Psyllid ID: psy16401

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
Protein Sequence
MESGDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFAREDLL
Secondary Structure (PSIPRED)
cccccEEEEEEEcccHHHHHHHHHHHHccccEEEEEEEEccEEEEEEcEEEccccHHHHHHcccccccccEEEcccccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEccccHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHEEHcccHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MESGDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSacspyfavslpipkrgmpetfspdlrfyetdgilpfaREDLL
Flexible Loop (DISEMBL)
MESGDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFAREDLL
Low Complexity Region (SEG)
MESGDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFAREDLL
Disordered region (IsUnstruct)
******HFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPF******
Disordered Region (DISOPRED)
****DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFAREDLL
Disordered Region (DISEMBL)
MESGDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFAREDLL
Disordered Region (DISPRO)
****DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFAREDLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESGDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFAREDLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	94	2.2.26 [Sep-21-2011]
Q7KQZ4	787	Longitudinals lacking pro	no	N/A	0.893	0.106	0.547	4e-21
Q9V5M6	963	Longitudinals lacking pro	no	N/A	0.893	0.087	0.547	4e-21
P42284	549	Longitudinals lacking pro	no	N/A	0.893	0.153	0.547	6e-21
P42283	891	Longitudinals lacking pro	no	N/A	0.893	0.094	0.547	6e-21
Q867Z4	970	Longitudinals lacking pro	no	N/A	0.893	0.086	0.547	1e-20
Q9V5M3	878	Longitudinals lacking pro	no	N/A	0.893	0.095	0.547	1e-20
P42282	813	Protein tramtrack, alpha	no	N/A	0.617	0.071	0.568	5e-15
P17789	643	Protein tramtrack, beta i	no	N/A	0.617	0.090	0.568	7e-15
Q9W0K4	1067	Protein bric-a-brac 2 OS=	no	N/A	0.595	0.052	0.614	1e-14
Q01295	727	Broad-complex core protei	no	N/A	0.882	0.114	0.433	2e-14

>sp|Q7KQZ4|LOLA3_DROME Longitudinals lacking protein, isoforms A/B/D/L OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 58/84 (69%)

Query: 5  DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI 64
          DQ FCLRWNNHQ+TLISVF  LL + TLVDC L+AEGK ++AHKV+LSACSPYFA  L  
Sbjct: 4  DQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQE 63

Query: 65 PKRGMPETFSPDLRFYETDGILPF 88
               P     D+++ E   ++ +
Sbjct: 64 QYDKHPIFILKDVKYQELRAMMDY 87

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.
Drosophila melanogaster (taxid: 7227)

>sp|Q9V5M6|LOLA5_DROME Longitudinals lacking protein, isoforms J/P/Q/S/Z OS=Drosophila melanogaster GN=lola PE=1 SV=4

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 58/84 (69%)

Query: 5  DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI 64
          DQ FCLRWNNHQ+TLISVF  LL + TLVDC L+AEGK ++AHKV+LSACSPYFA  L  
Sbjct: 4  DQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQE 63

Query: 65 PKRGMPETFSPDLRFYETDGILPF 88
               P     D+++ E   ++ +
Sbjct: 64 QYDKHPIFILKDVKYQELRAMMDY 87

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|P42284|LOLA2_DROME Longitudinals lacking protein, isoforms H/M/V OS=Drosophila melanogaster GN=lola PE=1 SV=2

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 58/84 (69%)

Query: 5  DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI 64
          DQ FCLRWNNHQ+TLISVF  LL + TLVDC L+AEGK ++AHKV+LSACSPYFA  L  
Sbjct: 4  DQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQE 63

Query: 65 PKRGMPETFSPDLRFYETDGILPF 88
               P     D+++ E   ++ +
Sbjct: 64 QYDKHPIFILKDVKYQELRAMMDY 87

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|P42283|LOLA1_DROME Longitudinals lacking protein, isoform G OS=Drosophila melanogaster GN=lola PE=1 SV=2

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 58/84 (69%)

Query: 5  DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI 64
          DQ FCLRWNNHQ+TLISVF  LL + TLVDC L+AEGK ++AHKV+LSACSPYFA  L  
Sbjct: 4  DQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQE 63

Query: 65 PKRGMPETFSPDLRFYETDGILPF 88
               P     D+++ E   ++ +
Sbjct: 64 QYDKHPIFILKDVKYQELRAMMDY 87

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q867Z4|LOLA4_DROME Longitudinals lacking protein, isoforms F/I/K/T OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 58/84 (69%)

Query: 5  DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI 64
          DQ FCLRWNNHQ+TLISVF  LL + TLVDC L+AEGK ++AHKV+LSACSPYFA  L  
Sbjct: 4  DQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQE 63

Query: 65 PKRGMPETFSPDLRFYETDGILPF 88
               P     D+++ E   ++ +
Sbjct: 64 QYDKHPIFILKDVKYQELRAMMDY 87

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q9V5M3|LOLA6_DROME Longitudinals lacking protein, isoforms N/O/W/X/Y OS=Drosophila melanogaster GN=lola PE=1 SV=3

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/84 (54%), Positives = 58/84 (69%)

Query: 5  DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI 64
          DQ FCLRWNNHQ+TLISVF  LL + TLVDC L+AEGK ++AHKV+LSACSPYFA  L  
Sbjct: 4  DQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQE 63

Query: 65 PKRGMPETFSPDLRFYETDGILPF 88
               P     D+++ E   ++ +
Sbjct: 64 QYDKHPIFILKDVKYQELRAMMDY 87

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|P42282|TTKA_DROME Protein tramtrack, alpha isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=3

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query: 1  MESGDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
          M+   Q FCLRWNNHQ+ L+SVF  LL++ T  D  L+ EG+ ++AHK++LSACSPYF
Sbjct: 1  MKMASQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAVEGQHLKAHKMVLSACSPYF 58

Binds to a number of sites in the transcriptional regulatory region of ftz. Isoform alpha is required to repress genes that promote the R7 cell fate. Probable repressor of the transcription of the segmentation genes ftz, eve, h, odd, run, and en. May bind to the region 5'-AGGG[CT]GG-3'. Degradation of ttk is directed by binding of sinah or sina, via the adapter molecule phyl which binds to the BTB domain of ttk.

Drosophila melanogaster (taxid: 7227)

>sp|P17789|TTKB_DROME Protein tramtrack, beta isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=2

 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query: 1  MESGDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
          M+   Q FCLRWNNHQ+ L+SVF  LL++ T  D  L+ EG+ ++AHK++LSACSPYF
Sbjct: 1  MKMASQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAVEGQHLKAHKMVLSACSPYF 58

Binds to a number of sites in the transcriptional regulatory region of ftz. Isoform beta is required to repress inappropriate segmentation gene transcription and repress genes incompatible with development of photoreceptor cell fates. Probable repressor of the transcription of the segmentation genes ftz, eve, h, odd, run, and en. Inhibits Trl-dependent activation of eve. May bind to the region AGGGC/TGG. Degradation of ttk is directed by binding of sinah or sina, via the adapter molecule phyl which binds to the BTB domain of ttk. A second method of degradation exists that is phyl-independent, this is mediated by recognition of motifs in the C-terminus of ttk.

Drosophila melanogaster (taxid: 7227)

>sp|Q9W0K4|BAB2_DROME Protein bric-a-brac 2 OS=Drosophila melanogaster GN=bab2 PE=1 SV=2

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 44/57 (77%), Gaps = 1/57 (1%)

Query: 3   SGD-QHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
           SG+ Q FCLRWNN+Q+ L +VF  LL S + VD  LS EG +I+AHK++LSACSPYF
Sbjct: 192 SGEGQQFCLRWNNYQSNLTNVFDELLQSESFVDVTLSCEGHSIKAHKMVLSACSPYF 248

Probably acts as a transcriptional regulator. Required for the specification of the tarsal segment. Also involved in antenna development.

Drosophila melanogaster (taxid: 7227)

>sp|Q01295|BRC1_DROME Broad-complex core protein isoforms 1/2/3/4/5 OS=Drosophila melanogaster GN=br PE=1 SV=2

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 51/83 (61%)

Query: 6  QHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIP 65
          QHFCLRWNN+Q+++ S F NL +    VD  L+ EG++I+AH+V+LSACSPYF   L   
Sbjct: 5  QHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVLSACSPYFRELLKST 64

Query: 66 KRGMPETFSPDLRFYETDGILPF 88
              P     D+ F +   ++ F
Sbjct: 65 PCKHPVILLQDVNFMDLHALVEF 87

Broad-complex proteins are required for puffing and transcription of salivary gland late genes during metamorphosis.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
158292857	911	AGAP005245-PA [Anopheles gambiae str. PE	0.893	0.092	0.559	7e-20
158292859	548	AGAP005245-PL [Anopheles gambiae str. PE	0.893	0.153	0.559	8e-20
158292843	550	AGAP005245-PK [Anopheles gambiae str. PE	0.893	0.152	0.559	1e-19
158292861	616	AGAP005245-PE [Anopheles gambiae str. PE	0.893	0.136	0.559	1e-19
158292845	502	AGAP005245-PD [Anopheles gambiae str. PE	0.893	0.167	0.559	1e-19
28573897	603	longitudinals lacking, isoform Q [Drosop	0.893	0.139	0.547	1e-19
198460523	609	GA25026 [Drosophila pseudoobscura pseudo	0.893	0.137	0.547	1e-19
195333183	612	GM20503 [Drosophila sechellia] gi|194125	0.893	0.137	0.547	1e-19
195153485	680	GL17189 [Drosophila persimilis] gi|19411	0.893	0.123	0.547	1e-19
29539391	603	Lola protein isoform B [Drosophila melan	0.893	0.139	0.547	1e-19

>gi|158292857|ref|XP_001688538.1| AGAP005245-PA [Anopheles gambiae str. PEST] gi|157017190|gb|EDO64121.1| AGAP005245-PA [Anopheles gambiae str. PEST]

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 47/84 (55%), Positives = 58/84 (69%)

Query: 5  DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI 64
          DQ FCLRWNNHQ+TLISVF  LL + TLVDC L+AEGK ++AHKV+LSACSPYFA  L  
Sbjct: 4  DQQFCLRWNNHQSTLISVFDTLLENGTLVDCTLAAEGKLLKAHKVVLSACSPYFATILSQ 63

Query: 65 PKRGMPETFSPDLRFYETDGILPF 88
               P     D++F E   ++ +
Sbjct: 64 QYDKHPIFILKDVKFQELRAMMDY 87

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158292859|ref|XP_001688539.1| AGAP005245-PL [Anopheles gambiae str. PEST] gi|157017191|gb|EDO64122.1| AGAP005245-PL [Anopheles gambiae str. PEST]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 47/84 (55%), Positives = 58/84 (69%)

Query: 5  DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI 64
          DQ FCLRWNNHQ+TLISVF  LL + TLVDC L+AEGK ++AHKV+LSACSPYFA  L  
Sbjct: 4  DQQFCLRWNNHQSTLISVFDTLLENGTLVDCTLAAEGKLLKAHKVVLSACSPYFATILSQ 63

Query: 65 PKRGMPETFSPDLRFYETDGILPF 88
               P     D++F E   ++ +
Sbjct: 64 QYDKHPIFILKDVKFQELRAMMDY 87

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158292843|ref|XP_001688534.1| AGAP005245-PK [Anopheles gambiae str. PEST] gi|157017183|gb|EDO64117.1| AGAP005245-PK [Anopheles gambiae str. PEST]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/84 (55%), Positives = 58/84 (69%)

Query: 5  DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI 64
          DQ FCLRWNNHQ+TLISVF  LL + TLVDC L+AEGK ++AHKV+LSACSPYFA  L  
Sbjct: 4  DQQFCLRWNNHQSTLISVFDTLLENGTLVDCTLAAEGKLLKAHKVVLSACSPYFATILSQ 63

Query: 65 PKRGMPETFSPDLRFYETDGILPF 88
               P     D++F E   ++ +
Sbjct: 64 QYDKHPIFILKDVKFQELRAMMDY 87

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158292861|ref|XP_001688540.1| AGAP005245-PE [Anopheles gambiae str. PEST] gi|157017192|gb|EDO64123.1| AGAP005245-PE [Anopheles gambiae str. PEST]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/84 (55%), Positives = 58/84 (69%)

Query: 5  DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI 64
          DQ FCLRWNNHQ+TLISVF  LL + TLVDC L+AEGK ++AHKV+LSACSPYFA  L  
Sbjct: 4  DQQFCLRWNNHQSTLISVFDTLLENGTLVDCTLAAEGKLLKAHKVVLSACSPYFATILSQ 63

Query: 65 PKRGMPETFSPDLRFYETDGILPF 88
               P     D++F E   ++ +
Sbjct: 64 QYDKHPIFILKDVKFQELRAMMDY 87

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158292845|ref|XP_001230985.2| AGAP005245-PD [Anopheles gambiae str. PEST] gi|157017184|gb|EAU76838.2| AGAP005245-PD [Anopheles gambiae str. PEST]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/84 (55%), Positives = 58/84 (69%)

Query: 5  DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI 64
          DQ FCLRWNNHQ+TLISVF  LL + TLVDC L+AEGK ++AHKV+LSACSPYFA  L  
Sbjct: 4  DQQFCLRWNNHQSTLISVFDTLLENGTLVDCTLAAEGKLLKAHKVVLSACSPYFATILSQ 63

Query: 65 PKRGMPETFSPDLRFYETDGILPF 88
               P     D++F E   ++ +
Sbjct: 64 QYDKHPIFILKDVKFQELRAMMDY 87

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28573897|ref|NP_788319.1| longitudinals lacking, isoform Q [Drosophila melanogaster] gi|28380930|gb|AAM68768.2| longitudinals lacking, isoform Q [Drosophila melanogaster] gi|281183401|gb|ADA53569.1| FI13033p [Drosophila melanogaster]

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 58/84 (69%)

Query: 5  DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI 64
          DQ FCLRWNNHQ+TLISVF  LL + TLVDC L+AEGK ++AHKV+LSACSPYFA  L  
Sbjct: 4  DQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQE 63

Query: 65 PKRGMPETFSPDLRFYETDGILPF 88
               P     D+++ E   ++ +
Sbjct: 64 QYDKHPIFILKDVKYQELRAMMDY 87

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198460523|ref|XP_002138845.1| GA25026 [Drosophila pseudoobscura pseudoobscura] gi|198137044|gb|EDY69403.1| GA25026 [Drosophila pseudoobscura pseudoobscura]

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 58/84 (69%)

Query: 5  DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI 64
          DQ FCLRWNNHQ+TLISVF  LL + TLVDC L+AEGK ++AHKV+LSACSPYFA  L  
Sbjct: 4  DQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQE 63

Query: 65 PKRGMPETFSPDLRFYETDGILPF 88
               P     D+++ E   ++ +
Sbjct: 64 QYDKHPIFILKDVKYQELRAMMDY 87

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195333183|ref|XP_002033271.1| GM20503 [Drosophila sechellia] gi|194125241|gb|EDW47284.1| GM20503 [Drosophila sechellia]

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 58/84 (69%)

Query: 5  DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI 64
          DQ FCLRWNNHQ+TLISVF  LL + TLVDC L+AEGK ++AHKV+LSACSPYFA  L  
Sbjct: 4  DQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQE 63

Query: 65 PKRGMPETFSPDLRFYETDGILPF 88
               P     D+++ E   ++ +
Sbjct: 64 QYDKHPIFILKDVKYQELRAMMDY 87

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195153485|ref|XP_002017656.1| GL17189 [Drosophila persimilis] gi|194113452|gb|EDW35495.1| GL17189 [Drosophila persimilis]

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 58/84 (69%)

Query: 5  DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI 64
          DQ FCLRWNNHQ+TLISVF  LL + TLVDC L+AEGK ++AHKV+LSACSPYFA  L  
Sbjct: 4  DQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQE 63

Query: 65 PKRGMPETFSPDLRFYETDGILPF 88
               P     D+++ E   ++ +
Sbjct: 64 QYDKHPIFILKDVKYQELRAMMDY 87

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|29539391|dbj|BAC67578.1| Lola protein isoform B [Drosophila melanogaster] gi|29539431|dbj|BAC67598.1| Lola protein isoform B [Drosophila melanogaster] gi|29539471|dbj|BAC67618.1| Lola protein isoform B [Drosophila melanogaster] gi|29539511|dbj|BAC67638.1| Lola protein isoform B [Drosophila melanogaster]

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 58/84 (69%)

Query: 5  DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI 64
          DQ FCLRWNNHQ+TLISVF  LL + TLVDC L+AEGK ++AHKV+LSACSPYFA  L  
Sbjct: 4  DQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQE 63

Query: 65 PKRGMPETFSPDLRFYETDGILPF 88
               P     D+++ E   ++ +
Sbjct: 64 QYDKHPIFILKDVKYQELRAMMDY 87

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
FB|FBgn0005630	970	lola "longitudinals lacking" [	0.893	0.086	0.547	8.6e-19
FB|FBgn0003870	813	ttk "tramtrack" [Drosophila me	0.925	0.107	0.426	2.1e-14
FB|FBgn0025525	1067	bab2 "bric a brac 2" [Drosophi	0.595	0.052	0.614	3.2e-14
FB|FBgn0000210	880	br "broad" [Drosophila melanog	0.882	0.094	0.433	3.8e-14
FB|FBgn0263108	798	BtbVII "BTB-protein-VII" [Dros	0.563	0.066	0.641	1.8e-13
FB|FBgn0004652	955	fru "fruitless" [Drosophila me	0.893	0.087	0.428	2.4e-13
FB|FBgn0264981	1089	mamo "maternal gene required f	0.893	0.077	0.459	3.6e-13
FB|FBgn0004870	977	bab1 "bric a brac 1" [Drosophi	0.914	0.088	0.395	1.7e-12
FB|FBgn0022238	127	lolal "lola like" [Drosophila	0.936	0.692	0.375	2.4e-12
FB|FBgn0263102	1085	psq "pipsqueak" [Drosophila me	0.893	0.077	0.448	3.8e-11

FB|FBgn0005630 lola "longitudinals lacking" [Drosophila melanogaster (taxid:7227)]

 Score = 238 (88.8 bits), Expect = 8.6e-19, P = 8.6e-19
 Identities = 46/84 (54%), Positives = 58/84 (69%)

Query:     5 DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI 64
             DQ FCLRWNNHQ+TLISVF  LL + TLVDC L+AEGK ++AHKV+LSACSPYFA  L  
Sbjct:     4 DQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQE 63

Query:    65 PKRGMPETFSPDLRFYETDGILPF 88
                  P     D+++ E   ++ +
Sbjct:    64 QYDKHPIFILKDVKYQELRAMMDY 87

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0007411 "axon guidance" evidence=IGI;NAS;IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0007409 "axonogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0016199 "axon midline choice point recognition" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019730 "antimicrobial humoral response" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0045467 "R7 cell development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0007464 "R3/R4 cell fate commitment" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0003870 ttk "tramtrack" [Drosophila melanogaster (taxid:7227)]

 Score = 196 (74.1 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 38/89 (42%), Positives = 57/89 (64%)

Query:     1 MESGDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF-A 59
             M+   Q FCLRWNNHQ+ L+SVF  LL++ T  D  L+ EG+ ++AHK++LSACSPYF  
Sbjct:     1 MKMASQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAVEGQHLKAHKMVLSACSPYFNT 60

Query:    60 VSLPIPKRGMPETFSPDLRFYETDGILPF 88
             + +  P++  P     D+ + +   +L F
Sbjct:    61 LFVSHPEKH-PIVILKDVPYSDMKSLLDF 88

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0007422 "peripheral nervous system development" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0045467 "R7 cell development" evidence=IMP;TAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046843 "dorsal appendage formation" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001709 "cell fate determination" evidence=TAS

GO:0017053 "transcriptional repressor complex" evidence=IPI

GO:0003682 "chromatin binding" evidence=IDA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0030707 "ovarian follicle cell development" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0035001 "dorsal trunk growth, open tracheal system" evidence=IMP

GO:0060446 "branching involved in open tracheal system development" evidence=IMP

GO:0016476 "regulation of embryonic cell shape" evidence=IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0042675 "compound eye cone cell differentiation" evidence=IMP

GO:0048053 "R1/R6 development" evidence=IMP

GO:0048750 "compound eye corneal lens morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

FB|FBgn0025525 bab2 "bric a brac 2" [Drosophila melanogaster (taxid:7227)]

 Score = 186 (70.5 bits), Expect = 3.2e-14, Sum P(2) = 3.2e-14
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query:     3 SGD-QHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
             SG+ Q FCLRWNN+Q+ L +VF  LL S + VD  LS EG +I+AHK++LSACSPYF
Sbjct:   192 SGEGQQFCLRWNNYQSNLTNVFDELLQSESFVDVTLSCEGHSIKAHKMVLSACSPYF 248

GO:0005515 "protein binding" evidence=IPI

GO:0006351 "transcription, DNA-dependent" evidence=IEP

GO:0008585 "female gonad development" evidence=IGI;IMP

GO:0005634 "nucleus" evidence=IDA;TAS

GO:0007455 "eye-antennal disc morphogenesis" evidence=ISS

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI;IMP

GO:0003677 "DNA binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0003680 "AT DNA binding" evidence=IDA

GO:0005701 "polytene chromosome chromocenter" evidence=IDA

FB|FBgn0000210 br "broad" [Drosophila melanogaster (taxid:7227)]

 Score = 194 (73.4 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 36/83 (43%), Positives = 51/83 (61%)

Query:     6 QHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIP 65
             QHFCLRWNN+Q+++ S F NL +    VD  L+ EG++I+AH+V+LSACSPYF   L   
Sbjct:     5 QHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVLSACSPYFRELLKST 64

Query:    66 KRGMPETFSPDLRFYETDGILPF 88
                 P     D+ F +   ++ F
Sbjct:    65 PCKHPVILLQDVNFMDLHALVEF 87

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA

GO:0007458 "progression of morphogenetic furrow involved in compound eye morphogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0007552 "metamorphosis" evidence=NAS;TAS

GO:0035071 "salivary gland cell autophagic cell death" evidence=NAS

GO:0035070 "salivary gland histolysis" evidence=NAS;IMP

GO:0001752 "compound eye photoreceptor fate commitment" evidence=IMP

GO:0035072 "ecdysone-mediated induction of salivary gland cell autophagic cell death" evidence=NAS

GO:0006914 "autophagy" evidence=IMP

GO:0008219 "cell death" evidence=TAS

GO:0040034 "regulation of development, heterochronic" evidence=IMP;TAS

GO:0009608 "response to symbiont" evidence=IMP

GO:0035075 "response to ecdysone" evidence=IMP

GO:0035193 "larval central nervous system remodeling" evidence=IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0007562 "eclosion" evidence=IEP

GO:0071390 "cellular response to ecdysone" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0048747 "muscle fiber development" evidence=IGI

GO:0048477 "oogenesis" evidence=IMP

GO:0048808 "male genitalia morphogenesis" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IMP

FB|FBgn0263108 BtbVII "BTB-protein-VII" [Drosophila melanogaster (taxid:7227)]

 Score = 187 (70.9 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 34/53 (64%), Positives = 42/53 (79%)

Query:     6 QHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
             Q FCLRWNNHQ   ISV  +LL++ TLVD  L+AEG+ +QAHK++LSACS YF
Sbjct:     4 QQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYF 56

GO:0003677 "DNA binding" evidence=IEA;NAS

FB|FBgn0004652 fru "fruitless" [Drosophila melanogaster (taxid:7227)]

 Score = 187 (70.9 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 36/84 (42%), Positives = 48/84 (57%)

Query:     5 DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI 64
             DQ FCLRWNNH   L  V  +LL    L D  L+ EG+T++AH+ +LSACSPYF      
Sbjct:   103 DQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSACSPYFETIFLQ 162

Query:    65 PKRGMPETFSPDLRFYETDGILPF 88
              +   P  +  D+R+ E   +L F
Sbjct:   163 NQHPHPIIYLKDVRYSEMRSLLDF 186

GO:0016545 "male courtship behavior, veined wing vibration" evidence=IMP

GO:0008049 "male courtship behavior" evidence=NAS;IMP;TAS

GO:0007618 "mating" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;TAS

GO:0045433 "male courtship behavior, veined wing generated song production" evidence=IMP;TAS

GO:0007517 "muscle organ development" evidence=IMP

GO:0007530 "sex determination" evidence=IMP;TAS

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0005634 "nucleus" evidence=NAS

GO:0007617 "mating behavior" evidence=IMP

GO:0016543 "male courtship behavior, orientation prior to leg tapping and wing vibration" evidence=NAS

GO:0007620 "copulation" evidence=NAS;TAS

GO:0007417 "central nervous system development" evidence=IMP;TAS

GO:0046661 "male sex differentiation" evidence=TAS

GO:0048047 "mating behavior, sex discrimination" evidence=IGI;IMP;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0002118 "aggressive behavior" evidence=IMP

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

FB|FBgn0264981 mamo "maternal gene required for meiosis" [Drosophila melanogaster (taxid:7227)]

 Score = 186 (70.5 bits), Expect = 3.6e-13, P = 3.6e-13
 Identities = 40/87 (45%), Positives = 56/87 (64%)

Query:     4 GDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCAL-SAEGKTIQAHKVLLSACSPYF-AVS 61
             G +H+CLRWNN+Q+ L+ VF  LL   +LVD  L  +EG +I+AHKV+LSACS YF ++ 
Sbjct:     2 GSEHYCLRWNNYQSNLLGVFSQLLQDGSLVDVTLVCSEGTSIRAHKVVLSACSSYFQSLF 61

Query:    62 LPIPKRGMPETFSPDLRFYETDGILPF 88
             L  P+ G       D+RF E   ++ F
Sbjct:    62 LEHPE-GHLIVILKDVRFAELQTLVEF 87

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0035041 "sperm chromatin decondensation" evidence=IMP

GO:0007143 "female meiosis" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0007276 "gamete generation" evidence=IMP

FB|FBgn0004870 bab1 "bric a brac 1" [Drosophila melanogaster (taxid:7227)]

 Score = 179 (68.1 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 34/86 (39%), Positives = 50/86 (58%)

Query:     3 SGDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSL 62
             S  Q FCLRWNN+Q  L ++F  LL +   VD  L+ +G++++AHK++LSACSPYF   L
Sbjct:    97 SSSQQFCLRWNNYQTNLTTIFDQLLQNECFVDVTLACDGRSMKAHKMVLSACSPYFQTLL 156

Query:    63 PIPKRGMPETFSPDLRFYETDGILPF 88
                    P     D+ + +   I+ F
Sbjct:   157 AETPCQHPIVIMRDVNWSDLKAIVEF 182

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0006351 "transcription, DNA-dependent" evidence=IEP;ISS

GO:0007548 "sex differentiation" evidence=IGI;IMP;TAS

GO:0048071 "sex-specific pigmentation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0048092 "negative regulation of male pigmentation" evidence=NAS

GO:0046660 "female sex differentiation" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI;IMP

GO:0008585 "female gonad development" evidence=IGI;IMP

GO:0007455 "eye-antennal disc morphogenesis" evidence=IEP

GO:0003677 "DNA binding" evidence=NAS

GO:0048070 "regulation of developmental pigmentation" evidence=TAS

GO:0048086 "negative regulation of developmental pigmentation" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0003680 "AT DNA binding" evidence=IDA

FB|FBgn0022238 lolal "lola like" [Drosophila melanogaster (taxid:7227)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 33/88 (37%), Positives = 48/88 (54%)

Query:     1 MESGDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAV 60
             M S DQ F L+WN+ Q  +++ F +L +  +  D  L+ EG+T +AHK++LSACSPYF  
Sbjct:     1 MMSSDQQFFLKWNDFQTNMVTSFRHLRDEKSFTDVTLACEGQTCKAHKMVLSACSPYFKA 60

Query:    61 SLPIPKRGMPETFSPDLRFYETDGILPF 88
              L       P     D+ +     IL F
Sbjct:    61 LLEENPSKHPIIILKDVSYIHLQAILEF 88

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0006342 "chromatin silencing" evidence=IMP

GO:0016458 "gene silencing" evidence=IMP

GO:0031519 "PcG protein complex" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0007435 "salivary gland morphogenesis" evidence=IMP

FB|FBgn0263102 psq "pipsqueak" [Drosophila melanogaster (taxid:7227)]

 Score = 167 (63.8 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 39/87 (44%), Positives = 52/87 (59%)

Query:     4 GDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFA-VSL 62
             G Q+F LRWNN+QNT+ SVF  L    + VD  LS E  +++AHKV+LSACS YF  + L
Sbjct:     6 GHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLL 65

Query:    63 PIPKRGMPETFSP-DLRFYETDGILPF 88
               P +  P    P D+ F +   I+ F
Sbjct:    66 ENPCKH-PTIILPADIIFTDLKTIIDF 91

GO:0007315 "pole plasm assembly" evidence=NAS

GO:0005634 "nucleus" evidence=IDA;TAS

GO:0003677 "DNA binding" evidence=NAS;TAS

GO:0006342 "chromatin silencing" evidence=IMP

GO:0031519 "PcG protein complex" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0016458 "gene silencing" evidence=TAS

GO:0008595 "anterior/posterior axis specification, embryo" evidence=IMP

GO:0042048 "olfactory behavior" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0031935 "regulation of chromatin silencing" evidence=IMP

GO:0009880 "embryonic pattern specification" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	94
pfam00651	101	pfam00651, BTB, BTB/POZ domain	3e-09
smart00225	97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	1e-05
PHA02713	557	PHA02713, PHA02713, hypothetical protein; Provisio	0.003

>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain

 Score = 49.2 bits (118), Expect = 3e-09
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 23 FHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
           + L  +  L D  L    K   AHK +L+ACSPYF
Sbjct: 1  LNELRENGELCDVTLVVGDKEFHAHKAVLAACSPYF 36

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101

>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 34 DCALSAEGKTIQAHKVLLSACSPYF 58
          D  L   GK   AHK +L+A SPYF
Sbjct: 1  DVTLVVGGKKFHAHKAVLAAHSPYF 25

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97

>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 15 HQNTLISVFHNLLNSSTLVDCALS-AEGKTIQAHKVLLSACSPYFAVSLPIP 65
          H   ++S   NLL+   L D  ++  +G+ I+AHK +L+A S YF      P
Sbjct: 8  HNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTP 59

Length = 557

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	94
PHA02713	557	hypothetical protein; Provisional	99.86
KOG4441|consensus	571		99.85
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	99.75
PHA02790	480	Kelch-like protein; Provisional	99.73
KOG4350|consensus	620		99.72
PHA03098	534	kelch-like protein; Provisional	99.69
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	99.63
KOG4591|consensus	280		99.37
KOG2075|consensus	521		99.35
KOG0783|consensus	1267		99.12
KOG2838|consensus	401		98.87
KOG4682|consensus	488		98.46
KOG0783|consensus	1267		98.4
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	97.6
KOG2838|consensus	401		97.47
KOG0511|consensus	516		96.84
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	96.65
KOG0511|consensus	516		96.62
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	96.53
KOG2716|consensus	230		95.8
KOG3473|consensus	112		93.74
KOG1987|consensus	297		93.61
KOG2714|consensus	465		92.52
KOG1724|consensus	162		83.37
PF09593	117	Pathogen_betaC1: Beta-satellite pathogenicity beta	80.08

>PHA02713 hypothetical protein; Provisional

Probab=99.86  E-value=6.7e-22  Score=142.64  Aligned_cols=84  Identities=23%  Similarity=0.292  Sum_probs=76.4

Q ss_pred             eeCCcHHHHHHHHHHHHhCCCcccEEEEeC-CeEEEhhHHHhhccCHHHHhhCCC--CCC-CCCeEEcCCCCHHHHHHhh
Q psy16401         11 RWNNHQNTLISVFHNLLNSSTLVDCALSAE-GKTIQAHKVLLSACSPYFAVSLPI--PKR-GMPETFSPDLRFYETDGIL   86 (94)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~-~~~~~~Hk~vL~a~S~~f~~~f~~--~~~-~~~~i~l~~~~~~~~~~lL   86 (94)
                      ..+.|+..+++.|+++|.++.+|||+|.++ |+.|+|||.||||+|+||++||++  .+. .+.+|.|+++++++++.+|
T Consensus         4 ~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll   83 (557)
T PHA02713          4 DDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIV   83 (557)
T ss_pred             chhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHH
Confidence            346889999999999999999999999997 899999999999999999999965  433 4788999999999999999


Q ss_pred             cccccCCC
Q psy16401         87 PFAREDLL   94 (94)
Q Consensus        87 ~f~Ytg~l   94 (94)
                      +|+|||+|
T Consensus        84 ~y~Yt~~i   91 (557)
T PHA02713         84 QYLYNRHI   91 (557)
T ss_pred             HHhcCCCC
Confidence            99999974

>KOG4441|consensus

Probab=99.85  E-value=1.5e-21  Score=141.15  Aligned_cols=89  Identities=22%  Similarity=0.295  Sum_probs=82.9

Q ss_pred             cceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcCCCCHHHHH
Q psy16401          6 QHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSPDLRFYETD   83 (94)
Q Consensus         6 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~~~~~~~~~   83 (94)
                      ....+..+.|...+++.|+.+|.++.+|||++.+++++|+|||.||||+|+||++||++  .+..+.+|.+.++++..++
T Consensus        10 ~~~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~   89 (571)
T KOG4441|consen   10 STSEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLE   89 (571)
T ss_pred             cccccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHH
Confidence            33456678999999999999999999999999999999999999999999999999974  8899999999999999999


Q ss_pred             HhhcccccCCC
Q psy16401         84 GILPFAREDLL   94 (94)
Q Consensus        84 ~lL~f~Ytg~l   94 (94)
                      .+|+|+|||++
T Consensus        90 ~ll~y~Yt~~i  100 (571)
T KOG4441|consen   90 LLLDYAYTGKL  100 (571)
T ss_pred             HHHHHhhcceE
Confidence            99999999975

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=99.75  E-value=1.1e-18  Score=101.76  Aligned_cols=72  Identities=28%  Similarity=0.426  Sum_probs=60.8

Q ss_pred             HHHHHhCCCcccEEEEeC-CeEEEhhHHHhhccCHHHHhhCCCC-CCC--CCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401         23 FHNLLNSSTLVDCALSAE-GKTIQAHKVLLSACSPYFAVSLPIP-KRG--MPETFSPDLRFYETDGILPFAREDLL   94 (94)
Q Consensus        23 l~~~~~~~~~~Dv~~~~~-~~~~~~Hk~vL~a~S~~f~~~f~~~-~~~--~~~i~l~~~~~~~~~~lL~f~Ytg~l   94 (94)
                      |+++++++.++|++|.++ ++.|+|||.||+++|+||+.+|... ...  ..++.+++++++.++.+|+|+|+|++
T Consensus         1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~   76 (111)
T PF00651_consen    1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEI   76 (111)
T ss_dssp             HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEE
T ss_pred             ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcc
Confidence            578899999999999999 7999999999999999999999765 222  34688999999999999999999863

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>PHA02790 Kelch-like protein; Provisional

Probab=99.73  E-value=4.6e-18  Score=120.98  Aligned_cols=73  Identities=16%  Similarity=0.153  Sum_probs=60.7

Q ss_pred             HHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEc--CCCCHHHHHHhhcccccCCC
Q psy16401         20 ISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFS--PDLRFYETDGILPFAREDLL   94 (94)
Q Consensus        20 ~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l--~~~~~~~~~~lL~f~Ytg~l   94 (94)
                      .+.+-.++..+.+|||++.+| ++|+|||.|||++|+||++||++  .|+.+ +|.+  .+++++.++.+|+|+|||+|
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l   86 (480)
T PHA02790         10 CKNILALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKV   86 (480)
T ss_pred             hhhHHHHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeE
Confidence            455667888999999887766 58999999999999999999964  45543 4544  49999999999999999975

>KOG4350|consensus

Probab=99.72  E-value=3.4e-18  Score=118.40  Aligned_cols=81  Identities=20%  Similarity=0.260  Sum_probs=73.6

Q ss_pred             CcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhC--CCCCCCCCeEEcCCCCHHHHHHhhccccc
Q psy16401         14 NHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSL--PIPKRGMPETFSPDLRFYETDGILPFARE   91 (94)
Q Consensus        14 ~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f--~~~~~~~~~i~l~~~~~~~~~~lL~f~Yt   91 (94)
                      +-++.+.+.+.+++....++||+++++++.|||||+|||++|.|||+++  ++.++.+..|.+++...++|+.+|+|+||
T Consensus        26 ~i~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYt  105 (620)
T KOG4350|consen   26 AISNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYT  105 (620)
T ss_pred             hhccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhh
Confidence            3445567888999999999999999999999999999999999999999  44788899999999999999999999999


Q ss_pred             CCC
Q psy16401         92 DLL   94 (94)
Q Consensus        92 g~l   94 (94)
                      |++
T Consensus       106 g~~  108 (620)
T KOG4350|consen  106 GKI  108 (620)
T ss_pred             cce
Confidence            975

>PHA03098 kelch-like protein; Provisional

Probab=99.69  E-value=3.1e-17  Score=117.50  Aligned_cols=64  Identities=17%  Similarity=0.239  Sum_probs=59.0

Q ss_pred             CCCcccEEEEe--CCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401         29 SSTLVDCALSA--EGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFAREDLL   94 (94)
Q Consensus        29 ~~~~~Dv~~~~--~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l   94 (94)
                      ++.+||++|.+  +|+.|+|||.||+++|+||++||.+... ..+|.+++ +++.|+.+|+|+|||++
T Consensus         6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~-~~~i~l~~-~~~~~~~~l~y~Ytg~~   71 (534)
T PHA03098          6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK-ENEINLNI-DYDSFNEVIKYIYTGKI   71 (534)
T ss_pred             cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC-CceEEecC-CHHHHHHHHHHhcCCce
Confidence            78899999998  9999999999999999999999976444 78899999 99999999999999975

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=99.63  E-value=1.3e-15  Score=84.77  Aligned_cols=61  Identities=31%  Similarity=0.477  Sum_probs=55.2

Q ss_pred             cEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCC--CCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401         34 DCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKR--GMPETFSPDLRFYETDGILPFAREDLL   94 (94)
Q Consensus        34 Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~--~~~~i~l~~~~~~~~~~lL~f~Ytg~l   94 (94)
                      |+++.++|+.|++||.+|+++|+||+.++.....  ....+.+++.++..|+.+|+|+|+|++
T Consensus         1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~   63 (90)
T smart00225        1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKL   63 (90)
T ss_pred             CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCcee
Confidence            7889999999999999999999999999976333  678899999999999999999999864

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>KOG4591|consensus

Probab=99.37  E-value=1e-12  Score=84.22  Aligned_cols=81  Identities=20%  Similarity=0.243  Sum_probs=69.2

Q ss_pred             CCcHHHHHHHHHHHHhCCCcccEEEEeC---CeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhhccc
Q psy16401         13 NNHQNTLISVFHNLLNSSTLVDCALSAE---GKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFA   89 (94)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~~~~Dv~~~~~---~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL~f~   89 (94)
                      ..+.+.++.-..+++.++.|+|+++.++   ++.++|||.||||+|++.+-- ++...+..+..+++.+++++...|+|+
T Consensus        47 dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wkfa-N~~dekse~~~~dDad~Ea~~t~iRWI  125 (280)
T KOG4591|consen   47 DSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKFA-NGGDEKSEELDLDDADFEAFHTAIRWI  125 (280)
T ss_pred             hhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhhc-cCCCcchhhhcccccCHHHHHHhheee
Confidence            4678888888899999999999999998   478999999999999987622 334455667888999999999999999


Q ss_pred             ccCCC
Q psy16401         90 REDLL   94 (94)
Q Consensus        90 Ytg~l   94 (94)
                      ||++|
T Consensus       126 YTDEi  130 (280)
T KOG4591|consen  126 YTDEI  130 (280)
T ss_pred             ecccc
Confidence            99975

>KOG2075|consensus

Probab=99.35  E-value=2.1e-12  Score=90.94  Aligned_cols=86  Identities=22%  Similarity=0.244  Sum_probs=75.4

Q ss_pred             EEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCC-----eEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcCCCCHHH
Q psy16401          9 CLRWNNHQNTLISVFHNLLNSSTLVDCALSAEG-----KTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSPDLRFYE   81 (94)
Q Consensus         9 ~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~-----~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~~~~~~~   81 (94)
                      .++|......+..+.-.++++...+|+.+++++     +.+||||.||+..|.+|.+||.+  .+....+|.++++.+..
T Consensus        91 ~~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaa  170 (521)
T KOG2075|consen   91 IPNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAA  170 (521)
T ss_pred             CcccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhH
Confidence            456777778888888899999999999999973     67999999999999999999965  44457899999999999


Q ss_pred             HHHhhcccccCCC
Q psy16401         82 TDGILPFAREDLL   94 (94)
Q Consensus        82 ~~~lL~f~Ytg~l   94 (94)
                      |..+|+|+|+.++
T Consensus       171 Fl~~L~flYsdev  183 (521)
T KOG2075|consen  171 FLAFLRFLYSDEV  183 (521)
T ss_pred             hHHHHHHHhcchh
Confidence            9999999999753

>KOG0783|consensus

Probab=99.12  E-value=5.5e-11  Score=88.55  Aligned_cols=66  Identities=17%  Similarity=0.170  Sum_probs=55.4

Q ss_pred             hCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCC--CC------------CCCCeEEcCCCCHHHHHHhhcccccCC
Q psy16401         28 NSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI--PK------------RGMPETFSPDLRFYETDGILPFAREDL   93 (94)
Q Consensus        28 ~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~--~~------------~~~~~i~l~~~~~~~~~~lL~f~Ytg~   93 (94)
                      ....+.||+|.||+..|+|||.||+++|++|+.+|..  +.            .....|.++++++..|+.+|.|+||+.
T Consensus       554 ~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt  633 (1267)
T KOG0783|consen  554 YKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDT  633 (1267)
T ss_pred             cccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhccc
Confidence            3567899999999999999999999999999999832  11            223456688999999999999999985

>KOG2838|consensus

Probab=98.87  E-value=2e-09  Score=72.06  Aligned_cols=81  Identities=14%  Similarity=0.155  Sum_probs=67.7

Q ss_pred             CCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCe----EEcCCCCHHHHHHhhcc
Q psy16401         13 NNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPE----TFSPDLRFYETDGILPF   88 (94)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~----i~l~~~~~~~~~~lL~f   88 (94)
                      .....++++++.+.+......|+-+....+.|||||++|+++||+|+.+.+..+....+    +..-+++.+.|+.+|.+
T Consensus       111 R~ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~  190 (401)
T KOG2838|consen  111 RKEANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHS  190 (401)
T ss_pred             CcchhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHH
Confidence            34567778888888877788899999999999999999999999999988775555443    44559999999999999


Q ss_pred             cccCC
Q psy16401         89 AREDL   93 (94)
Q Consensus        89 ~Ytg~   93 (94)
                      +|||+
T Consensus       191 l~tgE  195 (401)
T KOG2838|consen  191 LITGE  195 (401)
T ss_pred             HHhcc
Confidence            99996

>KOG4682|consensus

Probab=98.46  E-value=1.6e-07  Score=65.72  Aligned_cols=70  Identities=21%  Similarity=0.161  Sum_probs=60.3

Q ss_pred             HHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEc----CCCCHHHHHHhhcccccCCC
Q psy16401         24 HNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFS----PDLRFYETDGILPFAREDLL   94 (94)
Q Consensus        24 ~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l----~~~~~~~~~~lL~f~Ytg~l   94 (94)
                      +.++.++.-+||++.+-|.+++.||.-|. .|+||.+||.+  .++....|.+    |+++.+++..++.-+|.++|
T Consensus        61 q~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEv  136 (488)
T KOG4682|consen   61 QNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEV  136 (488)
T ss_pred             HHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhe
Confidence            46788999999999999999999999998 58999999976  5666666555    38999999999999998865

>KOG0783|consensus

Probab=98.40  E-value=5.1e-08  Score=73.21  Aligned_cols=60  Identities=22%  Similarity=0.290  Sum_probs=46.4

Q ss_pred             cccEEEEe-CCeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcCCCCHHHHHHhhccccc
Q psy16401         32 LVDCALSA-EGKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSPDLRFYETDGILPFARE   91 (94)
Q Consensus        32 ~~Dv~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~lL~f~Yt   91 (94)
                      .-|+.|.+ +|+.++||+++|+|+.+||..||..  .|+....+....+..+.++.+|+|+|+
T Consensus       710 ~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs  772 (1267)
T KOG0783|consen  710 TMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYS  772 (1267)
T ss_pred             ceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHc
Confidence            34666666 6777999999999999999999965  333334444445669999999999995

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=97.60  E-value=0.00021  Score=37.76  Aligned_cols=55  Identities=9%  Similarity=0.042  Sum_probs=42.2

Q ss_pred             EEEEe-CCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhhcccc
Q psy16401         35 CALSA-EGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFAR   90 (94)
Q Consensus        35 v~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL~f~Y   90 (94)
                      ++++. +|+.|.+.+.+.. .|..++.++.........|.+++++...++.+++|++
T Consensus         3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~   58 (62)
T PF03931_consen    3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCE   58 (62)
T ss_dssp             EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHH
T ss_pred             EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhcccccccccCccCHHHHHHHHHHHH
Confidence            34444 7788999888877 7899999995433332389999999999999999985

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>KOG2838|consensus

Probab=97.47  E-value=0.00014  Score=49.24  Aligned_cols=77  Identities=21%  Similarity=0.144  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhCCCcccEEE-E-eCC--------------eEEEhhHHHhhccCHHHHhhCC-----CCC------CCCC
Q psy16401         18 TLISVFHNLLNSSTLVDCAL-S-AEG--------------KTIQAHKVLLSACSPYFAVSLP-----IPK------RGMP   70 (94)
Q Consensus        18 ~~~~~l~~~~~~~~~~Dv~~-~-~~~--------------~~~~~Hk~vL~a~S~~f~~~f~-----~~~------~~~~   70 (94)
                      .+-.+++.++......|+.+ . ++|              .+++||+.|.+++|++||.++.     +++      ....
T Consensus       221 kLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~Pk  300 (401)
T KOG2838|consen  221 KLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPK  300 (401)
T ss_pred             hhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCc
Confidence            33445556666655555444 2 232              3688999999999999999882     111      2334


Q ss_pred             eEEcC-CCCHHHH-HHhhcccccCCC
Q psy16401         71 ETFSP-DLRFYET-DGILPFAREDLL   94 (94)
Q Consensus        71 ~i~l~-~~~~~~~-~~lL~f~Ytg~l   94 (94)
                      .|.+. -+=|..+ -.+|.++||+.+
T Consensus       301 RIifdE~I~PkafA~i~lhclYTD~l  326 (401)
T KOG2838|consen  301 RIIFDELIFPKAFAPIFLHCLYTDRL  326 (401)
T ss_pred             eeechhhhcchhhhhhhhhhheeccc
Confidence            55554 2333333 357889999864

>KOG0511|consensus

Probab=96.84  E-value=0.00028  Score=49.67  Aligned_cols=60  Identities=20%  Similarity=0.069  Sum_probs=45.3

Q ss_pred             ccEEEEe-CCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhhcccccC
Q psy16401         33 VDCALSA-EGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFARED   92 (94)
Q Consensus        33 ~Dv~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL~f~Ytg   92 (94)
                      .|+.+.. +|+.|.||+..|+++|++|..-+.+......+|.-..+-+..|..+|+|+|-.
T Consensus       150 ~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~heI~~~~v~~~~f~~flk~lyl~  210 (516)
T KOG0511|consen  150 HDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQGHEIEAHRVILSAFSPFLKQLYLN  210 (516)
T ss_pred             cchHHHhhccccccHHHHHHHhhhcccCchhhhhccccCchhhhhhhHhhhhHHHHHHHHh
Confidence            4777755 67889999999999999987655443344455655567888999999999853

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=96.65  E-value=0.0019  Score=36.55  Aligned_cols=56  Identities=18%  Similarity=0.119  Sum_probs=43.6

Q ss_pred             EEEEeCCeEEEhhHHHhh-ccCHHHHhhCCCC-----CCCCCeEEcCCCCHHHHHHhhccccc
Q psy16401         35 CALSAEGKTIQAHKVLLS-ACSPYFAVSLPIP-----KRGMPETFSPDLRFYETDGILPFARE   91 (94)
Q Consensus        35 v~~~~~~~~~~~Hk~vL~-a~S~~f~~~f~~~-----~~~~~~i~l~~~~~~~~~~lL~f~Yt   91 (94)
                      |.+.|||+.|.+-+..|. ...++|..++...     ......+-+ +-+|..|+.||+|+-+
T Consensus         1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~   62 (94)
T PF02214_consen    1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRT   62 (94)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHH
T ss_pred             CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhh
Confidence            678999999999999998 5567888887532     344556665 5799999999999988

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>KOG0511|consensus

Probab=96.62  E-value=0.0012  Score=46.56  Aligned_cols=51  Identities=18%  Similarity=0.012  Sum_probs=40.2

Q ss_pred             eEEEhhHHHhhccCHHHHhhCCC--CC----CCCCeEEcCCCCHHHHHHhhcccccCC
Q psy16401         42 KTIQAHKVLLSACSPYFAVSLPI--PK----RGMPETFSPDLRFYETDGILPFAREDL   93 (94)
Q Consensus        42 ~~~~~Hk~vL~a~S~~f~~~f~~--~~----~~~~~i~l~~~~~~~~~~lL~f~Ytg~   93 (94)
                      ..+|||..+++. ++||+.||.+  .+    ..-+...+|+....+.+.+++|+|+.+
T Consensus       301 ~RyP~hla~i~R-~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~  357 (516)
T KOG0511|consen  301 DRYPAHLARILR-VEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQ  357 (516)
T ss_pred             ccccHHHHHHHH-HHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhccc
Confidence            459999999985 6899999965  22    223455777889999999999999875

>smart00512 Skp1 Found in Skp1 protein family

Probab=96.53  E-value=0.0057  Score=35.34  Aligned_cols=56  Identities=7%  Similarity=0.097  Sum_probs=42.9

Q ss_pred             EEEEe-CCeEEEhhHHHhhccCHHHHhhCCC---CCCCCCeEEcCCCCHHHHHHhhccccc
Q psy16401         35 CALSA-EGKTIQAHKVLLSACSPYFAVSLPI---PKRGMPETFSPDLRFYETDGILPFARE   91 (94)
Q Consensus        35 v~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~---~~~~~~~i~l~~~~~~~~~~lL~f~Yt   91 (94)
                      +++.. +|..|.+.+.+.. .|..++.++..   .......|.+++++...++.+++|++-
T Consensus         4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~   63 (104)
T smart00512        4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEH   63 (104)
T ss_pred             EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHH
Confidence            44544 7788999999774 78899998843   112225899999999999999999953

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>KOG2716|consensus

Probab=95.80  E-value=0.024  Score=37.54  Aligned_cols=58  Identities=22%  Similarity=0.267  Sum_probs=46.3

Q ss_pred             EEEEeCCeEEEhhHHHhhccCHHHHhhCCCC---CC-CCCeEEcCCCCHHHHHHhhcccccCC
Q psy16401         35 CALSAEGKTIQAHKVLLSACSPYFAVSLPIP---KR-GMPETFSPDLRFYETDGILPFAREDL   93 (94)
Q Consensus        35 v~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~---~~-~~~~i~l~~~~~~~~~~lL~f~Ytg~   93 (94)
                      +.+-+||+.|...+.-|.....+|+.|+...   +. ....|-+ |=+|.-|+.+|.||-.|.
T Consensus         7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGd   68 (230)
T KOG2716|consen    7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGD   68 (230)
T ss_pred             EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhccc
Confidence            4578999999999999999999999999653   22 2233444 679999999999998775

>KOG3473|consensus

Probab=93.74  E-value=0.13  Score=29.76  Aligned_cols=54  Identities=9%  Similarity=0.061  Sum_probs=40.4

Q ss_pred             EEEEe-CCeEEEhhHHHhhccCHHHHhhCCC----CCCCCCeEEcCCCCHHHHHHhhccc
Q psy16401         35 CALSA-EGKTIQAHKVLLSACSPYFAVSLPI----PKRGMPETFSPDLRFYETDGILPFA   89 (94)
Q Consensus        35 v~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~----~~~~~~~i~l~~~~~~~~~~lL~f~   89 (94)
                      |.++. +|.+|-.-|. +|.-|.-.|+|+.+    .+...+++.+++++...++.+-+|+
T Consensus        19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl   77 (112)
T KOG3473|consen   19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYL   77 (112)
T ss_pred             eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHh
Confidence            44444 4556655544 45568899999964    4667789999999999999999887

>KOG1987|consensus

Probab=93.61  E-value=0.025  Score=38.14  Aligned_cols=53  Identities=17%  Similarity=0.004  Sum_probs=42.6

Q ss_pred             CCeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcCCCCHHHHHHhhcccccC
Q psy16401         40 EGKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSPDLRFYETDGILPFARED   92 (94)
Q Consensus        40 ~~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~lL~f~Ytg   92 (94)
                      +++.+.+|+.++++++++|+.++..  .+.....+.+.+..+..++.+..|.|+.
T Consensus       108 ~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~  162 (297)
T KOG1987|consen  108 SNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLP  162 (297)
T ss_pred             cCcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEec
Confidence            3567999999999999999999854  2333445577888999999999999974

>KOG2714|consensus

Probab=92.52  E-value=0.32  Score=35.10  Aligned_cols=59  Identities=20%  Similarity=0.149  Sum_probs=44.1

Q ss_pred             EEEEeCCeEEEhhHHHhhccC--HHHHhhCCC----CCCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401         35 CALSAEGKTIQAHKVLLSACS--PYFAVSLPI----PKRGMPETFSPDLRFYETDGILPFAREDLL   94 (94)
Q Consensus        35 v~~~~~~~~~~~Hk~vL~a~S--~~f~~~f~~----~~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l   94 (94)
                      |.+.|||+.|.--+.-|+...  .+|-+++.+    ...+...|-+ +=+|+.|..||+|+-||+|
T Consensus        13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L   77 (465)
T KOG2714|consen   13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDL   77 (465)
T ss_pred             EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCC
Confidence            678899999998888877655  688888853    2222233433 6789999999999999975

>KOG1724|consensus

Probab=83.37  E-value=1.6  Score=27.49  Aligned_cols=52  Identities=6%  Similarity=0.081  Sum_probs=37.5

Q ss_pred             eCCeEEEhhHHHhhccCHHHHhhCCCCCCCC--CeEEcCCCCHHHHHHhhccccc
Q psy16401         39 AEGKTIQAHKVLLSACSPYFAVSLPIPKRGM--PETFSPDLRFYETDGILPFARE   91 (94)
Q Consensus        39 ~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~--~~i~l~~~~~~~~~~lL~f~Yt   91 (94)
                      .+|+.|.+-..+.. .|..+..++.......  ..|.+++|+...|..+|+|++-
T Consensus        12 sDG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~   65 (162)
T KOG1724|consen   12 SDGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKK   65 (162)
T ss_pred             cCCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHH
Confidence            36778887777665 4666666663222222  5899999999999999999974

>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east

Probab=80.08  E-value=1  Score=26.90  Aligned_cols=59  Identities=22%  Similarity=0.113  Sum_probs=37.2

Q ss_pred             cEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcC---CCCHHHHHHhhcccccCC
Q psy16401         34 DCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSP---DLRFYETDGILPFAREDL   93 (94)
Q Consensus        34 Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~---~~~~~~~~~lL~f~Ytg~   93 (94)
                      ||.+. ++..+.+|--+++.+||.+...=..-+=....+..|   +--.+.++..|+++|.|.
T Consensus        15 dVrl~-~~~~i~V~i~l~ST~sP~l~k~~f~IpY~~~~ii~PFDFNglEe~I~~~l~~mY~~s   76 (117)
T PF09593_consen   15 DVRLM-EDMSIFVHIQLFSTRSPALIKKKFIIPYTHEGIIPPFDFNGLEEGIKNTLKIMYKDS   76 (117)
T ss_pred             EEEec-CCCEEEEEEEEEECCChHHheEEEEEeccCCCeECCcccCcHHHHHHHHHHHHhCCC
Confidence            44443 567899999999999998853211111111223222   455678899999999873

The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	94
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	1e-12
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	1e-12
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	8e-12
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	1e-11
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	3e-11
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	3e-11
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	3e-11
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	7e-11
2vpk_A	116	Myoneurin; transcription regulation, transcription	7e-11
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	8e-11
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	2e-10
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	2e-10
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	2e-10
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	3e-10
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	4e-10
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	6e-10
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	1e-09
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	7e-09
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	9e-09
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	3e-08

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127

 Score = 58.0 bits (141), Expect = 1e-12
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 4  GDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
          G     +++  H + ++   + L +   L D  +    +  +AHK +L ACS  F
Sbjct: 1  GSADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLF 55

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144

 Score = 58.5 bits (142), Expect = 1e-12
 Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 11/83 (13%)

Query: 1  MESGDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAV 60
               Q   +    H   L+    +    S   D  L  +G+ I   K +L+A SPY   
Sbjct: 16 ENLYFQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYI-- 73

Query: 61 SLPIPKRGMPETFSPDLRFYETD 83
                R      + +    +  
Sbjct: 74 ------RTK---LNYNPPKDDGS 87

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125

 Score = 55.7 bits (135), Expect = 8e-12
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 2  ESGDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
            G   +      H   ++   ++      L D  L  E K  +AH+ +L+ACS YF
Sbjct: 2  PLGSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYF 58

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120

 Score = 55.3 bits (134), Expect = 1e-11
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 9  CLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
           + + +H + ++S  +       L D  +  EG+    H+ +L+ACS YF
Sbjct: 2  GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYF 51

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124

 Score = 54.5 bits (132), Expect = 3e-11
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 11 RWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
            + H   ++   ++      L D  +  EG+  +AH+ +L+ACS YF
Sbjct: 8  ESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYF 55

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138

 Score = 54.6 bits (132), Expect = 3e-11
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 2  ESGDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
          ES    +    + H   ++   ++      L D  +  EG+  +AH+ +L+ACS YF
Sbjct: 8  ESAVFAYE--SSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYF 62

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256

 Score = 56.1 bits (136), Expect = 3e-11
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 11/69 (15%)

Query: 13 NNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPET 72
            H   L+    +    S   D  L  +G+ I   K +L+A SPY         R     
Sbjct: 12 PQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYI--------RTK--- 60

Query: 73 FSPDLRFYE 81
           + +    +
Sbjct: 61 LNYNPPKDD 69

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129

 Score = 53.4 bits (129), Expect = 7e-11
 Identities = 12/56 (21%), Positives = 24/56 (42%)

Query: 3  SGDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
             Q   +   N  N+++   +         D ++  +G   +AH+ +L+A S YF
Sbjct: 4  GSAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYF 59

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116

 Score = 53.4 bits (129), Expect = 7e-11
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 13 NNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
          ++H   L+   +    +  L DC +       +AH+ +L++ S YF
Sbjct: 3  SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYF 48

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121

 Score = 53.0 bits (128), Expect = 8e-11
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 11/82 (13%)

Query: 13 NNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPET 72
           +H   L+   + +  + TL D  +  + +   AH+ +L+  S  F          +   
Sbjct: 9  PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMF--------EIL--- 57

Query: 73 FSPDLRFYETDGILPFAREDLL 94
          F  + + Y  D + P   + +L
Sbjct: 58 FHRNSQHYTLDFLSPKTFQQIL 79

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145

 Score = 52.5 bits (127), Expect = 2e-10
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 23 FHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFA 59
             L  +S   DC L   G+  QAHK +L+A SP F+
Sbjct: 16 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS 52

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172

 Score = 53.0 bits (128), Expect = 2e-10
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 18 TLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFA 59
           L      L  +S   DC L   G+  QAHK +L+A SP F+
Sbjct: 20 RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS 61

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135

 Score = 52.3 bits (126), Expect = 2e-10
 Identities = 10/46 (21%), Positives = 18/46 (39%)

Query: 13 NNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
          + H   ++   +         D  L   G   +AH  +L+ CS +F
Sbjct: 6  SGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFF 51

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119

 Score = 51.5 bits (124), Expect = 3e-10
 Identities = 10/47 (21%), Positives = 18/47 (38%)

Query: 12 WNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
          +  H   ++   +         D  L   G   +AH  +L+ CS +F
Sbjct: 4  FVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFF 50

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116

 Score = 51.1 bits (123), Expect = 4e-10
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 12/94 (12%)

Query: 1  MESGDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAV 60
          MES  +        +  +L++  +         D  +  E +  +AHK +LSA S YF  
Sbjct: 1  MES-RKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYF-- 57

Query: 61 SLPIPKRGMPETFSPDLRFYETDGILPFAREDLL 94
                  +   FS   +  E   I      ++L
Sbjct: 58 ------HQL---FSVAGQVVELSFIRAEIFAEIL 82

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119

 Score = 50.7 bits (122), Expect = 6e-10
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 14 NHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
           H   ++   +       L DC    +G   +AHK +L+ACS YF
Sbjct: 9  QHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYF 53

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279

 Score = 52.3 bits (126), Expect = 1e-09
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 11 RWNNHQNTLISVFHNLLNSSTLVD---CALSAEGKTIQAHKVLLSACSPYF 58
            ++H + L    +         D   C   A G+  +AH+ +L+A + YF
Sbjct: 11 ECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYF 61

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109

 Score = 47.9 bits (115), Expect = 7e-09
 Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 4/39 (10%)

Query: 25 NLLNSSTLVDCAL----SAEGKTIQAHKVLLSACSPYFA 59
          ++ N+  + D           +T+ AHK +L+  S  F 
Sbjct: 1  SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFY 39

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 49.9 bits (119), Expect = 9e-09
 Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 15  HQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSL----------PI 64
            +  L      L  +S   DC L   G+  QAHK +L+A SP F+              +
Sbjct: 157 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRV 216

Query: 65  PKRGM-PETFSPDLRFYETDGI 85
               + PE F   + F  T   
Sbjct: 217 EINDVEPEVFKEMMCFIYTGKA 238

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119

 Score = 46.5 bits (111), Expect = 3e-08
 Identities = 6/27 (22%), Positives = 12/27 (44%)

Query: 32 LVDCALSAEGKTIQAHKVLLSACSPYF 58
          L D  ++   +   AH ++L+  S   
Sbjct: 30 LCDTLITVGSQEFPAHSLVLAGVSQQL 56

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	94
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	99.94
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	99.93
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.93
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	99.93
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	99.93
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.93
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.93
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.93
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	99.93
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	99.92
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.92
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.91
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.91
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	99.9
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	99.88
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	99.87
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	99.87
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	99.85
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	99.85
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.82
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.12
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	99.04
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	98.51
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	98.39
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	98.37
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	98.36
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	97.75
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	97.52
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	97.47
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	95.28
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	94.2
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	93.79
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	92.06
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	90.49
1nn7_A	105	Potassium channel KV4.2; teteramerization domain,	90.17

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=99.94  E-value=1.7e-26  Score=137.35  Aligned_cols=91  Identities=23%  Similarity=0.313  Sum_probs=84.4

Q ss_pred             CCcceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCC-CCHHHH
Q psy16401          4 GDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPD-LRFYET   82 (94)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~-~~~~~~   82 (94)
                      +.....+.++.|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||+++|.........|.+++ ++++.|
T Consensus         4 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~f   83 (125)
T 3ohu_A            4 GSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGF   83 (125)
T ss_dssp             SCCCEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEECCTTCCHHHH
T ss_pred             CCcceeeecHHHHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEEeCCCCCHHHH
Confidence            4556788999999999999999999999999999999999999999999999999999987666688999998 999999


Q ss_pred             HHhhcccccCCC
Q psy16401         83 DGILPFAREDLL   94 (94)
Q Consensus        83 ~~lL~f~Ytg~l   94 (94)
                      +.+|+|+|||++
T Consensus        84 ~~~l~~iYtg~~   95 (125)
T 3ohu_A           84 GPLLQFAYTAKL   95 (125)
T ss_dssp             HHHHHHHTTSEE
T ss_pred             HHHHHhHcCCce
Confidence            999999999964

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=99.93  E-value=2.1e-26  Score=135.74  Aligned_cols=88  Identities=17%  Similarity=0.176  Sum_probs=81.0

Q ss_pred             CCcceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHH
Q psy16401          4 GDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETD   83 (94)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~   83 (94)
                      +...+.+.+++|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||+++|...   ...|.+++++++.|+
T Consensus         3 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~---~~~i~l~~~~~~~f~   79 (116)
T 3fkc_A            3 SRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA---GQVVELSFIRAEIFA   79 (116)
T ss_dssp             -CCCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC---CSEEEECSSCHHHHH
T ss_pred             cCceeeecCccHHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC---CCEEEeCCCCHHHHH
Confidence            34566678899999999999999999999999999999999999999999999999999654   678999999999999


Q ss_pred             HhhcccccCCC
Q psy16401         84 GILPFAREDLL   94 (94)
Q Consensus        84 ~lL~f~Ytg~l   94 (94)
                      .+|+|+|||++
T Consensus        80 ~~l~~~Ytg~~   90 (116)
T 3fkc_A           80 EILNYIYSSKI   90 (116)
T ss_dssp             HHHHHHTTSCC
T ss_pred             HHHHhhcCCCc
Confidence            99999999975

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.93  E-value=1.7e-26  Score=139.58  Aligned_cols=94  Identities=20%  Similarity=0.341  Sum_probs=84.8

Q ss_pred             CCC-CCcceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcC-CCC
Q psy16401          1 MES-GDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSP-DLR   78 (94)
Q Consensus         1 M~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~-~~~   78 (94)
                      |++ +...+.+.++.|+..+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||+++|.+.......|.++ +++
T Consensus         4 m~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~   83 (138)
T 2z8h_A            4 MSVSESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVT   83 (138)
T ss_dssp             CCCCTTCCCCCCCSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSC
T ss_pred             CCCCCCCeeEecCCchHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCC
Confidence            444 445688899999999999999999999999999999999999999999999999999997755556789995 999


Q ss_pred             HHHHHHhhcccccCCC
Q psy16401         79 FYETDGILPFAREDLL   94 (94)
Q Consensus        79 ~~~~~~lL~f~Ytg~l   94 (94)
                      ++.|+.+|+|+|||++
T Consensus        84 ~~~~~~lL~~~Ytg~~   99 (138)
T 2z8h_A           84 VKGFEPLIQFAYTAKL   99 (138)
T ss_dssp             HHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHhcCCCc
Confidence            9999999999999975

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=99.93  E-value=1.4e-26  Score=137.72  Aligned_cols=90  Identities=21%  Similarity=0.358  Sum_probs=80.7

Q ss_pred             CcceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcC-CCCHHHHH
Q psy16401          5 DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSP-DLRFYETD   83 (94)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~-~~~~~~~~   83 (94)
                      .+.+.++++.|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||+++|.+.......|.++ +++++.|+
T Consensus         2 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~   81 (124)
T 2ihc_A            2 MSVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFE   81 (124)
T ss_dssp             -CEEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---CEEEECCTTSCHHHHH
T ss_pred             CceeeecCcchHHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCCceEeecCCcCHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999997755556789995 99999999


Q ss_pred             HhhcccccCCC
Q psy16401         84 GILPFAREDLL   94 (94)
Q Consensus        84 ~lL~f~Ytg~l   94 (94)
                      .+|+|+|||++
T Consensus        82 ~lL~~iYtg~~   92 (124)
T 2ihc_A           82 PLIQFAYTAKL   92 (124)
T ss_dssp             HHHHHHHHSEE
T ss_pred             HHHHHhcCCCc
Confidence            99999999964

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=99.93  E-value=2.5e-26  Score=135.67  Aligned_cols=86  Identities=19%  Similarity=0.276  Sum_probs=78.4

Q ss_pred             EEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcCCCCHHHHHHhh
Q psy16401          9 CLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSPDLRFYETDGIL   86 (94)
Q Consensus         9 ~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~lL   86 (94)
                      .++|++|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||+++|.+  .+.....|.+++++++.|+.+|
T Consensus         2 ~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll   81 (120)
T 2if5_A            2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALM   81 (120)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHH
T ss_pred             CcCccchHHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999954  4667789999999999999999


Q ss_pred             cccccCCC
Q psy16401         87 PFAREDLL   94 (94)
Q Consensus        87 ~f~Ytg~l   94 (94)
                      +|+|||++
T Consensus        82 ~~~Yt~~~   89 (120)
T 2if5_A           82 DFAYTATL   89 (120)
T ss_dssp             HHHHHSCC
T ss_pred             HHHcCCCC
Confidence            99999975

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.93  E-value=4.8e-26  Score=135.72  Aligned_cols=90  Identities=18%  Similarity=0.269  Sum_probs=80.5

Q ss_pred             CcceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCC-CCCeEEc-CCCCHHHH
Q psy16401          5 DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKR-GMPETFS-PDLRFYET   82 (94)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~-~~~~i~l-~~~~~~~~   82 (94)
                      .....+.+++|+..+++.++++++++.+|||+|.++|+.|+|||.||+++|+||+++|.+... ....|.+ ++++++.|
T Consensus         2 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f   81 (127)
T 1r29_A            2 SADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGF   81 (127)
T ss_dssp             ---CCCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHH
T ss_pred             CCCccccchhHHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHH
Confidence            345667889999999999999999999999999999999999999999999999999965322 6789999 99999999


Q ss_pred             HHhhcccccCCC
Q psy16401         83 DGILPFAREDLL   94 (94)
Q Consensus        83 ~~lL~f~Ytg~l   94 (94)
                      +.+|+|+|||++
T Consensus        82 ~~ll~~~Ytg~~   93 (127)
T 1r29_A           82 NILLDFMYTSRL   93 (127)
T ss_dssp             HHHHHHHHHSCC
T ss_pred             HHHHHHHcCCCc
Confidence            999999999975

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.93  E-value=1.1e-26  Score=137.43  Aligned_cols=83  Identities=17%  Similarity=0.183  Sum_probs=77.6

Q ss_pred             EeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhhccc
Q psy16401         10 LRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFA   89 (94)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL~f~   89 (94)
                      ++|++|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||+++|....  ...|.+++++++.|+.+|+|+
T Consensus         2 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~--~~~i~l~~~~~~~f~~ll~~i   79 (119)
T 3b84_A            2 MSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS--GGSVVLPAGFAEIFGLLLDFF   79 (119)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT--CCCEEECGGGHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC--CCeEEeCCCCHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999997643  678999999999999999999


Q ss_pred             ccCCC
Q psy16401         90 REDLL   94 (94)
Q Consensus        90 Ytg~l   94 (94)
                      |||++
T Consensus        80 Ytg~~   84 (119)
T 3b84_A           80 YTGHL   84 (119)
T ss_dssp             HHSCC
T ss_pred             cCCCC
Confidence            99975

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.93  E-value=7.5e-26  Score=134.03  Aligned_cols=85  Identities=19%  Similarity=0.208  Sum_probs=79.3

Q ss_pred             ceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhh
Q psy16401          7 HFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGIL   86 (94)
Q Consensus         7 ~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL   86 (94)
                      .+.+.+++|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||+++|.+   +..+|.+++++++.|+.+|
T Consensus         3 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~---~~~~i~l~~~~~~~f~~ll   79 (121)
T 1buo_A            3 MIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHR---NSQHYTLDFLSPKTFQQIL   79 (121)
T ss_dssp             CCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTS---CCSEEEECSSCHHHHHHHH
T ss_pred             ceeccCcchHHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcC---CCcEEEeCCCCHHHHHHHH
Confidence            4567889999999999999999999999999999999999999999999999999965   3568999999999999999


Q ss_pred             cccccCCC
Q psy16401         87 PFAREDLL   94 (94)
Q Consensus        87 ~f~Ytg~l   94 (94)
                      +|+|||++
T Consensus        80 ~~~Ytg~~   87 (121)
T 1buo_A           80 EYAYTATL   87 (121)
T ss_dssp             HHHHHSCC
T ss_pred             HhhcCCCc
Confidence            99999975

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=99.93  E-value=6.2e-26  Score=135.69  Aligned_cols=89  Identities=19%  Similarity=0.268  Sum_probs=81.8

Q ss_pred             CCcceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcC-CCCHHHH
Q psy16401          4 GDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSP-DLRFYET   82 (94)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~-~~~~~~~   82 (94)
                      ..+.+.++|++|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||+++|...  ...+|.++ +++++.|
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~--~~~~i~l~~~~~~~~f   82 (129)
T 3ga1_A            5 SAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS--RSAVVELPAAVQPQSF   82 (129)
T ss_dssp             --CEEEEECTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC--CCSEEECCTTCCHHHH
T ss_pred             CCceEEeecCcHHHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC--CCCEEEECCCCCHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999654  67799997 9999999


Q ss_pred             HHhhcccccCCC
Q psy16401         83 DGILPFAREDLL   94 (94)
Q Consensus        83 ~~lL~f~Ytg~l   94 (94)
                      +.+|+|+|||++
T Consensus        83 ~~ll~~iYtg~~   94 (129)
T 3ga1_A           83 QQILSFCYTGRL   94 (129)
T ss_dssp             HHHHHHHHHSEE
T ss_pred             HHHHHHHhCCcc
Confidence            999999999964

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=99.92  E-value=9e-26  Score=137.47  Aligned_cols=90  Identities=20%  Similarity=0.286  Sum_probs=79.2

Q ss_pred             CcceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCC--C--CCCCCeEEcCCCCHH
Q psy16401          5 DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI--P--KRGMPETFSPDLRFY   80 (94)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~--~--~~~~~~i~l~~~~~~   80 (94)
                      -+.+.+.++.|+..+++.++++++++.+|||+|.++|+.|+|||.||+++|+||+++|.+  .  +.....|.+++++++
T Consensus        20 ~~~~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~   99 (144)
T 2ppi_A           20 FQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVM   99 (144)
T ss_dssp             CCCCCCCCTTHHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHH
T ss_pred             eeeeeecCcchHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHH
Confidence            345778889999999999999999999999999999999999999999999999999953  2  356789999999999


Q ss_pred             HHHHhhcccccCCC
Q psy16401         81 ETDGILPFAREDLL   94 (94)
Q Consensus        81 ~~~~lL~f~Ytg~l   94 (94)
                      +|+.+|+|+|||++
T Consensus       100 ~f~~lL~fiYtg~~  113 (144)
T 2ppi_A          100 VMREILDYIFSGQI  113 (144)
T ss_dssp             HHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHhCCCC
Confidence            99999999999975

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.92  E-value=2.7e-25  Score=133.97  Aligned_cols=82  Identities=17%  Similarity=0.151  Sum_probs=72.7

Q ss_pred             eeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhhcccc
Q psy16401         11 RWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFAR   90 (94)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL~f~Y   90 (94)
                      .+++|...+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||+++|....  ...|.+++++++.|+.+|+|+|
T Consensus         4 ~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~--~~~i~l~~~~~~~f~~lL~fiY   81 (135)
T 2yy9_A            4 GSSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT--GGSVVLPAGFAEIFGLLLDFFY   81 (135)
T ss_dssp             ---CHHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC------CCEEECGGGHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC--CCeEEeCCCCHHHHHHHHHHHh
Confidence            46799999999999999999999999999999999999999999999999997643  6789999999999999999999


Q ss_pred             cCCC
Q psy16401         91 EDLL   94 (94)
Q Consensus        91 tg~l   94 (94)
                      ||++
T Consensus        82 tg~~   85 (135)
T 2yy9_A           82 TGHL   85 (135)
T ss_dssp             HSCC
T ss_pred             CCCC
Confidence            9975

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.91  E-value=5.7e-25  Score=129.22  Aligned_cols=80  Identities=19%  Similarity=0.306  Sum_probs=74.2

Q ss_pred             CCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcC--CCCHHHHHHhhcccc
Q psy16401         13 NNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSP--DLRFYETDGILPFAR   90 (94)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~--~~~~~~~~~lL~f~Y   90 (94)
                      ++|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||+++|.+.  ....|.++  +++++.|+.+|+|+|
T Consensus         3 ~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~--~~~~i~l~~~~~~~~~f~~ll~~~Y   80 (116)
T 2vpk_A            3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST--SENNVFLDQSQVKADGFQKLLEFIY   80 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC--CCSCEECCTTTCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC--CCCeEEeecCCCCHHHHHHHHHHHc
Confidence            57899999999999999999999999999999999999999999999999765  46677777  999999999999999


Q ss_pred             cCCC
Q psy16401         91 EDLL   94 (94)
Q Consensus        91 tg~l   94 (94)
                      ||++
T Consensus        81 t~~~   84 (116)
T 2vpk_A           81 TGTL   84 (116)
T ss_dssp             HSCC
T ss_pred             CCCc
Confidence            9975

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.91  E-value=1.3e-25  Score=132.76  Aligned_cols=84  Identities=20%  Similarity=0.305  Sum_probs=76.1

Q ss_pred             eEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhhc
Q psy16401          8 FCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILP   87 (94)
Q Consensus         8 ~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL~   87 (94)
                      ..++++.|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||+++|.+   ....|.+++++++.|+.+|+
T Consensus         3 ~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~---~~~~i~l~~~~~~~f~~ll~   79 (119)
T 2q81_A            3 LGSDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD---QKDVVHLDISNAAGLGQVLE   79 (119)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHH---CCSGGGGGGCCHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcC---CCCEEEeCCCCHHHHHHHHH
Confidence            345668999999999999999999999999999999999999999999999999964   34578889999999999999


Q ss_pred             ccccCCC
Q psy16401         88 FAREDLL   94 (94)
Q Consensus        88 f~Ytg~l   94 (94)
                      |+|||++
T Consensus        80 ~~Ytg~~   86 (119)
T 2q81_A           80 FMYTAKL   86 (119)
T ss_dssp             HHHHSCC
T ss_pred             HHcCCCC
Confidence            9999975

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=99.90  E-value=5.7e-24  Score=139.29  Aligned_cols=90  Identities=18%  Similarity=0.245  Sum_probs=73.1

Q ss_pred             CcceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCC----CCCCCeEEcCCCCHH
Q psy16401          5 DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIP----KRGMPETFSPDLRFY   80 (94)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~----~~~~~~i~l~~~~~~   80 (94)
                      +....+.++.|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||++||.+.    +.....|.++++++.
T Consensus         4 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~   83 (256)
T 3hve_A            4 AEGSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVM   83 (256)
T ss_dssp             ------CCTTTHHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHH
T ss_pred             CCCCccCChHHHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHH
Confidence            3446678899999999999999999999999999999999999999999999999999652    456789999999999


Q ss_pred             HHHHhhcccccCCC
Q psy16401         81 ETDGILPFAREDLL   94 (94)
Q Consensus        81 ~~~~lL~f~Ytg~l   94 (94)
                      +|+.+|+|+|||++
T Consensus        84 ~f~~ll~~~Yt~~~   97 (256)
T 3hve_A           84 VMREILDYIFSGQI   97 (256)
T ss_dssp             HHHHHHHHHHHSCC
T ss_pred             HHHHHHhhccCCCC
Confidence            99999999999975

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=99.88  E-value=2.1e-23  Score=138.10  Aligned_cols=90  Identities=13%  Similarity=0.138  Sum_probs=77.9

Q ss_pred             CcceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeC---CeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcC----
Q psy16401          5 DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAE---GKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSP----   75 (94)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~---~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~----   75 (94)
                      .+...+.++.|+..+++.++++++++.+|||+|.++   |+.|+|||.||+++|+||++||.+  .++....|.++    
T Consensus         5 ~~~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~   84 (279)
T 3i3n_A            5 MEAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSS   84 (279)
T ss_dssp             CCEEEEECTTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSS
T ss_pred             ccccCcCCHhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccc
Confidence            356778899999999999999999999999999998   899999999999999999999965  46677899998    


Q ss_pred             --CCCHHHHHHhhcccccCCC
Q psy16401         76 --DLRFYETDGILPFAREDLL   94 (94)
Q Consensus        76 --~~~~~~~~~lL~f~Ytg~l   94 (94)
                        ++++.+|+.+|+|+|||++
T Consensus        85 ~~~v~~~~f~~ll~~~Ytg~~  105 (279)
T 3i3n_A           85 EPGPEPDTVEAVIEYMYTGRI  105 (279)
T ss_dssp             TTCSCHHHHHHHHHHHHHSEE
T ss_pred             cCCCCHHHHHHHHHhhCcCCc
Confidence              9999999999999999964

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=99.87  E-value=1.3e-22  Score=120.11  Aligned_cols=79  Identities=13%  Similarity=0.124  Sum_probs=69.6

Q ss_pred             ceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhh
Q psy16401          7 HFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGIL   86 (94)
Q Consensus         7 ~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL   86 (94)
                      +.....+.+...+++.++  +.++.+|||++.++|+.|+|||.|||++|+||++       ....|.+++++++.|+.+|
T Consensus         7 p~~~~~~~~~~~~l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~-------~~~~i~l~~v~~~~f~~ll   77 (119)
T 3m5b_A            7 PIRLPSPYGSDRLVQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR-------RGQWALGEGISPSTFAQLL   77 (119)
T ss_dssp             CEEECCTTTTCHHHHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC-------CEEEECCSSCCHHHHHHHH
T ss_pred             CCCCCCCcchHHHHHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc-------CCCEEEeCCCCHHHHHHHH
Confidence            344556778888998887  6789999999999999999999999999999984       3568999999999999999


Q ss_pred             cccccCCC
Q psy16401         87 PFAREDLL   94 (94)
Q Consensus        87 ~f~Ytg~l   94 (94)
                      +|+|||++
T Consensus        78 ~fiYtg~~   85 (119)
T 3m5b_A           78 NFVYGESV   85 (119)
T ss_dssp             HHHTTCCE
T ss_pred             HHHcCCCc
Confidence            99999974

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=99.87  E-value=8.2e-23  Score=126.55  Aligned_cols=83  Identities=22%  Similarity=0.258  Sum_probs=75.8

Q ss_pred             eCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcCCCCHHHHHHhhccc
Q psy16401         12 WNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSPDLRFYETDGILPFA   89 (94)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~lL~f~   89 (94)
                      ++.++..+.+.++++++++.+|||+|.++|+.|+|||.||+++|+||+++|.+  .+.....|.+++++++.|+.+|+|+
T Consensus        14 ~~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~   93 (172)
T 3htm_A           14 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFI   93 (172)
T ss_dssp             SCCCCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHH
Confidence            45566789999999999999999999999999999999999999999999954  5666789999999999999999999


Q ss_pred             ccCCC
Q psy16401         90 REDLL   94 (94)
Q Consensus        90 Ytg~l   94 (94)
                      |||++
T Consensus        94 Yt~~~   98 (172)
T 3htm_A           94 YTGKA   98 (172)
T ss_dssp             HHSCC
T ss_pred             hCCCC
Confidence            99974

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=99.85  E-value=3.2e-22  Score=116.06  Aligned_cols=68  Identities=21%  Similarity=0.238  Sum_probs=60.1

Q ss_pred             HHhCCCcccEEEEeCC----eEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401         26 LLNSSTLVDCALSAEG----KTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSPDLRFYETDGILPFAREDLL   94 (94)
Q Consensus        26 ~~~~~~~~Dv~~~~~~----~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l   94 (94)
                      +++++.+|||++.+++    +.|+|||.||+++|+||+++|.+  .+.. ..|.+++++++.|+.+|+|+|||++
T Consensus         2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~   75 (109)
T 2vkp_A            2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEI   75 (109)
T ss_dssp             CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCC
T ss_pred             cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCc
Confidence            5788999999999988    89999999999999999999965  3444 8999999999999999999999975

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=99.85  E-value=7.5e-23  Score=123.69  Aligned_cols=81  Identities=22%  Similarity=0.272  Sum_probs=73.1

Q ss_pred             CcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcCCCCHHHHHHhhccccc
Q psy16401         14 NHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSPDLRFYETDGILPFARE   91 (94)
Q Consensus        14 ~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~lL~f~Yt   91 (94)
                      -.+..+.+.++++++++.+|||++.++|+.|+|||.||+++|+||+++|.+  .+.....|.+++++++.|+.+|+|+||
T Consensus         7 ~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~   86 (145)
T 4eoz_A            7 VPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYT   86 (145)
T ss_dssp             CCCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhcc
Confidence            345678899999999999999999999999999999999999999999965  344557999999999999999999999


Q ss_pred             CCC
Q psy16401         92 DLL   94 (94)
Q Consensus        92 g~l   94 (94)
                      |++
T Consensus        87 ~~~   89 (145)
T 4eoz_A           87 GKA   89 (145)
T ss_dssp             SCC
T ss_pred             Ccc
Confidence            974

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.82  E-value=3e-20  Score=124.39  Aligned_cols=80  Identities=23%  Similarity=0.284  Sum_probs=71.6

Q ss_pred             cHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcCCCCHHHHHHhhcccccC
Q psy16401         15 HQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSPDLRFYETDGILPFARED   92 (94)
Q Consensus        15 ~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~lL~f~Ytg   92 (94)
                      .+..+.+.+.++++++.++||+|.++|+.|+|||.|||++|+||+++|.+  .+....+|.+++++++.|+.+|+|+|||
T Consensus       157 p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~  236 (312)
T 3hqi_A          157 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTG  236 (312)
T ss_dssp             CCCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHS
T ss_pred             CCchHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCC
Confidence            34568899999999999999999999999999999999999999999965  5677789999999999999999999999


Q ss_pred             CC
Q psy16401         93 LL   94 (94)
Q Consensus        93 ~l   94 (94)
                      ++
T Consensus       237 ~~  238 (312)
T 3hqi_A          237 KA  238 (312)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.12  E-value=7.5e-11  Score=67.12  Aligned_cols=55  Identities=9%  Similarity=0.018  Sum_probs=45.0

Q ss_pred             EEEEe-CCeEEEhhHHHhhccCHHHHhhCCC----CCCCCCeEEcCCCCHHHHHHhhcccc
Q psy16401         35 CALSA-EGKTIQAHKVLLSACSPYFAVSLPI----PKRGMPETFSPDLRFYETDGILPFAR   90 (94)
Q Consensus        35 v~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~----~~~~~~~i~l~~~~~~~~~~lL~f~Y   90 (94)
                      |+++. +|..|.+||.+ |++|++|++||..    .+.....|.++++++..++.+++|+|
T Consensus         4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~   63 (97)
T 4ajy_C            4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT   63 (97)
T ss_dssp             EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHH
Confidence            44554 78899999999 9999999999954    34457899999999999999999999

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=98.51  E-value=5.1e-08  Score=58.79  Aligned_cols=55  Identities=11%  Similarity=0.116  Sum_probs=47.2

Q ss_pred             EEEEe-CCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhhcccccC
Q psy16401         35 CALSA-EGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFARED   92 (94)
Q Consensus        35 v~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL~f~Ytg   92 (94)
                      |++.. +|+.|.+|+.+ |.+|.+++.|+....  ...|.+++++...++.+++|+|..
T Consensus         4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~--~~~Ipl~~V~~~iL~kVieyc~~h   59 (141)
T 1fs1_B            4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG--MDPVPLPNVNAAILKKVIQWCTHH   59 (141)
T ss_dssp             EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC--CSSEECTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC--CCceecCCcCHHHHHHHHHHHHHh
Confidence            56666 78999999998 889999999995422  568999999999999999999864

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=98.39  E-value=8.5e-07  Score=50.44  Aligned_cols=56  Identities=7%  Similarity=0.023  Sum_probs=47.2

Q ss_pred             EEEEe-CCeEEEhhHHHhhccCHHHHhhCCC-CCCCCCeEEcCCCCHHHHHHhhccccc
Q psy16401         35 CALSA-EGKTIQAHKVLLSACSPYFAVSLPI-PKRGMPETFSPDLRFYETDGILPFARE   91 (94)
Q Consensus        35 v~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~-~~~~~~~i~l~~~~~~~~~~lL~f~Yt   91 (94)
                      +++.. +|..|.+++.+ |..|.+++.|+.. .+.....|.+++++...++.+++|+|.
T Consensus         6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~   63 (99)
T 1hv2_A            6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNY   63 (99)
T ss_dssp             EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHH
T ss_pred             EEEEecCCCEEEECHHH-HHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHH
Confidence            56655 88999999997 8899999999943 234457899999999999999999975

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=98.37  E-value=4e-07  Score=51.51  Aligned_cols=56  Identities=9%  Similarity=0.002  Sum_probs=44.7

Q ss_pred             EEEEe-CCeEEEhhHHHhhccCHHHHhhCCC----CCCCCCeEEcCCCCHHHHHHhhccccc
Q psy16401         35 CALSA-EGKTIQAHKVLLSACSPYFAVSLPI----PKRGMPETFSPDLRFYETDGILPFARE   91 (94)
Q Consensus        35 v~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~----~~~~~~~i~l~~~~~~~~~~lL~f~Yt   91 (94)
                      +++.. +|..|.+++.+ |..|.+++.|+..    .+.....|.+++++...++.+++|+|.
T Consensus         3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~   63 (96)
T 2fnj_C            3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTY   63 (96)
T ss_dssp             EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHH
T ss_pred             EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHH
Confidence            45555 88999999997 8899999999943    244457899999999999999999975

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=98.36  E-value=5.3e-08  Score=59.85  Aligned_cols=57  Identities=9%  Similarity=0.105  Sum_probs=27.9

Q ss_pred             EEEEe-CCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhhcccccCC
Q psy16401         35 CALSA-EGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFAREDL   93 (94)
Q Consensus        35 v~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL~f~Ytg~   93 (94)
                      |+|.. +|..|.+|+.+ |.+|++++.|+... .....|.+++++...++.+++|+|...
T Consensus         6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~-~~~~~Ipl~~V~~~iL~kVieyc~~h~   63 (160)
T 2p1m_A            6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDD-CVDNGVPLPNVTSKILAKVIEYCKRHV   63 (160)
T ss_dssp             --CCC---------CHH-HHTCTTTC-------------CCTTSCHHHHHHHHHC-----
T ss_pred             EEEEcCCCCEEEECHHH-HHHhHHHHHHHHcc-CCCCceeCCcCcHHHHHHHHHHHHHcc
Confidence            55654 78999999998 88999999999642 234589999999999999999999763

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=97.75  E-value=6.1e-05  Score=43.65  Aligned_cols=57  Identities=9%  Similarity=-0.014  Sum_probs=44.4

Q ss_pred             cEEEE-eCCeEEEhhHHHhhccCHHHHhhCCC----CCCCCCeEEcCCCCHHHHHHhhccccc
Q psy16401         34 DCALS-AEGKTIQAHKVLLSACSPYFAVSLPI----PKRGMPETFSPDLRFYETDGILPFARE   91 (94)
Q Consensus        34 Dv~~~-~~~~~~~~Hk~vL~a~S~~f~~~f~~----~~~~~~~i~l~~~~~~~~~~lL~f~Yt   91 (94)
                      -|++. .+|..|.+.+.+ |..|..++.|+..    .+.....|.|++++...++.+++|++.
T Consensus        18 ~v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~   79 (112)
T 1vcb_B           18 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTY   79 (112)
T ss_dssp             EEEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHH
Confidence            35665 488899999995 6789999999953    233346899999999999999999964

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=97.52  E-value=0.0002  Score=41.00  Aligned_cols=59  Identities=14%  Similarity=0.071  Sum_probs=46.5

Q ss_pred             EEEEeCCeEEEhhHHHhhccC-HHHHhhCCCC------CCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401         35 CALSAEGKTIQAHKVLLSACS-PYFAVSLPIP------KRGMPETFSPDLRFYETDGILPFAREDLL   94 (94)
Q Consensus        35 v~~~~~~~~~~~Hk~vL~a~S-~~f~~~f~~~------~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l   94 (94)
                      |.|.|||+.|...+..|+... .+|..+|...      .....++-+ +-++..|+.||+|+.+|++
T Consensus         8 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l   73 (107)
T 3drz_A            8 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKL   73 (107)
T ss_dssp             EEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCC
T ss_pred             EEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCee
Confidence            678999999999999998875 5677887542      123345555 6899999999999999975

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=97.47  E-value=0.00013  Score=45.03  Aligned_cols=57  Identities=16%  Similarity=0.151  Sum_probs=44.5

Q ss_pred             cEEEEe-CCeEEEhhHHHhhccCHHHHhhCCCC-C-----CCCCeEEcCCCCHHHHHHhhccccc
Q psy16401         34 DCALSA-EGKTIQAHKVLLSACSPYFAVSLPIP-K-----RGMPETFSPDLRFYETDGILPFARE   91 (94)
Q Consensus        34 Dv~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~~-~-----~~~~~i~l~~~~~~~~~~lL~f~Yt   91 (94)
                      -|+|+. +|..|.+++.+ |..|..++.|+... .     .....|.|++++...++.+++|++.
T Consensus         8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~   71 (169)
T 3v7d_A            8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEH   71 (169)
T ss_dssp             EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHH
Confidence            456655 77899999998 77899999998431 1     2337899999999999999999964

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=95.28  E-value=0.019  Score=33.12  Aligned_cols=59  Identities=15%  Similarity=0.047  Sum_probs=43.3

Q ss_pred             EEEEeCCeEEEhhHHHhhccCH-HHHhhCCCC---CCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401         35 CALSAEGKTIQAHKVLLSACSP-YFAVSLPIP---KRGMPETFSPDLRFYETDGILPFAREDLL   94 (94)
Q Consensus        35 v~~~~~~~~~~~Hk~vL~a~S~-~f~~~f~~~---~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l   94 (94)
                      |+|.|||+.|...+..|...-. .+..++...   .....++-+ +=++..|+.||+|+-+|++
T Consensus         7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l   69 (115)
T 3kvt_A            7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKL   69 (115)
T ss_dssp             EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCB
T ss_pred             EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCC
Confidence            6789999999999999987643 344555331   123455555 5789999999999999875

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=94.20  E-value=0.024  Score=35.94  Aligned_cols=59  Identities=14%  Similarity=0.071  Sum_probs=44.3

Q ss_pred             EEEEeCCeEEEhhHHHhhccC-HHHHhhCCCC------CCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401         35 CALSAEGKTIQAHKVLLSACS-PYFAVSLPIP------KRGMPETFSPDLRFYETDGILPFAREDLL   94 (94)
Q Consensus        35 v~~~~~~~~~~~Hk~vL~a~S-~~f~~~f~~~------~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l   94 (94)
                      |.|.|||+.|...+..|...- .+|..+|...      .....++-+ |-++..|+.||+|+-+|++
T Consensus        14 V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L   79 (202)
T 3drx_A           14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKL   79 (202)
T ss_dssp             EEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCC
T ss_pred             EEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCcc
Confidence            677999999999999998754 4667777432      122345555 5789999999999999875

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2

Probab=93.79  E-value=0.083  Score=30.83  Aligned_cols=57  Identities=21%  Similarity=0.146  Sum_probs=40.7

Q ss_pred             cEEEEeCCeEEEhhHHHhhccCHHHHhhCCC------CCCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401         34 DCALSAEGKTIQAHKVLLSACSPYFAVSLPI------PKRGMPETFSPDLRFYETDGILPFAREDLL   94 (94)
Q Consensus        34 Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~------~~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l   94 (94)
                      =|.|.|||+.|..-+..|...-.   .+++.      ......++-+ +=++..|+.||+|+-+|++
T Consensus        14 ~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l   76 (124)
T 1s1g_A           14 LIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKL   76 (124)
T ss_dssp             EEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCB
T ss_pred             EEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCC
Confidence            36789999999999999976432   23322      1123345555 5699999999999999875

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A

Probab=92.06  E-value=0.14  Score=30.45  Aligned_cols=57  Identities=21%  Similarity=0.169  Sum_probs=41.0

Q ss_pred             cEEEEeCCeEEEhhHHHhhccCHHHHhhCCCC------CCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401         34 DCALSAEGKTIQAHKVLLSACSPYFAVSLPIP------KRGMPETFSPDLRFYETDGILPFAREDLL   94 (94)
Q Consensus        34 Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~------~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l   94 (94)
                      -|+|.|||+.|...+..|...-.   .+++..      .....++-+ |=++..|+.||+|+-+|++
T Consensus        36 ~V~LNVGG~~F~T~~~TL~~~P~---S~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l   98 (140)
T 2nz0_B           36 LIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKL   98 (140)
T ss_dssp             EEEEEETTEEEEEEHHHHHTCTT---STTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSB
T ss_pred             EEEEEECCEEEEeeHHHHhcCCC---eeecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCc
Confidence            47789999999999999976432   233221      123445555 5699999999999999875

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A

Probab=90.49  E-value=0.21  Score=27.95  Aligned_cols=56  Identities=20%  Similarity=0.107  Sum_probs=39.8

Q ss_pred             EEEEeCCeEEEhhHHHhhccCHHHHhhCCC-------CCCCCCeEEcCCCCHHHHHHhhccccc-CCC
Q psy16401         35 CALSAEGKTIQAHKVLLSACSPYFAVSLPI-------PKRGMPETFSPDLRFYETDGILPFARE-DLL   94 (94)
Q Consensus        35 v~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~-------~~~~~~~i~l~~~~~~~~~~lL~f~Yt-g~l   94 (94)
                      |++.|||+.|...+..|+..-   ..+++.       ......++-+ +=++..|+.||+|+-+ |++
T Consensus         3 v~LNVGG~~f~t~~~TL~~~p---~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l   66 (100)
T 1t1d_A            3 VVINVSGLRFETQLKTLNQFP---DTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRL   66 (100)
T ss_dssp             EEEEETTEEEEEEHHHHHTST---TSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCC
T ss_pred             EEEEECCEEEEeeHHHHhcCC---CccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcc
Confidence            678999999999999986542   223322       1123456665 5689999999999998 764

>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2

Probab=90.17  E-value=0.075  Score=30.04  Aligned_cols=56  Identities=21%  Similarity=0.138  Sum_probs=39.8

Q ss_pred             EEEEeCCeEEEhhHHHhhccCHHHHhhCCCC------CCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401         35 CALSAEGKTIQAHKVLLSACSPYFAVSLPIP------KRGMPETFSPDLRFYETDGILPFAREDLL   94 (94)
Q Consensus        35 v~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~------~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l   94 (94)
                      |++.|||+.|...+..|...-.   .+++..      .....++-+ +=++..|+.||+|+-+|++
T Consensus         2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l   63 (105)
T 1nn7_A            2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKL   63 (105)
T ss_dssp             EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCB
T ss_pred             EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCC
Confidence            6789999999999999976432   233221      112345555 5589999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	94
d1r29a_	122	d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB	8e-10
d1buoa_	121	d.42.1.1 (A:) Promyelocytic leukaemia zinc finger	3e-09

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (117), Expect = 8e-10
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 10 LRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
          +++  H + ++   + L +   L D  +    +  +AHK +L ACS  F
Sbjct: 3  IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLF 51

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 3e-09
 Identities = 11/49 (22%), Positives = 23/49 (46%)

Query: 10 LRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
          L+  +H   L+   + +  + TL D  +  + +   AH+ +L+  S  F
Sbjct: 6  LQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMF 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	94
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.94
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.93
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	97.68
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	97.64
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	97.15
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	97.13
d3kvta_	103	akv3.1 voltage-gated potassium channel {California	96.55
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	96.38
d1t1da_	100	Shaker potassium channel {California sea hare (Apl	95.28

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.5e-27  Score=138.38  Aligned_cols=85  Identities=19%  Similarity=0.208  Sum_probs=78.9

Q ss_pred             ceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhh
Q psy16401          7 HFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGIL   86 (94)
Q Consensus         7 ~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL   86 (94)
                      .+.+.+++|+..+++.|+++|.++.+||++|.++|++|+|||+|||++|+||+++|..   +..++.++++++++|+.+|
T Consensus         3 ~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~---~~~~i~~~~v~~~~f~~ll   79 (121)
T d1buoa_           3 MIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHR---NSQHYTLDFLSPKTFQQIL   79 (121)
T ss_dssp             CCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTS---CCSEEEECSSCHHHHHHHH
T ss_pred             eEEEcCCchHHHHHHHHHHHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccC---ccceeecCCCCHHHHHHHH
Confidence            3567789999999999999999999999999999999999999999999999999954   3468999999999999999


Q ss_pred             cccccCCC
Q psy16401         87 PFAREDLL   94 (94)
Q Consensus        87 ~f~Ytg~l   94 (94)
                      +|+|||++
T Consensus        80 ~~~Ytg~i   87 (121)
T d1buoa_          80 EYAYTATL   87 (121)
T ss_dssp             HHHHHSCC
T ss_pred             HheEcccc
Confidence            99999985

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.5e-26  Score=136.09  Aligned_cols=85  Identities=19%  Similarity=0.298  Sum_probs=77.0

Q ss_pred             EeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcCCCCHHHHHHhhc
Q psy16401         10 LRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSPDLRFYETDGILP   87 (94)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~lL~   87 (94)
                      ++|++|+..+++.|+++++++.+||+++.++|+.|+|||+||+++|+||+++|..  .+.....+.+++++++.|+.+|+
T Consensus         3 ~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~   82 (122)
T d1r29a_           3 IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLD   82 (122)
T ss_dssp             CCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHh
Confidence            5689999999999999999999999999999999999999999999999999965  34444556668999999999999


Q ss_pred             ccccCCC
Q psy16401         88 FAREDLL   94 (94)
Q Consensus        88 f~Ytg~l   94 (94)
                      |+|||++
T Consensus        83 ~~Ytg~~   89 (122)
T d1r29a_          83 FMYTSRL   89 (122)
T ss_dssp             HHHHSCC
T ss_pred             hhcCCee
Confidence            9999975

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=4e-05  Score=41.82  Aligned_cols=54  Identities=9%  Similarity=0.019  Sum_probs=40.1

Q ss_pred             EEEe-CCeEEEhhHHHhhccCHHHHhhCCC----CCCCCCeEEcCCCCHHHHHHhhcccc
Q psy16401         36 ALSA-EGKTIQAHKVLLSACSPYFAVSLPI----PKRGMPETFSPDLRFYETDGILPFAR   90 (94)
Q Consensus        36 ~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~----~~~~~~~i~l~~~~~~~~~~lL~f~Y   90 (94)
                      +++. +|..|.+.+.+ |..|..++.++..    .+.....|.+++++...++.+++|++
T Consensus         4 ~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~~~e~~~~~IpL~nV~s~iL~kViey~~   62 (96)
T d2c9wc1           4 KLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT   62 (96)
T ss_dssp             EEECTTCCEEEEEHHH-HTTSHHHHHC------------CEEECTTCCHHHHHHHHHHHH
T ss_pred             EEEcCCCCEEEeeHHH-HHHhHHHHHHHhccCccccCCCCeeECCCCCHHHHHHHHHHHH
Confidence            4443 77889999998 7789999999943    33456789999999999999999984

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.64  E-value=7.6e-05  Score=40.86  Aligned_cols=55  Identities=7%  Similarity=0.040  Sum_probs=44.6

Q ss_pred             EEEEe-CCeEEEhhHHHhhccCHHHHhhCCC-CCCCCCeEEcCCCCHHHHHHhhcccc
Q psy16401         35 CALSA-EGKTIQAHKVLLSACSPYFAVSLPI-PKRGMPETFSPDLRFYETDGILPFAR   90 (94)
Q Consensus        35 v~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~-~~~~~~~i~l~~~~~~~~~~lL~f~Y   90 (94)
                      |++.. +|..|.+.+.+ |..|..++.++.. .......|.+++++...++.+++|++
T Consensus         6 v~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~e~~~~Ipl~~V~s~iL~kViey~~   62 (99)
T d1hv2a_           6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLN   62 (99)
T ss_dssp             EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCEEEeeHHH-HHHhHHHHHHHHccCCCCcCccccCCCChHHHHHHHHHHH
Confidence            45544 77889999998 6689999999843 33456689999999999999999985

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=0.00055  Score=35.20  Aligned_cols=55  Identities=16%  Similarity=0.152  Sum_probs=40.4

Q ss_pred             EEEEe-CCeEEEhhHHHhhccCHHHHhhCCC------CCCCCCeEEcCCCCHHHHHHhhcccc
Q psy16401         35 CALSA-EGKTIQAHKVLLSACSPYFAVSLPI------PKRGMPETFSPDLRFYETDGILPFAR   90 (94)
Q Consensus        35 v~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~------~~~~~~~i~l~~~~~~~~~~lL~f~Y   90 (94)
                      |+|.. +|..|.+-+.+ |..|...+.|+..      .+.....|.+++++...++.+++|++
T Consensus         3 I~L~SsDg~~F~v~~~~-a~~S~tIk~ml~~~~~~~~~~~~~~~Ipl~~V~s~iL~kVieyc~   64 (72)
T d1nexa2           3 VVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAE   64 (72)
T ss_dssp             EEEECTTSCEEEEEHHH-HTTSHHHHHTC-------------CEEECTTCCHHHHHHHHHHHH
T ss_pred             eEEEeCCCCEEEecHHH-HHHHHHHHHHHHhcCccccccCCCCcccCCCcCHHHHHHHHHHHH
Confidence            55655 67789998884 5578999999942      12334579999999999999999985

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00023  Score=35.60  Aligned_cols=53  Identities=13%  Similarity=0.164  Sum_probs=41.6

Q ss_pred             EEEEe-CCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhhcccc
Q psy16401         35 CALSA-EGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFAR   90 (94)
Q Consensus        35 v~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL~f~Y   90 (94)
                      ++|.. +|..|.+-+. .|..|...+.|+..  .....|.+++++...++.+++|++
T Consensus         3 I~L~SsDg~~f~v~~~-~a~~S~tI~~ml~~--~~~~~Ipl~~V~s~iL~kVieyc~   56 (61)
T d1fs1b2           3 IKLQSSDGEIFEVDVE-IAKQSVTIKTMLED--LGMDPVPLPNVNAAILKKVIQWCT   56 (61)
T ss_dssp             EEEECTTSCEEEEEGG-GGGTCHHHHHHHHH--TCCSSEECTTCCHHHHHHHHHHHH
T ss_pred             EEEEecCCCEEEecHH-HHHHhHHHHHHHhc--CCCCCcccCCcCHHHHHHHHHHHH
Confidence            44544 6778988887 55678999999843  234579999999999999999986

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=96.55  E-value=0.00069  Score=37.16  Aligned_cols=59  Identities=15%  Similarity=0.047  Sum_probs=44.1

Q ss_pred             EEEEeCCeEEEhhHHHhhccCH-HHHhhCCCC---CCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401         35 CALSAEGKTIQAHKVLLSACSP-YFAVSLPIP---KRGMPETFSPDLRFYETDGILPFAREDLL   94 (94)
Q Consensus        35 v~~~~~~~~~~~Hk~vL~a~S~-~f~~~f~~~---~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l   94 (94)
                      |+|.|||+.|...+..|..... +|..++...   ......+-+ +=+|..|+.||+|+-+|++
T Consensus         4 I~LNVGG~~F~t~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylR~g~l   66 (103)
T d3kvta_           4 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKL   66 (103)
T ss_dssp             EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCB
T ss_pred             EEEEECCEEEEEeHHHHhhCccchhHHHHcCCCccCCCCCcEEe-cCCHHHHHHHHHHHccCCc
Confidence            6789999999999999987543 555455331   233445555 6899999999999999874

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.38  E-value=0.00035  Score=38.53  Aligned_cols=59  Identities=20%  Similarity=0.088  Sum_probs=42.1

Q ss_pred             EEEEeCCeEEEhhHHHhhccCHHH-HhhCCC--CCCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401         35 CALSAEGKTIQAHKVLLSACSPYF-AVSLPI--PKRGMPETFSPDLRFYETDGILPFAREDLL   94 (94)
Q Consensus        35 v~~~~~~~~~~~Hk~vL~a~S~~f-~~~f~~--~~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l   94 (94)
                      |+|.|||+.|...+..|+.....+ ..++..  ......++-+ +=++..|+.||+|+.+|++
T Consensus         2 I~LNVGG~~f~t~~~TL~~~p~s~l~~~~~~~~~~~~~~~~Fi-DRdp~~F~~IL~ylR~G~l   63 (105)
T d1nn7a_           2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKL   63 (105)
T ss_dssp             EEEEETTEEEEECHHHHHTSCSSSTTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCB
T ss_pred             EEEEECCEEEEEeHHHHhcCCCCCccccccccCcCCCCCcEEE-eCCHHHHHHHHHHHhcCcc
Confidence            678999999999999998754433 222221  2233445555 4689999999999999874

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=95.28  E-value=0.0021  Score=35.01  Aligned_cols=57  Identities=16%  Similarity=0.090  Sum_probs=42.2

Q ss_pred             EEEEeCCeEEEhhHHHhhcc-CHHHHhhCCC---CCCCCCeEEcCCCCHHHHHHhhcccccC
Q psy16401         35 CALSAEGKTIQAHKVLLSAC-SPYFAVSLPI---PKRGMPETFSPDLRFYETDGILPFARED   92 (94)
Q Consensus        35 v~~~~~~~~~~~Hk~vL~a~-S~~f~~~f~~---~~~~~~~i~l~~~~~~~~~~lL~f~Ytg   92 (94)
                      |.|.|||+.|.+.+..|.+. +.++..++..   ......++-+ +=+|..|+.||+|+-+|
T Consensus         3 I~LNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~IL~flR~~   63 (100)
T d1t1da_           3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSG   63 (100)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTT
T ss_pred             EEEEECCEEEEEeHHHHhhCCCchhHHHHhCCCcCCCCCCeEEE-ecCHHHHHHHHHHHhcC
Confidence            67899999999999999874 4455554421   2244456666 55999999999999874