43.67  Aligned_cols=31  Identities=29%  Similarity=0.194  Sum_probs=23.6

Q ss_pred             EEeeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345         37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      ++. ++-.-.|.-+.|.|+||+|||||.-.+.
T Consensus         6 ~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2           6 LHG-VLVDVYGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EES-EEEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             EEE-EEEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence            444 4445678889999999999999875554

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00069  Score=45.95  Aligned_cols=24  Identities=25%  Similarity=0.389  Sum_probs=21.3

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+++|=|.-||||||+++.|.-.+
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l   26 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHH
Confidence            478999999999999999998644

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.47  E-value=0.00061  Score=47.96  Aligned_cols=22  Identities=36%  Similarity=0.675  Sum_probs=20.4

Q ss_pred             EEEECCCCchHHHHHHHHHcCC
Q psy16345         50 LAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ++++|.-.||||||+++|+|.-
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999954

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.46  E-value=0.00068  Score=47.97  Aligned_cols=23  Identities=30%  Similarity=0.624  Sum_probs=20.9

Q ss_pred             EEEEECCCCchHHHHHHHHHcCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++++|.-.||||||++.|+|..
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999964

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.39  E-value=0.00057  Score=48.47  Aligned_cols=42  Identities=24%  Similarity=0.418  Sum_probs=30.1

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccE-EEECCEe
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV-IRLNKER   84 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~-i~~~g~~   84 (121)
                      -++.|.++-|.||+|+|||||+-.++.......|. ++++.+.
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            57899999999999999999976555433333455 4455443

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.29  E-value=0.0011  Score=46.57  Aligned_cols=22  Identities=32%  Similarity=0.511  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .+||||-..+|||||++.|++-
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            6899999999999999999964

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.28  E-value=0.0011  Score=43.09  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=18.4

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .+.|+|..|+|||||++.+..
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            468999999999999998854

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.27  E-value=0.00099  Score=48.96  Aligned_cols=30  Identities=27%  Similarity=0.278  Sum_probs=26.7

Q ss_pred             EEeCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      .++++..+.+.||.|+||||+.+.|+..+.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            457888999999999999999999998764

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.14  E-value=0.0019  Score=45.94  Aligned_cols=28  Identities=29%  Similarity=0.444  Sum_probs=25.3

Q ss_pred             EEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345         42 GVVKPGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        42 l~i~~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      +.+-+|+..+|+|++|+|||||+..++.
T Consensus        63 ~pigkGQr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          63 APYAKGGKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence            5789999999999999999999877764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.04  E-value=0.0021  Score=45.04  Aligned_cols=24  Identities=21%  Similarity=0.319  Sum_probs=21.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHc
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      ...+++|.|.-|.|||||.+.+..
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998864

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.0015  Score=47.85  Aligned_cols=33  Identities=30%  Similarity=0.396  Sum_probs=22.3

Q ss_pred             eEEEEECCCCchHHHHHHHHH-cCCCCCccEEEE
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLA-GRVKLDSGVIRL   80 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~-gl~~~~~G~i~~   80 (121)
                      ..+.|+|++|||||++++.+. .+.....+-|.+
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iii   84 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIV   84 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence            458999999999999987554 333333334444

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.01  E-value=0.0019  Score=43.49  Aligned_cols=20  Identities=35%  Similarity=0.458  Sum_probs=18.2

Q ss_pred             EEEEECCCCchHHHHHHHHH
Q psy16345         49 LLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~   68 (121)
                      -+|++|.-++|||||+..|.
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHH
Confidence            37999999999999999985

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.99  E-value=0.0019  Score=45.62  Aligned_cols=20  Identities=45%  Similarity=0.689  Sum_probs=18.2

Q ss_pred             EEEEECCCCchHHHHHHHHH
Q psy16345         49 LLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~   68 (121)
                      -++|+|..|+|||||...|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            47999999999999999884

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.98  E-value=0.0025  Score=42.59  Aligned_cols=26  Identities=35%  Similarity=0.518  Sum_probs=21.8

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      |.=-+||+|.-.+|||||+..|.+..
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhhh
Confidence            33358999999999999999999854

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.0014  Score=44.73  Aligned_cols=22  Identities=36%  Similarity=0.493  Sum_probs=19.3

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      ++.|.|-=|||||||++-+...
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            6789999999999999988764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.0027  Score=43.31  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=18.7

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .+-|.||+|+||||+.++++..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~   57 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKG   57 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4668899999999999998753

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.72  E-value=0.0029  Score=42.88  Aligned_cols=21  Identities=33%  Similarity=0.585  Sum_probs=18.7

Q ss_pred             EEEECCCCchHHHHHHHHHcC
Q psy16345         50 LAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~gl   70 (121)
                      +.|.||+|+|||-|+++++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            579999999999999999863

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.71  E-value=0.0025  Score=45.24  Aligned_cols=20  Identities=20%  Similarity=0.225  Sum_probs=18.0

Q ss_pred             EEEEECCCCchHHHHHHHHH
Q psy16345         49 LLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~   68 (121)
                      -+||+|..|||||||...|+
T Consensus         8 ni~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            58999999999999998883

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0033  Score=42.23  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=19.4

Q ss_pred             EEEEECCCCchHHHHHHHHHcC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGR   70 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl   70 (121)
                      .+-+.||.|+||||+.+.++..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHh
Confidence            4778999999999999988864

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.62  E-value=0.0036  Score=44.94  Aligned_cols=36  Identities=33%  Similarity=0.594  Sum_probs=25.9

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCCC-CCccEEEEC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRVK-LDSGVIRLN   81 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~~-~~~G~i~~~   81 (121)
                      +..++.++||+|+|||.|.+.|+..+. ....-+.++
T Consensus        52 p~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~   88 (315)
T d1qvra3          52 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID   88 (315)
T ss_dssp             CSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred             CceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEe
Confidence            344678999999999999999997642 223344454

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.48  E-value=0.0037  Score=45.21  Aligned_cols=44  Identities=18%  Similarity=0.223  Sum_probs=28.5

Q ss_pred             EEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345         41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL   85 (121)
Q Consensus        41 sl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~   85 (121)
                      -...++| ++.+.||.|+|||.|.+.|++......--+.+.+.++
T Consensus       118 ~~~~~~g-~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~  161 (321)
T d1w44a_         118 GHRYASG-MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEP  161 (321)
T ss_dssp             TEEEESE-EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCS
T ss_pred             hcccCCc-eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHh
Confidence            3445554 5556899999999999999986421112345555443

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=95.46  E-value=0.0025  Score=45.18  Aligned_cols=37  Identities=16%  Similarity=0.072  Sum_probs=28.1

Q ss_pred             EEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEE
Q psy16345         42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI   78 (121)
Q Consensus        42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i   78 (121)
                      +.+-+|+.++|+|++|+|||+|+..+.-........+
T Consensus        62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~   98 (276)
T d1fx0a3          62 IPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVIC   98 (276)
T ss_dssp             SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEE
T ss_pred             ccccCCceEeeccCCCCChHHHHHHHHhhhcccCcee
Confidence            5788999999999999999999876544333333343

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.41  E-value=0.0042  Score=45.48  Aligned_cols=27  Identities=30%  Similarity=0.635  Sum_probs=22.1

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ++++. +-++||+|+|||-|.|.|+.+.
T Consensus        66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          66 LSKSN-ILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCcc-eeeeCCCCccHHHHHHHHHhhc
Confidence            34554 5688999999999999999865

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.37  E-value=0.0078  Score=43.62  Aligned_cols=32  Identities=22%  Similarity=0.195  Sum_probs=24.7

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCCCCccEEEE
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL   80 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~   80 (121)
                      .+.|=|+=|+||||+++.|+..+....+.+.+
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~   39 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF   39 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence            46788999999999999999876554443333

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.15  E-value=0.0059  Score=43.01  Aligned_cols=22  Identities=36%  Similarity=0.433  Sum_probs=18.9

Q ss_pred             eEEEEECCCCchHHHHHHHHHc
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      .-+.|||++|.|||+++.-++.
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHH
Confidence            3567999999999999988875

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=95.10  E-value=0.0058  Score=40.85  Aligned_cols=20  Identities=30%  Similarity=0.469  Sum_probs=18.6

Q ss_pred             EEEECCCCchHHHHHHHHHc
Q psy16345         50 LAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~g   69 (121)
                      +|++|.-.+|||||+..|.+
T Consensus         6 i~iiGHvd~GKSTL~~~l~~   25 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITK   25 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            79999999999999998875

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.99  E-value=0.0073  Score=40.69  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=18.5

Q ss_pred             EEEEECCCCchHHHHHHHHHc
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~g   69 (121)
                      -+.|+|++|.|||++..-|+.
T Consensus        45 n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHH
Confidence            467999999999999988875

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=94.96  E-value=0.0056  Score=44.14  Aligned_cols=20  Identities=45%  Similarity=0.694  Sum_probs=18.0

Q ss_pred             eCCeEEEEECCCCchHHHHH
Q psy16345         45 KPGELLAVMGPSGCGKTTLL   64 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl   64 (121)
                      +.|++..+.|-||+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            56899999999999999985

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=94.81  E-value=0.0057  Score=44.20  Aligned_cols=20  Identities=50%  Similarity=0.728  Sum_probs=17.6

Q ss_pred             eCCeEEEEECCCCchHHHHH
Q psy16345         45 KPGELLAVMGPSGCGKTTLL   64 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl   64 (121)
                      +.|++..+.|-||+|||||-
T Consensus        12 ~~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          12 KEGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TTCCEEEEEECTTSCHHHHT
T ss_pred             CCCCEEEEEccCCCCccccc
Confidence            35889999999999999984

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.81  E-value=0.0035  Score=44.63  Aligned_cols=27  Identities=19%  Similarity=0.190  Sum_probs=24.0

Q ss_pred             EEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345         42 GVVKPGELLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        42 l~i~~G~~~~liG~nGsGKSTLl~~l~   68 (121)
                      +.+-+|+.++|+|+.|+|||+|+..++
T Consensus        63 ~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          63 VPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             SCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             cCccCCCEEEeecCCCCChHHHHHHHH
Confidence            588999999999999999999986554

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.73  E-value=0.0058  Score=44.30  Aligned_cols=33  Identities=24%  Similarity=0.227  Sum_probs=25.4

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCCCCccEEEEC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN   81 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~   81 (121)
                      .+.|=|+=||||||+++.|...+......+.+-
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~   39 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLI   39 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEE
Confidence            478889999999999999998765543344443

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.72  E-value=0.0078  Score=43.59  Aligned_cols=24  Identities=33%  Similarity=0.387  Sum_probs=19.3

Q ss_pred             EEEEECCCCchHHHHHHHHHcCCC
Q psy16345         49 LLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      .|+|=|+=|+||||+++.|...+.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            478899999999999999987654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=94.54  E-value=0.015  Score=40.44  Aligned_cols=27  Identities=30%  Similarity=0.354  Sum_probs=23.2

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      .+-.++|+|-..+|||||++.|.|...
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~~  137 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKNI  137 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CceEEEEEecCccchhhhhhhhhccce
Confidence            445689999999999999999999654

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=94.52  E-value=0.012  Score=46.30  Aligned_cols=27  Identities=22%  Similarity=0.326  Sum_probs=22.9

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+.+.+.|.|+||||||+-.|.|...+
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            467899999999999999988886543

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.52  E-value=0.0088  Score=43.25  Aligned_cols=20  Identities=50%  Similarity=0.732  Sum_probs=18.1

Q ss_pred             eCCeEEEEECCCCchHHHHH
Q psy16345         45 KPGELLAVMGPSGCGKTTLL   64 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl   64 (121)
                      +.|++..+.|-||+|||||-
T Consensus        12 ~~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            47889999999999999996

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.50  E-value=0.0094  Score=40.30  Aligned_cols=19  Identities=42%  Similarity=0.580  Sum_probs=17.3

Q ss_pred             EEEECCCCchHHHHHHHHH
Q psy16345         50 LAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~   68 (121)
                      +|++|--++|||||+..|.
T Consensus         6 i~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHH
Confidence            7899999999999998773

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.22  E-value=0.014  Score=46.13  Aligned_cols=27  Identities=26%  Similarity=0.361  Sum_probs=23.3

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+.+.+.|.|+||||||.-.|.|+..+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            457899999999999999998887644

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.18  E-value=0.0088  Score=41.22  Aligned_cols=16  Identities=31%  Similarity=0.513  Sum_probs=13.5

Q ss_pred             EEEEECCCCchHHHHH
Q psy16345         49 LLAVMGPSGCGKTTLL   64 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl   64 (121)
                      -+.|+|+.||||||.|
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4679999999999864

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=94.15  E-value=0.015  Score=45.91  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=23.1

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ++.+.+.|.|+||||||+-.|.|...+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            467899999999999999988887654

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.07  E-value=0.014  Score=40.84  Aligned_cols=28  Identities=25%  Similarity=0.431  Sum_probs=25.0

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++-..+.|.||.++|||||+++|+.++
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3666788999999999999999999987

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.00  E-value=0.01  Score=41.36  Aligned_cols=16  Identities=44%  Similarity=0.677  Sum_probs=13.5

Q ss_pred             EEEEECCCCchHHHHH
Q psy16345         49 LLAVMGPSGCGKTTLL   64 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl   64 (121)
                      .+.|.|+.||||||.|
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            3668999999999875

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=93.91  E-value=0.018  Score=39.13  Aligned_cols=19  Identities=32%  Similarity=0.406  Sum_probs=17.7

Q ss_pred             EEEECCCCchHHHHHHHHH
Q psy16345         50 LAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~   68 (121)
                      ++++|.-.+|||||+..|+
T Consensus        12 i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            6899999999999999995

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=93.89  E-value=0.0054  Score=37.25  Aligned_cols=21  Identities=29%  Similarity=0.294  Sum_probs=17.8

Q ss_pred             EeCCeEEEEECCCCchHHHHH
Q psy16345         44 VKPGELLAVMGPSGCGKTTLL   64 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl   64 (121)
                      +++|+.+.|..|.|||||+.+
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            468999999999999999544

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.71  E-value=0.031  Score=40.57  Aligned_cols=20  Identities=30%  Similarity=0.476  Sum_probs=17.4

Q ss_pred             CCeEEEEECCCCchHHHHHH
Q psy16345         46 PGELLAVMGPSGCGKTTLLN   65 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~   65 (121)
                      .+.++.|.|+.|+||||++.
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~  181 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVA  181 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHH
Confidence            36799999999999999874

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.60  E-value=0.015  Score=35.77  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=17.4

Q ss_pred             CCeEEEEECCCCchHHHHHHHH
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCL   67 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l   67 (121)
                      ..+...|.+|.|||||+++-.+
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~   28 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAA   28 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHH
Confidence            4566778999999999987443

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.57  E-value=0.02  Score=45.87  Aligned_cols=27  Identities=22%  Similarity=0.330  Sum_probs=22.4

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+.+.+.|.|+||||||+-.|.|...+
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            457899999999999999888776543

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=93.47  E-value=0.0088  Score=41.27  Aligned_cols=19  Identities=26%  Similarity=0.289  Sum_probs=17.2

Q ss_pred             EeCCeEEEEECCCCchHHH
Q psy16345         44 VKPGELLAVMGPSGCGKTT   62 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKST   62 (121)
                      +.+|+.+.|.+|.|||||+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTT
T ss_pred             hhcCCcEEEEECCCCCHHH
Confidence            4689999999999999996

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.42  E-value=0.019  Score=41.66  Aligned_cols=19  Identities=32%  Similarity=0.525  Sum_probs=17.9

Q ss_pred             EEEECCCCchHHHHHHHHH
Q psy16345         50 LAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~   68 (121)
                      +||+|.-++|||||+..|.
T Consensus        20 I~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            8999999999999999884

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.17  E-value=0.037  Score=36.73  Aligned_cols=26  Identities=15%  Similarity=0.002  Sum_probs=21.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .+-.+.+.||+|+||||+.+.++...
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            35577899999999999999888743

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.16  E-value=0.013  Score=39.72  Aligned_cols=28  Identities=18%  Similarity=0.242  Sum_probs=25.3

Q ss_pred             EeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         44 VKPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        44 i~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      +++-..+.|.||.++|||++...|+.++
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            4777899999999999999999998876

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=93.08  E-value=0.024  Score=45.31  Aligned_cols=27  Identities=22%  Similarity=0.258  Sum_probs=21.9

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ...+.+.|.|+||||||.-.|.|...+
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            346899999999999999977766543

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=93.00  E-value=0.031  Score=44.16  Aligned_cols=27  Identities=26%  Similarity=0.303  Sum_probs=23.0

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      ...+.+.|.|+||||||+-.|.+...+
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            457899999999999999988887643

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.98  E-value=0.032  Score=38.29  Aligned_cols=28  Identities=18%  Similarity=0.210  Sum_probs=22.3

Q ss_pred             CeEEEEECCCCchHHHHHHHHHcCCCCC
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAGRVKLD   74 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~gl~~~~   74 (121)
                      ..-+.|.|+.|+||+++.+.|.......
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~~s~~~   50 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHKLSDRS   50 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHHSTTT
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHhcCCc
Confidence            3457899999999999999998654433

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=92.92  E-value=0.04  Score=34.74  Aligned_cols=24  Identities=33%  Similarity=0.396  Sum_probs=19.9

Q ss_pred             CeEEEEECCCCchHHH-HHHHHHcC
Q psy16345         47 GELLAVMGPSGCGKTT-LLNCLAGR   70 (121)
Q Consensus        47 G~~~~liG~nGsGKST-Ll~~l~gl   70 (121)
                      |.+..++||=.||||| |++.+...
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHH
Confidence            6788899999999999 77776543

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.89  E-value=0.04  Score=34.29  Aligned_cols=29  Identities=14%  Similarity=0.103  Sum_probs=23.0

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHH-cCCCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLA-GRVKL   73 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~-gl~~~   73 (121)
                      +.|=.+-+.|-+||||||+.+.|. .++..
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~   33 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQF   33 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTS
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            356678899999999999999984 45443

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.84  E-value=0.023  Score=39.08  Aligned_cols=18  Identities=28%  Similarity=0.471  Sum_probs=17.0

Q ss_pred             EEEECCCCchHHHHHHHH
Q psy16345         50 LAVMGPSGCGKTTLLNCL   67 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l   67 (121)
                      ++++|--++|||||+..|
T Consensus        27 i~iiGHVD~GKSTL~~~L   44 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNI   44 (245)
T ss_dssp             EEEEECGGGTHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHH
Confidence            799999999999999888

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.75  E-value=0.029  Score=38.43  Aligned_cols=20  Identities=30%  Similarity=0.385  Sum_probs=17.4

Q ss_pred             EEEEECCCCchHHHHHHHHH
Q psy16345         49 LLAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        49 ~~~liG~nGsGKSTLl~~l~   68 (121)
                      -++++|--++|||||...|+
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            37899999999999987774

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.37  E-value=0.03  Score=41.18  Aligned_cols=19  Identities=37%  Similarity=0.667  Sum_probs=16.1

Q ss_pred             EEEECCCCchHHHHHHHHH
Q psy16345         50 LAVMGPSGCGKTTLLNCLA   68 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l~   68 (121)
                      ..|||++|.|||+++.-|+
T Consensus        46 ~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHH
Confidence            4689999999999986555

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.05  E-value=0.078  Score=33.05  Aligned_cols=19  Identities=37%  Similarity=0.655  Sum_probs=17.3

Q ss_pred             CCeEEEEECCCCchHHHHH
Q psy16345         46 PGELLAVMGPSGCGKTTLL   64 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl   64 (121)
                      +|.+..|+||=.|||||-|
T Consensus         1 ~G~L~li~GpMfsGKTt~L   19 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTEL   19 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHH
T ss_pred             CcEEEEEEecccCHHHHHH
Confidence            5889999999999999965

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.62  E-value=0.034  Score=37.34  Aligned_cols=22  Identities=32%  Similarity=0.401  Sum_probs=18.0

Q ss_pred             eCCeEEEEECCCCchHHHHHHH
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNC   66 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~   66 (121)
                      -.|+-+.++.|.|+|||+..-+
T Consensus        56 l~g~~~~i~apTGsGKT~~~~~   77 (237)
T d1gkub1          56 LRKESFAATAPTGVGKTSFGLA   77 (237)
T ss_dssp             HTTCCEECCCCBTSCSHHHHHH
T ss_pred             HCCCCEEEEecCCChHHHHHHH
Confidence            4688888999999999986443

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.52  E-value=0.11  Score=34.09  Aligned_cols=26  Identities=31%  Similarity=0.590  Sum_probs=21.0

Q ss_pred             CeEEEEE-CCCCchHHHHHHHHHcCCC
Q psy16345         47 GELLAVM-GPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        47 G~~~~li-G~nGsGKSTLl~~l~gl~~   72 (121)
                      |+++++. +.-|+||||+.--|+..+.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la   28 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALG   28 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHH
Confidence            6788998 7899999999877776543

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.94  E-value=0.046  Score=35.73  Aligned_cols=18  Identities=39%  Similarity=0.569  Sum_probs=15.1

Q ss_pred             CCeEEEEECCCCchHHHH
Q psy16345         46 PGELLAVMGPSGCGKTTL   63 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTL   63 (121)
                      .|+-+.|..|.|||||+.
T Consensus        39 ~~~~~il~apTGsGKT~~   56 (202)
T d2p6ra3          39 SGKNLLLAMPTAAGKTLL   56 (202)
T ss_dssp             TCSCEEEECSSHHHHHHH
T ss_pred             cCCCEEEEcCCCCchhHH
Confidence            466677999999999986

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=88.34  E-value=0.17  Score=32.52  Aligned_cols=26  Identities=31%  Similarity=0.487  Sum_probs=22.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHHcCCCC
Q psy16345         46 PGELLAVMGPSGCGKTTLLNCLAGRVKL   73 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~   73 (121)
                      |++++||.|-|  ||||.-.+|.-++..
T Consensus         1 p~kvI~VTGTn--GKTTt~~mi~~iL~~   26 (214)
T d1gg4a4           1 PARVVALTGSS--GKTSVKEMTAAILSQ   26 (214)
T ss_dssp             CCEEEEEECSS--CHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHHh
Confidence            56899999999  699999999887654

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=87.59  E-value=0.18  Score=32.37  Aligned_cols=24  Identities=25%  Similarity=0.209  Sum_probs=18.9

Q ss_pred             eEEEEECCC-CchHHHHHHHHHcCC
Q psy16345         48 ELLAVMGPS-GCGKTTLLNCLAGRV   71 (121)
Q Consensus        48 ~~~~liG~n-GsGKSTLl~~l~gl~   71 (121)
                      +.+-|.|.+ |.||||+--.|+..+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aL   26 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHH
Confidence            457789997 999999977666544

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.95  E-value=0.21  Score=31.91  Aligned_cols=18  Identities=28%  Similarity=0.447  Sum_probs=13.1

Q ss_pred             EEEECCCCchHHHHHHHH
Q psy16345         50 LAVMGPSGCGKTTLLNCL   67 (121)
Q Consensus        50 ~~liG~nGsGKSTLl~~l   67 (121)
                      .-|.+|.|+|||...-.+
T Consensus        26 ~lv~~pTGsGKT~i~~~~   43 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMI   43 (200)
T ss_dssp             EEEECCTTSCHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHH
Confidence            347899999999753333

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=86.45  E-value=0.23  Score=33.48  Aligned_cols=24  Identities=29%  Similarity=0.469  Sum_probs=19.6

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++||.|+=|+||||+.-.|+..+
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~L   25 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGL   25 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHH
Confidence            468899999999999987766544

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=85.70  E-value=0.26  Score=30.87  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=18.5

Q ss_pred             CCeEEEEECCCCchHHHHH-HHH
Q psy16345         46 PGELLAVMGPSGCGKTTLL-NCL   67 (121)
Q Consensus        46 ~G~~~~liG~nGsGKSTLl-~~l   67 (121)
                      .|.+..|+||=-|||||-| +.+
T Consensus         6 ~G~l~lI~GpMfSGKTteLi~~~   28 (141)
T d1xx6a1           6 HGWVEVIVGPMYSGKSEELIRRI   28 (141)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceeEEEEEeccccHHHHHHHHHH
Confidence            6889999999999999965 444

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.73  E-value=0.37  Score=31.32  Aligned_cols=24  Identities=33%  Similarity=0.477  Sum_probs=18.7

Q ss_pred             eEEEEE-CCCCchHHHHHHHHHcCC
Q psy16345         48 ELLAVM-GPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        48 ~~~~li-G~nGsGKSTLl~~l~gl~   71 (121)
                      +++++. +.=|+||||+.-.|+..+
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~l   26 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVAL   26 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHH
Confidence            356777 888999999988777644

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.55  E-value=0.46  Score=31.94  Aligned_cols=24  Identities=33%  Similarity=0.418  Sum_probs=18.7

Q ss_pred             eEEEEECCCCchHHHHHHHHHcCC
Q psy16345         48 ELLAVMGPSGCGKTTLLNCLAGRV   71 (121)
Q Consensus        48 ~~~~liG~nGsGKSTLl~~l~gl~   71 (121)
                      .++-+.|+=|.||||+.-.|+-.+
T Consensus         9 ~~i~~sGKGGVGKTTvaa~lA~~l   32 (296)
T d1ihua1           9 PYLFFTGKGGVGKTSISCATAIRL   32 (296)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCcChHHHHHHHHHHHH
Confidence            467789999999999776666543

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.29  E-value=0.53  Score=31.56  Aligned_cols=23  Identities=39%  Similarity=0.602  Sum_probs=17.7

Q ss_pred             CeEEEEECCCCchHHHHHHHHHc
Q psy16345         47 GELLAVMGPSGCGKTTLLNCLAG   69 (121)
Q Consensus        47 G~~~~liG~nGsGKSTLl~~l~g   69 (121)
                      ..++.+.|+=|.||||+.=.|+-
T Consensus        20 ~~iii~sGKGGVGKTT~a~nLA~   42 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAIAV   42 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45777889999999998555543

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=81.82  E-value=0.51  Score=30.41  Aligned_cols=26  Identities=38%  Similarity=0.405  Sum_probs=21.0

Q ss_pred             eCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345         45 KPGELLAVMGPSGCGKTTLLNCLAGRVK   72 (121)
Q Consensus        45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~   72 (121)
                      ++.+++||.|-|  ||||.-.+|.-++.
T Consensus        12 ~~~~~iAITGTn--GKTTt~~~l~~iL~   37 (207)
T d1j6ua3          12 EKKEEFAVTGTD--GKTTTTAMVAHVLK   37 (207)
T ss_dssp             HCCCEEEEECSS--SHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCC--CHHHHHHHHHHHHH
Confidence            456899999998  69999888876654