Psyllid ID: psy16364

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFE
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccHHHHHHHHHHHHHHHHccEEEccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccEEcccc
Coil and Loop (DISEMBL)
mskilkthpksvQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSsllaspspplsqpssrMAEMMFDEYSDRSSKIFNIkfssrmpnhmKYLGLLAMSKIlkthpksvqSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFE
Flexible Loop (DISEMBL)
mskilkthpksvqshRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMssllaspspplSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFE
Low Complexity Region (SEG)
MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMssllaspspplsqpssRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFE
Disordered region (IsUnstruct)
*****************LIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQ*********************************IFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYIT***
Disordered Region (DISOPRED)
MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFE
Disordered Region (DISEMBL)
MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSL************SRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFE
Disordered Region (DISPRO)
*SKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNF*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
O14617	1153	AP-3 complex subunit delt	yes	N/A	0.427	0.102	0.841	5e-67
O54774	1199	AP-3 complex subunit delt	yes	N/A	0.427	0.098	0.841	7e-67
Q865S1	1207	AP-3 complex subunit delt	yes	N/A	0.427	0.097	0.820	4e-66
P54362	1034	AP-3 complex subunit delt	yes	N/A	0.688	0.183	0.562	1e-57
Q54WN0	1143	AP-3 complex subunit delt	yes	N/A	0.557	0.134	0.484	2e-40
Q9UTL8	825	AP-3 complex subunit delt	yes	N/A	0.510	0.170	0.372	1e-22
Q9C744	869	AP-3 complex subunit delt	yes	N/A	0.507	0.161	0.283	3e-14
Q8I8U2	895	AP-1 complex subunit gamm	no	N/A	0.300	0.092	0.357	3e-10
Q86KI1	989	AP-2 complex subunit alph	no	N/A	0.445	0.124	0.281	2e-09
Q12028	832	AP-1 complex subunit gamm	yes	N/A	0.282	0.093	0.379	6e-09

>sp|O14617|AP3D1_HUMAN AP-3 complex subunit delta-1 OS=Homo sapiens GN=AP3D1 PE=1 SV=1

 Score =  254 bits (649), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 117/139 (84%), Positives = 132/139 (94%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
           MSKILKTHPKSVQSH+DLI+QCLDDKDESIRLRALDLLYGMVSKK LMEIVKKLM H+DK
Sbjct: 327 MSKILKTHPKSVQSHKDLILQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMTHVDK 386

Query: 61  AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
           AEGT YRDELL+K+IDICSQ+NYQYITNFEWY+++LVELTR+EGTRHG L+AAQM+DVAI
Sbjct: 387 AEGTTYRDELLTKIIDICSQSNYQYITNFEWYISILVELTRLEGTRHGHLIAAQMLDVAI 446

Query: 121 RVSAVRAFAVAQMSSLLAS 139
           RV A+R FAV+QMS+LL S
Sbjct: 447 RVKAIRKFAVSQMSALLDS 465

Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes.
Homo sapiens (taxid: 9606)

>sp|O54774|AP3D1_MOUSE AP-3 complex subunit delta-1 OS=Mus musculus GN=Ap3d1 PE=1 SV=1

 Score =  253 bits (647), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 117/139 (84%), Positives = 132/139 (94%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
           MSKILKTHPKSVQSH+DLI+QCLDDKDESIRLRALDLLYGMVSKK LMEIVKKLM H+DK
Sbjct: 327 MSKILKTHPKSVQSHKDLILQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMTHVDK 386

Query: 61  AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
           AEGT YRDELL+K+IDICSQ+NYQ+ITNFEWY+++LVELTR+EGTRHG L+AAQM+DVAI
Sbjct: 387 AEGTTYRDELLTKIIDICSQSNYQHITNFEWYISILVELTRLEGTRHGHLIAAQMLDVAI 446

Query: 121 RVSAVRAFAVAQMSSLLAS 139
           RV A+R FAV+QMSSLL S
Sbjct: 447 RVKAIRKFAVSQMSSLLDS 465

Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes.

Mus musculus (taxid: 10090)

>sp|Q865S1|AP3D1_BOVIN AP-3 complex subunit delta-1 OS=Bos taurus GN=AP3D1 PE=1 SV=2

 Score =  251 bits (641), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 114/139 (82%), Positives = 132/139 (94%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
           MSKIL+THPKSVQ+H+DL++QCLDDKDESIRLRALDLLYGMVSKK LMEIVKKLM H+DK
Sbjct: 327 MSKILRTHPKSVQAHKDLVLQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMTHVDK 386

Query: 61  AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
           AEGT YRDELL+K+IDICSQ+NYQ+ITNFEWY+++LVELTR+EGTRHG L+AAQM+DVAI
Sbjct: 387 AEGTTYRDELLTKIIDICSQSNYQHITNFEWYISILVELTRLEGTRHGHLIAAQMLDVAI 446

Query: 121 RVSAVRAFAVAQMSSLLAS 139
           RV A+R FAVAQMS+LL S
Sbjct: 447 RVKAIRRFAVAQMSALLDS 465

Part of the AP-3 complex, an adapter-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes.

Bos taurus (taxid: 9913)

>sp|P54362|AP3D_DROME AP-3 complex subunit delta OS=Drosophila melanogaster GN=g PE=1 SV=4

 Score =  223 bits (567), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/199 (56%), Positives = 152/199 (76%), Gaps = 9/199 (4%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
           MSKILKTHPKSVQ+H+DLI+ CLDDKDESIRLRALDLLYGMVSKK LMEIVK+L+ HM++
Sbjct: 328 MSKILKTHPKSVQAHKDLILACLDDKDESIRLRALDLLYGMVSKKNLMEIVKRLLGHMER 387

Query: 61  AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRME-GTRHGALVAAQMMDVA 119
           AEG+ YRDELL KVI+IC+Q++Y Y+TNFEWY+TVLVEL ++E G+RHG L+A Q++DVA
Sbjct: 388 AEGSAYRDELLYKVIEICAQSSYLYVTNFEWYLTVLVELIQLEAGSRHGRLIAEQLLDVA 447

Query: 120 IRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHM 179
           IRV  VR FAV +M++LL + +  +S  S+ M E+++      ++     +F+  + +  
Sbjct: 448 IRVPVVRQFAVNEMTNLLDTFT--VSAQSNSMYEVLY------AAAWIVGEFAGELEDAE 499

Query: 180 KYLGLLAMSKILKTHPKSV 198
           K L +L   ++L  H + V
Sbjct: 500 KTLNILLRPRLLPGHIQGV 518

May be a coat protein involved in the formation of specialized structures like pigment granules.

Drosophila melanogaster (taxid: 7227)

>sp|Q54WN0|AP3D_DICDI AP-3 complex subunit delta OS=Dictyostelium discoideum GN=ap3d1 PE=3 SV=1

 Score =  166 bits (419), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/157 (48%), Positives = 117/157 (74%), Gaps = 3/157 (1%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
           ++ I+K HPK+V  HRDL++ CL+D D SIRLRALDLL GM SKK + +IV KL+ H+D 
Sbjct: 308 LNNIMKIHPKAVSEHRDLVLNCLEDDDISIRLRALDLLPGMTSKKNIGDIVFKLLDHLDN 367

Query: 61  AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
           AEG  Y+++++ K+I++CS   YQ+IT+FEWY+ +LV+L++++ + HG L+A+Q++DV I
Sbjct: 368 AEG-QYKEQIIEKIIELCSMGTYQFITDFEWYINILVKLSQIQDSIHGKLIASQLLDVVI 426

Query: 121 RVSAVRAFAVAQMSSLLASPSPPLSQPS-SRMAEMMF 156
           RV  VRA++  QM  LL +P   +S P+   M E+++
Sbjct: 427 RVKIVRAYSTRQMIELLKNPK-LMSNPTEGGMCEVLY 462

Part of the AP-3 complex, an adaptor-related complex which is essential for the compartmentalization of the endocytic pathway.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9UTL8|AP3D_SCHPO AP-3 complex subunit delta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apl5 PE=3 SV=2

 Score =  107 bits (266), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 89/145 (61%), Gaps = 4/145 (2%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHM-- 58
           + K+  THP  V +  D+I++CL D D SIRLRALDL+  +V+K+ +  IVK LM+ +  
Sbjct: 314 LRKLANTHPSLVSAQLDIILKCLVDTDTSIRLRALDLVNEIVNKENIRTIVKTLMLQLIV 373

Query: 59  --DKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMM 116
             D++     R+   +++I++ S++ Y  I +FEW +TV V+L  + G   G L+  Q++
Sbjct: 374 SSDESAVEDIRNSTATRIIEMTSKSTYMNIADFEWLLTVYVDLANIPGIDTGTLLNNQII 433

Query: 117 DVAIRVSAVRAFAVAQMSSLLASPS 141
           D+ +RV A+R F+V   S  +  PS
Sbjct: 434 DLCVRVKALRPFSVDIFSQAILDPS 458

Part of the AP-3 complex, an adapter-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to the vacuole.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9C744|AP3D_ARATH AP-3 complex subunit delta OS=Arabidopsis thaliana GN=DELTA-ADR PE=1 SV=1

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 85/141 (60%), Gaps = 1/141 (0%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
           +S +   H  +V  +++++++ + D+D +++L AL LL  MV++  + EI + LM +  K
Sbjct: 320 LSIVAPKHLWAVLENKEVVVKAMSDEDPNVKLEALHLLMAMVNEDNVSEISRILMNYALK 379

Query: 61  AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
           ++  ++ +E++  V+  CS+N Y+ I +F+WY+++L E+ R+   + G  +  Q++D+ +
Sbjct: 380 SD-PLFCNEIIFSVLSACSRNAYEIIVDFDWYLSLLGEMARIPHCQRGEDIEHQLIDIGM 438

Query: 121 RVSAVRAFAVAQMSSLLASPS 141
           RV   R   V    +LL  P+
Sbjct: 439 RVRDARPQLVRVSWALLIDPA 459

Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8I8U2|AP1G_DICDI AP-1 complex subunit gamma OS=Dictyostelium discoideum GN=ap1g1 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 59/84 (70%), Gaps = 1/84 (1%)

Query: 177 NHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEI 236
           N+++Y+ L  +S+++ T  ++VQ HR+ I++CL D D SIR RALDL+Y +V++  +  +
Sbjct: 320 NNIRYVALNTLSRVVNTDIQAVQRHRNTIVECLKDPDVSIRCRALDLIYSLVTESNIRVL 379

Query: 237 VKKLMVHMDKAEGTMYRDELLSKV 260
           V++L+  +  A+   ++ EL++K+
Sbjct: 380 VRELLNFLLIADA-QFKSELVAKL 402

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. Also involved in early steps of phagocytosis and macropinocytosis.

Dictyostelium discoideum (taxid: 44689)

>sp|Q86KI1|AP2A2_DICDI AP-2 complex subunit alpha-2 OS=Dictyostelium discoideum GN=ap2a1-1 PE=3 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 72/128 (56%), Gaps = 5/128 (3%)

Query: 12  VQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELL 71
           ++ ++D ++  L D D SIR RALDLLYGM  K T   IV +L+ ++  A+  + R+EL+
Sbjct: 370 IKKYQDTVLLSLKDSDISIRRRALDLLYGMCDKNTCKHIVAELLSYLQTADYAI-REELV 428

Query: 72  SKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVA 131
            K+ ++      ++ +N+ WY+ V+++L    G      +  +++ +      ++A+A +
Sbjct: 429 IKIANLAE----KFASNYSWYVDVILQLITTAGDFVSDDIWFRVVKIVTNHEDIQAYAAS 484

Query: 132 QMSSLLAS 139
            + + L S
Sbjct: 485 TVFNALQS 492

Component of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.

Dictyostelium discoideum (taxid: 44689)

>sp|Q12028|AP1G1_YEAST AP-1 complex subunit gamma-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APL4 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 47/79 (59%)

Query: 170 KFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 229
           KF +   N+ KY+ L  + K++   P +VQ HR  I  CL D D SIR+RAL+L + ++ 
Sbjct: 345 KFLAGKDNNTKYVSLNTLLKVVPQEPTAVQRHRKFISHCLQDTDVSIRMRALELSFAILD 404

Query: 230 KKTLMEIVKKLMVHMDKAE 248
              L+E+V +LM  + K +
Sbjct: 405 DSNLVELVNELMKFLAKQD 423

Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The AP-1 complex interacts directly with clathrin.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
348504670	1252	PREDICTED: AP-3 complex subunit delta-1-	0.420	0.092	0.846	7e-66
348504672	1152	PREDICTED: AP-3 complex subunit delta-1-	0.420	0.100	0.846	9e-66
432856197	1258	PREDICTED: AP-3 complex subunit delta-1-	0.420	0.092	0.846	1e-65
113682038	1247	AP-3 complex subunit delta-1 [Danio reri	0.420	0.093	0.846	1e-65
296232451	1302	PREDICTED: AP-3 complex subunit delta-1	0.427	0.090	0.848	1e-65
397496939	1125	PREDICTED: AP-3 complex subunit delta-1	0.427	0.104	0.841	2e-65
355755293	1140	hypothetical protein EGM_09040, partial	0.427	0.103	0.841	2e-65
380792653	872	AP-3 complex subunit delta-1 isoform 2,	0.427	0.135	0.841	2e-65
119589823	883	hCG2004350, isoform CRA_e [Homo sapiens]	0.427	0.133	0.841	2e-65
33869469	865	AP3D1 protein, partial [Homo sapiens]	0.427	0.136	0.841	2e-65

>gi|348504670|ref|XP_003439884.1| PREDICTED: AP-3 complex subunit delta-1-like isoform 1 [Oreochromis niloticus]

 Score =  256 bits (654), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 116/137 (84%), Positives = 133/137 (97%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
           MSKILKTHPKSVQSH+DLI+QCLDDKDESIRLRALDLLYGMVSKK LMEIVKKLM+H+DK
Sbjct: 327 MSKILKTHPKSVQSHKDLILQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMIHVDK 386

Query: 61  AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
           AEGT YRDELL+K+IDICSQ+NYQYITNFEWY+++LVELTR+EGTRHG L+A+QM+DVAI
Sbjct: 387 AEGTTYRDELLTKIIDICSQSNYQYITNFEWYISILVELTRLEGTRHGHLIASQMLDVAI 446

Query: 121 RVSAVRAFAVAQMSSLL 137
           RV A+RAFAVAQM++LL
Sbjct: 447 RVKAIRAFAVAQMATLL 463

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348504672|ref|XP_003439885.1| PREDICTED: AP-3 complex subunit delta-1-like isoform 2 [Oreochromis niloticus]

 Score =  256 bits (653), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 116/137 (84%), Positives = 133/137 (97%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
           MSKILKTHPKSVQSH+DLI+QCLDDKDESIRLRALDLLYGMVSKK LMEIVKKLM+H+DK
Sbjct: 327 MSKILKTHPKSVQSHKDLILQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMIHVDK 386

Query: 61  AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
           AEGT YRDELL+K+IDICSQ+NYQYITNFEWY+++LVELTR+EGTRHG L+A+QM+DVAI
Sbjct: 387 AEGTTYRDELLTKIIDICSQSNYQYITNFEWYISILVELTRLEGTRHGHLIASQMLDVAI 446

Query: 121 RVSAVRAFAVAQMSSLL 137
           RV A+RAFAVAQM++LL
Sbjct: 447 RVKAIRAFAVAQMATLL 463

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432856197|ref|XP_004068401.1| PREDICTED: AP-3 complex subunit delta-1-like [Oryzias latipes]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 116/137 (84%), Positives = 133/137 (97%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
           MSKILKTHPKSVQSH+DLI+QCLDDKDESIRLRALDLLYGMVSKK LMEIVKKLM+H+DK
Sbjct: 327 MSKILKTHPKSVQSHKDLILQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMLHVDK 386

Query: 61  AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
           AEGT YRDELL+K+IDICSQ+NYQYITNFEWY+++LVELTR+EGTRHG L+A+QM+DVAI
Sbjct: 387 AEGTTYRDELLTKIIDICSQSNYQYITNFEWYISILVELTRLEGTRHGHLIASQMLDVAI 446

Query: 121 RVSAVRAFAVAQMSSLL 137
           RV A+RAFAVAQM++LL
Sbjct: 447 RVKAIRAFAVAQMATLL 463

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|113682038|ref|NP_001038480.1| AP-3 complex subunit delta-1 [Danio rerio] gi|213627810|gb|AAI71356.1| Si:ch211-129c21.6 [Danio rerio]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 116/137 (84%), Positives = 133/137 (97%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
           MSKILKTHPKSVQSH+DLI+QCLDDKDESIRLRALDLLYGMVSKK LMEIVKKLM+H+DK
Sbjct: 327 MSKILKTHPKSVQSHKDLILQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMLHVDK 386

Query: 61  AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
           AEGT YRDELL+K+IDICSQ+NYQYITNFEWY+++LVELTR+EGTRHG L+A+QM+DVAI
Sbjct: 387 AEGTTYRDELLTKIIDICSQSNYQYITNFEWYISILVELTRLEGTRHGHLIASQMLDVAI 446

Query: 121 RVSAVRAFAVAQMSSLL 137
           RV A+RAFAVAQM++LL
Sbjct: 447 RVKAIRAFAVAQMATLL 463

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296232451|ref|XP_002761601.1| PREDICTED: AP-3 complex subunit delta-1 [Callithrix jacchus]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 118/139 (84%), Positives = 132/139 (94%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
           MSKILKTHPKSVQSH+DLI+QCLDDKDESIRLRALDLLYGMVSKK LMEIVKKLM H+DK
Sbjct: 412 MSKILKTHPKSVQSHKDLILQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMTHVDK 471

Query: 61  AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
           AEGT YRDELL+K+IDICSQ+NYQYITNFEWY+++LVELTR+EGTRHG L+AAQM+DVAI
Sbjct: 472 AEGTTYRDELLTKIIDICSQSNYQYITNFEWYISILVELTRLEGTRHGHLIAAQMLDVAI 531

Query: 121 RVSAVRAFAVAQMSSLLAS 139
           RV A+R FAV+QMSSLL S
Sbjct: 532 RVKAIRKFAVSQMSSLLDS 550

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397496939|ref|XP_003819278.1| PREDICTED: AP-3 complex subunit delta-1 [Pan paniscus]

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/139 (84%), Positives = 132/139 (94%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
           MSKILKTHPKSVQSH+DLI+QCLDDKDESIRLRALDLLYGMVSKK LMEIVKKLM H+DK
Sbjct: 237 MSKILKTHPKSVQSHKDLILQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMTHVDK 296

Query: 61  AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
           AEGT YRDELL+K+IDICSQ+NYQYITNFEWY+++LVELTR+EGTRHG L+AAQM+DVAI
Sbjct: 297 AEGTTYRDELLTKIIDICSQSNYQYITNFEWYISILVELTRLEGTRHGHLIAAQMLDVAI 356

Query: 121 RVSAVRAFAVAQMSSLLAS 139
           RV A+R FAV+QMS+LL S
Sbjct: 357 RVKAIRKFAVSQMSALLDS 375

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355755293|gb|EHH59040.1| hypothetical protein EGM_09040, partial [Macaca fascicularis]

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/139 (84%), Positives = 132/139 (94%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
           MSKILKTHPKSVQSH+DLI+QCLDDKDESIRLRALDLLYGMVSKK LMEIVKKLM H+DK
Sbjct: 254 MSKILKTHPKSVQSHKDLILQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMTHVDK 313

Query: 61  AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
           AEGT YRDELL+K+IDICSQ+NYQYITNFEWY+++LVELTR+EGTRHG L+AAQM+DVAI
Sbjct: 314 AEGTTYRDELLTKIIDICSQSNYQYITNFEWYISILVELTRLEGTRHGHLIAAQMLDVAI 373

Query: 121 RVSAVRAFAVAQMSSLLAS 139
           RV A+R FAV+QMS+LL S
Sbjct: 374 RVKAIRKFAVSQMSALLDS 392

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|380792653|gb|AFE68202.1| AP-3 complex subunit delta-1 isoform 2, partial [Macaca mulatta]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/139 (84%), Positives = 132/139 (94%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
           MSKILKTHPKSVQSH+DLI+QCLDDKDESIRLRALDLLYGMVSKK LMEIVKKLM H+DK
Sbjct: 327 MSKILKTHPKSVQSHKDLILQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMTHVDK 386

Query: 61  AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
           AEGT YRDELL+K+IDICSQ+NYQYITNFEWY+++LVELTR+EGTRHG L+AAQM+DVAI
Sbjct: 387 AEGTTYRDELLTKIIDICSQSNYQYITNFEWYISILVELTRLEGTRHGHLIAAQMLDVAI 446

Query: 121 RVSAVRAFAVAQMSSLLAS 139
           RV A+R FAV+QMS+LL S
Sbjct: 447 RVKAIRKFAVSQMSALLDS 465

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|119589823|gb|EAW69417.1| hCG2004350, isoform CRA_e [Homo sapiens]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/139 (84%), Positives = 132/139 (94%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
           MSKILKTHPKSVQSH+DLI+QCLDDKDESIRLRALDLLYGMVSKK LMEIVKKLM H+DK
Sbjct: 55  MSKILKTHPKSVQSHKDLILQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMTHVDK 114

Query: 61  AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
           AEGT YRDELL+K+IDICSQ+NYQYITNFEWY+++LVELTR+EGTRHG L+AAQM+DVAI
Sbjct: 115 AEGTTYRDELLTKIIDICSQSNYQYITNFEWYISILVELTRLEGTRHGHLIAAQMLDVAI 174

Query: 121 RVSAVRAFAVAQMSSLLAS 139
           RV A+R FAV+QMS+LL S
Sbjct: 175 RVKAIRKFAVSQMSALLDS 193

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|33869469|gb|AAH05142.1| AP3D1 protein, partial [Homo sapiens]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/139 (84%), Positives = 132/139 (94%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
           MSKILKTHPKSVQSH+DLI+QCLDDKDESIRLRALDLLYGMVSKK LMEIVKKLM H+DK
Sbjct: 327 MSKILKTHPKSVQSHKDLILQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMTHVDK 386

Query: 61  AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
           AEGT YRDELL+K+IDICSQ+NYQYITNFEWY+++LVELTR+EGTRHG L+AAQM+DVAI
Sbjct: 387 AEGTTYRDELLTKIIDICSQSNYQYITNFEWYISILVELTRLEGTRHGHLIAAQMLDVAI 446

Query: 121 RVSAVRAFAVAQMSSLLAS 139
           RV A+R FAV+QMS+LL S
Sbjct: 447 RVKAIRKFAVSQMSALLDS 465

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
UNIPROTKB|E7EMM2	984	AP3D1 "AP-3 complex subunit de	0.481	0.135	0.849	3.6e-59
UNIPROTKB|G5E988	1112	AP3D1 "AP-3 complex subunit de	0.481	0.119	0.849	1.1e-58
UNIPROTKB|O14617	1153	AP3D1 "AP-3 complex subunit de	0.481	0.115	0.849	1.4e-58
ZFIN|ZDB-GENE-050208-437	1247	ap3d1 "adaptor-related protein	0.481	0.106	0.857	5.7e-58
MGI|MGI:107734	1199	Ap3d1 "adaptor-related protein	0.481	0.110	0.842	6.4e-58
UNIPROTKB|E1BWK3	1153	AP3D1 "Uncharacterized protein	0.481	0.115	0.849	9.4e-58
UNIPROTKB|E1C262	1208	AP3D1 "Uncharacterized protein	0.481	0.110	0.849	1.1e-57
UNIPROTKB|Q865S1	1207	AP3D1 "AP-3 complex subunit de	0.481	0.110	0.827	1.8e-57
UNIPROTKB|E2QXV5	1216	AP3D1 "Uncharacterized protein	0.481	0.109	0.812	7.9e-56
FB|FBgn0001087	1034	g "garnet" [Drosophila melanog	0.688	0.183	0.547	5.7e-49

UNIPROTKB|E7EMM2 AP3D1 "AP-3 complex subunit delta-1" [Homo sapiens (taxid:9606)]

 Score = 600 (216.3 bits), Expect = 3.6e-59, Sum P(2) = 3.6e-59
 Identities = 113/133 (84%), Positives = 127/133 (95%)

Query:     1 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
             MSKILKTHPKSVQSH+DLI+QCLDDKDESIRLRALDLLYGMVSKK LMEIVKKLM H+DK
Sbjct:   158 MSKILKTHPKSVQSHKDLILQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMTHVDK 217

Query:    61 AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
             AEGT YRDELL+K+IDICSQ+NYQYITNFEWY+++LVELTR+EGTRHG L+AAQM+DVAI
Sbjct:   218 AEGTTYRDELLTKIIDICSQSNYQYITNFEWYISILVELTRLEGTRHGHLIAAQMLDVAI 277

Query:   121 RVSAVRAFAVAQM 133
             RV A+R FAV+QM
Sbjct:   278 RVKAIRKFAVSQM 290

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

UNIPROTKB|G5E988 AP3D1 "AP-3 complex subunit delta-1" [Homo sapiens (taxid:9606)]

 Score = 600 (216.3 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
 Identities = 113/133 (84%), Positives = 127/133 (95%)

Query:     1 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
             MSKILKTHPKSVQSH+DLI+QCLDDKDESIRLRALDLLYGMVSKK LMEIVKKLM H+DK
Sbjct:   236 MSKILKTHPKSVQSHKDLILQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMTHVDK 295

Query:    61 AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
             AEGT YRDELL+K+IDICSQ+NYQYITNFEWY+++LVELTR+EGTRHG L+AAQM+DVAI
Sbjct:   296 AEGTTYRDELLTKIIDICSQSNYQYITNFEWYISILVELTRLEGTRHGHLIAAQMLDVAI 355

Query:   121 RVSAVRAFAVAQM 133
             RV A+R FAV+QM
Sbjct:   356 RVKAIRKFAVSQM 368

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

UNIPROTKB|O14617 AP3D1 "AP-3 complex subunit delta-1" [Homo sapiens (taxid:9606)]

 Score = 600 (216.3 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
 Identities = 113/133 (84%), Positives = 127/133 (95%)

Query:     1 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
             MSKILKTHPKSVQSH+DLI+QCLDDKDESIRLRALDLLYGMVSKK LMEIVKKLM H+DK
Sbjct:   327 MSKILKTHPKSVQSHKDLILQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMTHVDK 386

Query:    61 AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
             AEGT YRDELL+K+IDICSQ+NYQYITNFEWY+++LVELTR+EGTRHG L+AAQM+DVAI
Sbjct:   387 AEGTTYRDELLTKIIDICSQSNYQYITNFEWYISILVELTRLEGTRHGHLIAAQMLDVAI 446

Query:   121 RVSAVRAFAVAQM 133
             RV A+R FAV+QM
Sbjct:   447 RVKAIRKFAVSQM 459

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0033365 "protein localization to organelle" evidence=IEA

GO:0043195 "terminal bouton" evidence=IEA

GO:0048007 "antigen processing and presentation, exogenous lipid antigen via MHC class Ib" evidence=IEA

GO:0048499 "synaptic vesicle membrane organization" evidence=IEA

GO:0051138 "positive regulation of NK T cell differentiation" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0010008 "endosome membrane" evidence=IDA

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISS

GO:0008089 "anterograde axon cargo transport" evidence=ISS

GO:0005215 "transporter activity" evidence=TAS

GO:0005794 "Golgi apparatus" evidence=TAS

GO:0006726 "eye pigment biosynthetic process" evidence=TAS

GO:0061088 "regulation of sequestering of zinc ion" evidence=IMP

ZFIN|ZDB-GENE-050208-437 ap3d1 "adaptor-related protein complex 3, delta 1 subunit" [Danio rerio (taxid:7955)]

 Score = 606 (218.4 bits), Expect = 5.7e-58, P = 5.7e-58
 Identities = 114/133 (85%), Positives = 129/133 (96%)

Query:     1 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
             MSKILKTHPKSVQSH+DLI+QCLDDKDESIRLRALDLLYGMVSKK LMEIVKKLM+H+DK
Sbjct:   327 MSKILKTHPKSVQSHKDLILQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMLHVDK 386

Query:    61 AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
             AEGT YRDELL+K+IDICSQ+NYQYITNFEWY+++LVELTR+EGTRHG L+A+QM+DVAI
Sbjct:   387 AEGTTYRDELLTKIIDICSQSNYQYITNFEWYISILVELTRLEGTRHGHLIASQMLDVAI 446

Query:   121 RVSAVRAFAVAQM 133
             RV A+RAFAVAQM
Sbjct:   447 RVKAIRAFAVAQM 459

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

MGI|MGI:107734 Ap3d1 "adaptor-related protein complex 3, delta 1 subunit" [Mus musculus (taxid:10090)]

 Score = 595 (214.5 bits), Expect = 6.4e-58, Sum P(2) = 6.4e-58
 Identities = 112/133 (84%), Positives = 127/133 (95%)

Query:     1 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
             MSKILKTHPKSVQSH+DLI+QCLDDKDESIRLRALDLLYGMVSKK LMEIVKKLM H+DK
Sbjct:   327 MSKILKTHPKSVQSHKDLILQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMTHVDK 386

Query:    61 AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
             AEGT YRDELL+K+IDICSQ+NYQ+ITNFEWY+++LVELTR+EGTRHG L+AAQM+DVAI
Sbjct:   387 AEGTTYRDELLTKIIDICSQSNYQHITNFEWYISILVELTRLEGTRHGHLIAAQMLDVAI 446

Query:   121 RVSAVRAFAVAQM 133
             RV A+R FAV+QM
Sbjct:   447 RVKAIRKFAVSQM 459

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=TAS

GO:0006810 "transport" evidence=IEA

GO:0006829 "zinc ion transport" evidence=TAS

GO:0006886 "intracellular protein transport" evidence=IMP;TAS

GO:0008089 "anterograde axon cargo transport" evidence=IMP

GO:0008565 "protein transporter activity" evidence=IEA

GO:0010008 "endosome membrane" evidence=ISO;IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0019882 "antigen processing and presentation" evidence=IMP

GO:0030117 "membrane coat" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0033365 "protein localization to organelle" evidence=IMP

GO:0043195 "terminal bouton" evidence=IDA

GO:0048007 "antigen processing and presentation, exogenous lipid antigen via MHC class Ib" evidence=IMP

GO:0048490 "anterograde synaptic vesicle transport" evidence=IMP

GO:0048499 "synaptic vesicle membrane organization" evidence=IMP

GO:0051138 "positive regulation of NK T cell differentiation" evidence=IMP

GO:0061088 "regulation of sequestering of zinc ion" evidence=ISO;TAS

UNIPROTKB|E1BWK3 AP3D1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 603 (217.3 bits), Expect = 9.4e-58, P = 9.4e-58
 Identities = 113/133 (84%), Positives = 128/133 (96%)

Query:     1 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
             MSKILKTHPKSVQSH+DLI+QCLDDKDESIRLRALDLLYGMVSKK LMEIVKKLM+H+DK
Sbjct:   327 MSKILKTHPKSVQSHKDLILQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMIHVDK 386

Query:    61 AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
             AEGT YRDELL+K+IDICSQ+NYQYITNFEWY+++LVELTR+EGTRHG L+AAQM+DVAI
Sbjct:   387 AEGTTYRDELLTKIIDICSQSNYQYITNFEWYISILVELTRLEGTRHGHLIAAQMLDVAI 446

Query:   121 RVSAVRAFAVAQM 133
             RV A+R FAV+QM
Sbjct:   447 RVKAIRKFAVSQM 459

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

UNIPROTKB|E1C262 AP3D1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 603 (217.3 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 113/133 (84%), Positives = 128/133 (96%)

Query:     1 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
             MSKILKTHPKSVQSH+DLI+QCLDDKDESIRLRALDLLYGMVSKK LMEIVKKLM+H+DK
Sbjct:   327 MSKILKTHPKSVQSHKDLILQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMIHVDK 386

Query:    61 AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
             AEGT YRDELL+K+IDICSQ+NYQYITNFEWY+++LVELTR+EGTRHG L+AAQM+DVAI
Sbjct:   387 AEGTTYRDELLTKIIDICSQSNYQYITNFEWYISILVELTRLEGTRHGHLIAAQMLDVAI 446

Query:   121 RVSAVRAFAVAQM 133
             RV A+R FAV+QM
Sbjct:   447 RVKAIRKFAVSQM 459

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008089 "anterograde axon cargo transport" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0033365 "protein localization to organelle" evidence=IEA

GO:0043195 "terminal bouton" evidence=IEA

GO:0048007 "antigen processing and presentation, exogenous lipid antigen via MHC class Ib" evidence=IEA

GO:0048490 "anterograde synaptic vesicle transport" evidence=IEA

GO:0048499 "synaptic vesicle membrane organization" evidence=IEA

GO:0051138 "positive regulation of NK T cell differentiation" evidence=IEA

GO:0061088 "regulation of sequestering of zinc ion" evidence=IEA

UNIPROTKB|Q865S1 AP3D1 "AP-3 complex subunit delta-1" [Bos taurus (taxid:9913)]

 Score = 591 (213.1 bits), Expect = 1.8e-57, Sum P(2) = 1.8e-57
 Identities = 110/133 (82%), Positives = 127/133 (95%)

Query:     1 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
             MSKIL+THPKSVQ+H+DL++QCLDDKDESIRLRALDLLYGMVSKK LMEIVKKLM H+DK
Sbjct:   327 MSKILRTHPKSVQAHKDLVLQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMTHVDK 386

Query:    61 AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
             AEGT YRDELL+K+IDICSQ+NYQ+ITNFEWY+++LVELTR+EGTRHG L+AAQM+DVAI
Sbjct:   387 AEGTTYRDELLTKIIDICSQSNYQHITNFEWYISILVELTRLEGTRHGHLIAAQMLDVAI 446

Query:   121 RVSAVRAFAVAQM 133
             RV A+R FAVAQM
Sbjct:   447 RVKAIRRFAVAQM 459

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISS

GO:0008089 "anterograde axon cargo transport" evidence=ISS

GO:0000139 "Golgi membrane" evidence=IEA

GO:0061088 "regulation of sequestering of zinc ion" evidence=IEA

GO:0051138 "positive regulation of NK T cell differentiation" evidence=IEA

GO:0048499 "synaptic vesicle membrane organization" evidence=IEA

GO:0048007 "antigen processing and presentation, exogenous lipid antigen via MHC class Ib" evidence=IEA

GO:0043195 "terminal bouton" evidence=IEA

GO:0033365 "protein localization to organelle" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|E2QXV5 AP3D1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 576 (207.8 bits), Expect = 7.9e-56, Sum P(2) = 7.9e-56
 Identities = 108/133 (81%), Positives = 126/133 (94%)

Query:     1 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
             MSKIL+THPKSVQ+H+DL++QCLDDKDESIRLRALDLLYGMVSKK L+EIVKKLM H+DK
Sbjct:   327 MSKILRTHPKSVQAHKDLVLQCLDDKDESIRLRALDLLYGMVSKKNLVEIVKKLMSHVDK 386

Query:    61 AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
             AEGT YRDELL+K+IDICSQ NYQ+ITNF+WY++VLVELTR+EGTRHG L+AAQM+DVAI
Sbjct:   387 AEGTTYRDELLTKIIDICSQCNYQHITNFQWYISVLVELTRLEGTRHGHLIAAQMLDVAI 446

Query:   121 RVSAVRAFAVAQM 133
             RV A+R FAV+QM
Sbjct:   447 RVKAIRKFAVSQM 459

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

FB|FBgn0001087 g "garnet" [Drosophila melanogaster (taxid:7227)]

 Score = 520 (188.1 bits), Expect = 5.7e-49, P = 5.7e-49
 Identities = 109/199 (54%), Positives = 143/199 (71%)

Query:     1 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
             MSKILKTHPKSVQ+H+DLI+ CLDDKDESIRLRALDLLYGMVSKK LMEIVK+L+ HM++
Sbjct:   328 MSKILKTHPKSVQAHKDLILACLDDKDESIRLRALDLLYGMVSKKNLMEIVKRLLGHMER 387

Query:    61 AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRME-GTRHGALVAAQMMDVA 119
             AEG+ YRDELL KVI+IC+Q++Y Y+TNFEWY+TVLVEL ++E G+RHG L+A Q++DVA
Sbjct:   388 AEGSAYRDELLYKVIEICAQSSYLYVTNFEWYLTVLVELIQLEAGSRHGRLIAEQLLDVA 447

Query:   120 IRVSAVRAFAVAQMXXXXXXXXXXXXXXXXRMAEMMFDEYSDRSSKIFNIKFSSRMPNHM 179
             IRV  VR FAV +M                 M E+++      ++ I   +F+  + +  
Sbjct:   448 IRVPVVRQFAVNEMTNLLDTFTVSAQSNS--MYEVLY-----AAAWIVG-EFAGELEDAE 499

Query:   180 KYLGLLAMSKILKTHPKSV 198
             K L +L   ++L  H + V
Sbjct:   500 KTLNILLRPRLLPGHIQGV 518

GO:0006726 "eye pigment biosynthetic process" evidence=IEP;IMP;IDA

GO:0006727 "ommochrome biosynthetic process" evidence=IMP

GO:0008055 "ocellus pigment biosynthetic process" evidence=IDA

GO:0008057 "eye pigment granule organization" evidence=IMP

GO:0030131 "clathrin adaptor complex" evidence=ISS

GO:0030123 "AP-3 adaptor complex" evidence=NAS

GO:0005798 "Golgi-associated vesicle" evidence=NAS

GO:0006895 "Golgi to endosome transport" evidence=NAS

GO:0007041 "lysosomal transport" evidence=TAS

GO:0007040 "lysosome organization" evidence=ISS

GO:0005795 "Golgi stack" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0048072 "compound eye pigmentation" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0007220 "Notch receptor processing" evidence=IMP

GO:0006897 "endocytosis" evidence=IMP

GO:0005770 "late endosome" evidence=IDA

GO:0060967 "negative regulation of gene silencing by RNA" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O54774	AP3D1_MOUSE	No assigned EC number	0.8417	0.4275	0.0984	yes	N/A
O14617	AP3D1_HUMAN	No assigned EC number	0.8417	0.4275	0.1023	yes	N/A
P54362	AP3D_DROME	No assigned EC number	0.5628	0.6884	0.1837	yes	N/A
Q865S1	AP3D1_BOVIN	No assigned EC number	0.8201	0.4275	0.0977	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	276
pfam01602	522	pfam01602, Adaptin_N, Adaptin N terminal region	6e-29
pfam01602	522	pfam01602, Adaptin_N, Adaptin N terminal region	4e-19

>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region

 Score =  114 bits (287), Expect = 6e-29
 Identities = 46/139 (33%), Positives = 81/139 (58%), Gaps = 8/139 (5%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLD-DKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHM- 58
           ++KIL+ HP +VQ H DLI+ CL  D D SIRLRALDLLY +V +  + EIVK+L+ ++ 
Sbjct: 289 LNKILEKHPPAVQ-HLDLIIFCLKTDDDISIRLRALDLLYKLVDESNVKEIVKELLKYVS 347

Query: 59  DKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDV 118
           + A+   ++ +L+  +  +  +    + T+ EW + VL+EL  + G+     +   + D+
Sbjct: 348 EIADPE-FKIKLVKAIGRLAEK----FPTDAEWCIDVLLELLSLAGSYVVDEIVEVIRDI 402

Query: 119 AIRVSAVRAFAVAQMSSLL 137
             +   +R + +  +  LL
Sbjct: 403 IRKYPELREYILEHLCELL 421

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522

>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region

 Score = 86.1 bits (214), Expect = 4e-19
 Identities = 39/110 (35%), Positives = 67/110 (60%), Gaps = 8/110 (7%)

Query: 169 IKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLD-DKDESIRLRALDLLYGM 227
            +  S    +++Y+ L  ++KIL+ HP +VQ H DLI+ CL  D D SIRLRALDLLY +
Sbjct: 271 GRLLSSPDENLRYVALRNLNKILEKHPPAVQ-HLDLIIFCLKTDDDISIRLRALDLLYKL 329

Query: 228 VSKKTLMEIVKKLMVHM-DKAEGTMYRDELLSKVIDICSQNNYQYITNFE 276
           V +  + EIVK+L+ ++ + A+   ++ +L+  +  +      ++ T+ E
Sbjct: 330 VDESNVKEIVKELLKYVSEIADPE-FKIKLVKAIGRLAE----KFPTDAE 374

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
KOG1059|consensus	877		100.0
KOG1062|consensus	866		100.0
KOG1059|consensus	877		100.0
KOG1077|consensus	938		99.98
KOG1077|consensus	938		99.97
KOG1062|consensus	866		99.97
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.87
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.79
PTZ00429	746	beta-adaptin; Provisional	99.66
PTZ00429	746	beta-adaptin; Provisional	99.57
KOG1058|consensus	948		99.5
KOG1058|consensus	948		99.41
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.06
KOG1078|consensus	865		98.79
KOG1061|consensus	734		98.54
KOG1060|consensus	968		97.73
KOG1078|consensus	865		97.37
PF14764	459	SPG48: AP-5 complex subunit, vesicle trafficking	97.34
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.16
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	96.77
PRK09687	280	putative lyase; Provisional	96.74
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	96.68
KOG2023|consensus	885		96.64
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	96.53
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.48
KOG1060|consensus	968		96.44
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	96.42
PRK09687	280	putative lyase; Provisional	96.32
KOG2171|consensus	1075		96.25
KOG1824|consensus	1233		96.1
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	95.91
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	95.51
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	95.51
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	95.41
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	94.97
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	94.9
KOG1020|consensus	1692		94.59
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	94.4
KOG1061|consensus	734		94.3
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.21
KOG1020|consensus	1692		93.79
KOG2259|consensus	823		93.67
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	93.6
COG5096	757	Vesicle coat complex, various subunits [Intracellu	93.55
KOG0915|consensus	1702		93.52
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	93.43
COG5096	757	Vesicle coat complex, various subunits [Intracellu	92.61
KOG0212|consensus	675		92.08
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	92.06
KOG0212|consensus	675		91.85
KOG2213|consensus	460		91.31
KOG0213|consensus	1172		91.18
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	91.01
KOG0166|consensus	514		90.71
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	90.44
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	90.35
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	90.12
KOG1242|consensus	569		89.94
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	89.37
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	89.17
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	89.07
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	88.97
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	88.57
PF07539	141	DRIM: Down-regulated in metastasis; InterPro: IPR0	88.11
KOG2171|consensus	1075		87.42
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	87.39
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	86.63
KOG2259|consensus	823		86.33
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	86.33
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	86.31
KOG2025|consensus	892		86.07
KOG1967|consensus	1030		85.6
COG1460	114	Uncharacterized protein conserved in archaea [Func	85.16
KOG4224|consensus	550		84.61
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	84.55
KOG1824|consensus	1233		84.24
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	83.73
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	83.1
PF14663	115	RasGEF_N_2: Rapamycin-insensitive companion of mTO	82.49
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	81.85
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	81.79
PF07539	141	DRIM: Down-regulated in metastasis; InterPro: IPR0	81.71
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	81.59
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	81.43
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	80.59

>KOG1059|consensus

Probab=100.00  E-value=9.8e-38  Score=292.14  Aligned_cols=236  Identities=41%  Similarity=0.617  Sum_probs=208.2

Q ss_pred             CccccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhc--CCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHh
Q psy16364          1 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMV--SKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDIC   78 (276)
Q Consensus         1 l~~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~--~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~   78 (276)
                      |+|++.+||+++....+++.+-|+||||||..+|++++++++  +|+|+-.+.|.+.+.|.+                  
T Consensus       168 lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffklltt------------------  229 (877)
T KOG1059|consen  168 LYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVT------------------  229 (877)
T ss_pred             HHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhc------------------
Confidence            578999999999999999999999999999999999999999  468999999988876543                  


Q ss_pred             hhcCCccCCChhhHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCC----CCchh
Q psy16364         79 SQNNYQYITNFEWYMTVLVELTRMEG---TRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQ----PSSRM  151 (276)
Q Consensus        79 ~~~~y~~~~~~~W~v~~ll~ll~~~~---~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~~~~  151 (276)
                              .+..|..+++++|+.-..   +..++++.+.+.+++.+        +.+|+.+|||++++...    ..+..
T Consensus       230 --------SsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~s--------T~AmSLlYECvNTVVa~s~s~g~~d~  293 (877)
T KOG1059|consen  230 --------SSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMES--------TVAMSLLYECVNTVVAVSMSSGMSDH  293 (877)
T ss_pred             --------cCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHh--------hHHHHHHHHHHHHheeehhccCCCCc
Confidence                    246799999999987532   35678888888888853        45778999999988642    11122


Q ss_pred             hhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc
Q psy16364        152 AEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK  231 (276)
Q Consensus       152 ~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~  231 (276)
                      .+...-|+      .=++.|+++.|+|+||+||.|+.|+++.+|.+++.|.+.|+.||.|.|++||-||+||+++|++++
T Consensus       294 ~asiqLCv------qKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskk  367 (877)
T KOG1059|consen  294 SASIQLCV------QKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKK  367 (877)
T ss_pred             HHHHHHHH------HHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhh
Confidence            34555566      779999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhccCCccccCCCC
Q psy16364        232 TLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFE  276 (276)
Q Consensus       232 n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~~y~~~~~f~  276 (276)
                      |+++||+.||+|+..+++.+||.+++.+|+.+|+++||++|+||+
T Consensus       368 Nl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFE  412 (877)
T KOG1059|consen  368 NLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFE  412 (877)
T ss_pred             hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHH
Confidence            999999999999999998899999999999999999999999996

>KOG1062|consensus

Probab=100.00  E-value=8e-38  Score=295.95  Aligned_cols=248  Identities=20%  Similarity=0.322  Sum_probs=208.2

Q ss_pred             ccccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC-----CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Q psy16364          2 SKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK-----KTLMEIVKKLMVHMDKAEGTMYRDELLSKVID   76 (276)
Q Consensus         2 ~~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~-----~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~   76 (276)
                      .|++++.|++++.+.+...++|+|+|+||...++.++.+||..     +.++++++.|++.|++.....|.         
T Consensus       167 ~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~ys---------  237 (866)
T KOG1062|consen  167 VRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYS---------  237 (866)
T ss_pred             HHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCC---------
Confidence            5889999999999999999999999999999999999999975     24678888888888765443332         


Q ss_pred             HhhhcCCccC-CChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHH-HHHHHHHHhhcCCCCCCCCCCchhhhh
Q psy16364         77 ICSQNNYQYI-TNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRA-FAVAQMSSLLASPSPPLSQPSSRMAEM  154 (276)
Q Consensus        77 ~~~~~~y~~~-~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~  154 (276)
                          .+|.++ .++||+|..+++++++.|.. +.+.++.+.+++.++-.-.+ .-+...+.+|||++++....++  +++
T Consensus       238 ----peydv~gi~dPFLQi~iLrlLriLGq~-d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~--~~L  310 (866)
T KOG1062|consen  238 ----PEYDVHGISDPFLQIRILRLLRILGQN-DADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSN--SGL  310 (866)
T ss_pred             ----CccCccCCCchHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCC--chH
Confidence                234442 37799999999999999875 57888888888876532111 1123446788888887655442  344


Q ss_pred             hHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHH
Q psy16364        155 MFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLM  234 (276)
Q Consensus       155 L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~  234 (276)
                      ...++      +|+|+|+.+.++|+||+||.+|.+.++.+|.++++||.+|++||+|+|.+||+||+||+|+|+|.+|++
T Consensus       311 rvlai------niLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~  384 (866)
T KOG1062|consen  311 RVLAI------NILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVR  384 (866)
T ss_pred             HHHHH------HHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHH
Confidence            44455      999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc---CCcccc
Q psy16364        235 EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ---NNYQYI  272 (276)
Q Consensus       235 ~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~---~~y~~~  272 (276)
                      .+|+||+.||.+++ ++||.+++.+|+.++|+   ++-|+|
T Consensus       385 ~mv~eLl~fL~~~d-~~~k~~~as~I~~laEkfaP~k~W~i  424 (866)
T KOG1062|consen  385 VMVKELLEFLESSD-EDFKADIASKIAELAEKFAPDKRWHI  424 (866)
T ss_pred             HHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHhcCCcchhHH
Confidence            99999999999997 59999999999999999   466665

>KOG1059|consensus

Probab=100.00  E-value=7.5e-35  Score=272.86  Aligned_cols=218  Identities=54%  Similarity=0.827  Sum_probs=183.1

Q ss_pred             CccccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhh
Q psy16364          1 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ   80 (276)
Q Consensus         1 l~~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~   80 (276)
                      |.+|.+.||++|+.|.+.|++||+|.|+|||.+||+|+++|++++|+.+||+.||+++..++++.||.+++.+|+.+|+.
T Consensus       323 m~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~  402 (877)
T KOG1059|consen  323 MSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQ  402 (877)
T ss_pred             HHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCc-hhhhhhHHhh
Q psy16364         81 NNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSS-RMAEMMFDEY  159 (276)
Q Consensus        81 ~~y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~L~~~~  159 (276)
                      ++|.|++||+||..+++++.++.|..+|..|.+|++++..|+|++|++++..++.++.++-...+.+.+ .++++|++||
T Consensus       403 snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~Aaa  482 (877)
T KOG1059|consen  403 SNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAA  482 (877)
T ss_pred             hhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999877322333333 4789999999


Q ss_pred             hccccchhhhccccCCCchHHHH------------------HHHHHHHHhhh----C-c--------cchHHHHHHHHHH
Q psy16364        160 SDRSSKIFNIKFSSRMPNHMKYL------------------GLLAMSKILKT----H-P--------KSVQSHRDLIMQC  208 (276)
Q Consensus       160 ~~~~~~~ilGef~~~~~~n~ryl------------------~L~~l~~l~~~----~-~--------~~~~~~~~~i~~~  208 (276)
                            ||+|||....+++...+                  -+.++.|+...    . +        .++......+-++
T Consensus       483 ------Wi~GEyse~ven~~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf  556 (877)
T KOG1059|consen  483 ------WILGEYSEFVENPNDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQF  556 (877)
T ss_pred             ------HHHHHHHHHhhCHHHHHHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcc
Confidence                  99999998877753332                  23334443221    1 1        1122233444445


Q ss_pred             hcCCCHHHHHHHHHHH
Q psy16364        209 LDDKDESIRLRALDLL  224 (276)
Q Consensus       209 l~~~D~~iq~ralell  224 (276)
                      ..+.|.++|.||-+.+
T Consensus       557 ~~s~d~EvQERA~~~~  572 (877)
T KOG1059|consen  557 SGSSDLEVQERASEVL  572 (877)
T ss_pred             cCccchhHHHHHHHHH
Confidence            5689999999966655

>KOG1077|consensus

Probab=99.98  E-value=1.3e-31  Score=250.45  Aligned_cols=219  Identities=22%  Similarity=0.397  Sum_probs=195.3

Q ss_pred             hhHHHhHHHHHhhhc-CCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCC
Q psy16364         10 KSVQSHRDLIMQCLD-DKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITN   88 (276)
Q Consensus        10 ~~v~~~~~~I~~~L~-d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~   88 (276)
                      ++|..|++.|+..|+ ++|.|||++|++|+++||+.+|++.||.+|++||..++. ..|+|++.|+..+++    +|++|
T Consensus       364 davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL~tAd~-sireeivlKvAILaE----KyAtD  438 (938)
T KOG1077|consen  364 DAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETADY-SIREEIVLKVAILAE----KYATD  438 (938)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHH----HhcCC
Confidence            578899999999999 999999999999999999999999999999999999987 899999999999999    99999


Q ss_pred             hhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhh
Q psy16364         89 FEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFN  168 (276)
Q Consensus        89 ~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~il  168 (276)
                      ..||++++++|++.+|+++++++|.++++++.+.+++|.+|.+++++.++.+.         .++.+..     .|++++
T Consensus       439 y~WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a---------~hE~mVK-----vggyiL  504 (938)
T KOG1077|consen  439 YSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPA---------CHENMVK-----VGGYIL  504 (938)
T ss_pred             cchhHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhH---------HHHHHHH-----hhhhhh
Confidence            99999999999999999999999999999999999999999999999998754         3554433     346999


Q ss_pred             hccccCCCc----------------------hHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHH--
Q psy16364        169 IKFSSRMPN----------------------HMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLL--  224 (276)
Q Consensus       169 Gef~~~~~~----------------------n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell--  224 (276)
                      |||++....                      ..|-+-|++++|++...|+.....++.+-...+..|+++||||.||+  
T Consensus       505 GEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~PEi~~~v~~vFq~~~n~~D~ElQqRa~EYLql  584 (938)
T KOG1077|consen  505 GEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFPEIKSNVQKVFQLYSNLIDVELQQRAVEYLQL  584 (938)
T ss_pred             hhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHHHhhcccCCHHHHHHHHHHHHH
Confidence            999976432                      36778899999999999999999999888899999999999999998  


Q ss_pred             HhcCCcchHHHHHHHHHHHhhhc
Q psy16364        225 YGMVSKKTLMEIVKKLMVHMDKA  247 (276)
Q Consensus       225 ~~l~~~~n~~~iv~~l~~~l~~~  247 (276)
                      ..+.+.+-++.+.+++.+|.+..
T Consensus       585 ~k~as~dvL~~vleeMPpF~er~  607 (938)
T KOG1077|consen  585 SKLASTDVLQTVLEEMPPFPERE  607 (938)
T ss_pred             HHhccchHHHHHHhhCCCCcccc
Confidence            44555677788888887776554

>KOG1077|consensus

Probab=99.97  E-value=9.9e-32  Score=251.34  Aligned_cols=244  Identities=23%  Similarity=0.363  Sum_probs=193.7

Q ss_pred             CccccccChhhHH--HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC--CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Q psy16364          1 MSKILKTHPKSVQ--SHRDLIMQCLDDKDESIRLRALDLLYGMVSK--KTLMEIVKKLMVHMDKAEGTMYRDELLSKVID   76 (276)
Q Consensus         1 l~~i~~~~P~~v~--~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~--~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~   76 (276)
                      +.|++|+.||++.  +|.++|+.+|+|.|.+|..+|..|+..++.+  +.++.-++.-+..|..             |+.
T Consensus       172 lL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~r-------------iv~  238 (938)
T KOG1077|consen  172 LLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSR-------------IVV  238 (938)
T ss_pred             HHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHH-------------HHh
Confidence            3588999999985  8999999999999999999999999999964  3455555544444321             221


Q ss_pred             H--hhhcCC-ccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh----------hhhHHHHHHHHHHhhcCCCCC
Q psy16364         77 I--CSQNNY-QYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRV----------SAVRAFAVAQMSSLLASPSPP  143 (276)
Q Consensus        77 ~--~~~~~y-~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~----------~~~~~~~~~~~~~ll~~~~~~  143 (276)
                      .  .+..+| +|..|+||++.++++++...+..-+.....++.+++.+.          ..++ +.+.+.+.+|+.++++
T Consensus       239 ~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq-~~na~naVLFeaI~l~  317 (938)
T KOG1077|consen  239 VVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQ-HSNAKNAVLFEAISLA  317 (938)
T ss_pred             hcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchH-hhhhHHHHHHHHHHHH
Confidence            1  111345 445589999999999999865433333333333333321          1232 3455668888888877


Q ss_pred             CCCCCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCc--cchHHHHHHHHHHhc-CCCHHHHHHH
Q psy16364        144 LSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHP--KSVQSHRDLIMQCLD-DKDESIRLRA  220 (276)
Q Consensus       144 ~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~--~~~~~~~~~i~~~l~-~~D~~iq~ra  220 (276)
                      +..++  -++.+..|+      ..+|.|+.+++.|+||++|..+.+|+...+  +.+..|+++|+..|+ ++|+||||||
T Consensus       318 ~h~D~--e~~ll~~~~------~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrra  389 (938)
T KOG1077|consen  318 IHLDS--EPELLSRAV------NQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRA  389 (938)
T ss_pred             HHcCC--cHHHHHHHH------HHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHH
Confidence            66554  368888898      999999999999999999999999998865  578899999999999 9999999999


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364        221 LDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQN  267 (276)
Q Consensus       221 lell~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~  267 (276)
                      +||||+||+.+|++.||.+|++||+.+|. .+|+|++.|++.++||.
T Consensus       390 vDLLY~mcD~~Nak~IV~elLqYL~tAd~-sireeivlKvAILaEKy  435 (938)
T KOG1077|consen  390 VDLLYAMCDVSNAKQIVAELLQYLETADY-SIREEIVLKVAILAEKY  435 (938)
T ss_pred             HHHHHHHhchhhHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999996 99999999999999994

>KOG1062|consensus

Probab=99.97  E-value=4.4e-30  Score=243.63  Aligned_cols=228  Identities=19%  Similarity=0.338  Sum_probs=192.3

Q ss_pred             CccccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhh
Q psy16364          1 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ   80 (276)
Q Consensus         1 l~~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~   80 (276)
                      |.|.++..|.++++|+..|++||+|+|.+|++||++|+++|+|.+|++.+|++|+.||..+++ +||.+++.+|+.+++ 
T Consensus       337 L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~-~~k~~~as~I~~laE-  414 (866)
T KOG1062|consen  337 LLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDE-DFKADIASKIAELAE-  414 (866)
T ss_pred             HHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH-
Confidence            457899999999999999999999999999999999999999999999999999999999955 999999999999999 


Q ss_pred             cCCccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh-hhhHHHHHHHHHHhhcCCCCC-CCCCCchhhhhhHHh
Q psy16364         81 NNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRV-SAVRAFAVAQMSSLLASPSPP-LSQPSSRMAEMMFDE  158 (276)
Q Consensus        81 ~~y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~-~~~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~~L~~~  158 (276)
                         +|+|+..|+++++++.+..+|+.+..+++..+..++.+. +..+.+++.++...+...... +.     ...+++.+
T Consensus       415 ---kfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is-----~e~l~qVa  486 (866)
T KOG1062|consen  415 ---KFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDIS-----QEPLLQVA  486 (866)
T ss_pred             ---hcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhh-----hhhHHHHH
Confidence               999999999999999999999999999999999999988 778888888776555332111 11     23455666


Q ss_pred             hhccccchhhhccccCCCc------------------------------hHHHHHHHHHHHHhhhCccchHHHHHHHHHH
Q psy16364        159 YSDRSSKIFNIKFSSRMPN------------------------------HMKYLGLLAMSKILKTHPKSVQSHRDLIMQC  208 (276)
Q Consensus       159 ~~~~~~~~ilGef~~~~~~------------------------------n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~  208 (276)
                      +      |++|||++..-+                              -+|-.+|.|++||..+.+...++.++.|..+
T Consensus       487 ~------W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~~ri~~lI~~~  560 (866)
T KOG1062|consen  487 S------WCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSSSERIKQLISSY  560 (866)
T ss_pred             H------HHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccHHHHHHHHHHh
Confidence            6      999999944322                              1355679999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh
Q psy16364        209 LDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHM  244 (276)
Q Consensus       209 l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l  244 (276)
                      ..+.|.++||||.||-..+....+++..+-+.++-+
T Consensus       561 ~~s~~~elQQRa~E~~~l~~~~~~lr~siLe~mp~~  596 (866)
T KOG1062|consen  561 KSSLDTELQQRAVEYNALFAKDKHLRKSILERMPSC  596 (866)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHhcccCccc
Confidence            999999999999999844445566555554444443

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.87  E-value=1.1e-21  Score=188.05  Aligned_cols=204  Identities=23%  Similarity=0.388  Sum_probs=172.2

Q ss_pred             cccccChhhHHHhHHHHHhhhc-CCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhc
Q psy16364          3 KILKTHPKSVQSHRDLIMQCLD-DKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQN   81 (276)
Q Consensus         3 ~i~~~~P~~v~~~~~~I~~~L~-d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~   81 (276)
                      ++.+.+|..+. +...+..++. |+|.+||++++++++.+++++|+..++++|.+++....+.+++.+++.+|..+|.  
T Consensus       293 ~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~--  369 (526)
T PF01602_consen  293 QLAQSNPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAE--  369 (526)
T ss_dssp             HHCCHCHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHH--
T ss_pred             Hhhcccchhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHh--
Confidence            45677777777 6666667777 9999999999999999999999999999999999665444899999999999999  


Q ss_pred             CCccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhc
Q psy16364         82 NYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSD  161 (276)
Q Consensus        82 ~y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~  161 (276)
                        +|++++.|+++++++++...|..+..+++..+.+++.+.|+.+.+++..+...++...         .++++..++  
T Consensus       370 --~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~---------~~~~~~~~~--  436 (526)
T PF01602_consen  370 --KFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDIS---------SPEALAAAI--  436 (526)
T ss_dssp             --HHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSS---------SHHHHHHHH--
T ss_pred             --ccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhh---------HHHHHHHHH--
Confidence              8899999999999999999888889999999999999999999999999999998742         256778788  


Q ss_pred             cccchhhhccccCCCc--h------------------HHHHHHHHHHHHhhhCc--cchHHHHHHHHHHhc--CCCHHHH
Q psy16364        162 RSSKIFNIKFSSRMPN--H------------------MKYLGLLAMSKILKTHP--KSVQSHRDLIMQCLD--DKDESIR  217 (276)
Q Consensus       162 ~~~~~ilGef~~~~~~--n------------------~ryl~L~~l~~l~~~~~--~~~~~~~~~i~~~l~--~~D~~iq  217 (276)
                          |++|||++..++  .                  .|...++++.|+...+|  +..+...+.+..+..  |.|.++|
T Consensus       437 ----wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr  512 (526)
T PF01602_consen  437 ----WILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVR  512 (526)
T ss_dssp             ----HHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHH
T ss_pred             ----hhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHH
Confidence                999999987665  1                  34456899999999988  445678888888888  9999999


Q ss_pred             HHHHHHHHhc
Q psy16364        218 LRALDLLYGM  227 (276)
Q Consensus       218 ~ralell~~l  227 (276)
                      +||.||+ .+
T Consensus       513 ~Ra~~y~-~l  521 (526)
T PF01602_consen  513 DRAREYL-RL  521 (526)
T ss_dssp             HHHHHHH-HH
T ss_pred             HHHHHHH-HH
Confidence            9999999 44

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.79  E-value=3.1e-18  Score=164.19  Aligned_cols=163  Identities=23%  Similarity=0.337  Sum_probs=122.1

Q ss_pred             CCChhhHHHHHHHHHHhcCCcchH-----HHHHHHHHHHH-HhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhh
Q psy16364         86 ITNFEWYMTVLVELTRMEGTRHGA-----LVAAQMMDVAI-RVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEY  159 (276)
Q Consensus        86 ~~~~~W~v~~ll~ll~~~~~~~~~-----~i~~~l~~vi~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~  159 (276)
                      ..+.||.+..+++++.........     .+.+.+...+. ..+++.-.+++.+..+...            .+.+..++
T Consensus       202 ~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~------------~~~~~~~~  269 (526)
T PF01602_consen  202 SDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS------------PELLQKAI  269 (526)
T ss_dssp             TCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS------------HHHHHHHH
T ss_pred             cccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc------------hHHHHhhH
Confidence            357899999999999875543211     23344444433 2344554455444433221            34566677


Q ss_pred             hccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCCcchHHHHHH
Q psy16364        160 SDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLD-DKDESIRLRALDLLYGMVSKKTLMEIVK  238 (276)
Q Consensus       160 ~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~-~~D~~iq~ralell~~l~~~~n~~~iv~  238 (276)
                            ..+++|+.+.++|+||++|.++..++..++..+. +...++.++. +.|.+||++|+++++.+++++|++.|++
T Consensus       270 ------~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~  342 (526)
T PF01602_consen  270 ------NPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILD  342 (526)
T ss_dssp             ------HHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             ------HHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHH
Confidence                  8999999999999999999999999999966666 6666677777 9999999999999999999999999999


Q ss_pred             HHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364        239 KLMVHMDKAEGTMYRDELLSKVIDICSQN  267 (276)
Q Consensus       239 ~l~~~l~~~~~~~~~~~l~~~i~~~~~~~  267 (276)
                      +|++|+....+++||++++.+|..+|++.
T Consensus       343 eL~~~l~~~~d~~~~~~~i~~I~~la~~~  371 (526)
T PF01602_consen  343 ELLKYLSELSDPDFRRELIKAIGDLAEKF  371 (526)
T ss_dssp             HHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence            99999955433589999999999999884

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PTZ00429 beta-adaptin; Provisional

Probab=99.66  E-value=5.6e-15  Score=145.52  Aligned_cols=241  Identities=14%  Similarity=0.178  Sum_probs=168.9

Q ss_pred             cccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcC
Q psy16364          3 KILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNN   82 (276)
Q Consensus         3 ~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~   82 (276)
                      .|.+++|++++.|...+.-+.+|++. |+..+|++++.|++++|+..|+++|..|....+. +|+.+.+.+|..++.   
T Consensus       323 ~i~~~~P~lf~~~~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~-ef~r~aIrAIg~lA~---  397 (746)
T PTZ00429        323 ALLVIFPNLLRTNLDSFYVRYSDPPF-VKLEKLRLLLKLVTPSVAPEILKELAEYASGVDM-VFVVEVVRAIASLAI---  397 (746)
T ss_pred             HHHHHCHHHHHHHHHhhhcccCCcHH-HHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHH---
Confidence            35678999999998777766777775 9999999999999999999999999999987665 899999999999998   


Q ss_pred             CccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhcc
Q psy16364         83 YQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDR  162 (276)
Q Consensus        83 y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~  162 (276)
                       +|.....|+++.+++++...+.. ..++...+.+++.+.|+.  +.+..+...+... .+.      -++.....+   
T Consensus       398 -k~~~~a~~cV~~Ll~ll~~~~~~-v~e~i~vik~IlrkyP~~--~il~~L~~~~~~~-~i~------e~~AKaaii---  463 (746)
T PTZ00429        398 -KVDSVAPDCANLLLQIVDRRPEL-LPQVVTAAKDIVRKYPEL--LMLDTLVTDYGAD-EVV------EEEAKVSLL---  463 (746)
T ss_pred             -hChHHHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHCccH--HHHHHHHHhhccc-ccc------cHHHHHHHH---
Confidence             88889999999999999765443 346667788888887763  2333333322111 111      134444445   


Q ss_pred             ccchhhhccccCCCc-----------------hHHHHHHHHHHHHhhhCccchHHHHHHHHH-Hhc-CCCHHHHHHHHHH
Q psy16364        163 SSKIFNIKFSSRMPN-----------------HMKYLGLLAMSKILKTHPKSVQSHRDLIMQ-CLD-DKDESIRLRALDL  223 (276)
Q Consensus       163 ~~~~ilGef~~~~~~-----------------n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~-~l~-~~D~~iq~ralel  223 (276)
                         |++|||++..++                 ..|+-.|++..|+....|.-.+.....++. |.+ +.|.++|.||..|
T Consensus       464 ---WILGEy~~~I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y  540 (746)
T PTZ00429        464 ---WMLGEYCDFIENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTTHSDDPDVRDRAFAY  540 (746)
T ss_pred             ---HHHHhhHhhHhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Confidence               999999876543                 245566888888888888644554445554 444 6888999999999


Q ss_pred             HHhcCCcch----HHHHHHHHHHHhhh---cCCchHHHHHHHHHHHHhcc
Q psy16364        224 LYGMVSKKT----LMEIVKKLMVHMDK---AEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       224 l~~l~~~~n----~~~iv~~l~~~l~~---~~~~~~~~~l~~~i~~~~~~  266 (276)
                      . ++.+.+.    .+.||-.=.+-+..   ..++...+++...|..++..
T Consensus       541 ~-rLLs~~~~~~~a~~iv~~~~~~i~~~~~~~d~~~l~~L~~~~~tlssv  589 (746)
T PTZ00429        541 W-RLLSKGITVAQMKKVVHGQMVPVNVDSTFSDAMTMADLKKSLNTAAIV  589 (746)
T ss_pred             H-HHHcCCCcHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHhcCceeee
Confidence            8 5554432    34444211111111   12235777787777777654

>PTZ00429 beta-adaptin; Provisional

Probab=99.57  E-value=1.7e-13  Score=135.14  Aligned_cols=94  Identities=18%  Similarity=0.249  Sum_probs=84.0

Q ss_pred             cccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCCc
Q psy16364        171 FSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGT  250 (276)
Q Consensus       171 f~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~~  250 (276)
                      ++.+.+++++|++|..+..+++.+|.....|...++-+.+|++- |+.+++|+++.|++++|+..|++||..|....+. 
T Consensus       305 ~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~-  382 (746)
T PTZ00429        305 TLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPF-VKLEKLRLLLKLVTPSVAPEILKELAEYASGVDM-  382 (746)
T ss_pred             HhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHH-HHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCH-
Confidence            34566789999999999999999999999988777766667764 9999999999999999999999999999988774 


Q ss_pred             hHHHHHHHHHHHHhcc
Q psy16364        251 MYRDELLSKVIDICSQ  266 (276)
Q Consensus       251 ~~~~~l~~~i~~~~~~  266 (276)
                      +|+++.+.+|..+|.+
T Consensus       383 ef~r~aIrAIg~lA~k  398 (746)
T PTZ00429        383 VFVVEVVRAIASLAIK  398 (746)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999999987

>KOG1058|consensus

Probab=99.50  E-value=1.1e-12  Score=125.09  Aligned_cols=243  Identities=16%  Similarity=0.226  Sum_probs=173.6

Q ss_pred             cChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC-CcHHHHHHHHHHhh--hhcCCchhHHHHHHHHHHHhhhcCC
Q psy16364          7 THPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK-KTLMEIVKKLMVHM--DKAEGTMYRDELLSKVIDICSQNNY   83 (276)
Q Consensus         7 ~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~-~n~~~iv~~L~~~L--~~~~~~~~r~~li~~I~~~~~~~~y   83 (276)
                      +.|++++...+.|..||++++..||+-|+--++.+-.. +..-.=+|+|+..+  ...|+ .-++....-++        
T Consensus       127 kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~Dp-sCkRNAFi~L~--------  197 (948)
T KOG1058|consen  127 KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDP-SCKRNAFLMLF--------  197 (948)
T ss_pred             CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCc-hhHHHHHHHHH--------
Confidence            78999999999999999999999999999999988754 22222235555443  22344 22222111111        


Q ss_pred             ccCCChh----hHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCC-------Cchhh
Q psy16364         84 QYITNFE----WYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQP-------SSRMA  152 (276)
Q Consensus        84 ~~~~~~~----W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~-------~~~~~  152 (276)
                        ..|.+    |+...+.++= ..|+...--+.+.++++..+.|+.+..-++.+..+|...+.....+       -|+.+
T Consensus       198 --~~D~ErAl~Yl~~~idqi~-~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p  274 (948)
T KOG1058|consen  198 --TTDPERALNYLLSNIDQIP-SFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDP  274 (948)
T ss_pred             --hcCHHHHHHHHHhhHhhcc-CccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCH
Confidence              22322    4433333321 1123333456788888888889888777888887775543322111       12346


Q ss_pred             hhhHHhhhccccchhhhcc-ccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc
Q psy16364        153 EMMFDEYSDRSSKIFNIKF-SSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK  231 (276)
Q Consensus       153 ~~L~~~~~~~~~~~ilGef-~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~  231 (276)
                      +.+++++      ..+-+. ....+||.+.+-|+.+..+...+.+..++....++..|.++|.++|++|+++.+.+++..
T Consensus       275 ~alk~Aa------~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr  348 (948)
T KOG1058|consen  275 TALKAAA------STYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR  348 (948)
T ss_pred             HHHHHHH------HHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc
Confidence            6777776      444443 356789999999999999998888888999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhc------CCchHHHHHHHHHHHHhccC
Q psy16364        232 TLMEIVKKLMVHMDKA------EGTMYRDELLSKVIDICSQN  267 (276)
Q Consensus       232 n~~~iv~~l~~~l~~~------~~~~~~~~l~~~i~~~~~~~  267 (276)
                      |+++||..|-+.+.++      +...||+.|+.+|+.++-+.
T Consensus       349 Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~F  390 (948)
T KOG1058|consen  349 NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKF  390 (948)
T ss_pred             cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcC
Confidence            9999999999999764      23589999999999998763

>KOG1058|consensus

Probab=99.41  E-value=6.9e-12  Score=119.74  Aligned_cols=152  Identities=14%  Similarity=0.193  Sum_probs=129.2

Q ss_pred             cChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcC------CchhHHHHHHHHHHHhhh
Q psy16364          7 THPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAE------GTMYRDELLSKVIDICSQ   80 (276)
Q Consensus         7 ~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~------~~~~r~~li~~I~~~~~~   80 (276)
                      .|-.++++....+++.|+.+|..||++++++.+++++..|+.++|..|.+++.++.      ...||..++.+|+..+. 
T Consensus       310 ~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav-  388 (948)
T KOG1058|consen  310 LHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAV-  388 (948)
T ss_pred             hhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhh-
Confidence            34567889999999999999999999999999999999999999999999986652      34799999999997776 


Q ss_pred             cCCccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhh
Q psy16364         81 NNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYS  160 (276)
Q Consensus        81 ~~y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~  160 (276)
                         +|+.-+.-.+..+++.+.-........+...+.+++.+.|++|..+++++..-+..++.         .++.+.++ 
T Consensus       389 ---~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~irS---------~ki~rgal-  455 (948)
T KOG1058|consen  389 ---KFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIRS---------SKICRGAL-  455 (948)
T ss_pred             ---cChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhcc---------cccchhHH-
Confidence               78877777888888888776655567888999999999999999999998888876652         45677777 


Q ss_pred             ccccchhhhccccCCCc
Q psy16364        161 DRSSKIFNIKFSSRMPN  177 (276)
Q Consensus       161 ~~~~~~ilGef~~~~~~  177 (276)
                           ||+|||+...+.
T Consensus       456 -----wi~GeYce~~~~  467 (948)
T KOG1058|consen  456 -----WILGEYCEGLSE  467 (948)
T ss_pred             -----HHHHHHHhhhHH
Confidence                 999999988763

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=99.06  E-value=2.5e-09  Score=100.13  Aligned_cols=213  Identities=14%  Similarity=0.159  Sum_probs=158.4

Q ss_pred             cccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcC
Q psy16364          3 KILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNN   82 (276)
Q Consensus         3 ~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~   82 (276)
                      ++..++|+.+.-.-..+-.+.+|.+-+|..-|+.-+..--+.+++..+++.+..+...-.+ +|+.-++..+.++|-   
T Consensus       329 ~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD-~FKiI~ida~rsLsl---  404 (898)
T COG5240         329 QLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSD-GFKIIAIDALRSLSL---  404 (898)
T ss_pred             HHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhcc-CceEEeHHHHHHHHh---
Confidence            4556677776666666667777888888888877777777777888887777777766555 788888888888887   


Q ss_pred             CccCCChhhHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhc
Q psy16364         83 YQYITNFEWYMTVLVELTRMEGTR-HGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSD  161 (276)
Q Consensus        83 y~~~~~~~W~v~~ll~ll~~~~~~-~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~  161 (276)
                       .|+..-.-|.+.+.+.+...|.. ...-+.+.+.+++...|+.++.+.+.++..+++.+         .+++.....  
T Consensus       405 -~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDce---------y~~I~vrIL--  472 (898)
T COG5240         405 -LFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCE---------YHQITVRIL--  472 (898)
T ss_pred             -hCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcc---------hhHHHHHHH--
Confidence             66544333566666666665543 34557788999999999999999999999998765         367877777  


Q ss_pred             cccchhhhccccCCCchHHHH-----------------HHHHHHHHhhh-CccchHHH-HHHHHHHhcCCCHHHHHHHHH
Q psy16364        162 RSSKIFNIKFSSRMPNHMKYL-----------------GLLAMSKILKT-HPKSVQSH-RDLIMQCLDDKDESIRLRALD  222 (276)
Q Consensus       162 ~~~~~ilGef~~~~~~n~ryl-----------------~L~~l~~l~~~-~~~~~~~~-~~~i~~~l~~~D~~iq~rale  222 (276)
                          .|+|+=+....+|.||+                 ++.||.|++-. +....++- ...+-.||+|.|.++|.||.=
T Consensus       473 ----~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf  548 (898)
T COG5240         473 ----GILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASF  548 (898)
T ss_pred             ----HHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHH
Confidence                89999888888887775                 45777777643 23344554 555566999999999999999


Q ss_pred             HHHhcCCcchHHH
Q psy16364        223 LLYGMVSKKTLME  235 (276)
Q Consensus       223 ll~~l~~~~n~~~  235 (276)
                      ++-.|-+++.+.+
T Consensus       549 ~l~~~~~~da~~p  561 (898)
T COG5240         549 LLRNMRLSDACEP  561 (898)
T ss_pred             HHHhhhhhhhhhc
Confidence            9978877777666

>KOG1078|consensus

Probab=98.79  E-value=9.9e-08  Score=92.21  Aligned_cols=211  Identities=17%  Similarity=0.250  Sum_probs=160.1

Q ss_pred             ccccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhc
Q psy16364          2 SKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQN   81 (276)
Q Consensus         2 ~~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~   81 (276)
                      +++..++|+++.---..+-.+..|.+-+|..-|+..++.-.+.+|+..+++....+...-.+ +|+.-++.+|..+|.  
T Consensus       307 nkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disD-eFKivvvdai~sLc~--  383 (865)
T KOG1078|consen  307 NKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISD-EFKIVVVDAIRSLCL--  383 (865)
T ss_pred             HHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc-cceEEeHHHHHHHHh--
Confidence            45667788888777777778888999999999999999888888888888887777776666 888889999999998  


Q ss_pred             CCccCCChhhHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhh
Q psy16364         82 NYQYITNFEWYMTVLVELTRMEGTR-HGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYS  160 (276)
Q Consensus        82 ~y~~~~~~~W~v~~ll~ll~~~~~~-~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~  160 (276)
                        +|+.--.-+.+-+-++++..|.. ....+.+.+++++..+|+.+..+..-++..+++...         ..+.-... 
T Consensus       384 --~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~---------~~i~~rIL-  451 (865)
T KOG1078|consen  384 --KFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEF---------TQIAVRIL-  451 (865)
T ss_pred             --hccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccc---------hHHHHHHH-
Confidence              66644333556666667666543 345677888888888888888888888888877542         33333333 


Q ss_pred             ccccchhhhccccCCCchHHHH-----------------HHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy16364        161 DRSSKIFNIKFSSRMPNHMKYL-----------------GLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDL  223 (276)
Q Consensus       161 ~~~~~~ilGef~~~~~~n~ryl-----------------~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralel  223 (276)
                           .++|+=+-...++.+|+                 +..++.|+..-++...+.....+..|+.|.|.++|-||.-+
T Consensus       452 -----hlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~  526 (865)
T KOG1078|consen  452 -----HLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFY  526 (865)
T ss_pred             -----HHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHH
Confidence                 67777666555555543                 56888898877788888888889999999999999999999


Q ss_pred             HHhcCCcch
Q psy16364        224 LYGMVSKKT  232 (276)
Q Consensus       224 l~~l~~~~n  232 (276)
                      +..+.++++
T Consensus       527 l~~l~~~~~  535 (865)
T KOG1078|consen  527 LKNLEEKDD  535 (865)
T ss_pred             HHHhhhhhh
Confidence            966664444

>KOG1061|consensus

Probab=98.54  E-value=1.3e-06  Score=84.64  Aligned_cols=240  Identities=15%  Similarity=0.176  Sum_probs=158.9

Q ss_pred             ccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCC
Q psy16364          4 ILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNY   83 (276)
Q Consensus         4 i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y   83 (276)
                      ++.+.|+....++..+. |=-++-..|...-++.+.++++..|+..++.+|..|-...+. +|-++.+..|-.++.    
T Consensus       306 il~~~p~~~~~~~~~Ff-~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~-~fvrkaIraig~~ai----  379 (734)
T KOG1061|consen  306 ILQKRPEILKVEIKVFF-CKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDV-DFVRKAVRAIGRLAI----  379 (734)
T ss_pred             HHHhChHHHHhHhHeee-eecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCH-HHHHHHHHHhhhhhh----
Confidence            46677885555554443 444556889999999999999999999999999998776665 677777877777765    


Q ss_pred             ccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccc
Q psy16364         84 QYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRS  163 (276)
Q Consensus        84 ~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~  163 (276)
                      ++... .-.+..++++++..-+++..++.--+++++.++|+.-...+..+..-++.   +.+      ++.=.+.+    
T Consensus       380 k~e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~s---l~e------peak~ami----  445 (734)
T KOG1061|consen  380 KAEQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDS---LQE------PEAKAALI----  445 (734)
T ss_pred             hhhhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccc---cCC------hHHHHHHH----
Confidence            33221 33889999999987778888899999999999988654444333333222   222      33333344    


Q ss_pred             cchhhhccccCCCchHHHH--------------H---HHHHHHHhhhCccchHHH-HHHHHHHhcC-CCHHHHHHHHHHH
Q psy16364        164 SKIFNIKFSSRMPNHMKYL--------------G---LLAMSKILKTHPKSVQSH-RDLIMQCLDD-KDESIRLRALDLL  224 (276)
Q Consensus       164 ~~~ilGef~~~~~~n~ryl--------------~---L~~l~~l~~~~~~~~~~~-~~~i~~~l~~-~D~~iq~ralell  224 (276)
                        |++|||.+..++-..++              +   |.+-+|+.-..|..-++- +.++-.|.+| .++++|-|++.|-
T Consensus       446 --Wilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~  523 (734)
T KOG1061|consen  446 --WILGEYAERIENALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQELLQGVLPLATADTDNPDLRDRGLIYW  523 (734)
T ss_pred             --HHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhhhccccChhhhhhHHHHH
Confidence              99999999988865554              2   345555555556555554 4444447766 5569999999996


Q ss_pred             HhcC--CcchHHHHHHHHHHHhh---hcCCchHHHHHHHHHHHHhcc
Q psy16364        225 YGMV--SKKTLMEIVKKLMVHMD---KAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       225 ~~l~--~~~n~~~iv~~l~~~l~---~~~~~~~~~~l~~~i~~~~~~  266 (276)
                       ++.  ++.-++.++..=.+-+.   ..-++...+++...|..+++.
T Consensus       524 -RlLs~~~~~a~~v~~~~kP~is~~~~~~~p~~le~l~~~i~tlssV  569 (734)
T KOG1061|consen  524 -RLLSEDPLIAKDVVLAEKPLISEETDSLDPTLLEELLCDIGTLSSV  569 (734)
T ss_pred             -HHhhcCHHHHHHHHhcCCCccccCCCCCCchHHHHHHHhhccccce
Confidence             443  34444444433221111   111357888888887777654

>KOG1060|consensus

Probab=97.73  E-value=0.0014  Score=64.40  Aligned_cols=249  Identities=14%  Similarity=0.119  Sum_probs=147.4

Q ss_pred             cccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCc
Q psy16364          5 LKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQ   84 (276)
Q Consensus         5 ~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~   84 (276)
                      ..+.|.+...|...+.=+=.|++ -+..--|++|..+++..|+..|.++|.-|.+.++. .|-..-+..|..++.    .
T Consensus       349 s~~~~~lF~P~lKsFfv~ssDp~-~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~-~faa~aV~AiGrCA~----~  422 (968)
T KOG1060|consen  349 SIKRPTLFEPHLKSFFVRSSDPT-QVKILKLEILSNLANESNISEILRELQTYIKSSDR-SFAAAAVKAIGRCAS----R  422 (968)
T ss_pred             HhcchhhhhhhhhceEeecCCHH-HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHH----h
Confidence            34566666666666544444433 35666799999999999999999999999988775 566666777776665    3


Q ss_pred             cCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhcccc
Q psy16364         85 YITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSS  164 (276)
Q Consensus        85 ~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~  164 (276)
                      ...-.+-..+-|+++++--...+-.+...-+..++.+.|..+.+....++.+++.+..          +.-+++     -
T Consensus       423 ~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~v----------p~ARA~-----I  487 (968)
T KOG1060|consen  423 IGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTILV----------PAARAG-----I  487 (968)
T ss_pred             hCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhhh----------hhhhce-----e
Confidence            3322333344555555543222333444556666777788777788899999876532          222333     3


Q ss_pred             chhhhccccCCCc----h--------------HHHHHHHHHHHHhhhCccchHHHHHHHHHHhc-CCCHHHHHHHHHHHH
Q psy16364        165 KIFNIKFSSRMPN----H--------------MKYLGLLAMSKILKTHPKSVQSHRDLIMQCLD-DKDESIRLRALDLLY  225 (276)
Q Consensus       165 ~~ilGef~~~~~~----n--------------~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~-~~D~~iq~ralell~  225 (276)
                      +|.+|||++...-    -              .|+-.|..-.|+.-.+..-....++.+++.-+ |+.=.+|.||-=+=.
T Consensus       488 iWLige~~e~vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~~kll~~Yv~~L~~yD~sYDiRDRaRF~r~  567 (968)
T KOG1060|consen  488 IWLIGEYCEIVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQTKLLVQYVFELARYDLSYDIRDRARFLRQ  567 (968)
T ss_pred             eeeehhhhhhcchhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhhHHHHHHHHHHHhccCCCcchhHHHHHHHH
Confidence            6999999865431    2              33334555556666666656666666665443 677789999876653


Q ss_pred             hcCCcchHHHHHHHHHHHhh-h------cCCchHHHHHHHHHHHHhccCCccccCCC
Q psy16364        226 GMVSKKTLMEIVKKLMVHMD-K------AEGTMYRDELLSKVIDICSQNNYQYITNF  275 (276)
Q Consensus       226 ~l~~~~n~~~iv~~l~~~l~-~------~~~~~~~~~l~~~i~~~~~~~~y~~~~~f  275 (276)
                      -+....++..-..+..=-=. .      ..+++|+-..++.+. -+..-.|+-+++|
T Consensus       568 l~~~~~~Ls~h~~ei~l~~Kpa~~~es~f~~~~~~~gslS~lL-n~~a~GY~~lp~~  623 (968)
T KOG1060|consen  568 LISPLEALSKHAREIFLASKPAPVLESSFKDRHYQLGSLSLLL-NAPAPGYEPLPNW  623 (968)
T ss_pred             HhccHHHHHHHHHHHhhccCCCccCcccccCCCcccchHHHHh-cCcCcCCccCCCc
Confidence            33444433333333210000 0      012245554544433 3445567776665

>KOG1078|consensus

Probab=97.37  E-value=0.01  Score=58.43  Aligned_cols=223  Identities=13%  Similarity=0.160  Sum_probs=144.9

Q ss_pred             ccccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhc
Q psy16364          2 SKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQN   81 (276)
Q Consensus         2 ~~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~   81 (276)
                      +|+++..++.+.+|...+.+..++.+..+.--|+-+++.+..  |.+.-+.+++..+...   .                
T Consensus       160 ~hll~~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk--~drla~sklv~~~~~~---~----------------  218 (865)
T KOG1078|consen  160 YHLLPISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRK--NDRLAVSKLVQKFTRG---S----------------  218 (865)
T ss_pred             hhhhcccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHccc---c----------------
Confidence            467888999999999999999999899999999999998863  4455666666554321   0                


Q ss_pred             CCccCCChhhHHHHHH-HHHHhcCCcchHHHHHHHHHHHH-HhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhh
Q psy16364         82 NYQYITNFEWYMTVLV-ELTRMEGTRHGALVAAQMMDVAI-RVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEY  159 (276)
Q Consensus        82 ~y~~~~~~~W~v~~ll-~ll~~~~~~~~~~i~~~l~~vi~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~  159 (276)
                        .+.+-+.|+..... +++.-. ..........+-+.+. +..-+..++..++..+... .          ...+..++
T Consensus       219 --~~~~~A~~~lir~~~~~l~~~-~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~-~----------~r~l~pav  284 (865)
T KOG1078|consen  219 --LKSPLAVCMLIRIASELLKEN-QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNT-N----------SRELAPAV  284 (865)
T ss_pred             --ccchhHHHHHHHHHHHHhhhc-ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhcccc-C----------HhhcchHH
Confidence              22233445433221 111111 1101111122222222 1222233344433333211 1          22233344


Q ss_pred             hccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q psy16364        160 SDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKK  239 (276)
Q Consensus       160 ~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~  239 (276)
                            ..+--|+++...-+||-+..++.+++..+|..+--.-..+.....|..-+|-.-|.-.+++=-+..|+..+++.
T Consensus       285 ------s~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~q  358 (865)
T KOG1078|consen  285 ------SVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQ  358 (865)
T ss_pred             ------HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHH
Confidence                  67778888888889999999999999999987766555577788888889999999888888899999888888


Q ss_pred             HHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        240 LMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       240 l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      .-.+...-++ +||.-.+..|..+|-+
T Consensus       359 I~~fv~disD-eFKivvvdai~sLc~~  384 (865)
T KOG1078|consen  359 ISSFVSDISD-EFKIVVVDAIRSLCLK  384 (865)
T ss_pred             HHHHHHhccc-cceEEeHHHHHHHHhh
Confidence            8888766555 7777777777777755

>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking

Probab=97.34  E-value=0.049  Score=51.22  Aligned_cols=52  Identities=19%  Similarity=0.245  Sum_probs=44.1

Q ss_pred             ccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHH
Q psy16364          4 ILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLM   55 (276)
Q Consensus         4 i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~   55 (276)
                      ++..++.+...+.+-|+++|-=..++....=++|+=+|+++.++.++...|+
T Consensus       102 ~L~~~~~~~~~~FP~llK~lAWn~~~l~~eFv~LLP~Li~~~Ta~EvlH~LL  153 (459)
T PF14764_consen  102 LLCSNTSIFPQYFPNLLKFLAWNSPSLVSEFVDLLPALISPGTAVEVLHSLL  153 (459)
T ss_pred             HHccccchHhHhchHHHHHHHcCcHHHHHHHHHHhHHHcCCCcHHHHHHHHH
Confidence            4556778888999999999998889999999999999999999888765554

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.16  E-value=0.0081  Score=49.66  Aligned_cols=65  Identities=17%  Similarity=0.262  Sum_probs=49.3

Q ss_pred             ccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcH--HH-HHHHHHHhhhhcCCchhHHH
Q psy16364          4 ILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTL--ME-IVKKLMVHMDKAEGTMYRDE   69 (276)
Q Consensus         4 i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~--~~-iv~~L~~~L~~~~~~~~r~~   69 (276)
                      +..++|.+++.|.+.+..||.|+|+.||+.|+.++..++..+.+  +. ++..++.-+...++ +.|..
T Consensus        15 L~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~-~Ir~~   82 (178)
T PF12717_consen   15 LCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENP-EIRSL   82 (178)
T ss_pred             HHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCH-HHHHH
Confidence            45689999999999999999999999999999999999876442  22 33555555544433 45543

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=96.77  E-value=0.52  Score=45.46  Aligned_cols=249  Identities=14%  Similarity=0.130  Sum_probs=121.2

Q ss_pred             Chhh-HHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcH-------HHHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy16364          8 HPKS-VQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTL-------MEIVKKLMVHMDKAEGTMYRDELLSKVIDICS   79 (276)
Q Consensus         8 ~P~~-v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~-------~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~   79 (276)
                      .|.. ..++.+.+..+|.++++.||.-++.-+..++..+.-       ..+++.++..+...+. +.....+..+..++.
T Consensus        70 ~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~-~Va~~A~~~L~~l~~  148 (503)
T PF10508_consen   70 SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL-SVAKAAIKALKKLAS  148 (503)
T ss_pred             CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH-HHHHHHHHHHHHHhC
Confidence            4443 679999999999999999999999998887764321       3355666666654443 555555555556664


Q ss_pred             hcCCccCCChhhH-----HHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHH--HHHHhhcCCCCCCCC-CCchh
Q psy16364         80 QNNYQYITNFEWY-----MTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVA--QMSSLLASPSPPLSQ-PSSRM  151 (276)
Q Consensus        80 ~~~y~~~~~~~W~-----v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~--~~~~ll~~~~~~~~~-~~~~~  151 (276)
                      ..     .....+     +..+.+++......+.-.+.+-+.++....++.......  -+..++.+... ... -.-+.
T Consensus       149 ~~-----~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlna  222 (503)
T PF10508_consen  149 HP-----EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNA  222 (503)
T ss_pred             Cc-----hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHH
Confidence            21     111222     444555554322222233444455554444444333222  12222222110 000 00011


Q ss_pred             hhhhHHhhhcc-c--------cchhhhcc-ccCCCch-HHHH---HH-HHHHHHhhhCccch----HHHHHHHHHHhcCC
Q psy16364        152 AEMMFDEYSDR-S--------SKIFNIKF-SSRMPNH-MKYL---GL-LAMSKILKTHPKSV----QSHRDLIMQCLDDK  212 (276)
Q Consensus       152 ~~~L~~~~~~~-~--------~~~ilGef-~~~~~~n-~ryl---~L-~~l~~l~~~~~~~~----~~~~~~i~~~l~~~  212 (276)
                      -+++.+.+... +        ..--+-.. .+..+++ .+.+   |. ..+..++...|..+    +.....+.+++++.
T Consensus       223 lell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~  302 (503)
T PF10508_consen  223 LELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQ  302 (503)
T ss_pred             HHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCC
Confidence            22222222100 0        00011111 1112222 1211   11 22334444444322    34455666778899


Q ss_pred             CHHHHHHHHHHHHhcCCcchHHHHH------------HHHHHHhhhcCCchHHHHHHHHHHHHh
Q psy16364        213 DESIRLRALDLLYGMVSKKTLMEIV------------KKLMVHMDKAEGTMYRDELLSKVIDIC  264 (276)
Q Consensus       213 D~~iq~ralell~~l~~~~n~~~iv------------~~l~~~l~~~~~~~~~~~l~~~i~~~~  264 (276)
                      |.+++.-|+|-+-.++....=+..+            +..-.+..... .+.|......+..+.
T Consensus       303 d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~-~~lk~r~l~al~~il  365 (503)
T PF10508_consen  303 DPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS-TELKLRALHALASIL  365 (503)
T ss_pred             ChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHH
Confidence            9999999999885555544333333            22223322222 367777777776663

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PRK09687 putative lyase; Provisional

Probab=96.74  E-value=0.34  Score=43.06  Aligned_cols=25  Identities=24%  Similarity=0.367  Sum_probs=12.7

Q ss_pred             HHHHhhhcCCChhHHhhHHHHHHhh
Q psy16364         17 DLIMQCLDDKDESIRLRALDLLYGM   41 (276)
Q Consensus        17 ~~I~~~L~d~D~sIr~~aL~Ll~~l   41 (276)
                      +.+.+.|.|+|..||..|+..+..+
T Consensus        26 ~~L~~~L~d~d~~vR~~A~~aL~~~   50 (280)
T PRK09687         26 DELFRLLDDHNSLKRISSIRVLQLR   50 (280)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            3344555555555555555554443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=96.68  E-value=0.19  Score=51.94  Aligned_cols=227  Identities=12%  Similarity=0.044  Sum_probs=113.0

Q ss_pred             hHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCC------ccCCC
Q psy16364         15 HRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNY------QYITN   88 (276)
Q Consensus        15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y------~~~~~   88 (276)
                      -.+.+...|+|+|+.||+.|+..|-....+.    .++.|.+-|...+. .+|...+..+..+.+...-      ....+
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~----~~~~L~~aL~D~d~-~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~  696 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETTPPG----FGPALVAALGDGAA-AVRRAAAEGLRELVEVLPPAPALRDHLGSP  696 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhcchh----HHHHHHHHHcCCCH-HHHHHHHHHHHHHHhccCchHHHHHHhcCC
Confidence            3467888999999999999999999876543    45666666654443 7887776666544320000      00112


Q ss_pred             hhhHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HhhhhHHHHHHHHHHhhcCCCCCC--CCCCchhhhhhHHhhh-----
Q psy16364         89 FEWYMTVLVELTRMEGTRHGALVAAQMMDVAI-RVSAVRAFAVAQMSSLLASPSPPL--SQPSSRMAEMMFDEYS-----  160 (276)
Q Consensus        89 ~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~-~~~~~~~~~~~~~~~ll~~~~~~~--~~~~~~~~~~L~~~~~-----  160 (276)
                      .++.....++.|...+... .   ..+...+. ..+.+|..++..+..+ .....+.  -.+.  .+++=..++.     
T Consensus       697 d~~VR~~A~~aL~~~~~~~-~---~~l~~~L~D~d~~VR~~Av~aL~~~-~~~~~l~~~l~D~--~~~VR~~aa~aL~~~  769 (897)
T PRK13800        697 DPVVRAAALDVLRALRAGD-A---ALFAAALGDPDHRVRIEAVRALVSV-DDVESVAGAATDE--NREVRIAVAKGLATL  769 (897)
T ss_pred             CHHHHHHHHHHHHhhccCC-H---HHHHHHhcCCCHHHHHHHHHHHhcc-cCcHHHHHHhcCC--CHHHHHHHHHHHHHh
Confidence            2233333333333221110 0   12222221 2344666666655532 1110000  0000  1222222220     


Q ss_pred             -cc--ccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHH
Q psy16364        161 -DR--SSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIV  237 (276)
Q Consensus       161 -~~--~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv  237 (276)
                       +.  .+.-.+.+++.+.+...|.-++.+|.++..  +   +.....+...|+|+|..+|..|.+-|-.+-+++    .+
T Consensus       770 ~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~--~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~----a~  840 (897)
T PRK13800        770 GAGGAPAGDAVRALTGDPDPLVRAAALAALAELGC--P---PDDVAAATAALRASAWQVRQGAARALAGAAADV----AV  840 (897)
T ss_pred             ccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCC--c---chhHHHHHHHhcCCChHHHHHHHHHHHhccccc----hH
Confidence             00  011234445555555566666666655422  1   112234667888888888888888885554333    33


Q ss_pred             HHHHHHhhhcCCchHHHHHHHHHHHH
Q psy16364        238 KKLMVHMDKAEGTMYRDELLSKVIDI  263 (276)
Q Consensus       238 ~~l~~~l~~~~~~~~~~~l~~~i~~~  263 (276)
                      +-|++-|...+ ...|.+-+..+..+
T Consensus       841 ~~L~~~L~D~~-~~VR~~A~~aL~~~  865 (897)
T PRK13800        841 PALVEALTDPH-LDVRKAAVLALTRW  865 (897)
T ss_pred             HHHHHHhcCCC-HHHHHHHHHHHhcc
Confidence            44444444444 47777777666543

>KOG2023|consensus

Probab=96.64  E-value=0.098  Score=51.04  Aligned_cols=194  Identities=14%  Similarity=0.227  Sum_probs=112.4

Q ss_pred             hhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC---CcHHHHHHHHHHhhhhcCC----chhHHHHHHHHHHH-hhhc
Q psy16364         10 KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK---KTLMEIVKKLMVHMDKAEG----TMYRDELLSKVIDI-CSQN   81 (276)
Q Consensus        10 ~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~---~n~~~iv~~L~~~L~~~~~----~~~r~~li~~I~~~-~~~~   81 (276)
                      +...--+..++++|.|+++-||..+=-++..+++.   .+|.++.|.|..-|...+.    ..|  ..++||++- +..-
T Consensus        86 ~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~--~AL~KIcEDsa~~l  163 (885)
T KOG2023|consen   86 EVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAF--GALQKICEDSAQFL  163 (885)
T ss_pred             HHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhH--HHHHHHHhhhHHHH
Confidence            33445567789999999998887777777788876   5788899999988876542    122  235555522 1110


Q ss_pred             CCcc-CCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhh
Q psy16364         82 NYQY-ITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYS  160 (276)
Q Consensus        82 ~y~~-~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~  160 (276)
                      +-.+ ..|-.-++.+++++++.+                  +|.+|..++.       |++..+...    ++.|+... 
T Consensus       164 ds~~~~rpl~~mipkfl~f~~h~------------------spkiRs~A~~-------cvNq~i~~~----~qal~~~i-  213 (885)
T KOG2023|consen  164 DSDVLTRPLNIMIPKFLQFFKHP------------------SPKIRSHAVG-------CVNQFIIIQ----TQALYVHI-  213 (885)
T ss_pred             hhhcccCchHHhHHHHHHHHhCC------------------ChhHHHHHHh-------hhhheeecC----cHHHHHHH-
Confidence            0011 123333445555544433                  2334544443       222221111    11222111 


Q ss_pred             ccccchhhhcc--ccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHh----cCCCHHHHHHHHHHHHhcCCcchHH
Q psy16364        161 DRSSKIFNIKF--SSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCL----DDKDESIRLRALDLLYGMVSKKTLM  234 (276)
Q Consensus       161 ~~~~~~ilGef--~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l----~~~D~~iq~ralell~~l~~~~n~~  234 (276)
                      |+   ++-+-|  ....+++.|--.-.++.-|....|.-...|..-|++++    +|+|.++---|+|+..+++..+-.+
T Consensus       214 D~---Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~  290 (885)
T KOG2023|consen  214 DK---FLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICK  290 (885)
T ss_pred             HH---HHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcH
Confidence            11   222222  14455677777777888888888876666665555544    7999999999999999998875444


Q ss_pred             HHHH
Q psy16364        235 EIVK  238 (276)
Q Consensus       235 ~iv~  238 (276)
                      .++.
T Consensus       291 ~~L~  294 (885)
T KOG2023|consen  291 EVLQ  294 (885)
T ss_pred             HHHH
Confidence            4443

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=96.53  E-value=0.55  Score=52.01  Aligned_cols=226  Identities=10%  Similarity=0.059  Sum_probs=138.6

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcC-CCcHHH------HHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVS-KKTLME------IVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI   86 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~-~~n~~~------iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~   86 (276)
                      .-++.++++|.++|..++..|.-.+..++. .++.+.      .++.|++.|+..+. ..+...+..+..++..      
T Consensus       488 GaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~-~~q~~Aa~AL~nLi~~------  560 (2102)
T PLN03200        488 GGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGP-KGQEIAAKTLTKLVRT------  560 (2102)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCH-HHHHHHHHHHHHHHhc------
Confidence            458889999999999999999999999985 345444      35678888876654 6777777777766542      


Q ss_pred             CChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh------hh-h-----HHHHHHHHHHhhcCCCCCCCCCCchhhhh
Q psy16364         87 TNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRV------SA-V-----RAFAVAQMSSLLASPSPPLSQPSSRMAEM  154 (276)
Q Consensus        87 ~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~------~~-~-----~~~~~~~~~~ll~~~~~~~~~~~~~~~~~  154 (276)
                       ..+..+..+..++...+    ..+.....+++.+.      .+ .     ...++..+..+++..+          .++
T Consensus       561 -~d~~~I~~Lv~LLlsdd----~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs----------~~i  625 (2102)
T PLN03200        561 -ADAATISQLTALLLGDL----PESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK----------EET  625 (2102)
T ss_pred             -cchhHHHHHHHHhcCCC----hhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC----------HHH
Confidence             11223333444432221    22222222222111      01 0     1125556666665432          355


Q ss_pred             hHHhhhccccchhhhccccCCCch-----------------------HHHHHHHHHHHHhhhCc-----cchH-HHHHHH
Q psy16364        155 MFDEYSDRSSKIFNIKFSSRMPNH-----------------------MKYLGLLAMSKILKTHP-----KSVQ-SHRDLI  205 (276)
Q Consensus       155 L~~~~~~~~~~~ilGef~~~~~~n-----------------------~ryl~L~~l~~l~~~~~-----~~~~-~~~~~i  205 (276)
                      -+.++      |+++.|......+                       .+.-+-.+|..+.....     ..+. ....-+
T Consensus       626 kk~Aa------~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL  699 (2102)
T PLN03200        626 QEKAA------SVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPL  699 (2102)
T ss_pred             HHHHH------HHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHH
Confidence            66666      8888876654432                       11122244444443111     1111 235667


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhcCCcc-hHH-----HHHHHHHHHhhhcCCchHHHHHHHHHHHHhccCC
Q psy16364        206 MQCLDDKDESIRLRALDLLYGMVSKK-TLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNN  268 (276)
Q Consensus       206 ~~~l~~~D~~iq~ralell~~l~~~~-n~~-----~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~~  268 (276)
                      ++.|++.|..++..|++-+..++... +..     .++..|.+.|..-++ .-|+.-+..+..+|....
T Consensus       700 ~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~-~~k~~Aa~AL~~L~~~~~  767 (2102)
T PLN03200        700 IKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTL-EGKRNAARALAQLLKHFP  767 (2102)
T ss_pred             HHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCCh-HHHHHHHHHHHHHHhCCC
Confidence            88899999999999999987776544 332     346778888887764 889999999999998753

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.48  E-value=0.075  Score=43.84  Aligned_cols=75  Identities=16%  Similarity=0.212  Sum_probs=57.9

Q ss_pred             ccCCCchHHHHHHHHHHHHhhhCccchH-HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHhhh
Q psy16364        172 SSRMPNHMKYLGLLAMSKILKTHPKSVQ-SHRDLIMQCLDDKDESIRLRALDLLYGMVSK---KTLMEIVKKLMVHMDK  246 (276)
Q Consensus       172 ~~~~~~n~ryl~L~~l~~l~~~~~~~~~-~~~~~i~~~l~~~D~~iq~ralell~~l~~~---~n~~~iv~~l~~~l~~  246 (276)
                      +.+.++..|..++.++.+|+..+.--.. .....++.++.|+|.+||.-|..++..+..+   +.+...+.+++.+|..
T Consensus        34 L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~  112 (178)
T PF12717_consen   34 LRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN  112 (178)
T ss_pred             HCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence            3566678999999999999987754343 4447888899999999999999998666544   5577777777777755

>KOG1060|consensus

Probab=96.44  E-value=0.24  Score=49.24  Aligned_cols=89  Identities=13%  Similarity=0.281  Sum_probs=70.6

Q ss_pred             chHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCCchHHHHH
Q psy16364        177 NHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDEL  256 (276)
Q Consensus       177 ~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l  256 (276)
                      ...+|+.|..+..++...|+....|.+-++-+-.|++ .++.-=+|.|..+.|..|+..|..|+..|+..++. .|-..-
T Consensus       335 ~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~-~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~-~faa~a  412 (968)
T KOG1060|consen  335 REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPT-QVKILKLEILSNLANESNISEILRELQTYIKSSDR-SFAAAA  412 (968)
T ss_pred             CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHH-HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCch-hHHHHH
Confidence            3478888998888888888888888776554433432 45556688899999999999999999999999885 788888


Q ss_pred             HHHHHHHhccC
Q psy16364        257 LSKVIDICSQN  267 (276)
Q Consensus       257 ~~~i~~~~~~~  267 (276)
                      +..|-.+|...
T Consensus       413 V~AiGrCA~~~  423 (968)
T KOG1060|consen  413 VKAIGRCASRI  423 (968)
T ss_pred             HHHHHHHHHhh
Confidence            88888777653

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=96.42  E-value=0.14  Score=56.51  Aligned_cols=207  Identities=13%  Similarity=0.153  Sum_probs=114.7

Q ss_pred             hHHHHHhhhcCCChhHHhhHHHHHHhhcCC--CcH-----HHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCc---
Q psy16364         15 HRDLIMQCLDDKDESIRLRALDLLYGMVSK--KTL-----MEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQ---   84 (276)
Q Consensus        15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~--~n~-----~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~---   84 (276)
                      -++.+.++|++++..++..|...+..++..  +++     ...|+.|+..|...+. +.+.+....+..+....+..   
T Consensus       610 gL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~-~v~keAA~AL~nL~~~~~~~q~~  688 (2102)
T PLN03200        610 ALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTE-AVATQSARALAALSRSIKENRKV  688 (2102)
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCh-HHHHHHHHHHHHHHhCCCHHHHH
Confidence            467889999999999999999999999863  222     2357888888876554 67777777777665310000   


Q ss_pred             cCCChhhHHHHHHHHHHhcCCcchHHHHH----------------------HHHHHHHH-hhhhHHHHHHHHHHhhcCCC
Q psy16364         85 YITNFEWYMTVLVELTRMEGTRHGALVAA----------------------QMMDVAIR-VSAVRAFAVAQMSSLLASPS  141 (276)
Q Consensus        85 ~~~~~~W~v~~ll~ll~~~~~~~~~~i~~----------------------~l~~vi~~-~~~~~~~~~~~~~~ll~~~~  141 (276)
                      +... .=.+.-+++++.............                      .+..++.. .+..|..++..+..+.....
T Consensus       689 ~~v~-~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~  767 (2102)
T PLN03200        689 SYAA-EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP  767 (2102)
T ss_pred             HHHH-cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence            0000 001334555555432211111112                      22222221 12233344444444433211


Q ss_pred             CCCCCCCchhhhhhHHhhhccccchhhhccccCCCchHHHH--HHHHHHHHhhhCc------------cchHHHHHHHHH
Q psy16364        142 PPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYL--GLLAMSKILKTHP------------KSVQSHRDLIMQ  207 (276)
Q Consensus       142 ~~~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl--~L~~l~~l~~~~~------------~~~~~~~~~i~~  207 (276)
                               ..+++...+...++.--+-+++...+....-.  +|+++..+++...            -..+.-.+-++.
T Consensus       768 ---------~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~  838 (2102)
T PLN03200        768 ---------VDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVR  838 (2102)
T ss_pred             ---------hhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHH
Confidence                     12333333311122233334444444333323  6777777777521            113445677888


Q ss_pred             HhcCCCHHHHHHHHHHHHhcCCcch
Q psy16364        208 CLDDKDESIRLRALDLLYGMVSKKT  232 (276)
Q Consensus       208 ~l~~~D~~iq~ralell~~l~~~~n  232 (276)
                      ||.+..+++|.||.|.+..+|...-
T Consensus       839 ~l~~~~p~~~~kai~il~~~~~~~~  863 (2102)
T PLN03200        839 CLAEGHPLVQDKAIEILSRLCRDQP  863 (2102)
T ss_pred             HHHcCChHHHHHHHHHHHHHhccCh
Confidence            9999999999999999999997653

>PRK09687 putative lyase; Provisional

Probab=96.32  E-value=0.54  Score=41.79  Aligned_cols=61  Identities=13%  Similarity=0.012  Sum_probs=39.4

Q ss_pred             hHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc-HHHHHHHHHHhhhhcCCchhHHHHHHHHH
Q psy16364         15 HRDLIMQCLDDKDESIRLRALDLLYGMVSKKT-LMEIVKKLMVHMDKAEGTMYRDELLSKVI   75 (276)
Q Consensus        15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n-~~~iv~~L~~~L~~~~~~~~r~~li~~I~   75 (276)
                      -.+.+..++.|+|+.+|..|...|..+-.+.. -...++.|...+....+...|...+..+.
T Consensus        55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG  116 (280)
T PRK09687         55 VFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINATG  116 (280)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence            35567778899999999999999998875443 24555666554333333356655554444

>KOG2171|consensus

Probab=96.25  E-value=0.28  Score=50.45  Aligned_cols=189  Identities=17%  Similarity=0.260  Sum_probs=114.3

Q ss_pred             HHhHHHHHhhh-cCCChhHHhhHHHHHHhhcCC---CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCC
Q psy16364         13 QSHRDLIMQCL-DDKDESIRLRALDLLYGMVSK---KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITN   88 (276)
Q Consensus        13 ~~~~~~I~~~L-~d~D~sIr~~aL~Ll~~l~~~---~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~   88 (276)
                      +.-+..++.++ .++-++||++-.+++.+++..   .-|-++++-|.+-.+..++ .+|+ ..-.|+..+..   .|...
T Consensus        78 ~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~-~~rE-~al~il~s~~~---~~~~~  152 (1075)
T KOG2171|consen   78 QSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNP-SLRE-SALLILSSLPE---TFGNT  152 (1075)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCc-chhH-HHHHHHHhhhh---hhccc
Confidence            45666677775 479999999999999999863   4577888877777666655 6664 44455544432   44433


Q ss_pred             hhhHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchh
Q psy16364         89 FEWYMTVLVELTRM-EGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIF  167 (276)
Q Consensus        89 ~~W~v~~ll~ll~~-~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~i  167 (276)
                      ..=|.+.+..++.- .++.... +         |+-++|  ++..++..+++...    .......++-...      .+
T Consensus       153 ~~~~~~~l~~lf~q~~~d~s~~-v---------r~~a~r--A~~a~~~~~~~~~~----~~~~~~~llP~~l------~v  210 (1075)
T KOG2171|consen  153 LQPHLDDLLRLFSQTMTDPSSP-V---------RVAAVR--ALGAFAEYLENNKS----EVDKFRDLLPSLL------NV  210 (1075)
T ss_pred             cchhHHHHHHHHHHhccCCcch-H---------HHHHHH--HHHHHHHHhccchH----HHHHHHHHhHHHH------HH
Confidence            33355566666543 2222111 1         122222  33344444431100    0000111122222      67


Q ss_pred             hhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHH-Hh-----cCCCHHHHHHHHHHHHhcC
Q psy16364        168 NIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQ-CL-----DDKDESIRLRALDLLYGMV  228 (276)
Q Consensus       168 lGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~-~l-----~~~D~~iq~ralell~~l~  228 (276)
                      +++....-+...--..+.++..++...|.+..+|...|+. +|     ++.|.++|++|+|++..+.
T Consensus       211 l~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~  277 (1075)
T KOG2171|consen  211 LQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLS  277 (1075)
T ss_pred             hHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence            7777666555444578899999999999999888777776 44     4789999999999996653

>KOG1824|consensus

Probab=96.10  E-value=0.31  Score=49.47  Aligned_cols=218  Identities=12%  Similarity=0.133  Sum_probs=119.5

Q ss_pred             hhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHH-HHHHHHhhhcCCccCC
Q psy16364          9 PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELL-SKVIDICSQNNYQYIT   87 (276)
Q Consensus         9 P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li-~~I~~~~~~~~y~~~~   87 (276)
                      +....++...|+++++.|...|+.+|---+-++. -.|....+|.++.+....   .+|.+++ ....+....    -..
T Consensus       852 ~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~-vgnl~~yLpfil~qi~sq---pk~QyLLLhSlkevi~~----~sv  923 (1233)
T KOG1824|consen  852 LSPQNELKDTIIEAFNSPSEDVKSAASYALGSLA-VGNLPKYLPFILEQIESQ---PKRQYLLLHSLKEVIVS----ASV  923 (1233)
T ss_pred             CCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhh-cCchHhHHHHHHHHHhcc---hHhHHHHHHHHHHHHHH----hcc
Confidence            3344577889999999999999998877666654 457777778777765533   2343332 222222110    001


Q ss_pred             ChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhh-hHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccch
Q psy16364         88 NFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSA-VRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKI  166 (276)
Q Consensus        88 ~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  166 (276)
                      +          .+    .....+||..+..=+...++ .|+-..+.+..+ -.++          ++.|.         .
T Consensus       924 d----------~~----~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL-~l~e----------pesLl---------p  969 (1233)
T KOG1824|consen  924 D----------GL----KPYVEKIWALLFKHCECAEEGTRNVVAECLGKL-VLIE----------PESLL---------P  969 (1233)
T ss_pred             c----------hh----hhhHHHHHHHHHHhcccchhhhHHHHHHHhhhH-HhCC----------hHHHH---------H
Confidence            1          00    01123444444333322221 222222222222 1111          22222         2


Q ss_pred             hhhccccCCCchHHHHHHHHHHHHhhhCccchH----HHHHHHHHHhcCCCHHHHHHHHHHHHhcC-C-cchHHHHHHHH
Q psy16364        167 FNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQ----SHRDLIMQCLDDKDESIRLRALDLLYGMV-S-KKTLMEIVKKL  240 (276)
Q Consensus       167 ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~----~~~~~i~~~l~~~D~~iq~ralell~~l~-~-~~n~~~iv~~l  240 (276)
                      -+-+++.+...+.|-..+++.-....-.|.-+.    +....++..++|||..+||-|+-.+-.-+ | ++-++++.++|
T Consensus       970 kL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeL 1049 (1233)
T KOG1824|consen  970 KLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPEL 1049 (1233)
T ss_pred             HHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHH
Confidence            234445566777888777776666655554333    33334555779999999999999885444 3 46678888888


Q ss_pred             HHHhhhcCCchHHHHHHHHHHHHhccCCccccCC
Q psy16364        241 MVHMDKAEGTMYRDELLSKVIDICSQNNYQYITN  274 (276)
Q Consensus       241 ~~~l~~~~~~~~~~~l~~~i~~~~~~~~y~~~~~  274 (276)
                      ++-|-.-  ...|.|++..    .|+.-+.|+.|
T Consensus      1050 Lp~Ly~e--TkvrkelIre----VeMGPFKH~VD 1077 (1233)
T KOG1824|consen 1050 LPLLYSE--TKVRKELIRE----VEMGPFKHTVD 1077 (1233)
T ss_pred             HHHHHHh--hhhhHhhhhh----hcccCcccccc
Confidence            8877442  2566666543    34444444443

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=95.91  E-value=0.12  Score=38.56  Aligned_cols=97  Identities=16%  Similarity=0.147  Sum_probs=65.9

Q ss_pred             hhccccCCCchHHHHHHHHHHHHhhhCccchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch-HHH------
Q psy16364        168 NIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT-LME------  235 (276)
Q Consensus       168 lGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n-~~~------  235 (276)
                      +.+++...+...|.-++.++..++...+....     +..+.+..+|++.|..+|..|+-.+..++.... ...      
T Consensus        12 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   91 (120)
T cd00020          12 LVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAG   91 (120)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCC
Confidence            44444545556777777777777765433222     345678889999999999999999999986552 222      


Q ss_pred             HHHHHHHHhhhcCCchHHHHHHHHHHHHhc
Q psy16364        236 IVKKLMVHMDKAEGTMYRDELLSKVIDICS  265 (276)
Q Consensus       236 iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~  265 (276)
                      +++.|++.+...+ ...++....-+..+|+
T Consensus        92 ~l~~l~~~l~~~~-~~~~~~a~~~l~~l~~  120 (120)
T cd00020          92 GVPKLVNLLDSSN-EDIQKNATGALSNLAS  120 (120)
T ss_pred             ChHHHHHHHhcCC-HHHHHHHHHHHHHhhC
Confidence            3555666665554 5888888888777765

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=95.51  E-value=2.4  Score=40.92  Aligned_cols=99  Identities=14%  Similarity=0.125  Sum_probs=64.3

Q ss_pred             hhhccccCCCchHHHHHHHHHHHHhhhCcc--------ch--------H-HHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy16364        167 FNIKFSSRMPNHMKYLGLLAMSKILKTHPK--------SV--------Q-SHRDLIMQCLDDKDESIRLRALDLLYGMVS  229 (276)
Q Consensus       167 ilGef~~~~~~n~ryl~L~~l~~l~~~~~~--------~~--------~-~~~~~i~~~l~~~D~~iq~ralell~~l~~  229 (276)
                      -.|.+.......+|.-+|.++..+....+.        ..        + .....++..++.|=+++|.-|+.++.+++.
T Consensus       341 ~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~  420 (503)
T PF10508_consen  341 AIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA  420 (503)
T ss_pred             HHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence            345555555566787788888887554332        00        0 011167778888889999999999999998


Q ss_pred             cchHHHHHH---HHHHHhhh--cC----CchHHHHHHHHHHHHhc
Q psy16364        230 KKTLMEIVK---KLMVHMDK--AE----GTMYRDELLSKVIDICS  265 (276)
Q Consensus       230 ~~n~~~iv~---~l~~~l~~--~~----~~~~~~~l~~~i~~~~~  265 (276)
                      ..--..-+-   .+++||..  ++    ..+.|-+++..+.....
T Consensus       421 ~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~  465 (503)
T PF10508_consen  421 QPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST  465 (503)
T ss_pred             CHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence            765444433   34555522  22    24788889988886544

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=95.51  E-value=0.0085  Score=37.29  Aligned_cols=37  Identities=32%  Similarity=0.505  Sum_probs=31.8

Q ss_pred             ccccccChhhHH--HhHHHHHhhhcCCChhHHhhHHHHH
Q psy16364          2 SKILKTHPKSVQ--SHRDLIMQCLDDKDESIRLRALDLL   38 (276)
Q Consensus         2 ~~i~~~~P~~v~--~~~~~I~~~L~d~D~sIr~~aL~Ll   38 (276)
                      ..++.++|.++.  ..+..|...|.|++++||.+|++++
T Consensus         4 ~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll   42 (42)
T PF12765_consen    4 SSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL   42 (42)
T ss_pred             HHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence            356778888875  7888899999999999999999985

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=95.41  E-value=2.4  Score=39.81  Aligned_cols=197  Identities=21%  Similarity=0.294  Sum_probs=98.0

Q ss_pred             HhHHHHHhh-hcCCChhHHhhHHHHHHhhcCCC----cHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCC
Q psy16364         14 SHRDLIMQC-LDDKDESIRLRALDLLYGMVSKK----TLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITN   88 (276)
Q Consensus        14 ~~~~~I~~~-L~d~D~sIr~~aL~Ll~~l~~~~----n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~   88 (276)
                      +..+.++.. ++.+++..|..++.++..++||-    .+.+++..+...+....+...+...+.-               
T Consensus       189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---------------  253 (415)
T PF12460_consen  189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEI---------------  253 (415)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHH---------------
Confidence            445555544 55678999999999999999982    2344444444443111111222221111               


Q ss_pred             hhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhH-Hhhhccccchh
Q psy16364         89 FEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMF-DEYSDRSSKIF  167 (276)
Q Consensus        89 ~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~i  167 (276)
                      .-|...    =+-+-|...+.+..+.+.+++.. +++...+.+.+..++.+...+.+......-..|+ +=.......-+
T Consensus       254 ~~Wi~K----aLv~R~~~~~~~~~~~L~~lL~~-~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L  328 (415)
T PF12460_consen  254 LIWITK----ALVMRGHPLATELLDKLLELLSS-PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKL  328 (415)
T ss_pred             HHHHHH----HHHHcCCchHHHHHHHHHHHhCC-hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHH
Confidence            113321    11122233345555555555533 4444445555555554411111111111112221 11100000112


Q ss_pred             hhccccCCCchHHHHHHHHHHHHhhhCccc-----hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc
Q psy16364        168 NIKFSSRMPNHMKYLGLLAMSKILKTHPKS-----VQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK  231 (276)
Q Consensus       168 lGef~~~~~~n~ryl~L~~l~~l~~~~~~~-----~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~  231 (276)
                      +..|-... +..|---|.|+..+++.-|..     .++....++++|+-+|.+++.-+++-+..+....
T Consensus       329 ~~~~~~~~-~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  329 LEGFKEAD-DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHhhcC-hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            23332222 225555567777777765532     3455677788999999999999999996665543

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=94.97  E-value=2.5  Score=43.89  Aligned_cols=74  Identities=11%  Similarity=0.055  Sum_probs=46.6

Q ss_pred             chHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCCchHHHHH
Q psy16364        177 NHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDEL  256 (276)
Q Consensus       177 ~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l  256 (276)
                      ..+|.-+..+|.++..      ++..+.+...|+|+|..+|+.|..-|-.+-..+.....   |..-+...+ ...|.+-
T Consensus       821 ~~VR~~Aa~aL~~l~~------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~---L~~al~D~d-~~Vr~~A  890 (897)
T PRK13800        821 WQVRQGAARALAGAAA------DVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDA---LTTALTDSD-ADVRAYA  890 (897)
T ss_pred             hHHHHHHHHHHHhccc------cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHH---HHHHHhCCC-HHHHHHH
Confidence            3456666666654321      24457788999999999999999999665333343333   333333344 5788776


Q ss_pred             HHHH
Q psy16364        257 LSKV  260 (276)
Q Consensus       257 ~~~i  260 (276)
                      +..+
T Consensus       891 ~~aL  894 (897)
T PRK13800        891 RRAL  894 (897)
T ss_pred             HHHH
Confidence            6554

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=94.90  E-value=0.52  Score=41.31  Aligned_cols=87  Identities=17%  Similarity=0.208  Sum_probs=55.1

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC-Cc---HHHHHHHHHHhhhhc-CCchhHHHHHHHHHHHhhhcCCccCCC
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSK-KT---LMEIVKKLMVHMDKA-EGTMYRDELLSKVIDICSQNNYQYITN   88 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~-~n---~~~iv~~L~~~L~~~-~~~~~r~~li~~I~~~~~~~~y~~~~~   88 (276)
                      .-++.|.+.|+++++.+|.+|+..+..+... +|   ++..++++.+..... -++..+..-+..+..++-.++|.+.. 
T Consensus        54 Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l-  132 (254)
T PF04826_consen   54 GGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHML-  132 (254)
T ss_pred             CCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhH-
Confidence            3467889999999999999999999998643 44   344455555543332 23355555555566666555654432 


Q ss_pred             hhhHHHHHHHHHHh
Q psy16364         89 FEWYMTVLVELTRM  102 (276)
Q Consensus        89 ~~W~v~~ll~ll~~  102 (276)
                      . =++.-+++++..
T Consensus       133 ~-~~i~~ll~LL~~  145 (254)
T PF04826_consen  133 A-NYIPDLLSLLSS  145 (254)
T ss_pred             H-hhHHHHHHHHHc
Confidence            1 245556666654

>KOG1020|consensus

Probab=94.59  E-value=0.99  Score=48.04  Aligned_cols=113  Identities=16%  Similarity=0.212  Sum_probs=80.6

Q ss_pred             HHHHHHHHH-HhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHH
Q psy16364        112 AAQMMDVAI-RVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKI  190 (276)
Q Consensus       112 ~~~l~~vi~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l  190 (276)
                      ...++.++. ..+++|.+|.+.++.+.+....+-.     -+.+..         .+-|+|.++... .|=-+++.+.+.
T Consensus       818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~-----~~dvq~---------~Vh~R~~Dssas-VREAaldLvGrf  882 (1692)
T KOG1020|consen  818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLS-----RPDVQE---------AVHGRLNDSSAS-VREAALDLVGRF  882 (1692)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc-----CHHHHH---------HHHHhhccchhH-HHHHHHHHHhhh
Confidence            334444443 2457899999988888766432211     133332         347888777654 787888888899


Q ss_pred             hhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-chHHHHHHH
Q psy16364        191 LKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK-KTLMEIVKK  239 (276)
Q Consensus       191 ~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~-~n~~~iv~~  239 (276)
                      +-.+|+.+.++.+.|.+-..|+.+++|+|+...+-.||.. ++...++.-
T Consensus       883 vl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~  932 (1692)
T KOG1020|consen  883 VLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDM  932 (1692)
T ss_pred             hhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHH
Confidence            9999999999999999999999999999999998888753 344444333

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=94.40  E-value=3.5  Score=40.17  Aligned_cols=60  Identities=17%  Similarity=0.269  Sum_probs=46.2

Q ss_pred             cccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC--CCcHHHHHHHHHHhhhhcC
Q psy16364          3 KILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS--KKTLMEIVKKLMVHMDKAE   62 (276)
Q Consensus         3 ~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~--~~n~~~iv~~L~~~L~~~~   62 (276)
                      |.++..|++-++-++..+++.+|.|..||..|+-=|-.+|.  ++.+..++.-|.+.|..-+
T Consensus        48 kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd  109 (556)
T PF05918_consen   48 KFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDD  109 (556)
T ss_dssp             HHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---
T ss_pred             HHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhccc
Confidence            56788999999999999999999999999999999999995  5678888888887766433

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1061|consensus

Probab=94.30  E-value=0.9  Score=45.07  Aligned_cols=87  Identities=13%  Similarity=0.280  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCCchHHHHHH
Q psy16364        178 HMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELL  257 (276)
Q Consensus       178 n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~  257 (276)
                      -+.|++|.-...+.+..|+.. .+...++-|-.+.-+.++.-=+|.+..+++.+|+..++.||..|-..-|. +|=++-+
T Consensus       294 e~qyvaLrNi~lil~~~p~~~-~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~-~fvrkaI  371 (734)
T KOG1061|consen  294 EIQYVALRNINLILQKRPEIL-KVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDV-DFVRKAV  371 (734)
T ss_pred             hhhHHHHhhHHHHHHhChHHH-HhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCH-HHHHHHH
Confidence            578888877777777777733 33333333444555677778888888889999999999999998766663 7777777


Q ss_pred             HHHHHHhcc
Q psy16364        258 SKVIDICSQ  266 (276)
Q Consensus       258 ~~i~~~~~~  266 (276)
                      ..|-.++-|
T Consensus       372 raig~~aik  380 (734)
T KOG1061|consen  372 RAIGRLAIK  380 (734)
T ss_pred             HHhhhhhhh
Confidence            766666654

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=94.21  E-value=0.071  Score=30.58  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=23.2

Q ss_pred             HHHHHhhhcCCChhHHhhHHHHHHhhc
Q psy16364         16 RDLIMQCLDDKDESIRLRALDLLYGMV   42 (276)
Q Consensus        16 ~~~I~~~L~d~D~sIr~~aL~Ll~~l~   42 (276)
                      ++.++++|+|+++.||..|..-+-.++
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~   28 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIA   28 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            577899999999999999999888775

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1020|consensus

Probab=93.79  E-value=7.8  Score=41.70  Aligned_cols=37  Identities=19%  Similarity=0.264  Sum_probs=30.3

Q ss_pred             CchHHHHH-HHHHHHHhhhCccchH-HHHHHHHHHhcCC
Q psy16364        176 PNHMKYLG-LLAMSKILKTHPKSVQ-SHRDLIMQCLDDK  212 (276)
Q Consensus       176 ~~n~ryl~-L~~l~~l~~~~~~~~~-~~~~~i~~~l~~~  212 (276)
                      +++.|+++ +.+|..++.+.|.+.- .|..++..+|.+.
T Consensus      1049 ~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~ 1087 (1692)
T KOG1020|consen 1049 ESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSK 1087 (1692)
T ss_pred             cchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhcc
Confidence            35667776 6788889999998776 9999999999876

>KOG2259|consensus

Probab=93.67  E-value=5.5  Score=39.35  Aligned_cols=86  Identities=19%  Similarity=0.233  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHH--HhcCCcchHHHHHHHHHHHhhhcCCchHHHHH
Q psy16364        179 MKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLL--YGMVSKKTLMEIVKKLMVHMDKAEGTMYRDEL  256 (276)
Q Consensus       179 ~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell--~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l  256 (276)
                      .|.-++.+|..++.. ....+++..+|+.+|.|..+++|+-..|+|  ....+.+-+...|.+|++-|...  |.=|.++
T Consensus       426 VRL~ai~aL~~Is~~-l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~ky--PqDrd~i  502 (823)
T KOG2259|consen  426 VRLKAIFALTMISVH-LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKY--PQDRDEI  502 (823)
T ss_pred             HHHHHHHHHHHHHHH-heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhC--CCCcHHH
Confidence            455566666666654 666778889999999999999999999998  23345666777788888888664  1235566


Q ss_pred             HHHHHHHhccC
Q psy16364        257 LSKVIDICSQN  267 (276)
Q Consensus       257 ~~~i~~~~~~~  267 (276)
                      ..-+..+..++
T Consensus       503 ~~cm~~iGqnH  513 (823)
T KOG2259|consen  503 LRCMGRIGQNH  513 (823)
T ss_pred             HHHHHHHhccC
Confidence            66666665554

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=93.60  E-value=0.36  Score=35.80  Aligned_cols=52  Identities=21%  Similarity=0.450  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHHHHhhhCccchH----HHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy16364        178 HMKYLGLLAMSKILKTHPKSVQ----SHRDLIMQCLDDKDESIRLRALDLLYGMVS  229 (276)
Q Consensus       178 n~ryl~L~~l~~l~~~~~~~~~----~~~~~i~~~l~~~D~~iq~ralell~~l~~  229 (276)
                      |.|+=||.++...+..-+....    ...+-++.|+.|.|..+|.=|+|-++.++.
T Consensus         1 n~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k   56 (97)
T PF12755_consen    1 NYRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISK   56 (97)
T ss_pred             CchhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            5677788888887766554444    445556679999999999999999988864

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=93.55  E-value=5.1  Score=40.41  Aligned_cols=59  Identities=20%  Similarity=0.279  Sum_probs=44.5

Q ss_pred             HhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhh--cCCchHHHHHHHHHHHHhccC
Q psy16364        208 CLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK--AEGTMYRDELLSKVIDICSQN  267 (276)
Q Consensus       208 ~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~--~~~~~~~~~l~~~i~~~~~~~  267 (276)
                      +-.+.|..+.-.=++.+..+.+.+|...+..|++.|...  .+ +++=++.+..|..++.+.
T Consensus       328 ~~~~~~i~~~lek~~~~t~l~~~~n~~~~L~e~~~y~~~~~~~-~e~v~~~ik~lgd~~sk~  388 (757)
T COG5096         328 IEYNDDIYIKLEKLDQLTRLADDQNLSQILLELIYYIAENHID-AEMVSEAIKALGDLASKA  388 (757)
T ss_pred             hhccchHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhhhh
Confidence            444566666666667777888999999999999999877  55 477778888887777664

>KOG0915|consensus

Probab=93.52  E-value=13  Score=40.18  Aligned_cols=224  Identities=14%  Similarity=0.128  Sum_probs=120.3

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC-Cc-HHHHHHHHHHhhh-hcCCchhHHHHHHH--HHHHhhhcCCccCCC
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSK-KT-LMEIVKKLMVHMD-KAEGTMYRDELLSK--VIDICSQNNYQYITN   88 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~-~n-~~~iv~~L~~~L~-~~~~~~~r~~li~~--I~~~~~~~~y~~~~~   88 (276)
                      .-++++.+-=-|||..|+.+--++=-+++.. ++ +.+..++..+.|- .....+||..-..-  +.++..      .+|
T Consensus       998 kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~------g~~ 1071 (1702)
T KOG0915|consen  998 KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQ------GRP 1071 (1702)
T ss_pred             HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHc------CCC
Confidence            4455555555699999999999998888865 33 3334444444332 12223555432111  111111      123


Q ss_pred             hhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhh-hhH---HHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhcccc
Q psy16364         89 FEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVS-AVR---AFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSS  164 (276)
Q Consensus        89 ~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~-~~~---~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~  164 (276)
                      +.-..+++            +++|+.+..+.--.. ++|   ..+.+.++.+.  ++.+..+.+-.+.+++-.+.     
T Consensus      1072 ~~~~~e~l------------pelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~--vr~~d~~~~~~~~~~l~~iL----- 1132 (1702)
T KOG0915|consen 1072 FDQVKEKL------------PELWEAAFRVMDDIKESVREAADKAARALSKLC--VRICDVTNGAKGKEALDIIL----- 1132 (1702)
T ss_pred             hHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhcccCCcccHHHHHHHHH-----
Confidence            22222322            345555444433221 122   12233333332  11111111112344443322     


Q ss_pred             chhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHH---------------HHHHHhcCCCHHHHHHHHHHH-HhcC
Q psy16364        165 KIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRD---------------LIMQCLDDKDESIRLRALDLL-YGMV  228 (276)
Q Consensus       165 ~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~---------------~i~~~l~~~D~~iq~ralell-~~l~  228 (276)
                      -+.+|+=+.+..+..|-..+.++++|++..++.+..|-.               ++++++.-+-..+++-|+|=+ ...+
T Consensus      1133 PfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~a 1212 (1702)
T KOG0915|consen 1133 PFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAA 1212 (1702)
T ss_pred             HHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhh
Confidence            255666555777889999999999999987665544443               344444434467888888876 3445


Q ss_pred             CcchHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        229 SKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       229 ~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      ...-..+.++.+++|+..    ..-++|+-+++.+...
T Consensus      1213 ksspmmeTi~~ci~~iD~----~vLeelip~l~el~R~ 1246 (1702)
T KOG0915|consen 1213 KSSPMMETINKCINYIDI----SVLEELIPRLTELVRG 1246 (1702)
T ss_pred             cCCcHHHHHHHHHHhhhH----HHHHHHHHHHHHHHhc
Confidence            667778888888888655    3456666666666543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=93.43  E-value=4.3  Score=34.35  Aligned_cols=60  Identities=13%  Similarity=0.092  Sum_probs=40.4

Q ss_pred             hhccccCCCchHHHHHHHHHHHHhhhCc---c------chHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy16364        168 NIKFSSRMPNHMKYLGLLAMSKILKTHP---K------SVQSHRDLIMQCLDDKDESIRLRALDLLYGM  227 (276)
Q Consensus       168 lGef~~~~~~n~ryl~L~~l~~l~~~~~---~------~~~~~~~~i~~~l~~~D~~iq~ralell~~l  227 (276)
                      +.....++....|...+..+..++...+   .      ..+.....+..++.|+|.++|+-|-+.+..+
T Consensus       136 l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l  204 (228)
T PF12348_consen  136 LSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL  204 (228)
T ss_dssp             HHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence            3444466666777777777777766655   1      1356778888899999999999999998555

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=92.61  E-value=1.7  Score=43.75  Aligned_cols=205  Identities=16%  Similarity=0.156  Sum_probs=108.4

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhh-cCCchhHHHHHHHHHHHhhhcCCccCCChhhH
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK-AEGTMYRDELLSKVIDICSQNNYQYITNFEWY   92 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~-~~~~~~r~~li~~I~~~~~~~~y~~~~~~~W~   92 (276)
                      ++...+..|=.+.|..+...-+..+..+...+|...+..+++.+... ..+.++-.+.+..|...+.    +......-+
T Consensus       320 ~~~~~~f~~~~~~~i~~~lek~~~~t~l~~~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~s----k~~s~~~~~  395 (757)
T COG5096         320 DKVKKLFLIEYNDDIYIKLEKLDQLTRLADDQNLSQILLELIYYIAENHIDAEMVSEAIKALGDLAS----KAESSVNDC  395 (757)
T ss_pred             HHHhhhhhhhccchHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhh----hhhhhHHHH
Confidence            45566666777788899999999998888889988888888888765 1222444555555555544    332222335


Q ss_pred             HHHHHHHHH---hcCCcchHHH-----HHHHH---HHHHHh----hhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHH
Q psy16364         93 MTVLVELTR---MEGTRHGALV-----AAQMM---DVAIRV----SAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFD  157 (276)
Q Consensus        93 v~~ll~ll~---~~~~~~~~~i-----~~~l~---~vi~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~  157 (276)
                      +..++.+++   ..|.+...+.     |..+.   .++...    +.+....+-+....++   .... +    +.....
T Consensus       396 I~~~lel~~g~~~~~~Yi~~e~~~~~~i~v~r~~~~~lr~l~~~~~~~~~~~l~~~~e~l~---~~~~-~----P~~k~~  467 (757)
T COG5096         396 ISELLELLEGVWIRGSYIVQEVRIVDCISVIRISVLVLRILPNEYPKILLRGLYALEETLE---LQSR-E----PRAKSV  467 (757)
T ss_pred             HHHHHHhccchhhccchhhhhhcccceeeeeehhcchhhhcCCcchhhhHHHHHHHHHHhh---cccc-C----cHHHHH
Confidence            667777776   4444433332     21111   223222    2332233333344443   1010 1    223333


Q ss_pred             hhhccccchhhhccccCCCch------------------HHHHHHHHHHHHhhhCccchHH----H-HHHHHHHhc-CCC
Q psy16364        158 EYSDRSSKIFNIKFSSRMPNH------------------MKYLGLLAMSKILKTHPKSVQS----H-RDLIMQCLD-DKD  213 (276)
Q Consensus       158 ~~~~~~~~~ilGef~~~~~~n------------------~ryl~L~~l~~l~~~~~~~~~~----~-~~~i~~~l~-~~D  213 (276)
                      . ....|+|++|+|.+....-                  ++|--+..-.|+....++...+    . ++....|.+ ..+
T Consensus       468 ~-~~~~~~wl~ge~~~~i~r~~~~~l~~~~~~~~~E~levq~~Il~~svkl~~~~~~~~~~~~~~~d~~v~~~~~~~v~~  546 (757)
T COG5096         468 T-DKYLGAWLLGEFSDIIPRLEPELLRIAISNFVDETLEVQYTILMSSVKLIANSIRKAKQCNSELDQDVLRRCFDYVLV  546 (757)
T ss_pred             H-hhhhHHHhHHHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhCcHhhhhccchhccHHHHHHHhccCC
Confidence            3 0112459999997654321                  2333344444555444433322    2 234444554 466


Q ss_pred             HHHHHHHHHHHHhcCCcch
Q psy16364        214 ESIRLRALDLLYGMVSKKT  232 (276)
Q Consensus       214 ~~iq~ralell~~l~~~~n  232 (276)
                      .++|.||.=|- .+.+.++
T Consensus       547 ~DlRDra~my~-~~lst~~  564 (757)
T COG5096         547 PDLRDRARMYS-RLLSTPL  564 (757)
T ss_pred             hhHHHHHHHHH-HHhcCCC
Confidence            78999998333 5554333

>KOG0212|consensus

Probab=92.08  E-value=5.5  Score=38.62  Aligned_cols=77  Identities=18%  Similarity=0.195  Sum_probs=58.0

Q ss_pred             hhhhccccCCCchHHHHHHHHHHHHhhhCccchHHH----HHHHHHHhcCCCHHHHHHHHHHHHhcCCcchH---HHHHH
Q psy16364        166 IFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSH----RDLIMQCLDDKDESIRLRALDLLYGMVSKKTL---MEIVK  238 (276)
Q Consensus       166 ~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~----~~~i~~~l~~~D~~iq~ralell~~l~~~~n~---~~iv~  238 (276)
                      .++..|+......+|.-.|.-+.-+....|+-+-.|    -.+++..|.|++.++--++++++..+|+.++-   ...+.
T Consensus       339 ~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~  418 (675)
T KOG0212|consen  339 EVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLL  418 (675)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHH
Confidence            567777777777788888888888888888766555    45566677899999999999999999987655   44444


Q ss_pred             HHHH
Q psy16364        239 KLMV  242 (276)
Q Consensus       239 ~l~~  242 (276)
                      .|++
T Consensus       419 sLL~  422 (675)
T KOG0212|consen  419 SLLE  422 (675)
T ss_pred             HHHH
Confidence            4443

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=92.06  E-value=0.34  Score=35.95  Aligned_cols=35  Identities=26%  Similarity=0.533  Sum_probs=30.4

Q ss_pred             hhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364          9 PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS   43 (276)
Q Consensus         9 P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~   43 (276)
                      ++.++..++-++.|+.|+|..||-.|.+-++.++.
T Consensus        22 ~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k   56 (97)
T PF12755_consen   22 SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISK   56 (97)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            34566778888999999999999999999999874

>KOG0212|consensus

Probab=91.85  E-value=13  Score=36.11  Aligned_cols=236  Identities=21%  Similarity=0.282  Sum_probs=126.9

Q ss_pred             hHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC--CC----cHHHHHHHHHHhhhhcCCchhH--HHHHHHHH-HHhhhc
Q psy16364         11 SVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS--KK----TLMEIVKKLMVHMDKAEGTMYR--DELLSKVI-DICSQN   81 (276)
Q Consensus        11 ~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~--~~----n~~~iv~~L~~~L~~~~~~~~r--~~li~~I~-~~~~~~   81 (276)
                      +++...+-++.|++|+|.-||--|.+-++.++.  +.    .+.+|...|.+....++. +.|  .|+..+.+ .+..+ 
T Consensus        81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~-~V~~~aeLLdRLikdIVte-  158 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQ-NVRGGAELLDRLIKDIVTE-  158 (675)
T ss_pred             HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcc-ccccHHHHHHHHHHHhccc-
Confidence            577888889999999999999999999999874  33    344555555554443332 111  13333333 11111 


Q ss_pred             CCccCCChhhHHHHHHHHHHh----cCCc----------------------chHHHHHHHHHHHH-HhhhhHHHHHHHHH
Q psy16364         82 NYQYITNFEWYMTVLVELTRM----EGTR----------------------HGALVAAQMMDVAI-RVSAVRAFAVAQMS  134 (276)
Q Consensus        82 ~y~~~~~~~W~v~~ll~ll~~----~~~~----------------------~~~~i~~~l~~vi~-~~~~~~~~~~~~~~  134 (276)
                           .++.+-...++.+++.    .+..                      .-+++.+.+...+. ..+++|.-+-..+.
T Consensus       159 -----~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~  233 (675)
T KOG0212|consen  159 -----SASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLS  233 (675)
T ss_pred             -----cccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence                 0112222233333322    1110                      01233333333332 23344433333444


Q ss_pred             HhhcCCCCCCCCCCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccch----HHHHHHHHHHhc
Q psy16364        135 SLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSV----QSHRDLIMQCLD  210 (276)
Q Consensus       135 ~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~----~~~~~~i~~~l~  210 (276)
                      ..+..++.   .+.+ + . ..+      .+.++|--+.+.++-++-.++.-+-.+++..+..+    ++....++.|+.
T Consensus       234 ~fL~eI~s---~P~s-~-d-~~~------~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s  301 (675)
T KOG0212|consen  234 EFLAEIRS---SPSS-M-D-YDD------MINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLS  301 (675)
T ss_pred             HHHHHHhc---Cccc-c-C-ccc------chhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCC
Confidence            44443321   0000 0 0 000      12556655556666667777777777888776433    445567788998


Q ss_pred             CCCHH-HHHHHH---HHHHhcCCcchHH------HHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        211 DKDES-IRLRAL---DLLYGMVSKKTLM------EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       211 ~~D~~-iq~ral---ell~~l~~~~n~~------~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      +.+.. ++--|-   +++.++++..-.+      .|++-|.+|+.... .+-|.....=|..+-.+
T Consensus       302 ~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~-~~tri~~L~Wi~~l~~~  366 (675)
T KOG0212|consen  302 DTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDR-EETRIAVLNWIILLYHK  366 (675)
T ss_pred             CCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHhh
Confidence            87773 544443   3445666655544      88888888887654 47777777777666544

>KOG2213|consensus

Probab=91.31  E-value=12  Score=34.70  Aligned_cols=59  Identities=22%  Similarity=0.276  Sum_probs=50.9

Q ss_pred             cccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhc
Q psy16364          3 KILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKA   61 (276)
Q Consensus         3 ~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~   61 (276)
                      |.++..|++..+-++.=++|.+|.|.+||+.|+.=+=-.|..++...+.+.|.+.|.++
T Consensus        50 ~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~  108 (460)
T KOG2213|consen   50 RFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKA  108 (460)
T ss_pred             HHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHHH
Confidence            45678899999999999999999999999999988888888888888888888777654

>KOG0213|consensus

Probab=91.18  E-value=14  Score=37.17  Aligned_cols=205  Identities=12%  Similarity=0.130  Sum_probs=108.6

Q ss_pred             HhhhcCCChhHHhhHHHHHHhhcCC-------CcHHHHHHHHHHhhhhcCC--chhHHHHHHHHHHHhhhcCCccCCChh
Q psy16364         20 MQCLDDKDESIRLRALDLLYGMVSK-------KTLMEIVKKLMVHMDKAEG--TMYRDELLSKVIDICSQNNYQYITNFE   90 (276)
Q Consensus        20 ~~~L~d~D~sIr~~aL~Ll~~l~~~-------~n~~~iv~~L~~~L~~~~~--~~~r~~li~~I~~~~~~~~y~~~~~~~   90 (276)
                      .+-|...++.|.-..|.-+.+++|-       .+++.++|.|.-.|+.-..  .+--.+++.+|+....    .|++.-+
T Consensus       847 yEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp----E~v~aRE  922 (1172)
T KOG0213|consen  847 YEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP----EYVSARE  922 (1172)
T ss_pred             HHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc----ccCCHHH
Confidence            4568889999999999998888763       5788999999988875321  0111235666665555    5788889


Q ss_pred             hHHHHHHHHHHhcCCcchHHHHHHH---HHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchh
Q psy16364         91 WYMTVLVELTRMEGTRHGALVAAQM---MDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIF  167 (276)
Q Consensus        91 W~v~~ll~ll~~~~~~~~~~i~~~l---~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~i  167 (276)
                      |.-+ .+.|+..... +.+++-..-   ...+++.-+-+.    -+..++.+-..        ...-.+.|  ..+++.|
T Consensus       923 WMRI-cfeLlelLka-hkK~iRRaa~nTfG~IakaIGPqd----VLatLlnnLkv--------qeRq~Rvc--TtvaIaI  986 (1172)
T KOG0213|consen  923 WMRI-CFELLELLKA-HKKEIRRAAVNTFGYIAKAIGPQD----VLATLLNNLKV--------QERQNRVC--TTVAIAI  986 (1172)
T ss_pred             HHHH-HHHHHHHHHH-HHHHHHHHHHhhhhHHHHhcCHHH----HHHHHHhcchH--------HHHHhchh--hhhhhhh
Confidence            9853 3334333211 112211000   001111100000    00111111000        00011111  2334566


Q ss_pred             hhccccCC-------------CchHHHHHHHHHHHHhhhCccch----HHHHHHHHHHhcCCCHHHHHHHHHHHHhc---
Q psy16364        168 NIKFSSRM-------------PNHMKYLGLLAMSKILKTHPKSV----QSHRDLIMQCLDDKDESIRLRALDLLYGM---  227 (276)
Q Consensus       168 lGef~~~~-------------~~n~ryl~L~~l~~l~~~~~~~~----~~~~~~i~~~l~~~D~~iq~ralell~~l---  227 (276)
                      +||++...             +-|..-=.|.+|..|...-.+.-    --....+.+.|-|.|..=||-|..++--|   
T Consensus       987 VaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen  987 VAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred             hhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence            66664321             22333334666666666544333    33356677788899999999999997444   


Q ss_pred             CCcchHHHHHHHHHHHh
Q psy16364        228 VSKKTLMEIVKKLMVHM  244 (276)
Q Consensus       228 ~~~~n~~~iv~~l~~~l  244 (276)
                      +-..-.++..-+|++++
T Consensus      1067 ~~g~g~eda~iHLLN~i 1083 (1172)
T KOG0213|consen 1067 VPGTGCEDALIHLLNLI 1083 (1172)
T ss_pred             CCCcCcHHHHHHHHHHh
Confidence            33445566677777776

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=91.01  E-value=11  Score=33.61  Aligned_cols=66  Identities=18%  Similarity=0.230  Sum_probs=52.5

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHH--hhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhh
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLY--GMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ   80 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~--~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~   80 (276)
                      -....|..++.++|+.||..|+.-+-  .+.+++.+.+.++-+.+.+.. ++...|...++.|.++...
T Consensus        27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~   94 (298)
T PF12719_consen   27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK-DDEEVKITALKALFDLLLT   94 (298)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHH
Confidence            34455679999999999999998865  556888899988999988844 4558888888888887764

>KOG0166|consensus

Probab=90.71  E-value=7.8  Score=37.34  Aligned_cols=145  Identities=14%  Similarity=0.170  Sum_probs=82.9

Q ss_pred             HHHHHhhhcCCChhHHhhHHHHHHhhcCCCc--------HHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhh--cCCcc
Q psy16364         16 RDLIMQCLDDKDESIRLRALDLLYGMVSKKT--------LMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ--NNYQY   85 (276)
Q Consensus        16 ~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n--------~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~--~~y~~   85 (276)
                      .+..+..+...|+.-+..+..-+..+.+.+.        ...+||.|+..|...+....+-+..-.+..+++.  ..++-
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~  147 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV  147 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence            5566777888888889999888888765432        2347899999998766557777766666666542  12222


Q ss_pred             CCChhhHHHHHHHHHHhcCCcchHHHHHHHHH----HHHHhhhhHHHHHH--HHHHhhcCCCCCCCCCCchhhhhhHHhh
Q psy16364         86 ITNFEWYMTVLVELTRMEGTRHGALVAAQMMD----VAIRVSAVRAFAVA--QMSSLLASPSPPLSQPSSRMAEMMFDEY  159 (276)
Q Consensus        86 ~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~----vi~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~~~~~~~L~~~~  159 (276)
                      +.++.- +..+++++.-+    ...+.++-..    ++...|..|++...  .+..++.-.+.    .  ..-..++.+.
T Consensus       148 vv~aga-vp~fi~Ll~s~----~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~----~--~~~~~lRn~t  216 (514)
T KOG0166|consen  148 VVDAGA-VPIFIQLLSSP----SADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNK----S--DKLSMLRNAT  216 (514)
T ss_pred             cccCCc-hHHHHHHhcCC----cHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcc----c--cchHHHHHHH
Confidence            222221 22344544432    2455555443    33445666666443  22233322111    0  0124678888


Q ss_pred             hccccchhhhccccCCCc
Q psy16364        160 SDRSSKIFNIKFSSRMPN  177 (276)
Q Consensus       160 ~~~~~~~ilGef~~~~~~  177 (276)
                            |.+..++..+.+
T Consensus       217 ------W~LsNlcrgk~P  228 (514)
T KOG0166|consen  217 ------WTLSNLCRGKNP  228 (514)
T ss_pred             ------HHHHHHHcCCCC
Confidence                  999888766643

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=90.44  E-value=13  Score=33.67  Aligned_cols=34  Identities=32%  Similarity=0.423  Sum_probs=31.0

Q ss_pred             hhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364         10 KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS   43 (276)
Q Consensus        10 ~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~   43 (276)
                      .++++|...|.++|+.....+...+|.|+-+|+.
T Consensus        52 ~iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~   85 (330)
T PF11707_consen   52 SILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVS   85 (330)
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHc
Confidence            4567899999999999999999999999999997

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=90.35  E-value=0.54  Score=29.11  Aligned_cols=39  Identities=33%  Similarity=0.518  Sum_probs=32.3

Q ss_pred             HHHHHhhhCccch--HHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy16364        186 AMSKILKTHPKSV--QSHRDLIMQCLDDKDESIRLRALDLL  224 (276)
Q Consensus       186 ~l~~l~~~~~~~~--~~~~~~i~~~l~~~D~~iq~ralell  224 (276)
                      ++..++..+|...  +..+..|...|.|+++++|.-|+|++
T Consensus         2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll   42 (42)
T PF12765_consen    2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL   42 (42)
T ss_pred             hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence            4557778888765  46789999999999999999999974

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=90.12  E-value=21  Score=35.33  Aligned_cols=224  Identities=15%  Similarity=0.154  Sum_probs=116.7

Q ss_pred             HHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC-CcHH--HHHHHHHHhhhhcCCchhHH---HHHHHHHHHhhhcCCc-
Q psy16364         12 VQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK-KTLM--EIVKKLMVHMDKAEGTMYRD---ELLSKVIDICSQNNYQ-   84 (276)
Q Consensus        12 v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~-~n~~--~iv~~L~~~L~~~~~~~~r~---~li~~I~~~~~~~~y~-   84 (276)
                      +...+..|+..|+++.+.+|.+|+++.-.++.- +++.  ....+|=..|...-+++|.+   .++.+|+.+.+.-.++ 
T Consensus       602 l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         602 LSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             hHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence            356688899999999999999999998877531 2221  22233333333333333332   2444444443332332 


Q ss_pred             cCCChhhHHHHHHHHHH---------------h----cCCcchHHHH----HHHHHHHHH-hhhhHHHHHHHHHHhhcCC
Q psy16364         85 YITNFEWYMTVLVELTR---------------M----EGTRHGALVA----AQMMDVAIR-VSAVRAFAVAQMSSLLASP  140 (276)
Q Consensus        85 ~~~~~~W~v~~ll~ll~---------------~----~~~~~~~~i~----~~l~~vi~~-~~~~~~~~~~~~~~ll~~~  140 (276)
                      .-||..=....+.-+++               .    ++.+.+..-|    -.+++.+.. ..++|..|++.+.-+-+.+
T Consensus       682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai  761 (975)
T COG5181         682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI  761 (975)
T ss_pred             cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence            11222222222222221               1    2234444333    445566543 3456666665544332222


Q ss_pred             CCCCCCCCchhhhhhHHhh------------hccccchhhhccccCC-------------CchHHHHHHHHHHHHhhhCc
Q psy16364        141 SPPLSQPSSRMAEMMFDEY------------SDRSSKIFNIKFSSRM-------------PNHMKYLGLLAMSKILKTHP  195 (276)
Q Consensus       141 ~~~~~~~~~~~~~~L~~~~------------~~~~~~~ilGef~~~~-------------~~n~ryl~L~~l~~l~~~~~  195 (276)
                          +.     +++|....            -.++++.|.|||+...             +.|..-=.|.++..+.+.-.
T Consensus       762 ----GP-----qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig  832 (975)
T COG5181         762 ----GP-----QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIG  832 (975)
T ss_pred             ----CH-----HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHH
Confidence                10     22332221            1345778888886322             12333334566666655433


Q ss_pred             c----chHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHh
Q psy16364        196 K----SVQSHRDLIMQCLDDKDESIRLRALDLLYGM---VSKKTLMEIVKKLMVHM  244 (276)
Q Consensus       196 ~----~~~~~~~~i~~~l~~~D~~iq~ralell~~l---~~~~n~~~iv~~l~~~l  244 (276)
                      .    .+--.-..+.+.|.|.|..=||-|..++--+   |...-.++..=+|++-|
T Consensus       833 ~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNll  888 (975)
T COG5181         833 QASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLL  888 (975)
T ss_pred             HHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHh
Confidence            3    3334456677788899999999999987333   34445555555666555

>KOG1242|consensus

Probab=89.94  E-value=20  Score=34.94  Aligned_cols=70  Identities=13%  Similarity=0.183  Sum_probs=53.7

Q ss_pred             chHHHHHHHHHHhcCCCHHHHHHHHHHH---HhcC-CcchHHHHHHHHHHHhhhc--C-CchHHHHHHHHHHHHhcc
Q psy16364        197 SVQSHRDLIMQCLDDKDESIRLRALDLL---YGMV-SKKTLMEIVKKLMVHMDKA--E-GTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       197 ~~~~~~~~i~~~l~~~D~~iq~ralell---~~l~-~~~n~~~iv~~l~~~l~~~--~-~~~~~~~l~~~i~~~~~~  266 (276)
                      .+.-....+..-|.+++.+++|.+....   +.++ ++..+.+..++|++-|...  + .++-|......++.+-|+
T Consensus       369 sLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~  445 (569)
T KOG1242|consen  369 SLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLER  445 (569)
T ss_pred             hHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence            3444555566788899999999988776   5666 8899999999999999763  2 258888888877777665

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=89.37  E-value=4.2  Score=28.53  Aligned_cols=57  Identities=16%  Similarity=0.188  Sum_probs=38.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCCchHHHHHHHHH
Q psy16364        200 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKV  260 (276)
Q Consensus       200 ~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i  260 (276)
                      +..+.+...++|+|..+|+.|..-+-.+-    -...++.|.+.+...++...|...+..+
T Consensus        31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----~~~~~~~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   31 EAIPALIELLKDEDPMVRRAAARALGRIG----DPEAIPALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence            44666778889999999999999996552    2445666666666655434466655543

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=89.17  E-value=18  Score=33.14  Aligned_cols=211  Identities=14%  Similarity=0.212  Sum_probs=113.3

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC--c-----H-------HHHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKK--T-----L-------MEIVKKLMVHMDKAEGTMYRDELLSKVIDICS   79 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~--n-----~-------~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~   79 (276)
                      +....++.+|..=|...|+.+..+...+...+  +     +       .+++..|++.....+- .   .-.+.|+.-|.
T Consensus        76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~di-a---l~~g~mlRec~  151 (335)
T PF08569_consen   76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDI-A---LNCGDMLRECI  151 (335)
T ss_dssp             THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTT-H---HHHHHHHHHHT
T ss_pred             CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccc-c---chHHHHHHHHH
Confidence            45666788888889999998888888876431  1     1       2222223332222221 0   11222332232


Q ss_pred             hcC----CccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHH--------HHHHHhhcCCCCCCCCC
Q psy16364         80 QNN----YQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAV--------AQMSSLLASPSPPLSQP  147 (276)
Q Consensus        80 ~~~----y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~--------~~~~~ll~~~~~~~~~~  147 (276)
                      +.+    |-.-.+..|-   +.+....+.-++..+....+.+++.+++++-.+-.        ..+..+++..+.     
T Consensus       152 k~e~l~~~iL~~~~f~~---ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NY-----  223 (335)
T PF08569_consen  152 KHESLAKIILYSECFWK---FFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNY-----  223 (335)
T ss_dssp             TSHHHHHHHHTSGGGGG---HHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSH-----
T ss_pred             hhHHHHHHHhCcHHHHH---HHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCe-----
Confidence            100    1112344454   34444444445567778888999988876533211        222233333211     


Q ss_pred             CchhhhhhHHhhhccccchhhhccccCCCch---HHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy16364        148 SSRMAEMMFDEYSDRSSKIFNIKFSSRMPNH---MKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLL  224 (276)
Q Consensus       148 ~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n---~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell  224 (276)
                           =+-+++.      -.+||++....+.   .||++              -+++...++..|+|+.-.||--|....
T Consensus       224 -----vtkrqsl------kLL~ellldr~n~~vm~~yi~--------------~~~nLkl~M~lL~d~sk~Iq~eAFhvF  278 (335)
T PF08569_consen  224 -----VTKRQSL------KLLGELLLDRSNFNVMTRYIS--------------SPENLKLMMNLLRDKSKNIQFEAFHVF  278 (335)
T ss_dssp             -----HHHHHHH------HHHHHHHHSGGGHHHHHHHTT---------------HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred             -----EeehhhH------HHHHHHHHchhHHHHHHHHHC--------------CHHHHHHHHHHhcCcchhhhHHHHHHH
Confidence                 1234454      7788887666652   24444              356778899999999999999999997


Q ss_pred             -HhcCCcchHHHHHH-------HHHHHhhh----c-CCchHHHH---HHHHHH
Q psy16364        225 -YGMVSKKTLMEIVK-------KLMVHMDK----A-EGTMYRDE---LLSKVI  261 (276)
Q Consensus       225 -~~l~~~~n~~~iv~-------~l~~~l~~----~-~~~~~~~~---l~~~i~  261 (276)
                       .-.+|++.-.+|++       .|+.||..    . +|+.|.+|   ++..|.
T Consensus       279 KvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~~~~D~qf~~EK~~li~~i~  331 (335)
T PF08569_consen  279 KVFVANPNKPPPIVDILIKNREKLLRFLKDFHTDRTDDEQFEDEKAYLIKQIE  331 (335)
T ss_dssp             HHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT--S-CHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCCCCccccHHHHHHHHHHHHH
Confidence             34467766666665       45666644    2 55677777   555554

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=89.07  E-value=11  Score=31.29  Aligned_cols=126  Identities=13%  Similarity=0.111  Sum_probs=73.7

Q ss_pred             hhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC--CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364          9 PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK--KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI   86 (276)
Q Consensus         9 P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~--~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~   86 (276)
                      ..++|+|.+.|+++.-++|..+|..|++++.-+...  -|-...+|.|+.-... .....|.....-...+.+    +|.
T Consensus         3 s~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts-~~~~ir~~A~~~l~~l~e----K~~   77 (187)
T PF12830_consen    3 SALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETS-PNPSIRSRAYQLLKELHE----KHE   77 (187)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCC-CChHHHHHHHHHHHHHHH----HhH
Confidence            357899999999999999999999999999877665  3556677877754333 333555433333334444    332


Q ss_pred             C-ChhhHH---HHHHHHHH-hcCCcc------hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcC
Q psy16364         87 T-NFEWYM---TVLVELTR-MEGTRH------GALVAAQMMDVAIRVSAVRAFAVAQMSSLLAS  139 (276)
Q Consensus        87 ~-~~~W~v---~~ll~ll~-~~~~~~------~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~  139 (276)
                      . -..-+.   ..-.++-. +.++..      .......+.+++......|......+...+..
T Consensus        78 s~v~~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~~  141 (187)
T PF12830_consen   78 SLVESRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSLLKQFDF  141 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence            1 000111   11111111 112111      34455677777775556666667777766654

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=88.97  E-value=8.8  Score=31.15  Aligned_cols=68  Identities=15%  Similarity=0.132  Sum_probs=51.3

Q ss_pred             hhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC-------cHHHHHHHHHHhhhhcCCchhHHHHHHHHHHH
Q psy16364         10 KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK-------TLMEIVKKLMVHMDKAEGTMYRDELLSKVIDI   77 (276)
Q Consensus        10 ~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~-------n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~   77 (276)
                      ..++.+..+|..+|+++++.-|-.++.|+...+...       +....+..+++.|.+.++...+...+..+..+
T Consensus        21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l   95 (165)
T PF08167_consen   21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRL   95 (165)
T ss_pred             HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999998763       34556777888888776655444444333333

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=88.57  E-value=16  Score=31.97  Aligned_cols=106  Identities=8%  Similarity=0.124  Sum_probs=65.6

Q ss_pred             hccccchhhhccccCCCchHHHHHHHHHHHHhhhCc--cchHHHHHHHHHHhc--CCCHHHHHHHHHHHHhcCCcchHHH
Q psy16364        160 SDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHP--KSVQSHRDLIMQCLD--DKDESIRLRALDLLYGMVSKKTLME  235 (276)
Q Consensus       160 ~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~--~~~~~~~~~i~~~l~--~~D~~iq~ralell~~l~~~~n~~~  235 (276)
                      .+.||.-++|.+++..++..|--++.++..++....  ..++.|...+.+-..  ..|.++|+-++.+|..|+-.++...
T Consensus        51 r~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~  130 (254)
T PF04826_consen   51 RDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHH  130 (254)
T ss_pred             HHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhh
Confidence            445677888888888888888778887777655432  334445555555322  3578899999999988865554343


Q ss_pred             H----HHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        236 I----VKKLMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       236 i----v~~l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      +    +..++.-|...+ ...|.....-+..+++.
T Consensus       131 ~l~~~i~~ll~LL~~G~-~~~k~~vLk~L~nLS~n  164 (254)
T PF04826_consen  131 MLANYIPDLLSLLSSGS-EKTKVQVLKVLVNLSEN  164 (254)
T ss_pred             hHHhhHHHHHHHHHcCC-hHHHHHHHHHHHHhccC
Confidence            3    334443333333 36666666655555554

>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []

Probab=88.11  E-value=2.3  Score=33.73  Aligned_cols=58  Identities=22%  Similarity=0.256  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCCchHHHHHHHHH
Q psy16364        199 QSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKV  260 (276)
Q Consensus       199 ~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i  260 (276)
                      ++..+.+..+|.++|.+||+-|++-++.--++ .+.+--+.|.+=   .++..||+||+.-.
T Consensus        16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~-~l~pY~d~L~~L---ldd~~frdeL~~f~   73 (141)
T PF07539_consen   16 DELYDALLRLLSSRDPEVQKLALDCLLTWKDP-YLTPYKDNLENL---LDDKTFRDELTTFN   73 (141)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-HHHhHHHHHHHH---cCcchHHHHHHhhc
Confidence            35577788899999999999999999654332 333322222221   23457787777644

It is believed to be involved in processing of non-coding RNA [].

>KOG2171|consensus

Probab=87.42  E-value=41  Score=35.34  Aligned_cols=236  Identities=13%  Similarity=0.132  Sum_probs=119.9

Q ss_pred             HHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCChhhH
Q psy16364         13 QSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWY   92 (276)
Q Consensus        13 ~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~~~W~   92 (276)
                      +.+...++.-|-.+|..+|+.|=+.+..+..+.+   +.+.|..++..+.+++.|.-..--..+++.+ -|.-. +..-.
T Consensus         3 ~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~-~w~~l-~~e~~   77 (1075)
T KOG2171|consen    3 SAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEP---LLPALAHILATSADPQVRQLAAVLLRKLLTK-HWSRL-SAEVQ   77 (1075)
T ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HhhcC-CHHHH
Confidence            3456677788888999999999999998877666   6677777777776656665433222333332 12212 23322


Q ss_pred             HHHHHHHHHhcCCcchHHH-------------------HHHHHHHHHH-----hhhhHHHHHHHHHHhhcCCCCCCCCCC
Q psy16364         93 MTVLVELTRMEGTRHGALV-------------------AAQMMDVAIR-----VSAVRAFAVAQMSSLLASPSPPLSQPS  148 (276)
Q Consensus        93 v~~ll~ll~~~~~~~~~~i-------------------~~~l~~vi~~-----~~~~~~~~~~~~~~ll~~~~~~~~~~~  148 (276)
                      ...--+++...-......+                   |..+.+.+..     .++.|..+..-++.+   +.+..++..
T Consensus        78 ~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~---~~~~~~~~~  154 (1075)
T KOG2171|consen   78 QSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSL---PETFGNTLQ  154 (1075)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhh---hhhhccccc
Confidence            2222222222111111122                   2222222221     123343333222211   112222111


Q ss_pred             chhhhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCc----------cchHHHHHHHHHHhcCCCHHHHH
Q psy16364        149 SRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHP----------KSVQSHRDLIMQCLDDKDESIRL  218 (276)
Q Consensus       149 ~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~----------~~~~~~~~~i~~~l~~~D~~iq~  218 (276)
                          ..+....      .++.+=+...+.++|..++.++..++...+          ..+|......-+++++.|..--+
T Consensus       155 ----~~~~~l~------~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~  224 (1075)
T KOG2171|consen  155 ----PHLDDLL------RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAK  224 (1075)
T ss_pred             ----hhHHHHH------HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHH
Confidence                1111111      112222233444589888888888776652          23444445555566778887778


Q ss_pred             HHHHHHHhc--CCcchHHHHHHHHHHHhhh-c----CCchHHHHHHHHHHHHhcc
Q psy16364        219 RALDLLYGM--VSKKTLMEIVKKLMVHMDK-A----EGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       219 ralell~~l--~~~~n~~~iv~~l~~~l~~-~----~~~~~~~~l~~~i~~~~~~  266 (276)
                      -++|.+-.+  ..+.=+++.+..++++-.. +    -+...|.--+.-|+.++|.
T Consensus       225 ~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~  279 (1075)
T KOG2171|consen  225 SALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY  279 (1075)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence            888887444  3455666666666665432 1    1236666666666655553

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=87.39  E-value=5.6  Score=31.66  Aligned_cols=36  Identities=31%  Similarity=0.430  Sum_probs=29.5

Q ss_pred             ChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364          8 HPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS   43 (276)
Q Consensus         8 ~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~   43 (276)
                      .+.-..+-...|.+-|.++++-+..+||.|+-.++.
T Consensus        31 ~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vk   66 (144)
T cd03568          31 DENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAE   66 (144)
T ss_pred             CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            344445667778888999999999999999999985

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=86.63  E-value=1.6  Score=30.78  Aligned_cols=41  Identities=22%  Similarity=0.277  Sum_probs=30.8

Q ss_pred             HHHHHhhh-cCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhh
Q psy16364         16 RDLIMQCL-DDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK   60 (276)
Q Consensus        16 ~~~I~~~L-~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~   60 (276)
                      ++.+++.| +|+|+.+|..|+..+..+-++    ..++.|...+..
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~----~~~~~L~~~l~d   42 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGDP----EAIPALIELLKD   42 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH----HHHHHHHHHHTS
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH----hHHHHHHHHHcC
Confidence            35677878 899999999999999965433    566777776643

>KOG2259|consensus

Probab=86.33  E-value=38  Score=33.79  Aligned_cols=90  Identities=12%  Similarity=0.190  Sum_probs=64.7

Q ss_pred             hhhhccccCCCc---hHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc-hHHHHHHHHH
Q psy16364        166 IFNIKFSSRMPN---HMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK-TLMEIVKKLM  241 (276)
Q Consensus       166 ~ilGef~~~~~~---n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~-n~~~iv~~l~  241 (276)
                      ..+|-|.+..++   ..|--+..++.+|+...|++..+-.+.+++-++|.+..+|-+|+-.+..+.+.- --++.++.++
T Consensus       373 GACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il  452 (823)
T KOG2259|consen  373 GACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQIL  452 (823)
T ss_pred             cccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHH
Confidence            346777666665   356677889999999999999999999999999999999999999986664431 1233444445


Q ss_pred             HHhhhcCCchHHHHH
Q psy16364        242 VHMDKAEGTMYRDEL  256 (276)
Q Consensus       242 ~~l~~~~~~~~~~~l  256 (276)
                      .-|.-+. .+.|+.+
T Consensus       453 ~~L~D~s-~dvRe~l  466 (823)
T KOG2259|consen  453 ESLEDRS-VDVREAL  466 (823)
T ss_pred             HHHHhcC-HHHHHHH
Confidence            5554444 2555543

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=86.33  E-value=3.4  Score=30.43  Aligned_cols=32  Identities=22%  Similarity=0.195  Sum_probs=28.8

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKK   45 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~   45 (276)
                      ...+.+.++|+|+|+.++..|+..+..++...
T Consensus        49 ~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020          49 GGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             CChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            66788999999999999999999999998654

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=86.31  E-value=36  Score=33.51  Aligned_cols=202  Identities=14%  Similarity=0.189  Sum_probs=101.1

Q ss_pred             ccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC----cHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy16364          4 ILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK----TLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICS   79 (276)
Q Consensus         4 i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~----n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~   79 (276)
                      ++..+|++..+.++.+-.-|.|+-.+|-..|...++++..+.    -+...|..|..+|+....              +.
T Consensus       254 ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv--------------~~  319 (898)
T COG5240         254 LLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRV--------------VL  319 (898)
T ss_pred             HHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchH--------------HH
Confidence            456778888888888888888887888888888887765432    244455555444432211              11


Q ss_pred             hcCCccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHh
Q psy16364         80 QNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIR-VSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDE  158 (276)
Q Consensus        80 ~~~y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~  158 (276)
                          +|.     -.-.+-++....+..+ ......+-+++.. +.++..||+.   .++....          .+..-..
T Consensus       320 ----rFs-----A~Riln~lam~~P~kv-~vcN~evEsLIsd~Nr~IstyAIT---tLLKTGt----------~e~idrL  376 (898)
T COG5240         320 ----RFS-----AMRILNQLAMKYPQKV-SVCNKEVESLISDENRTISTYAIT---TLLKTGT----------EETIDRL  376 (898)
T ss_pred             ----HHH-----HHHHHHHHHhhCCcee-eecChhHHHHhhcccccchHHHHH---HHHHcCc----------hhhHHHH
Confidence                111     0112222222222111 0011122222221 1123444443   3333321          2333333


Q ss_pred             hhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCC--cchHHH
Q psy16364        159 YSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLD-DKDESIRLRALDLLYGMVS--KKTLME  235 (276)
Q Consensus       159 ~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~-~~D~~iq~ralell~~l~~--~~n~~~  235 (276)
                      +      ..+-.|.+...++-|.++.+++-.|...+|.--..+...+.+.|. ...-+-++-+.|-+..+..  ++.-+.
T Consensus       377 v------~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr  450 (898)
T COG5240         377 V------NLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER  450 (898)
T ss_pred             H------HHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH
Confidence            4      566777788788888888887777777666544444444444332 3444555555555444432  334444


Q ss_pred             HHHHHHHHhhhcC
Q psy16364        236 IVKKLMVHMDKAE  248 (276)
Q Consensus       236 iv~~l~~~l~~~~  248 (276)
                      ++..|-.|++-|+
T Consensus       451 aLe~LC~fIEDce  463 (898)
T COG5240         451 ALEVLCTFIEDCE  463 (898)
T ss_pred             HHHHHHHHHhhcc
Confidence            5555555555444

>KOG2025|consensus

Probab=86.07  E-value=40  Score=33.89  Aligned_cols=61  Identities=18%  Similarity=0.305  Sum_probs=41.5

Q ss_pred             hhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC------cHHHHHHHHHHhhhhcCCchhHHHHH
Q psy16364         10 KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK------TLMEIVKKLMVHMDKAEGTMYRDELL   71 (276)
Q Consensus        10 ~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~------n~~~iv~~L~~~L~~~~~~~~r~~li   71 (276)
                      ++|+...-++++..+.+|-.||.+.+.++--+.+..      -+..+..+|...+....+ ..|.+.+
T Consensus        81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep-~VRiqAv  147 (892)
T KOG2025|consen   81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREP-NVRIQAV  147 (892)
T ss_pred             hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCc-hHHHHHH
Confidence            578888999999999999999999999998887621      123344444444444443 4554433

>KOG1967|consensus

Probab=85.60  E-value=21  Score=36.75  Aligned_cols=45  Identities=20%  Similarity=0.269  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHhhhCc-----cchHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy16364        179 MKYLGLLAMSKILKTHP-----KSVQSHRDLIMQCLDDKDESIRLRALDL  223 (276)
Q Consensus       179 ~ryl~L~~l~~l~~~~~-----~~~~~~~~~i~~~l~~~D~~iq~ralel  223 (276)
                      .|..+|.+|..+..+-|     ..+++....+..+|+|+---+|+-|.+-
T Consensus       969 VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  969 VREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             HHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence            57778888888877544     3456666677778999888888888753

>COG1460 Uncharacterized protein conserved in archaea [Function unknown]

Probab=85.16  E-value=5.1  Score=30.45  Aligned_cols=63  Identities=13%  Similarity=0.281  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHhcC-CCHHHHHHHHHHH--HhcCCcchHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        198 VQSHRDLIMQCLDD-KDESIRLRALDLL--YGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       198 ~~~~~~~i~~~l~~-~D~~iq~ralell--~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      ++.....+.+.-++ .-...|++|+|++  |+-++++-.+..|++|+.-..      +++.++.||.++|=.
T Consensus        15 i~Eak~il~~~~~~~eL~y~~~~al~y~~kFakldpe~a~e~veEL~~i~~------~~e~~avkIadI~P~   80 (114)
T COG1460          15 ISEAKKILSKVEREEELTYEQREALEYAEKFAKLDPEKARELVEELLSIVK------MSEKIAVKIADIMPR   80 (114)
T ss_pred             HHHHHHHHHHhcccccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc------ccHHHHHHHHHhCCC
Confidence            44444544444334 3347899999998  777899999999999987632      567888888887754

>KOG4224|consensus

Probab=84.61  E-value=15  Score=33.92  Aligned_cols=86  Identities=12%  Similarity=0.083  Sum_probs=55.6

Q ss_pred             HHhhhcCCChhHHhhHHHHHHhhcC-CCcHHHH-----HHHHHHhhhhcCCchhHHHHHHHHHHHhhh--cCCccCCChh
Q psy16364         19 IMQCLDDKDESIRLRALDLLYGMVS-KKTLMEI-----VKKLMVHMDKAEGTMYRDELLSKVIDICSQ--NNYQYITNFE   90 (276)
Q Consensus        19 I~~~L~d~D~sIr~~aL~Ll~~l~~-~~n~~~i-----v~~L~~~L~~~~~~~~r~~li~~I~~~~~~--~~y~~~~~~~   90 (276)
                      +.++=+.+|..+++-|...+.+|.. .+|-+.+     +|.|+..++..+. +.|....+.|..++-.  .--..+..-|
T Consensus       172 ltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~-dvqyycttaisnIaVd~~~Rk~Laqaep  250 (550)
T KOG4224|consen  172 LTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDL-DVQYYCTTAISNIAVDRRARKILAQAEP  250 (550)
T ss_pred             hHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCCh-hHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence            3445567899999999999999986 3565554     4677777776654 5565555555544310  0013344556


Q ss_pred             hHHHHHHHHHHhcCC
Q psy16364         91 WYMTVLVELTRMEGT  105 (276)
Q Consensus        91 W~v~~ll~ll~~~~~  105 (276)
                      -++..+++++..+.+
T Consensus       251 ~lv~~Lv~Lmd~~s~  265 (550)
T KOG4224|consen  251 KLVPALVDLMDDGSD  265 (550)
T ss_pred             chHHHHHHHHhCCCh
Confidence            778888888776543

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=84.55  E-value=1.7  Score=33.68  Aligned_cols=42  Identities=14%  Similarity=0.286  Sum_probs=35.7

Q ss_pred             cccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc
Q psy16364          5 LKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT   46 (276)
Q Consensus         5 ~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n   46 (276)
                      ...+|....+..+.+.+.|+++++-|+.++|.+|-.+|...+
T Consensus        29 t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~   70 (122)
T cd03572          29 TRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN   70 (122)
T ss_pred             HHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence            345677778889999999999999999999999999997655

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>KOG1824|consensus

Probab=84.24  E-value=57  Score=34.02  Aligned_cols=93  Identities=15%  Similarity=0.255  Sum_probs=70.1

Q ss_pred             chHHHHHHHHHHHHhhhCccchHHHHHHHHHHh----cCCCHHHHHHHHHHHH---hcCCcchHHHHHHHHHHHhhhcCC
Q psy16364        177 NHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCL----DDKDESIRLRALDLLY---GMVSKKTLMEIVKKLMVHMDKAEG  249 (276)
Q Consensus       177 ~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l----~~~D~~iq~ralell~---~l~~~~n~~~iv~~l~~~l~~~~~  249 (276)
                      ...+...|+.+.-+.....+.++..-..++.|+    .++-..||+||.=.+-   .-++..-...++++|++.|.....
T Consensus       147 sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q  226 (1233)
T KOG1824|consen  147 SAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQ  226 (1233)
T ss_pred             hhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCc
Confidence            457888899898888888887776555555555    5788899999987763   336788889999999999988765


Q ss_pred             chHHHHHHHHHHHHhccCCc
Q psy16364        250 TMYRDELLSKVIDICSQNNY  269 (276)
Q Consensus       250 ~~~~~~l~~~i~~~~~~~~y  269 (276)
                      ..--+..+.-+..+|....|
T Consensus       227 ~~~~rt~Iq~l~~i~r~ag~  246 (1233)
T KOG1824|consen  227 MSATRTYIQCLAAICRQAGH  246 (1233)
T ss_pred             hHHHHHHHHHHHHHHHHhcc
Confidence            55566666777777766544

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=83.73  E-value=33  Score=31.85  Aligned_cols=61  Identities=16%  Similarity=0.207  Sum_probs=40.5

Q ss_pred             CCchHHHHHHHHHHHHhhhCccchHH--HHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHH
Q psy16364        175 MPNHMKYLGLLAMSKILKTHPKSVQS--HRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLME  235 (276)
Q Consensus       175 ~~~n~ryl~L~~l~~l~~~~~~~~~~--~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~  235 (276)
                      .+++.|.+.+.++..++-.+|+.+..  -...+.+.+-|+..++..-.+..+..+.|.++.+.
T Consensus       120 ~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~  182 (371)
T PF14664_consen  120 EDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK  182 (371)
T ss_pred             CchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence            67778888888888888888876532  24556666665555566666666656666555443

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=83.10  E-value=11  Score=29.86  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=31.3

Q ss_pred             ccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364          6 KTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS   43 (276)
Q Consensus         6 ~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~   43 (276)
                      ...|....+-...|.+-|+++++-+...||.|+-+++.
T Consensus        30 n~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vk   67 (139)
T cd03567          30 NKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMK   67 (139)
T ss_pred             HcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            34555556667778888999999999999999999984

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain

Probab=82.49  E-value=6.9  Score=29.80  Aligned_cols=37  Identities=22%  Similarity=0.239  Sum_probs=29.6

Q ss_pred             hhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC
Q psy16364          9 PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK   45 (276)
Q Consensus         9 P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~   45 (276)
                      |++-+=-++.+++.|.|+++.|+..|++++++.|..+
T Consensus         3 ~~f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~   39 (115)
T PF14663_consen    3 PDFEDWGIELLVTQLYDPSPEVVAAALEILEEACEDK   39 (115)
T ss_pred             cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence            3333334566889999999999999999999998765

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=81.85  E-value=56  Score=32.27  Aligned_cols=39  Identities=21%  Similarity=0.342  Sum_probs=33.5

Q ss_pred             cccChh---hHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364          5 LKTHPK---SVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS   43 (276)
Q Consensus         5 ~~~~P~---~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~   43 (276)
                      .+..|+   +|+...-++++.++.+|-.||.+.+.++--+.+
T Consensus        79 ~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d  120 (885)
T COG5218          79 MPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSD  120 (885)
T ss_pred             CCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHH
Confidence            345665   788999999999999999999999999987764

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=81.79  E-value=46  Score=31.19  Aligned_cols=205  Identities=19%  Similarity=0.259  Sum_probs=109.7

Q ss_pred             HHHHhhhcCCCh---hHHhhHHHHHHhhcCCCc-HHHHHHHHHHhhhhcC----CchhHHHHHHHHHHHhhhcCCcc-CC
Q psy16364         17 DLIMQCLDDKDE---SIRLRALDLLYGMVSKKT-LMEIVKKLMVHMDKAE----GTMYRDELLSKVIDICSQNNYQY-IT   87 (276)
Q Consensus        17 ~~I~~~L~d~D~---sIr~~aL~Ll~~l~~~~n-~~~iv~~L~~~L~~~~----~~~~r~~li~~I~~~~~~~~y~~-~~   87 (276)
                      +.++..|.|.+.   .-..+.|+.+.++|.... ++.+++.+++.+....    ..+|-..++..+..+.+...-.. ..
T Consensus         2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~   81 (415)
T PF12460_consen    2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFE   81 (415)
T ss_pred             chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccc
Confidence            456778888776   788999999999997655 6778888888876532    34666677777776655432233 45


Q ss_pred             ChhhHHH--HHHHHHHhc----CCcch--HHHHHHHHHH---HHHh--hhhHHHHHHHHHHhhcCCCCCCCCCCchhhhh
Q psy16364         88 NFEWYMT--VLVELTRME----GTRHG--ALVAAQMMDV---AIRV--SAVRAFAVAQMSSLLASPSPPLSQPSSRMAEM  154 (276)
Q Consensus        88 ~~~W~v~--~ll~ll~~~----~~~~~--~~i~~~l~~v---i~~~--~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~  154 (276)
                      +..||..  .+-+++...    +...+  ..+.+.+-++   +.+.  ++.++..++.+..+|-.......         
T Consensus        82 ~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~---------  152 (415)
T PF12460_consen   82 DNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSP---------  152 (415)
T ss_pred             hHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCC---------
Confidence            7789876  555555442    11111  2333333333   3222  23444455555555431110000         


Q ss_pred             hHHhhhccccchhhhccccCC-CchHHHHHHHHHHHHhhhCccch----HHHH-HHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy16364        155 MFDEYSDRSSKIFNIKFSSRM-PNHMKYLGLLAMSKILKTHPKSV----QSHR-DLIMQCLDDKDESIRLRALDLLYGMV  228 (276)
Q Consensus       155 L~~~~~~~~~~~ilGef~~~~-~~n~ryl~L~~l~~l~~~~~~~~----~~~~-~~i~~~l~~~D~~iq~ralell~~l~  228 (276)
                                   ++-..... +.+.+++.+.+ .-+...+++..    .+.. ..+--++...|...|.-++..+..++
T Consensus       153 -------------~~~~~~~~~~~~~~~~~l~~-~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~Lv  218 (415)
T PF12460_consen  153 -------------FQPSSSTISEQQSRLVILFS-AILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLV  218 (415)
T ss_pred             -------------CCccccccccccccHHHHHH-HHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence                         00000000 12344444322 22333333222    1222 22333456677888888888888888


Q ss_pred             Cc----chHHHHHHHHHHHh
Q psy16364        229 SK----KTLMEIVKKLMVHM  244 (276)
Q Consensus       229 ~~----~n~~~iv~~l~~~l  244 (276)
                      |+    +.+..+++.+...+
T Consensus       219 NK~~~~~~l~~~l~~~~~~~  238 (415)
T PF12460_consen  219 NKWPDDDDLDEFLDSLLQSI  238 (415)
T ss_pred             cCCCChhhHHHHHHHHHhhh
Confidence            87    22555555555555

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []

Probab=81.71  E-value=6.5  Score=31.20  Aligned_cols=65  Identities=25%  Similarity=0.312  Sum_probs=43.1

Q ss_pred             cChhhHH---HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Q psy16364          7 THPKSVQ---SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVI   75 (276)
Q Consensus         7 ~~P~~v~---~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~   75 (276)
                      ++|..+.   +..+.+.++|.++|+.|.+.||+.++.-=++ .+..--..|.+-   .++..||+|+..-..
T Consensus         7 ~npk~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~-~l~pY~d~L~~L---ldd~~frdeL~~f~~   74 (141)
T PF07539_consen    7 KNPKSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTWKDP-YLTPYKDNLENL---LDDKTFRDELTTFNL   74 (141)
T ss_pred             CCcHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-HHHhHHHHHHHH---cCcchHHHHHHhhcc
Confidence            5677663   6777889999999999999999999975432 222222222221   244588888775443

It is believed to be involved in processing of non-coding RNA [].

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=81.59  E-value=14  Score=29.29  Aligned_cols=35  Identities=23%  Similarity=0.155  Sum_probs=28.2

Q ss_pred             hhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364          9 PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS   43 (276)
Q Consensus         9 P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~   43 (276)
                      +.--.+-...|.+-|.++++.+...||.|+-.++.
T Consensus        36 ~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vk   70 (142)
T cd03569          36 DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVK   70 (142)
T ss_pred             CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence            33344566677788899999999999999999985

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=81.43  E-value=3.6  Score=31.70  Aligned_cols=48  Identities=17%  Similarity=0.232  Sum_probs=31.6

Q ss_pred             hhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy16364        166 IFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGM  227 (276)
Q Consensus       166 ~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l  227 (276)
                      +=+|+|....+..-+.+.              --+.+..|++.+.++|.++|..|+--+..+
T Consensus        66 ~Dig~~vr~~p~gr~ii~--------------~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl  113 (119)
T PF11698_consen   66 HDIGEFVRHYPNGRNIIE--------------KLGAKERVMELMNHEDPEVRYEALLAVQKL  113 (119)
T ss_dssp             HHHHHHHHH-GGGHHHHH--------------HHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHChhHHHHHH--------------hcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            667888766544333221              123567789999999999999999877544

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=80.59  E-value=51  Score=30.95  Aligned_cols=200  Identities=12%  Similarity=0.108  Sum_probs=100.0

Q ss_pred             HHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC-CcH-----HHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364         13 QSHRDLIMQCLDDKDESIRLRALDLLYGMVSK-KTL-----MEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI   86 (276)
Q Consensus        13 ~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~-~n~-----~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~   86 (276)
                      +.++..++.+++.+|+.=|...-+++..+..+ .+.     ..+...+.+++.......--.+++.-..++..    .|.
T Consensus       132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~----gf~  207 (409)
T PF01603_consen  132 QKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIIN----GFA  207 (409)
T ss_dssp             HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHT----T--
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHh----ccC
Confidence            48888999999999999999999998887653 122     23444444444433221111223322223332    333


Q ss_pred             CCh-hhHHHHHHHH-HHhcCC----cchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhh
Q psy16364         87 TNF-EWYMTVLVEL-TRMEGT----RHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYS  160 (276)
Q Consensus        87 ~~~-~W~v~~ll~l-l~~~~~----~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~  160 (276)
                      .|- +=....+.+. +.+-..    .....+...+...+.+.|++....+..+...-...+        +..+++.-   
T Consensus       208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~--------s~Kev~FL---  276 (409)
T PF01603_consen  208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTN--------SQKEVLFL---  276 (409)
T ss_dssp             SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS---------HHHHHHHH---
T ss_pred             CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCC--------chhHHHHH---
Confidence            221 1122222222 111111    113555666666666666666655555555443211        11233210   


Q ss_pred             ccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHH-----HhcCCcchHHH
Q psy16364        161 DRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLL-----YGMVSKKTLME  235 (276)
Q Consensus       161 ~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell-----~~l~~~~n~~~  235 (276)
                           ..+++-+...++ ..+             .......-..+-.|++++...+-.||+.+.     ..+. .+|.+.
T Consensus       277 -----~el~~il~~~~~-~~f-------------~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li-~~~~~~  336 (409)
T PF01603_consen  277 -----NELEEILEVLPP-EEF-------------QKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLI-SQNSRV  336 (409)
T ss_dssp             -----HHHHHHHTT--H-HHH-------------HHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHH-HCTHHH
T ss_pred             -----HHHHHHHHhcCH-HHH-------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHH-HhChHH
Confidence                 112221111111 111             122334445567799999999999999875     1111 377788


Q ss_pred             HHHHHHHHhhhc
Q psy16364        236 IVKKLMVHMDKA  247 (276)
Q Consensus       236 iv~~l~~~l~~~  247 (276)
                      +++-+.+.|..+
T Consensus       337 i~p~i~~~L~~~  348 (409)
T PF01603_consen  337 ILPIIFPALYRN  348 (409)
T ss_dssp             HHHHHHHHHSST
T ss_pred             HHHHHHHHHHHH
Confidence            888888888663

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	276
2jkr_A	623	Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm		4e-07
2jkr_A	623	Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm		3e-04
2vgl_A	621	Ap2 Clathrin Adaptor Core Length = 621		4e-07
2vgl_A	621	Ap2 Clathrin Adaptor Core Length = 621		3e-04
1w63_A	618	Ap1 Clathrin Adaptor Core Length = 618		1e-06

>pdb|2JKR|A Chain A, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm( Phosphos)qikrllse Length = 623

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Query: 10  KSVQSHRDLIMQCL-DDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRD 68
           ++V++H + ++  L  ++D S+R RA+DLLY M  +    +IV +++ +++ A+ ++ R+
Sbjct: 364 EAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSI-RE 422
Query: 69  ELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAF 128
           E++ KV  +      +Y  ++ WY+  ++ L R+ G      V  +++ + I    V+ +
Sbjct: 423 EIVLKVAILAE----KYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGY 478
Query: 129 A 129
           A
Sbjct: 479 A 479

>pdb|2JKR|A Chain A, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm( Phosphos)qikrllse Length = 623

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 55/86 (63%), Gaps = 4/86 (4%)
Query: 178 HMKYLGLLAMSKILKTH--PKSVQSHRDLIMQCL-DDKDESIRLRALDLLYGMVSKKTLM 234
           +++YL L +M  +  +    ++V++H + ++  L  ++D S+R RA+DLLY M  +    
Sbjct: 344 NLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQ 403
Query: 235 EIVKKLMVHMDKAEGTMYRDELLSKV 260
           +IV +++ +++ A+ ++ R+E++ KV
Sbjct: 404 QIVAEMLSYLETADYSI-REEIVLKV 428

>pdb|2VGL|A Chain A, Ap2 Clathrin Adaptor Core Length = 621

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Query: 10  KSVQSHRDLIMQCL-DDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRD 68
           ++V++H + ++  L  ++D S+R RA+DLLY M  +    +IV +++ +++ A+ ++ R+
Sbjct: 364 EAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSI-RE 422
Query: 69  ELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAF 128
           E++ KV  +      +Y  ++ WY+  ++ L R+ G      V  +++ + I    V+ +
Sbjct: 423 EIVLKVAILAE----KYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGY 478
Query: 129 A 129
           A
Sbjct: 479 A 479

>pdb|2VGL|A Chain A, Ap2 Clathrin Adaptor Core Length = 621

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 55/86 (63%), Gaps = 4/86 (4%)
Query: 178 HMKYLGLLAMSKILKTH--PKSVQSHRDLIMQCL-DDKDESIRLRALDLLYGMVSKKTLM 234
           +++YL L +M  +  +    ++V++H + ++  L  ++D S+R RA+DLLY M  +    
Sbjct: 344 NLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQ 403
Query: 235 EIVKKLMVHMDKAEGTMYRDELLSKV 260
           +IV +++ +++ A+ ++ R+E++ KV
Sbjct: 404 QIVAEMLSYLETADYSI-REEIVLKV 428

>pdb|1W63|A Chain A, Ap1 Clathrin Adaptor Core Length = 618

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 46/77 (59%)
Query: 178 HMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIV 237
           +++Y+ L ++ K ++T   +VQ HR  I+ CL D D SI+ RA++L + +V+   +  ++
Sbjct: 328 NIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMM 387
Query: 238 KKLMVHMDKAEGTMYRD 254
           K+L+  +D  E     D
Sbjct: 388 KELLYFLDSCEPEFKAD 404

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	4e-33
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	1e-24
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	1e-27
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	6e-20
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	4e-20
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	3e-17
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	7e-11
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	7e-08
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618

 Score =  126 bits (318), Expect = 4e-33
 Identities = 35/185 (18%), Positives = 74/185 (40%), Gaps = 7/185 (3%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
           + K ++T   +VQ HR  I+ CL D D SI+ RA++L + +V+   +  ++K+L+  +D 
Sbjct: 337 LLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDS 396

Query: 61  AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
            E      E  +           +Y  +  W++  ++ +    G+         ++ +  
Sbjct: 397 CE-----PEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLIT 451

Query: 121 RVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMK 180
               + A+ V ++   +        QP  ++A     EY D        +         +
Sbjct: 452 NSVEMHAYTVQRLYKAILGDY--SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDE 509

Query: 181 YLGLL 185
            L +L
Sbjct: 510 VLDIL 514

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618

 Score =  101 bits (254), Expect = 1e-24
 Identities = 44/277 (15%), Positives = 103/277 (37%), Gaps = 22/277 (7%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK-TLMEIVKKLMVHMD 59
              +++  P+ ++         L++K+  +   ++ LL  M  +   ++   +KL+  + 
Sbjct: 166 AVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLV 225

Query: 60  KAEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVA 119
           +         L + ++   S  +     +  +    ++ L R+ G        A    +A
Sbjct: 226 RI--------LKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILA 277

Query: 120 IRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHM 179
              +          + L  +    +   S              +  I      +   N +
Sbjct: 278 QVATNTETSKNVGNAILYETVLTIMDIKSE-------SGLRVLAINILGRFLLNNDKN-I 329

Query: 180 KYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKK 239
           +Y+ L ++ K ++T   +VQ HR  I+ CL D D SI+ RA++L + +V+   +  ++K+
Sbjct: 330 RYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKE 389

Query: 240 LMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFE 276
           L+  +D  E      E  +           +Y  +  
Sbjct: 390 LLYFLDSCE-----PEFKADCASGIFLAAEKYAPSKR 421

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621

 Score =  110 bits (277), Expect = 1e-27
 Identities = 33/146 (22%), Positives = 75/146 (51%), Gaps = 8/146 (5%)

Query: 1   MSKILKTH--PKSVQSHRDLIMQCLD-DKDESIRLRALDLLYGMVSKKTLMEIVKKLMVH 57
           M  +  +    ++V++H + ++  L  ++D S+R RA+DLLY M  +    +IV +++ +
Sbjct: 353 MCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSY 412

Query: 58  MDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMD 117
           ++ A+    R+E++ KV  +      +Y  ++ WY+  ++ L R+ G      V  +++ 
Sbjct: 413 LETAD-YSIREEIVLKVAILA----EKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQ 467

Query: 118 VAIRVSAVRAFAVAQMSSLLASPSPP 143
           + I    V+ +A   +   L +P+  
Sbjct: 468 IVINRDDVQGYAAKTVFEALQAPACH 493

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621

 Score = 88.4 bits (219), Expect = 6e-20
 Identities = 45/285 (15%), Positives = 106/285 (37%), Gaps = 25/285 (8%)

Query: 1   MSKILKTHPKSVQSHR--DLIMQCLDDKDESIRLRALDLLYGMVSK--KTLMEIVKKLMV 56
           + ++ +T P  V        ++  L+D+   +   A  L+  +  K  +     V   + 
Sbjct: 172 LLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVS 231

Query: 57  HMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMM 116
            + +   +   D        + +           W    L+ L +         V  ++ 
Sbjct: 232 RLSRIVTSASTDLQDYTYYFVPA----------PWLSVKLLRLLQCYPPPEDPAVRGRLT 281

Query: 117 DVAIRV--SAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSR 174
           +    +   A       ++    A  +      S  +          R+          R
Sbjct: 282 ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHR 341

Query: 175 MPNHMKYLGLLAMSKILKTH--PKSVQSHRDLIMQCLD-DKDESIRLRALDLLYGMVSKK 231
             N ++YL L +M  +  +    ++V++H + ++  L  ++D S+R RA+DLLY M  + 
Sbjct: 342 ETN-LRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRS 400

Query: 232 TLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFE 276
              +IV +++ +++ A+    R+E++ KV  +      +Y  ++ 
Sbjct: 401 NAQQIVAEMLSYLETAD-YSIREEIVLKVAILA----EKYAVDYT 440

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591

 Score = 88.6 bits (220), Expect = 4e-20
 Identities = 31/230 (13%), Positives = 90/230 (39%), Gaps = 20/230 (8%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
           ++ I++  P+ ++    +     +D    ++L  LD++  + S+  + +++ +L  +  +
Sbjct: 306 INLIVQKRPEILKQEIKVFFVKYND-PIYVKLEKLDIMIRLASQANIAQVLAELKEYATE 364

Query: 61  AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
            +      + + K +    +   +   + E  ++ L++L + +      +V   ++ +  
Sbjct: 365 VD-----VDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKV---NYVVQEAIVVIRD 416

Query: 121 RVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEM-MFDEYSDRSS------KIFNIKFSS 173
                     + +++L  +    L +P +R A + +  EY++R        + F   F  
Sbjct: 417 IFRKYPNKYESIIATLCEN-LDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHD 475

Query: 174 RMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCL--DDKDESIRLRAL 221
                ++   L A+ K+    P   Q     ++     D  +  +R R  
Sbjct: 476 -ESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGY 524

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591

 Score = 80.6 bits (199), Expect = 3e-17
 Identities = 32/283 (11%), Positives = 95/283 (33%), Gaps = 45/283 (15%)

Query: 1   MSKILKTHPKSVQSHR--DLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHM 58
           ++K+   + + V+     D +   + D +  +   A+  L  +        ++     ++
Sbjct: 145 VAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNI 204

Query: 59  DKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDV 118
           +K          L   ++ C+          EW    +++       +     A  + + 
Sbjct: 205 NK----------LLTALNECT----------EWGQIFILDCLSNYNPKDDRE-AQSICER 243

Query: 119 AIRV-----SAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSS 173
                    SAV   AV  +   L          +  +          +      +   S
Sbjct: 244 VTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL----------KKLAPPLVTLLS 293

Query: 174 RMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTL 233
             P  ++Y+ L  ++ I++  P+ ++    +     +D    ++L  LD++  + S+  +
Sbjct: 294 GEPE-VQYVALRNINLIVQKRPEILKQEIKVFFVKYND-PIYVKLEKLDIMIRLASQANI 351

Query: 234 MEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFE 276
            +++ +L  +  + +      + + K +    +   +   + E
Sbjct: 352 AQVLAELKEYATEVD-----VDFVRKAVRAIGRCAIKVEQSAE 389

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 60.1 bits (145), Expect = 7e-11
 Identities = 34/250 (13%), Positives = 81/250 (32%), Gaps = 44/250 (17%)

Query: 17  DLIMQCLDDKDESIRLRALDLL--YGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKV 74
             +++ LDD   ++   A+ ++       +     ++KKL   + K+E      E+    
Sbjct: 35  KKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAK-- 92

Query: 75  IDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMS 134
                                  ++ + +     +++     +  I     +   V+   
Sbjct: 93  --------------------AFGQMAKEKPELVKSMIPVLFANYRIGDEKTKI-NVSYAL 131

Query: 135 SLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTH 194
             +A  +P L     R    M    +                   K   L  +  + +  
Sbjct: 132 EEIAKANPMLMASIVRDFMSMLSSKNRED----------------KLTALNFIEAMGENS 175

Query: 195 PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK-TLMEIVKKLMVHMDKAEGTMYR 253
            K V      I+  L D DE +R  A++ L  + +    L ++V K +  ++     + +
Sbjct: 176 FKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNK 235

Query: 254 D--ELLSKVI 261
              E +S+++
Sbjct: 236 TVKEGISRLL 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 51.2 bits (122), Expect = 7e-08
 Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK-TLMEIVKKLMVHMD 59
           +  + +   K V      I+  L D DE +R  A++ L  + +    L ++V K +  ++
Sbjct: 168 IEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELN 227

Query: 60  KAEGTMYRD--ELLSKVI 75
                + +   E +S+++
Sbjct: 228 DTSSLVNKTVKEGISRLL 245

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355

 Score = 52.0 bits (124), Expect = 6e-08
 Identities = 29/231 (12%), Positives = 69/231 (29%), Gaps = 42/231 (18%)

Query: 1   MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
              +LK     V+   +   +     +  ++  AL LLY          + K   + + K
Sbjct: 163 SLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLY---------HVRKNDRLAVSK 213

Query: 61  AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
                 R  L S                  +   +++ +   +         + + D   
Sbjct: 214 MISKFTRHGLKS-----------------PFAYCMMIRVASRQLEDEDGSRDSPLFDF-- 254

Query: 121 RVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNI--KFSSRMPNH 178
                       + S L +    +   ++     +    +   +   ++   F S     
Sbjct: 255 ------------IESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAA 302

Query: 179 MKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 229
           ++Y  +  ++K+   HP +V +    +   + D + SI   A+  L    S
Sbjct: 303 LRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGS 353

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 41/341 (12%), Positives = 87/341 (25%), Gaps = 135/341 (39%)

Query: 14  SHRDLIMQCLDD--KDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYR--DE 69
            ++D++    D    +   +    D+   ++SK+ +  I+         A     R    
Sbjct: 17  QYKDILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIM-----SKDAVSGTLRLFWT 70

Query: 70  LLSK-------VIDICSQNNYQYI---------------TNFEWYM-------------- 93
           LLSK        ++   + NY+++                 +                  
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 94  -----------TVLVELTRMEG-TRHG-------ALVAAQMMDVAIRVSAVRAFAV---- 130
                        L+EL   +     G        +     +    +V     F +    
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS--YKVQCKMDFKIFWLN 188

Query: 131 -----------AQMSSLLASPSPPLSQPSSRMA--EMMFDEYSDRSSKIFNIKFSSRMPN 177
                        +  LL    P  +  S   +  ++          ++           
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL---------- 238

Query: 178 HMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDD-KDESIRLRALDLLYGMVSKKTLM-- 234
                         K +   +     L+   L + ++      A +L     S K L+  
Sbjct: 239 ------------KSKPYENCL-----LV---LLNVQNAKA-WNAFNL-----SCKILLTT 272

Query: 235 ---EIVKKLM------VHMDKAEGTMYRDE---LLSKVIDI 263
              ++   L       + +D    T+  DE   LL K +D 
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 4e-06
 Identities = 45/334 (13%), Positives = 97/334 (29%), Gaps = 97/334 (29%)

Query: 5   LKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMV-SKKTLM--EIVKKLMVHMDKA 61
           L+     ++  ++++                  + G++ S KT +  ++     V   K 
Sbjct: 140 LRQALLELRPAKNVL------------------IDGVLGSGKTWVALDVCLSYKVQ-CKM 180

Query: 62  EGTMY---------RDELLSKVIDICSQ----------NNYQYITNFEWYMTVLVELTRM 102
           +  ++          + +L  +  +  Q          ++             L  L + 
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 103 EGTRHGALVAAQMMDVAIRVSAVRAF-------------AVAQMSSLLASPSPPLSQPSS 149
           +   +  LV   +++V     A  AF              V    S   +    L   S 
Sbjct: 241 KPYENCLLV---LLNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 150 RMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKI---LKTHP------KSVQS 200
            +     DE      K  + +    +P  +       +S I   ++         K V  
Sbjct: 297 TLTP---DEVKSLLLKYLDCRPQD-LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 201 HR--DLIMQCLD-----------------DKDESIRLRALDLLYGMVSKKTLMEIVKKL- 240
            +   +I   L+                      I    L L++  V K  +M +V KL 
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 241 ---MVHMDKAEGTMYRDELLSKVIDICSQNNYQY 271
              +V     E T+    + S  +++  +   +Y
Sbjct: 413 KYSLVEKQPKESTIS---IPSIYLELKVKLENEY 443

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.93
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.92
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.91
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.87
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.84
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.64
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.37
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	98.51
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	98.18
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.08
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.06
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	98.0
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	97.98
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	97.97
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	97.94
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	97.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	97.89
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	97.86
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.84
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	97.78
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	97.74
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	97.73
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	97.71
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	97.68
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	97.66
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	97.61
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	97.57
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	97.57
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	97.51
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	97.48
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	97.43
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	97.36
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.31
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	97.25
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	97.21
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	97.19
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	97.17
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	97.07
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	96.98
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	96.95
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	96.9
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	96.9
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	96.87
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	96.86
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	96.81
1qgr_A	876	Protein (importin beta subunit); transport recepto	96.77
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	96.74
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	96.71
1qgr_A	876	Protein (importin beta subunit); transport recepto	96.67
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	96.64
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	96.61
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	96.59
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	96.3
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	96.28
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	95.99
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	95.92
3nmz_A	458	APC variant protein; protein-protein complex, arma	95.91
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	95.21
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	94.71
3nmz_A	458	APC variant protein; protein-protein complex, arma	94.5
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	94.47
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	93.64
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	93.61
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	92.94
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	92.36
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	91.39
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	91.27
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	90.57
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	90.15
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	89.77
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	89.0
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	88.44
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	87.2
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	86.67
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	85.7
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	85.41
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	85.09
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	85.05
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	84.76
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	83.83
3s4w_B	1323	Protein FACD2, fanconi anemia group D2 protein hom	83.55
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	82.3
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	80.86
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	80.81

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.93  E-value=7.7e-26  Score=219.85  Aligned_cols=208  Identities=20%  Similarity=0.379  Sum_probs=180.5

Q ss_pred             ccccccCh--hhHHHhHHHHHhhhc-CCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHh
Q psy16364          2 SKILKTHP--KSVQSHRDLIMQCLD-DKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDIC   78 (276)
Q Consensus         2 ~~i~~~~P--~~v~~~~~~I~~~L~-d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~   78 (276)
                      .++...+|  ++++.|.+.++.||. |+|++||++||++++.|++++|+..++++|.+|+..+++ +||.+++.+|..+|
T Consensus       354 ~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~-~~~~~~v~~I~~la  432 (621)
T 2vgl_A          354 CTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADY-SIREEIVLKVAILA  432 (621)
T ss_dssp             HHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHH
T ss_pred             HHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHH
Confidence            35666776  789999999999999 999999999999999999999999999999999998876 99999999999999


Q ss_pred             hhcCCccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHh
Q psy16364         79 SQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDE  158 (276)
Q Consensus        79 ~~~~y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~  158 (276)
                      .    +|++++.|++++++++++..|+++..+++..+++++.+.|+.|.+++..+...++++..        ...+++.+
T Consensus       433 ~----k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~--------~~~li~~~  500 (621)
T 2vgl_A          433 E----KYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPAC--------HENLVKVG  500 (621)
T ss_dssp             H----HHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSC--------CHHHHHHH
T ss_pred             H----hcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccc--------hHHHHHHH
Confidence            8    89999999999999999999999999999999999999999999999999998886542        13567777


Q ss_pred             hhccccchhhhccccCCCc----------------------hHHHHHHHHHHHHhhhCccchHHHHHHHHHHhc--CCCH
Q psy16364        159 YSDRSSKIFNIKFSSRMPN----------------------HMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLD--DKDE  214 (276)
Q Consensus       159 ~~~~~~~~ilGef~~~~~~----------------------n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~--~~D~  214 (276)
                      +      |++|||++..++                      .+|...|+++.|+....|+..+..+..+-.+..  |.|.
T Consensus       501 ~------wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~~~~~i~~~l~~~~~~~~~d~  574 (621)
T 2vgl_A          501 G------YILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADV  574 (621)
T ss_dssp             H------HHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHSSHHHHSCSSH
T ss_pred             H------HHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhcCCCCCH
Confidence            7      999999875432                      234456899999999888877776776666777  9999


Q ss_pred             HHHHHHHHHHHhcCC
Q psy16364        215 SIRLRALDLLYGMVS  229 (276)
Q Consensus       215 ~iq~ralell~~l~~  229 (276)
                      ++|+||.+|. .+.+
T Consensus       575 evrdRA~~y~-~Ll~  588 (621)
T 2vgl_A          575 ELQQRAVEYL-RLST  588 (621)
T ss_dssp             HHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHH-HHHc
Confidence            9999999998 5543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.92  E-value=1.5e-24  Score=210.78  Aligned_cols=214  Identities=16%  Similarity=0.264  Sum_probs=182.6

Q ss_pred             ccccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhc
Q psy16364          2 SKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQN   81 (276)
Q Consensus         2 ~~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~   81 (276)
                      .++.+.+|+++++|.+.++.||.|+|++||++|+++++.|++++|+..++++|.+++...++ +||.+++.+|..+|.  
T Consensus       338 ~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~-e~r~~~v~~I~~la~--  414 (618)
T 1w63_A          338 LKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEP-EFKADCASGIFLAAE--  414 (618)
T ss_dssp             HHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHH--
T ss_pred             HHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHH--
Confidence            35677899999999999999999999999999999999999999999999999999987665 999999999999999  


Q ss_pred             CCccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhc
Q psy16364         82 NYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSD  161 (276)
Q Consensus        82 ~y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~  161 (276)
                        +|++++.|++++++++++..|.++..+++..+.+++.+.|+.+.+++..++..++....        ..++.+.++  
T Consensus       415 --k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~--------~~~~~~~~~--  482 (618)
T 1w63_A          415 --KYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYS--------QQPLVQVAA--  482 (618)
T ss_dssp             --SSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCS--------CSHHHHHHH--
T ss_pred             --HhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccc--------cHHHHHHHH--
Confidence              88899999999999999999888889999999999999999999999999988874211        124556677  


Q ss_pred             cccchhhhccccCC-------------------------------CchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhc
Q psy16364        162 RSSKIFNIKFSSRM-------------------------------PNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLD  210 (276)
Q Consensus       162 ~~~~~ilGef~~~~-------------------------------~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~  210 (276)
                          |++|||++..                               +..+|...++++.|+....|+..+..+..+-.+..
T Consensus       483 ----wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~~~~l~~~L~~~~~  558 (618)
T 1w63_A          483 ----WCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGS  558 (618)
T ss_dssp             ----HHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHTT
T ss_pred             ----HHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHhcC
Confidence                9999998521                               12356667899999999888877777777778889


Q ss_pred             CCCHHHHHHHHHHHHhcCCcchHH
Q psy16364        211 DKDESIRLRALDLLYGMVSKKTLM  234 (276)
Q Consensus       211 ~~D~~iq~ralell~~l~~~~n~~  234 (276)
                      |.|.++|+||.+|+-.+...+.++
T Consensus       559 ~~d~evrdRA~~y~~ll~~~~~~~  582 (618)
T 1w63_A          559 SIDVELQQRAVEYNALFKKYDHMR  582 (618)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTTTHH
T ss_pred             CCCHHHHHHHHHHHHHHcCcHHHH
Confidence            999999999999994444444443

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.91  E-value=2.1e-24  Score=209.73  Aligned_cols=242  Identities=19%  Similarity=0.329  Sum_probs=185.4

Q ss_pred             ccccccChhhHH--HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC--CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHH
Q psy16364          2 SKILKTHPKSVQ--SHRDLIMQCLDDKDESIRLRALDLLYGMVSK--KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDI   77 (276)
Q Consensus         2 ~~i~~~~P~~v~--~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~--~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~   77 (276)
                      .|+++.+|+.+.  +|.+.+.++|+|+|++|+..|+.++.+++..  +.+...++.+++.|..             +...
T Consensus       173 ~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~-------------ll~~  239 (621)
T 2vgl_A          173 LRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSR-------------IVTS  239 (621)
T ss_dssp             HHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHH-------------HHHC
T ss_pred             HHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH-------------HHhC
Confidence            578899999999  8999999999999999999999999999853  3455566666655432             1111


Q ss_pred             --hhhcCCcc-CCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhh----------hhHHHHHHHHHHhhcCCCCCC
Q psy16364         78 --CSQNNYQY-ITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVS----------AVRAFAVAQMSSLLASPSPPL  144 (276)
Q Consensus        78 --~~~~~y~~-~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~----------~~~~~~~~~~~~ll~~~~~~~  144 (276)
                        +...+|.| ..+.||.+.++++++...+.....+..+.+.+++.+.-          .++ +.+...+.++++++++.
T Consensus       240 ~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~-~~n~~~aVl~ea~~~i~  318 (621)
T 2vgl_A          240 ASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQ-HSNAKNAVLFEAISLII  318 (621)
T ss_dssp             CSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHH-HHHHHHHHHHHHHHHHH
T ss_pred             CCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccccccc-ccchHHHHHHHHHHHHH
Confidence              21134544 44789999999999988765333556665655544321          111 11222344444443332


Q ss_pred             CCCCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCc--cchHHHHHHHHHHhc-CCCHHHHHHHH
Q psy16364        145 SQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHP--KSVQSHRDLIMQCLD-DKDESIRLRAL  221 (276)
Q Consensus       145 ~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~--~~~~~~~~~i~~~l~-~~D~~iq~ral  221 (276)
                      ...+  .++.+..++      ..+|+|+.+.++|+||++|.++.+++..+|  ..+.+|+..++.||+ |+|.+||++|+
T Consensus       319 ~l~~--~~~~~~~~~------~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL  390 (621)
T 2vgl_A          319 HHDS--EPNLLVRAC------NQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAV  390 (621)
T ss_dssp             HHCC--CHHHHHHHH------HHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHH
T ss_pred             hcCC--cHHHHHHHH------HHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHH
Confidence            1111  246667777      899999999999999999999999999886  678899999999999 99999999999


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        222 DLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       222 ell~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      |+++.|++++|++.|+++|+.|+..+++ +||.+++.+|..+|++
T Consensus       391 ~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~-~~~~~~v~~I~~la~k  434 (621)
T 2vgl_A          391 DLLYAMCDRSNAQQIVAEMLSYLETADY-SIREEIVLKVAILAEK  434 (621)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcChhhHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999885 9999999999999987

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.87  E-value=1.2e-21  Score=190.21  Aligned_cols=232  Identities=19%  Similarity=0.290  Sum_probs=177.5

Q ss_pred             ccccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC-----cHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Q psy16364          2 SKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK-----TLMEIVKKLMVHMDKAEGTMYRDELLSKVID   76 (276)
Q Consensus         2 ~~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~-----n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~   76 (276)
                      .++++.+|+.++.+.+.+.++|+|+|++|+..|+.++..++..+     .+..+++.+++.|...             ..
T Consensus       167 ~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~-------------~~  233 (618)
T 1w63_A          167 VHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNL-------------IM  233 (618)
T ss_dssp             HHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHH-------------HH
T ss_pred             HHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-------------Hc
Confidence            46788899999999999999999999999999999999998653     2344555555544321             10


Q ss_pred             HhhhcCCccC-CChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh-----------hhhHHHHHHHHHHhhcCCCCCC
Q psy16364         77 ICSQNNYQYI-TNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRV-----------SAVRAFAVAQMSSLLASPSPPL  144 (276)
Q Consensus        77 ~~~~~~y~~~-~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~-----------~~~~~~~~~~~~~ll~~~~~~~  144 (276)
                      .-...+|.|. .+.||.+..++++++..+.. ..+..+.+.+++.+.           +++.-.+++.+..+ .      
T Consensus       234 ~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~-~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l-~------  305 (618)
T 1w63_A          234 SGYSPEHDVSGISDPFLQVRILRLLRILGRN-DDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI-K------  305 (618)
T ss_dssp             SCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT-CHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS-C------
T ss_pred             CCCCccccccCCCCChHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc-C------
Confidence            0011244443 57899999999999876654 244444444444332           22333344433321 1      


Q ss_pred             CCCCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy16364        145 SQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLL  224 (276)
Q Consensus       145 ~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell  224 (276)
                         .  .+++...++      ..+++|+.+.++|+||++|.++.+++..+|..+.+|...++.|++|+|.+||++|+|++
T Consensus       306 ---~--~~~l~~~a~------~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL  374 (618)
T 1w63_A          306 ---S--ESGLRVLAI------NILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELS  374 (618)
T ss_dssp             ---C--CHHHHHHHH------HHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHH
T ss_pred             ---C--CHHHHHHHH------HHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHH
Confidence               0  123333455      88999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCcchHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        225 YGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       225 ~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      +.|++++|++.++++|++|+...+ .+||.+++.+|..+|++
T Consensus       375 ~~l~~~~nv~~iv~eL~~~l~~~d-~e~r~~~v~~I~~la~k  415 (618)
T 1w63_A          375 FALVNGNNIRGMMKELLYFLDSCE-PEFKADCASGIFLAAEK  415 (618)
T ss_dssp             HHHCCSSSTHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHS
T ss_pred             HHHcccccHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHH
Confidence            999999999999999999999877 59999999999999997

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.84  E-value=1.2e-20  Score=182.30  Aligned_cols=206  Identities=12%  Similarity=0.160  Sum_probs=169.3

Q ss_pred             cccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcC
Q psy16364          3 KILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNN   82 (276)
Q Consensus         3 ~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~   82 (276)
                      ++.+.+|+.++.|...+. |+.++|.+||++|+++++.+++++|+..++++|..++...++ ++|.+++.+|..+|.   
T Consensus       308 ~i~~~~p~~~~~~~~~~~-~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~-~~r~~~v~aI~~la~---  382 (591)
T 2vgl_B          308 LIVQKRPEILKQEIKVFF-VKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDV-DFVRKAVRAIGRCAI---  382 (591)
T ss_dssp             HHHHHCCSTTTTCTTTTS-CCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCH-HHHHHHHHHHHHHHT---
T ss_pred             HHHHhChHHHHHHHHhhe-eccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHH---
Confidence            456778888888777654 655556999999999999999999999999999999987665 999999999999998   


Q ss_pred             CccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhcc
Q psy16364         83 YQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDR  162 (276)
Q Consensus        83 y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~  162 (276)
                       +|++++.|+++.+++++...|+++..+++..+.+++.+.|+.+.+++..+...++...         .+++...++   
T Consensus       383 -~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~---------~~~~~~~~~---  449 (591)
T 2vgl_B          383 -KVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLD---------EPDARAAMI---  449 (591)
T ss_dssp             -TCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCC---------SHHHHHHHH---
T ss_pred             -hChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhcc---------CHHHHHHHH---
Confidence             7888899999999999999888878888999999999999888888888887776532         256666677   


Q ss_pred             ccchhhhccccCCCc-----------------hHHHHHHHHHHHHhhhCccchH-HHHHHHHHHhcC-CCHHHHHHHHHH
Q psy16364        163 SSKIFNIKFSSRMPN-----------------HMKYLGLLAMSKILKTHPKSVQ-SHRDLIMQCLDD-KDESIRLRALDL  223 (276)
Q Consensus       163 ~~~~ilGef~~~~~~-----------------n~ryl~L~~l~~l~~~~~~~~~-~~~~~i~~~l~~-~D~~iq~ralel  223 (276)
                         |++|||+...++                 ..|...+.++.|+....|+... ..+..+-.+..| .|.++|+||.+|
T Consensus       450 ---wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y  526 (591)
T 2vgl_B          450 ---WIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIY  526 (591)
T ss_dssp             ---HHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             ---HHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHH
Confidence               999999886643                 3566778999999998887764 445555555554 899999999999


Q ss_pred             HHhcCCc
Q psy16364        224 LYGMVSK  230 (276)
Q Consensus       224 l~~l~~~  230 (276)
                      + ++.+.
T Consensus       527 ~-~ll~~  532 (591)
T 2vgl_B          527 W-RLLST  532 (591)
T ss_dssp             H-TTTTT
T ss_pred             H-HHHCc
Confidence            9 66654

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.64  E-value=8.1e-15  Score=141.42  Aligned_cols=245  Identities=11%  Similarity=0.129  Sum_probs=167.2

Q ss_pred             ChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC--CCcHH--HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcC-
Q psy16364          8 HPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS--KKTLM--EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNN-   82 (276)
Q Consensus         8 ~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~--~~n~~--~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~-   82 (276)
                      .|++.+...+.+.+||.|+++.||++|...+..++.  ++-+.  .+++.|.+.|...++ ..+...+..+..++..+. 
T Consensus       115 ~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~-~V~~~A~~aL~~i~~~~~~  193 (591)
T 2vgl_B          115 VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNP-MVVANAVAALSEISESHPN  193 (591)
T ss_dssp             SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCH-HHHHHHHHHHHHHTTSCCS
T ss_pred             hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCCh-hHHHHHHHHHHHHHhhCCC
Confidence            566777777888888888889998888888888764  44454  466777776654433 666666666666665321 


Q ss_pred             ---Ccc------------CCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHH-----HhhhhHHHHHHHHHHhhcCCCC
Q psy16364         83 ---YQY------------ITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI-----RVSAVRAFAVAQMSSLLASPSP  142 (276)
Q Consensus        83 ---y~~------------~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~-----~~~~~~~~~~~~~~~ll~~~~~  142 (276)
                         +..            ....||.+..+++++...++.. ..-.+.+.+.+.     ..++++..++..+..+..... 
T Consensus       194 ~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~-~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~-  271 (591)
T 2vgl_B          194 SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD-DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLP-  271 (591)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS-HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC-
T ss_pred             ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC-
Confidence               010            1245899999999887665432 333334444333     234566666665555432110 


Q ss_pred             CCCCCCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHH
Q psy16364        143 PLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALD  222 (276)
Q Consensus       143 ~~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~rale  222 (276)
                        .     .++.+..++ .+.+ -.+. ++.+.++|+||++|.++.+++..+|..+..|...++ |+.+.|.+||++|+|
T Consensus       272 --~-----~~~~~~~~~-~~~~-~~L~-~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~-~~~~d~~~Ir~~al~  340 (591)
T 2vgl_B          272 --K-----DSDYYNMLL-KKLA-PPLV-TLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFF-VKYNDPIYVKLEKLD  340 (591)
T ss_dssp             --B-----TTBSHHHHH-HHTH-HHHH-HHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS-CCTTSCHHHHHHHHH
T ss_pred             --C-----CHHHHHHHH-HHHH-HHHH-HHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhhe-eccCChHHHHHHHHH
Confidence              0     012222211 0000 1122 334478899999999999999999998888776543 665666999999999


Q ss_pred             HHHhcCCcchHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364        223 LLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQN  267 (276)
Q Consensus       223 ll~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~  267 (276)
                      +++.|++++|++.++++|..|+...++ +||.+.+.+|..+|++.
T Consensus       341 ~L~~l~~~~nv~~iv~~L~~~l~~~d~-~~r~~~v~aI~~la~~~  384 (591)
T 2vgl_B          341 IMIRLASQANIAQVLAELKEYATEVDV-DFVRKAVRAIGRCAIKV  384 (591)
T ss_dssp             HHHHTCCSSTHHHHHHHHHHHTTSSCH-HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCChhhHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHhC
Confidence            999999999999999999999988874 99999999999999874

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.37  E-value=5.3e-13  Score=120.61  Aligned_cols=179  Identities=15%  Similarity=0.156  Sum_probs=67.2

Q ss_pred             cccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcC
Q psy16364          3 KILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNN   82 (276)
Q Consensus         3 ~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~   82 (276)
                      |+++.+|+.++.|.+.+.++++|++++|...|+.+++.+...+  +..+.+|+..+.                       
T Consensus       165 kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d--~~a~~kLv~~l~-----------------------  219 (355)
T 3tjz_B          165 HLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND--RLAVSKMISKFT-----------------------  219 (355)
T ss_dssp             HHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHH-----------------------
T ss_pred             HHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc--hHHHHHHHHHHh-----------------------
Confidence            4455555555555555555555555555555555555554322  111222222111                       


Q ss_pred             CccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-----hhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHH
Q psy16364         83 YQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIR-----VSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFD  157 (276)
Q Consensus        83 y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~-----~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~  157 (276)
                       ......||-+..+++++...+....++..+.+.+++..     .+++.-+|+..+..+-. .          ..+.+..
T Consensus       220 -~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~----------~~~~~~~  287 (355)
T 3tjz_B          220 -RHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-C----------SAKELAP  287 (355)
T ss_dssp             -SSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC----------------------
T ss_pred             -cCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-C----------CHHHHHH
Confidence             11123599999999988665443213455666666653     23344444443333211 0          1234444


Q ss_pred             hhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy16364        158 EYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLL  224 (276)
Q Consensus       158 ~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell  224 (276)
                      ++      ..+|.|+.+.++|+||++|..+.+++..+|+.+++|...|.+|+.|+|.+|+..|+--|
T Consensus       288 a~------~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittl  348 (355)
T 3tjz_B          288 AV------SVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTL  348 (355)
T ss_dssp             CC------CTHHHHHHSSSSSSHHHHHHCC-------------------------------------
T ss_pred             HH------HHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence            44      89999999999999999999999999999999999999999999999999999997655

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=98.51  E-value=5.4e-06  Score=69.51  Aligned_cols=223  Identities=15%  Similarity=0.142  Sum_probs=129.9

Q ss_pred             HHHHHhhhcCCChhHHhhHHHHHHhhcCCC--cHH-----HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCC
Q psy16364         16 RDLIMQCLDDKDESIRLRALDLLYGMVSKK--TLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITN   88 (276)
Q Consensus        16 ~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~--n~~-----~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~   88 (276)
                      ++.++++|.++|+.++..|+..+..++...  +..     ..++.|++.|...+ .+.+...+..+..++..     .++
T Consensus         4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~-----~~~   77 (252)
T 4hxt_A            4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASG-----PDE   77 (252)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTS-----CHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcC-----ChH
Confidence            577899999999999999999999998654  222     25788888877655 36777767666666641     011


Q ss_pred             hhh------HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhcc
Q psy16364         89 FEW------YMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDR  162 (276)
Q Consensus        89 ~~W------~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~  162 (276)
                      ...      .+..+++++.-.                  .+.++..+...+..+....           ++. +..+.+.
T Consensus        78 ~~~~~~~~~~i~~l~~ll~~~------------------~~~v~~~a~~~L~~l~~~~-----------~~~-~~~~~~~  127 (252)
T 4hxt_A           78 AIKAIVDAGGVEVLVKLLTST------------------DSEVQKEAARALANIASGP-----------DEA-IKAIVDA  127 (252)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCS------------------SHHHHHHHHHHHHHHTTSC-----------HHH-HHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHcCC------------------CHHHHHHHHHHHHHHHcCC-----------HHH-HHHHHHC
Confidence            111      122333333211                  1223333333333332110           000 0000011


Q ss_pred             ccchhhhccccCCCchHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--cchHHH
Q psy16364        163 SSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDDKDESIRLRALDLLYGMVS--KKTLME  235 (276)
Q Consensus       163 ~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~D~~iq~ralell~~l~~--~~n~~~  235 (276)
                      ++.-.+-+++.+.+...+.-++.++..++...+...     ....+.++..|.++|..+|..|+..+..++.  +++.+.
T Consensus       128 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  207 (252)
T 4hxt_A          128 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKA  207 (252)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            111233344444445556666666666655443221     2346778889999999999999999988885  333333


Q ss_pred             -----HHHHHHHHhhhcCCchHHHHHHHHHHHHhccCCccccCCC
Q psy16364        236 -----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNF  275 (276)
Q Consensus       236 -----iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~~y~~~~~f  275 (276)
                           +++.|++.+...+ +..|+.-+..+..+++......-++|
T Consensus       208 l~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~  251 (252)
T 4hxt_A          208 IVDAGGVEVLQKLLTSTD-SEVQKEAQRALENIKSGGWLEHHHHH  251 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHTCBCCC----
T ss_pred             HHHCCCHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCCCccccccC
Confidence                 3566777766555 59999999999999988766555443

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=98.18  E-value=0.00013  Score=68.61  Aligned_cols=232  Identities=13%  Similarity=0.121  Sum_probs=140.2

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC---CcHH-----HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCcc
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSK---KTLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQY   85 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~---~n~~-----~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~   85 (276)
                      .-++.++++|.++|+.++..|+..+..+++.   .+..     .+++.|++.|...++...|...+..+..++..    .
T Consensus        87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~----~  162 (530)
T 1wa5_B           87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG----T  162 (530)
T ss_dssp             CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS----C
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC----C
Confidence            4478889999999999999999999998764   2332     36888888887764447888877777777652    1


Q ss_pred             CCChhh-----HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHH-----HHHHHHHhhcCCCCCCCCCCchhhhhh
Q psy16364         86 ITNFEW-----YMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAF-----AVAQMSSLLASPSPPLSQPSSRMAEMM  155 (276)
Q Consensus        86 ~~~~~W-----~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~~~~~~~L  155 (276)
                      .....+     .+..+++++.-....+.......+..+....+..+..     ++..+..++...          ..++.
T Consensus       163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~----------~~~v~  232 (530)
T 1wa5_B          163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN----------KPSLI  232 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC----------CHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC----------CHHHH
Confidence            000011     2455666665422111122222333333221222211     233344444321          13444


Q ss_pred             HHhhhccccchhhhccc-----------------------cCCCchHHHHHHHHHHHHhhhCccchH-----HHHHHHHH
Q psy16364        156 FDEYSDRSSKIFNIKFS-----------------------SRMPNHMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQ  207 (276)
Q Consensus       156 ~~~~~~~~~~~ilGef~-----------------------~~~~~n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~  207 (276)
                      ..++      |+++.+.                       .+.+...+.-++.++..++...+....     .....++.
T Consensus       233 ~~a~------~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~  306 (530)
T 1wa5_B          233 RTAT------WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE  306 (530)
T ss_dssp             HHHH------HHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred             HHHH------HHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHH
Confidence            4444      5555443                       333344566667777777765443222     34577888


Q ss_pred             HhcCCCHHHHHHHHHHHHhcCCcc--hHH-----HHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        208 CLDDKDESIRLRALDLLYGMVSKK--TLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       208 ~l~~~D~~iq~ralell~~l~~~~--n~~-----~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      +|.++|..+|..|+..+..++...  ..+     .+++.|+..|...+ ...|.+-+..+..++..
T Consensus       307 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~vr~~A~~aL~~l~~~  371 (530)
T 1wa5_B          307 LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK-ENIKKEACWTISNITAG  371 (530)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTS
T ss_pred             HHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCC-HHHHHHHHHHHHHHHcC
Confidence            999999999999999998887542  222     35566777776665 58999999999888864

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.08  E-value=0.00064  Score=55.32  Aligned_cols=204  Identities=16%  Similarity=0.157  Sum_probs=130.5

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcC--CCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCChhh
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVS--KKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEW   91 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~--~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~~~W   91 (276)
                      ++.+.++..|+|+=-+|+.-|+.++..+..  ++-..+++.+|+.-++++..-....++...+..++..        .|-
T Consensus        32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i--------~Pe  103 (253)
T 2db0_A           32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE--------KPE  103 (253)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH--------CHH
T ss_pred             HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh--------CHH
Confidence            678888999999888999999999999986  4668889999998888876544444444444444331        122


Q ss_pred             HHHHHHHHHHh---cCCc-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchh
Q psy16364         92 YMTVLVELTRM---EGTR-HGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIF  167 (276)
Q Consensus        92 ~v~~ll~ll~~---~~~~-~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~i  167 (276)
                      .+..+.-.+.-   .|+. ..-.++.-+-+++..+                             |+++...+      -=
T Consensus       104 ~v~~vVp~lfanyrigd~kikIn~~yaLeeIaran-----------------------------P~l~~~v~------rd  148 (253)
T 2db0_A          104 LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKAN-----------------------------PMLMASIV------RD  148 (253)
T ss_dssp             HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC-----------------------------HHHHHHHH------HH
T ss_pred             HHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhC-----------------------------hHHHHHHH------HH
Confidence            33333333221   1111 0011122222333222                             23333333      22


Q ss_pred             hhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHhh
Q psy16364        168 NIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMV--SKKTLMEIVKKLMVHMD  245 (276)
Q Consensus       168 lGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~--~~~n~~~iv~~l~~~l~  245 (276)
                      +|-.+.++++-.|..+|.-+..+...++..+....+.++..|.|.|.-+|--|.|-|..+.  |+. ++.++..-+..+.
T Consensus       149 i~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~~  227 (253)
T 2db0_A          149 FMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-LRKVVIKRLEELN  227 (253)
T ss_dssp             HHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHCC
T ss_pred             HHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHhc
Confidence            3444556666667777777777777777778888888999999999999999999986654  444 9999999998886


Q ss_pred             hcCCchHHHHHHHHHHH
Q psy16364        246 KAEGTMYRDELLSKVID  262 (276)
Q Consensus       246 ~~~~~~~~~~l~~~i~~  262 (276)
                      -..+ .....+...+..
T Consensus       228 D~S~-lv~~~V~egL~r  243 (253)
T 2db0_A          228 DTSS-LVNKTVKEGISR  243 (253)
T ss_dssp             CSCH-HHHHHHHHHHHH
T ss_pred             CcHH-HHHHHHHHHHHH
Confidence            6553 555555544443

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.06  E-value=0.00032  Score=60.09  Aligned_cols=57  Identities=16%  Similarity=0.118  Sum_probs=34.1

Q ss_pred             hHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Q psy16364         15 HRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVID   76 (276)
Q Consensus        15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~   76 (276)
                      -++.+++.|.|+|+.+|..|+..+..+.++    ..++.|++.|...++ ..|...+..+..
T Consensus        24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~----~~~~~L~~~l~d~~~-~vR~~A~~aL~~   80 (280)
T 1oyz_A           24 NDDELFRLLDDHNSLKRISSARVLQLRGGQ----DAVRLAIEFCSDKNY-IRRDIGAFILGQ   80 (280)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCCH----HHHHHHHHHHTCSSH-HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHccCCc----hHHHHHHHHHcCCCH-HHHHHHHHHHHH
Confidence            356667777777777777777777776532    345555555554332 455554444443

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=98.00  E-value=0.00059  Score=61.98  Aligned_cols=234  Identities=12%  Similarity=0.090  Sum_probs=135.2

Q ss_pred             HHHHHhhhcCCChhHHhhHHHHHHhhcC---CCcHH------HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364         16 RDLIMQCLDDKDESIRLRALDLLYGMVS---KKTLM------EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI   86 (276)
Q Consensus        16 ~~~I~~~L~d~D~sIr~~aL~Ll~~l~~---~~n~~------~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~   86 (276)
                      ++.+++.|.++|+.+|..|+..+..++.   ..+..      .+++.|++.|...++...|......+..++..+. ...
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~-~~~  100 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNS-LQT  100 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH-HHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH-HHH
Confidence            5668889999999999999999998753   12222      5788888888776445777777777776664100 000


Q ss_pred             CC--hhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHH-----HHHHHHHhhcCCCCCCCCCCchhhhhhHHhh
Q psy16364         87 TN--FEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAF-----AVAQMSSLLASPSPPLSQPSSRMAEMMFDEY  159 (276)
Q Consensus        87 ~~--~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~  159 (276)
                      ..  ..=.+..+++++.-....+.......+..+....+..+..     ++..+..++....         ..++...++
T Consensus       101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~---------~~~v~~~a~  171 (450)
T 2jdq_A          101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN---------RLTMTRNAV  171 (450)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC---------CHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC---------CHHHHHHHH
Confidence            00  0013445555554321111112222233333222222221     2333444443210         134555555


Q ss_pred             hccccchhhhccccC-----------------------CCchHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcC
Q psy16364        160 SDRSSKIFNIKFSSR-----------------------MPNHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDD  211 (276)
Q Consensus       160 ~~~~~~~ilGef~~~-----------------------~~~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~  211 (276)
                            |.+|.++..                       .+...+.-+..++..++...+...     ....+.++..|.+
T Consensus       172 ------~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  245 (450)
T 2jdq_A          172 ------WALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH  245 (450)
T ss_dssp             ------HHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC
T ss_pred             ------HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC
Confidence                  666655432                       223345555666666665433211     2346778889999


Q ss_pred             CCHHHHHHHHHHHHhcCCcch--HH-----HHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        212 KDESIRLRALDLLYGMVSKKT--LM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       212 ~D~~iq~ralell~~l~~~~n--~~-----~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      +|.++|..|+..+..++....  .+     .+++.|++.|...+ +..|...+..+..++..
T Consensus       246 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~vr~~a~~~L~~l~~~  306 (450)
T 2jdq_A          246 NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK-ESIKKEACWTISNITAG  306 (450)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHTTS
T ss_pred             CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCC-HHHHHHHHHHHHHHHcC
Confidence            999999999999988876432  11     36677777776655 58999988888888863

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=97.98  E-value=0.0025  Score=54.41  Aligned_cols=66  Identities=15%  Similarity=0.067  Sum_probs=46.2

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcC-CCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVS-KKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICS   79 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~-~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~   79 (276)
                      ...+.+.++|.|+|+.+|..|+..+..+.. +..+..+++.|.+.+....+...|...+..+..++.
T Consensus        54 ~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~  120 (280)
T 1oyz_A           54 DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCK  120 (280)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence            356778899999999999999999988874 345566666555443333344677766666665554

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=97.97  E-value=0.00039  Score=63.19  Aligned_cols=213  Identities=15%  Similarity=0.110  Sum_probs=122.2

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc-H------HHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT-L------MEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI   86 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n-~------~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~   86 (276)
                      ..++.++++|.++|+.+|..|+..+..++.... .      ..+++.|++.+....+...|...+..+..++...+-...
T Consensus       107 ~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~  186 (450)
T 2jdq_A          107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPE  186 (450)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCC
Confidence            467888999999999999999999999987532 1      135788888887544457888888878777753100000


Q ss_pred             -CChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh----hhhHH-----HHHHHHHHhhcCCCCCCCCCCchhhhhhH
Q psy16364         87 -TNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRV----SAVRA-----FAVAQMSSLLASPSPPLSQPSSRMAEMMF  156 (276)
Q Consensus        87 -~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~----~~~~~-----~~~~~~~~ll~~~~~~~~~~~~~~~~~L~  156 (276)
                       .-..=.+..+++++...    +..+.......+.+.    +....     .++..+..++                   
T Consensus       187 ~~~~~~~l~~L~~~l~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-------------------  243 (450)
T 2jdq_A          187 FAKVSPCLNVLSWLLFVS----DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-------------------  243 (450)
T ss_dssp             GGGTGGGHHHHHHHTTCC----CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-------------------
T ss_pred             HHHHHHHHHHHHHHHccC----CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-------------------
Confidence             00011344455554321    123322222222211    11100     1122222222                   


Q ss_pred             HhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--
Q psy16364        157 DEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDDKDESIRLRALDLLYGMVS--  229 (276)
Q Consensus       157 ~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~D~~iq~ralell~~l~~--  229 (276)
                                      ...+...+.-++.++..++...+...     ....+.+...|++++..+|+.|+..+..++.  
T Consensus       244 ----------------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~  307 (450)
T 2jdq_A          244 ----------------MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN  307 (450)
T ss_dssp             ----------------TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred             ----------------CCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence                            22233334444444444433322111     1345667788999999999999999988874  


Q ss_pred             cchHH-----HHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        230 KKTLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       230 ~~n~~-----~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      .+..+     .+++.|++.|...+ +..|.+.+..+..++..
T Consensus       308 ~~~~~~~~~~~~l~~L~~~l~~~~-~~v~~~a~~~L~~l~~~  348 (450)
T 2jdq_A          308 RAQIQTVIDANIFPALISILQTAE-FRTRKEAAWAITNATSG  348 (450)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHcC
Confidence            34443     34556666666555 58899988888888764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=97.94  E-value=0.0015  Score=61.03  Aligned_cols=233  Identities=12%  Similarity=0.080  Sum_probs=139.2

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC---CcHH-----HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCcc
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSK---KTLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQY   85 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~---~n~~-----~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~   85 (276)
                      .-++.+++.|.++|+.++..|+..+..++..   .+..     .+++.|++.|...+....|...+..+..++..    .
T Consensus        74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~----~  149 (528)
T 4b8j_A           74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG----T  149 (528)
T ss_dssp             -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS----C
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC----C
Confidence            3478899999999999999999999988653   2333     36888998887765457888777777777751    0


Q ss_pred             CCChh------hHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHH-----HHHHHHhhcCCCCCCCCCCchhhhh
Q psy16364         86 ITNFE------WYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFA-----VAQMSSLLASPSPPLSQPSSRMAEM  154 (276)
Q Consensus        86 ~~~~~------W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~~~~~~~  154 (276)
                       +...      =.+..+++++.-....+.......+..+....+..+...     +..+..++...      .   ...+
T Consensus       150 -~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~------~---~~~v  219 (528)
T 4b8j_A          150 -SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH------T---KLSM  219 (528)
T ss_dssp             -HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT------C---CHHH
T ss_pred             -HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC------C---CHHH
Confidence             0000      023444454443211111222233333333223333222     22333333211      1   1456


Q ss_pred             hHHhhhccccchhhhccccC----------------------CCchHHHHHHHHHHHHhhhCccchH-----HHHHHHHH
Q psy16364        155 MFDEYSDRSSKIFNIKFSSR----------------------MPNHMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQ  207 (276)
Q Consensus       155 L~~~~~~~~~~~ilGef~~~----------------------~~~n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~  207 (276)
                      ...++      |+++.++..                      .+...+.-++.++..++...+...+     .....++.
T Consensus       220 ~~~a~------~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~  293 (528)
T 4b8j_A          220 LRNAT------WTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE  293 (528)
T ss_dssp             HHHHH------HHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHH------HHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHH
Confidence            66666      666665443                      2233455566667766654433221     34567888


Q ss_pred             HhcCCCHHHHHHHHHHHHhcCCcc--hHHH-----HHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        208 CLDDKDESIRLRALDLLYGMVSKK--TLME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       208 ~l~~~D~~iq~ralell~~l~~~~--n~~~-----iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      +|.+++..+|..|+..+..++...  ..+.     +++.|+..|....++..|.+.+..+..++..
T Consensus       294 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~  359 (528)
T 4b8j_A          294 LLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG  359 (528)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred             HHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence            999999999999999998887632  2222     3566777776652358999999989888863

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=97.92  E-value=0.00035  Score=58.60  Aligned_cols=218  Identities=15%  Similarity=0.125  Sum_probs=121.6

Q ss_pred             HHHHHhhhcCCChhHHhhHHHHHHhhcCC--CcHHH-----HHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCC
Q psy16364         16 RDLIMQCLDDKDESIRLRALDLLYGMVSK--KTLME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITN   88 (276)
Q Consensus        16 ~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~--~n~~~-----iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~   88 (276)
                      .+.+.+.|.++|+.++..|+..+..+...  .+...     .++.|++.|...+ ...+...+..+..++..       +
T Consensus        14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~-------~   85 (252)
T 4db8_A           14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASG-------G   85 (252)
T ss_dssp             HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTS-------C
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcC-------C
Confidence            56778899999999999999999765542  22222     5677888777655 36666666666665541       0


Q ss_pred             hhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchh
Q psy16364         89 FEWYMTVLVELTRMEGTRHGALVAAQMMDVAIR-VSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIF  167 (276)
Q Consensus        89 ~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~i  167 (276)
                       +-....+.+          ......+.+++.. .+.++..+...+..+-...            +.-.....+.++.-.
T Consensus        86 -~~~~~~i~~----------~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~------------~~~~~~~~~~~~i~~  142 (252)
T 4db8_A           86 -NEQIQAVID----------AGALPALVQLLSSPNEQILQEALWALSNIASGG------------NEQIQAVIDAGALPA  142 (252)
T ss_dssp             -HHHHHHHHH----------TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC------------HHHHHHHHHTTHHHH
T ss_pred             -HHHHHHHHH----------cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC------------chHHHHHHHCCCHHH
Confidence             111111111          0111222222221 1233444444444442211            000000111122234


Q ss_pred             hhccccCCCchHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--cchHHHH----
Q psy16364        168 NIKFSSRMPNHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDDKDESIRLRALDLLYGMVS--KKTLMEI----  236 (276)
Q Consensus       168 lGef~~~~~~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~D~~iq~ralell~~l~~--~~n~~~i----  236 (276)
                      +-+++.+.+...+.-++.++..++...+...     ....+.++..|+++|..+|..|+..+..++.  +++.+.+    
T Consensus       143 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g  222 (252)
T 4db8_A          143 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG  222 (252)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence            4455555555666666777777665443322     2345778889999999999999999988873  3444443    


Q ss_pred             -HHHHHHHhhhcCCchHHHHHHHHHHHHhc
Q psy16364        237 -VKKLMVHMDKAEGTMYRDELLSKVIDICS  265 (276)
Q Consensus       237 -v~~l~~~l~~~~~~~~~~~l~~~i~~~~~  265 (276)
                       ++.|++.+...+ +..|..-+..+..+++
T Consensus       223 ~i~~L~~ll~~~~-~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          223 ALEKLEQLQSHEN-EKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHHTTTTCSS-SHHHHTHHHHHHTTC-
T ss_pred             cHHHHHHHhCCCC-HHHHHHHHHHHHHHhc
Confidence             344555555555 4888888877777664

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=97.89  E-value=0.00047  Score=56.18  Aligned_cols=185  Identities=16%  Similarity=0.120  Sum_probs=104.3

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC--cHH-----HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKK--TLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI   86 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~--n~~-----~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~   86 (276)
                      ...+.+..+|.++|+.++..|+..+..++..+  +..     ..++.|++.|...++ ..|...+..+..++..      
T Consensus        12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~------   84 (210)
T 4db6_A           12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASG------   84 (210)
T ss_dssp             -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTS------
T ss_pred             chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHHHhcC------
Confidence            45678899999999999999999999998543  222     357888888876543 6677666666666531      


Q ss_pred             CChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccc
Q psy16364         87 TNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIR-VSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSK  165 (276)
Q Consensus        87 ~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~  165 (276)
                       +... ...+++    .      .....+.+++.. .+.++..+...+..+....           .+..... .+.++.
T Consensus        85 -~~~~-~~~i~~----~------g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-----------~~~~~~~-~~~~~i  140 (210)
T 4db6_A           85 -GNEQ-IQAVID----A------GALPALVQLLSSPNEQILQEALWALSNIASGG-----------NEQIQAV-IDAGAL  140 (210)
T ss_dssp             -CHHH-HHHHHH----T------TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-----------HHHHHHH-HHTTHH
T ss_pred             -CcHH-HHHHHH----C------CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC-----------HHHHHHH-HHcCcH
Confidence             1111 011100    0      011122222211 1233444444444432210           0110000 111222


Q ss_pred             hhhhccccCCCchHHHHHHHHHHHHhhhCccchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy16364        166 IFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQCLDDKDESIRLRALDLLYGMVS  229 (276)
Q Consensus       166 ~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~~l~~~D~~iq~ralell~~l~~  229 (276)
                      -.+-+++.+.+...+.-++.++..++..++....     ...+.+...+++.|.++|+.|...+-.+++
T Consensus       141 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          141 PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            3444555555556677777777777765443221     345678889999999999999999977764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=97.86  E-value=0.00032  Score=69.74  Aligned_cols=248  Identities=11%  Similarity=0.081  Sum_probs=136.4

Q ss_pred             HHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC------cHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCcc
Q psy16364         12 VQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK------TLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQY   85 (276)
Q Consensus        12 v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~------n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~   85 (276)
                      +....+.++++|.|+++.||..|+..+..++...      .+..+++.+.+.+...+ ...|......+..+++.. +.+
T Consensus       172 ~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~-~~vr~~a~~~L~~l~~~~-~~~  249 (852)
T 4fdd_A          172 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEE-PEVRKNVCRALVMLLEVR-MDR  249 (852)
T ss_dssp             HHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHHHHC-HHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhC-HHH
Confidence            4567888899999999999999999998887532      34567777776554433 377877777777666521 111


Q ss_pred             CCChhhHHHHHHHHH-HhcCCcchHHH----HHHHHHHHHH------hhhhHHHHHHHHHHhh-----------cCCCCC
Q psy16364         86 ITNFEWYMTVLVELT-RMEGTRHGALV----AAQMMDVAIR------VSAVRAFAVAQMSSLL-----------ASPSPP  143 (276)
Q Consensus        86 ~~~~~W~v~~ll~ll-~~~~~~~~~~i----~~~l~~vi~~------~~~~~~~~~~~~~~ll-----------~~~~~~  143 (276)
                      ..  + +...++..+ ....+. ...+    .+.+..+...      .+..-...+..+...+           .+..--
T Consensus       250 ~~--~-~l~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed  325 (852)
T 4fdd_A          250 LL--P-HMHNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGG  325 (852)
T ss_dssp             HG--G-GHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----
T ss_pred             HH--H-HHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccc
Confidence            11  1 122233322 222221 2333    2233332210      0000011222222222           110000


Q ss_pred             CC-----CCCc---hhhhhhHHhhhccccc-------hhhhccccCCCchHHHHHHHHHHHHhhhCcc----chHHHHHH
Q psy16364        144 LS-----QPSS---RMAEMMFDEYSDRSSK-------IFNIKFSSRMPNHMKYLGLLAMSKILKTHPK----SVQSHRDL  204 (276)
Q Consensus       144 ~~-----~~~~---~~~~~L~~~~~~~~~~-------~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~----~~~~~~~~  204 (276)
                      ..     ...+   .....|...+ ...+.       -.+.+++.+.+...|.-++.++..++...+.    ..+.....
T Consensus       326 ~~~dd~~~~~~vr~~a~~~L~~la-~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~  404 (852)
T 4fdd_A          326 SGGDDTISDWNLRKCSAAALDVLA-NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPH  404 (852)
T ss_dssp             -------CCCCHHHHHHHHHHHHH-HHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHH
T ss_pred             cccccccccchHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            00     0000   0001111111 00011       1223344555567888888888888865432    34566777


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhcCC-------cchHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364        205 IMQCLDDKDESIRLRALDLLYGMVS-------KKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQN  267 (276)
Q Consensus       205 i~~~l~~~D~~iq~ralell~~l~~-------~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~  267 (276)
                      ++.+++|++..+|..|...+-.++.       ...+..+++.|++.+...+ +..|...+..+..+|+..
T Consensus       405 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~-~~vr~~a~~aL~~l~~~~  473 (852)
T 4fdd_A          405 LIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN-KRVQEAACSAFATLEEEA  473 (852)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHh
Confidence            8889999999999999988865543       3457788888888876655 588888888888887653

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.84  E-value=0.00034  Score=58.91  Aligned_cols=187  Identities=17%  Similarity=0.131  Sum_probs=120.5

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc-------HHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT-------LMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI   86 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n-------~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~   86 (276)
                      +....+..+|+|.|+.++.+||-.+-++...-+       ++.+.+.+++.++..+.                       
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dE-----------------------   89 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENE-----------------------   89 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTH-----------------------
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccch-----------------------
Confidence            567778899999999999999999999886521       34444444444332221                       


Q ss_pred             CChhhHHHHHHHHHHh--cCCcch----HHHHHHHHHHHHHh-hhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhh
Q psy16364         87 TNFEWYMTVLVELTRM--EGTRHG----ALVAAQMMDVAIRV-SAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEY  159 (276)
Q Consensus        87 ~~~~W~v~~ll~ll~~--~~~~~~----~~i~~~l~~vi~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~  159 (276)
                          -....-++.++.  .|...+    ..+.+.+.+++.+- +-++.++.+.+..+  .+.  ..     .+.+    .
T Consensus        90 ----kval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv~--~~-----~~~V----~  152 (265)
T 3b2a_A           90 ----KVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--QPL--ED-----SKLV----R  152 (265)
T ss_dssp             ----HHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CBS--CC-----CHHH----H
T ss_pred             ----hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--Ccc--cc-----hHHH----H
Confidence                011111111111  111112    34555566665532 23456666666555  211  00     1222    2


Q ss_pred             hccccchhhhccccCCCchHHHHHHHHHHHHhhhC--ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHH
Q psy16364        160 SDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTH--PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIV  237 (276)
Q Consensus       160 ~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~--~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv  237 (276)
                            .++.+.+.+.+..++-.|+.++..++...  ++........|-+.|++.|+.++.+|++.+..|.+..-.+.+.
T Consensus       153 ------~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~  226 (265)
T 3b2a_A          153 ------TYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVK  226 (265)
T ss_dssp             ------HHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCH
T ss_pred             ------HHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHH
Confidence                  45556667888889999999999999875  5777888888889999999999999999999999987767777


Q ss_pred             HHHHHHhhh
Q psy16364        238 KKLMVHMDK  246 (276)
Q Consensus       238 ~~l~~~l~~  246 (276)
                      .++..-+..
T Consensus       227 ~~~~~~~~~  235 (265)
T 3b2a_A          227 IELLKISRI  235 (265)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            766655533

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=97.78  E-value=0.0014  Score=65.15  Aligned_cols=205  Identities=13%  Similarity=0.149  Sum_probs=123.5

Q ss_pred             ChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC---CCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCc
Q psy16364          8 HPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS---KKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQ   84 (276)
Q Consensus         8 ~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~---~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~   84 (276)
                      .|+.-..-++.++++|.|+++.||..+..++..++.   +..|.++++.|+..+...+. ..|.-.+..+..+|+.....
T Consensus        84 ~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~-~~r~~al~~L~~i~~~~~~~  162 (852)
T 4fdd_A           84 PNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDY-NTCEGAFGALQKICEDSAEI  162 (852)
T ss_dssp             CHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSH-HHHHHHHHHHHHHHHHHTTH
T ss_pred             CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHhHHH
Confidence            344555778889999999999999999999999985   35688899999988765443 56665565555666521111


Q ss_pred             cC-----CChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhh
Q psy16364         85 YI-----TNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEY  159 (276)
Q Consensus        85 ~~-----~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~  159 (276)
                      +.     ...+..+..+++   ..+.               ..+.+|..++..+..++...       +......+....
T Consensus       163 ~~~~~~~~~~~~il~~l~~---~l~~---------------~~~~vR~~A~~aL~~~~~~~-------~~~~~~~~~~~l  217 (852)
T 4fdd_A          163 LDSDVLDRPLNIMIPKFLQ---FFKH---------------SSPKIRSHAVACVNQFIISR-------TQALMLHIDSFI  217 (852)
T ss_dssp             HHHCSSSSCHHHHHHHHTT---TTTC---------------SSHHHHHHHHHHHHTTTTTT-------CHHHHTSHHHHH
T ss_pred             hchhhhcchHHHHHHHHHH---HhcC---------------CCHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHH
Confidence            10     001111222211   1111               12334555665555444221       000111111111


Q ss_pred             hccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHH----HHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----
Q psy16364        160 SDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSH----RDLIMQCLDDKDESIRLRALDLLYGMVSKK----  231 (276)
Q Consensus       160 ~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~----~~~i~~~l~~~D~~iq~ralell~~l~~~~----  231 (276)
                            ..+.+.+.+.+...|.-++.++..++...+.....|    ...+..+++|.|.++|..|+|++..++...    
T Consensus       218 ------~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~  291 (852)
T 4fdd_A          218 ------ENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKD  291 (852)
T ss_dssp             ------HHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHH
T ss_pred             ------HHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHH
Confidence                  222333345566788889999999998887655444    455556778999999999999998988643    


Q ss_pred             ----hHHHHHHHHHHHh
Q psy16364        232 ----TLMEIVKKLMVHM  244 (276)
Q Consensus       232 ----n~~~iv~~l~~~l  244 (276)
                          .+..+++.+++.+
T Consensus       292 ~~~~~~~~l~p~ll~~l  308 (852)
T 4fdd_A          292 VLVRHLPKLIPVLVNGM  308 (852)
T ss_dssp             HHTTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHc
Confidence                3345555555555

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=97.74  E-value=0.0015  Score=60.72  Aligned_cols=241  Identities=7%  Similarity=0.035  Sum_probs=129.8

Q ss_pred             ChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcH-------HHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhh
Q psy16364          8 HPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTL-------MEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ   80 (276)
Q Consensus         8 ~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~-------~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~   80 (276)
                      .|+.-..-++.+.++|.++|+.+|..|+..+..++..+..       ...++.|++.|....+.+.+......+..++..
T Consensus        11 ~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~   90 (529)
T 1jdh_A           11 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH   90 (529)
T ss_dssp             ------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred             hhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence            3445456688899999999999999999999999865332       257888888887664446777777767766542


Q ss_pred             cCCccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhH-----HHHHHHHHHhhcCCCCCCCCCCchhhhhh
Q psy16364         81 NNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVR-----AFAVAQMSSLLASPSPPLSQPSSRMAEMM  155 (276)
Q Consensus        81 ~~y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~~~~~~~L  155 (276)
                      ++.+-..-..=.+..+++++......+......-+..+....+..+     ..++..+..++....          .++.
T Consensus        91 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~----------~~~~  160 (529)
T 1jdh_A           91 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN----------VKFL  160 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC----------HHHH
T ss_pred             chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC----------HHHH
Confidence            1100000000013344444433221112223344444443322222     224555566665421          2222


Q ss_pred             HHhhhccccchhhhccc-----------------------cCCCc-hHHHHHHHHHHHHhhhCccchH-----HHHHHHH
Q psy16364        156 FDEYSDRSSKIFNIKFS-----------------------SRMPN-HMKYLGLLAMSKILKTHPKSVQ-----SHRDLIM  206 (276)
Q Consensus       156 ~~~~~~~~~~~ilGef~-----------------------~~~~~-n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~  206 (276)
                      ..++      .+++.+.                       ...+. ..++-+..++..+.. .+....     ...+.++
T Consensus       161 ~~~~------~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~  233 (529)
T 1jdh_A          161 AITT------DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALG  233 (529)
T ss_dssp             HHHH------HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHH
T ss_pred             HHHH------HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHH
Confidence            2222      1222211                       11111 122222333333332 222211     2356677


Q ss_pred             HHhcCCCHHHHHHHHHHHHhcCCc----chHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        207 QCLDDKDESIRLRALDLLYGMVSK----KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       207 ~~l~~~D~~iq~ralell~~l~~~----~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      ..+++.+.++++.|+..+..++..    .....+++.|++.|...+ ++.|...+..+..++..
T Consensus       234 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~L~~~  296 (529)
T 1jdh_A          234 LHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD-INVVTCAAGILSNLTCN  296 (529)
T ss_dssp             TTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTT
T ss_pred             HHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCC-HHHHHHHHHHHHHHhcC
Confidence            788889999999999998777643    234577888888776554 58888888777777664

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=97.73  E-value=0.0022  Score=51.95  Aligned_cols=186  Identities=14%  Similarity=0.117  Sum_probs=104.3

Q ss_pred             hHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCChh
Q psy16364         11 SVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFE   90 (276)
Q Consensus        11 ~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~~~   90 (276)
                      .-....+.++++|+|+|+.+|..|+..+..+-.+.    .++.|++.|...++ ..|...+..+..+..          +
T Consensus        11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~----~~~~L~~~l~~~~~-~vr~~a~~~L~~~~~----------~   75 (201)
T 3ltj_A           11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDER----AVEPLIKALKDEDA-WVRRAAADALGQIGD----------E   75 (201)
T ss_dssp             CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG----GHHHHHHHTTCSSH-HHHHHHHHHHHHHCC----------G
T ss_pred             cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCChh----HHHHHHHHHcCCCH-HHHHHHHHHHHhhCC----------H
Confidence            34577889999999999999999999999887643    34556666653332 555544443332221          0


Q ss_pred             hHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhhc
Q psy16364         91 WYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIK  170 (276)
Q Consensus        91 W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilGe  170 (276)
                      -.+..+.+.+.-   .               .+.+|..++..+..+- .            ++.+          -.+-+
T Consensus        76 ~~~~~L~~~l~d---~---------------~~~vr~~a~~aL~~~~-~------------~~~~----------~~L~~  114 (201)
T 3ltj_A           76 RAVEPLIKALKD---E---------------DGWVRQSAAVALGQIG-D------------ERAV----------EPLIK  114 (201)
T ss_dssp             GGHHHHHHHTTC---S---------------SHHHHHHHHHHHHHHC-C------------GGGH----------HHHHH
T ss_pred             HHHHHHHHHHcC---C---------------CHHHHHHHHHHHHHhC-c------------HHHH----------HHHHH
Confidence            112233333321   1               1223444444443321 0            1111          11222


Q ss_pred             cccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCCc
Q psy16364        171 FSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGT  250 (276)
Q Consensus       171 f~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~~  250 (276)
                      ++.+.+...|.-+..++.++..      ++....+...++|+|..+|..|.+-+-.+-++    ..++.|...+...+ +
T Consensus       115 ~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~----~~~~~L~~~l~d~~-~  183 (201)
T 3ltj_A          115 ALKDEDWFVRIAAAFALGEIGD------ERAVEPLIKALKDEDGWVRQSAADALGEIGGE----RVRAAMEKLAETGT-G  183 (201)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHTC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH----HHHHHHHHHHHHCC-H
T ss_pred             HHcCCCHHHHHHHHHHHHHhCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCch----hHHHHHHHHHhCCC-H
Confidence            3344445566666666655532      23456677888999999999999999666443    23444444444444 4


Q ss_pred             hHHHHHHHHHHHH
Q psy16364        251 MYRDELLSKVIDI  263 (276)
Q Consensus       251 ~~~~~l~~~i~~~  263 (276)
                      ..|...+..+..+
T Consensus       184 ~vr~~A~~aL~~l  196 (201)
T 3ltj_A          184 FARKVAVNYLETH  196 (201)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            7777766655543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=97.71  E-value=0.003  Score=59.21  Aligned_cols=242  Identities=12%  Similarity=0.089  Sum_probs=133.8

Q ss_pred             HhHHHHHhhhcCC-ChhHHhhHHHHHHhhcCCC--cHH-----HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcC-Cc
Q psy16364         14 SHRDLIMQCLDDK-DESIRLRALDLLYGMVSKK--TLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNN-YQ   84 (276)
Q Consensus        14 ~~~~~I~~~L~d~-D~sIr~~aL~Ll~~l~~~~--n~~-----~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~-y~   84 (276)
                      ..++.++++|.++ |+.++..|+..+..++...  +..     ..++.|++.|...+ ...|...+..+..++..+. ++
T Consensus       130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~~  208 (530)
T 1wa5_B          130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDYR  208 (530)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccch
Confidence            5688899999997 8999999999999998743  222     34678888777544 3778777777777764200 00


Q ss_pred             cCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh-hh----hHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhh
Q psy16364         85 YITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRV-SA----VRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEY  159 (276)
Q Consensus        85 ~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~-~~----~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~  159 (276)
                      -..-..=.+..+++++.-....+.......+..+.... +.    ....++..+..++...          ..++...++
T Consensus       209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~----------d~~v~~~a~  278 (530)
T 1wa5_B          209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM----------DTETLVDAC  278 (530)
T ss_dssp             HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC----------CHHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC----------CHHHHHHHH
Confidence            00000001233344333211011111111222222110 10    0011222333333221          022333333


Q ss_pred             -----------------hccccchhhhccccCCCchHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcCCCHHHH
Q psy16364        160 -----------------SDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDDKDESIR  217 (276)
Q Consensus       160 -----------------~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~D~~iq  217 (276)
                                       .+.++.-.+-+++...+...+.-++.++..++..++...     ......++.+|++++..+|
T Consensus       279 ~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr  358 (530)
T 1wa5_B          279 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIK  358 (530)
T ss_dssp             HHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHH
Confidence                             011122233344444444566667777777776544322     2346678889999999999


Q ss_pred             HHHHHHHHhcCC--cchHHH-----HHHHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364        218 LRALDLLYGMVS--KKTLME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQN  267 (276)
Q Consensus       218 ~ralell~~l~~--~~n~~~-----iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~  267 (276)
                      ..|+..+..++.  .+..+.     +++.|++.|...+ ...|...+..+..++...
T Consensus       359 ~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~  414 (530)
T 1wa5_B          359 KEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE-YKTKKEACWAISNASSGG  414 (530)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhcC
Confidence            999999988874  344443     4556777776555 589999999998888753

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=97.68  E-value=0.0022  Score=52.37  Aligned_cols=186  Identities=15%  Similarity=0.111  Sum_probs=103.0

Q ss_pred             hHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCChhhHHH
Q psy16364         15 HRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYMT   94 (276)
Q Consensus        15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~~~W~v~   94 (276)
                      ..+.+++.|.|+|+.+|..|+..+..+-.+    ..++.|++.|...+ ...|...+..+..+..          +-.+.
T Consensus        20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~----~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~----------~~~~~   84 (211)
T 3ltm_A           20 KVEMYIKNLQDDSYYVRRAAAYALGKIGDE----RAVEPLIKALKDED-AWVRRAAADALGQIGD----------ERAVE   84 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----GGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC----------GGGHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCCc----cHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC----------HHHHH
Confidence            367788899999999999999999988764    34566666665443 3556554444443221          11223


Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhhccccC
Q psy16364         95 VLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSR  174 (276)
Q Consensus        95 ~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~  174 (276)
                      .+++++.-   .               .+.+|..++..+..+- .            ++.+          -.+-+++.+
T Consensus        85 ~L~~~l~~---~---------------~~~vr~~a~~aL~~~~-~------------~~~~----------~~L~~~l~d  123 (211)
T 3ltm_A           85 PLIKALKD---E---------------DGWVRQSAAVALGQIG-D------------ERAV----------EPLIKALKD  123 (211)
T ss_dssp             HHHHHTTC---S---------------SHHHHHHHHHHHHHHC-C------------GGGH----------HHHHHHTTC
T ss_pred             HHHHHHcC---C---------------CHHHHHHHHHHHHHhC-c------------HHHH----------HHHHHHHhC
Confidence            33333321   1               1223333444333321 0            0111          112223344


Q ss_pred             CCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCCchHHH
Q psy16364        175 MPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRD  254 (276)
Q Consensus       175 ~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~  254 (276)
                      .+...|.-+..+|.++..      ++....+...++|+|..+|..|.+-+-.+.+    ...++.|...+...+ +..|.
T Consensus       124 ~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~~~~~~L~~~l~d~~-~~vr~  192 (211)
T 3ltm_A          124 EDWFVRIAAAFALGEIGD------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----ERVRAAMEKLAETGT-GFARK  192 (211)
T ss_dssp             SSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----HHHHHHHHHHHHHCC-HHHHH
T ss_pred             CCHHHHHHHHHHHHHcCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----hhHHHHHHHHHhCCC-HHHHH
Confidence            445566666666655522      2345667778889999999999999866644    234444444444444 57888


Q ss_pred             HHHHHHHHHhccC
Q psy16364        255 ELLSKVIDICSQN  267 (276)
Q Consensus       255 ~l~~~i~~~~~~~  267 (276)
                      .-...+..+....
T Consensus       193 ~A~~aL~~~~~~~  205 (211)
T 3ltm_A          193 VAVNYLETHKSFN  205 (211)
T ss_dssp             HHHHHHHC-----
T ss_pred             HHHHHHHhcCCCC
Confidence            8777777666553

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=97.66  E-value=0.0018  Score=62.43  Aligned_cols=245  Identities=8%  Similarity=0.050  Sum_probs=133.7

Q ss_pred             hhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcH-------HHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhc
Q psy16364          9 PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTL-------MEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQN   81 (276)
Q Consensus         9 P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~-------~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~   81 (276)
                      +++-..-++.++++|.++|+.+|..|+..+..++.....       ...++.|++.|....+.+.+...+..+..++..+
T Consensus         9 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~   88 (644)
T 2z6h_A            9 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR   88 (644)
T ss_dssp             ---CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH
T ss_pred             hhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Confidence            333345688899999999999999999999999875432       2568888888876645577777777777665421


Q ss_pred             CCcc-CCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhH-----HHHHHHHHHhhcCCCCCCCCCCchhhhhh
Q psy16364         82 NYQY-ITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVR-----AFAVAQMSSLLASPSPPLSQPSSRMAEMM  155 (276)
Q Consensus        82 ~y~~-~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~~~~~~~L  155 (276)
                      +.+- .... =.+..+++++.-....+......-+..+....+..+     .-++..+..++...+          .++.
T Consensus        89 ~~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~----------~~~~  157 (644)
T 2z6h_A           89 EGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN----------VKFL  157 (644)
T ss_dssp             HHHHHHHTT-THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC----------HHHH
T ss_pred             hhHHHHHHc-CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC----------HHHH
Confidence            1100 0000 123344444433211112223344444443322211     124455555555421          1222


Q ss_pred             HHhh-------h----------ccccchhhhccccCCC-chHHHHHHHHHHHHhhhCccchH-----HHHHHHHHHhcCC
Q psy16364        156 FDEY-------S----------DRSSKIFNIKFSSRMP-NHMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQCLDDK  212 (276)
Q Consensus       156 ~~~~-------~----------~~~~~~ilGef~~~~~-~n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~~l~~~  212 (276)
                      ..++       .          ..++.-.+-+++...+ ...+.-++.++..+.. .+....     .....++..+++.
T Consensus       158 ~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~  236 (644)
T 2z6h_A          158 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDP  236 (644)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCS
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcC
Confidence            2111       0          0011111222222211 1233334444444442 222221     2356677788899


Q ss_pred             CHHHHHHHHHHHHhcCCc----chHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        213 DESIRLRALDLLYGMVSK----KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       213 D~~iq~ralell~~l~~~----~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      +.++|+.|+..+..++..    ..++.+++.|+..|...+ +..|...+..+..++..
T Consensus       237 ~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d-~~v~~~a~~aL~~L~~~  293 (644)
T 2z6h_A          237 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD-INVVTCAAGILSNLTCN  293 (644)
T ss_dssp             CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHcC
Confidence            999999999999888753    234577777887776555 58888888888777764

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=97.61  E-value=0.0031  Score=52.65  Aligned_cols=185  Identities=16%  Similarity=0.129  Sum_probs=103.3

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC--CcHHH-----HHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSK--KTLME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI   86 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~--~n~~~-----iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~   86 (276)
                      .-++.++++|.++++.++..|+..+..++..  ++...     .++.|++.|...+ ...|...+..+..++..+     
T Consensus        54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~-----  127 (252)
T 4db8_A           54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGG-----  127 (252)
T ss_dssp             THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSC-----
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhhcCC-----
Confidence            3567889999999999999999999999863  22222     5777887777644 366766666666665421     


Q ss_pred             CChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccc
Q psy16364         87 TNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIR-VSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSK  165 (276)
Q Consensus        87 ~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~  165 (276)
                         +-....+.+          ..+...+.+++.. .+.++..+...+..+....           ++... .+.+.++.
T Consensus       128 ---~~~~~~~~~----------~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-----------~~~~~-~~~~~~~i  182 (252)
T 4db8_A          128 ---NEQIQAVID----------AGALPALVQLLSSPNEQILQEALWALSNIASGG-----------NEQIQ-AVIDAGAL  182 (252)
T ss_dssp             ---HHHHHHHHH----------TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-----------HHHHH-HHHHTTCH
T ss_pred             ---chHHHHHHH----------CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-----------hHHHH-HHHHCCCH
Confidence               100000000          0112222222211 1223334444444432210           00000 01112222


Q ss_pred             hhhhccccCCCchHHHHHHHHHHHHhhhCccchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy16364        166 IFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQCLDDKDESIRLRALDLLYGMVS  229 (276)
Q Consensus       166 ~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~~l~~~D~~iq~ralell~~l~~  229 (276)
                      -.+-+.+...+..++.-++.+|..++..++....     ...+.+...+++.|.++|+.|...+..+++
T Consensus       183 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          183 PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            3444555555566677777777777654443221     245667888999999999999999977764

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=97.57  E-value=0.00084  Score=55.82  Aligned_cols=184  Identities=14%  Similarity=0.177  Sum_probs=104.0

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC-C-cHH-----HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSK-K-TLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI   86 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~-~-n~~-----~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~   86 (276)
                      ..++.++++|.++|+.++..|+..+..++.. . +..     ..++.|++.|...+ ...+...+..+..++..      
T Consensus        44 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~-~~v~~~a~~~L~~l~~~------  116 (252)
T 4hxt_A           44 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASG------  116 (252)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHTTS------
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcC------
Confidence            3678899999999999999999999999865 2 222     25777777776544 36666666666666631      


Q ss_pred             CChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccc
Q psy16364         87 TNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIR-VSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSK  165 (276)
Q Consensus        87 ~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~  165 (276)
                       +.. ....+.+          ......+.+++.. .+.++..+...+..+....           +.... ...+.++.
T Consensus       117 -~~~-~~~~~~~----------~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-----------~~~~~-~~~~~~~i  172 (252)
T 4hxt_A          117 -PDE-AIKAIVD----------AGGVEVLVKLLTSTDSEVQKEAARALANIASGP-----------DEAIK-AIVDAGGV  172 (252)
T ss_dssp             -CHH-HHHHHHH----------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-----------HHHHH-HHHHTTHH
T ss_pred             -CHH-HHHHHHH----------CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-----------HHHHH-HHHHCcCH
Confidence             001 1111100          0112222222221 1234444444444442210           00000 00011222


Q ss_pred             hhhhccccCCCchHHHHHHHHHHHHhhhCccchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy16364        166 IFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQCLDDKDESIRLRALDLLYGMV  228 (276)
Q Consensus       166 ~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~~l~~~D~~iq~ralell~~l~  228 (276)
                      -.+-+++.+.+...+.-++.++..++..++....     ...+.+.+.+++.|.++|..|+..+..++
T Consensus       173 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  240 (252)
T 4hxt_A          173 EVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK  240 (252)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence            4444555555566777777777777764443222     24567888999999999999999997665

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=97.57  E-value=0.0048  Score=61.09  Aligned_cols=242  Identities=7%  Similarity=0.027  Sum_probs=134.7

Q ss_pred             HHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc-------HHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCcc
Q psy16364         13 QSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT-------LMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQY   85 (276)
Q Consensus        13 ~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n-------~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~   85 (276)
                      ..-++.++.+|.++|+.||..|+..+..++....       ...+++.|++.|....+.+.|...+..+..++...+..-
T Consensus       149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~  228 (780)
T 2z6g_A          149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLL  228 (780)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHH
Confidence            4667889999999999999999999999986432       235788888888766455777777777776554211000


Q ss_pred             CCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHH-----HHHHHHHHhhcCCCCCCCCCCchhhhhhHHhh-
Q psy16364         86 ITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRA-----FAVAQMSSLLASPSPPLSQPSSRMAEMMFDEY-  159 (276)
Q Consensus        86 ~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~-  159 (276)
                      ..-..=.+..+++++.-....+......-+..+....+..+.     -++..+..++...+          .++...++ 
T Consensus       229 ~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~----------~~v~~~a~~  298 (780)
T 2z6g_A          229 AIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN----------VKFLAITTD  298 (780)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC----------HHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCC----------HHHHHHHHH
Confidence            000001234455555432222223334445555543333222     24445556655421          22222221 


Q ss_pred             ----------------hccccchhhhccccCCCc-hHHHHHHHHHHHHhhhCccchH-----HHHHHHHHHhcCCCHHHH
Q psy16364        160 ----------------SDRSSKIFNIKFSSRMPN-HMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQCLDDKDESIR  217 (276)
Q Consensus       160 ----------------~~~~~~~ilGef~~~~~~-n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~~l~~~D~~iq  217 (276)
                                      ...++.-.+-+++...+. ..+..+..++..++. .+....     .....++..|.+.+.+++
T Consensus       299 aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~  377 (780)
T 2z6g_A          299 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLV  377 (780)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHH
T ss_pred             HHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHH
Confidence                            000011111111111111 122233344444443 222211     234667778899999999


Q ss_pred             HHHHHHHHhcCCcc----hHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        218 LRALDLLYGMVSKK----TLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       218 ~ralell~~l~~~~----n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      +.|+..+..++...    ....+++.|+..|...+ ...|...+..+..++..
T Consensus       378 ~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d-~~vr~~A~~aL~~L~~~  429 (780)
T 2z6g_A          378 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD-INVVTCAAGILSNLTCN  429 (780)
T ss_dssp             HHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhC
Confidence            99999998776432    35678888888776655 58888888888887764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=97.51  E-value=0.0041  Score=58.14  Aligned_cols=216  Identities=11%  Similarity=0.096  Sum_probs=122.5

Q ss_pred             hHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc-HH------HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCC
Q psy16364         15 HRDLIMQCLDDKDESIRLRALDLLYGMVSKKT-LM------EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYIT   87 (276)
Q Consensus        15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n-~~------~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~   87 (276)
                      .++.++.+|.++++.++..|+..+..++.... .+      ..++.|++.|....+...+...+..+..+|..    . +
T Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~----~-~  235 (528)
T 4b8j_A          161 AVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG----K-P  235 (528)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS----S-S
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC----C-C
Confidence            67888999999999999999999999985422 11      24677888875444457777777777777752    1 2


Q ss_pred             Chhh-----HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhcc
Q psy16364         88 NFEW-----YMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDR  162 (276)
Q Consensus        88 ~~~W-----~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~  162 (276)
                      ...+     .+..+++++..   . ..++              +..+...+..+....           +.... .+.+.
T Consensus       236 ~~~~~~~~~~l~~L~~lL~~---~-~~~v--------------~~~a~~aL~~l~~~~-----------~~~~~-~~~~~  285 (528)
T 4b8j_A          236 QPSFEQTRPALPALARLIHS---N-DEEV--------------LTDACWALSYLSDGT-----------NDKIQ-AVIEA  285 (528)
T ss_dssp             CCCHHHHTTHHHHHHHHTTC---C-CHHH--------------HHHHHHHHHHHTSSC-----------HHHHH-HHHHT
T ss_pred             CCcHHHHHHHHHHHHHHHCC---C-CHHH--------------HHHHHHHHHHHHcCC-----------HHHHH-HHHHc
Confidence            2222     22333333321   1 1222              222332333222110           00000 00011


Q ss_pred             ccchhhhccccCCCchHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCC--cchHH
Q psy16364        163 SSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDDK-DESIRLRALDLLYGMVS--KKTLM  234 (276)
Q Consensus       163 ~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~-D~~iq~ralell~~l~~--~~n~~  234 (276)
                      ++.-.+-+.+...+..++.-++.++..++...+...     ......++..|.++ +..+|+.|+-.+..++.  .+.+.
T Consensus       286 g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~  365 (528)
T 4b8j_A          286 GVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQ  365 (528)
T ss_dssp             TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             CHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHH
Confidence            111233333344444455555555555554333211     12356677888888 99999999999977764  33343


Q ss_pred             HH-----HHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        235 EI-----VKKLMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       235 ~i-----v~~l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      .+     ++.|+..|...+ ...|.+.+..+..++..
T Consensus       366 ~~~~~~~i~~L~~lL~~~~-~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          366 AVINAGIIGPLVNLLQTAE-FDIKKEAAWAISNATSG  401 (528)
T ss_dssp             HHHHTTCHHHHHHHHHHSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHcC
Confidence            33     456666666555 58999998888888875

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=97.48  E-value=0.01  Score=58.39  Aligned_cols=196  Identities=9%  Similarity=0.075  Sum_probs=114.3

Q ss_pred             ChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC----CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCC
Q psy16364          8 HPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK----KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNY   83 (276)
Q Consensus         8 ~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~----~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y   83 (276)
                      .++.....++.++++|.++++.||..+...+..++..    ..|.++++.|+..+....+...|...+..+..+++.   
T Consensus        89 ~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~---  165 (861)
T 2bpt_A           89 SPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCES---  165 (861)
T ss_dssp             CHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHT---
T ss_pred             CHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHc---
Confidence            3444556678889999999999999999998888653    478899999998887652336666666655566652   


Q ss_pred             ccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHH---hhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhh
Q psy16364         84 QYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIR---VSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYS  160 (276)
Q Consensus        84 ~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~---~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~  160 (276)
                       +.+...           .. ......+...+...+..   .+.+|..+.+.+..+++....  +.......+.+   . 
T Consensus       166 -~~~~~~-----------~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~--~~~~~~~~~~l---l-  226 (861)
T 2bpt_A          166 -ADPQSQ-----------AL-VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN--NMEREGERNYL---M-  226 (861)
T ss_dssp             -SSTTSS-----------TT-GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH--HHTSHHHHHHH---H-
T ss_pred             -CChhhh-----------HH-HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH--HccChhHHHHH---H-
Confidence             221100           00 00112222222222221   233454455554444321100  00000000111   1 


Q ss_pred             ccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHH-----HHHHHHHhcCCCHHHHHHHHHHHHhcCCc
Q psy16364        161 DRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSH-----RDLIMQCLDDKDESIRLRALDLLYGMVSK  230 (276)
Q Consensus       161 ~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~-----~~~i~~~l~~~D~~iq~ralell~~l~~~  230 (276)
                           ..+.+.+.+.+...|-.++.++..++...+.....|     ...+..++.+.|.++|..|++++..++..
T Consensus       227 -----~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~  296 (861)
T 2bpt_A          227 -----QVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEE  296 (861)
T ss_dssp             -----HHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence                 223344555666788888888888888776554444     34455578899999999999999777653

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=97.43  E-value=0.01  Score=55.54  Aligned_cols=222  Identities=12%  Similarity=0.110  Sum_probs=120.5

Q ss_pred             hHHHHHhhhcCCChhHHhhHHHHHHhhcCCC---cHHH-----HHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364         15 HRDLIMQCLDDKDESIRLRALDLLYGMVSKK---TLME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI   86 (276)
Q Consensus        15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~---n~~~-----iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~   86 (276)
                      -++.+++.|+..|+..+..|..-+-.+.+.+   ++..     +||.|++.|...+....+.+....+..+++.     .
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~-----~  132 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG-----T  132 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTS-----C
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC-----C
Confidence            3788899999999999999999888876542   2333     5899999998776667777777777777641     1


Q ss_pred             CChhh------HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHH-----HHHHHHhhcCCCCCCCCCCchhhhhh
Q psy16364         87 TNFEW------YMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFA-----VAQMSSLLASPSPPLSQPSSRMAEMM  155 (276)
Q Consensus        87 ~~~~W------~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~~~~~~~L  155 (276)
                      ++..-      -+..+++++.-....+......-+.++....+..|...     +..+..++.....     .......+
T Consensus       133 ~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~-----~~~~~~~~  207 (510)
T 3ul1_B          133 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDL-----STLACGYL  207 (510)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCG-----GGSCHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccc-----hhhhHHHH
Confidence            00000      12334444432111111111222223322222222221     1222222222110     00001233


Q ss_pred             HHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch--H
Q psy16364        156 FDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT--L  233 (276)
Q Consensus       156 ~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n--~  233 (276)
                      +.++      |.++.......+....              ..+......+..+|++.|.+++..|+..+..++...+  .
T Consensus       208 ~~a~------~~L~nl~~~~~~~~~~--------------~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~  267 (510)
T 3ul1_B          208 RNLT------WTLSNLCRNKNPAPPL--------------DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI  267 (510)
T ss_dssp             HHHH------HHHHHHHCCCSSCCCH--------------HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred             HHHH------HHHHHHhhcccchhHH--------------HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhH
Confidence            3333      4444332222211111              1123445667788899999999999999988876432  2


Q ss_pred             HH-----HHHHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364        234 ME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQN  267 (276)
Q Consensus       234 ~~-----iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~  267 (276)
                      +.     +++.|+..|...+ ...+...+..+..++..+
T Consensus       268 ~~i~~~g~i~~Lv~lL~~~~-~~v~~~al~aL~nl~~~~  305 (510)
T 3ul1_B          268 EMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGT  305 (510)
T ss_dssp             HHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSC
T ss_pred             HHHHhcccchhhhhhhcCCC-hhhhhHHHHHHHHhhcCC
Confidence            22     3566777776665 478888888887776543

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=97.36  E-value=0.0072  Score=56.58  Aligned_cols=49  Identities=14%  Similarity=0.036  Sum_probs=30.4

Q ss_pred             hHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc----HHHHHHHHHHhhh
Q psy16364         11 SVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT----LMEIVKKLMVHMD   59 (276)
Q Consensus        11 ~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n----~~~iv~~L~~~L~   59 (276)
                      ......+.+..++.|+|+.||..|+..+..++..-.    ...++|.|...+.
T Consensus       161 ~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~  213 (588)
T 1b3u_A          161 VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLAS  213 (588)
T ss_dssp             HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhc
Confidence            345666667777778888888888877777764321    2345555554443

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.31  E-value=0.015  Score=48.62  Aligned_cols=172  Identities=14%  Similarity=0.144  Sum_probs=104.8

Q ss_pred             HHHhhhcCCChhHHhhHHHHHHhhcCC------CcHHHHHHHHHHhhh-hcCCchhHHHHHHHHHHHhhhcCCccCCChh
Q psy16364         18 LIMQCLDDKDESIRLRALDLLYGMVSK------KTLMEIVKKLMVHMD-KAEGTMYRDELLSKVIDICSQNNYQYITNFE   90 (276)
Q Consensus        18 ~I~~~L~d~D~sIr~~aL~Ll~~l~~~------~n~~~iv~~L~~~L~-~~~~~~~r~~li~~I~~~~~~~~y~~~~~~~   90 (276)
                      .+.+.++|+|...|+.|+.-+..+++.      .++..+++.|.+.+. ..+ ...|...+..+..++.    ...+.+.
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~----~l~~~~~   93 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN-VVLVAMAGKCLALLAK----GLAKRFS   93 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHH----HHGGGGH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHH----HHhhhHH
Confidence            467789999999999999999988752      356788888887774 433 2555555555555554    2222222


Q ss_pred             hHHHHHHH-HHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhh
Q psy16364         91 WYMTVLVE-LTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNI  169 (276)
Q Consensus        91 W~v~~ll~-ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilG  169 (276)
                      =|...++. ++...++.               .+.+|..+...+..+.++..         ...++          -.+.
T Consensus        94 ~~~~~ilp~ll~~l~d~---------------~~~vr~~a~~aL~~~~~~~~---------~~~ll----------~~l~  139 (242)
T 2qk2_A           94 NYASACVPSLLEKFKEK---------------KPNVVTALREAIDAIYASTS---------LEAQQ----------ESIV  139 (242)
T ss_dssp             HHHHHHHHHHHHGGGCC---------------CHHHHHHHHHHHHHHHTTSC---------HHHHH----------HHHH
T ss_pred             HHHHHHHHHHHHHHcCC---------------CHHHHHHHHHHHHHHHHcCC---------HHHHH----------HHHH
Confidence            22222222 22222221               12344445555555554321         12232          2234


Q ss_pred             ccccCCCchHHHHHHHHHHHHhhhC-cc-----chHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy16364        170 KFSSRMPNHMKYLGLLAMSKILKTH-PK-----SVQSHRDLIMQCLDDKDESIRLRALDLLYGMV  228 (276)
Q Consensus       170 ef~~~~~~n~ryl~L~~l~~l~~~~-~~-----~~~~~~~~i~~~l~~~D~~iq~ralell~~l~  228 (276)
                      +++.+.....|.-.+..+..++... |.     ..+.....+..+|+|++.++|..|.+.+..++
T Consensus       140 ~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~  204 (242)
T 2qk2_A          140 ESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLI  204 (242)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence            4556666678888888888866543 32     34566778888999999999999999985554

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=97.25  E-value=0.01  Score=58.35  Aligned_cols=97  Identities=9%  Similarity=0.104  Sum_probs=63.7

Q ss_pred             ccccCCCchHHHHHHHHHHHHhhhC------ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc----------chH
Q psy16364        170 KFSSRMPNHMKYLGLLAMSKILKTH------PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK----------KTL  233 (276)
Q Consensus       170 ef~~~~~~n~ryl~L~~l~~l~~~~------~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~----------~n~  233 (276)
                      +.+.+.....|.-++.++.+++...      ....+.....++.+++|. ..+|..|+.-+..++..          .-+
T Consensus       418 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~  496 (861)
T 2bpt_A          418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY  496 (861)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence            3334445567776666666666542      334566777788888886 88999888877555432          345


Q ss_pred             HHHHHHHHHHhhhcCC-chHHHHHHHHHHHHhccC
Q psy16364        234 MEIVKKLMVHMDKAEG-TMYRDELLSKVIDICSQN  267 (276)
Q Consensus       234 ~~iv~~l~~~l~~~~~-~~~~~~l~~~i~~~~~~~  267 (276)
                      ..+++.|++-+...+. ...|......+..+++..
T Consensus       497 ~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~  531 (861)
T 2bpt_A          497 PALVDGLIGAANRIDNEFNARASAFSALTTMVEYA  531 (861)
T ss_dssp             HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc
Confidence            6777777777764432 478888888777777654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=97.21  E-value=0.047  Score=51.19  Aligned_cols=239  Identities=13%  Similarity=0.110  Sum_probs=134.9

Q ss_pred             hHHHHHhhhcCCChhHHhhHHHHHHhhcCC-Cc--HH-----HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCc--
Q psy16364         15 HRDLIMQCLDDKDESIRLRALDLLYGMVSK-KT--LM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQ--   84 (276)
Q Consensus        15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~-~n--~~-----~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~--   84 (276)
                      -++.+++.++.+|+..+..|+.-+-.+.+. +|  +.     .+||.|++.|...+....+.+....+..++..+...  
T Consensus        77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~  156 (529)
T 3tpo_A           77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  156 (529)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            467889999999999999999998887643 22  32     268999999987776678877777777776521000  


Q ss_pred             cCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHH-----HHHHHHhhcCCCCCCCCCCchhhhhhHHhh
Q psy16364         85 YITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFA-----VAQMSSLLASPSPPLSQPSSRMAEMMFDEY  159 (276)
Q Consensus        85 ~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~  159 (276)
                      -+... =-+..+++++.-....+......-+..+....+..|...     +..+..++.....     ......+++.++
T Consensus       157 ~vv~~-Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~-----~~~~~~~~~~a~  230 (529)
T 3tpo_A          157 AVVDG-GAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDL-----STLACGYLRNLT  230 (529)
T ss_dssp             HHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCG-----GGSCHHHHHHHH
T ss_pred             HHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccch-----hHhHHHHHHHHH
Confidence            00000 013344444433222222222333444443334444332     2333444433210     000123455555


Q ss_pred             hccccchhhhcccc-----------------------CCCchHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcC
Q psy16364        160 SDRSSKIFNIKFSS-----------------------RMPNHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDD  211 (276)
Q Consensus       160 ~~~~~~~ilGef~~-----------------------~~~~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~  211 (276)
                            |.++....                       +.+...+.-+..++..++.......     ......++.+|.+
T Consensus       231 ------~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~  304 (529)
T 3tpo_A          231 ------WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA  304 (529)
T ss_dssp             ------HHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC
T ss_pred             ------HHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC
Confidence                  55554433                       2233334445556666555433211     1235667889999


Q ss_pred             CCHHHHHHHHHHHHhcCCc--chHHHHH-----HHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        212 KDESIRLRALDLLYGMVSK--KTLMEIV-----KKLMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       212 ~D~~iq~ralell~~l~~~--~n~~~iv-----~~l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      ++..+|..|+..+..++..  .+...++     +.|...|...+ +..|.+.+..+..+|..
T Consensus       305 ~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~-~~i~~~a~~aL~nl~~~  365 (529)
T 3tpo_A          305 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK-TNIQKEATWTMSNITAG  365 (529)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSS-HHHHHHHHHHHHHHHTS
T ss_pred             CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCC-HHHHHHHHHHHHHHhcc
Confidence            9999999999999878643  3333333     33555554444 58999999888888764

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=97.19  E-value=0.03  Score=50.54  Aligned_cols=190  Identities=9%  Similarity=0.139  Sum_probs=111.5

Q ss_pred             hhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC----CcHHHHHHHHHHhhhhcC-CchhHHHHHHHHHHHhhhcCCc
Q psy16364         10 KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK----KTLMEIVKKLMVHMDKAE-GTMYRDELLSKVIDICSQNNYQ   84 (276)
Q Consensus        10 ~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~----~n~~~iv~~L~~~L~~~~-~~~~r~~li~~I~~~~~~~~y~   84 (276)
                      +.-+..++.++++|.++++.+ ..+...+..++..    ..|.++++.|+..+.... +...|.-.+..+..+++...+.
T Consensus        86 ~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~  164 (462)
T 1ibr_B           86 NARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE  164 (462)
T ss_dssp             HHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGG
T ss_pred             HHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCch
Confidence            334456677889999999999 8888888888753    378889999998887651 3366666666666666631111


Q ss_pred             cCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHH---hhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHH-hhh
Q psy16364         85 YITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIR---VSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFD-EYS  160 (276)
Q Consensus        85 ~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~---~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~-~~~  160 (276)
                      ..  .+                ....+...+...+..   .+.+|..++..+..+++....  +..    ...... .. 
T Consensus       165 ~~--~~----------------~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~--~~~----~~~~~~~l~-  219 (462)
T 1ibr_B          165 QL--QD----------------KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA--NFD----KESERHFIM-  219 (462)
T ss_dssp             GT--GG----------------GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH--HHT----SHHHHHHHH-
T ss_pred             hh--Hh----------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH--hhh----hhHHHHHHH-
Confidence            00  01                112223333333322   134455555555554432100  000    000011 11 


Q ss_pred             ccccchhhhccccCCCchHHHHHHHHHHHHhhhCccc----hH-HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc
Q psy16364        161 DRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKS----VQ-SHRDLIMQCLDDKDESIRLRALDLLYGMVSK  230 (276)
Q Consensus       161 ~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~----~~-~~~~~i~~~l~~~D~~iq~ralell~~l~~~  230 (276)
                           ..+.+.....+...|--++.++..++...+..    .+ ...+.++.++++.+.++|..|++++..++..
T Consensus       220 -----~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~  289 (462)
T 1ibr_B          220 -----QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE  289 (462)
T ss_dssp             -----HHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence                 23344455556667777788888888776543    33 5566677788999999999999998777653

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=97.17  E-value=0.025  Score=56.14  Aligned_cols=235  Identities=14%  Similarity=0.094  Sum_probs=130.9

Q ss_pred             HHHhHHHHHhhhcCC--ChhHHhhHHHHHHhhcCCCcH-------HHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcC
Q psy16364         12 VQSHRDLIMQCLDDK--DESIRLRALDLLYGMVSKKTL-------MEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNN   82 (276)
Q Consensus        12 v~~~~~~I~~~L~d~--D~sIr~~aL~Ll~~l~~~~n~-------~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~   82 (276)
                      ++.-.+.+.++|.++  |..++..|+..|..++...++       ...+|.|+..|+..+. ......+..+..++...+
T Consensus       375 i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~-~i~~~al~~L~NLt~~~d  453 (810)
T 3now_A          375 ALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQ-SCLYGVVTTFVNLCNAYE  453 (810)
T ss_dssp             HHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCCh-HHHHHHHHHHHHHcCCch
Confidence            456677888999988  999999999999999876443       2467888888875443 566666777777765211


Q ss_pred             C-----------ccCC---C-----------hhh--------HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHH-
Q psy16364         83 Y-----------QYIT---N-----------FEW--------YMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAF-  128 (276)
Q Consensus        83 y-----------~~~~---~-----------~~W--------~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~-  128 (276)
                      -           +|..   +           ..|        -+..+.+++.-....+..+...-+..+.. .++.|.. 
T Consensus       454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~V  532 (810)
T 3now_A          454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKV  532 (810)
T ss_dssp             CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHH
Confidence            0           0000   0           000        12333333332111111222222333321 1222221 


Q ss_pred             ----HHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhhccc-------------------------cCCCc-h
Q psy16364        129 ----AVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFS-------------------------SRMPN-H  178 (276)
Q Consensus       129 ----~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilGef~-------------------------~~~~~-n  178 (276)
                          ++..+..++....          ....+.|+      |.++..+                         ....+ -
T Consensus       533 v~~Gaip~Lv~LL~s~~----------~~~k~~Aa------~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l  596 (810)
T 3now_A          533 VQEGGVKALLRMALEGT----------EKGKRHAT------QALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTAL  596 (810)
T ss_dssp             HHTTHHHHHHHHHHSSC----------HHHHHHHH------HHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHH
T ss_pred             HHCCCHHHHHHHHccCC----------HHHHHHHH------HHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHH
Confidence                2233334443211          22333344      5444432                         21111 1


Q ss_pred             HHHHHHHHHHHHhhhCccchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchH-HHH------HHHHHHHhhh
Q psy16364        179 MKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTL-MEI------VKKLMVHMDK  246 (276)
Q Consensus       179 ~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~-~~i------v~~l~~~l~~  246 (276)
                      .++-++.+|..++...++...     ...+.++.+|.+.+..+|+-|.+.+..|+..+.. ..+      ++-|+..+..
T Consensus       597 ~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s  676 (810)
T 3now_A          597 ENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCED  676 (810)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcC
Confidence            234567777777765443221     3456788899999999999999999888765333 332      3344444444


Q ss_pred             cCCchHHHHHHHHHHHHhc
Q psy16364        247 AEGTMYRDELLSKVIDICS  265 (276)
Q Consensus       247 ~~~~~~~~~l~~~i~~~~~  265 (276)
                      . +...|.+-+..+..++.
T Consensus       677 ~-d~~vq~~Aa~ALanLt~  694 (810)
T 3now_A          677 E-DEETATACAGALAIITS  694 (810)
T ss_dssp             S-SHHHHHHHHHHHHHHHH
T ss_pred             C-CHHHHHHHHHHHHHHhC
Confidence            4 45889888888888876

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=97.07  E-value=0.038  Score=54.57  Aligned_cols=231  Identities=13%  Similarity=0.099  Sum_probs=120.7

Q ss_pred             HHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC--cHH-----HHHHHHHHhhhhcCC-chhHHHHHHHHHHHhhhcCCc
Q psy16364         13 QSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK--TLM-----EIVKKLMVHMDKAEG-TMYRDELLSKVIDICSQNNYQ   84 (276)
Q Consensus        13 ~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~--n~~-----~iv~~L~~~L~~~~~-~~~r~~li~~I~~~~~~~~y~   84 (276)
                      ...++.++++|.++|+.+|..|+..+..++...  +..     ..++.|++.|..... ...+...+..+..++..    
T Consensus       398 ~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~----  473 (780)
T 2z6g_A          398 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR----  473 (780)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS----
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc----
Confidence            456777888888889999999998888887643  221     246777777765332 25666666666666531    


Q ss_pred             cCCCh---hh------HHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhhhhHH-----HHHHHHHHhhcCCCCCCCCCCc
Q psy16364         85 YITNF---EW------YMTVLVELTRMEGT-RHGALVAAQMMDVAIRVSAVRA-----FAVAQMSSLLASPSPPLSQPSS  149 (276)
Q Consensus        85 ~~~~~---~W------~v~~ll~ll~~~~~-~~~~~i~~~l~~vi~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~~  149 (276)
                       .++.   .|      .+..+++++..... .+......-+.++.. .+..+.     .++..+..++...         
T Consensus       474 -~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~---------  542 (780)
T 2z6g_A          474 -HQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRA---------  542 (780)
T ss_dssp             -STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS-SHHHHHHHHHTTHHHHHHHHHHHH---------
T ss_pred             -CchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc-CHHHHHHHHHCCCHHHHHHHHHhc---------
Confidence             1111   11      13344444432211 111222223333322 111111     1233333333221         


Q ss_pred             hhhhhhHHhhhccccchhhhc--cccCCC-chHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcCCCHHHHHHHH
Q psy16364        150 RMAEMMFDEYSDRSSKIFNIK--FSSRMP-NHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDDKDESIRLRAL  221 (276)
Q Consensus       150 ~~~~~L~~~~~~~~~~~ilGe--f~~~~~-~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~D~~iq~ral  221 (276)
                       ..++-++++      |.+|.  |..... ..++..++.+|..++. ++...     ......++.+|.+.+..+|+.|.
T Consensus       543 -~~~~~~~aa------~al~nq~~~~~~~~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~  614 (780)
T 2z6g_A          543 -HQDTQRRTS------MGGTQQQFVEGVRMEEIVEACTGALHILAR-DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA  614 (780)
T ss_dssp             -HHHHHHTTC------------CCSTTCCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHH
T ss_pred             -chhHHHHHh------hccccchhhcccChHHHHHHHHHHHHHHhc-ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHH
Confidence             123334444      87775  443321 2355566677777653 22211     12356778899999999999999


Q ss_pred             HHHHhcCCcchHHHHHHH-----HHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        222 DLLYGMVSKKTLMEIVKK-----LMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       222 ell~~l~~~~n~~~iv~~-----l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      ..+..++..+..+..+.+     .+..|....++..|..-+..+..+++.
T Consensus       615 ~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~  664 (780)
T 2z6g_A          615 GVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED  664 (780)
T ss_dssp             HHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            988777755555444443     222333334457777777777776664

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=96.98  E-value=0.014  Score=47.49  Aligned_cols=155  Identities=17%  Similarity=0.127  Sum_probs=90.6

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCChhhHH
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYM   93 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~~~W~v   93 (276)
                      .-.+.+.++|.|+|+.||..|+..+..+.++..    ++.|++.|...++ ..|...+..+..+..          +-.+
T Consensus        50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~----~~~L~~~l~~~~~-~vr~~a~~aL~~~~~----------~~~~  114 (211)
T 3ltm_A           50 RAVEPLIKALKDEDAWVRRAAADALGQIGDERA----VEPLIKALKDEDG-WVRQSAAVALGQIGD----------ERAV  114 (211)
T ss_dssp             GGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGG----HHHHHHHTTCSSH-HHHHHHHHHHHHHCC----------GGGH
T ss_pred             cHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH----HHHHHHHHcCCCH-HHHHHHHHHHHHhCc----------HHHH
Confidence            346788899999999999999999999876543    4555555544333 555544444433221          1112


Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhhcccc
Q psy16364         94 TVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSS  173 (276)
Q Consensus        94 ~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilGef~~  173 (276)
                      ..+.+++.   +               ..+.+|..++..+..+ ..            ++.+          ..+-+++.
T Consensus       115 ~~L~~~l~---d---------------~~~~vr~~a~~aL~~~-~~------------~~~~----------~~L~~~l~  153 (211)
T 3ltm_A          115 EPLIKALK---D---------------EDWFVRIAAAFALGEI-GD------------ERAV----------EPLIKALK  153 (211)
T ss_dssp             HHHHHHTT---C---------------SSHHHHHHHHHHHHHH-CC------------GGGH----------HHHHHHTT
T ss_pred             HHHHHHHh---C---------------CCHHHHHHHHHHHHHc-CC------------HHHH----------HHHHHHHc
Confidence            23333331   1               1223444455444443 11            1111          22334445


Q ss_pred             CCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc
Q psy16364        174 RMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK  230 (276)
Q Consensus       174 ~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~  230 (276)
                      +.+..+|.-+..+|.++..      +.....+...++|+|..+|+.|.+.|..+.+.
T Consensus       154 d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~  204 (211)
T 3ltm_A          154 DEDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF  204 (211)
T ss_dssp             CSSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred             CCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            5566677777777776632      45667788889999999999999999766544

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=96.95  E-value=0.048  Score=50.86  Aligned_cols=232  Identities=14%  Similarity=0.141  Sum_probs=116.3

Q ss_pred             HHhHHHHHhhhcCCChhHHhhHHHHHHhhcC----CCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCC
Q psy16364         13 QSHRDLIMQCLDDKDESIRLRALDLLYGMVS----KKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITN   88 (276)
Q Consensus        13 ~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~----~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~   88 (276)
                      .+..+.+..++ |++..||..+...+..++.    +..+..+++.|...+. .++...|......+..++.    ...+.
T Consensus        48 ~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~-~~~~~vR~~a~~~L~~l~~----~~~~~  121 (588)
T 1b3u_A           48 SELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLAT-VEETVVRDKAVESLRAISH----EHSPS  121 (588)
T ss_dssp             HTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTT-SSCHHHHHHHHHHHHHHHT----TSCHH
T ss_pred             HHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHH----HCCHH
Confidence            44556666666 6677888888888877663    2334556555544332 2333666666666666654    22211


Q ss_pred             hhh--HHHHHHHHHH---------------hcCCcchHHHHHHHHHHHH-----HhhhhHHHHHHHHHHhhcCCCCCCCC
Q psy16364         89 FEW--YMTVLVELTR---------------MEGTRHGALVAAQMMDVAI-----RVSAVRAFAVAQMSSLLASPSPPLSQ  146 (276)
Q Consensus        89 ~~W--~v~~ll~ll~---------------~~~~~~~~~i~~~l~~vi~-----~~~~~~~~~~~~~~~ll~~~~~~~~~  146 (276)
                      ..|  +...+.++..               ......+......+...+.     ..+.+|..+...+..+.+...     
T Consensus       122 ~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~-----  196 (588)
T 1b3u_A          122 DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE-----  196 (588)
T ss_dssp             HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC-----
T ss_pred             HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence            111  1122222111               0001111122222222221     123455555555554443210     


Q ss_pred             CCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCcc--chHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy16364        147 PSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPK--SVQSHRDLIMQCLDDKDESIRLRALDLL  224 (276)
Q Consensus       147 ~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~--~~~~~~~~i~~~l~~~D~~iq~ralell  224 (276)
                          .........      -.+-+++.+.+...|..++.++..++...+.  ..+.....+...++|++..+|+.|.+.+
T Consensus       197 ----~~~~~~~l~------~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l  266 (588)
T 1b3u_A          197 ----LDNVKSEII------PMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF  266 (588)
T ss_dssp             ----HHHHHHTHH------HHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTH
T ss_pred             ----HHhHHHHHH------HHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence                000001111      1222333445556777778888887765442  2234456667778899999999999988


Q ss_pred             HhcCCc---ch-HHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        225 YGMVSK---KT-LMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       225 ~~l~~~---~n-~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      -.++..   +. ...+++.++..+...+ +..|...+..+..+++.
T Consensus       267 ~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~  311 (588)
T 1b3u_A          267 TELQKAVGPEITKTDLVPAFQNLMKDCE-AEVRAAASHKVKEFCEN  311 (588)
T ss_dssp             HHHHHHHCHHHHHHTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCcccchhHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHH
Confidence            666542   11 2334444444444333 47777777766666653

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.08  Score=44.79  Aligned_cols=177  Identities=12%  Similarity=0.136  Sum_probs=106.3

Q ss_pred             HHhhhcCCChhHHhhHHHHHHh-hcC--------CCcHHHHHHHHHHhh-hhcCCchhHHHHHHHHHHHhhhcCCccC-C
Q psy16364         19 IMQCLDDKDESIRLRALDLLYG-MVS--------KKTLMEIVKKLMVHM-DKAEGTMYRDELLSKVIDICSQNNYQYI-T   87 (276)
Q Consensus        19 I~~~L~d~D~sIr~~aL~Ll~~-l~~--------~~n~~~iv~~L~~~L-~~~~~~~~r~~li~~I~~~~~~~~y~~~-~   87 (276)
                      +.+.|.+++..-|+.|++-+.. +++        ..++..++..|.+.+ ..... ..+..-+..+..+++    ... +
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~-~v~~~A~~al~~la~----~l~~~   95 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANI-QAVALAAQSVELICD----KLKTP   95 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHHH----HHCTT
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHH----hcccc
Confidence            3456789999999999999988 763        235677888888877 33332 445555555555564    333 3


Q ss_pred             Ch--hhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccc
Q psy16364         88 NF--EWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSK  165 (276)
Q Consensus        88 ~~--~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~  165 (276)
                      .+  ++....+-.++...++.. ..+.+.              +...+..+++..+.... . +....++          
T Consensus        96 ~f~~~y~~~llp~ll~~l~dkk-~~V~~a--------------a~~al~~i~~~~~~~~~-~-~~l~~ll----------  148 (249)
T 2qk1_A           96 GFSKDYVSLVFTPLLDRTKEKK-PSVIEA--------------IRKALLTICKYYDPLAS-S-GRNEDML----------  148 (249)
T ss_dssp             TSCHHHHHHHHHHHHHGGGCCC-HHHHHH--------------HHHHHHHHHHHSCTTCT-T-CTTHHHH----------
T ss_pred             cccHHHHHHHHHHHHHHHcCCC-HHHHHH--------------HHHHHHHHHHHcccccc-C-CcHHHHH----------
Confidence            33  344455555555544432 233222              22222233332211000 0 0012333          


Q ss_pred             hhhhccccCCCchHHHHHHHHHHHHhhhCcc-------ch-HHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy16364        166 IFNIKFSSRMPNHMKYLGLLAMSKILKTHPK-------SV-QSHRDLIMQCLDDKDESIRLRALDLLYGM  227 (276)
Q Consensus       166 ~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~-------~~-~~~~~~i~~~l~~~D~~iq~ralell~~l  227 (276)
                      -.+-+++.+.....|.-++.++..++...+.       .+ +.....+..++.|.+.++|..|.|-+-.+
T Consensus       149 ~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i  218 (249)
T 2qk1_A          149 KDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAIL  218 (249)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            2234555666667888889999998877653       34 66777888899999999999999998554

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=96.90  E-value=0.11  Score=53.50  Aligned_cols=255  Identities=11%  Similarity=0.096  Sum_probs=133.2

Q ss_pred             hHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC---CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCC
Q psy16364         11 SVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK---KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYIT   87 (276)
Q Consensus        11 ~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~---~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~   87 (276)
                      .+....+.+..+|.|+++.||.+|+..+..++..   .-+..+++.|+..|....+...|...+..+..++..-.-.+.+
T Consensus       172 ~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~  251 (1230)
T 1u6g_C          172 FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE  251 (1230)
T ss_dssp             THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTT
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHH
Confidence            3467788889999999999999999999988753   2244578888888866543345655555555555421113333


Q ss_pred             ChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhh-hhHHHHHHHHHHhhcCCCCC---------------C---CC--
Q psy16364         88 NFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVS-AVRAFAVAQMSSLLASPSPP---------------L---SQ--  146 (276)
Q Consensus        88 ~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~-~~~~~~~~~~~~ll~~~~~~---------------~---~~--  146 (276)
                      -.+=.+..+++.+....+.+.....+.+..++...+ .++++.-.-+-.+++....-               .   ..  
T Consensus       252 ~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~  331 (1230)
T 1u6g_C          252 YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDD  331 (1230)
T ss_dssp             SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----------------------
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccc
Confidence            223344555554443222222222222222222221 12222211112222211100               0   00  


Q ss_pred             ----------CCchhhhhhHHhhhcc-------cc----------chhhhccccCCCchHHHHHHHHHHHHhhhCc----
Q psy16364        147 ----------PSSRMAEMMFDEYSDR-------SS----------KIFNIKFSSRMPNHMKYLGLLAMSKILKTHP----  195 (276)
Q Consensus       147 ----------~~~~~~~~L~~~~~~~-------~~----------~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~----  195 (276)
                                .....+++ +.++.+.       .+          .-.+.+++...+.+.|.-++.++..++....    
T Consensus       332 ~~~~~~~~~~~~d~~~~v-R~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~  410 (1230)
T 1u6g_C          332 DQGSDDEYSDDDDMSWKV-RRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQS  410 (1230)
T ss_dssp             -------------CTTHH-HHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC--
T ss_pred             hhhcccccccccccCHHH-HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccc
Confidence                      00000111 2222000       00          0112223334456788777777777765311    


Q ss_pred             -------------------cchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHhhhcCC-
Q psy16364        196 -------------------KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK------KTLMEIVKKLMVHMDKAEG-  249 (276)
Q Consensus       196 -------------------~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~------~n~~~iv~~l~~~l~~~~~-  249 (276)
                                         ...+...+.+...+++++..+|+.|+..+..++..      +.+..+++.+++-|..... 
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~  490 (1230)
T 1u6g_C          411 WLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSS  490 (1230)
T ss_dssp             ----------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSC
T ss_pred             cccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCc
Confidence                               12333444555569999999999999988665432      4567777777777765431 


Q ss_pred             chHHHHHHHHHHHHhcc
Q psy16364        250 TMYRDELLSKVIDICSQ  266 (276)
Q Consensus       250 ~~~~~~l~~~i~~~~~~  266 (276)
                      ...|.+.+..+..+++.
T Consensus       491 ~~v~~~a~~~l~~~~~~  507 (1230)
T 1u6g_C          491 SNLKIDALSCLYVILCN  507 (1230)
T ss_dssp             HHHHHHHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHHHHHh
Confidence            37788888888877653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=96.87  E-value=0.065  Score=51.41  Aligned_cols=64  Identities=8%  Similarity=0.024  Sum_probs=49.7

Q ss_pred             hHHHHHhhhcCCChhHHhhHHHHHHhhcCC----CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy16364         15 HRDLIMQCLDDKDESIRLRALDLLYGMVSK----KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICS   79 (276)
Q Consensus        15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~----~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~   79 (276)
                      -++.++++|.+++..++..++..+..++..    ......++.|++.|...++ +.|......+..++.
T Consensus       225 ~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~-~v~~~a~~aL~~L~~  292 (644)
T 2z6h_A          225 GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDI-NVVTCAAGILSNLTC  292 (644)
T ss_dssp             HHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCH-HHHHHHHHHHHHHHc
Confidence            467888999999999999999999999853    2456788999988875543 677766666666654

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=96.86  E-value=0.072  Score=52.86  Aligned_cols=235  Identities=11%  Similarity=0.053  Sum_probs=128.5

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHH-----HHHHHHHhhhhcCCchhHHHHHHHHHHHhhhc--CCc--
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQN--NYQ--   84 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~-----iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~--~y~--   84 (276)
                      ...+.++.++.++|+.++..|+..+..++.....+.     =++-|...++.. +...|..-+..++++.+..  +..  
T Consensus       290 G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~-~~~vr~~Al~~L~kl~s~~~~d~~~~  368 (810)
T 3now_A          290 GILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSK-NDGIRVRALVGLCKLGSYGGQDAAIR  368 (810)
T ss_dssp             THHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTTTTTTSCC
T ss_pred             chHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCC-CHHHHHHHHHHHHHhccccccCcccc
Confidence            567888999999999999999999999987644333     235566655533 3355655555555554311  111  


Q ss_pred             -cCCC-hhhHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhhhhHH------HHHHHHHHhhcCCCCCCCCCCchhhhh
Q psy16364         85 -YITN-FEWYMTVLVELTRMEG--TRHGALVAAQMMDVAIRVSAVRA------FAVAQMSSLLASPSPPLSQPSSRMAEM  154 (276)
Q Consensus        85 -~~~~-~~W~v~~ll~ll~~~~--~~~~~~i~~~l~~vi~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~~~~~~~  154 (276)
                       +... .+=++..+.+++.-.+  ........+-+..+.. .++.+.      -++..+..++...          .+.+
T Consensus       369 ~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~----------d~~i  437 (810)
T 3now_A          369 PFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLARGG----------NQSC  437 (810)
T ss_dssp             SSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTT----------CGGG
T ss_pred             chhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhCCC----------ChHH
Confidence             1000 1123444555555442  1222223333333322 122221      2444555665432          1356


Q ss_pred             hHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhC-c---------------cch--HHHHHHHHHHhcCCCHHH
Q psy16364        155 MFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTH-P---------------KSV--QSHRDLIMQCLDDKDESI  216 (276)
Q Consensus       155 L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~-~---------------~~~--~~~~~~i~~~l~~~D~~i  216 (276)
                      .+.++      |++|-.....+.+.+.-.+..+.+..... +               ..+  ......++.+|+++++++
T Consensus       438 ~~~al------~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~v  511 (810)
T 3now_A          438 LYGVV------TTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNS  511 (810)
T ss_dssp             HHHHH------HHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHH
T ss_pred             HHHHH------HHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHH
Confidence            67777      77776655333210000011111111100 0               000  123567788999999999


Q ss_pred             HHHHHHHHHhcCCc-chHHHH-----HHHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364        217 RLRALDLLYGMVSK-KTLMEI-----VKKLMVHMDKAEGTMYRDELLSKVIDICSQN  267 (276)
Q Consensus       217 q~ralell~~l~~~-~n~~~i-----v~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~  267 (276)
                      |..|...+..++.. ++...+     ++-|+.-|...+ ...|+.-+..+..+|...
T Consensus       512 qe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~-~~~k~~Aa~AL~nL~~~~  567 (810)
T 3now_A          512 QELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGT-EKGKRHATQALARIGITI  567 (810)
T ss_dssp             HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCC-HHHHHHHHHHHHHHhcCC
Confidence            99999999998754 444433     445666666555 478888888888887643

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=96.81  E-value=0.07  Score=49.21  Aligned_cols=243  Identities=8%  Similarity=0.063  Sum_probs=133.8

Q ss_pred             HhHHHHHhhhcC-CChhHHhhHHHHHHhhcCCC-cHH-----HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCC-cc
Q psy16364         14 SHRDLIMQCLDD-KDESIRLRALDLLYGMVSKK-TLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNY-QY   85 (276)
Q Consensus        14 ~~~~~I~~~L~d-~D~sIr~~aL~Ll~~l~~~~-n~~-----~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y-~~   85 (276)
                      ..++.+++.|.+ +|+.++..|+..+..++... +..     ..++.|++.|...+ ...+...+..+..++..++- .-
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~  137 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKM  137 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTHHH
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcchHH
Confidence            467788888864 59999999999999987643 222     25778888887655 37777777777777753110 00


Q ss_pred             CCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHH-----HHHHHHHHhhcCCCCCCCCCCchhhhhhH----
Q psy16364         86 ITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRA-----FAVAQMSSLLASPSPPLSQPSSRMAEMMF----  156 (276)
Q Consensus        86 ~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~~~~~~~L~----  156 (276)
                      ..-..=.+..+++++.-...........-+..+....++.+.     .++..+..++.+...         .....    
T Consensus       138 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~---------~~~~~~a~~  208 (529)
T 1jdh_A          138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY---------EKLLWTTSR  208 (529)
T ss_dssp             HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCC---------HHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCCh---------HHHHHHHHH
Confidence            000011234455544422111111111122222211111111     122233333322110         00000    


Q ss_pred             ------------HhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCc--cchHHHHHHHHHHhcCCCHHHHHHHHH
Q psy16364        157 ------------DEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHP--KSVQSHRDLIMQCLDDKDESIRLRALD  222 (276)
Q Consensus       157 ------------~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~--~~~~~~~~~i~~~l~~~D~~iq~rale  222 (276)
                                  ..+.+.++...+.+++...+...+.-++.++..++...+  .........++..|.+.|.++|..|..
T Consensus       209 ~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  288 (529)
T 1jdh_A          209 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG  288 (529)
T ss_dssp             HHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHH
Confidence                        011112233445555555555566667777777776543  234566788888999999999999999


Q ss_pred             HHHhcCCcc--hHHH-----HHHHHHHHhhhc-CCchHHHHHHHHHHHHhcc
Q psy16364        223 LLYGMVSKK--TLME-----IVKKLMVHMDKA-EGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       223 ll~~l~~~~--n~~~-----iv~~l~~~l~~~-~~~~~~~~l~~~i~~~~~~  266 (276)
                      .+..++..+  +.+.     .++.|+..|... +++..+...+..+..++..
T Consensus       289 ~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~  340 (529)
T 1jdh_A          289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  340 (529)
T ss_dssp             HHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence            998887643  4433     356667666553 3257778777777777654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=96.77  E-value=0.071  Score=52.37  Aligned_cols=93  Identities=11%  Similarity=0.072  Sum_probs=66.5

Q ss_pred             ccCCCchHHHHHHHHHHHHhhhCc-cc----hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--------cchHHHHHH
Q psy16364        172 SSRMPNHMKYLGLLAMSKILKTHP-KS----VQSHRDLIMQCLDDKDESIRLRALDLLYGMVS--------KKTLMEIVK  238 (276)
Q Consensus       172 ~~~~~~n~ryl~L~~l~~l~~~~~-~~----~~~~~~~i~~~l~~~D~~iq~ralell~~l~~--------~~n~~~iv~  238 (276)
                      +.+.+...|.-++.++..++...+ ..    .++....++.+|+|++..+|.+|...+-.++.        ...+..+++
T Consensus       375 l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~  454 (876)
T 1qgr_A          375 IKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQ  454 (876)
T ss_dssp             TTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHH
T ss_pred             ccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHH
Confidence            344556688888888888876433 32    34456667778899999999999998866653        367888888


Q ss_pred             HHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        239 KLMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       239 ~l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      .|++.+.. + +..|...+..+..+++.
T Consensus       455 ~l~~~l~~-~-~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          455 CLIEGLSA-E-PRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             HHHHHTTS-C-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcC-C-HHHHHHHHHHHHHHHHH
Confidence            88887755 2 57787777777666643

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=96.74  E-value=0.086  Score=42.36  Aligned_cols=99  Identities=17%  Similarity=0.114  Sum_probs=65.0

Q ss_pred             hhhhccccCCCchHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc--chHHH---
Q psy16364        166 IFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDDKDESIRLRALDLLYGMVSK--KTLME---  235 (276)
Q Consensus       166 ~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~D~~iq~ralell~~l~~~--~n~~~---  235 (276)
                      -.+-+++.+.+...+.-+..++..++..++...     ....+.++..|+++|..+|..|+..+..++..  ++.+.   
T Consensus        99 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~  178 (210)
T 4db6_A           99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE  178 (210)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            334444455555566666666666665443322     23467788899999999999999999888764  33322   


Q ss_pred             --HHHHHHHHhhhcCCchHHHHHHHHHHHHhc
Q psy16364        236 --IVKKLMVHMDKAEGTMYRDELLSKVIDICS  265 (276)
Q Consensus       236 --iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~  265 (276)
                        .++.|.+.+...+ +..|+.-...+..+++
T Consensus       179 ~g~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          179 AGALEKLEQLQSHEN-EKIQKEAQEALEKLQS  209 (210)
T ss_dssp             TTHHHHHHHGGGCSC-HHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHhCCC-HHHHHHHHHHHHHHhc
Confidence              3455666555444 5888888888887775

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=96.71  E-value=0.076  Score=54.78  Aligned_cols=221  Identities=11%  Similarity=0.146  Sum_probs=120.2

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC-------cHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKK-------TLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI   86 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~-------n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~   86 (276)
                      .....+++.+.++|..+|..|++-+.......       ....+++.|++.|...+ ...|..-+..+..+++    . .
T Consensus         6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~----~-~   79 (1230)
T 1u6g_C            6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVS----K-V   79 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHT----T-S
T ss_pred             hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHH----h-C
Confidence            44667888899999999999988777665432       35678888998887433 3666665555555554    1 1


Q ss_pred             CChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCC---CCCCCchhhhhhHHhhhccc
Q psy16364         87 TNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPP---LSQPSSRMAEMMFDEYSDRS  163 (276)
Q Consensus        87 ~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~~~~~~~L~~~~~~~~  163 (276)
                      ++ +.....+-.++...++.. ..              +|..+...+..+......-   ........++++-.      
T Consensus        80 ~~-~~~~~i~~~Ll~~l~d~~-~~--------------vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~------  137 (1230)
T 1u6g_C           80 KE-YQVETIVDTLCTNMLSDK-EQ--------------LRDISSIGLKTVIGELPPASSGSALAANVCKKITGR------  137 (1230)
T ss_dssp             CH-HHHHHHHHHHHHHTTCSS-SH--------------HHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHH------
T ss_pred             CH-HHHHHHHHHHHHHhcCCc-HH--------------HHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHH------
Confidence            12 211111111222222211 11              2222222222222111000   00000001222211      


Q ss_pred             cchhhhccccCCCchHHHHHHHHHHHHhhhCcc----chHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc---chHHHH
Q psy16364        164 SKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPK----SVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK---KTLMEI  236 (276)
Q Consensus       164 ~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~----~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~---~n~~~i  236 (276)
                         ++.-+.+..+...|.-++.++..++...+.    ..+.....++.+|.+++..+|.+|..-+..++..   .-+..+
T Consensus       138 ---L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~  214 (1230)
T 1u6g_C          138 ---LTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL  214 (1230)
T ss_dssp             ---HHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTH
T ss_pred             ---HHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence               112111134456788888889888865443    3456667777788999999999999988666543   223456


Q ss_pred             HHHHHHHhhhcCCchHHHHHHHHHHHHhc
Q psy16364        237 VKKLMVHMDKAEGTMYRDELLSKVIDICS  265 (276)
Q Consensus       237 v~~l~~~l~~~~~~~~~~~l~~~i~~~~~  265 (276)
                      ++.|++.|...++...|...+..+..+++
T Consensus       215 l~~l~~~L~~~~~~~~r~~a~~~l~~l~~  243 (1230)
T 1u6g_C          215 IEHLLSELSKNDSMSTTRTYIQCIAAISR  243 (1230)
T ss_dssp             HHHHHHHHHHTCSSCSCTTHHHHHHHHHH
T ss_pred             HHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence            77788877665433556555666655554

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=96.67  E-value=0.35  Score=47.42  Aligned_cols=66  Identities=9%  Similarity=0.061  Sum_probs=49.1

Q ss_pred             HHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC--------CCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy16364         12 VQSHRDLIMQCLDDKDESIRLRALDLLYGMVS--------KKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICS   79 (276)
Q Consensus        12 v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~--------~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~   79 (276)
                      +....+.++.+|+|+++.||..|+..+..++.        +.....+++.|++.+...  ...|......+..++.
T Consensus       406 ~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~  479 (876)
T 1qgr_A          406 VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE--PRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHH
Confidence            34557778889999999999999999988763        256788888888887652  3667666666655554

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=96.64  E-value=0.066  Score=42.94  Aligned_cols=152  Identities=16%  Similarity=0.130  Sum_probs=87.8

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCChhhHH
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYM   93 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~~~W~v   93 (276)
                      ...+.+.++|.|+|+.+|..|+..+..+.++..    ++.|.+.|...++ ..|...+..+..+..          +-.+
T Consensus        45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~----~~~L~~~l~d~~~-~vr~~a~~aL~~~~~----------~~~~  109 (201)
T 3ltj_A           45 RAVEPLIKALKDEDAWVRRAAADALGQIGDERA----VEPLIKALKDEDG-WVRQSAAVALGQIGD----------ERAV  109 (201)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG----HHHHHHHTTCSSH-HHHHHHHHHHHHHCC----------GGGH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH----HHHHHHHHcCCCH-HHHHHHHHHHHHhCc----------HHHH
Confidence            346788899999999999999999998876543    4555555554332 455544444432221          1122


Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhhcccc
Q psy16364         94 TVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSS  173 (276)
Q Consensus        94 ~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilGef~~  173 (276)
                      ..+.+++.   +               ..+.+|..++..+..+ ..            ++.+          ..+-+++.
T Consensus       110 ~~L~~~l~---d---------------~~~~vr~~a~~aL~~~-~~------------~~~~----------~~L~~~l~  148 (201)
T 3ltj_A          110 EPLIKALK---D---------------EDWFVRIAAAFALGEI-GD------------ERAV----------EPLIKALK  148 (201)
T ss_dssp             HHHHHHTT---C---------------SSHHHHHHHHHHHHHH-TC------------GGGH----------HHHHHHTT
T ss_pred             HHHHHHHc---C---------------CCHHHHHHHHHHHHHh-CC------------HHHH----------HHHHHHHc
Confidence            23333321   1               1123344444444333 11            1111          22333344


Q ss_pred             CCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy16364        174 RMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGM  227 (276)
Q Consensus       174 ~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l  227 (276)
                      +.+...|.-++.+|.++.      -+.....+...++|+|..+|..|.+.+-.+
T Consensus       149 d~~~~vr~~A~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          149 DEDGWVRQSAADALGEIG------GERVRAAMEKLAETGTGFARKVAVNYLETH  196 (201)
T ss_dssp             CSSHHHHHHHHHHHHHHC------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHhC------chhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            455567777777666652      245666777888999999999999998555

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=96.61  E-value=0.26  Score=44.26  Aligned_cols=89  Identities=13%  Similarity=0.084  Sum_probs=67.5

Q ss_pred             chHHHHHHHHHHHHhhhCcc-chHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc-------hHHHHHHHHHHHhhhcC
Q psy16364        177 NHMKYLGLLAMSKILKTHPK-SVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK-------TLMEIVKKLMVHMDKAE  248 (276)
Q Consensus       177 ~n~ryl~L~~l~~l~~~~~~-~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~-------n~~~iv~~l~~~l~~~~  248 (276)
                      .+.|..+..++..++...++ ..+.....+...+++++..+|.-|+..+-.++...       .+..+++.+++.|...+
T Consensus       342 ~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~  421 (462)
T 1ibr_B          342 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS  421 (462)
T ss_dssp             CSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSC
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46788888888888877653 44556777788899999999999999997777532       33567777777776555


Q ss_pred             CchHHHHHHHHHHHHhcc
Q psy16364        249 GTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       249 ~~~~~~~l~~~i~~~~~~  266 (276)
                       +..|..-+..+..+++.
T Consensus       422 -~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          422 -VVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             -HHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHh
Confidence             58998888888888775

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=96.59  E-value=0.47  Score=44.13  Aligned_cols=232  Identities=14%  Similarity=0.131  Sum_probs=120.4

Q ss_pred             hHHHHHhhhcCCChhHHhhHHHHHHhhcCCC-cHHH------HHHHHHHhhhhcCCc----hhHHHHHHHHHHHhhhcCC
Q psy16364         15 HRDLIMQCLDDKDESIRLRALDLLYGMVSKK-TLME------IVKKLMVHMDKAEGT----MYRDELLSKVIDICSQNNY   83 (276)
Q Consensus        15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~-n~~~------iv~~L~~~L~~~~~~----~~r~~li~~I~~~~~~~~y   83 (276)
                      -++.++++|.++|..|+..|+..|..++... ..+.      .++.|+..|...+..    .+.......+..+|...+ 
T Consensus       144 aIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~-  222 (510)
T 3ul1_B          144 AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN-  222 (510)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCS-
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhccc-
Confidence            4788999999999999999999999998542 3332      356677777654322    233334444555554211 


Q ss_pred             ccCCChhh---HHHHHHHHHHhcCCcchHHHHHHHHHHHHH----hhhhHH-----HHHHHHHHhhcCCCCCCCCCCchh
Q psy16364         84 QYITNFEW---YMTVLVELTRMEGTRHGALVAAQMMDVAIR----VSAVRA-----FAVAQMSSLLASPSPPLSQPSSRM  151 (276)
Q Consensus        84 ~~~~~~~W---~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~----~~~~~~-----~~~~~~~~ll~~~~~~~~~~~~~~  151 (276)
                       ...+...   .+..+.+++...    ..++...-...+..    .++...     -++..+..++...+          
T Consensus       223 -~~~~~~~~~~~lp~L~~LL~~~----~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~----------  287 (510)
T 3ul1_B          223 -PAPPLDAVEQILPTLVRLLHHN----DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE----------  287 (510)
T ss_dssp             -SCCCHHHHHHHHHHHHHHTTCS----CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC----------
T ss_pred             -chhHHHHHHhHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCC----------
Confidence             1112111   122333333221    12222222111111    000000     01222233332211          


Q ss_pred             hhhhHHhh-----------------hccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchH-----HHHHHHHHHh
Q psy16364        152 AEMMFDEY-----------------SDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQCL  209 (276)
Q Consensus       152 ~~~L~~~~-----------------~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~~l  209 (276)
                      .++...++                 .+.++.-.+-.++.+.+..+|.-+..++..++..++....     .....++..|
T Consensus       288 ~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL  367 (510)
T 3ul1_B          288 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL  367 (510)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHH
Confidence            11111111                 1222334455556666667788888888888765543222     2356678899


Q ss_pred             cCCCHHHHHHHHHHHHhcCCc---chHHHH-----HHHHHHHhhhcCCchHHHHHHHHHHHH
Q psy16364        210 DDKDESIRLRALDLLYGMVSK---KTLMEI-----VKKLMVHMDKAEGTMYRDELLSKVIDI  263 (276)
Q Consensus       210 ~~~D~~iq~ralell~~l~~~---~n~~~i-----v~~l~~~l~~~~~~~~~~~l~~~i~~~  263 (276)
                      ++.|..+|+.|.-.+..++..   +++..+     ++.|.+-|...+ ...+...+..+..+
T Consensus       368 ~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d-~~i~~~~L~aL~ni  428 (510)
T 3ul1_B          368 SKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD-TKIIQVILDAISNI  428 (510)
T ss_dssp             HSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence            999999999999888777643   333333     455666665555 46666555544443

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=96.30  E-value=0.096  Score=46.80  Aligned_cols=186  Identities=13%  Similarity=0.114  Sum_probs=99.0

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC---CcHHH-----HHHHHHHhhhhcCCchhHHHHHHHHHHHhhh-cCCc
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSK---KTLME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQ-NNYQ   84 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~---~n~~~-----iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~-~~y~   84 (276)
                      ..++.++++|.++|+.++..|...|..++..   +|-..     .++.|++.|....+.+.+...+..+..++.. ++.+
T Consensus       127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk  206 (354)
T 3nmw_A          127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK  206 (354)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence            3488999999999999999999999999753   22222     4788888765544446666666666665541 0111


Q ss_pred             c-CCChhhHHHHHHHHHHhcCCc----chHHHHHHHHHHHH---HhhhhHHH-----HHHHHHHhhcCCCCCCCCCCchh
Q psy16364         85 Y-ITNFEWYMTVLVELTRMEGTR----HGALVAAQMMDVAI---RVSAVRAF-----AVAQMSSLLASPSPPLSQPSSRM  151 (276)
Q Consensus        85 ~-~~~~~W~v~~ll~ll~~~~~~----~~~~i~~~l~~vi~---~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~~~~  151 (276)
                      - +....--+..|++++......    +......-+..+..   ..++.+..     ++..+..++....          
T Consensus       207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~----------  276 (354)
T 3nmw_A          207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS----------  276 (354)
T ss_dssp             HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC----------
T ss_pred             HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC----------
Confidence            0 000112344556666433221    11122222333322   12222221     2333344443211          


Q ss_pred             hhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy16364        152 AEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS  229 (276)
Q Consensus       152 ~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~  229 (276)
                      .++...++      |.++......+.+...+.        .      ......+.+.|++.+..+|+.|..-|..|+.
T Consensus       277 ~~v~~~A~------~aL~nLa~~~~~~~~~i~--------~------~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~  334 (354)
T 3nmw_A          277 LTIVSNAC------GTLWNLSARNPKDQEALW--------D------MGAVSMLKNLIHSKHKMIAMGSAAALRNLMA  334 (354)
T ss_dssp             HHHHHHHH------HHHHHHTSSCHHHHHHHH--------H------TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHH------HHHHHHhCCCHHHHHHHH--------H------CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence            34455555      666655432222222221        0      1224456678889999999999888877664

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=96.28  E-value=0.49  Score=41.03  Aligned_cols=194  Identities=11%  Similarity=0.130  Sum_probs=99.3

Q ss_pred             cccChhhHHHhHHHHHhhhcCCCh------------hHHhhHHHHHHhhcCC-CcHHH-----HHHHHHH-hhhhcCCch
Q psy16364          5 LKTHPKSVQSHRDLIMQCLDDKDE------------SIRLRALDLLYGMVSK-KTLME-----IVKKLMV-HMDKAEGTM   65 (276)
Q Consensus         5 ~~~~P~~v~~~~~~I~~~L~d~D~------------sIr~~aL~Ll~~l~~~-~n~~~-----iv~~L~~-~L~~~~~~~   65 (276)
                      ++-.|+-.+. ...++..|.++++            .-+..|++.+..++.. +|...     .++.|+. .|...+ ..
T Consensus        20 ~~~~~d~~~~-mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~-~~   97 (296)
T 1xqr_A           20 MRGQRGEVEQ-MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGA-AG   97 (296)
T ss_dssp             CCSCHHHHHH-HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSS-HH
T ss_pred             HcCCCCHHHH-HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCC-HH
Confidence            3333554333 4555667777632            4678899999999864 34333     4678888 666544 47


Q ss_pred             hHHHHHHHHHHHhhhcCCccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHH--hhhhHHHHHHHHHHhhcCCCCC
Q psy16364         66 YRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIR--VSAVRAFAVAQMSSLLASPSPP  143 (276)
Q Consensus        66 ~r~~li~~I~~~~~~~~y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~--~~~~~~~~~~~~~~ll~~~~~~  143 (276)
                      .|...+..+..++..     .+...+.   +++          ......+..++..  .++++..++..++.+....   
T Consensus        98 vr~~Aa~~Lg~ia~~-----n~~~~~~---vv~----------~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~---  156 (296)
T 1xqr_A           98 LRWRAAQLIGTCSQN-----VAAIQEQ---VLG----------LGALRKLLRLLDRDACDTVRVKALFAISCLVREQ---  156 (296)
T ss_dssp             HHHHHHHHHHHHHTT-----CHHHHHH---HHH----------TTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHhC-----CHHHHHH---HHH----------CCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCC---
Confidence            787777777766641     1111121   111          0112233333322  1233434444444433210   


Q ss_pred             CCCCCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcCCCHHHHH
Q psy16364        144 LSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDDKDESIRL  218 (276)
Q Consensus       144 ~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~D~~iq~  218 (276)
                              ++. .+++.+.++.-.+.+.+.+.+..++.-+..++..++.-++...     ......++..|.++|..+|.
T Consensus       157 --------~~~-~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~  227 (296)
T 1xqr_A          157 --------EAG-LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHE  227 (296)
T ss_dssp             --------HHH-HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHH
T ss_pred             --------cHH-HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHH
Confidence                    000 0000011222333333344444455555555555554443221     12456677889999999999


Q ss_pred             HHHHHHHhcCCc
Q psy16364        219 RALDLLYGMVSK  230 (276)
Q Consensus       219 ralell~~l~~~  230 (276)
                      .|+..+..++..
T Consensus       228 ~al~aL~~l~~~  239 (296)
T 1xqr_A          228 HVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhC
Confidence            999999777654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=95.99  E-value=1  Score=41.96  Aligned_cols=234  Identities=13%  Similarity=0.098  Sum_probs=121.7

Q ss_pred             hHHHHHhhhcCCChhHHhhHHHHHHhhcCCC-cHHH------HHHHHHHhhhhcCCc----hhHHHHHHHHHHHhhhcCC
Q psy16364         15 HRDLIMQCLDDKDESIRLRALDLLYGMVSKK-TLME------IVKKLMVHMDKAEGT----MYRDELLSKVIDICSQNNY   83 (276)
Q Consensus        15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~-n~~~------iv~~L~~~L~~~~~~----~~r~~li~~I~~~~~~~~y   83 (276)
                      -++.++.+|.++|+.++..|+..|..|+..+ ..+.      .++.|+..|...+..    .+....+..+..+|..   
T Consensus       163 aip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~---  239 (529)
T 3tpo_A          163 AIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN---  239 (529)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCC---
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhc---
Confidence            4788899999999999999999999998643 2222      356777777654322    2233344444455532   


Q ss_pred             ccCCChhhH-----HHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHH-----HHHHHHHHhhcCCCCCCCCCCchhhh
Q psy16364         84 QYITNFEWY-----MTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRA-----FAVAQMSSLLASPSPPLSQPSSRMAE  153 (276)
Q Consensus        84 ~~~~~~~W~-----v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~~~~~~  153 (276)
                       -.+..++.     +..+.+++......+......-+..+....++...     -++..+..++....          ..
T Consensus       240 -~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~----------~~  308 (529)
T 3tpo_A          240 -KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE----------LP  308 (529)
T ss_dssp             -CTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSC----------HH
T ss_pred             -ccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCC----------hh
Confidence             11112221     22333433322111111111112111111111000     01122223332211          11


Q ss_pred             hhHHhh-----------------hccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchH-----HHHHHHHHHhcC
Q psy16364        154 MMFDEY-----------------SDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQCLDD  211 (276)
Q Consensus       154 ~L~~~~-----------------~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~~l~~  211 (276)
                      +...++                 .+.++.-.+..++.+.+..++.-+..++..++.-++....     .....++..|.+
T Consensus       309 v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~  388 (529)
T 3tpo_A          309 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK  388 (529)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC
Confidence            111111                 1223344555666666677888888888888765543222     235667888999


Q ss_pred             CCHHHHHHHHHHHHhcCC---cchHHHH-----HHHHHHHhhhcCCchHHHHHHHHHHHH
Q psy16364        212 KDESIRLRALDLLYGMVS---KKTLMEI-----VKKLMVHMDKAEGTMYRDELLSKVIDI  263 (276)
Q Consensus       212 ~D~~iq~ralell~~l~~---~~n~~~i-----v~~l~~~l~~~~~~~~~~~l~~~i~~~  263 (276)
                      .+..+|+.|.-.+..++.   .+++..+     ++.|.+-|...| ...+.-.+..+..+
T Consensus       389 ~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d-~~i~~~~L~aL~ni  447 (529)
T 3tpo_A          389 ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD-TKIIQVILDAISNI  447 (529)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence            999999999988877764   3444443     455666665555 46666554444433

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=95.92  E-value=0.74  Score=39.89  Aligned_cols=65  Identities=17%  Similarity=0.223  Sum_probs=49.5

Q ss_pred             hHHHHHh-hhcCCChhHHhhHHHHHHhhcCCCc-HH------HHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy16364         15 HRDLIMQ-CLDDKDESIRLRALDLLYGMVSKKT-LM------EIVKKLMVHMDKAEGTMYRDELLSKVIDICS   79 (276)
Q Consensus        15 ~~~~I~~-~L~d~D~sIr~~aL~Ll~~l~~~~n-~~------~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~   79 (276)
                      -.+.++. +|.++++.||..|+..+-.++..+. ++      ..++.|++.|....+..+|...+..+..+|.
T Consensus        82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~  154 (296)
T 1xqr_A           82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR  154 (296)
T ss_dssp             HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence            3566788 9999999999999999999986432 21      3678888888754345788888888887774

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=95.91  E-value=0.21  Score=46.27  Aligned_cols=187  Identities=13%  Similarity=0.111  Sum_probs=101.4

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC---CcHHH-----HHHHHHHhhhhcCCchhHHHHHHHHHHHhhhc-CCc
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSK---KTLME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQN-NYQ   84 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~---~n~~~-----iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~-~y~   84 (276)
                      ..++.++++|.++|+.++..|...|..++..   +|-..     .++.|++.|....+...+...+..+..++..+ +.+
T Consensus       243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk  322 (458)
T 3nmz_A          243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK  322 (458)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence            4488999999999999999999999998763   22222     46788887655444466666666666555410 111


Q ss_pred             c-CCChhhHHHHHHHHHHhcCCc----chHHHHHHHHHHHH---HhhhhHHH-----HHHHHHHhhcCCCCCCCCCCchh
Q psy16364         85 Y-ITNFEWYMTVLVELTRMEGTR----HGALVAAQMMDVAI---RVSAVRAF-----AVAQMSSLLASPSPPLSQPSSRM  151 (276)
Q Consensus        85 ~-~~~~~W~v~~ll~ll~~~~~~----~~~~i~~~l~~vi~---~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~~~~  151 (276)
                      - +....--+..+.+++......    ...+...-+..+..   ..++.+..     ++..+..++....          
T Consensus       323 ~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~----------  392 (458)
T 3nmz_A          323 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS----------  392 (458)
T ss_dssp             HHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC----------
T ss_pred             HHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC----------
Confidence            0 000112344555666543221    11222223333322   22222221     2333444443221          


Q ss_pred             hhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc
Q psy16364        152 AEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK  230 (276)
Q Consensus       152 ~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~  230 (276)
                      .++...|+      |.++......+.+..++.        .      ......+.+.|++.|..+|+.|..-|..|+..
T Consensus       393 ~~v~~~A~------~aL~nLa~~~~~~~~~i~--------~------~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          393 LTIVSNAC------GTLWNLSARNPKDQEALW--------D------MGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             HHHHHHHH------HHHHHHHSSCHHHHHHHH--------H------HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHH------HHHHHHHcCCHHHHHHHH--------H------CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            34555566      666665432222222221        1      12345567788999999999999999777654

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=95.21  E-value=0.16  Score=42.11  Aligned_cols=93  Identities=4%  Similarity=0.038  Sum_probs=75.1

Q ss_pred             CCCchHHHHHHHHHHHHhhhCc----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCC
Q psy16364        174 RMPNHMKYLGLLAMSKILKTHP----KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEG  249 (276)
Q Consensus       174 ~~~~n~ryl~L~~l~~l~~~~~----~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~  249 (276)
                      ..+.+.+..++.++..++..-.    ...+.....++.++.|+...+|+.|.+.+..++...++..+++.+...|...+ 
T Consensus        68 d~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~-  146 (242)
T 2qk2_A           68 DSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKN-  146 (242)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSC-
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC-
Confidence            4555678888888888886533    23445567778888999999999999999999988889999999999988765 


Q ss_pred             chHHHHHHHHHHHHhccC
Q psy16364        250 TMYRDELLSKVIDICSQN  267 (276)
Q Consensus       250 ~~~~~~l~~~i~~~~~~~  267 (276)
                      +..|.+.+.-|..+++..
T Consensus       147 ~~vr~~~l~~l~~~l~~~  164 (242)
T 2qk2_A          147 PSVKSETALFIARALTRT  164 (242)
T ss_dssp             HHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHc
Confidence            599999999999976653

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=94.71  E-value=2.1  Score=37.91  Aligned_cols=65  Identities=12%  Similarity=0.106  Sum_probs=48.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhcC--CcchHHHHH-----HHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364        202 RDLIMQCLDDKDESIRLRALDLLYGMV--SKKTLMEIV-----KKLMVHMDKAEGTMYRDELLSKVIDICSQN  267 (276)
Q Consensus       202 ~~~i~~~l~~~D~~iq~ralell~~l~--~~~n~~~iv-----~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~  267 (276)
                      ...++..|++++.++|+.|.-.+..++  ++++.+.++     +.|.+-|... ++..|+.-+..+..++..+
T Consensus       265 i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          265 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCC
Confidence            466778899999999999999998888  466666664     3344433333 4588999888888888763

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=94.50  E-value=2.9  Score=38.51  Aligned_cols=65  Identities=12%  Similarity=0.121  Sum_probs=49.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhcC--CcchHHHHHHH-----HHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364        202 RDLIMQCLDDKDESIRLRALDLLYGMV--SKKTLMEIVKK-----LMVHMDKAEGTMYRDELLSKVIDICSQN  267 (276)
Q Consensus       202 ~~~i~~~l~~~D~~iq~ralell~~l~--~~~n~~~iv~~-----l~~~l~~~~~~~~~~~l~~~i~~~~~~~  267 (276)
                      ...++..|++.+.++|+.|.-.+..++  ++++.+.+++.     |.+-|. +.++..|+.-+..+..++..+
T Consensus       381 i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~-s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          381 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH-SKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCC
Confidence            456778899999999999999998887  56777766543     333333 344588999999999998764

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=94.47  E-value=0.36  Score=43.13  Aligned_cols=63  Identities=13%  Similarity=0.113  Sum_probs=42.5

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHH
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDI   77 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~   77 (276)
                      --...+.+=++|+++-||.-||..+..+..++-++.+.+.+.+-+....+ ..|...+-.+.++
T Consensus       104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~p-yVRk~A~l~~~kL  166 (355)
T 3tjz_B          104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVP-SVSSSALVSSLHL  166 (355)
T ss_dssp             GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHH
Confidence            34555666677888888888888888888888777777777666655544 5555444433333

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=93.64  E-value=3.5  Score=37.13  Aligned_cols=69  Identities=14%  Similarity=0.263  Sum_probs=53.6

Q ss_pred             cccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC--CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHh
Q psy16364          5 LKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK--KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDIC   78 (276)
Q Consensus         5 ~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~--~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~   78 (276)
                      +.++|+++.++.+.|+++-.|++..||+-..+++.+.+.+  +.+...++.|...|...++     .++.+++..+
T Consensus        54 l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~-----~V~K~~I~~~  124 (386)
T 3o2t_A           54 INKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENV-----NVVKKAILTM  124 (386)
T ss_dssp             HTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSH-----HHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHH
Confidence            5689999999999999999999999999999999998853  5567777777777663332     3455555444

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=93.61  E-value=4.2  Score=37.07  Aligned_cols=45  Identities=16%  Similarity=0.184  Sum_probs=35.9

Q ss_pred             HhHHHHHhhhc-CCChhHHhhHHHHHHhhcCCCcHH-----HHHHHHHHhh
Q psy16364         14 SHRDLIMQCLD-DKDESIRLRALDLLYGMVSKKTLM-----EIVKKLMVHM   58 (276)
Q Consensus        14 ~~~~~I~~~L~-d~D~sIr~~aL~Ll~~l~~~~n~~-----~iv~~L~~~L   58 (276)
                      .-++.++++|. ++|+.++..|...|..++.....+     ..++.|++.|
T Consensus        86 G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll  136 (457)
T 1xm9_A           86 NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRV  136 (457)
T ss_dssp             TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHH
Confidence            34788899999 889999999999999998653322     4678888887

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=92.94  E-value=5.8  Score=36.77  Aligned_cols=60  Identities=22%  Similarity=0.299  Sum_probs=54.0

Q ss_pred             cccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcC
Q psy16364          3 KILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAE   62 (276)
Q Consensus         3 ~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~   62 (276)
                      |.++..|++-++-++..+++.+|.|..||..|+.=+-.+|..+++..++.-|.+.|..-+
T Consensus        54 kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqtdd  113 (507)
T 3u0r_A           54 KFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTDD  113 (507)
T ss_dssp             HHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTCCC
T ss_pred             HHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhccc
Confidence            568899999999999999999999999999999999999988999999988887776433

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=92.36  E-value=3  Score=40.99  Aligned_cols=85  Identities=15%  Similarity=0.246  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHhhhCc----c----chH--HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch-H-HHH-----------
Q psy16364        180 KYLGLLAMSKILKTHP----K----SVQ--SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT-L-MEI-----------  236 (276)
Q Consensus       180 ryl~L~~l~~l~~~~~----~----~~~--~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n-~-~~i-----------  236 (276)
                      +|-++.||..|+....    +    .+.  ...+.+.++|.+.+..||+-|+|++..|+.... + +.+           
T Consensus       576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~r  655 (778)
T 3opb_A          576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRN  655 (778)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhcc
Confidence            8899999999998751    1    222  357888889999999999999999988875443 2 122           


Q ss_pred             HHHHHHHhhhcCCchHHHHHHHHHHHHhc
Q psy16364        237 VKKLMVHMDKAEGTMYRDELLSKVIDICS  265 (276)
Q Consensus       237 v~~l~~~l~~~~~~~~~~~l~~~i~~~~~  265 (276)
                      ++-|+..+.. ++...|+..+-.+..+++
T Consensus       656 L~lLV~Ll~s-~D~~~r~AAagALAnLts  683 (778)
T 3opb_A          656 FNILVKLLQL-SDVESQRAVAAIFANIAT  683 (778)
T ss_dssp             HHHHHHGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcC-CCHHHHHHHHHHHHHhcC
Confidence            3445555544 556888888877777653

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=91.39  E-value=2.2  Score=35.67  Aligned_cols=92  Identities=12%  Similarity=0.031  Sum_probs=68.8

Q ss_pred             CCchHHHHHHHHHHHHhhhCc--c----chHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc------h-HHHHHHHHH
Q psy16364        175 MPNHMKYLGLLAMSKILKTHP--K----SVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK------T-LMEIVKKLM  241 (276)
Q Consensus       175 ~~~n~ryl~L~~l~~l~~~~~--~----~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~------n-~~~iv~~l~  241 (276)
                      .....+..++.++..|+..-.  .    ........+++.++|...++|..|..-+.+++..-      . +..+++.|+
T Consensus        73 ~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~  152 (249)
T 2qk1_A           73 ANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDIL  152 (249)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHH
Confidence            334567888888888886432  2    23344567777889999999999887776665433      3 889999999


Q ss_pred             HHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364        242 VHMDKAEGTMYRDELLSKVIDICSQN  267 (276)
Q Consensus       242 ~~l~~~~~~~~~~~l~~~i~~~~~~~  267 (276)
                      ..|.... +..|.+.+.-|..+++..
T Consensus       153 ~~l~~k~-~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          153 EHMKHKT-PQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HHTTCSS-HHHHHHHHHHHHHHHHHC
T ss_pred             HHHcCCC-hHHHHHHHHHHHHHHHHc
Confidence            9998776 599999999999888764

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=91.27  E-value=4.6  Score=33.96  Aligned_cols=125  Identities=12%  Similarity=0.108  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCc-cchHHHHHH
Q psy16364        126 RAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHP-KSVQSHRDL  204 (276)
Q Consensus       126 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~-~~~~~~~~~  204 (276)
                      .-+|.+.+-.+++.+..        .++.+..++      ..+-.-+......++..+...+.++   .+ ...++....
T Consensus        92 al~A~r~L~~LLe~vpL--------~~~~y~Kl~------~aL~dlik~~~~il~~eaae~Lgkl---kv~~~~~~V~~~  154 (265)
T 3b2a_A           92 TIKALRALGYLVKDVPM--------GSKTFLKAA------KTLVSLLESPDDMMRIETIDVLSKL---QPLEDSKLVRTY  154 (265)
T ss_dssp             HHHHHHHHHHHHTTCCB--------CHHHHHHHH------HHHHHHTTSCCHHHHHHHHHHHHHC---CBSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCC--------CHHHHHHHH------HHHHHHhcCCCchHHHHHHHHhCcC---CcccchHHHHHH
Confidence            34566777777776532        123333333      3333333444444555555666666   33 446788899


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhcCCc----chHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhccCC
Q psy16364        205 IMQCLDDKDESIRLRALDLLYGMVSK----KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNN  268 (276)
Q Consensus       205 i~~~l~~~D~~iq~ralell~~l~~~----~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~~  268 (276)
                      +...+.++|..+|--|+-++..|.+.    +.+++|++++-..|..-| +..++--...+..+..+.-
T Consensus       155 l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD-~~l~e~aLd~Le~ils~pi  221 (265)
T 3b2a_A          155 INELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDN-EFIVELALDVLEKALSFPL  221 (265)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSC-HHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCcc
Confidence            99999999999999999999888765    459999999887776664 5777777777766666543

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=90.57  E-value=0.93  Score=33.62  Aligned_cols=77  Identities=9%  Similarity=0.085  Sum_probs=48.3

Q ss_pred             cCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCCchH
Q psy16364        173 SRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMY  252 (276)
Q Consensus       173 ~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~~~~  252 (276)
                      .+.+...|..+..+|.++..      +.....+..+|+|+|..+|..|.+-+-.+.++    ..++.|.+.+...+ +..
T Consensus        52 ~d~~~~vR~~A~~aL~~~~~------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~----~a~~~L~~~l~d~~-~~v  120 (131)
T 1te4_A           52 SNEDWRIRGAAAWIIGNFQD------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE----RVRAAMEKLAETGT-GFA  120 (131)
T ss_dssp             GCSCHHHHHHHHHHHGGGCS------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSH----HHHHHHHHHTTSCC-THH
T ss_pred             cCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----HHHHHHHHHHhCCC-HHH
Confidence            33344455555555554432      23456677788899999999999999776643    34556666665444 477


Q ss_pred             HHHHHHHH
Q psy16364        253 RDELLSKV  260 (276)
Q Consensus       253 ~~~l~~~i  260 (276)
                      |...+..+
T Consensus       121 r~~A~~aL  128 (131)
T 1te4_A          121 RKVAVNYL  128 (131)
T ss_dssp             HHHHHHHG
T ss_pred             HHHHHHHH
Confidence            76655443

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=90.15  E-value=13  Score=35.30  Aligned_cols=65  Identities=9%  Similarity=0.054  Sum_probs=49.6

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC--cHH-----HHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKK--TLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICS   79 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~--n~~-----~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~   79 (276)
                      .-++.++++|..+|+.++..|...+..++..+  |-.     ..||.|++.|...+ ...+...+..+..++.
T Consensus        48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~  119 (584)
T 3l6x_A           48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISF  119 (584)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTS
T ss_pred             ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHc
Confidence            44788999999999999999999999888532  222     24788998887654 4778777777777764

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=89.77  E-value=18  Score=36.41  Aligned_cols=223  Identities=14%  Similarity=0.128  Sum_probs=126.3

Q ss_pred             hHHHHHhhhcCCChhHH-hhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCChhhHH
Q psy16364         15 HRDLIMQCLDDKDESIR-LRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYM   93 (276)
Q Consensus        15 ~~~~I~~~L~d~D~sIr-~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~~~W~v   93 (276)
                      -.+.+..+|.|++..++ ..|+.|-.-++-..|- ..+..|+.++.......+|+-+...+.-+..    .-....+=++
T Consensus       473 v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-~ai~~LL~~~~e~~~e~vrR~aalgLGll~~----g~~e~~~~li  547 (963)
T 4ady_A          473 VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-EAIHDMFTYSQETQHGNITRGLAVGLALINY----GRQELADDLI  547 (963)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT----TCGGGGHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHhhhC----CChHHHHHHH
Confidence            35667778877765444 3333333333344442 4556777766555455666665555553321    0000111111


Q ss_pred             HHH--------------HHHHHhcCCcchHHHHHHHHHHHHHh--hhhHHHHHHHHHHhh-cCCCCCCCCCCchhhhhhH
Q psy16364         94 TVL--------------VELTRMEGTRHGALVAAQMMDVAIRV--SAVRAFAVAQMSSLL-ASPSPPLSQPSSRMAEMMF  156 (276)
Q Consensus        94 ~~l--------------l~ll~~~~~~~~~~i~~~l~~vi~~~--~~~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~~L~  156 (276)
                      ..+              .--+.+.|.. .....+.+...+...  +.+|..++..+..+. .+.            +...
T Consensus       548 ~~L~~~~dp~vRygaa~alglAyaGTG-n~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~------------e~v~  614 (963)
T 4ady_A          548 TKMLASDESLLRYGGAFTIALAYAGTG-NNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY------------TTVP  614 (963)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHTTTSC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC------------SSHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH------------HHHH
Confidence            111              1112223433 245566677776643  457777777777553 221            1111


Q ss_pred             HhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC----Ccc-
Q psy16364        157 DEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMV----SKK-  231 (276)
Q Consensus       157 ~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~----~~~-  231 (276)
                               -+++-+.++.++.+||-+-.+|..+..-+|  .++..+++...+.|+|..+||-|..-+ +++    +.. 
T Consensus       615 ---------rlv~~L~~~~d~~VR~gAalALGli~aGn~--~~~aid~L~~L~~D~d~~Vrq~Ai~AL-G~Ig~gtnna~  682 (963)
T 4ady_A          615 ---------RIVQLLSKSHNAHVRCGTAFALGIACAGKG--LQSAIDVLDPLTKDPVDFVRQAAMIAL-SMILIQQTEKL  682 (963)
T ss_dssp             ---------HHTTTGGGCSCHHHHHHHHHHHHHHTSSSC--CHHHHHHHHHHHTCSSHHHHHHHHHHH-HHHSTTCCTTT
T ss_pred             ---------HHHHHHHhcCCHHHHHHHHHHHHHhccCCC--cHHHHHHHHHHccCCCHHHHHHHHHHH-HHHhcCCcccc
Confidence                     223444455677899988887777665444  356677888889999999999999887 332    222 


Q ss_pred             --hHHHHHHHHHHHhhhc-CC--chHHHHHHHHHHHHhccC
Q psy16364        232 --TLMEIVKKLMVHMDKA-EG--TMYRDELLSKVIDICSQN  267 (276)
Q Consensus       232 --n~~~iv~~l~~~l~~~-~~--~~~~~~l~~~i~~~~~~~  267 (276)
                        .+..+.+.|.++.... ++  .-|---++..|..+...+
T Consensus       683 ~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n  723 (963)
T 4ady_A          683 NPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRN  723 (963)
T ss_dssp             CTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGT
T ss_pred             chHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCc
Confidence              5778888888887532 12  367778888888766553

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=89.00  E-value=2.1  Score=39.10  Aligned_cols=66  Identities=11%  Similarity=0.201  Sum_probs=52.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhcCC--cchHHHH-----HHHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364        202 RDLIMQCLDDKDESIRLRALDLLYGMVS--KKTLMEI-----VKKLMVHMDKAEGTMYRDELLSKVIDICSQN  267 (276)
Q Consensus       202 ~~~i~~~l~~~D~~iq~ralell~~l~~--~~n~~~i-----v~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~  267 (276)
                      .+.++.+|++++.++|..|.--|..|+.  ++|-..|     ++.|++.|..+.+++.++..+..+..++..+
T Consensus        46 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~  118 (457)
T 1xm9_A           46 ICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD  118 (457)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH
Confidence            5667789999999999999999988873  5776666     5678888874444699999999998888764

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=88.44  E-value=20  Score=35.20  Aligned_cols=65  Identities=8%  Similarity=0.140  Sum_probs=45.5

Q ss_pred             hHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHH------HHHHHHHHhhhhcCCc--hhHHHHHHHHHHHhh
Q psy16364         15 HRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLM------EIVKKLMVHMDKAEGT--MYRDELLSKVIDICS   79 (276)
Q Consensus        15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~------~iv~~L~~~L~~~~~~--~~r~~li~~I~~~~~   79 (276)
                      -++.+..++..++++++..|+..+..++.....+      ..++.|+..|....+.  ..|......+.++..
T Consensus       458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLli  530 (778)
T 3opb_A          458 LISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLI  530 (778)
T ss_dssp             HHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHh
Confidence            4567788899999999999999999998654322      2467788887654331  256666666766654

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=87.20  E-value=2.7  Score=32.98  Aligned_cols=38  Identities=26%  Similarity=0.360  Sum_probs=29.8

Q ss_pred             ccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364          6 KTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS   43 (276)
Q Consensus         6 ~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~   43 (276)
                      +..|+-..+-...|.+-|.++++.+...||.|+-.++.
T Consensus        44 ~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vk   81 (163)
T 1x5b_A           44 GSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVA   81 (163)
T ss_dssp             HHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             hCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            33444445666677788899999999999999999985

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=86.67  E-value=20  Score=36.23  Aligned_cols=67  Identities=12%  Similarity=0.262  Sum_probs=49.3

Q ss_pred             chHHHHHHHHHHhcCCCHHHHHHHHHHH---HhcC-CcchHHHHHHHHHHHhhhc----CCchHHHHHHHHHHHH
Q psy16364        197 SVQSHRDLIMQCLDDKDESIRLRALDLL---YGMV-SKKTLMEIVKKLMVHMDKA----EGTMYRDELLSKVIDI  263 (276)
Q Consensus       197 ~~~~~~~~i~~~l~~~D~~iq~ralell---~~l~-~~~n~~~iv~~l~~~l~~~----~~~~~~~~l~~~i~~~  263 (276)
                      .+.-....+...|+++..+++|++.=.+   ++|+ |+..+++.++.|++-+.+.    .+++-|+--...+..+
T Consensus       248 ~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l  322 (986)
T 2iw3_A          248 TLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL  322 (986)
T ss_dssp             HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            3445667788899999999999997665   4555 5788999999999999762    2357776655554444

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=85.70  E-value=3.4  Score=30.42  Aligned_cols=40  Identities=18%  Similarity=0.237  Sum_probs=23.9

Q ss_pred             HHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhh
Q psy16364         16 RDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMD   59 (276)
Q Consensus        16 ~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~   59 (276)
                      .+.+.++|+|+|+.||..|+..+-.+.++    ..++.|.+.|.
T Consensus        44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~~----~a~~~L~~~L~   83 (131)
T 1te4_A           44 FEPLLESLSNEDWRIRGAAAWIIGNFQDE----RAVEPLIKLLE   83 (131)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHGGGCSH----HHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHc
Confidence            35566677777777777777766665542    33444554443

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=85.41  E-value=7.8  Score=35.88  Aligned_cols=70  Identities=21%  Similarity=0.258  Sum_probs=59.0

Q ss_pred             chHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhh
Q psy16364        177 NHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK  246 (276)
Q Consensus       177 ~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~  246 (276)
                      ...|-++=.-+.+..+.+|+...+..+..++...|.|+.||.-|..-|..+|..+++..+++-|.+-|..
T Consensus        42 ~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqt  111 (507)
T 3u0r_A           42 TKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQT  111 (507)
T ss_dssp             HHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhc
Confidence            4577777777888888899988888999999999999999999999999999888888888877666553

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=85.09  E-value=3.5  Score=31.47  Aligned_cols=73  Identities=16%  Similarity=0.227  Sum_probs=45.8

Q ss_pred             cccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC--cH------HHHHHHHHHhhhhcCCchhHHHHHHHHHH
Q psy16364          5 LKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK--TL------MEIVKKLMVHMDKAEGTMYRDELLSKVID   76 (276)
Q Consensus         5 ~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~--n~------~~iv~~L~~~L~~~~~~~~r~~li~~I~~   76 (276)
                      ++..|+--.+-...|.+-|.++++.+...||.|+-.++..-  .+      ++++.+|.+.+.+.. ...+..++.-|..
T Consensus        33 I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~-~~Vk~kil~li~~  111 (140)
T 3ldz_A           33 VGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGH-PKVCEKLKALMVE  111 (140)
T ss_dssp             HTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSC-HHHHHHHHHHHHH
T ss_pred             HHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCC-HHHHHHHHHHHHH
Confidence            34555555666777888899999999999999999987431  11      445556555554332 2444444444443


Q ss_pred             Hh
Q psy16364         77 IC   78 (276)
Q Consensus        77 ~~   78 (276)
                      -.
T Consensus       112 W~  113 (140)
T 3ldz_A          112 WT  113 (140)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=85.05  E-value=33  Score=34.19  Aligned_cols=70  Identities=7%  Similarity=0.041  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHHHhhh-CccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-----------------chHHHHHHH
Q psy16364        178 HMKYLGLLAMSKILKT-HPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK-----------------KTLMEIVKK  239 (276)
Q Consensus       178 n~ryl~L~~l~~l~~~-~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~-----------------~n~~~iv~~  239 (276)
                      -+|+-++.++.+++.. .++..+.....++.+|.|++.-+|..|.--+..++..                 +-+..+++.
T Consensus       473 ~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~  552 (960)
T 1wa5_C          473 ILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKN  552 (960)
T ss_dssp             HHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHH
T ss_pred             eehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHH
Confidence            4566666666666554 2344556667788899999999999999988776642                 235666666


Q ss_pred             HHHHhhhc
Q psy16364        240 LMVHMDKA  247 (276)
Q Consensus       240 l~~~l~~~  247 (276)
                      |+.-+...
T Consensus       553 L~~ll~~~  560 (960)
T 1wa5_C          553 LIALILKH  560 (960)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhc
Confidence            66665553

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=84.76  E-value=11  Score=31.35  Aligned_cols=97  Identities=9%  Similarity=0.078  Sum_probs=63.0

Q ss_pred             cccCCCc--hHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--cchHHHH-----
Q psy16364        171 FSSRMPN--HMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDDKDESIRLRALDLLYGMVS--KKTLMEI-----  236 (276)
Q Consensus       171 f~~~~~~--n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~D~~iq~ralell~~l~~--~~n~~~i-----  236 (276)
                      ++.+.+.  ..+..+..++..++..++...     ..-...+++.|++++.++|+.|..-|..++.  ++|-..|     
T Consensus        16 lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~Ga   95 (233)
T 3tt9_A           16 MLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNG   95 (233)
T ss_dssp             TCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred             HhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence            3444444  445555555656555443221     1235678889999999999999999988874  4565554     


Q ss_pred             HHHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364        237 VKKLMVHMDKAEGTMYRDELLSKVIDICSQN  267 (276)
Q Consensus       237 v~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~  267 (276)
                      ++.|++-|..+.+.+.++..+..+..++..+
T Consensus        96 I~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~  126 (233)
T 3tt9_A           96 VPRLLQVLKQTRDLETKKQITGLLWNLSSND  126 (233)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHcCh
Confidence            5567777765433578888877777776543

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=83.83  E-value=22  Score=31.26  Aligned_cols=139  Identities=19%  Similarity=0.233  Sum_probs=83.2

Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHH--------HHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchh
Q psy16364         96 LVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAV--------AQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIF  167 (276)
Q Consensus        96 ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~--------~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~i  167 (276)
                      +++....++-++..+.-..+.+++.+++++-.+..        ..+-.+++..+.          =+-+++.      -.
T Consensus       169 fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NY----------VTkRQSl------KL  232 (341)
T 1upk_A          169 FFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENY----------VTKRQSL------KL  232 (341)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSH----------HHHHHHH------HH
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcc----------hhHHHHH------HH
Confidence            44444444444556667788888888765432211        222233333211          1234444      67


Q ss_pred             hhccccCCCch---HHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHH-HhcCCcchHHHHHH-----
Q psy16364        168 NIKFSSRMPNH---MKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLL-YGMVSKKTLMEIVK-----  238 (276)
Q Consensus       168 lGef~~~~~~n---~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell-~~l~~~~n~~~iv~-----  238 (276)
                      +||++....|.   .||++              -+++...++..|+|+.-.||-.|.... .-.+|++.-.+|++     
T Consensus       233 LgelLldr~N~~vM~~Yis--------------~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~N  298 (341)
T 1upk_A          233 LGELLLDRHNFTIMTKYIS--------------KPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKN  298 (341)
T ss_dssp             HHHHHHSGGGHHHHHHHTT--------------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHT
T ss_pred             HHHHHhCchHHHHHHHHhC--------------CHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHH
Confidence            78877666552   34433              357888899999999999999999986 23357655555554     


Q ss_pred             --HHHHHhhh-----cCCchHHHH---HHHHHHHHh
Q psy16364        239 --KLMVHMDK-----AEGTMYRDE---LLSKVIDIC  264 (276)
Q Consensus       239 --~l~~~l~~-----~~~~~~~~~---l~~~i~~~~  264 (276)
                        +|+.||..     .+|+.|.+|   ++..|..+-
T Consensus       299 r~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~L~  334 (341)
T 1upk_A          299 QAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLK  334 (341)
T ss_dssp             HHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHhCC
Confidence              34555533     356688888   666665553

>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}

Probab=83.55  E-value=20  Score=37.45  Aligned_cols=118  Identities=16%  Similarity=0.160  Sum_probs=81.1

Q ss_pred             hHHHHHHHHHHHHHhh-hhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHH
Q psy16364        108 GALVAAQMMDVAIRVS-AVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLA  186 (276)
Q Consensus       108 ~~~i~~~l~~vi~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~  186 (276)
                      ++++.+.+.+++...| .++..++..+-+++.+.+         .+.+.          ..+.+.+.. ++.+.--.|++
T Consensus       155 ~~~l~~ki~~vl~vap~~lQ~diI~sLPeIl~ds~---------H~~v~----------~~L~~lL~~-~~~L~~~iLda  214 (1323)
T 3s4w_B          155 GKDLTAQMMQLISVAPVNLQHDFITSLPEILGDSQ---------HANVG----------KELGELLVQ-NTSLTVPILDV  214 (1323)
T ss_dssp             HHHHHHHHHHHHHHSCTTTHHHHHHTHHHHSCGGG---------HHHHH----------HHHHHHHHH-CSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHhHHHhcchh---------hHHHH----------HHHHHHHhc-CcchHHHHHHH
Confidence            4678888888887766 566666666666654321         12222          223333332 34466667777


Q ss_pred             HHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhh
Q psy16364        187 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK  246 (276)
Q Consensus       187 l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~  246 (276)
                      |..| ..+++...+.++.+++.|.+.+.+.==-...++..-++.+|+.++|.+|-+.|.-
T Consensus       215 Ls~L-~Ls~~~l~~vr~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~~L~~  273 (1323)
T 3s4w_B          215 FSSL-RLDPNFLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELRENLNV  273 (1323)
T ss_dssp             HHHS-CCCHHHHHHHHHHHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHC
T ss_pred             HHcC-CCCHHHHHHHHHHHHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHHHHHcCc
Confidence            7776 5578888899999999999877766666677777778899999999999987743

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=82.30  E-value=32  Score=34.66  Aligned_cols=69  Identities=13%  Similarity=0.181  Sum_probs=45.5

Q ss_pred             chHHHHHHHHHHHHh---hhCccchHHHHHHHHH--HhcCCCHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHhh
Q psy16364        177 NHMKYLGLLAMSKIL---KTHPKSVQSHRDLIMQ--CLDDKDESIRLRALDLLYGMVSK------KTLMEIVKKLMVHMD  245 (276)
Q Consensus       177 ~n~ryl~L~~l~~l~---~~~~~~~~~~~~~i~~--~l~~~D~~iq~ralell~~l~~~------~n~~~iv~~l~~~l~  245 (276)
                      +-+|+....++.+..   ..+|...+.....++.  .+.+++..+|.||.-.+..+|..      +-+..|+..+-+.|.
T Consensus       509 p~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~  588 (980)
T 3ibv_A          509 PLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLN  588 (980)
T ss_dssp             HHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhc
Confidence            345665555554433   3467777888888888  88889999999999998777532      334555555544444

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=80.86  E-value=9.5  Score=31.48  Aligned_cols=37  Identities=19%  Similarity=0.282  Sum_probs=28.9

Q ss_pred             cChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364          7 THPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS   43 (276)
Q Consensus         7 ~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~   43 (276)
                      ..|+--.+-...|.+-|.++++.+...||.|+-.++.
T Consensus        38 ~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vk   74 (226)
T 3zyq_A           38 QGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVK   74 (226)
T ss_dssp             TTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            3344445666677788899999999999999999884

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=80.81  E-value=11  Score=28.98  Aligned_cols=39  Identities=15%  Similarity=0.147  Sum_probs=30.9

Q ss_pred             cccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364          5 LKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS   43 (276)
Q Consensus         5 ~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~   43 (276)
                      ++..|+--.+-...|.+-|.++++.+...||.|+-.++.
T Consensus        39 I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvk   77 (149)
T 3g2s_A           39 LNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMK   77 (149)
T ss_dssp             GGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            344555555666777888999999999999999999884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	276
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	9e-21
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-15
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	3e-17
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	5e-13

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.76
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.74
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.66
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.53
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.76
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	97.71
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.59
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	97.34
d1b3ua_	588	Constant regulatory domain of protein phosphatase	97.22
d1b3ua_	588	Constant regulatory domain of protein phosphatase	97.19
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.19
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.19
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.16
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.94
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	96.62
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	96.62
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	96.45
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	96.33
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	96.11
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.02
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	95.67
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.32
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	92.88
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	92.53
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	90.61
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	90.0
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	86.77
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	82.31
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	81.98
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	81.35
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	81.21

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=0.0052  Score=49.38  Aligned_cols=55  Identities=16%  Similarity=0.094  Sum_probs=40.7

Q ss_pred             HHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Q psy16364         16 RDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVI   75 (276)
Q Consensus        16 ~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~   75 (276)
                      .+.+.++|+|+|+.||..|+..|..+-+    ...++.|++.+...++ ..|...+..+.
T Consensus        21 ~~~L~~~L~d~~~~vR~~A~~~L~~~~~----~~~~~~l~~~l~d~~~-~vr~~a~~aL~   75 (276)
T d1oyza_          21 DDELFRLLDDHNSLKRISSARVLQLRGG----QDAVRLAIEFCSDKNY-IRRDIGAFILG   75 (276)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC----HHHHHHHHHHHTCSSH-HHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhhCC----HhHHHHHHHHHcCCCH-HHHHHHHHHHH
Confidence            4568899999999999999999988765    3566777777765543 66665555444

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.0011  Score=59.30  Aligned_cols=233  Identities=7%  Similarity=0.047  Sum_probs=133.2

Q ss_pred             hHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc-------HHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCC
Q psy16364         11 SVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT-------LMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNY   83 (276)
Q Consensus        11 ~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n-------~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y   83 (276)
                      +...-++.++++|++.|..++..|+..+..++..+.       ...+|+.|++.|....+.+.+...+..+..++..+  
T Consensus        14 ~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~--   91 (529)
T d1jdha_          14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR--   91 (529)
T ss_dssp             ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH--
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--
Confidence            334558889999999999999999999999986432       13578899988887665567777777676666421  


Q ss_pred             ccCCChhhH-----HHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHH-----HHHHHHHHhhcCCCCCCCCCCchhhh
Q psy16364         84 QYITNFEWY-----MTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRA-----FAVAQMSSLLASPSPPLSQPSSRMAE  153 (276)
Q Consensus        84 ~~~~~~~W~-----v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~~~~~~  153 (276)
                         ....+.     +..+++++.............-+.++....+..+.     .++..+..++...+          ++
T Consensus        92 ---~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~----------~~  158 (529)
T d1jdha_          92 ---EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN----------VK  158 (529)
T ss_dssp             ---HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC----------HH
T ss_pred             ---hhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccC----------hH
Confidence               111111     35555555432222223334445555544333222     24555666665421          34


Q ss_pred             hhHHhhhccccchhhhccccCCCc------------------------hHHHHHHHHHHHHhhhCccchH-----HHHHH
Q psy16364        154 MMFDEYSDRSSKIFNIKFSSRMPN------------------------HMKYLGLLAMSKILKTHPKSVQ-----SHRDL  204 (276)
Q Consensus       154 ~L~~~~~~~~~~~ilGef~~~~~~------------------------n~ryl~L~~l~~l~~~~~~~~~-----~~~~~  204 (276)
                      +...++      |.++......+.                        ..+.-+..++..+.. +++...     ...+.
T Consensus       159 ~~~~a~------~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~  231 (529)
T d1jdha_         159 FLAITT------DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQA  231 (529)
T ss_dssp             HHHHHH------HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHH
T ss_pred             HHHHHH------HHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc-cccccchhhhhhhhhh
Confidence            444555      555554332221                        122222222322221 222211     22456


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhcCCc----chHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        205 IMQCLDDKDESIRLRALDLLYGMVSK----KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       205 i~~~l~~~D~~iq~ralell~~l~~~----~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      +...+.+++.+++..|+..+..+.+.    .....+++.|++.+...+ ...+...+..+..++..
T Consensus       232 L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~-~~~~~~a~~~L~~l~~~  296 (529)
T d1jdha_         232 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD-INVVTCAAGILSNLTCN  296 (529)
T ss_dssp             HHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTT
T ss_pred             HHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhccccc-HHHHHHHHHHHHhhccc
Confidence            67788889999999888887655433    233567788887776555 47777777666666643

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.0012  Score=64.76  Aligned_cols=223  Identities=13%  Similarity=0.136  Sum_probs=122.9

Q ss_pred             hHHHHHhhhcCCChhHHhhHHHHHHhhcCC-------CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCC
Q psy16364         15 HRDLIMQCLDDKDESIRLRALDLLYGMVSK-------KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYIT   87 (276)
Q Consensus        15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~-------~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~   87 (276)
                      ++..+++.+.|+|+.+|..|++-+....++       +..+.+++.|++.|....+ +.|...+..+..++.     +.+
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~-~Vq~~A~k~l~~l~~-----~~~   77 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNG-EVQNLAVKCLGPLVS-----KVK   77 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHHHT-----TSC
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHH-----hCc
Confidence            567788899999999999999877766543       2367899999998876554 677666655555543     222


Q ss_pred             C--hhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccc
Q psy16364         88 N--FEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSK  165 (276)
Q Consensus        88 ~--~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~  165 (276)
                      +  .+.++..++..+.-............+..+               ..-+....  .+..  -...+.....      
T Consensus        78 ~~~~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i---------------~~~l~~~~--~~~~--~~~~~~~~l~------  132 (1207)
T d1u6gc_          78 EYQVETIVDTLCTNMLSDKEQLRDISSIGLKTV---------------IGELPPAS--SGSA--LAANVCKKIT------  132 (1207)
T ss_dssp             HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHH---------------HHHCC-------CC--THHHHHHHHH------
T ss_pred             HhhHHHHHHHHHHHhcCCchhhhHHHHHHHHHH---------------HHhccccc--ccch--hHHHHHHHHH------
Confidence            1  122233332222111111000001111111               11111100  0000  0111222211      


Q ss_pred             hhhhc-cccCCCchHHHHHHHHHHHHhhhCccchH----HHHHHHHHHhcCCCHHHHHHHHHHHHhcCC---cchHHHHH
Q psy16364        166 IFNIK-FSSRMPNHMKYLGLLAMSKILKTHPKSVQ----SHRDLIMQCLDDKDESIRLRALDLLYGMVS---KKTLMEIV  237 (276)
Q Consensus       166 ~ilGe-f~~~~~~n~ryl~L~~l~~l~~~~~~~~~----~~~~~i~~~l~~~D~~iq~ralell~~l~~---~~n~~~iv  237 (276)
                      ..+.. .....+...+.-++..+..++...+....    ...+.++..|++++..+|+||..-+..+..   .+-+..++
T Consensus       133 ~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~  212 (1207)
T d1u6gc_         133 GRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLI  212 (1207)
T ss_dssp             HHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHH
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            11222 22334456777788888888887765443    345555667889999999999998865543   34456688


Q ss_pred             HHHHHHhhhcCCchHHHHHHHHHHHHhccCC
Q psy16364        238 KKLMVHMDKAEGTMYRDELLSKVIDICSQNN  268 (276)
Q Consensus       238 ~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~~  268 (276)
                      +.++..+........|...+..+..++....
T Consensus       213 ~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~  243 (1207)
T d1u6gc_         213 EHLLSELSKNDSMSTTRTYIQCIAAISRQAG  243 (1207)
T ss_dssp             HHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHHcc
Confidence            8888888665444556666666666665543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.026  Score=45.71  Aligned_cols=173  Identities=13%  Similarity=0.113  Sum_probs=101.8

Q ss_pred             ChhHHhhHHHHHHhhcCC-CcHHHH-----HHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCChhhHHHHHHHHH
Q psy16364         27 DESIRLRALDLLYGMVSK-KTLMEI-----VKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELT  100 (276)
Q Consensus        27 D~sIr~~aL~Ll~~l~~~-~n~~~i-----v~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~~~W~v~~ll~ll  100 (276)
                      |...+..|++.+..++.. +|...+     ++.++..+..+.+.+.|...+..|..++..        .+..+..+.+  
T Consensus        30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~--------~~~~~~~~~~--   99 (264)
T d1xqra1          30 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQN--------VAAIQEQVLG--   99 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT--------CHHHHHHHHH--
T ss_pred             CHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--------HHHHHHHHHH--
Confidence            677888999999999865 343332     345555444444557777777777766641        1222221111  


Q ss_pred             HhcCCcchHHHHHHHHHHHHH--hhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhhccccCCCch
Q psy16364        101 RMEGTRHGALVAAQMMDVAIR--VSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNH  178 (276)
Q Consensus       101 ~~~~~~~~~~i~~~l~~vi~~--~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n  178 (276)
                              ......+++++.+  .+.++..+...+..+.....        .....+    ...+|.-.+-+++.+.+..
T Consensus       100 --------~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~--------~~~~~~----~~~~gi~~L~~lL~~~~~~  159 (264)
T d1xqra1         100 --------LGALRKLLRLLDRDACDTVRVKALFAISCLVREQE--------AGLLQF----LRLDGFSVLMRAMQQQVQK  159 (264)
T ss_dssp             --------TTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH--------HHHHHH----HHTTHHHHHHHHHHSSCHH
T ss_pred             --------cCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccch--------hhHHHH----HHhhhhhHHHHHHhcCchH
Confidence                    1123344444433  23455555666665543210        011111    1223345555666666777


Q ss_pred             HHHHHHHHHHHHhhhCccchHH-----HHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy16364        179 MKYLGLLAMSKILKTHPKSVQS-----HRDLIMQCLDDKDESIRLRALDLLYGMVS  229 (276)
Q Consensus       179 ~ryl~L~~l~~l~~~~~~~~~~-----~~~~i~~~l~~~D~~iq~ralell~~l~~  229 (276)
                      ++.-++.++..++..++.....     ..+.++..|+++|.++|..|+.-+..|+.
T Consensus       160 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~  215 (264)
T d1xqra1         160 LKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT  215 (264)
T ss_dssp             HHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            7777888888887776654322     35677888999999999999999877764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.0093  Score=53.67  Aligned_cols=99  Identities=18%  Similarity=0.216  Sum_probs=64.5

Q ss_pred             hhhccccCCCchHHHHHHHHHHHHhhhCccc--hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc---c-hHHHHHHHH
Q psy16364        167 FNIKFSSRMPNHMKYLGLLAMSKILKTHPKS--VQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK---K-TLMEIVKKL  240 (276)
Q Consensus       167 ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~--~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~---~-n~~~iv~~l  240 (276)
                      .+-+++.+.+...|..++.++..++...+..  .......+...++|++..+|.-+.+.+..++..   + ....+++.+
T Consensus       207 ~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l  286 (588)
T d1b3ua_         207 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAF  286 (588)
T ss_dssp             HHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHH
T ss_pred             HHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHH
Confidence            3444556666677888888888887764421  223456677788899999999998877665432   1 122345555


Q ss_pred             HHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        241 MVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       241 ~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      ...+...+ .+.|..-+..+..+++.
T Consensus       287 ~~ll~d~~-~~vr~~a~~~l~~~~~~  311 (588)
T d1b3ua_         287 QNLMKDCE-AEVRAAASHKVKEFCEN  311 (588)
T ss_dssp             HHHHTCSS-HHHHHHHHHHHHHHHHT
T ss_pred             HHHHhccc-hHHHHHHHHHHHHHHHH
Confidence            55444454 48888888888777764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.0068  Score=54.63  Aligned_cols=69  Identities=13%  Similarity=0.131  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhh---cCCchHHHHHHHHHHHHhcc
Q psy16364        198 VQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK---AEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       198 ~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~---~~~~~~~~~l~~~i~~~~~~  266 (276)
                      .+.....+...++|.|.++|..+...+-.+...-....+.+.+++.+..   ..+...|...+..+..++..
T Consensus       361 ~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~  432 (588)
T d1b3ua_         361 IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ  432 (588)
T ss_dssp             HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            3445667778889999999999888765554433334444444444422   23347888888877777654

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.047  Score=47.91  Aligned_cols=236  Identities=13%  Similarity=0.113  Sum_probs=130.5

Q ss_pred             HHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC---cHHH-----HHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCc
Q psy16364         13 QSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK---TLME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQ   84 (276)
Q Consensus        13 ~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~---n~~~-----iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~   84 (276)
                      .+.++.+...++.+|...+..|+..+..+.+.+   ++..     ++|.|++.+....+...+.+.+..+..++..+. .
T Consensus        75 ~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~-~  153 (503)
T d1wa5b_          75 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS-A  153 (503)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH-H
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH-H
Confidence            346778888999999999999999998887532   2333     478899888776665677777766666664210 0


Q ss_pred             cCCChhh--HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHH-----HHHHHHhhcCCCCCCCCCCchhhhhhHH
Q psy16364         85 YITNFEW--YMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFA-----VAQMSSLLASPSPPLSQPSSRMAEMMFD  157 (276)
Q Consensus        85 ~~~~~~W--~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~~~~~~~L~~  157 (276)
                      +......  .+..+..++.-....+.......+..+....+..+...     +..+..++...          ..++.+.
T Consensus       154 ~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~----------~~~~~~~  223 (503)
T d1wa5b_         154 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN----------KPSLIRT  223 (503)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC----------CHHHHHH
T ss_pred             HHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccC----------CHHHHHH
Confidence            0000000  13334444443221122222233333333333333322     22233333221          1334444


Q ss_pred             hhhccccchhhhcccc-----------------------CCCchHHHHHHHHHHHHhhhCccchH-----HHHHHHHHHh
Q psy16364        158 EYSDRSSKIFNIKFSS-----------------------RMPNHMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQCL  209 (276)
Q Consensus       158 ~~~~~~~~~ilGef~~-----------------------~~~~n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~~l  209 (276)
                      ++      |++..++.                       ..+...+.-++.++..++...+....     ...+.++.++
T Consensus       224 ~~------~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll  297 (503)
T d1wa5b_         224 AT------WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL  297 (503)
T ss_dssp             HH------HHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG
T ss_pred             HH------HHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcc
Confidence            44      55554433                       22333344445666666654443222     2345677889


Q ss_pred             cCCCHHHHHHHHHHHHhcCCcch-HH-H-----HHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        210 DDKDESIRLRALDLLYGMVSKKT-LM-E-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       210 ~~~D~~iq~ralell~~l~~~~n-~~-~-----iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      .+.+..++..|+..+..++.... .. .     +++.|...+... ++.+|.+.+..+..++..
T Consensus       298 ~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~  360 (503)
T d1wa5b_         298 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAG  360 (503)
T ss_dssp             GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTS
T ss_pred             cCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhc
Confidence            99999999999999977765432 22 2     233344444434 458999999999888764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.012  Score=50.35  Aligned_cols=241  Identities=14%  Similarity=0.131  Sum_probs=129.7

Q ss_pred             hHHHHHhhhcCCChhHHhhHHHHHHhhcC-CCc--HHH-----HHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCC-c-
Q psy16364         15 HRDLIMQCLDDKDESIRLRALDLLYGMVS-KKT--LME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNY-Q-   84 (276)
Q Consensus        15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~-~~n--~~~-----iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y-~-   84 (276)
                      -++.+++.|+++|+..+..|+.-+..+.+ .+|  ...     ++|.|++.|...++.+.|......+..+|..+.. . 
T Consensus        14 ~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~   93 (434)
T d1q1sc_          14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK   93 (434)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhh
Confidence            36778889999999999999999988753 333  222     6789999997665556777777777766642110 0 


Q ss_pred             cCCChhhHHHHHHHHHHhcCCcchHHHHHH----HHHHHHHhhhhHHH-----HHHHHHHhhcCCCCCCCCCCchhhhhh
Q psy16364         85 YITNFEWYMTVLVELTRMEGTRHGALVAAQ----MMDVAIRVSAVRAF-----AVAQMSSLLASPSPPLSQPSSRMAEMM  155 (276)
Q Consensus        85 ~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~----l~~vi~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~~~~~~~L  155 (276)
                      ... ..=.+..+++++...    ..++.+.    +..+....+..+..     +...+..++.....     .......+
T Consensus        94 ~i~-~~~~i~~l~~~L~~~----~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~-----~~~~~~~~  163 (434)
T d1q1sc_          94 AVV-DGGAIPAFISLLASP----HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDL-----STLACGYL  163 (434)
T ss_dssp             HHH-HTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCG-----GGSCHHHH
T ss_pred             Hhh-hccchhhhhhccccC----CHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhccc-----ccchHHHH
Confidence            000 001233444444322    2334333    33333333333322     22223333322110     00011223


Q ss_pred             HHhh-------hcc----------ccchhhhccccCCCchHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcCCC
Q psy16364        156 FDEY-------SDR----------SSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDDKD  213 (276)
Q Consensus       156 ~~~~-------~~~----------~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~D  213 (276)
                      +.++       ...          ...-.+-.++...+...+.-++.++..++...+...     ....+.++.++++++
T Consensus       164 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~  243 (434)
T d1q1sc_         164 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE  243 (434)
T ss_dssp             HHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccch
Confidence            3333       000          000122233334444455556666666665443222     234567788999999


Q ss_pred             HHHHHHHHHHHHhcCCcc--hHHHHHH-----HHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        214 ESIRLRALDLLYGMVSKK--TLMEIVK-----KLMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       214 ~~iq~ralell~~l~~~~--n~~~iv~-----~l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      ..+|+-|+..+..++..+  ....+++     .|.+.+...+ ++.|...+..+..++..
T Consensus       244 ~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~v~~~a~~~L~~l~~~  302 (434)
T d1q1sc_         244 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK-TNIQKEATWTMSNITAG  302 (434)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSS-HHHHHHHHHHHHHHTTS
T ss_pred             hhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccc-hhhhHHHHHHHhhhccc
Confidence            999999999997776432  3333333     3555555444 58888888888888764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=0.018  Score=49.20  Aligned_cols=100  Identities=14%  Similarity=0.120  Sum_probs=66.3

Q ss_pred             ccccCCCchHHHHHHHHHHHHhhhCccchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-ch-HHH-----HH
Q psy16364        170 KFSSRMPNHMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQCLDDKDESIRLRALDLLYGMVSK-KT-LME-----IV  237 (276)
Q Consensus       170 ef~~~~~~n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~~l~~~D~~iq~ralell~~l~~~-~n-~~~-----iv  237 (276)
                      +++...+..++.-++.++..++..++....     +..+.+..+|++++.++|..|+..+..++.. .+ ...     ++
T Consensus       237 ~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i  316 (434)
T d1q1sc_         237 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV  316 (434)
T ss_dssp             HHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred             cccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhH
Confidence            344445556666677777777654433222     2234567789999999999999999888742 22 222     44


Q ss_pred             HHHHHHhhhcCCchHHHHHHHHHHHHhccCCcc
Q psy16364        238 KKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQ  270 (276)
Q Consensus       238 ~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~~y~  270 (276)
                      +.+++.+...+ ..+|.+.+..+..++...+.+
T Consensus       317 ~~li~~l~~~~-~~v~~~a~~~l~nl~~~~~~~  348 (434)
T d1q1sc_         317 PFLVGVLSKAD-FKTQKEAAWAITNYTSGGTVE  348 (434)
T ss_dssp             HHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHhccC-hHHHHHHHHHHHHHHhcCCHH
Confidence            55666665555 589999999998888765543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.011  Score=54.81  Aligned_cols=196  Identities=10%  Similarity=0.070  Sum_probs=110.3

Q ss_pred             ChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC---C-CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCC
Q psy16364          8 HPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS---K-KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNY   83 (276)
Q Consensus         8 ~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~---~-~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y   83 (276)
                      .|+.-+..++.++++|.++++.||..+-.++..++.   + ..|.++++.|+..+...++...|.-.+..+..+|+..+.
T Consensus        89 ~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~  168 (861)
T d2bpta1          89 SPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADP  168 (861)
T ss_dssp             CHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSST
T ss_pred             CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhH
Confidence            455556677888999999999999999998888764   2 358889999888776655544454434444455542111


Q ss_pred             ccCCChhhHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhcc
Q psy16364         84 QYITNFEWYMTVLVELTRMEG-TRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDR  162 (276)
Q Consensus        84 ~~~~~~~W~v~~ll~ll~~~~-~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~  162 (276)
                      .+..-.+=....+..++.... .....              .+|..+...+..++.......  .   .........   
T Consensus       169 ~~~~~~~~~~~il~~i~~~~~~~~~~~--------------~v~~~a~~~l~~~~~~~~~~~--~---~~~~~~~~~---  226 (861)
T d2bpta1         169 QSQALVSSSNNILIAIVQGAQSTETSK--------------AVRLAALNALADSLIFIKNNM--E---REGERNYLM---  226 (861)
T ss_dssp             TSSTTGGGHHHHHHHHHHHHSTTCCCH--------------HHHHHHHHHHHHHGGGCHHHH--T---SHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCH--------------HHHHHHHHHHHHHHHHHhHhH--H---hhhhhhHHH---
Confidence            111111111222223332211 11111              233333333333333211000  0   011111111   


Q ss_pred             ccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHH-----HHHHhcCCCHHHHHHHHHHHHhcC
Q psy16364        163 SSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDL-----IMQCLDDKDESIRLRALDLLYGMV  228 (276)
Q Consensus       163 ~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~-----i~~~l~~~D~~iq~ralell~~l~  228 (276)
                         .++.+.....+...|.-++.++.+++...+.....|...     .....++.|.+++..|+|++..++
T Consensus       227 ---~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~  294 (861)
T d2bpta1         227 ---QVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTIC  294 (861)
T ss_dssp             ---HHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             ---HhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence               345555566666778888888999988877766655433     234557899999999999986554

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.19  Score=44.07  Aligned_cols=241  Identities=8%  Similarity=0.063  Sum_probs=126.5

Q ss_pred             HhHHHHHhhhcC-CChhHHhhHHHHHHhhcCCCc-HHH-----HHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCC-cc
Q psy16364         14 SHRDLIMQCLDD-KDESIRLRALDLLYGMVSKKT-LME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNY-QY   85 (276)
Q Consensus        14 ~~~~~I~~~L~d-~D~sIr~~aL~Ll~~l~~~~n-~~~-----iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y-~~   85 (276)
                      ..++.++++|.+ .|+.++..|...+..++.... ...     .++.|++.|...++ +.+...+..+..+|..+.. +-
T Consensus        59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~-~v~~~a~~aL~~l~~~~~~~~~  137 (529)
T d1jdha_          59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKM  137 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHHHHCTTHHH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCH-HHHHHHHHHHHHhhcccchhhh
Confidence            457778888864 688999999999999986432 222     36888888876554 7787777777777753111 00


Q ss_pred             CCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHH-----HHHHHHHHhhcCCCCCCCCCCchhhhhhHHhh-
Q psy16364         86 ITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRA-----FAVAQMSSLLASPSPPLSQPSSRMAEMMFDEY-  159 (276)
Q Consensus        86 ~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~-  159 (276)
                      ..-..=.+..+++++..............+..+....+..+.     .++..+..++....         ...+...++ 
T Consensus       138 ~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~---------~~~~~~~~~~  208 (529)
T d1jdha_         138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT---------YEKLLWTTSR  208 (529)
T ss_dssp             HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC---------CHHHHHHHHH
T ss_pred             HHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhh---------hHHHHHHHHH
Confidence            000000134455544322111111222223222221111111     12233333332211         011222222 


Q ss_pred             ---------------hccccchhhhccccCCCchHHHHHHHHHHHHhhhCc--cchHHHHHHHHHHhcCCCHHHHHHHHH
Q psy16364        160 ---------------SDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHP--KSVQSHRDLIMQCLDDKDESIRLRALD  222 (276)
Q Consensus       160 ---------------~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~--~~~~~~~~~i~~~l~~~D~~iq~rale  222 (276)
                                     .+.++...+..++...+...+.-++.++..+.....  .......+.++..+++.|.++|..|..
T Consensus       209 ~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~  288 (529)
T d1jdha_         209 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG  288 (529)
T ss_dssp             HHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHH
Confidence                           112233445555555555555556666666654432  223456788888999999999999999


Q ss_pred             HHHhcCC--cchHHH-----HHHHHHHHhhhc-CCchHHHHHHHHHHHHh
Q psy16364        223 LLYGMVS--KKTLME-----IVKKLMVHMDKA-EGTMYRDELLSKVIDIC  264 (276)
Q Consensus       223 ll~~l~~--~~n~~~-----iv~~l~~~l~~~-~~~~~~~~l~~~i~~~~  264 (276)
                      .+..++.  +++...     .+..|+..+... +.+..++..+..+..++
T Consensus       289 ~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~  338 (529)
T d1jdha_         289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT  338 (529)
T ss_dssp             HHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhccc
Confidence            9988864  333332     344556666443 32345555555555555

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.62  E-value=0.054  Score=47.54  Aligned_cols=218  Identities=12%  Similarity=0.085  Sum_probs=115.2

Q ss_pred             hHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc-HH------HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCC
Q psy16364         15 HRDLIMQCLDDKDESIRLRALDLLYGMVSKKT-LM------EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYIT   87 (276)
Q Consensus        15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n-~~------~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~   87 (276)
                      ..+.+..+|++++..++..|+..+..++.... .+      .+++.|+..+..... ..+...+..+..+|....  ..+
T Consensus       163 ~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~-~~~~~~~~~l~nl~~~~~--~~~  239 (503)
T d1wa5b_         163 AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP-SLIRTATWTLSNLCRGKK--PQP  239 (503)
T ss_dssp             CHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCH-HHHHHHHHHHHHHHCCSS--SCC
T ss_pred             ChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCH-HHHHHHHHHHHHHhcCCc--cch
Confidence            46778899999999999999999999986432 21      135666666654443 555556666666664211  011


Q ss_pred             Chhh---HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhcccc
Q psy16364         88 NFEW---YMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSS  164 (276)
Q Consensus        88 ~~~W---~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~  164 (276)
                      +..-   .+..+..++..    .+.++.......+.              .+....           .+...... +.+.
T Consensus       240 ~~~~~~~~l~~l~~~l~~----~d~~~~~~~~~~l~--------------~l~~~~-----------~~~~~~~~-~~~~  289 (503)
T d1wa5b_         240 DWSVVSQALPTLAKLIYS----MDTETLVDACWAIS--------------YLSDGP-----------QEAIQAVI-DVRI  289 (503)
T ss_dssp             CHHHHGGGHHHHHHHTTC----CCHHHHHHHHHHHH--------------HHHSSC-----------HHHHHHHH-HTTC
T ss_pred             HHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHH--------------hhccCC-----------chhhhhhh-hhhh
Confidence            1110   11122222211    12333222222222              111100           00000000 0000


Q ss_pred             chhhhccccCCCchHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--cchHHHH-
Q psy16364        165 KIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDDKDESIRLRALDLLYGMVS--KKTLMEI-  236 (276)
Q Consensus       165 ~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~D~~iq~ralell~~l~~--~~n~~~i-  236 (276)
                      .-.+-+++...+...+.-++.++..++.......     ....+.+..++++++.++|+.|+-.+..++.  ++....+ 
T Consensus       290 ~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~  369 (503)
T d1wa5b_         290 PKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI  369 (503)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             hhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            1112223333344455555555555554333211     1234567788899999999999998877753  3334333 


Q ss_pred             ----HHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        237 ----VKKLMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       237 ----v~~l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                          ++.++..+...+ ...|.+.+..++.++..
T Consensus       370 ~~~~l~~li~~l~~~~-~~v~~~a~~~l~nl~~~  402 (503)
T d1wa5b_         370 DANLIPPLVKLLEVAE-YKTKKEACWAISNASSG  402 (503)
T ss_dssp             HTTCHHHHHHHHHHSC-HHHHHHHHHHHHHHHHH
T ss_pred             HccccchhHHhcccCC-hhHHHHHHHHHHHHHhc
Confidence                356666666666 48899999888888764

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.084  Score=51.18  Aligned_cols=215  Identities=10%  Similarity=0.124  Sum_probs=110.8

Q ss_pred             HHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC---CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCCh
Q psy16364         13 QSHRDLIMQCLDDKDESIRLRALDLLYGMVSK---KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNF   89 (276)
Q Consensus        13 ~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~---~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~~   89 (276)
                      ....+.++..|+|++.+||++|+..+..++..   .-+..+++.+++.+........|...+..+..++....+.+.+-.
T Consensus       171 ~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l  250 (1207)
T d1u6gc_         171 PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL  250 (1207)
T ss_dssp             HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHH
Confidence            34566778889999999999999999988753   334567888888876654445555556666666654444554433


Q ss_pred             hhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhh-hHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhh---hccccc
Q psy16364         90 EWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSA-VRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEY---SDRSSK  165 (276)
Q Consensus        90 ~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~---~~~~~~  165 (276)
                      +=.+..+++.+..............+..++...|. +.++..+.+..+++....-.+..............   .+....
T Consensus       251 ~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~  330 (1207)
T d1u6gc_         251 EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQ  330 (1207)
T ss_dssp             TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-------------------------
T ss_pred             HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhh
Confidence            44455555555544444433444444444444443 33333333333333221100000000000000000   000000


Q ss_pred             hhhhccc--cCCCchHHHHHHHHHHHHhhhCccchHHH----HHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy16364        166 IFNIKFS--SRMPNHMKYLGLLAMSKILKTHPKSVQSH----RDLIMQCLDDKDESIRLRALDLLYGM  227 (276)
Q Consensus       166 ~ilGef~--~~~~~n~ryl~L~~l~~l~~~~~~~~~~~----~~~i~~~l~~~D~~iq~ralell~~l  227 (276)
                      ..-..|.  .......|..+..++..++...++....+    .+.++..+.+++.++|..+..-+..+
T Consensus       331 ~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l  398 (1207)
T d1u6gc_         331 GSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSL  398 (1207)
T ss_dssp             -----------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHH
T ss_pred             hHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            0001111  12223567777888888887777655544    44556677888999998887776444

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.17  Score=39.90  Aligned_cols=66  Identities=14%  Similarity=0.037  Sum_probs=47.2

Q ss_pred             HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC-cHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy16364         14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKK-TLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICS   79 (276)
Q Consensus        14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~-n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~   79 (276)
                      +-.+.+.++|+|+|+.||..|+..+..+.... .-..+++.+...+....+...|...+..+..++.
T Consensus        50 ~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~  116 (276)
T d1oyza_          50 DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCK  116 (276)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccchHHHHHHHHhcCCChhHHHHHHHHHHHHcc
Confidence            34677889999999999999999999887543 3444556666655544445677777777766654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.31  Score=45.74  Aligned_cols=68  Identities=15%  Similarity=0.181  Sum_probs=45.3

Q ss_pred             HHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC---CC----cHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhh
Q psy16364         12 VQSHRDLIMQCLDDKDESIRLRALDLLYGMVS---KK----TLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ   80 (276)
Q Consensus        12 v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~---~~----n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~   80 (276)
                      +.+-.+.++.+|+|+++.||..|+..+..++.   +.    ....+++.+++.+...++ ..+......+...++.
T Consensus       434 l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~-~V~~~a~~al~~l~~~  508 (888)
T d1qbkb_         434 LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSAFATLEEE  508 (888)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCH-HHHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCH-HHHHHHHHHHHHHHHH
Confidence            45566788899999999999999988876653   22    234566666666554433 5555556666655553

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.24  Score=41.55  Aligned_cols=62  Identities=13%  Similarity=0.050  Sum_probs=46.7

Q ss_pred             hhhhccccCCCchHHHHHHHHHHHHhhh-C----ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy16364        166 IFNIKFSSRMPNHMKYLGLLAMSKILKT-H----PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGM  227 (276)
Q Consensus       166 ~ilGef~~~~~~n~ryl~L~~l~~l~~~-~----~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l  227 (276)
                      ..+.+.+.+.+.+.|+-++.++..++.. .    ...+++..+.++.+++|++..+|..|+.-+-.+
T Consensus       368 ~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i  434 (458)
T d1ibrb_         368 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI  434 (458)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            3455666667777888888888877742 1    234667788899999999999999999887444

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.092  Score=42.21  Aligned_cols=62  Identities=18%  Similarity=0.236  Sum_probs=46.4

Q ss_pred             HHHhhhcCCChhHHhhHHHHHHhhcCCCc-HH------HHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy16364         18 LIMQCLDDKDESIRLRALDLLYGMVSKKT-LM------EIVKKLMVHMDKAEGTMYRDELLSKVIDICS   79 (276)
Q Consensus        18 ~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n-~~------~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~   79 (276)
                      .+..+|+++|+.||..|+..+..++..+. +.      ..++.|++.+....+...|...+..+..++.
T Consensus        63 ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~  131 (264)
T d1xqra1          63 LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR  131 (264)
T ss_dssp             HHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Confidence            34568999999999999999999996432 21      3578888888665555777777777777764

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.64  Score=38.75  Aligned_cols=90  Identities=13%  Similarity=0.084  Sum_probs=65.2

Q ss_pred             CchHHHHHHHHHHHHhhhCc-cchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC---cc----hHHHHHHHHHHHhhhc
Q psy16364        176 PNHMKYLGLLAMSKILKTHP-KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS---KK----TLMEIVKKLMVHMDKA  247 (276)
Q Consensus       176 ~~n~ryl~L~~l~~l~~~~~-~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~---~~----n~~~iv~~l~~~l~~~  247 (276)
                      +.+.|..+..++..++...+ ...+...+.+.+.++|+|..+|.-|+..+..++.   +.    -+..+++.+++.+...
T Consensus       340 ~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~  419 (458)
T d1ibrb_         340 DWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP  419 (458)
T ss_dssp             CCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS
T ss_pred             cccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCC
Confidence            34578888888888887765 3456677888889999999999999998867764   22    3455666666666555


Q ss_pred             CCchHHHHHHHHHHHHhcc
Q psy16364        248 EGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       248 ~~~~~~~~l~~~i~~~~~~  266 (276)
                      . +..|..-+..+..+++.
T Consensus       420 ~-~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         420 S-VVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             C-HHHHHHHHHHHHHHHHH
T ss_pred             C-HHHHHHHHHHHHHHHHH
Confidence            5 48888777777666653

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=3.5  Score=38.13  Aligned_cols=183  Identities=13%  Similarity=0.146  Sum_probs=95.0

Q ss_pred             hHHHHHhhhcCCChhHHhhHHHHHHhhcC--CC----cHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCC
Q psy16364         15 HRDLIMQCLDDKDESIRLRALDLLYGMVS--KK----TLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITN   88 (276)
Q Consensus        15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~--~~----n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~   88 (276)
                      ..+.+..|+.|+++.||..|+.++-+++.  ..    .+..+++.+.+.|..... +.+...+..+..++..-.-.+.+-
T Consensus       666 l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~-~v~~~a~~~ig~ia~~~~~~~~py  744 (888)
T d1qbkb_         666 ILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFI-SVCNNATWAIGEISIQMGIEMQPY  744 (888)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGH-HHHHHHHHHHHHHHHHTGGGGGGG
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCH-HHHHHHHHHHHHHHHHHHHHhhhh
Confidence            56778899999999999999999988764  22    345566666655543322 344444444444543211122221


Q ss_pred             hhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhh
Q psy16364         89 FEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFN  168 (276)
Q Consensus        89 ~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~il  168 (276)
                      .+-.+..+++++..+.  ....+.+.....+.+.-...+   ..+...              .+.++..        |+.
T Consensus       745 ~~~il~~L~~il~~~~--~~~~v~~n~~~~lgrl~~~~p---~~~~~~--------------l~~~~~~--------~~~  797 (888)
T d1qbkb_         745 IPMVLHQLVEIINRPN--TPKTLLENTAITIGRLGYVCP---QEVAPM--------------LQQFIRP--------WCT  797 (888)
T ss_dssp             SHHHHHHHHHHHTCTT--CCHHHHHHHHHHHHHHHHHCH---HHHGGG--------------GGGTHHH--------HHH
T ss_pred             HHHHHHHHHHHHcCCC--ccHHHHHHHHHHHHHHHHHCH---HHHHhh--------------HHHHHHH--------HHH
Confidence            2223333444443221  223333333322222100000   000000              1223322        222


Q ss_pred             hccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhc---CCCHHHHHHHHHHHHh
Q psy16364        169 IKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLD---DKDESIRLRALDLLYG  226 (276)
Q Consensus       169 Gef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~---~~D~~iq~ralell~~  226 (276)
                      . .....++..|--+...+..++..+|..+..+...++.+.-   ++..++++-...++..
T Consensus       798 ~-l~~~~d~~ek~~~~~g~~~~i~~~p~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~~  857 (888)
T d1qbkb_         798 S-LRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHG  857 (888)
T ss_dssp             H-HTTSCCSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHTTCSSCCHHHHHHHHHHHHH
T ss_pred             H-hccCCCcHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            1 1123455667778888889999998777666665665443   4667888877777744

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.53  E-value=0.34  Score=40.03  Aligned_cols=95  Identities=12%  Similarity=0.163  Sum_probs=62.2

Q ss_pred             ccCCCchHHHHHHHHHHHHhhhCccchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHhcC--CcchHHHH-----HHH
Q psy16364        172 SSRMPNHMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQCLDDKDESIRLRALDLLYGMV--SKKTLMEI-----VKK  239 (276)
Q Consensus       172 ~~~~~~n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~~l~~~D~~iq~ralell~~l~--~~~n~~~i-----v~~  239 (276)
                      +.+.++..+-.+..++..++.-+++...     +-.+.+++.|++++.++|..|...|..++  +++|-..+     ++.
T Consensus        11 L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~   90 (457)
T d1xm9a1          11 LSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIRE   90 (457)
T ss_dssp             HHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHH
Confidence            3444455555555555555543332221     22455777899999999999999997776  34454444     566


Q ss_pred             HHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364        240 LMVHMDKAEGTMYRDELLSKVIDICSQ  266 (276)
Q Consensus       240 l~~~l~~~~~~~~~~~l~~~i~~~~~~  266 (276)
                      |+..+....++..|...+..+..+++.
T Consensus        91 li~~l~~~~~~~~~~~a~~~l~~l~~~  117 (457)
T d1xm9a1          91 AVSLLRRTGNAEIQKQLTGLLWNLSST  117 (457)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHhccCcHHHHHHHHHHHHHHHhh
Confidence            777776666667888888888887764

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.61  E-value=3.6  Score=33.35  Aligned_cols=62  Identities=10%  Similarity=0.080  Sum_probs=43.0

Q ss_pred             HHHHHhhhcCCChhHHhhHHHHHHhhcC--CCcHHHH-----HHHHHHhhhhcCCchhHHHHHHHHHHHh
Q psy16364         16 RDLIMQCLDDKDESIRLRALDLLYGMVS--KKTLMEI-----VKKLMVHMDKAEGTMYRDELLSKVIDIC   78 (276)
Q Consensus        16 ~~~I~~~L~d~D~sIr~~aL~Ll~~l~~--~~n~~~i-----v~~L~~~L~~~~~~~~r~~li~~I~~~~   78 (276)
                      ++.++++|.++|+.++..|...|..+|-  +++-..+     +|.|++.|...++ +.|...+..+..++
T Consensus         4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~v~~~a~~aL~~L~   72 (457)
T d1xm9a1           4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ-NVQQAAAGALRNLV   72 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCH-HHHHHHHHHHHHHH
Confidence            5788999999999999999999999984  3343333     5677777654332 55555444444444

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.00  E-value=0.83  Score=30.97  Aligned_cols=77  Identities=9%  Similarity=0.064  Sum_probs=46.5

Q ss_pred             ccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCCch
Q psy16364        172 SSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTM  251 (276)
Q Consensus       172 ~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~~~  251 (276)
                      +.+.+...|.-+..+|..+.      -++..+.+..+|+|+|..+|..|.+-|-.+-++.    .++.|.+.+...+ +.
T Consensus        31 l~d~~~~vR~~a~~~L~~~~------~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~~~----~~~~L~~ll~d~~-~~   99 (111)
T d1te4a_          31 LSNEDWRIRGAAAWIIGNFQ------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGGER----VRAAMEKLAETGT-GF   99 (111)
T ss_dssp             GGCSCHHHHHHHHHHHGGGC------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSHH----HHHHHHHHTTSCC-TH
T ss_pred             HcCCCHHHHHHHHHHHHhcc------hhhhHHHHHhhhccchhHHHHHHHHHHHHhCccc----hHHHHHHHHcCCC-HH
Confidence            34444455655555554432      1244566788999999999999999996665432    3333444444444 47


Q ss_pred             HHHHHHHH
Q psy16364        252 YRDELLSK  259 (276)
Q Consensus       252 ~~~~l~~~  259 (276)
                      .|..-+..
T Consensus       100 vr~~A~~a  107 (111)
T d1te4a_         100 ARKVAVNY  107 (111)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77665543

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=86.77  E-value=1.1  Score=30.34  Aligned_cols=55  Identities=16%  Similarity=0.224  Sum_probs=37.7

Q ss_pred             HHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Q psy16364         16 RDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVI   75 (276)
Q Consensus        16 ~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~   75 (276)
                      .+.++++|+|+|+.||..|+..+-.+..+    ..++.|.+.|...++ ..|...+..+.
T Consensus        24 ~~~L~~~l~d~~~~vR~~a~~~L~~~~~~----~~~~~L~~~l~d~~~-~VR~~a~~aL~   78 (111)
T d1te4a_          24 FEPLLESLSNEDWRIRGAAAWIIGNFQDE----RAVEPLIKLLEDDSG-FVRSGAARSLE   78 (111)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHGGGCSH----HHHHHHHHHHHHCCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcchh----hhHHHHHhhhccchh-HHHHHHHHHHH
Confidence            35577899999999999999998876653    345666666654443 55554444443

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.31  E-value=3.2  Score=29.95  Aligned_cols=72  Identities=11%  Similarity=0.099  Sum_probs=45.0

Q ss_pred             cccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC--c------HHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Q psy16364          5 LKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK--T------LMEIVKKLMVHMDKAEGTMYRDELLSKVID   76 (276)
Q Consensus         5 ~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~--n------~~~iv~~L~~~L~~~~~~~~r~~li~~I~~   76 (276)
                      ++..|....+-...|.+-|.++++-+...||.|+-.++...  .      -++++.+|.+.+....+...+..++.-|..
T Consensus        33 I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~  112 (145)
T d1dvpa1          33 INQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQT  112 (145)
T ss_dssp             HHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred             HhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            34555555667777888899999999999999999988431  0      133445555544443333444444443333

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.98  E-value=17  Score=32.33  Aligned_cols=87  Identities=15%  Similarity=0.259  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHhhhCccc----hHHHHHHHHHHhcC-CCHHHHHHHHHHHHhcCC--cchHH----HHHHHHHHHhhhc
Q psy16364        179 MKYLGLLAMSKILKTHPKS----VQSHRDLIMQCLDD-KDESIRLRALDLLYGMVS--KKTLM----EIVKKLMVHMDKA  247 (276)
Q Consensus       179 ~ryl~L~~l~~l~~~~~~~----~~~~~~~i~~~l~~-~D~~iq~ralell~~l~~--~~n~~----~iv~~l~~~l~~~  247 (276)
                      .+--++.++..++...+..    .+...+.++..|++ .+.++++-|++++-.++.  .+.+.    .+++.+++.|...
T Consensus       624 ~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~  703 (876)
T d1qgra_         624 VQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNE  703 (876)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCT
T ss_pred             hHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCc
Confidence            4444566666666554433    34445555566655 457899999998744432  34444    4444555555332


Q ss_pred             -CCchHHHHHHHHHHHHhc
Q psy16364        248 -EGTMYRDELLSKVIDICS  265 (276)
Q Consensus       248 -~~~~~~~~l~~~i~~~~~  265 (276)
                       .+...|...+..+..++.
T Consensus       704 ~~~~~~k~~~~~~i~~i~~  722 (876)
T d1qgra_         704 NVHRSVKPQILSVFGDIAL  722 (876)
T ss_dssp             TSCGGGHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHH
Confidence             124788888777766653

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.35  E-value=9.3  Score=31.34  Aligned_cols=135  Identities=20%  Similarity=0.232  Sum_probs=77.9

Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHH--------HHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhh
Q psy16364         98 ELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAV--------AQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNI  169 (276)
Q Consensus        98 ~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~--------~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilG  169 (276)
                      +....+.-+++.+....+.+++.+++++-..-.        ..+-.++++.+.          =+=+++.      -.+|
T Consensus       162 ~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NY----------VtrRqSl------KLLg  225 (330)
T d1upka_         162 RYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENY----------VTKRQSL------KLLG  225 (330)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSH----------HHHHHHH------HHHH
T ss_pred             HHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCch----------HHHHHHH------HHHH
Confidence            344444334566777888899988876432211        122223332211          1223344      6677


Q ss_pred             ccccCCCch---HHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHH-hcCCcchHHHHHH-------
Q psy16364        170 KFSSRMPNH---MKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLY-GMVSKKTLMEIVK-------  238 (276)
Q Consensus       170 ef~~~~~~n---~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~-~l~~~~n~~~iv~-------  238 (276)
                      |++....+.   .||++              -+++...++..|+|..-.||-.|....- -.+|++.-.+|+.       
T Consensus       226 elLldr~N~~vm~~Yvs--------------~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~  291 (330)
T d1upka_         226 ELLLDRHNFTIMTKYIS--------------KPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQA  291 (330)
T ss_dssp             HHHHSGGGHHHHHHHTT--------------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHH
T ss_pred             HHHhhhhHHHHHHHHhC--------------CHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHH
Confidence            766555441   23333              3577888999999999999999999973 3356654444443       


Q ss_pred             HHHHHhhh-----cCCchHHHH---HHHHHHH
Q psy16364        239 KLMVHMDK-----AEGTMYRDE---LLSKVID  262 (276)
Q Consensus       239 ~l~~~l~~-----~~~~~~~~~---l~~~i~~  262 (276)
                      +|+.||..     .+|+.|.+|   ++..|..
T Consensus       292 kLl~fl~~f~~d~~~DeqF~~EK~~lI~~I~~  323 (330)
T d1upka_         292 KLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRD  323 (330)
T ss_dssp             HHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCCchhhHHHHHHHHHHHHHh
Confidence            44555533     356688666   6666544

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.21  E-value=6.5  Score=28.25  Aligned_cols=40  Identities=15%  Similarity=0.145  Sum_probs=32.4

Q ss_pred             cccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC
Q psy16364          5 LKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK   44 (276)
Q Consensus         5 ~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~   44 (276)
                      ++..|+-..+-...|.+-|.++++.+...||.|+-.++..
T Consensus        36 I~~~~~~~k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkN   75 (145)
T d1ujka_          36 LNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKS   75 (145)
T ss_dssp             HTSSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTS
T ss_pred             HhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            4456665666777788889999999999999999998853