Psyllid ID: psy16421

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKTPFQ
Secondary Structure (PSIPRED)
cccccccccEEEEEEEEEccccccEEEEEEEEEcEEEEEEEEccccccccEEccccccEEEEEccccEEEEEEEEcccccEEEEEEccccccccccccccccccccccEEEEEEccccEEEEEEEEEEccccEEEEEccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccHccccEEEEEEEccccccccHEEccccccccEEEEEEEEEEcccccccccccccEEEEccccEEEEEEEccccccEEEEEEccccEEEEEEccccccEEEcccccEcccccccEEEEEEEEccccccEEEEEccccEEcccccccc
Coil and Loop (DISEMBL)
MTEVSREHMGAYLCiasngvppsvsKRIMLIVQCQYFSKLYiytssmppdildyptssdimvregsnvsmrcaasgspppsimwrreggemitnsfnntvppivkipsqligaheGQQLVLECISEaypksvnywtrekgdmiangktpfq
Flexible Loop (DISEMBL)
mtevsrehMGAYLCIasngvppsVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSmrcaasgspppsIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNywtrekgdmiangktpfq
Low Complexity Region (SEG)
MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKTPFQ
Disordered region (IsUnstruct)
*********GAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDY*****************************W****GEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTRE*************
Disordered Region (DISOPRED)
MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTRE*************
Disordered Region (DISEMBL)
********MGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVS*********PPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKTPFQ
Disordered Region (DISPRO)
MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKTPFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
Q98892	337	Opioid-binding protein/ce	yes	N/A	0.794	0.356	0.279	1e-06
B4HY03	880	Interference hedgehog OS=	N/A	N/A	0.874	0.15	0.261	2e-06
Q9VS29	2074	Down syndrome cell adhesi	no	N/A	0.536	0.039	0.316	4e-06
Q24372	359	Lachesin OS=Drosophila me	no	N/A	0.867	0.364	0.25	8e-06
Q5IS61	345	Opioid-binding protein/ce	no	N/A	0.754	0.330	0.271	1e-05
Q14982	345	Opioid-binding protein/ce	no	N/A	0.754	0.330	0.271	1e-05
P97603	1377	Neogenin (Fragment) OS=Ra	yes	N/A	0.701	0.076	0.251	1e-05
P11834	345	Opioid-binding protein/ce	no	N/A	0.748	0.327	0.266	2e-05
Q90773	353	Protein CEPU-1 OS=Gallus	no	N/A	0.748	0.320	0.262	2e-05
Q99PJ0	344	Neurotrimin OS=Mus muscul	no	N/A	0.807	0.354	0.236	2e-05

>sp|Q98892|OBCAM_CHICK Opioid-binding protein/cell adhesion molecule homolog OS=Gallus gallus GN=OPCML PE=1 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 52/172 (30%)

Query: 10  GAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVS 69
           G Y C       P  S R+ LIVQ             +PP I++   SSDI V EGS+V+
Sbjct: 104 GPYTCSVQTDNHPKTS-RVHLIVQ-------------VPPQIVN--ISSDITVNEGSSVT 147

Query: 70  MRCAASGSPPPSIMWRR-----------------------EGGEMITNSFNN-TVPPIVK 105
           + C A G P P++ WR                        + GE   ++ N+  VP + K
Sbjct: 148 LMCLAFGRPEPTVTWRHLSGKGQGFVSEDEYLEITGITREQSGEYECSAVNDVAVPDVRK 207

Query: 106 IP-----------SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG 146
           +            ++  GA  GQ+ +L+C + A P +   W +E    +ANG
Sbjct: 208 VKVTVNYPPYISNAKNTGASVGQKGILQCEASAVPVAEFQWFKED-TRLANG 258

Inhibits neurite outgrowth.
Gallus gallus (taxid: 9031)

>sp|B4HY03|IHOG_DROSE Interference hedgehog OS=Drosophila sechellia GN=iHog PE=3 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 44/176 (25%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILD-YPTSSD 59
           ++ VS E  G Y C A+N   P+  +RI L    Q        + S  P +L   P+S +
Sbjct: 207 LSNVSSESSGIYSCQATN---PASGERIQLPGSMQLQVTPEQRSQSKSPHLLKGQPSSQE 263

Query: 60  IMVREGSNVSMRCAASGSPPPSIMWR---------------------------REGGEMI 92
           I +REGS++ ++C   GSPPP+++W                             + G  I
Sbjct: 264 ITIREGSSLLLQCPGVGSPPPTVVWSSPDVVGAVKNKRSKVFGHALEISNTRVHDAGTYI 323

Query: 93  TNSFNNTVPPI-------VKIPSQLIG------AHEGQQLVLECISEAYPKSVNYW 135
               N   P +       V+ P Q++        +EG +L LEC +   P    YW
Sbjct: 324 CFQDNGVRPALEHYIKVHVEQPPQIVRPPWADLTNEGDRLKLECEATGVPTPEIYW 379

Mediates response to the active Hedgehog (Hh) protein signal in embryos, functioning upstream or at the level of patched (ptc).

Drosophila sechellia (taxid: 7238)

>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2 OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 17/98 (17%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQ-YFSKLYIYTSSMPPDILDYPTSSD 59
           +  V  +  G YLC A+NG+   + K I L V    YFS                 TS  
Sbjct: 770 LQHVKEDREGFYLCQANNGIGTGIGKVIQLKVNSSPYFSS----------------TSRS 813

Query: 60  IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN 97
           +MV++G    ++CA SG  P +I+W R G   +  S N
Sbjct: 814 VMVKKGDTALLQCAVSGDKPINIVWMRSGKNTLNPSTN 851

Cell adhesion molecule.

Drosophila melanogaster (taxid: 7227)

>sp|Q24372|LACH_DROME Lachesin OS=Drosophila melanogaster GN=Lac PE=2 SV=2

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 66/184 (35%), Gaps = 53/184 (28%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
           + ++     G Y C         VS  + L V+              PP I D  T S +
Sbjct: 100 IKDIQETDAGTYTCQVVISTVHKVSAEVKLSVR-------------RPPVISDNSTQS-V 145

Query: 61  MVREGSNVSMRCAASGSPPPSIMWRREGGEMI-TNS---FNNTV---------------- 100
           +  EGS V M C ASG P P+I WRRE   ++ T+S     NT+                
Sbjct: 146 VASEGSEVQMECYASGYPTPTITWRRENNAILPTDSATYVGNTLRIKSVKKEDRGTYYCV 205

Query: 101 -------------------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGD 141
                               P++ +P   +G      + LEC  EAYP     WT++   
Sbjct: 206 ADNGVSKGDRRNINVEVEFAPVITVPRPRLGQALQYDMDLECHIEAYPPPAIVWTKDDIQ 265

Query: 142 MIAN 145
           +  N
Sbjct: 266 LANN 269

Required for normal tracheal development and maintenance of the trans-epithelial diffusion barrier. Functions as a homophilic cell-adhesion molecule. May play a role in early neuronal differentiation and axon outgrowth.

Drosophila melanogaster (taxid: 7227)

>sp|Q5IS61|OPCM_PANTR Opioid-binding protein/cell adhesion molecule OS=Pan troglodytes GN=OPCML PE=2 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 67/166 (40%), Gaps = 52/166 (31%)

Query: 10  GAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVS 69
           G Y C       P  S R+ LIVQ             +PP I++   SSDI V EGS+V+
Sbjct: 111 GPYTCSVQTDNHPKTS-RVHLIVQ-------------VPPQIMN--ISSDITVNEGSSVT 154

Query: 70  MRCAASGSPPPSIMWR----REG--------------------GEMITNSFNNTVPPIVK 105
           + C A G P P++ WR    +EG                    GE   ++ N+   P V+
Sbjct: 155 LLCLAIGRPEPTVTWRHLSVKEGQGFVSEDEYLEISDIKRDQSGEYECSALNDVAAPDVR 214

Query: 106 I------------PSQLIGAHEGQQLVLECISEAYPKSVNYWTREK 139
                         ++  G   GQ+ +L C + A P +   W +E+
Sbjct: 215 KVKITVNYPPYISKAKNTGVSVGQKGILSCEASAVPMAEFQWFKEE 260

Binds opioids in the presence of acidic lipids; probably involved in cell contact.

Pan troglodytes (taxid: 9598)

>sp|Q14982|OPCM_HUMAN Opioid-binding protein/cell adhesion molecule OS=Homo sapiens GN=OPCML PE=1 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 67/166 (40%), Gaps = 52/166 (31%)

Query: 10  GAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVS 69
           G Y C       P  S R+ LIVQ             +PP I++   SSDI V EGS+V+
Sbjct: 111 GPYTCSVQTDNHPKTS-RVHLIVQ-------------VPPQIMN--ISSDITVNEGSSVT 154

Query: 70  MRCAASGSPPPSIMWR----REG--------------------GEMITNSFNNTVPPIVK 105
           + C A G P P++ WR    +EG                    GE   ++ N+   P V+
Sbjct: 155 LLCLAIGRPEPTVTWRHLSVKEGQGFVSEDEYLEISDIKRDQSGEYECSALNDVAAPDVR 214

Query: 106 I------------PSQLIGAHEGQQLVLECISEAYPKSVNYWTREK 139
                         ++  G   GQ+ +L C + A P +   W +E+
Sbjct: 215 KVKITVNYPPYISKAKNTGVSVGQKGILSCEASAVPMAEFQWFKEE 260

Binds opioids in the presence of acidic lipids; probably involved in cell contact.

Homo sapiens (taxid: 9606)

>sp|P97603|NEO1_RAT Neogenin (Fragment) OS=Rattus norvegicus GN=Neo1 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 21/127 (16%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
           +++V+ +  G Y C+A NG   ++  +  L VQ             +PP+ L  P  ++I
Sbjct: 276 ISDVTEDDAGTYFCVADNGNK-TIEAQAELTVQ-------------VPPEFLKQP--ANI 319

Query: 61  MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPS-QLIGAHEGQQL 119
             RE  ++   C  +G P P++ W + G  +I + +      IVK  + Q++G  +  + 
Sbjct: 320 YARESMDIVFECEVTGKPAPTVKWVKNGDVVIPSDYFK----IVKEHNLQVLGLVKSDEG 375

Query: 120 VLECISE 126
             +CI+E
Sbjct: 376 FYQCIAE 382

May be involved as a regulatory protein in the transition of undifferentiated proliferating cells to their differentiated state. May also function as a cell adhesion molecule in a broad spectrum of embryonic and adult tissues.

Rattus norvegicus (taxid: 10116)

>sp|P11834|OPCM_BOVIN Opioid-binding protein/cell adhesion molecule OS=Bos taurus GN=OPCML PE=1 SV=1

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 66/165 (40%), Gaps = 52/165 (31%)

Query: 10  GAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVS 69
           G Y C       P  S R+ LIVQ             +PP I++   SSD+ V EGS+V+
Sbjct: 111 GPYTCSVQTDNHPKTS-RVHLIVQ-------------VPPQIMN--ISSDVTVNEGSSVT 154

Query: 70  MRCAASGSPPPSIMWR----REG--------------------GEMITNSFNNTVPPIVK 105
           + C A G P P++ WR    +EG                    GE   ++ N+   P V+
Sbjct: 155 LLCLAIGRPEPTVTWRHLSVKEGQGFVSEDEYLEISDIKRDQSGEYECSALNDVAAPDVR 214

Query: 106 I------------PSQLIGAHEGQQLVLECISEAYPKSVNYWTRE 138
                         ++  G   GQ+ +L C + A P +   W +E
Sbjct: 215 KVKITVNYPPYISKAKNTGVSVGQKGILSCEASAVPMAEFQWFKE 259

Binds opioids in the presence of acidic lipids; probably involved in cell contact.

Bos taurus (taxid: 9913)

>sp|Q90773|CEPU1_CHICK Protein CEPU-1 OS=Gallus gallus PE=1 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 51/164 (31%)

Query: 10  GAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVS 69
           G Y C       P  S R+ LIVQ             + P I +  TSSDI + EG NVS
Sbjct: 109 GPYTCSVQTDNHPKTS-RVHLIVQ-------------VSPKITE--TSSDISINEGGNVS 152

Query: 70  MRCAASGSPPPSIMWRR-----------------------EGGEMITNSFNNTVPPIVK- 105
           + C A+G P P+I WR                        + GE   ++ N+   P+V+ 
Sbjct: 153 LTCIATGRPDPTITWRHISPKAVGFISEDEYLEITGITREQSGEYECSASNDVAAPVVQR 212

Query: 106 -----------IPSQLIGAHEGQQLVLECISEAYPKSVNYWTRE 138
                        ++  G   GQ+ +L C + A P +   W ++
Sbjct: 213 VKVTVNYPPYISDAKSTGVPVGQKGILMCEASAVPSADFQWYKD 256

It may be a cellular address molecule specific to Purkinje cells. It may represent a receptor or a subunit of a receptor complex.

Gallus gallus (taxid: 9031)

>sp|Q99PJ0|NTRI_MOUSE Neurotrimin OS=Mus musculus GN=Ntm PE=2 SV=2

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 51/173 (29%)

Query: 10  GAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVS 69
           G Y C       P  S R+ LIVQ             + P I++   SSDI + EG+N+S
Sbjct: 111 GPYTCSVQTDNHPKTS-RVHLIVQ-------------VSPKIVE--ISSDISINEGNNIS 154

Query: 70  MRCAASGSPPPSIMWRR-----------------------EGGEMITNSFNNTVPPIVK- 105
           + C A+G P P++ WR                        + GE   ++ N+   P+V+ 
Sbjct: 155 LTCIATGRPEPTVTWRHISPKAVGFVSEDEYLEIQGITREQSGEYECSASNDVAAPVVRR 214

Query: 106 -----------IPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGK 147
                        ++  G   GQ+  L+C + A P +   W ++   ++   K
Sbjct: 215 VKVTVNYPPYISEAKGTGVPVGQKGTLQCEASAVPSAEFQWFKDDKRLVEGKK 267

Neural cell adhesion molecule.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
322795796	320	hypothetical protein SINV_11975 [Solenop	0.662	0.312	0.57	5e-29
157113484	366	lachesin, putative [Aedes aegypti] gi|10	0.662	0.273	0.468	3e-28
158299290	370	AGAP010221-PA [Anopheles gambiae str. PE	0.662	0.270	0.447	9e-28
332028734	254	Lachesin [Acromyrmex echinatior]	0.662	0.393	0.461	1e-27
322795855	212	hypothetical protein SINV_16511 [Solenop	0.662	0.471	0.496	3e-27
189234395	350	PREDICTED: similar to AGAP010221-PA [Tri	0.662	0.285	0.468	9e-27
328706862	379	PREDICTED: hemicentin-2-like [Acyrthosip	0.728	0.290	0.437	1e-26
270001953	438	hypothetical protein TcasGA2_TC000865 [T	0.662	0.228	0.468	1e-26
242006982	740	predicted protein [Pediculus humanus cor	0.662	0.135	0.447	1e-26
345481544	491	PREDICTED: neurotrimin-like [Nasonia vit	0.668	0.205	0.423	6e-26

>gi|322795796|gb|EFZ18475.1| hypothetical protein SINV_11975 [Solenopsis invicta]

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 77/100 (77%)

Query: 47  MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKI 106
           MPPDILDY TS+D++V EG NV++RCAA+GSP P+I WRRE G+ I       VPP++ +
Sbjct: 84  MPPDILDYDTSTDMVVMEGRNVTLRCAATGSPAPNITWRREDGQQIQLGNGEEVPPMIWV 143

Query: 107 PSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG 146
            +QL+GA EGQ+L LEC SEA+PKS+NYWTR++  ++  G
Sbjct: 144 QNQLVGAQEGQKLTLECYSEAFPKSINYWTRDQDKIVPQG 183

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113484|ref|XP_001657850.1| lachesin, putative [Aedes aegypti] gi|108877711|gb|EAT41936.1| AAEL006478-PA [Aedes aegypti]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/143 (46%), Positives = 87/143 (60%), Gaps = 43/143 (30%)

Query: 47  MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMIT------------- 93
           +PPDILDYPTS+D++VREGSNV++RCAA+GSP P I+WRRE GE I+             
Sbjct: 83  VPPDILDYPTSTDMVVREGSNVTLRCAATGSPEPMILWRRENGENISLHDGQIVQSVEGP 142

Query: 94  -------NSFN---------NTVP--------------PIVKIPSQLIGAHEGQQLVLEC 123
                  N  +         N VP              P++ +P+QL+GA EGQ++ LEC
Sbjct: 143 TLSIPKVNRLHMGAYLCIASNGVPPSVSKRVMLIVHFAPMISVPNQLVGAVEGQRMTLEC 202

Query: 124 ISEAYPKSVNYWTREKGDMIANG 146
            SEAYPKS+NYWTREKGD++  G
Sbjct: 203 HSEAYPKSINYWTREKGDIVPQG 225

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158299290|ref|XP_554132.3| AGAP010221-PA [Anopheles gambiae str. PEST] gi|157014294|gb|EAL39301.3| AGAP010221-PA [Anopheles gambiae str. PEST]

 Score =  128 bits (321), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 84/143 (58%), Gaps = 43/143 (30%)

Query: 47  MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV------ 100
           +PPDILDYPTS+D++VREGSNV++RCAA GSP P+I+WRRE G+ I+      V      
Sbjct: 82  VPPDILDYPTSTDMVVREGSNVTLRCAAVGSPAPAIVWRREAGDNISLQDGEQVSSVEGP 141

Query: 101 -------------------------------------PPIVKIPSQLIGAHEGQQLVLEC 123
                                                PP++ +P+QL+GA EGQ++ LEC
Sbjct: 142 TFTIPKVNRLHMGAYLCIASNGVPPSVSKRVMLIVHFPPMIWVPNQLVGAVEGQRMTLEC 201

Query: 124 ISEAYPKSVNYWTREKGDMIANG 146
            SEAYPKS+NYWTREKGD++  G
Sbjct: 202 HSEAYPKSINYWTREKGDIVPQG 224

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028734|gb|EGI68765.1| Lachesin [Acromyrmex echinatior]

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/143 (46%), Positives = 82/143 (57%), Gaps = 43/143 (30%)

Query: 47  MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVP----- 101
           +PPDILDYPTS+D++VREGSNVS+RC A+GSP P+I WRRE GE+I    N  VP     
Sbjct: 78  VPPDILDYPTSTDMVVREGSNVSLRCEATGSPTPNITWRREDGELINLGNNQEVPSIDGP 137

Query: 102 --------------------------------------PIVKIPSQLIGAHEGQQLVLEC 123
                                                 P++ I +QL+GA EGQQ+ LEC
Sbjct: 138 VFNITKVNRLQMGAYLCIASNGVPPTVSKRIMLVVHFTPMIWIQNQLVGAQEGQQMTLEC 197

Query: 124 ISEAYPKSVNYWTREKGDMIANG 146
            SEA+PKS+NYWTRE   +IANG
Sbjct: 198 HSEAFPKSINYWTRENNVIIANG 220

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795855|gb|EFZ18534.1| hypothetical protein SINV_16511 [Solenopsis invicta]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 85/143 (59%), Gaps = 43/143 (30%)

Query: 47  MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMIT--NS--------- 95
           +PPDILDYPTS+D++VREGSNVS+RC A+GSP P+I WRRE GE+I   NS         
Sbjct: 70  VPPDILDYPTSTDMVVREGSNVSLRCEATGSPTPNITWRREDGELIILGNSQEVPSIDGP 129

Query: 96  -FN-----------------NTVPPIVK--------------IPSQLIGAHEGQQLVLEC 123
            FN                 N VPP V               I +QL+GA EGQQ+ LEC
Sbjct: 130 VFNITKVNRLQMGAYLCIASNGVPPTVSKRIMLVVHFTPMIWIQNQLVGAQEGQQMTLEC 189

Query: 124 ISEAYPKSVNYWTREKGDMIANG 146
            SEA+PKS+NYWTRE   +IANG
Sbjct: 190 HSEAFPKSINYWTRENNVIIANG 212

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234395|ref|XP_974889.2| PREDICTED: similar to AGAP010221-PA [Tribolium castaneum]

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 67/143 (46%), Positives = 86/143 (60%), Gaps = 43/143 (30%)

Query: 47  MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMI------------TN 94
           +PPDILDYPTS+D++VREGSNVS+RCAA+GSP P+I WRREGGE I              
Sbjct: 122 VPPDILDYPTSTDMVVREGSNVSLRCAATGSPEPTIAWRREGGESIPLGNGQEVPSIDGT 181

Query: 95  SFN-----------------NTV--------------PPIVKIPSQLIGAHEGQQLVLEC 123
           +FN                 N V              PP++ I +QL+GA EGQQ+ LEC
Sbjct: 182 TFNISKVNRLHMGPYLCIASNGVPPSVSKRIMLRVHFPPMIWIQNQLVGAMEGQQITLEC 241

Query: 124 ISEAYPKSVNYWTREKGDMIANG 146
            SEAYP+S+NYWT + G++I+ G
Sbjct: 242 HSEAYPRSINYWTMDDGNIISEG 264

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328706862|ref|XP_001942519.2| PREDICTED: hemicentin-2-like [Acyrthosiphon pisum]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 86/153 (56%), Gaps = 43/153 (28%)

Query: 38  SKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN 97
           S+L      +PPDILDYPTS+D+ +REGSNVS+RCAASGSP P+I WR+EG E I    +
Sbjct: 93  SQLGFLDIVVPPDILDYPTSTDMNIREGSNVSLRCAASGSPAPNITWRKEGTENIRLEHS 152

Query: 98  NTV-------------------------------------------PPIVKIPSQLIGAH 114
             V                                           PP++ I +QLIGA 
Sbjct: 153 QQVHSVEGPVLNLTRISRSHMGAYLCIASNGVPPSVSKRIMLVVNFPPMIWIQNQLIGAF 212

Query: 115 EGQQLVLECISEAYPKSVNYWTREKGDMIANGK 147
            GQ L LEC+SEA+PKS+NYWTRE G++IA+G+
Sbjct: 213 IGQSLTLECLSEAHPKSINYWTREAGEIIAHGE 245

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270001953|gb|EEZ98400.1| hypothetical protein TcasGA2_TC000865 [Tribolium castaneum]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/143 (46%), Positives = 86/143 (60%), Gaps = 43/143 (30%)

Query: 47  MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMI------------TN 94
           +PPDILDYPTS+D++VREGSNVS+RCAA+GSP P+I WRREGGE I              
Sbjct: 142 VPPDILDYPTSTDMVVREGSNVSLRCAATGSPEPTIAWRREGGESIPLGNGQEVPSIDGT 201

Query: 95  SFN-----------------NTV--------------PPIVKIPSQLIGAHEGQQLVLEC 123
           +FN                 N V              PP++ I +QL+GA EGQQ+ LEC
Sbjct: 202 TFNISKVNRLHMGPYLCIASNGVPPSVSKRIMLRVHFPPMIWIQNQLVGAMEGQQITLEC 261

Query: 124 ISEAYPKSVNYWTREKGDMIANG 146
            SEAYP+S+NYWT + G++I+ G
Sbjct: 262 HSEAYPRSINYWTMDDGNIISEG 284

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006982|ref|XP_002424321.1| predicted protein [Pediculus humanus corporis] gi|212507721|gb|EEB11583.1| predicted protein [Pediculus humanus corporis]

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 84/143 (58%), Gaps = 43/143 (30%)

Query: 47  MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMI-------TNSFNNT 99
           +PPDILDYPTS+D++ REGSNV+MRCAA G P P I+W+REGGE I        +S + +
Sbjct: 121 VPPDILDYPTSTDMVAREGSNVTMRCAAKGMPEPKIIWKREGGETIPVGQGQEVSSVDGS 180

Query: 100 V------------------------------------PPIVKIPSQLIGAHEGQQLVLEC 123
           V                                    PP++ I +QL+GA EGQ++ LEC
Sbjct: 181 VFNISRVSRLHMGAYLCIAYNGVPPSVSKRITLIVHFPPMIWIQNQLVGAFEGQEVTLEC 240

Query: 124 ISEAYPKSVNYWTREKGDMIANG 146
            SEAYPKS+NYWT ++GD+IA G
Sbjct: 241 HSEAYPKSINYWTGDRGDIIAQG 263

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481544|ref|XP_001606663.2| PREDICTED: neurotrimin-like [Nasonia vitripennis]

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 61/144 (42%), Positives = 85/144 (59%), Gaps = 43/144 (29%)

Query: 47  MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMI-------------- 92
           +PPDILDYPTS+D++VREGSNV+++CAA+G+P P+I WRREG E+I              
Sbjct: 148 VPPDILDYPTSTDMVVREGSNVTLKCAATGTPKPNITWRREGSELIALGNGQEVTSVEGP 207

Query: 93  -------------------TNSFNNTV----------PPIVKIPSQLIGAHEGQQLVLEC 123
                              +N    TV          PP++ I +QL+GA EGQ++ LEC
Sbjct: 208 LLNITRVNRLHMGAYLCIASNGVPPTVSKRIMLIVHFPPMIWIQNQLVGAQEGQEMTLEC 267

Query: 124 ISEAYPKSVNYWTREKGDMIANGK 147
           +SEA+PKS+ YWTR+  + IA G+
Sbjct: 268 LSEAFPKSITYWTRDNDETIAEGE 291

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
FB|FBgn0259714	467	CG42368 [Drosophila melanogast	0.615	0.199	0.388	1.7e-10
UNIPROTKB|B4NZY8	880	iHog "Interference hedgehog" [	0.536	0.092	0.352	3.3e-10
UNIPROTKB|B3N666	879	iHog "Interference hedgehog" [	0.523	0.089	0.356	4.2e-10
UNIPROTKB|B4HY03	880	iHog "Interference hedgehog" [	0.536	0.092	0.352	5.4e-10
ZFIN|ZDB-GENE-040822-27	346	negr1 "neuronal growth regulat	0.298	0.130	0.574	6.6e-10
UNIPROTKB|B4Q599	880	iHog "Interference hedgehog" [	0.536	0.092	0.352	6.8e-10
FB|FBgn0031872	886	ihog "interference hedgehog" [	0.536	0.091	0.352	6.9e-10
FB|FBgn0010238	359	Lac "Lachesin" [Drosophila mel	0.397	0.167	0.409	1.4e-09
FB|FBgn0259245	555	CG42343 [Drosophila melanogast	0.509	0.138	0.391	4.4e-09
FB|FBgn0031837	376	CG11320 [Drosophila melanogast	0.589	0.236	0.371	7.7e-09

FB|FBgn0259714 CG42368 [Drosophila melanogaster (taxid:7227)]

 Score = 156 (60.0 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 42/108 (38%), Positives = 56/108 (51%)

Query:     1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
             +  +SR HMGAYLCIASNGVPPSVSKRI + V    FS + ++   +P  ++  P     
Sbjct:   218 LERISRLHMGAYLCIASNGVPPSVSKRIKVSVD---FSPM-VW---IPHQLVGIPI---- 266

Query:    61 MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPS 108
                 G N+++ C    +P     W RE  +MIT S       I   PS
Sbjct:   267 ----GFNITLECFIEANPTSLNYWTRENDQMITESSKYKTETIPGHPS 310

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|B4NZY8 iHog "Interference hedgehog" [Drosophila yakuba (taxid:7245)]

 Score = 130 (50.8 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
 Identities = 30/85 (35%), Positives = 47/85 (55%)

Query:     1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILD-YPTSSD 59
             ++ VS E  G+Y C A+N   P+  +RI L    Q        + S  P +L+  P S +
Sbjct:   207 LSNVSSESSGSYSCQATN---PASGERIQLTGSLQLQVTPEQRSQSKSPHLLNGQPNSQE 263

Query:    60 IMVREGSNVSMRCAASGSPPPSIMW 84
             I +REGS++ + C   GSPPP+++W
Sbjct:   264 ITIREGSSLLLLCPGVGSPPPTVVW 288

GO:0007224 "smoothened signaling pathway" evidence=ISS

GO:0008201 "heparin binding" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

UNIPROTKB|B3N666 iHog "Interference hedgehog" [Drosophila erecta (taxid:7220)]

 Score = 128 (50.1 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
 Identities = 31/87 (35%), Positives = 51/87 (58%)

Query:     1 MTEVSREHMGAYLCIASNGVPPSVSKRIML--IVQCQYFSKLYIYTSSMPPDILD-YPTS 57
             ++ VS E  G+Y C A+N   P+  +RI L  ++Q Q   +    + S  P +L   P+S
Sbjct:   207 LSNVSSESSGSYSCQATN---PASGERIQLPGLLQLQVTPEQRSLSKS--PHLLKGQPSS 261

Query:    58 SDIMVREGSNVSMRCAASGSPPPSIMW 84
              +I +REGS++ + C   GSPPP+++W
Sbjct:   262 QEITIREGSSLLLLCPGVGSPPPTVVW 288

GO:0007224 "smoothened signaling pathway" evidence=ISS

GO:0008201 "heparin binding" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

UNIPROTKB|B4HY03 iHog "Interference hedgehog" [Drosophila sechellia (taxid:7238)]

 Score = 128 (50.1 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
 Identities = 30/85 (35%), Positives = 47/85 (55%)

Query:     1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILD-YPTSSD 59
             ++ VS E  G Y C A+N   P+  +RI L    Q        + S  P +L   P+S +
Sbjct:   207 LSNVSSESSGIYSCQATN---PASGERIQLPGSMQLQVTPEQRSQSKSPHLLKGQPSSQE 263

Query:    60 IMVREGSNVSMRCAASGSPPPSIMW 84
             I +REGS++ ++C   GSPPP+++W
Sbjct:   264 ITIREGSSLLLQCPGVGSPPPTVVW 288

GO:0007224 "smoothened signaling pathway" evidence=ISS

GO:0008201 "heparin binding" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

ZFIN|ZDB-GENE-040822-27 negr1 "neuronal growth regulator 1" [Danio rerio (taxid:7955)]

 Score = 121 (47.7 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
 Identities = 27/47 (57%), Positives = 29/47 (61%)

Query:    39 KLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWR 85
             KL      +PP I  Y  SSDI V EGSNVS+ CAASG P P I WR
Sbjct:   130 KLIQLIVKVPPKI--YDISSDITVNEGSNVSLICAASGKPEPKISWR 174

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IDA

UNIPROTKB|B4Q599 iHog "Interference hedgehog" [Drosophila simulans (taxid:7240)]

 Score = 127 (49.8 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
 Identities = 30/85 (35%), Positives = 47/85 (55%)

Query:     1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILD-YPTSSD 59
             ++ VS E  G+Y C A+N   P+  +RI L    Q        + S  P +L   P+S +
Sbjct:   207 LSNVSSESSGSYSCQATN---PASGERIQLPGSLQLQVTPEQRSQSKSPHLLKGQPSSQE 263

Query:    60 IMVREGSNVSMRCAASGSPPPSIMW 84
             I +REGS++ + C   GSPPP+++W
Sbjct:   264 ITIREGSSLLLLCPGVGSPPPTVVW 288

GO:0007224 "smoothened signaling pathway" evidence=ISS

GO:0008201 "heparin binding" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

FB|FBgn0031872 ihog "interference hedgehog" [Drosophila melanogaster (taxid:7227)]

 Score = 127 (49.8 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
 Identities = 30/85 (35%), Positives = 47/85 (55%)

Query:     1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDIL-DYPTSSD 59
             ++ VS E  G+Y C A+N   P+  +RI L    Q        + S  P +L   P+S +
Sbjct:   213 LSNVSSESSGSYSCQATN---PASGERIQLPGSLQLQVTPEQRSESKSPHLLRGQPSSQE 269

Query:    60 IMVREGSNVSMRCAASGSPPPSIMW 84
             I +REGS++ + C   GSPPP+++W
Sbjct:   270 ITIREGSSLLLLCPGVGSPPPTVVW 294

GO:0045880 "positive regulation of smoothened signaling pathway" evidence=IMP

GO:0016021 "integral to membrane" evidence=ISS

GO:0008158 "hedgehog receptor activity" evidence=IPI

GO:0007224 "smoothened signaling pathway" evidence=IDA;IMP

GO:0035222 "wing disc pattern formation" evidence=IGI;IMP

GO:0035017 "cuticle pattern formation" evidence=IGI;IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0008201 "heparin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009986 "cell surface" evidence=IDA

GO:0097108 "hedgehog family protein binding" evidence=IPI

GO:0008589 "regulation of smoothened signaling pathway" evidence=IGI;IMP

GO:0001751 "compound eye photoreceptor cell differentiation" evidence=IGI

GO:0048749 "compound eye development" evidence=IGI

FB|FBgn0010238 Lac "Lachesin" [Drosophila melanogaster (taxid:7227)]

 Score = 109 (43.4 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 25/61 (40%), Positives = 32/61 (52%)

Query:    48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIP 107
             PP I D  T S ++  EGS V M C ASG P P+I WRRE   ++       V   ++I 
Sbjct:   134 PPVISDNSTQS-VVASEGSEVQMECYASGYPTPTITWRRENNAILPTDSATYVGNTLRIK 192

Query:   108 S 108
             S
Sbjct:   193 S 193

GO:0007409 "axonogenesis" evidence=ISS

GO:0019898 "extrinsic to membrane" evidence=NAS

GO:0007424 "open tracheal system development" evidence=IEP;IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0035160 "maintenance of epithelial integrity, open tracheal system" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0005918 "septate junction" evidence=IDA

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP

GO:0019991 "septate junction assembly" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

FB|FBgn0259245 CG42343 [Drosophila melanogaster (taxid:7227)]

 Score = 144 (55.7 bits), Expect = 4.4e-09, P = 4.4e-09
 Identities = 36/92 (39%), Positives = 52/92 (56%)

Query:     1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
             +++++R  MGAY+CIASNGVPP+VSKR+ L V   +F  L      +P  ++  P  +D 
Sbjct:   276 LSKITRSEMGAYMCIASNGVPPTVSKRMKLQV---HFHPLV----QVPNQLVGAPVLTD- 327

Query:    61 MVREGSNVSMRCAASGSPPPSIMWRREGGEMI 92
                    V++ C    SP     W+RE GEMI
Sbjct:   328 -------VTLICNVEASPKAINYWQRENGEMI 352

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0031837 CG11320 [Drosophila melanogaster (taxid:7227)]

 Score = 139 (54.0 bits), Expect = 7.7e-09, P = 7.7e-09
 Identities = 39/105 (37%), Positives = 55/105 (52%)

Query:     3 EVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMV 62
             +V R HMGAYLCIASNGVPP+VSKR+ML+V    F+   I+T         Y T   I V
Sbjct:   198 QVQRSHMGAYLCIASNGVPPTVSKRVMLVVN---FAPT-IWTR--------YDT---IYV 242

Query:    63 REGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN-TVPPIVKI 106
               G  +++ C     P     W R+   +   S+ + +V  + +I
Sbjct:   243 GLGQKLTLECITESQPASVNFWLRDSQLLQGGSYESVSVDHVFRI 287

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	151
smart00410	85	smart00410, IG_like, Immunoglobulin like	6e-08
smart00409	85	smart00409, IG, Immunoglobulin	6e-08
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	3e-06
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	3e-06
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	4e-06
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	6e-06
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	9e-06
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	1e-05
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	1e-04
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	2e-04
pfam00047	62	pfam00047, ig, Immunoglobulin domain	2e-04
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	3e-04
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	4e-04
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	0.001
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	0.002
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	0.003
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	0.003
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	0.004

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 47.1 bits (112), Expect = 6e-08
 Identities = 16/39 (41%), Positives = 27/39 (69%)

Query: 57 SSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
             + V+EG +V++ C ASGSPPP + W ++GG+++  S
Sbjct: 1  PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAES 39

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 47.1 bits (112), Expect = 6e-08
 Identities = 16/39 (41%), Positives = 27/39 (69%)

Query: 57 SSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
             + V+EG +V++ C ASGSPPP + W ++GG+++  S
Sbjct: 1  PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAES 39

Length = 85

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 42.4 bits (100), Expect = 3e-06
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 64 EGSNVSMRCAASGSPPPSIMWRREGGEM 91
          EG +V++ C A G+P P+I W ++G  +
Sbjct: 1  EGQSVTLTCPAEGNPVPNITWLKDGKPL 28

Length = 63

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 9/77 (11%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIP 107
           PP I+++P  SD++V +G   ++ C A G P P+I W + G  + T+  +     IV +P
Sbjct: 1   PPRIVEHP--SDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIV-LP 57

Query: 108 S------QLIGAHEGQQ 118
           S      +++   +G+ 
Sbjct: 58  SGSLFFLRVVHGRKGRS 74

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 42.2 bits (100), Expect = 4e-06
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           D+ V+EG +    C  +G P P++ W +  G+ + +S
Sbjct: 8  KDVEVQEGESARFTCTVTGDPDPTVSWFK-DGQPLRSS 44

Length = 90

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 41.2 bits (97), Expect = 6e-06
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 68 VSMRCAASGSPPPSIMWRREGGEM 91
          V  +C   G P P+++WR+E GE+
Sbjct: 1  VEFQCEVGGDPVPTVLWRKEDGEL 24

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 41.3 bits (97), Expect = 9e-06
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 56  TSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIV 104
           T S  +V EG +V++ C+A G+PPP+  W ++G   +++S N    P V
Sbjct: 5   TPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVP-LSSSQNGFFTPNV 52

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIP 107
           P  I+ +P   D    +G NV++ C A G+P P I WR+  G M +++  +    ++KIP
Sbjct: 1   PSIIVVFP--KDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIP 58

Query: 108 S 108
           +
Sbjct: 59  N 59

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 11/26 (42%), Positives = 19/26 (73%)

Query: 65 GSNVSMRCAASGSPPPSIMWRREGGE 90
          G  V+ +C A+G+P P+I W++EG +
Sbjct: 1  GRTVTFQCEATGNPQPAIFWQKEGSQ 26

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEM 91
            V  GS V ++C ASG+P P+I W ++G   
Sbjct: 4  HAVPAGSTVRLKCPASGNPRPTITWLKDGKPF 35

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 65  GSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKI 106
           GS+V++ C+ SG P   + W +EG  +  ++   T    V  
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSS 42

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 5/43 (11%)

Query: 49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEM 91
          PD   +P  SD    EG  VS+ C A GSPPP+  W   G E+
Sbjct: 8  PDDTIFPEESD----EG-KVSLNCRARGSPPPTYRWLMNGTEI 45

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREG 88
          SDI+   G  V + C+A G PPP I W+++G
Sbjct: 7  SDIVAVRGGPVVLNCSAEGEPPPKIEWKKDG 37

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITN 94
          ++P  IL  P S  + V EG +    C   G P P++ W REG  ++++
Sbjct: 1  TLPATILTKPRS--LTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSS 47

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 64 EGSNVSMRCAASGSPPPSIMWRREGGEM 91
          EG  V   C A G P P I W + G ++
Sbjct: 1  EGQTVDFLCEAQGYPQPVIAWTKGGSQL 28

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 34.8 bits (80), Expect = 0.003
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
             +D P +   +V EG   ++RC A GSP P + W   G  +I   
Sbjct: 1  TIPVDGPNA--TVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTR 45

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
          PD   +PT SD        V + C A G+P P+  W R G E+ T S
Sbjct: 8  PDDAIFPTDSD-----EKKVILNCEARGNPVPTYRWLRNGTEIDTES 49

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 34.0 bits (78), Expect = 0.004
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 65  GSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPP 102
           G   ++RC A G P P+I W    G++I+NS    V  
Sbjct: 1   GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYD 38

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
KOG3513|consensus	1051		99.8
KOG4221|consensus	1381		99.8
KOG4194|consensus	873		99.79
KOG3513|consensus	1051		99.73
KOG4222|consensus	1281		99.69
PHA02785	326	IL-beta-binding protein; Provisional	99.63
KOG4221|consensus	1381		99.58
KOG4222|consensus	1281		99.44
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.3
PHA02826	227	IL-1 receptor-like protein; Provisional	99.28
KOG4194|consensus	873		99.25
PHA02785	326	IL-beta-binding protein; Provisional	99.14
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	98.91
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.83
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.81
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.8
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	98.79
PHA02826	227	IL-1 receptor-like protein; Provisional	98.79
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.72
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.68
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.67
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.65
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.64
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.64
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.62
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.61
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	98.6
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.59
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.57
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	98.57
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	98.55
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.55
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.53
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.52
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	98.52
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.49
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.47
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.47
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	98.46
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.46
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.44
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.44
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	98.43
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	98.42
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	98.42
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.42
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.42
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.42
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.41
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.41
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.4
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.4
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.4
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.38
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	98.37
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.36
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	98.36
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.36
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.36
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.33
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.33
PHA03376	221	BARF1; Provisional	98.33
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.32
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.32
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.31
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.31
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	98.31
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.3
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.3
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.3
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.3
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.3
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.3
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.3
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	98.3
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.29
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.29
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	98.29
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.29
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.28
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.27
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.27
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.27
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.26
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.25
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.25
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	98.25
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	98.24
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.24
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.23
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	98.23
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.23
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.22
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	98.22
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	98.22
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.22
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.21
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.2
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.19
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.19
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.18
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.18
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.18
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.17
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.17
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.16
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.16
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.15
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.15
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.14
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.13
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	98.13
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.13
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	98.12
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.12
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	98.12
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.12
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.11
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.11
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.1
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.1
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.09
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	98.08
KOG3515|consensus	741		98.08
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.07
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.07
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.06
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.05
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.05
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.05
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.05
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.04
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.03
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.03
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.02
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.02
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.02
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.02
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.01
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.0
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	97.99
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	97.99
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	97.98
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	97.98
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	97.95
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	97.95
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	97.94
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	97.93
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	97.93
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	97.9
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	97.9
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	97.88
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	97.88
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	97.88
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.88
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	97.87
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	97.86
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	97.86
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	97.85
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	97.85
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	97.83
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	97.83
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	97.83
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	97.82
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	97.82
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	97.81
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	97.8
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	97.79
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	97.79
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	97.79
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	97.78
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	97.78
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	97.77
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	97.77
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	97.76
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	97.76
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	97.75
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	97.7
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	97.69
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.68
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	97.66
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	97.66
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	97.65
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	97.64
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	97.64
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	97.63
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	97.61
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	97.61
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	97.6
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	97.58
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	97.57
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	97.57
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	97.56
smart00408	63	IGc2 Immunoglobulin C-2 Type.	97.56
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	97.53
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	97.52
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	97.52
KOG3515|consensus	741		97.51
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	97.5
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	97.47
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	97.46
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.46
PHA02633	63	hypothetical protein; Provisional	97.45
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	97.45
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.45
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.43
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	97.36
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	97.29
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	97.29
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	97.29
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	97.28
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.27
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	97.27
smart00408	63	IGc2 Immunoglobulin C-2 Type.	97.26
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.24
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.23
PF00047	64	ig: Immunoglobulin domain The Prosite family only	97.22
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	97.19
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	97.15
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	97.14
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.13
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.11
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.11
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	97.09
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.09
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	97.06
smart00409	86	IG Immunoglobulin.	97.05
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	97.05
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.04
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	97.04
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.04
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	97.02
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.01
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	96.96
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	96.93
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	96.9
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.89
PHA03273	486	envelope glycoprotein C; Provisional	96.88
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	96.88
smart00409	86	IG Immunoglobulin.	96.86
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	96.86
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	96.85
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	96.85
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	96.82
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	96.81
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	96.81
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	96.78
cd05770	93	IgC_beta2m Class I major histocompatibility comple	96.74
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	96.73
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	96.71
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	96.7
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	96.63
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.62
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	96.6
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	96.55
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	96.52
smart00407	75	IGc1 Immunoglobulin C-Type.	96.52
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	96.51
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	96.48
PHA03270	466	envelope glycoprotein C; Provisional	96.44
PHA03271	490	envelope glycoprotein C; Provisional	96.41
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	96.41
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	96.39
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	96.38
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	96.34
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	96.23
PHA03269	566	envelope glycoprotein C; Provisional	96.21
PF00047	64	ig: Immunoglobulin domain The Prosite family only	96.19
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	96.19
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	96.16
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	96.13
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	95.99
PHA02987	189	Ig domain OX-2-like protein; Provisional	95.99
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	95.81
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	95.76
PHA03376	221	BARF1; Provisional	95.58
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	95.57
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	95.52
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	95.52
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	95.5
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	95.49
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	95.47
cd05770	93	IgC_beta2m Class I major histocompatibility comple	95.44
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	95.31
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	95.31
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	95.23
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	95.2
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	94.92
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	94.88
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	94.84
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	94.82
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	94.66
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	94.59
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	94.53
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	94.51
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	94.5
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	94.39
smart00407	75	IGc1 Immunoglobulin C-Type.	94.34
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	94.16
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	94.05
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	93.96
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	93.88
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	93.8
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	93.66
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	93.56
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	93.48
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	93.43
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	93.32
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	93.26
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	93.18
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	92.97
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	92.76
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	92.67
PHA02987	189	Ig domain OX-2-like protein; Provisional	92.39
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	92.34
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	92.08
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	91.68
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	91.57
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	91.53
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	91.41
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	91.31
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	91.29
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	91.1
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	91.01
PHA03052	69	Hypothetical protein; Provisional	90.98
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	90.95
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	90.61
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	90.51
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	89.81
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	89.21
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	88.96
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	88.94
PHA02865	338	MHC-like TNF binding protein; Provisional	88.93
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	88.92
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	88.78
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	88.65
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	88.49
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	88.21
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	88.2
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	87.11
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	86.21
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	86.01
PHA02914	500	Immunoglobulin-like domain protein; Provisional	85.75
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	85.61
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	84.73
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	84.64
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	84.42
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	84.41
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	84.37
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	84.08
KOG1480|consensus	909		83.63
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	83.01
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	82.89
PHA03271	490	envelope glycoprotein C; Provisional	82.08
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	81.74
smart00406	81	IGv Immunoglobulin V-Type.	81.71
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	81.69
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	81.04
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	80.14

>KOG3513|consensus

Probab=99.80  E-value=5.5e-19  Score=135.67  Aligned_cols=123  Identities=29%  Similarity=0.515  Sum_probs=102.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|.|.|.|..| ...+.+.|+|.             .+|.++..+  ++..+..|+.+.+.|.+.|.|.|
T Consensus       298 I~nv~~~D~G~Y~C~AeN~~G-~~~~~~~v~v~-------------a~P~w~~~~--~d~~~~~gs~v~~eC~a~g~P~p  361 (1051)
T KOG3513|consen  298 IPNVQYEDAGEYECIAENSRG-SATHSGHVTVY-------------APPYWLQKP--QDTEADTGSNVTLECKASGKPNP  361 (1051)
T ss_pred             ecccCcCCCeEEEEEEecccc-cceeeEEEEEe-------------cCchhhccc--ceeEecCCCCeEEEEEecCCCCC
Confidence            678999999999999999999 77777887775             789988877  67888899999999999999999


Q ss_pred             eEEEEeCCeeeEecccC-------------------------------------------CCCCCeeeeCC--ceeEeec
Q psy16421         81 SIMWRREGGEMITNSFN-------------------------------------------NTVPPIVKIPS--QLIGAHE  115 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~-------------------------------------------~~~~p~~~~~~--~~~~~~~  115 (151)
                      .+.|++ ++.++....+                                           ...+|.|...+  ....+..
T Consensus       362 ~v~Wlk-Ng~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~  440 (1051)
T KOG3513|consen  362 TVKWLK-NGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVV  440 (1051)
T ss_pred             ceEEee-CCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEe
Confidence            999999 6777663332                                           12346666554  3346788


Q ss_pred             CCcEEEEeeecccCCCeeEEEcCCc
Q psy16421        116 GQQLVLECISEAYPKSVNYWTREKG  140 (151)
Q Consensus       116 g~~~~l~C~~~g~p~~~~~W~k~~~  140 (151)
                      |.++.+.|...+.|.|.+.|.|+++
T Consensus       441 g~~v~i~C~~~asP~p~~~W~k~~~  465 (1051)
T KOG3513|consen  441 GGTVTIDCKPFASPKPKVSWLKGGE  465 (1051)
T ss_pred             CCeEEEeeccCCCCcceEEEEcCCc
Confidence            9999999999999999999999877

>KOG4221|consensus

Probab=99.80  E-value=7.7e-19  Score=135.32  Aligned_cols=138  Identities=26%  Similarity=0.451  Sum_probs=112.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.++++.|.|.|+|.+.++.....+..+.|+|...       ..+...-.|...+  ....+.+|+.+.|.|.+.|.|.|
T Consensus       197 I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~-------~~~~~~~~fl~~p--~~~~v~~g~~v~leCvvs~~p~p  267 (1381)
T KOG4221|consen  197 ISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSD-------PGALNKLVFLDEP--SNAVVVEGDDVVLECVVSGVPKP  267 (1381)
T ss_pred             ecccccCCCceEEEEEecCCcCCccceeEEEecCC-------cccccceeeecCC--CccccccCCcEEEEEEecCCCCC
Confidence            67899999999999999987767788888887521       1122333455555  56788899999999999999999


Q ss_pred             eEEEEeCCeeeEecccC-----------------------------------------CCCCCeeeeCCceeEeecCCcE
Q psy16421         81 SIMWRREGGEMITNSFN-----------------------------------------NTVPPIVKIPSQLIGAHEGQQL  119 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~-----------------------------------------~~~~p~~~~~~~~~~~~~g~~~  119 (151)
                      .+.|++ |+..+.....                                         +..+|.|...+....+.++.++
T Consensus       268 ~v~Wlr-ng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~di  346 (1381)
T KOG4221|consen  268 SVKWLR-NGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDI  346 (1381)
T ss_pred             ceEEee-CCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccce
Confidence            999999 6766654422                                         4678899999999999999999


Q ss_pred             EEEeeecccCCCeeEEEcCCceeccCCCC
Q psy16421        120 VLECISEAYPKSVNYWTREKGDMIANGKT  148 (151)
Q Consensus       120 ~l~C~~~g~p~~~~~W~k~~~~~~~~~~~  148 (151)
                      +|.|.+.|+|.|.+.|+|||..+.+++.+
T Consensus       347 e~ec~~~g~p~p~v~w~kNgd~~ipsdy~  375 (1381)
T KOG4221|consen  347 EFECPVSGKPIPTVRWYKNGDRIIPSDYF  375 (1381)
T ss_pred             eEeCCCCCCCcceEEEEecCcccCcccce
Confidence            99999999999999999999888876544

>KOG4194|consensus

Probab=99.79  E-value=5.2e-19  Score=128.88  Aligned_cols=131  Identities=27%  Similarity=0.536  Sum_probs=108.4

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      +.+|+-.|+|.|+|+++|-+|..-++.++|+|.             .-|.|+..|  .++++..|+.+.|.|.+.|.|.|
T Consensus       578 L~nVt~td~grYQCVvtN~FGStysqk~KltV~-------------~~PsFtktP--~dltl~tg~mArl~CaAtG~P~P  642 (873)
T KOG4194|consen  578 LDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVN-------------QAPSFTKTP--EDLTLRTGQMARLECAATGHPRP  642 (873)
T ss_pred             eeeeecccCceEEEEEecccCcchhheeEEEee-------------ccCccccCc--ccceeecccceeeeeeccCCCCc
Confidence            368899999999999999999877888887764             789999988  68999999999999999999999


Q ss_pred             eEEEEeCCeeeEecccC-------------------------------------------CCCCCeeeeCCceeEeecCC
Q psy16421         81 SIMWRREGGEMITNSFN-------------------------------------------NTVPPIVKIPSQLIGAHEGQ  117 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~-------------------------------------------~~~~p~~~~~~~~~~~~~g~  117 (151)
                      ++.|.|.+|.-......                                           +...|.+.++.....+..|+
T Consensus       643 eIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~ge  722 (873)
T KOG4194|consen  643 EIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGE  722 (873)
T ss_pred             ceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecc
Confidence            99999966553332221                                           23456677777788899999


Q ss_pred             cEEEEeeecccCC-CeeEEEcCCceeccCC
Q psy16421        118 QLVLECISEAYPK-SVNYWTREKGDMIANG  146 (151)
Q Consensus       118 ~~~l~C~~~g~p~-~~~~W~k~~~~~~~~~  146 (151)
                      ++.|.|.+.|.|. |.+.|+|+++++.-..
T Consensus       723 t~vlqC~a~~~~a~pr~~W~k~d~pil~t~  752 (873)
T KOG4194|consen  723 TLVLQCLAEGAPADPRLEWFKEDKPILITE  752 (873)
T ss_pred             eEEEEEecCCCCCCccccccCCCCceEEee
Confidence            9999999999888 9999999888775433

>KOG3513|consensus

Probab=99.73  E-value=3.6e-17  Score=125.89  Aligned_cols=130  Identities=22%  Similarity=0.391  Sum_probs=105.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |++++.+|+|+|.|.|.|..| .....+.|.|.            ...|.|...+..+...+..|..+.+.|...+.|.|
T Consensus       390 is~v~~~dsg~YQC~A~Nk~G-~i~anA~L~V~------------a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p  456 (1051)
T KOG3513|consen  390 ISNVQESDSGVYQCIAENKYG-TIYANAELKVL------------ASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKP  456 (1051)
T ss_pred             EEecccccCeEEEeeeecccc-eEeeeeEEEEE------------ccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcc
Confidence            578999999999999999999 67788888875            25688877775455677789999999999999999


Q ss_pred             eEEEEeCCeeeEecccC----------------------------------------CCCCCeeeeCCceeEeecCCcEE
Q psy16421         81 SIMWRREGGEMITNSFN----------------------------------------NTVPPIVKIPSQLIGAHEGQQLV  120 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~----------------------------------------~~~~p~~~~~~~~~~~~~g~~~~  120 (151)
                      .+.|.+ +++.+....+                                        +.-++.|...++...+..|+.+.
T Consensus       457 ~~~W~k-~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~  535 (1051)
T KOG3513|consen  457 KVSWLK-GGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVT  535 (1051)
T ss_pred             eEEEEc-CCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEE
Confidence            999999 5554443332                                        23467788888999999999999


Q ss_pred             EEeeecccCCC--eeEEEcCCceecc
Q psy16421        121 LECISEAYPKS--VNYWTREKGDMIA  144 (151)
Q Consensus       121 l~C~~~g~p~~--~~~W~k~~~~~~~  144 (151)
                      |+|++...|..  .|.|.+||..+..
T Consensus       536 l~Ce~shD~~ld~~f~W~~nG~~id~  561 (1051)
T KOG3513|consen  536 LTCEASHDPSLDITFTWKKNGRPIDF  561 (1051)
T ss_pred             EEeecccCCCcceEEEEEECCEEhhc
Confidence            99999977765  4999999876543

>KOG4222|consensus

Probab=99.69  E-value=6.4e-17  Score=124.33  Aligned_cols=128  Identities=22%  Similarity=0.433  Sum_probs=107.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.++...|+|.|.|++.|..|...+...+|.|             .++|.|...+  ..+.+..|..+.|.|.+.|.|.|
T Consensus       191 IsnvrksD~GtY~CVatNmvG~ReS~~A~lsv-------------~e~P~f~~rp--~~~~v~~g~~~~f~c~v~GdP~P  255 (1281)
T KOG4222|consen  191 ISNVRKSDEGTYACVATNMVGERESIPARLSV-------------QEKPWFWKRP--KDLAVLVGAAAEFDCRVGGDPQP  255 (1281)
T ss_pred             EeccccCCCceeeeeecccccccccccceeee-------------ccCCcccccc--ccceeecccccccccccCCCCCC
Confidence            67899999999999999999988888888666             4889998877  67889999999999999999999


Q ss_pred             eEEEEeCCeeeEecccC----------------------------------------CCCCCeeeeCCceeEeecCCcEE
Q psy16421         81 SIMWRREGGEMITNSFN----------------------------------------NTVPPIVKIPSQLIGAHEGQQLV  120 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~----------------------------------------~~~~p~~~~~~~~~~~~~g~~~~  120 (151)
                      .+.|.+. +..+.....                                        +..+|.|...+....+..|..+.
T Consensus       256 ~Vrwkk~-~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt  334 (1281)
T KOG4222|consen  256 TVRWKKD-DPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVT  334 (1281)
T ss_pred             ceeeecc-CCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEE
Confidence            9999883 333221110                                        46788888888888899999999


Q ss_pred             EEeeecccCCCeeEEEcCCceecc
Q psy16421        121 LECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       121 l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      |.|.+.|.|+|.+.|.|.|...+.
T Consensus       335 ~pc~~~gnP~PavfW~keg~q~ll  358 (1281)
T KOG4222|consen  335 FPCETLGNPPPAVFWLKEGSQDLL  358 (1281)
T ss_pred             eeeecCCCCCcceEEeccCcceec
Confidence            999999999999999998765443

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.63  E-value=1e-14  Score=102.90  Aligned_cols=127  Identities=17%  Similarity=0.283  Sum_probs=83.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEee-----ec
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCA-----AS   75 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~-----~~   75 (151)
                      |.++..+|+|.|+|.+.|..+ .....+.|+|...           .++.+...+  ....+.+|..+.|.|.     ..
T Consensus        86 i~~~~~~DsG~Y~C~a~N~~g-~~~~s~~L~V~~~-----------~~~~~~~~~--~~~~~~~g~~~~i~C~~~~~~~~  151 (326)
T PHA02785         86 ILNPTQSDSGIYICITKNETY-CDMMSLNLTIVSV-----------SESNIDLIS--YPQIVNERSTGEMVCPNINAFIA  151 (326)
T ss_pred             EcccCcccCeEEEEEEECCCc-ceEEEEEEEEEec-----------CCCccceee--ccceecccCcEEEECCChhhccc
Confidence            356788999999999999987 4556667766421           222222222  3345668999999997     24


Q ss_pred             CCCCCeEEEEeCCeeeEe-----cccC-------------------------------------C---CCCCeeeeCCce
Q psy16421         76 GSPPPSIMWRREGGEMIT-----NSFN-------------------------------------N---TVPPIVKIPSQL  110 (151)
Q Consensus        76 g~~~~~~~W~~~~~~~~~-----~~~~-------------------------------------~---~~~p~~~~~~~~  110 (151)
                      +.+.+.+.|++ +.....     ....                                     +   ..||.+. .+..
T Consensus       152 ~~~~~~i~W~k-~~~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~-~p~~  229 (326)
T PHA02785        152 SNVNADIIWSG-HRRLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQ-LPEG  229 (326)
T ss_pred             CCCCceEEEcc-CCccCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceec-CCCc
Confidence            57889999987 331100     0000                                     0   1233332 2355


Q ss_pred             eEeecCCcEEEEeeecccCCC---eeEEEcCCceec
Q psy16421        111 IGAHEGQQLVLECISEAYPKS---VNYWTREKGDMI  143 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~---~~~W~k~~~~~~  143 (151)
                      ..+..|+++.|.|.+.|.|.+   .++|+|||..+.
T Consensus       230 ~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~  265 (326)
T PHA02785        230 VVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYE  265 (326)
T ss_pred             EEecCCCcEEEEEEEECCCCCCCceEEEEECCEECC
Confidence            667789999999999998864   799999977653

>KOG4221|consensus

Probab=99.58  E-value=3.3e-14  Score=110.40  Aligned_cols=125  Identities=20%  Similarity=0.357  Sum_probs=94.8

Q ss_pred             ccCCeEEEEEEEcC-CCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEE
Q psy16421          6 REHMGAYLCIASNG-VPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMW   84 (151)
Q Consensus         6 ~~d~G~Y~C~~~~~-~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W   84 (151)
                      .-|+|.|+|.|.-. .|.-.+..+.|.+.             ..+.|..++  ...++..|+++.|.|.+.+.+.|.++|
T Consensus       110 ~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a-------------~~~~f~~~~--~~~t~~~g~ta~f~c~vn~e~~p~i~w  174 (1381)
T KOG4221|consen  110 KVDEGVYQCLATVEDVGSILSRTAKVALA-------------GLADFALQP--ESTTLLYGQTALFSCEVNAEPVPTIMW  174 (1381)
T ss_pred             cccCceEEEEEEccccceeecceEEEEec-------------ccCccccCc--cceeEecCCcEEEEEEEcCccCceeEE
Confidence            36899999999876 55455666666654             566676666  467888999999999999999999999


Q ss_pred             EeCCeeeEecccC-----------------------------------------------CCCCCeeeeCCceeEeecCC
Q psy16421         85 RREGGEMITNSFN-----------------------------------------------NTVPPIVKIPSQLIGAHEGQ  117 (151)
Q Consensus        85 ~~~~~~~~~~~~~-----------------------------------------------~~~~p~~~~~~~~~~~~~g~  117 (151)
                      .+ +.+++....+                                               ......|...+....+.+|+
T Consensus       175 ~k-n~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~  253 (1381)
T KOG4221|consen  175 LK-NDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGD  253 (1381)
T ss_pred             ec-ccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCC
Confidence            99 5565543333                                               01112245556777889999


Q ss_pred             cEEEEeeecccCCCeeEEEcCCceeccCC
Q psy16421        118 QLVLECISEAYPKSVNYWTREKGDMIANG  146 (151)
Q Consensus       118 ~~~l~C~~~g~p~~~~~W~k~~~~~~~~~  146 (151)
                      ++.|.|.+.|.|+|.|.|+|||..+.-++
T Consensus       254 ~v~leCvvs~~p~p~v~Wlrng~~i~~ds  282 (1381)
T KOG4221|consen  254 DVVLECVVSGVPKPSVKWLRNGEKISVDS  282 (1381)
T ss_pred             cEEEEEEecCCCCCceEEeeCCeeeeecc
Confidence            99999999999999999999987776543

>KOG4222|consensus

Probab=99.44  E-value=4e-13  Score=103.97  Aligned_cols=126  Identities=26%  Similarity=0.506  Sum_probs=101.4

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.++++.|+|.|.|.+.|..| .......++|             ..+|.|...+  .+..+.-|..++|.|.+.|+|.|
T Consensus       282 i~r~tp~deg~y~C~a~n~vG-~l~asa~ltV-------------~apP~f~kkp--~dq~v~lg~~vt~pc~~~gnP~P  345 (1281)
T KOG4222|consen  282 IDRVTPTDEGTYVCPAENLVG-GLEASATLTV-------------QAPPSFGKKP--RDQKVALGGTVTFPCETLGNPPP  345 (1281)
T ss_pred             ccccCCCcccceeeecccccc-ccccccceEE-------------ecCccccccc--CccccccCceEEeeeecCCCCCc
Confidence            567889999999999999998 5555556555             4899998887  56677789999999999999999


Q ss_pred             eEEEEeCCeeeEecccC-----------------------------------------------------C-CCCCeeee
Q psy16421         81 SIMWRREGGEMITNSFN-----------------------------------------------------N-TVPPIVKI  106 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~-----------------------------------------------------~-~~~p~~~~  106 (151)
                      .+.|.+++.+-+.....                                                     . .-+|.|..
T Consensus       346 avfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~  425 (1281)
T KOG4222|consen  346 AVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQ  425 (1281)
T ss_pred             ceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeee
Confidence            99999977666554310                                                     1 23455666


Q ss_pred             CCceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421        107 PSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       107 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      .+...+..++....|.|.+.|.|.|.+.|+++|-.+
T Consensus       426 g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v  461 (1281)
T KOG4222|consen  426 GPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNV  461 (1281)
T ss_pred             cccccccccCcccccChhhhCCCCCCchhhhccccc
Confidence            677777888999999999999999999999987544

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.30  E-value=2.9e-11  Score=75.46  Aligned_cols=72  Identities=21%  Similarity=0.380  Sum_probs=54.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC-CC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS-PP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-~~   79 (151)
                      |.+++.+|+|.|.|.+.+..+ .....+.|+|.             .+|.+...+  ......+|+.+.|.|.+.|. |.
T Consensus         5 i~~v~~~D~G~Y~C~~~~~~~-~~~~~~~l~v~-------------~~P~v~~~~--~~~~~~~~~~~~L~C~a~g~~P~   68 (139)
T cd05771           5 LPGLTVHDEGTYICSVSTPPH-QAQQIIQLSVS-------------EPPRVRLSL--EKLVSMIEEPQTLICHIAGYYPL   68 (139)
T ss_pred             ECCCCHHHCEEEEEEEEccCc-ceeeEEEEEEe-------------cCCceEEeC--CCceeecCCcEEEEEEECCCCCC
Confidence            578999999999999998766 45566666653             677776655  34444578899999999885 54


Q ss_pred             -CeEEEEeCC
Q psy16421         80 -PSIMWRREG   88 (151)
Q Consensus        80 -~~~~W~~~~   88 (151)
                       +.+.|++++
T Consensus        69 ~~~i~W~~~g   78 (139)
T cd05771          69 DVQVEWTREP   78 (139)
T ss_pred             CeEEEEEECC
Confidence             489999954

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.28  E-value=6.6e-11  Score=79.40  Aligned_cols=100  Identities=15%  Similarity=0.259  Sum_probs=66.0

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeec-----
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAAS-----   75 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-----   75 (151)
                      |.+++++|+|.|.|+|.|..+ .....+.|.|.             .++        ....+.+|+.+.|.|.+.     
T Consensus       102 I~~v~~~DsG~Y~C~a~N~~~-~~~~~i~L~V~-------------~~~--------~~~~~~~G~~v~L~C~~~~~~~~  159 (227)
T PHA02826        102 IGNVINIDEGIYICTISSGNI-CEESTIRLTFD-------------SGT--------INYQFNSGKDSKLHCYGTDGISS  159 (227)
T ss_pred             ECCCChHHCEEEEEEEEECCc-ceEEEEEEEEe-------------cCC--------ccceEecCCCEEEEeeCCCCccc
Confidence            578999999999999999776 44445555442             111        234567899999999975     


Q ss_pred             CCCCCeEEEEeCCeeeEecccCCC---CCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         76 GSPPPSIMWRREGGEMITNSFNNT---VPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        76 g~~~~~~~W~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +.|.|.+.|+| +++++....+..   ....+.+    ..+...+....+|.+.-
T Consensus       160 ~~p~p~I~WyK-ng~~l~~~~r~~~~~~~~~L~I----~~V~~~DsG~YtC~a~~  209 (227)
T PHA02826        160 TFKDYTLTWYK-NGNIVLYTDRIQLRNNNSTLVI----KSATHDDSGIYTCNLRF  209 (227)
T ss_pred             cCCCceEEEEE-CCEECCCCCCEEEeCCCCEEEE----CcCCHHhCEEEEEEEEE
Confidence            34578999999 677664322110   0011222    13567888899998754

>KOG4194|consensus

Probab=99.25  E-value=1.7e-11  Score=90.36  Aligned_cols=79  Identities=28%  Similarity=0.436  Sum_probs=65.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC-
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP-   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~-   79 (151)
                      |.||+.+|.|.|+|.|+|..| ..+..++|+|             ...|.+..+.  .+..+..|+++.+.|.+.+.|. 
T Consensus       673 Itnvk~eD~GiYtC~A~n~AG-~isanAtL~V-------------~e~p~f~~PL--~~~~V~~get~vlqC~a~~~~a~  736 (873)
T KOG4194|consen  673 ITNVKIEDQGIYTCTAQNVAG-QISANATLTV-------------LETPSFSIPL--EDQLVVVGETLVLQCLAEGAPAD  736 (873)
T ss_pred             EecccccccceeEEeeecccc-ceeeceEEEE-------------ecCCcccccc--cceEEEecceEEEEEecCCCCCC
Confidence            678999999999999999999 6777778766             4677777776  5678888999999999999886 


Q ss_pred             CeEEEEeCCeeeEeccc
Q psy16421         80 PSIMWRREGGEMITNSF   96 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~   96 (151)
                      |.+.|+| +.+++....
T Consensus       737 pr~~W~k-~d~pil~t~  752 (873)
T KOG4194|consen  737 PRLEWFK-EDKPILITE  752 (873)
T ss_pred             ccccccC-CCCceEEee
Confidence            9999999 556665433

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.14  E-value=2.8e-10  Score=80.50  Aligned_cols=78  Identities=23%  Similarity=0.503  Sum_probs=54.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccc----eEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKR----IMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~----~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g   76 (151)
                      |.+++.+|+|.|+|.+.|..+. ....    +.|.|.          ....+|.+.. +  ....+..|+.+.|.|.+.|
T Consensus       181 i~~v~~~d~G~Y~C~~~n~~g~-~~~~~t~~v~l~V~----------~~~~pp~~~~-p--~~~~~~~G~~v~L~C~a~g  246 (326)
T PHA02785        181 IEDVRKNDAGYYTCVLKYIYGD-KTYNVTRIVKLEVR----------DRIIPPTMQL-P--EGVVTSIGSNLTIACRVSL  246 (326)
T ss_pred             EeecChhhCeEEEEEEEeccCC-EEEeEEEEEEEEEe----------ccCCCceecC-C--CcEEecCCCcEEEEEEEEC
Confidence            5789999999999999998773 2222    223331          0123444432 3  4567778999999999998


Q ss_pred             CCC---CeEEEEeCCeeeEe
Q psy16421         77 SPP---PSIMWRREGGEMIT   93 (151)
Q Consensus        77 ~~~---~~~~W~~~~~~~~~   93 (151)
                      .|.   +.+.|++ |++.+.
T Consensus       247 ~P~~~~~~v~W~k-ng~~i~  265 (326)
T PHA02785        247 RPPTTDADVFWIS-NGMYYE  265 (326)
T ss_pred             CCCCCCceEEEEE-CCEECC
Confidence            775   4899999 666654

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=98.91  E-value=4.1e-09  Score=60.61  Aligned_cols=42  Identities=26%  Similarity=0.409  Sum_probs=38.2

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      ||.|...+....+.+|+++.|.|.+.|.|.|.++|+|++..+
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~   42 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPM   42 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCC
Confidence            578888888899999999999999999999999999987654

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.83  E-value=1e-08  Score=60.02  Aligned_cols=44  Identities=18%  Similarity=0.366  Sum_probs=39.5

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ||.|...+....+.+|+++.|.|.+.|.|.|.+.|+|+|..+..
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~   44 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLET   44 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECcc
Confidence            57888888889999999999999999999999999999876654

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.81  E-value=1.6e-08  Score=58.55  Aligned_cols=45  Identities=18%  Similarity=0.407  Sum_probs=39.8

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      .||.|...+....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~   46 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVS   46 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCC
Confidence            478888888889999999999999999999999999999766543

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.80  E-value=1e-08  Score=57.96  Aligned_cols=39  Identities=10%  Similarity=0.230  Sum_probs=33.8

Q ss_pred             eeCCceeEeecCCcEEEEeeecccCCC-eeEEEcCCceec
Q psy16421        105 KIPSQLIGAHEGQQLVLECISEAYPKS-VNYWTREKGDMI  143 (151)
Q Consensus       105 ~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~k~~~~~~  143 (151)
                      ...+..+.+.+|+++.|.|.+.|.|.| .|.|+|||..+.
T Consensus         2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~   41 (81)
T cd05749           2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLG   41 (81)
T ss_pred             cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECC
Confidence            345677889999999999999999999 699999987664

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=98.79  E-value=2e-08  Score=58.87  Aligned_cols=43  Identities=12%  Similarity=0.202  Sum_probs=38.0

Q ss_pred             CeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        102 PIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      |.|...+....+..|+.+.|.|.+.|.|+|.+.|+|+|..+..
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~   43 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQE   43 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecC
Confidence            5677778888999999999999999999999999999877653

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.79  E-value=5.7e-08  Score=65.33  Aligned_cols=36  Identities=11%  Similarity=0.261  Sum_probs=28.4

Q ss_pred             eeEeecCCcEEEEeeec-----ccCCCeeEEEcCCceeccC
Q psy16421        110 LIGAHEGQQLVLECISE-----AYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~-----g~p~~~~~W~k~~~~~~~~  145 (151)
                      ...+.+|+++.|.|.+.     +.|.|.++|+|||..+..+
T Consensus       138 ~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~  178 (227)
T PHA02826        138 NYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYT  178 (227)
T ss_pred             cceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCC
Confidence            34567899999999986     3467899999998876543

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.72  E-value=3.7e-08  Score=57.32  Aligned_cols=43  Identities=14%  Similarity=0.318  Sum_probs=33.8

Q ss_pred             CeeeeCCceeEee---cCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        102 PIVKIPSQLIGAH---EGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       102 p~~~~~~~~~~~~---~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      |.|...+..+.+.   +|+.+.|.|.+.|.|.|.++|+|||..+..
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~   47 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDT   47 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECcc
Confidence            5566666555443   478999999999999999999999876643

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.68  E-value=4.4e-08  Score=57.05  Aligned_cols=42  Identities=21%  Similarity=0.237  Sum_probs=35.0

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      |...+....+.+|+++.|.|.+.|.|.|.+.|+|+|..+...
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~   43 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLV   43 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccc
Confidence            345566777889999999999999999999999997766543

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.67  E-value=7.7e-08  Score=55.19  Aligned_cols=44  Identities=27%  Similarity=0.471  Sum_probs=37.1

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      |+.+...+....+.+|+++.|.|.+.|.|.|.++|+|++..+..
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~   44 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPS   44 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCC
Confidence            45566677788899999999999999999999999998765543

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.65  E-value=8.6e-08  Score=55.76  Aligned_cols=42  Identities=19%  Similarity=0.409  Sum_probs=33.6

Q ss_pred             CeeeeCCceeEeecC---CcEEEEeeecccCCCeeEEEcCCceec
Q psy16421        102 PIVKIPSQLIGAHEG---QQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       102 p~~~~~~~~~~~~~g---~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      |.|...+....+.+|   +++.|.|.+.|.|.|.++|++||..+.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~   46 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIK   46 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECc
Confidence            556666666665555   689999999999999999999987664

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.64  E-value=1.3e-07  Score=54.29  Aligned_cols=43  Identities=19%  Similarity=0.444  Sum_probs=38.4

Q ss_pred             CeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        102 PIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      |.|...+....+.+|+++.|.|.+.|.|.|.+.|+++|..+..
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~   43 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS   43 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceee
Confidence            5677778889999999999999999999999999999777665

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.64  E-value=1.4e-07  Score=55.30  Aligned_cols=44  Identities=23%  Similarity=0.369  Sum_probs=35.7

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCC-eeEEEcCCceeccC
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKS-VNYWTREKGDMIAN  145 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~k~~~~~~~~  145 (151)
                      ||.+.. +....+.+|+++.|.|.+.|.|.| .+.|++++..+...
T Consensus         2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~   46 (98)
T cd05758           2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESG   46 (98)
T ss_pred             CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCC
Confidence            566654 456678999999999999999999 59999997766543

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.62  E-value=1.1e-06  Score=51.24  Aligned_cols=77  Identities=26%  Similarity=0.625  Sum_probs=49.3

Q ss_pred             CCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCce---eE-----eecCCcE
Q psy16421         48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQL---IG-----AHEGQQL  119 (151)
Q Consensus        48 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~---~~-----~~~g~~~  119 (151)
                      +|.+...+  ....+.+|+.+.|.|.+.|.|.|.+.|++ +++.+...........+......   ..     +...+..
T Consensus         1 ~P~i~~~p--~~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G   77 (100)
T cd07693           1 PPRIVEHP--SDLIVSKGDPATLNCKAEGRPTPTIQWLK-NGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEG   77 (100)
T ss_pred             CCeEEecC--ceeEEcCCCeEEEEeeCCcCCCCEEEEEE-CCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCE
Confidence            35666665  56788899999999999999999999999 56665431100111111111110   01     1367888


Q ss_pred             EEEeeecc
Q psy16421        120 VLECISEA  127 (151)
Q Consensus       120 ~l~C~~~g  127 (151)
                      ...|.+..
T Consensus        78 ~Y~C~a~N   85 (100)
T cd07693          78 VYVCVAHN   85 (100)
T ss_pred             EEEEEEEc
Confidence            99999864

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.61  E-value=8.4e-08  Score=54.72  Aligned_cols=41  Identities=17%  Similarity=0.251  Sum_probs=34.7

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      |...+....+..|+++.|.|.+.|.|.|.+.|+|+|..+..
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~   42 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLAS   42 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCC
Confidence            34456677899999999999999999999999999876543

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=98.60  E-value=1.4e-07  Score=54.68  Aligned_cols=37  Identities=19%  Similarity=0.389  Sum_probs=32.5

Q ss_pred             CceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      +..+.+.+|+++.|.|.+.|.|.|.+.|+|+|..+..
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~   44 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALAL   44 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECcc
Confidence            5567889999999999999999999999999876643

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.59  E-value=1.4e-07  Score=54.35  Aligned_cols=38  Identities=18%  Similarity=0.215  Sum_probs=32.4

Q ss_pred             CCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        107 PSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       107 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ++....+.+|+.+.|.|.+.|.|.|.++|+++|..+..
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~   43 (90)
T cd04972           6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQ   43 (90)
T ss_pred             CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccC
Confidence            34556689999999999999999999999999876543

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.57  E-value=2.2e-07  Score=54.31  Aligned_cols=42  Identities=14%  Similarity=0.302  Sum_probs=34.6

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      .|.|...+....+..|+.+.|.|.+.|.|.|.++|++++..+
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~   43 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNI   43 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccc
Confidence            567776666655666899999999999999999999986554

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=98.57  E-value=7.2e-07  Score=51.22  Aligned_cols=73  Identities=29%  Similarity=0.429  Sum_probs=47.6

Q ss_pred             CCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC-CCCeeeeCCceeEeecCCcEEEEeeec
Q psy16421         48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT-VPPIVKIPSQLIGAHEGQQLVLECISE  126 (151)
Q Consensus        48 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~g~~~~l~C~~~  126 (151)
                      +|.+...+  .+..+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....... ..-.+.+.    .+...+.....|.+.
T Consensus         1 ~p~i~~~~--~~~~~~~G~~v~l~C~~~G~P~P~v~W~k-~~~~~~~~~~~~~~~~~L~I~----~v~~~D~G~Y~C~A~   73 (88)
T cd05851           1 PADINVKF--KDTYALKGQNVTLECFALGNPVPVIRWRK-ILEPMPATAEISMSGAVLKIF----NIQPEDEGTYECEAE   73 (88)
T ss_pred             CCceEEcc--ccEEEeCCCcEEEEEEecccCCCEEEEEE-CCcCCCCCCEEecCCCEEEEC----cCChhhCEEEEEEEE
Confidence            45666666  57788899999999999999999999999 444433211000 00112211    234577788999976


Q ss_pred             c
Q psy16421        127 A  127 (151)
Q Consensus       127 g  127 (151)
                      .
T Consensus        74 N   74 (88)
T cd05851          74 N   74 (88)
T ss_pred             c
Confidence            4

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=98.55  E-value=2.1e-07  Score=53.20  Aligned_cols=36  Identities=19%  Similarity=0.303  Sum_probs=31.8

Q ss_pred             ceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        109 QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ..+.+..|+.+.|.|.+.|.|+|.++|+|++..+..
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~   38 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTE   38 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECcc
Confidence            456789999999999999999999999999876654

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.55  E-value=1.8e-07  Score=54.42  Aligned_cols=44  Identities=23%  Similarity=0.540  Sum_probs=34.9

Q ss_pred             CCeeeeCC--ceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        101 PPIVKIPS--QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       101 ~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ||.|....  ....+..|+++.|.|.+.|.|.|.+.|+|+|..+..
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~   46 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIES   46 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcC
Confidence            45555543  344788999999999999999999999999766543

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.53  E-value=2.8e-07  Score=53.49  Aligned_cols=42  Identities=17%  Similarity=0.282  Sum_probs=32.3

Q ss_pred             CeeeeCCceeEeec---CCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421        102 PIVKIPSQLIGAHE---GQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       102 p~~~~~~~~~~~~~---g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      |.|...+..+.+.+   |..+.|.|.+.|.|.|.++|+|++..+.
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~   46 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDID   46 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEcc
Confidence            55666665554444   3479999999999999999999977653

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.52  E-value=1.6e-07  Score=51.42  Aligned_cols=28  Identities=18%  Similarity=0.490  Sum_probs=25.3

Q ss_pred             CCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421        116 GQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       116 g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      |+++.|.|.+.|.|.|.+.|+|+|..+.
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~   28 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELT   28 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECC
Confidence            6789999999999999999999987654

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.52  E-value=1.7e-07  Score=52.01  Aligned_cols=29  Identities=31%  Similarity=0.674  Sum_probs=26.2

Q ss_pred             cCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421        115 EGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       115 ~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      +|+++.|.|.+.|.|.|.++|+|+|..+.
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~   29 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLS   29 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECC
Confidence            68999999999999999999999977654

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.49  E-value=5.4e-07  Score=50.52  Aligned_cols=41  Identities=15%  Similarity=0.353  Sum_probs=34.7

Q ss_pred             CeeeeCCceeEeecCCcEEEEeeecccCCC-eeEEEcCCcee
Q psy16421        102 PIVKIPSQLIGAHEGQQLVLECISEAYPKS-VNYWTREKGDM  142 (151)
Q Consensus       102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~k~~~~~  142 (151)
                      |.+...+....+.+|+++.|.|.+.+.|.+ .+.|+|||..+
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l   42 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLL   42 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEe
Confidence            346667788889999999999999998864 59999998766

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.47  E-value=1.6e-07  Score=53.50  Aligned_cols=32  Identities=28%  Similarity=0.584  Sum_probs=27.4

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |.+++..|+|.|+|.|.|..+ ..+..+.|.|.
T Consensus        51 I~nv~~~dsG~YtC~a~n~~~-~~~a~a~L~V~   82 (85)
T cd05853          51 IRSIQLKHAGKYVCMVQTSVD-KLSAAADLIVR   82 (85)
T ss_pred             EecCCHHHCEEEEEEEEcccC-ceEEEEEEEEe
Confidence            678999999999999999998 66777777764

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.47  E-value=2.2e-07  Score=53.04  Aligned_cols=32  Identities=31%  Similarity=0.507  Sum_probs=27.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |.+++..|+|.|+|.|.|..| ..+..+.|.|.
T Consensus        51 I~~v~~~D~G~YtC~A~n~~g-~~~~~~~L~V~   82 (85)
T cd05854          51 IVNAQLSHAGTYTCTAQTVVD-SASASATLVVR   82 (85)
T ss_pred             EccCChhhCeEEEEEEecCCC-CEEEEEEEEEE
Confidence            578999999999999999998 66677777764

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=98.46  E-value=4.4e-07  Score=53.46  Aligned_cols=37  Identities=24%  Similarity=0.267  Sum_probs=31.9

Q ss_pred             CceeEeecCCcEEEEeeecc-cCCCeeEEEcCCceecc
Q psy16421        108 SQLIGAHEGQQLVLECISEA-YPKSVNYWTREKGDMIA  144 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~k~~~~~~~  144 (151)
                      ...+.+.+|+++.|.|.+.| .|+|.+.|+|||..+..
T Consensus        10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~   47 (101)
T cd04975          10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTN   47 (101)
T ss_pred             CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCC
Confidence            35677899999999999999 89999999999776653

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.46  E-value=2.9e-07  Score=51.33  Aligned_cols=28  Identities=21%  Similarity=0.360  Sum_probs=25.4

Q ss_pred             CCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421        116 GQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       116 g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      |+++.|.|.+.|.|.|.++|+|+|..+.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~   28 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIE   28 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEcc
Confidence            6889999999999999999999987664

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.44  E-value=5.6e-07  Score=52.69  Aligned_cols=38  Identities=24%  Similarity=0.308  Sum_probs=32.5

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcC
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTRE  138 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~  138 (151)
                      ++|.|.. +....+.+|+++.|.|.+.|.|.|.+.|+|+
T Consensus         1 ~~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~   38 (98)
T cd05870           1 VQPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRA   38 (98)
T ss_pred             CCCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEEC
Confidence            3567755 4567899999999999999999999999984

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.44  E-value=2.3e-07  Score=53.48  Aligned_cols=31  Identities=29%  Similarity=0.526  Sum_probs=25.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|+|.|.|..| .....+.|.|
T Consensus        59 I~~v~~~D~G~Y~C~A~N~~G-~~~~sa~L~V   89 (90)
T cd04974          59 LRNVSFDDAGEYTCLAGNSIG-PSHHSAWLTV   89 (90)
T ss_pred             EeccccccCcEEEEEeecccC-cccCCEEEEe
Confidence            567889999999999999999 5666777665

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=98.43  E-value=1.1e-06  Score=51.46  Aligned_cols=71  Identities=20%  Similarity=0.358  Sum_probs=47.6

Q ss_pred             eeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC-----CCCeeeeCCceeEeecCCcEEEEee
Q psy16421         50 DILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT-----VPPIVKIPSQLIGAHEGQQLVLECI  124 (151)
Q Consensus        50 ~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~-----~~p~~~~~~~~~~~~~g~~~~l~C~  124 (151)
                      .|...+  +.+.+..|+.+.|.|.+.|.|.+.+.|+| +++.+....+..     ..-.+.+    ..+...+....+|.
T Consensus         2 ~~~~~p--~~~~v~~G~~v~l~C~~~G~p~p~v~W~k-dg~~l~~~~~~~~~~~~~~s~L~I----~~~~~~D~G~Ytc~   74 (98)
T cd05762           2 QIIQFP--EDMKVRAGESVELFCKVTGTQPITCTWMK-FRKQIQEGEGIKIENTENSSKLTI----TEGQQEHCGCYTLE   74 (98)
T ss_pred             ceEECC--cCEEEECCCEEEEEEEEcccCCCceEEEE-CCEEecCCCcEEEEecCCeeEEEE----CCCChhhCEEEEEE
Confidence            344445  67889999999999999999999999999 677765332110     0011111    12455777788888


Q ss_pred             ecc
Q psy16421        125 SEA  127 (151)
Q Consensus       125 ~~g  127 (151)
                      +..
T Consensus        75 a~N   77 (98)
T cd05762          75 VEN   77 (98)
T ss_pred             EEc
Confidence            753

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=98.42  E-value=5.6e-07  Score=53.03  Aligned_cols=36  Identities=25%  Similarity=0.297  Sum_probs=31.7

Q ss_pred             eeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        110 LIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      ...+..|+.+.|.|.+.|+|+|.+.|+|||.++..+
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~   47 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIEN   47 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCC
Confidence            567889999999999999999999999998776543

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=98.42  E-value=1.6e-07  Score=52.30  Aligned_cols=30  Identities=27%  Similarity=0.219  Sum_probs=24.6

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI   31 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~   31 (151)
                      |.++.++|+|.|+|.|.|..| ..+..+.|.
T Consensus        45 I~~v~~~D~G~Y~C~A~N~~G-~~~~~a~L~   74 (75)
T cd05893          45 IQGATKEDAGWYTVSAKNEAG-IVSCTARLD   74 (75)
T ss_pred             ECCCCHHHCEEEEEEEEcCCC-EEEEEEEEe
Confidence            578999999999999999999 455555554

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.42  E-value=5.5e-07  Score=50.86  Aligned_cols=62  Identities=23%  Similarity=0.605  Sum_probs=42.0

Q ss_pred             CceEeecCCeEEEEeeecCCCCC-eEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPP-SIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~-~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      .++.+.+|+.+.|.|.+.|.|.| .+.|++ +++++.... ....-.+.+..      ..+.....|.++.
T Consensus         6 ~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k-~g~~l~~~~-~~~~s~L~i~~------~~d~g~Y~C~A~N   68 (81)
T cd05749           6 EDLSVTANTPFNLTCQAVGPPEPVEILWWQ-GGSPLGDPP-APSPSVLNVPG------LNETSKFSCEAHN   68 (81)
T ss_pred             CceEEcCCCCEEEEEEeeeecCCeEEEEEE-CCEECCCCC-CCCCCEEEEcc------ccCCeEEEEEEEe
Confidence            56788899999999999999999 799999 666654211 11112233222      1234589999865

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.42  E-value=2.4e-07  Score=53.55  Aligned_cols=32  Identities=38%  Similarity=0.529  Sum_probs=27.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++++|+|.|.|.|.|..|...+..+.|.|
T Consensus        59 I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          59 FNNVTRSDTGHYQCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             ECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence            57899999999999999999976777777665

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.42  E-value=2.5e-07  Score=50.33  Aligned_cols=31  Identities=26%  Similarity=0.443  Sum_probs=25.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.++..+|+|.|+|.|.|..| .....+.+++
T Consensus        35 i~~v~~~D~G~YtC~a~N~~g-~~~~~~~~~l   65 (67)
T cd05863          35 IKDVTEASAGTYTLVLWNSAA-GLEKRISLEL   65 (67)
T ss_pred             ECCCCHHHCEEEEEEEEECCc-cEEEEEEEEE
Confidence            578999999999999999998 4555655554

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.41  E-value=5.6e-07  Score=51.15  Aligned_cols=34  Identities=9%  Similarity=0.301  Sum_probs=30.0

Q ss_pred             eEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        111 IGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~   37 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQ   37 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCC
Confidence            4578899999999999999999999999877654

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.41  E-value=5.1e-07  Score=51.82  Aligned_cols=32  Identities=31%  Similarity=0.333  Sum_probs=27.0

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |.++..+|+|.|+|.|.|..| .....+.|.|.
T Consensus        51 I~~~~~~D~G~YtC~A~N~~G-~~~~~~~L~V~   82 (88)
T cd05735          51 ILPTVREDSGFFSCHAINSYG-EDRGIIQLTVQ   82 (88)
T ss_pred             ECCCCcccCEEEEEEEEcCCC-cceEEEEEEEe
Confidence            567889999999999999999 56677777774

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.40  E-value=5.1e-07  Score=50.33  Aligned_cols=29  Identities=21%  Similarity=0.440  Sum_probs=25.9

Q ss_pred             CCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        116 GQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       116 g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      |+.+.|.|.+.|.|.|.++|+|+|..+..
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~   29 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEG   29 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCC
Confidence            78899999999999999999999876654

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.40  E-value=3.7e-07  Score=51.26  Aligned_cols=31  Identities=39%  Similarity=0.587  Sum_probs=26.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI   31 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~   31 (151)
                      |.++..+|+|.|.|.|.|..|...+..+.|+
T Consensus        48 I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~   78 (79)
T cd05734          48 IKHVLEEDSGYYLCKVSNDVGADASKSMVLT   78 (79)
T ss_pred             ECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence            5688999999999999999997666666654

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.40  E-value=3.4e-07  Score=52.18  Aligned_cols=32  Identities=34%  Similarity=0.507  Sum_probs=26.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |.+++.+|+|.|+|.|.|..| ..+..+.|.|.
T Consensus        51 I~~v~~~D~G~Y~C~a~n~~g-~~~~~~~l~V~   82 (85)
T cd04970          51 IRNAQLKHAGKYTCTAQTVVD-SLSASADLIVR   82 (85)
T ss_pred             EccCCHHhCeeeEEEEecCCC-cEEEEEEEEEE
Confidence            578999999999999999988 56667777764

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.38  E-value=9.3e-07  Score=51.42  Aligned_cols=41  Identities=24%  Similarity=0.361  Sum_probs=33.5

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      +|.|.. .....+.+|+++.|.|.+.|.|.|.+.|++++..+
T Consensus         2 ~P~i~~-~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~   42 (96)
T cd05732           2 QPKITY-LENQTAVELEQITLTCEAEGDPIPEITWRRATRNF   42 (96)
T ss_pred             Ccccee-cCceeEecCCcEEEEEEEeEcCCCcEEEEECCccc
Confidence            466653 34567899999999999999999999999986443

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=98.37  E-value=2.8e-07  Score=51.32  Aligned_cols=30  Identities=20%  Similarity=0.203  Sum_probs=24.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI   31 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~   31 (151)
                      |.+++.+|+|.|+|.|.|..| ..+..+.|.
T Consensus        45 I~~~~~~D~G~Y~C~A~N~~G-~~~~~a~L~   74 (75)
T cd05892          45 IKNVNKKDAGWYTVSAVNEAG-VATCHARLD   74 (75)
T ss_pred             ECCCChhhCEEEEEEEEcCcC-eEEEEEEEe
Confidence            578999999999999999999 455555543

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.36  E-value=1.1e-06  Score=50.83  Aligned_cols=37  Identities=22%  Similarity=0.430  Sum_probs=32.2

Q ss_pred             CceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|+|++..+..
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~   44 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIEL   44 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCC
Confidence            5567889999999999999999999999999776543

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=98.36  E-value=3.6e-07  Score=50.59  Aligned_cols=30  Identities=20%  Similarity=0.392  Sum_probs=24.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI   31 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~   31 (151)
                      |.+++++|+|.|+|.|.|..| .....+.|.
T Consensus        43 I~~v~~~D~G~Y~C~A~N~~G-~~~~~~~l~   72 (73)
T cd05852          43 ILNITKLDEGSYTCFAENNRG-KANSTGVLS   72 (73)
T ss_pred             ECcCChhHCEEEEEEEECCCC-ceeEEEEEE
Confidence            578999999999999999998 455555543

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.36  E-value=3.7e-07  Score=50.19  Aligned_cols=31  Identities=26%  Similarity=0.431  Sum_probs=25.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|+|.|.|..| .....+.|.|
T Consensus        40 I~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~V   70 (71)
T cd05876          40 LDNVLESDDGEYVCTAENSEG-SARHHYTVTV   70 (71)
T ss_pred             EcccCHHhCEEEEEEEEcCCC-eEEEEEEEEE
Confidence            568899999999999999999 4556666554

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.36  E-value=1.8e-06  Score=50.48  Aligned_cols=49  Identities=18%  Similarity=0.366  Sum_probs=37.6

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCe-eEEEcCCceeccCCCCCC
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSV-NYWTREKGDMIANGKTPF  150 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~k~~~~~~~~~~~~~  150 (151)
                      ||.| .....+.+.+|+++.|.|.+.+.|+|. |.|++++..+..+...+|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~   51 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERY   51 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCE
Confidence            5666 567778899999999999998888886 899887665544434444

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.33  E-value=1.7e-06  Score=51.66  Aligned_cols=44  Identities=16%  Similarity=0.262  Sum_probs=32.7

Q ss_pred             CCCeeeeCCceeEe----ecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421        100 VPPIVKIPSQLIGA----HEGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       100 ~~p~~~~~~~~~~~----~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      .+|.|...+....+    ..|.++.|.|.+.|.|.|.++|+|||..+.
T Consensus         3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~   50 (109)
T cd05773           3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLD   50 (109)
T ss_pred             cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECC
Confidence            45666655442222    256899999999999999999999977664

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.33  E-value=5e-07  Score=52.05  Aligned_cols=31  Identities=29%  Similarity=0.504  Sum_probs=26.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|+|.|.|..| .....+.|.|
T Consensus        59 I~~v~~~D~G~Y~C~A~N~~G-~~~~~a~L~V   89 (90)
T cd05858          59 LRNVTFEDAGEYTCLAGNSIG-ISHHSAWLTV   89 (90)
T ss_pred             EccCCHHHCEEEEEEEEeCCC-cccceEEEEE
Confidence            578999999999999999999 5666666655

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>PHA03376 BARF1; Provisional

Probab=98.33  E-value=1.8e-06  Score=55.59  Aligned_cols=73  Identities=26%  Similarity=0.414  Sum_probs=44.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|.|.|+|..+..... .-..-.|.+             -.|-.+.......+  ....+...+.|...|.|.|
T Consensus        91 I~~l~lSDdGtY~C~fQkge~~-~~k~ehLt~-------------V~~~~Lsv~a~~~d--Fp~~~~~~i~C~sggfP~P  154 (221)
T PHA03376         91 VTAANISHDGNYLCRMKLGETE-VTKQEHLSV-------------VKPLTLSVHSERSQ--FPDFSVLTVTCTVNAFPHP  154 (221)
T ss_pred             EEeeeecCCceEEEEEEcCCCc-eeeeeeeee-------------eecceEEEEecccc--CCCCCeeEEEEecCCcCCc
Confidence            5789999999999999886532 111111111             12222222111011  1124677889998899999


Q ss_pred             eEEEEeCCe
Q psy16421         81 SIMWRREGG   89 (151)
Q Consensus        81 ~~~W~~~~~   89 (151)
                      .++|+.++|
T Consensus       155 ~~~Wle~~~  163 (221)
T PHA03376        155 HVQWLMPEG  163 (221)
T ss_pred             hheeccccC
Confidence            999998655

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.32  E-value=5.8e-06  Score=47.33  Aligned_cols=73  Identities=26%  Similarity=0.575  Sum_probs=50.2

Q ss_pred             CeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCC-----CCCCeeeeCCceeEeecCCcEEEEe
Q psy16421         49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN-----TVPPIVKIPSQLIGAHEGQQLVLEC  123 (151)
Q Consensus        49 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~~~~g~~~~l~C  123 (151)
                      |.|...+  ..+.+.+|+++.|.|.+.+.|.+.+.|++ ++..+....+.     .....+.+.    .+...+.....|
T Consensus         1 P~~~~~~--~~~~v~~G~~~~l~c~~~~~p~~~v~W~~-~~~~l~~~~~~~~~~~~~~~~L~I~----~v~~~D~G~Y~C   73 (90)
T PF07679_consen    1 PVFTKKP--KDVTVKEGESVTLECEVSGNPPPTVTWYK-NGRPLTSSQRYQIESDGGSSSLTIK----NVTREDAGTYTC   73 (90)
T ss_dssp             EEEEEES--SEEEEETTSEEEEEEEEEESSSSEEEEEE-TTEEEESSSSEEEEEETTEEEEEES----SESGGGSEEEEE
T ss_pred             CEEEEec--CCEEEeCCCEEEEEEEEEeCCCCcccccc-cccceeeeeeeeeecccceeEEccC----CCChhhCEEEEE
Confidence            3444445  67889999999999999999999999999 57776653320     111112222    255678889999


Q ss_pred             eeccc
Q psy16421        124 ISEAY  128 (151)
Q Consensus       124 ~~~g~  128 (151)
                      .+...
T Consensus        74 ~~~n~   78 (90)
T PF07679_consen   74 VASNS   78 (90)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            88653

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.32  E-value=4.8e-07  Score=52.37  Aligned_cols=32  Identities=19%  Similarity=0.378  Sum_probs=25.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.++..+|+|.|+|.|.|..|....+.+.|.+
T Consensus        60 I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~   91 (92)
T cd05866          60 IYNANIEDAGIYRCQATDAKGQTQEATVVLEI   91 (92)
T ss_pred             EecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence            57889999999999999999865555555543

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.31  E-value=6.3e-07  Score=49.78  Aligned_cols=31  Identities=35%  Similarity=0.534  Sum_probs=25.4

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|.|.|.|..| ..+..+.|.|
T Consensus        44 I~~~~~~D~G~Y~C~A~N~~G-~~~~~~~l~V   74 (75)
T cd05763          44 IVDVKIEDTGVYSCTAQNTAG-SISANATLTV   74 (75)
T ss_pred             EeeCCcccCEEEEEEEEcCCC-EEEeeEEEEE
Confidence            568899999999999999998 5566666654

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.31  E-value=1.6e-05  Score=46.11  Aligned_cols=59  Identities=19%  Similarity=0.366  Sum_probs=37.8

Q ss_pred             cCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeE---e-ecCCcEEEEeeecc
Q psy16421         64 EGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIG---A-HEGQQLVLECISEA  127 (151)
Q Consensus        64 ~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~-~~g~~~~l~C~~~g  127 (151)
                      +|+.+.|.|.+.|.|.|.+.|++ ++..+.....    ..+........   + ...+.....|.+..
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k-~g~~l~~~~~----~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N   80 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLR-NGTEIDTESD----YRYSLIDGNLIISNPSEVKDSGRYQCLATN   80 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEE-CCeECccCCC----ceEEeeCCeEEEccCCccCcCEEEEEEEEc
Confidence            47899999999999999999999 5666542110    11111111111   1 23677889999864

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=98.31  E-value=1.1e-06  Score=48.70  Aligned_cols=29  Identities=24%  Similarity=0.605  Sum_probs=25.4

Q ss_pred             CCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        116 GQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       116 g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      |+++.|.|.+.|.|.|.+.|+|++..+..
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~   29 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVN   29 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEeccc
Confidence            68899999999999999999998765543

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.30  E-value=1.2e-06  Score=48.19  Aligned_cols=28  Identities=18%  Similarity=0.500  Sum_probs=24.3

Q ss_pred             cEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        118 QLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       118 ~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      ++.|.|.+.|.|.|.++|+|+|..+...
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~   28 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPS   28 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCC
Confidence            4789999999999999999998776543

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.30  E-value=1.1e-06  Score=48.78  Aligned_cols=30  Identities=20%  Similarity=0.347  Sum_probs=26.3

Q ss_pred             CCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        116 GQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       116 g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      |+++.|.|.+.|.|.|.+.|+++|..+...
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~   30 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEEL   30 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCC
Confidence            788999999999999999999998766543

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.30  E-value=1.7e-06  Score=50.48  Aligned_cols=39  Identities=13%  Similarity=0.129  Sum_probs=30.8

Q ss_pred             eCCceeEeecCCcEEEEeeecccCC-CeeEEEc-CCceecc
Q psy16421        106 IPSQLIGAHEGQQLVLECISEAYPK-SVNYWTR-EKGDMIA  144 (151)
Q Consensus       106 ~~~~~~~~~~g~~~~l~C~~~g~p~-~~~~W~k-~~~~~~~  144 (151)
                      +.+....+..|+++.|.|.+.|.|. |.++|++ +|..+..
T Consensus         5 ~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~   45 (96)
T cd05865           5 IVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTP   45 (96)
T ss_pred             EeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccc
Confidence            4455567899999999999999995 7999998 6544443

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.30  E-value=2.1e-06  Score=48.83  Aligned_cols=37  Identities=19%  Similarity=0.351  Sum_probs=31.6

Q ss_pred             CceeEeecCCcEEEEeee-cccCCCeeEEEcCCceecc
Q psy16421        108 SQLIGAHEGQQLVLECIS-EAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~k~~~~~~~  144 (151)
                      +....+.+|+++.|.|.+ .|.|.|.+.|+|+|..+..
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~   40 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNL   40 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCC
Confidence            456678899999999998 7999999999999776654

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.30  E-value=2.2e-06  Score=49.56  Aligned_cols=74  Identities=24%  Similarity=0.552  Sum_probs=48.9

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCC-----CeeeeCCceeEeecCCcEEE
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVP-----PIVKIPSQLIGAHEGQQLVL  121 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~-----p~~~~~~~~~~~~~g~~~~l  121 (151)
                      .||.+...+  ....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....+....     -.+.+.    .+...+....
T Consensus         2 ~~~~~~~~p--~~~~~~~G~~~~L~C~~~g~P~p~v~W~k-~g~~l~~~~~~~~~~~~~~~~L~i~----~~~~~D~G~Y   74 (92)
T cd05747           2 LPATILTKP--RSLTVSEGESARFSCDVDGEPAPTVTWMR-EGQIIVSSQRHQITSTEYKSTFEIS----KVQMSDEGNY   74 (92)
T ss_pred             CCCcccccC--ccEEEeCCCcEEEEEEEeecCCCEEEEEE-CCEECCCCCcEEEEEcCCeeEEEEC----CCCcccCEeE
Confidence            356666666  67889999999999999999999999999 55554322110000     011111    2445777888


Q ss_pred             Eeeecc
Q psy16421        122 ECISEA  127 (151)
Q Consensus       122 ~C~~~g  127 (151)
                      .|.+..
T Consensus        75 ~C~a~N   80 (92)
T cd05747          75 TVVVEN   80 (92)
T ss_pred             EEEEEc
Confidence            888753

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.30  E-value=9e-07  Score=49.07  Aligned_cols=32  Identities=25%  Similarity=0.400  Sum_probs=26.6

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus        42 i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738          42 IENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             ECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            56889999999999999999966666666655

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.30  E-value=2.6e-06  Score=49.14  Aligned_cols=42  Identities=12%  Similarity=0.245  Sum_probs=31.7

Q ss_pred             CeeeeCCceeEee---cCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421        102 PIVKIPSQLIGAH---EGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       102 p~~~~~~~~~~~~---~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      |.|...+..+.+.   .|.++.|.|.+.|.|.|.++|+|++..+.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~   46 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEID   46 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECC
Confidence            4555555555443   34679999999999999999999977663

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.30  E-value=5.1e-07  Score=50.04  Aligned_cols=30  Identities=30%  Similarity=0.337  Sum_probs=24.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI   31 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~   31 (151)
                      |.+++.+|+|.|+|.|.|..| .....+.|.
T Consensus        44 I~~v~~~D~G~Y~C~A~N~~G-~~~~~~~L~   73 (74)
T cd05745          44 ISRVALHDQGQYECQAVNIVG-SQRTVAQLT   73 (74)
T ss_pred             EeeCCHHhCEEEEEEEEeCCC-ceeEEEEEe
Confidence            578999999999999999998 455555543

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.29  E-value=7.4e-07  Score=51.60  Aligned_cols=31  Identities=19%  Similarity=0.372  Sum_probs=24.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI   31 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~   31 (151)
                      |.+++.+|+|.|+|.|.|..|......+.|+
T Consensus        61 I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~   91 (92)
T cd04977          61 IYNANIEDAGIYKCVATDAKGTESEATVNLK   91 (92)
T ss_pred             EecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence            5789999999999999999775555555543

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.29  E-value=5.7e-07  Score=49.09  Aligned_cols=30  Identities=27%  Similarity=0.410  Sum_probs=23.8

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI   31 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~   31 (151)
                      |.+++.+|+|.|+|.|.|..| .....+.|.
T Consensus        39 I~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~   68 (69)
T cd05725          39 IRNVTAGDEGSYTCEAENMVG-KIEASASLT   68 (69)
T ss_pred             ECcCChhHCEEEEEEEEcCCC-cEEEEEEEE
Confidence            578999999999999999998 444554443

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=98.29  E-value=6.5e-07  Score=49.79  Aligned_cols=30  Identities=27%  Similarity=0.233  Sum_probs=24.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI   31 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~   31 (151)
                      |.+++.+|+|.|+|.|.|..| .....+.|.
T Consensus        45 I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~   74 (75)
T cd05744          45 IQNANKEDAGWYTVSAVNEAG-VVSCNARLD   74 (75)
T ss_pred             ECCCCcccCEEEEEEEEcCCC-cEEEEEEEe
Confidence            578999999999999999999 455555543

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.29  E-value=2.2e-05  Score=45.53  Aligned_cols=72  Identities=19%  Similarity=0.384  Sum_probs=43.5

Q ss_pred             CeeEeCCCCCceEeec---CCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEe---e-cCCcEEE
Q psy16421         49 PDILDYPTSSDIMVRE---GSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGA---H-EGQQLVL  121 (151)
Q Consensus        49 p~~~~~~~~~~~~~~~---g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~-~g~~~~l  121 (151)
                      |.|...|  ..+.+.+   |+.+.|.|.+.|+|.|.+.|++ ++..+.....    ..+........+   . ..+....
T Consensus         2 P~f~~~P--~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~-~g~~l~~~~~----~~~~~~~g~L~I~~~~~~~D~G~Y   74 (94)
T cd05850           2 PVFEEQP--SSLLFPEGSPEEKVTLGCRARASPPATYRWKM-NGTEIKFAPE----SRYTLVAGNLVINNPQKARDAGSY   74 (94)
T ss_pred             CeeEECC--CCEEecCCCCCCeEEEEeEceeCCCCEEEEEE-CCEECccCCC----ceEEEECCeEEEccCCccCcCEEE
Confidence            4444444  3444444   4689999999999999999999 5666542211    111111111111   2 3678889


Q ss_pred             Eeeecc
Q psy16421        122 ECISEA  127 (151)
Q Consensus       122 ~C~~~g  127 (151)
                      .|.+..
T Consensus        75 ~C~A~N   80 (94)
T cd05850          75 QCLAIN   80 (94)
T ss_pred             EEEEEc
Confidence            999863

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.28  E-value=1.2e-06  Score=50.47  Aligned_cols=32  Identities=31%  Similarity=0.503  Sum_probs=27.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |.+++.+|+|.|+|.|.|..| .....+.|.|.
T Consensus        51 I~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~V~   82 (90)
T cd05726          51 ITNVQRSDVGYYICQTLNVAG-SILTKAYLEVT   82 (90)
T ss_pred             EeeCChhhCEEEEEEEEcCCC-ceEEEEEEEEe
Confidence            578999999999999999999 56677888775

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.27  E-value=9.3e-07  Score=51.59  Aligned_cols=32  Identities=16%  Similarity=0.329  Sum_probs=24.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|+|.|.|..+......+.|.|
T Consensus        64 I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          64 IYNANIDDAGIYKCVVSNEDEGESEATVNVKI   95 (96)
T ss_pred             EeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence            56899999999999999997435555555543

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.27  E-value=6.8e-07  Score=49.14  Aligned_cols=30  Identities=33%  Similarity=0.512  Sum_probs=23.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI   31 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~   31 (151)
                      |.+++.+|+|.|+|.|.|..| .....+.|.
T Consensus        41 i~~v~~~D~G~Y~C~A~N~~G-~~~~~~~L~   70 (71)
T cd05723          41 VLGLVKSDEGFYQCIAENDVG-NVQASAQLI   70 (71)
T ss_pred             EEcCCcccCEEEEEEEEcCCC-EEEEEEEEE
Confidence            357899999999999999999 455555543

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.27  E-value=8.5e-07  Score=49.09  Aligned_cols=30  Identities=20%  Similarity=0.219  Sum_probs=24.0

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI   31 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~   31 (151)
                      |.++..+|+|.|+|.|.|..| ..+..+.|.
T Consensus        44 I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~   73 (74)
T cd05748          44 IKNAERSDSGKYTLTLKNPAG-EKSATINVK   73 (74)
T ss_pred             ECCCCcCcCEEEEEEEECCCc-cEEEEEEEE
Confidence            568999999999999999998 455555543

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.26  E-value=7.6e-07  Score=49.19  Aligned_cols=30  Identities=23%  Similarity=0.340  Sum_probs=23.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI   31 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~   31 (151)
                      |.+++++|+|.|+|.|.|..| .....+.|.
T Consensus        43 i~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~   72 (73)
T cd04969          43 ILNVTKSDEGKYTCFAENFFG-KANSTGSLS   72 (73)
T ss_pred             EccCChhHCEEEEEEEECCCC-ceEEEEEEE
Confidence            578999999999999999998 444554443

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.25  E-value=8.1e-07  Score=48.64  Aligned_cols=31  Identities=39%  Similarity=0.562  Sum_probs=24.8

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|+|.|.|..| .....+.|.|
T Consensus        40 i~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~V   70 (71)
T cd05731          40 IDNVSEEDDGEYRCTASNSLG-SARHTISVTV   70 (71)
T ss_pred             ECCCCHHHCEEEEEEEEeCCc-eEEEEEEEEE
Confidence            568899999999999999998 4555555544

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.25  E-value=9.1e-07  Score=48.66  Aligned_cols=31  Identities=23%  Similarity=0.506  Sum_probs=24.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|+|.|.|..| .....+.+.+
T Consensus        39 I~~v~~~D~G~YtC~a~N~~g-~~~~~~~~~~   69 (71)
T cd04976          39 IKDVTEEDAGNYTVVLTNKQA-KLEKRLTFTL   69 (71)
T ss_pred             ECcCCHHHCEEEEEEEEcCCc-cEEEEEEEEE
Confidence            578999999999999999988 4445555443

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=98.25  E-value=1.2e-06  Score=48.70  Aligned_cols=26  Identities=27%  Similarity=0.511  Sum_probs=22.6

Q ss_pred             EEEEeeecccCCCeeEEEcCCceecc
Q psy16421        119 LVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       119 ~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      +.|.|.+.|.|.|.+.|+|+|..+..
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~   26 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQY   26 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcC
Confidence            47999999999999999999776653

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=98.24  E-value=2e-06  Score=48.13  Aligned_cols=28  Identities=18%  Similarity=0.564  Sum_probs=25.0

Q ss_pred             CCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421        116 GQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       116 g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      |+++.|.|.+.|.|.|.+.|++++..+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~   28 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVP   28 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECC
Confidence            6889999999999999999999876654

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.24  E-value=9.9e-06  Score=46.33  Aligned_cols=66  Identities=30%  Similarity=0.551  Sum_probs=41.5

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++++.............-.+.+.    .+...+.....|.+..
T Consensus         9 ~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~----~v~~~D~G~Y~C~a~N   74 (88)
T cd04968           9 KDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIP----NIQFEDEGTYECEAEN   74 (88)
T ss_pred             CceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEEC----CCCcccCEEEEEEEEE
Confidence            56678899999999999999999999999543221110000000111111    2345777889998753

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.23  E-value=1.3e-06  Score=48.67  Aligned_cols=31  Identities=23%  Similarity=0.314  Sum_probs=25.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++++|+|.|.|.|.|..| .....+.|.|
T Consensus        45 I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~V   75 (76)
T cd05867          45 LTDVQPSDTAVYQCEARNRHG-NLLANAHVHV   75 (76)
T ss_pred             ECCCChhhCEEEEEEEECCCC-eEEEEEEEEE
Confidence            578999999999999999998 4555666654

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=98.23  E-value=1.4e-06  Score=48.46  Aligned_cols=26  Identities=23%  Similarity=0.603  Sum_probs=22.7

Q ss_pred             EEEEeeecccCCCeeEEEcCCceecc
Q psy16421        119 LVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       119 ~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      +.|.|.+.|.|.|.++|+|++..+..
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~   26 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTH   26 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCC
Confidence            47999999999999999999776653

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.23  E-value=1.2e-06  Score=47.64  Aligned_cols=25  Identities=20%  Similarity=0.316  Sum_probs=22.1

Q ss_pred             EEEEeeecccCCCeeEEEcCCceec
Q psy16421        119 LVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       119 ~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      +.|.|.+.|.|+|.+.|+|||..+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~   25 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLIS   25 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECc
Confidence            4689999999999999999987664

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.22  E-value=1.4e-06  Score=47.79  Aligned_cols=22  Identities=23%  Similarity=0.477  Sum_probs=19.9

Q ss_pred             CccccccCCeEEEEEEEcCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP   22 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~   22 (151)
                      |.++..+|+|.|+|.|.|..|.
T Consensus        38 I~~v~~~D~G~YtC~a~N~~G~   59 (70)
T cd05864          38 IYEVTEKDAGNYTVVLTNPITK   59 (70)
T ss_pred             ECcCCHHHCEEEEEEEEECCCc
Confidence            5688999999999999999983

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.22  E-value=1.5e-06  Score=49.10  Aligned_cols=29  Identities=28%  Similarity=0.267  Sum_probs=22.8

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIML   30 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l   30 (151)
                      |.+++.+|+|.|+|.|.|..| .....+.+
T Consensus        50 I~~~~~~D~G~YtC~A~N~~G-~~~~~~~~   78 (81)
T cd04971          50 FDNPTHVNNGNYTLVASNEYG-QDSKSISA   78 (81)
T ss_pred             ECCCCcccCeEEEEEEEeCCC-CeeeEEEe
Confidence            467899999999999999999 44444433

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=98.22  E-value=1.8e-06  Score=48.51  Aligned_cols=29  Identities=17%  Similarity=0.213  Sum_probs=22.8

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIML   30 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l   30 (151)
                      |.++..+|+|.|+|.|.|..| .....+.+
T Consensus        48 i~~~~~~D~G~YtC~A~N~~G-~~~~~~~~   76 (79)
T cd05855          48 LDNPTHLNNGIYTLVAKNEYG-EDEKNVSA   76 (79)
T ss_pred             ECCCCcccCEEEEEEEEcCCc-ccceEEEe
Confidence            567889999999999999999 44444443

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.22  E-value=1.3e-06  Score=49.67  Aligned_cols=31  Identities=19%  Similarity=0.403  Sum_probs=24.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|.|.|.|..+ ..+....|.|
T Consensus        53 I~~v~~~DsG~Y~C~a~n~~~-~~~~s~~v~v   83 (84)
T cd05742          53 IPNATLKDSGTYTCAASSGTM-DQKESTKVNI   83 (84)
T ss_pred             ECCCChhhCEEEEEEEccCCC-ceEEEEEEEE
Confidence            578999999999999999988 4555555544

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.21  E-value=3.1e-05  Score=43.38  Aligned_cols=60  Identities=18%  Similarity=0.393  Sum_probs=42.7

Q ss_pred             CceEeecCCeEEEEeeecCCCC-CeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeeccc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPP-PSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAY  128 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~-~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~  128 (151)
                      ....+.+|+++.|.|.+.+.|. ..+.|++ +++.+...     ...+.+.    .+ ..+.....|.+.+.
T Consensus         8 ~~~~v~~G~~V~L~C~~~~~p~~~~~~W~k-ng~~l~~~-----~~~l~i~----~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           8 PWTTIFQGEKVTLTCNGFNSPEQNSTQWYH-NGKLLETT-----TNSYRIR----AA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CCeEeeCCCCEEEEEeCCCCCCCccEEEEE-CCEEeecc-----CCeEEEe----ec-ccCCEEeEEECCCC
Confidence            4577889999999999998775 5799999 66665321     1233322    23 77888999998753

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.20  E-value=1.7e-06  Score=48.38  Aligned_cols=24  Identities=25%  Similarity=0.608  Sum_probs=21.6

Q ss_pred             EEEEeeecccCCCeeEEEcCCcee
Q psy16421        119 LVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       119 ~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      +.|.|.+.|.|.|.++|+|+|..+
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l   24 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHF   24 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeEC
Confidence            479999999999999999998765

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.19  E-value=1.7e-06  Score=48.36  Aligned_cols=25  Identities=24%  Similarity=0.549  Sum_probs=22.0

Q ss_pred             EEEEeeecccCCCeeEEEcCCceec
Q psy16421        119 LVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       119 ~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      +.|.|.+.|.|.|.++|+|+|..+.
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~   25 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFD   25 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECC
Confidence            4789999999999999999977654

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.19  E-value=1.6e-06  Score=48.35  Aligned_cols=31  Identities=23%  Similarity=0.307  Sum_probs=25.4

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|+|.|.|..| .....+.|.|
T Consensus        45 i~~v~~~D~G~Y~C~A~N~~G-~~~~~~~l~v   75 (76)
T cd05868          45 FSKVQERSSAVYQCNASNEYG-YLLANAFVNV   75 (76)
T ss_pred             ECCCCHhhCEEEEEEEEcCCC-EEEEEEEEEe
Confidence            467899999999999999999 5666666654

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.18  E-value=1.7e-06  Score=48.05  Aligned_cols=31  Identities=23%  Similarity=0.293  Sum_probs=25.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|+|.|.|..| .....+.|.|
T Consensus        45 i~~v~~~D~G~Y~C~A~N~~G-~~~~~~~l~V   75 (76)
T cd04978          45 LSNVQPNDTAVYQCNASNVHG-YLLANAFVHV   75 (76)
T ss_pred             ECCCChhhCEEEEEEEEccCC-eEEEeEEEEE
Confidence            568899999999999999998 4556666554

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.18  E-value=1.5e-06  Score=49.48  Aligned_cols=31  Identities=29%  Similarity=0.428  Sum_probs=25.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI   31 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~   31 (151)
                      |.+++.+|+|.|+|.+.|..|...+..+.|.
T Consensus        55 I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~   85 (86)
T cd05724          55 IAEARKSDEGTYKCVATNMVGERESAAARLS   85 (86)
T ss_pred             EeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence            5688999999999999999986556555543

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.18  E-value=2e-06  Score=48.10  Aligned_cols=24  Identities=25%  Similarity=0.573  Sum_probs=21.3

Q ss_pred             EEEEeeecccCCCeeEEEcCCcee
Q psy16421        119 LVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       119 ~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      +.|.|.+.|+|.|.++|+|+|..+
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~   24 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFF   24 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEc
Confidence            469999999999999999997654

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.17  E-value=1.4e-06  Score=48.99  Aligned_cols=30  Identities=20%  Similarity=0.299  Sum_probs=23.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI   31 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~   31 (151)
                      |.+++.+|+|.|.|.|.|..| .....+.|.
T Consensus        51 I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~   80 (81)
T cd05765          51 IYNAQPQDAGLYTCTARNSGG-LLRANFPLS   80 (81)
T ss_pred             EccCCcccCEEEEEEEecCCc-eEEEEEEEe
Confidence            567899999999999999999 455555543

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.17  E-value=3.3e-06  Score=47.44  Aligned_cols=34  Identities=18%  Similarity=0.499  Sum_probs=29.0

Q ss_pred             eEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        111 IGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      +....|+++.|.|.+.|.|.|.++|+|++..+..
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~   37 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTP   37 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcC
Confidence            3467799999999999999999999999776543

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.16  E-value=7.5e-06  Score=47.48  Aligned_cols=71  Identities=21%  Similarity=0.279  Sum_probs=42.0

Q ss_pred             CeeEeCCCCCceEeec---CCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEe----ecCCcEEE
Q psy16421         49 PDILDYPTSSDIMVRE---GSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGA----HEGQQLVL  121 (151)
Q Consensus        49 p~~~~~~~~~~~~~~~---g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~g~~~~l  121 (151)
                      |.|...|  ....+.+   +..+.|.|.+.|.|.|.+.|++ ++..+....     ..+........+    ...+....
T Consensus         2 P~f~~~P--~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k-~~~~i~~~~-----~~~~~~~g~L~I~~~~~~~D~G~Y   73 (93)
T cd05849           2 PVFEEQP--IDTIYPEESTEGKVSVNCRARANPFPIYKWRK-NNLDIDLTN-----DRYSMVGGNLVINNPDKYKDAGRY   73 (93)
T ss_pred             CEEEECC--CCEEecCCccCCeEEEeCcCccCCCCEEEEEE-CCEEccCCC-----CeEEEECCEEEECcCCcCCCCEEE
Confidence            4455444  3333333   3479999999999999999999 555543211     111111111111    23688889


Q ss_pred             Eeeecc
Q psy16421        122 ECISEA  127 (151)
Q Consensus       122 ~C~~~g  127 (151)
                      .|.+..
T Consensus        74 ~C~A~N   79 (93)
T cd05849          74 VCIVSN   79 (93)
T ss_pred             EEEEEe
Confidence            999864

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.16  E-value=3.8e-06  Score=46.33  Aligned_cols=29  Identities=24%  Similarity=0.579  Sum_probs=25.6

Q ss_pred             CCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        116 GQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       116 g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      |+++.|.|.+.|.|.|.++|+|++..+..
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~   29 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTN   29 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEccc
Confidence            68899999999999999999999776543

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.15  E-value=1.6e-06  Score=47.32  Aligned_cols=27  Identities=26%  Similarity=0.470  Sum_probs=22.0

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccce
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRI   28 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~   28 (151)
                      |.+++.+|+|.|+|.|.|..|. .+..+
T Consensus        40 I~~~~~~D~G~Y~C~a~N~~G~-~~~~~   66 (69)
T cd05746          40 IRDVGVADQGRYECVARNTIGY-ASVSM   66 (69)
T ss_pred             ECcCChhhCEEEEEEEECCCCc-EEEEE
Confidence            5688999999999999999994 44443

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.15  E-value=2.6e-06  Score=47.17  Aligned_cols=25  Identities=12%  Similarity=0.250  Sum_probs=21.9

Q ss_pred             EEEEeeecccCCCeeEEEcCCceec
Q psy16421        119 LVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       119 ~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      +.|.|.+.|.|.|.++|+|++..+.
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~   25 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVD   25 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECc
Confidence            4799999999999999999976654

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.14  E-value=5.9e-06  Score=47.97  Aligned_cols=65  Identities=25%  Similarity=0.473  Sum_probs=42.9

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccC----CCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN----NTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      ....+..|+++.|.|.+.|.|.|.+.|++ +++.+.....    ......+.+.    .+...+.....|.+..
T Consensus        11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k-~g~~~~~~~~~~~~~~~~~~L~I~----~v~~~D~G~Y~C~a~N   79 (95)
T cd05730          11 VNATANLGQSVTLACDADGFPEPTMTWTK-DGEPIESGEEKYSFNEDGSEMTIL----DVDKLDEAEYTCIAEN   79 (95)
T ss_pred             cceEEeCCCCEEEEEeccEeCCCEEEEEE-CCEECcCCCCEEEEeCCCCEEEEC----CCChhhCEEEEEEEEc
Confidence            34577889999999999999999999999 5665543210    0001112221    2345677889998864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.13  E-value=3.8e-06  Score=47.14  Aligned_cols=35  Identities=23%  Similarity=0.330  Sum_probs=28.9

Q ss_pred             ceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        109 QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ....+.+|+.+.|.|.+.+. .+.+.|+|||..+..
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~   36 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGE   36 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCC
Confidence            45568899999999999996 568999999876644

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=98.13  E-value=9.5e-06  Score=47.77  Aligned_cols=69  Identities=20%  Similarity=0.376  Sum_probs=46.0

Q ss_pred             CceEeecCCeEEEEeeecC-CCCCeEEEEeCCeeeEecccCCCCCC------eeeeCCceeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAASG-SPPPSIMWRREGGEMITNSFNNTVPP------IVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g-~~~~~~~W~~~~~~~~~~~~~~~~~p------~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      ..+.+.+|+++.|.|.+.| .|+|.+.|+| |+.++..........      ..........+...+....+|.+..
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~K-dg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N   86 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTY-DNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASN   86 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEe-CCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEEC
Confidence            4577889999999999999 8999999999 777765322100000      0011122234567888899999864

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.13  E-value=9.4e-06  Score=46.96  Aligned_cols=37  Identities=19%  Similarity=0.393  Sum_probs=30.4

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCce
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGD  141 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~  141 (151)
                      +.+.+....+.+|+++.|.|.+.|.|. .+.|+++++.
T Consensus         3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~   39 (92)
T cd05866           3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGE   39 (92)
T ss_pred             EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCe
Confidence            345566778999999999999999998 8999985443

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=98.12  E-value=7.2e-06  Score=47.37  Aligned_cols=65  Identities=17%  Similarity=0.374  Sum_probs=43.1

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCC----C--CeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV----P--PIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~----~--p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      ..+.+.+|+++.|.|.+.|.|.|.+.|++ +++.+....+...    .  -.+.+.    .+...+.....|.+..
T Consensus         9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k-~g~~l~~~~~~~~~~~~~~~~~L~I~----~v~~~D~G~Y~C~a~N   79 (92)
T cd05737           9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLK-NDQALALSDHYNVKVEQGKYASLTIK----GVSSEDSGKYGIVVKN   79 (92)
T ss_pred             ceEEEeCCCcEEEEEEEEecCCCeEEEEE-CCEECccCCCEEEEEcCCCEEEEEEc----cCChhhCEEEEEEEEE
Confidence            45678899999999999999999999999 5666543221000    0  011111    2445777788898763

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.12  E-value=3.2e-06  Score=47.24  Aligned_cols=32  Identities=22%  Similarity=0.437  Sum_probs=24.6

Q ss_pred             CccccccCCeEEEEEEEcCCCCCC-ccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSV-SKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~-~~~~~l~v   32 (151)
                      |.+++++|+|.|.|.|.|..|... +..++|.|
T Consensus        42 I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v   74 (77)
T cd05760          42 LRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI   74 (77)
T ss_pred             EeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence            567899999999999999999532 34555554

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=98.12  E-value=3.6e-06  Score=46.76  Aligned_cols=26  Identities=23%  Similarity=0.520  Sum_probs=22.5

Q ss_pred             EEEEeeecccCCCeeEEEcCCceecc
Q psy16421        119 LVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       119 ~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      +.|.|.+.|.|.|.++|+|++..+..
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~   26 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTY   26 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCC
Confidence            47999999999999999999776643

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.12  E-value=2.3e-06  Score=48.58  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=26.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|+|.+.+..+...+..+.|+|
T Consensus        52 I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~   83 (83)
T cd05753          52 IPQATLSDSGSYHCSGIIGSYDYSSEPVSITV   83 (83)
T ss_pred             ECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence            56789999999999999999866666666653

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.11  E-value=5.5e-06  Score=47.51  Aligned_cols=29  Identities=17%  Similarity=0.371  Sum_probs=25.5

Q ss_pred             CCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        116 GQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       116 g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      |+.+.|.|.+.|.|++.+.|+|++..+..
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~   29 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINP   29 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCC
Confidence            78999999999999999999999765543

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.11  E-value=9.2e-06  Score=47.19  Aligned_cols=35  Identities=40%  Similarity=0.952  Sum_probs=30.1

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMIT   93 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~   93 (151)
                      .+..+.+|+.+.|.|.+.|.|.|.+.|++ +++.+.
T Consensus         7 ~~~~~~~g~~v~l~C~v~g~P~p~i~W~k-~g~~l~   41 (95)
T cd05722           7 SDIVAVRGGPVVLNCSAEGEPPPKIEWKK-DGVLLN   41 (95)
T ss_pred             CCeEEcCCCCEEEeeecccCCCCEEEEEE-CCeECc
Confidence            45677789999999999999999999999 666655

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.10  E-value=2.2e-06  Score=47.40  Aligned_cols=30  Identities=23%  Similarity=0.418  Sum_probs=23.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI   31 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~   31 (151)
                      |.+++.+|+|.|+|.|.|..| ..+..+.|+
T Consensus        44 i~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~   73 (74)
T cd05764          44 ILITTVKDTGSFTCIASNAAG-EATATVELH   73 (74)
T ss_pred             EEECChhhCEEEEEEEECCCC-eEEEEEEEE
Confidence            457889999999999999998 445555443

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.10  E-value=3.7e-06  Score=46.95  Aligned_cols=26  Identities=19%  Similarity=0.507  Sum_probs=22.6

Q ss_pred             EEEEeeecccCCCeeEEEcCCceecc
Q psy16421        119 LVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       119 ~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      +.|.|.+.|.|.|.+.|+|+|..+..
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~   26 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSD   26 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCC
Confidence            47999999999999999999876543

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.09  E-value=6.4e-06  Score=47.95  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=29.7

Q ss_pred             ceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421        109 QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      ....+.+|+++.|.|.+.|.|.|.+.|+|+++.+
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~   38 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQT   38 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccE
Confidence            4567899999999999999999999999987543

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=98.08  E-value=9.1e-06  Score=46.40  Aligned_cols=66  Identities=23%  Similarity=0.377  Sum_probs=43.7

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeC-----CceeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIP-----SQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~~~g~~~~l~C~~~g  127 (151)
                      ..+.+.+|+.+.|.|.+.|.|.|.+.|++ +++++.....   .-.+...     ..-..+...+.....|.+..
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k-~~~~i~~~~~---r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   73 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPAPTVTWSR-GDKAFTETEG---RVRVESYKDLSSFVIEGAEREDEGVYTITVTN   73 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCCCeEEEEE-CCEECccCCC---eEEEEEcCCeEEEEECCCccCcCEEEEEEEEe
Confidence            45678899999999999999999999999 6666653210   0011100     01112456777888998753

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>KOG3515|consensus

Probab=98.08  E-value=9.6e-06  Score=62.38  Aligned_cols=125  Identities=24%  Similarity=0.405  Sum_probs=74.0

Q ss_pred             cccccCCeEEEEEEEcCCCC--CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeee-cCCCC
Q psy16421          3 EVSREHMGAYLCIASNGVPP--SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA-SGSPP   79 (151)
Q Consensus         3 ~v~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~~~   79 (151)
                      ....+|.|+|+|.|.|....  .......+.+.            .....+............+|+.+.|.|.+ .|+|.
T Consensus       169 v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~------------~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~  236 (741)
T KOG3515|consen  169 VSRKADNGNYTCPANNRNSPGLSFAKQLTIIVE------------APCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPS  236 (741)
T ss_pred             EEEecCCceeEcccccccCccccccceeEeecc------------cccccceecchhhcCcccccceEEEEehhhcCCcc
Confidence            45567899999999885332  22233333332            11122212111122456689999999985 55899


Q ss_pred             CeEEEEeCCeeeEecccC--------------------------------C----------CCCC-eeeeCCceeEeecC
Q psy16421         80 PSIMWRREGGEMITNSFN--------------------------------N----------TVPP-IVKIPSQLIGAHEG  116 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~--------------------------------~----------~~~p-~~~~~~~~~~~~~g  116 (151)
                      +.+.|++ +.+.....+.                                +          ..++ ...+......+..|
T Consensus       237 ~~~~w~~-~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~tav~~~~~~~~Ist~~~~ls~g  315 (741)
T KOG3515|consen  237 QQQTWYK-DSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITAVQVKPTAVPISTSDSGLSSG  315 (741)
T ss_pred             hhhhhcc-ccccchhhhcccCCCCCCcccccccccccccchhhhhhccccCccccceeeecccccccccccCcccccccc
Confidence            9999999 4554443211                                1          0011 11122333447789


Q ss_pred             CcEEEEeee-cccCCCeeEEEcCCc
Q psy16421        117 QQLVLECIS-EAYPKSVNYWTREKG  140 (151)
Q Consensus       117 ~~~~l~C~~-~g~p~~~~~W~k~~~  140 (151)
                      ....+.|.. .++|.+.+.|+|+..
T Consensus       316 ~s~r~~c~~sss~p~~~i~w~~~~~  340 (741)
T KOG3515|consen  316 RSARSSCVSSSSKPPAHIAWYKDTK  340 (741)
T ss_pred             cccccceeccCCCCccceeeeccCc
Confidence            999999985 458888899999643

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.07  E-value=3.7e-06  Score=47.20  Aligned_cols=21  Identities=19%  Similarity=0.461  Sum_probs=19.2

Q ss_pred             CccccccCCeEEEEEEEcCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVP   21 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~   21 (151)
                      |.+++.+|+|.|+|.|.|..|
T Consensus        49 I~~~~~~DsG~Y~C~a~n~~g   69 (79)
T cd04973          49 IKDAVPRDSGLYACVTSSPSG   69 (79)
T ss_pred             ECCCChhhCEEEEEEEeCCCC
Confidence            578899999999999999887

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.07  E-value=4.4e-06  Score=47.71  Aligned_cols=32  Identities=28%  Similarity=0.545  Sum_probs=25.6

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |.+++.+|+|.|+|.|.|..+ .......|.|+
T Consensus        54 I~~~~~~DsG~Y~C~a~n~~~-~~~~~t~~~V~   85 (86)
T cd05862          54 IENVTLSDLGRYTCTASSGQM-IAKNSTIVIVH   85 (86)
T ss_pred             EecCCcccCEEEEEEEeecce-EecccEEEEEe
Confidence            568899999999999999887 55666666653

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.06  E-value=4.5e-06  Score=45.76  Aligned_cols=26  Identities=12%  Similarity=0.250  Sum_probs=22.5

Q ss_pred             EEEEeeecccCCCeeEEEcCCceecc
Q psy16421        119 LVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       119 ~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      +.|.|.+.|.|.|.++|+|||..+..
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~   26 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVL   26 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCC
Confidence            36899999999999999999877653

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.05  E-value=7e-06  Score=46.64  Aligned_cols=32  Identities=22%  Similarity=0.419  Sum_probs=24.0

Q ss_pred             CccccccCCeEEEEEEEcCCC-CCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVP-PSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|.|.|.|..+ ...+..+.|+|
T Consensus        50 I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V   82 (84)
T cd05861          50 FPHATVEDSGTYECAAHESTQDQKAFKKVNITV   82 (84)
T ss_pred             ECCCCcCCCEEEEEEEEECccCcceeEEEEEEE
Confidence            568999999999999998764 23455555555

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.05  E-value=3.3e-06  Score=47.44  Aligned_cols=29  Identities=21%  Similarity=0.418  Sum_probs=22.8

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIML   30 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l   30 (151)
                      |.+++.+|+|.|+|.+.|..| .....+.|
T Consensus        52 i~~v~~~D~G~Y~C~a~N~~G-~~~~~~~v   80 (82)
T cd05856          52 LKNLKPEDSGKYTCHVSNRAG-EINATYKV   80 (82)
T ss_pred             EccCChhhCEEEEEEEEcCCc-cEEEEEEE
Confidence            568899999999999999988 44444443

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.05  E-value=7.3e-06  Score=44.78  Aligned_cols=28  Identities=43%  Similarity=0.992  Sum_probs=24.0

Q ss_pred             CCeEEEEeeecCCCCCeEEEEeCCeeeEe
Q psy16421         65 GSNVSMRCAASGSPPPSIMWRREGGEMIT   93 (151)
Q Consensus        65 g~~~~l~C~~~g~~~~~~~W~~~~~~~~~   93 (151)
                      |+++.|.|.+.|.|.|.+.|++ +++.+.
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k-~g~~l~   28 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMK-GGEELT   28 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEE-CCEECC
Confidence            6789999999999999999999 555543

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.05  E-value=8.7e-06  Score=45.20  Aligned_cols=32  Identities=34%  Similarity=0.480  Sum_probs=25.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |.+++.+|.|.|+|.+.|..| .....+.|.|.
T Consensus        43 I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~V~   74 (76)
T cd05736          43 ISNVRYEDTGAYTCIAKNEAG-VDEDISSLFVE   74 (76)
T ss_pred             ECcCCcccCEEEEEEEEcCCC-CcceEEEEEEE
Confidence            568899999999999999998 45566666553

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.04  E-value=1.3e-05  Score=46.07  Aligned_cols=67  Identities=28%  Similarity=0.513  Sum_probs=42.2

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCC---CCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN---TVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +...+.+|+.+.|.|.+.|.|.|.+.|++ ++..+......   ......  ......+...+...+.|.+..
T Consensus         8 ~~~~v~~G~~v~l~C~~~G~P~p~v~W~~-~g~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~g~Y~C~A~N   77 (90)
T cd04972           8 NATVVYEGGTATIRCTAEGSPLPKVEWII-AGLIVIQTRTDTLETTVDIY--NLQLSNITSETQTTVTCTAEN   77 (90)
T ss_pred             cCEEEcCCCcEEEEEEEEEcCCCeEEEEE-CCEEccCCccEEEEecCCEE--EEEEecCCcccCEEEEEEEEC
Confidence            45568889999999999999999999999 55554321110   000000  011112445567889998763

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.03  E-value=0.00011  Score=42.94  Aligned_cols=69  Identities=16%  Similarity=0.382  Sum_probs=43.7

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCC-eeeEecccCCCCCCeeeeC-------CceeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREG-GEMITNSFNNTVPPIVKIP-------SQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~-~~~~~~~~~~~~~p~~~~~-------~~~~~~~~g~~~~l~C~~~g  127 (151)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++.+ +..+.... ......+...       .....+...+.....|.+..
T Consensus         9 ~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~-~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   85 (98)
T cd05870           9 KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGD-KSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAAS   85 (98)
T ss_pred             ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCC-cCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEec
Confidence            4678889999999999999999999999843 22222110 0000112111       11123456888999999864

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.03  E-value=1e-05  Score=44.65  Aligned_cols=29  Identities=28%  Similarity=0.636  Sum_probs=24.2

Q ss_pred             CCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        116 GQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       116 g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      |+.+.|.|.+.|.|.|.+.|+++++..+.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~   29 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLIS   29 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEec
Confidence            68899999999999999999975454443

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.02  E-value=5.9e-06  Score=45.39  Aligned_cols=26  Identities=19%  Similarity=0.296  Sum_probs=22.4

Q ss_pred             EEEEeeecccCCCeeEEEcCCceecc
Q psy16421        119 LVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       119 ~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      +.|.|.+.|.|+|.+.|+|+|..+..
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~   26 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISE   26 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCC
Confidence            46899999999999999999776643

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.02  E-value=5.2e-05  Score=42.93  Aligned_cols=66  Identities=20%  Similarity=0.371  Sum_probs=41.1

Q ss_pred             eEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCc---eeEeecCCcEEEEeeecc
Q psy16421         60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQ---LIGAHEGQQLVLECISEA  127 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~g~~~~l~C~~~g  127 (151)
                      ..+.+|+.+.|.|.+.|.|.|.+.|++ ++..+...... ....+.....   ...+...+.....|.+..
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k-~g~~l~~~~~~-~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N   72 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLK-NGKEFKQEHRI-GGYKVRNQHWSLIMESVVPSDKGNYTCVVEN   72 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEE-CCEECCCCCce-eeeEEeCCceEEEEccCCcccCEEEEEEEEe
Confidence            456789999999999999999999999 56665432210 0001110000   012345677888998764

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.02  E-value=4e-06  Score=45.74  Aligned_cols=26  Identities=12%  Similarity=0.449  Sum_probs=22.3

Q ss_pred             EEEEeeecccCCCeeEEEcCCceecc
Q psy16421        119 LVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       119 ~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      +.|.|.+.|.|.|.+.|+|+|..+..
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~   26 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTE   26 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCC
Confidence            47999999999999999999766543

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.02  E-value=1.1e-05  Score=45.89  Aligned_cols=65  Identities=25%  Similarity=0.458  Sum_probs=42.1

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCC-CCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV-PPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      ....+..|+.+.|.|.+.|.|.|.+.|++ +++.+....+... .-.+.+.    .+...+.....|.+..
T Consensus         7 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~k-~g~~~~~~~~~~~~~~~L~i~----~~~~~D~G~Y~C~a~N   72 (85)
T cd05728           7 SDTEADIGSSLRWECKASGNPRPAYRWLK-NGQPLASENRIEVEAGDLRIT----KLSLSDSGMYQCVAEN   72 (85)
T ss_pred             CccEEcCCCcEEEEEEeeEeCCCEEEEEE-CCEECCCCCeEEEeCCEEEEe----eCCHHHCEEEEEEEEC
Confidence            46778899999999999999999999999 5655432211000 0111111    2334566778888764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.01  E-value=1.9e-05  Score=45.61  Aligned_cols=63  Identities=13%  Similarity=0.274  Sum_probs=42.7

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC---CCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT---VPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +.+.+.+|+++.|.|.+.|. .|.+.|++ ++..+.... ..   ....+.+.    .+...+.....|.+..
T Consensus        11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~k-ng~~l~~~~-~~~~~~~~~L~I~----~v~~~D~G~Y~C~a~N   76 (91)
T cd05740          11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVN-NGSLLVPPR-LQLSNDNRTLTFN----NVTRSDTGHYQCEASN   76 (91)
T ss_pred             CccccccCCcEEEEEEeCCC-CCEEEEEE-CCEECCCCC-EEEeCCCCEEEEC----cCChhhCEEEEEEEEc
Confidence            56788999999999999999 99999999 555543211 00   00112221    2456788999999864

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.00  E-value=9.7e-06  Score=44.77  Aligned_cols=26  Identities=15%  Similarity=0.322  Sum_probs=22.8

Q ss_pred             cEEEEeeecccCCCeeEEEcCCceec
Q psy16421        118 QLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       118 ~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      .+.|.|.+.|.|.|.++|+|+|..+.
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~   26 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLK   26 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcC
Confidence            36899999999999999999977663

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=97.99  E-value=6e-06  Score=45.32  Aligned_cols=26  Identities=42%  Similarity=0.787  Sum_probs=22.2

Q ss_pred             EEEEeeecccCCCeeEEEcCCceecc
Q psy16421        119 LVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       119 ~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      +.|.|.+.|.|.|.+.|+|+++.+..
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~   26 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSP   26 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCC
Confidence            46999999999999999999775543

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=97.99  E-value=5.6e-06  Score=46.01  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=19.8

Q ss_pred             CccccccCCeEEEEEEEcCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP   22 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~   22 (151)
                      |.+++.+|+|.|+|.+.|..|.
T Consensus        48 I~~~~~~DsG~Y~C~a~N~~g~   69 (76)
T cd05895          48 ISKASLADNGEYKCMVSSKLGN   69 (76)
T ss_pred             ECcCCcccCEEEEEEEEeCCCc
Confidence            5788999999999999999883

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=97.98  E-value=2.2e-05  Score=44.88  Aligned_cols=37  Identities=11%  Similarity=0.179  Sum_probs=30.6

Q ss_pred             CceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      |....+..|+++.|.|.+.+ |.+.+.|++||..+..+
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~   39 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPE   39 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCC
Confidence            45677899999999999865 67899999998777554

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=97.98  E-value=8.1e-06  Score=44.98  Aligned_cols=25  Identities=16%  Similarity=0.239  Sum_probs=21.8

Q ss_pred             EEEeeecccCCCeeEEEcCCceecc
Q psy16421        120 VLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       120 ~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      .|.|.+.|.|+|.+.|+|+|..+..
T Consensus         2 ~l~c~v~g~P~P~v~W~kdg~~l~~   26 (72)
T cd07702           2 RLTPKVKAFPAPEVIWLKDGLPAAE   26 (72)
T ss_pred             eEEeeEEEcCCCeEEEEECCEECCC
Confidence            6899999999999999999876543

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=97.95  E-value=1.7e-05  Score=45.64  Aligned_cols=23  Identities=13%  Similarity=0.374  Sum_probs=21.6

Q ss_pred             CCcEEEEeeecccCCCeeEEEcC
Q psy16421        116 GQQLVLECISEAYPKSVNYWTRE  138 (151)
Q Consensus       116 g~~~~l~C~~~g~p~~~~~W~k~  138 (151)
                      |+++.|.|.+.|.|.|.|+|+|+
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~   23 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKH   23 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEe
Confidence            67899999999999999999995

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=97.95  E-value=9.4e-06  Score=45.07  Aligned_cols=27  Identities=22%  Similarity=0.428  Sum_probs=23.0

Q ss_pred             EEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        119 LVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       119 ~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      +.|.|.+.|.|.|.+.|+|++..+...
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~   27 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPK   27 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCC
Confidence            368999999999999999998776543

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=97.94  E-value=1e-05  Score=44.87  Aligned_cols=24  Identities=25%  Similarity=0.530  Sum_probs=20.9

Q ss_pred             EEEEeeecccCCCeeEEEcCCcee
Q psy16421        119 LVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       119 ~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      +.|.|.+.|.|.|.++|+|+|...
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~   24 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTD   24 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCcc
Confidence            468999999999999999987643

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=97.93  E-value=4.2e-05  Score=44.21  Aligned_cols=39  Identities=18%  Similarity=0.230  Sum_probs=30.7

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc-CCceec
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR-EKGDMI  143 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k-~~~~~~  143 (151)
                      +.+.+....+..|+++.|.|.+.|.|+ .++|++ ++..+.
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~   42 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLV   42 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEec
Confidence            345566788999999999999999974 999998 444443

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=97.93  E-value=3e-05  Score=45.23  Aligned_cols=75  Identities=21%  Similarity=0.322  Sum_probs=44.1

Q ss_pred             CeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCC----ce---eEeecCCcEEE
Q psy16421         49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPS----QL---IGAHEGQQLVL  121 (151)
Q Consensus        49 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~----~~---~~~~~g~~~~l  121 (151)
                      |.+...+  ....+..|+.+.|.|.+.|.|.|.+.|++ +++.+.... ......+....    ..   ..+...+....
T Consensus         3 p~i~~~~--~~~~~~~g~~v~l~C~~~G~P~P~v~W~~-~~~~~~~~~-~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y   78 (97)
T cd05869           3 PKITYVE--NQTAMELEEQITLTCEASGDPIPSITWRT-STRNISSEE-KTLDGHIVVRSHARVSSLTLKYIQYTDAGEY   78 (97)
T ss_pred             ceEEEcc--CceEEEcCCCEEEEEEeeEeCCCEEEEEE-CCccccCCc-cccCccEEEEcCccEEEEEEecCccCcCEEE
Confidence            5555444  33445558999999999999999999999 555443211 00011111110    01   12345778889


Q ss_pred             Eeeecc
Q psy16421        122 ECISEA  127 (151)
Q Consensus       122 ~C~~~g  127 (151)
                      .|.+..
T Consensus        79 ~C~A~N   84 (97)
T cd05869          79 LCTASN   84 (97)
T ss_pred             EEEEec
Confidence            999853

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=97.90  E-value=9.7e-06  Score=44.78  Aligned_cols=22  Identities=18%  Similarity=0.422  Sum_probs=19.8

Q ss_pred             CccccccCCeEEEEEEEcCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP   22 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~   22 (151)
                      |.+++.+|+|.|+|.|.|..|.
T Consensus        47 I~~~~~~D~G~Y~C~a~N~~G~   68 (75)
T cd05750          47 INKAKLADSGEYTCVVENILGN   68 (75)
T ss_pred             EccCCcccCeEEEEEEEEcCCc
Confidence            5678999999999999999984

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=97.90  E-value=1.5e-05  Score=45.84  Aligned_cols=27  Identities=19%  Similarity=0.654  Sum_probs=24.2

Q ss_pred             CCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421        116 GQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       116 g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      |+.+.|.|.+.|.|.|.+.|+|+|..+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~   27 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQN   27 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcc
Confidence            688999999999999999999987643

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=97.88  E-value=1.3e-05  Score=45.99  Aligned_cols=32  Identities=22%  Similarity=0.227  Sum_probs=25.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++++|+|.|.|.+.+..+......++|.|
T Consensus        55 I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V   86 (89)
T cd04979          55 IRSVSPADAGVYTCQSVEHGFKQTLATYSLNV   86 (89)
T ss_pred             EccCCHHHCEEEEEEEecCccceeEeEEEEEE
Confidence            57899999999999999876655666666665

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=97.88  E-value=0.0002  Score=41.47  Aligned_cols=68  Identities=18%  Similarity=0.358  Sum_probs=42.1

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCC-------ceeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPS-------QLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~-------~~~~~~~g~~~~l~C~~~g  127 (151)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..... ...-.+....       ....+...+.....|.+..
T Consensus         9 ~~~~~~~g~~v~l~C~~~g~p~p~v~W~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   83 (96)
T cd05732           9 ENQTAVELEQITLTCEAEGDPIPEITWRR-ATRNFSEGDK-SLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASN   83 (96)
T ss_pred             CceeEecCCcEEEEEEEeEcCCCcEEEEE-CCcccCCCCc-cccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEe
Confidence            35678899999999999999999999999 4444332110 0000111110       0112345778889999764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=97.88  E-value=2.8e-05  Score=44.66  Aligned_cols=23  Identities=13%  Similarity=0.327  Sum_probs=21.4

Q ss_pred             CCcEEEEeeecccCCCeeEEEcC
Q psy16421        116 GQQLVLECISEAYPKSVNYWTRE  138 (151)
Q Consensus       116 g~~~~l~C~~~g~p~~~~~W~k~  138 (151)
                      |+++.|.|.+.|.|.|.++|+|+
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~   23 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKH   23 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEe
Confidence            68899999999999999999984

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.88  E-value=2.1e-05  Score=46.13  Aligned_cols=32  Identities=19%  Similarity=0.330  Sum_probs=24.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|+|.+.+......+..+.|.|
T Consensus        67 i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          67 LSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             EcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            57899999999999999943325666666655

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.87  E-value=9.5e-05  Score=43.02  Aligned_cols=73  Identities=12%  Similarity=0.215  Sum_probs=46.5

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccC-CCCCCeeee--------CCceeEeecCCcEEEEeeeccc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN-NTVPPIVKI--------PSQLIGAHEGQQLVLECISEAY  128 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~-~~~~p~~~~--------~~~~~~~~~g~~~~l~C~~~g~  128 (151)
                      ++..+.+|+++.|.|.+.+.|.+.+.|++.+++.+..... .....++..        ...-..+...+.....|.+...
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~   84 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM   84 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence            5678899999999999999999999999955433221110 001111111        0111235678888999998775


Q ss_pred             CC
Q psy16421        129 PK  130 (151)
Q Consensus       129 p~  130 (151)
                      +.
T Consensus        85 ~~   86 (95)
T cd05882          85 PV   86 (95)
T ss_pred             cc
Confidence            53

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=97.86  E-value=1.7e-05  Score=44.47  Aligned_cols=26  Identities=15%  Similarity=0.250  Sum_probs=21.9

Q ss_pred             EEEeeecccCCCeeEEEcCCceeccC
Q psy16421        120 VLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       120 ~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      .+.|.+.|.|.|.++|+|||..+..+
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~   27 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNES   27 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCC
Confidence            36799999999999999998777543

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=97.86  E-value=9.1e-05  Score=41.30  Aligned_cols=25  Identities=40%  Similarity=1.022  Sum_probs=21.2

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeeEe
Q psy16421         68 VSMRCAASGSPPPSIMWRREGGEMIT   93 (151)
Q Consensus        68 ~~l~C~~~g~~~~~~~W~~~~~~~~~   93 (151)
                      +.|.|.+.|+|.|.+.|++ ++.++.
T Consensus         1 ~~l~C~a~G~P~P~i~W~k-~g~~l~   25 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTR-NGTHFD   25 (77)
T ss_pred             CEEEeeCcccCCCeEEEEE-CCeECC
Confidence            4789999999999999999 566653

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.85  E-value=2.4e-05  Score=45.26  Aligned_cols=28  Identities=18%  Similarity=0.323  Sum_probs=21.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIM   29 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~   29 (151)
                      |.+++.+|+|.|+|.+.|..+ .....++
T Consensus        56 I~~v~~~DsG~YtC~~~n~~~-~~~~~~t   83 (92)
T cd05757          56 IQNVTEEDAGNYTCKLTFTHN-GKQYNVT   83 (92)
T ss_pred             EeeCChhhCEEEEEEEEecCC-CEEEEEE
Confidence            578999999999999999877 3333333

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=97.85  E-value=3.3e-05  Score=44.26  Aligned_cols=35  Identities=20%  Similarity=0.453  Sum_probs=29.3

Q ss_pred             CceeEeecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      +..+.+.+|+++.|.|.+.+ |.+.+.|+|++..+.
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~   37 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQ   37 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccc
Confidence            44567889999999999987 888999999976554

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=97.83  E-value=6.3e-05  Score=41.71  Aligned_cols=40  Identities=18%  Similarity=0.433  Sum_probs=31.6

Q ss_pred             CeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421        102 PIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      |.|...+  ..+.+|+++.|.|.+.+.|.+.+.|++++..+.
T Consensus         2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~   41 (80)
T PF13895_consen    2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPIN   41 (80)
T ss_dssp             -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEE
T ss_pred             cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeee
Confidence            4455444  458899999999999999999999999876554

...

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=97.83  E-value=2.1e-05  Score=44.41  Aligned_cols=27  Identities=11%  Similarity=0.212  Sum_probs=22.7

Q ss_pred             EEEeeecccCCCeeEEEcCCceeccCC
Q psy16421        120 VLECISEAYPKSVNYWTREKGDMIANG  146 (151)
Q Consensus       120 ~l~C~~~g~p~~~~~W~k~~~~~~~~~  146 (151)
                      .+.|.+.|.|.|.++|+|||..+..+.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~   28 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESD   28 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCC
Confidence            368999999999999999987776543

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=97.83  E-value=0.00045  Score=39.67  Aligned_cols=58  Identities=22%  Similarity=0.444  Sum_probs=35.7

Q ss_pred             CCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeE---ee-cCCcEEEEeeecc
Q psy16421         65 GSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIG---AH-EGQQLVLECISEA  127 (151)
Q Consensus        65 g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~-~g~~~~l~C~~~g  127 (151)
                      +..+.|.|.+.|.|.|.+.|++ +++.+.....    ..+........   +. ..+.....|.+..
T Consensus        19 ~~~~~l~C~~~g~p~p~i~W~k-~~~~l~~~~~----~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N   80 (91)
T cd04967          19 EGKVSLNCRARGSPPPTYRWLM-NGTEIDDEPD----SRYSLVGGNLVISNPSKAKDAGRYQCLASN   80 (91)
T ss_pred             CCEEEEEEeeeEcCCCEEEEEE-CCEECCCCCC----CCEEEECCEEEEecCCccCCCEEEEEEEEc
Confidence            4679999999999999999999 5665532111    11111111111   12 2567789999863

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=97.82  E-value=3.7e-05  Score=45.29  Aligned_cols=68  Identities=15%  Similarity=0.215  Sum_probs=42.8

Q ss_pred             ceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCC-CC-CC-----eeeeCCceeEeecCCcEEEEeeecc
Q psy16421         59 DIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN-TV-PP-----IVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~-~~-~p-----~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      ...+..|+.+.|.|.+.|.|.|.+.|+| +++++...... .. .-     ..........+...+....+|.+..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~k-dg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N   86 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLK-DNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQN   86 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEE-CCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEc
Confidence            3456778999999999999999999999 67776543210 00 00     0000111123456677778888764

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=97.82  E-value=5.1e-05  Score=42.74  Aligned_cols=33  Identities=15%  Similarity=0.398  Sum_probs=28.7

Q ss_pred             eEeecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421        111 IGAHEGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      +.+..|+++.|.|.+.+.|.+.+.|+|++..+.
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~   36 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFK   36 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECc
Confidence            456789999999999999999999999876654

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=97.81  E-value=0.00012  Score=40.76  Aligned_cols=24  Identities=33%  Similarity=0.973  Sum_probs=20.7

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeeE
Q psy16421         68 VSMRCAASGSPPPSIMWRREGGEMI   92 (151)
Q Consensus        68 ~~l~C~~~g~~~~~~~W~~~~~~~~   92 (151)
                      +.|.|.+.|.|.|.+.|++ ++..+
T Consensus         1 ~~l~C~~~G~P~P~v~W~k-~g~~~   24 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTR-NGKFF   24 (77)
T ss_pred             CEEEEeccccCCCEEEEEE-CCEEc
Confidence            4689999999999999999 56654

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=97.80  E-value=2.1e-05  Score=43.33  Aligned_cols=21  Identities=19%  Similarity=0.297  Sum_probs=18.7

Q ss_pred             CccccccCCeEEEEEEEcCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVP   21 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~   21 (151)
                      |.+++.+|+|.|+|.|.|...
T Consensus        40 I~~v~~~D~G~YtC~a~~~~~   60 (72)
T cd07702          40 IKDVTEEDAGIYTILLGIKQY   60 (72)
T ss_pred             ECcCCHHHCEEEEEEEEcccc
Confidence            578999999999999999854

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.79  E-value=5.5e-05  Score=43.99  Aligned_cols=32  Identities=19%  Similarity=0.326  Sum_probs=27.8

Q ss_pred             CceeEeecCCcEEEEeeecccCCCeeEEEcCC
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKSVNYWTREK  139 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~  139 (151)
                      ...+.+.+|+++.|.|.+.+.|.+.+.|++.+
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~   35 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPA   35 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCC
Confidence            34577899999999999999999999998743

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.79  E-value=0.00012  Score=40.77  Aligned_cols=25  Identities=36%  Similarity=1.039  Sum_probs=21.2

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeeEe
Q psy16421         68 VSMRCAASGSPPPSIMWRREGGEMIT   93 (151)
Q Consensus        68 ~~l~C~~~g~~~~~~~W~~~~~~~~~   93 (151)
                      +.|.|.+.|.|.|.+.|++ ++..+.
T Consensus         1 i~l~C~~~G~P~P~v~W~k-~g~~l~   25 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTR-NGTHFD   25 (77)
T ss_pred             CEEEeeCcccCCCeEEEEE-CCeECC
Confidence            4789999999999999999 666654

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=97.79  E-value=2.6e-05  Score=43.69  Aligned_cols=24  Identities=17%  Similarity=0.437  Sum_probs=22.1

Q ss_pred             CCcEEEEeeecccCCCeeEEEcCC
Q psy16421        116 GQQLVLECISEAYPKSVNYWTREK  139 (151)
Q Consensus       116 g~~~~l~C~~~g~p~~~~~W~k~~  139 (151)
                      |+++.|.|.+.|.|.|.++|+|++
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~   24 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQV   24 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecC
Confidence            788999999999999999999973

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=97.78  E-value=2.7e-05  Score=42.44  Aligned_cols=25  Identities=36%  Similarity=0.768  Sum_probs=21.7

Q ss_pred             EEEEeeecccCCCeeEEEcCCceec
Q psy16421        119 LVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       119 ~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      +.|.|.+.|.|.|.+.|+|++..+.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~   25 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELP   25 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECC
Confidence            4689999999999999999876554

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=97.78  E-value=0.00011  Score=42.85  Aligned_cols=35  Identities=20%  Similarity=0.459  Sum_probs=29.0

Q ss_pred             CceEeecCCeEEEEeeecCCCCC-eEEEEeCCeeeEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPP-SIMWRREGGEMIT   93 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~-~~~W~~~~~~~~~   93 (151)
                      ....+.+|+.+.|.|.+.|.|.| .+.|++ +++.+.
T Consensus         9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~-~~~~i~   44 (98)
T cd05758           9 ATQYAILGDKGRVECFIFSTPPPDRIVWTW-KENELE   44 (98)
T ss_pred             CcEEEeCCCcEEEEEEEcccCCCCEeEEEE-CCEEcc
Confidence            34567889999999999999998 699999 566554

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=97.77  E-value=2.7e-05  Score=42.36  Aligned_cols=24  Identities=21%  Similarity=0.630  Sum_probs=21.0

Q ss_pred             EEEEeeecccCCCeeEEEcCCcee
Q psy16421        119 LVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       119 ~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      +.|.|.+.|.|.|.+.|+|+++.+
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~   24 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGEL   24 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccC
Confidence            479999999999999999986654

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=97.77  E-value=3.2e-05  Score=42.62  Aligned_cols=26  Identities=27%  Similarity=0.603  Sum_probs=22.2

Q ss_pred             EEEEeeecc-cCCCeeEEEcCCceecc
Q psy16421        119 LVLECISEA-YPKSVNYWTREKGDMIA  144 (151)
Q Consensus       119 ~~l~C~~~g-~p~~~~~W~k~~~~~~~  144 (151)
                      +.|.|.+.| .|.|.+.|+|+|..+..
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~   27 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNR   27 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccc
Confidence            369999999 99999999999876654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=97.76  E-value=8.1e-05  Score=42.21  Aligned_cols=36  Identities=19%  Similarity=0.408  Sum_probs=30.0

Q ss_pred             CCceeEeecCCcEEEEeeecc-cCCCeeEEEcCCcee
Q psy16421        107 PSQLIGAHEGQQLVLECISEA-YPKSVNYWTREKGDM  142 (151)
Q Consensus       107 ~~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~k~~~~~  142 (151)
                      .+....+.+|+++.|.|.+.+ .|.+.+.|++++..+
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~   43 (85)
T cd05754           7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGL   43 (85)
T ss_pred             CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcC
Confidence            466778899999999999975 788899999987543

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=97.76  E-value=7.8e-05  Score=43.06  Aligned_cols=65  Identities=17%  Similarity=0.330  Sum_probs=41.8

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC----CCC--eeeeCCceeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT----VPP--IVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~----~~p--~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      ..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....+..    ...  .+.+    ..+...+.....|.+..
T Consensus         9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~-~~~~~~~~~~~~~~~~~~~~~L~I----~~~~~~D~G~Y~C~a~N   79 (92)
T cd05891           9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKN-DQDIELSEHYSVKLEQGKYASLTI----KGVTSEDSGKYSINVKN   79 (92)
T ss_pred             CcEEEcCCCEEEEEEEEEEeCCCeEEEEEC-CEECCCCCCEEEEEcCCCEEEEEE----CCCChhhCEEEEEEEEe
Confidence            467788999999999999999999999994 44433221100    000  1111    12345777888898763

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.75  E-value=5.9e-05  Score=43.80  Aligned_cols=38  Identities=21%  Similarity=0.336  Sum_probs=31.6

Q ss_pred             CceeEeecCCcEEEEee-ecccCCCeeEEEcCCceeccC
Q psy16421        108 SQLIGAHEGQQLVLECI-SEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~-~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      ...+.+.+|+.+.|.|. ..|.|.|.+.|++++...+..
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~   48 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ   48 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc
Confidence            45678899999999997 699999999999886555443

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=97.70  E-value=5.4e-05  Score=42.51  Aligned_cols=27  Identities=22%  Similarity=0.608  Sum_probs=22.6

Q ss_pred             cEEEEeeec-ccCCCeeEEEcCCceecc
Q psy16421        118 QLVLECISE-AYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       118 ~~~l~C~~~-g~p~~~~~W~k~~~~~~~  144 (151)
                      .++|+|.+. |+|++.++|+|++.++..
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~   28 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKG   28 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCC
Confidence            378999976 589999999999887754

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.69  E-value=5.3e-05  Score=43.99  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=28.2

Q ss_pred             eeEeecCCcEEEEeeecc-----cCCCeeEEEcCCcee
Q psy16421        110 LIGAHEGQQLVLECISEA-----YPKSVNYWTREKGDM  142 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g-----~p~~~~~W~k~~~~~  142 (151)
                      ...+.+|+.+.|.|.+.|     .|.|.++|+|++..+
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~   45 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKT   45 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCC
Confidence            455779999999999999     688999999997653

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.68  E-value=6.2e-05  Score=43.86  Aligned_cols=32  Identities=19%  Similarity=0.308  Sum_probs=24.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|+|.+.+...........|.|
T Consensus        64 i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          64 LENVGFSDIGVYICKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             EeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence            57899999999999987665446666666554

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=97.66  E-value=3.4e-05  Score=43.79  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=19.7

Q ss_pred             CccccccCCeEEEEEEEcCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP   22 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~   22 (151)
                      |.+++.+|+|.|.|.+.|..|.
T Consensus        56 I~~v~~~DsG~Y~C~a~n~~g~   77 (85)
T cd05754          56 IRNVQLSDAGTYVCTGSNMLDT   77 (85)
T ss_pred             ECCCCHHHCEEEEEEEeccCCe
Confidence            5688999999999999999883

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=97.66  E-value=0.00013  Score=43.53  Aligned_cols=29  Identities=24%  Similarity=0.592  Sum_probs=24.9

Q ss_pred             cCCeEEEEeeecCCCCCeEEEEeCCeeeEe
Q psy16421         64 EGSNVSMRCAASGSPPPSIMWRREGGEMIT   93 (151)
Q Consensus        64 ~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~   93 (151)
                      .|..+.|.|.+.|.|.+.+.|++ ++..+.
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k-~g~~l~   50 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAK-NGVPLD   50 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEE-CCEECC
Confidence            46789999999999999999999 666654

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=97.65  E-value=7.6e-05  Score=42.45  Aligned_cols=27  Identities=19%  Similarity=0.371  Sum_probs=22.7

Q ss_pred             CcEEEEeeecccCCC--eeEEEcCCceec
Q psy16421        117 QQLVLECISEAYPKS--VNYWTREKGDMI  143 (151)
Q Consensus       117 ~~~~l~C~~~g~p~~--~~~W~k~~~~~~  143 (151)
                      +++.|.|.+.|.|.|  .++|+|||..+.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~   29 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPID   29 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEcc
Confidence            478999999999987  489999977653

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=97.64  E-value=0.00091  Score=38.22  Aligned_cols=72  Identities=17%  Similarity=0.303  Sum_probs=48.3

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCcee---EeecCCcEEEEeeecccCCC-ee
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLI---GAHEGQQLVLECISEAYPKS-VN  133 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~g~~~~l~C~~~g~p~~-~~  133 (151)
                      ....+..|+++.|.|.+.+ +.+.+.|++ +++++....     ..+.......   .+...+.....|.+...-+. .|
T Consensus         4 ~~~~v~~G~~v~L~C~~~~-~~~~i~W~~-ng~~i~~~~-----~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~~~~~~   76 (87)
T cd05873           4 RQRTFKLGNNAELKCSPKS-NLARVVWKF-DGKVLTPES-----AKYLLYRDGLLIFNASEADAGRYQCLSVEKSKAKLF   76 (87)
T ss_pred             ceEEEECCCCEEEEEECCC-CCCeEEEEE-CCEECCCCC-----ceEEEECCcEEEeCCCHHHCEEEEEEEEecccCcee
Confidence            5678889999999999865 678999999 677765321     1222221111   25578899999998765333 36


Q ss_pred             EEE
Q psy16421        134 YWT  136 (151)
Q Consensus       134 ~W~  136 (151)
                      +|.
T Consensus        77 ~~~   79 (87)
T cd05873          77 TQT   79 (87)
T ss_pred             EeE
Confidence            654

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.64  E-value=0.00015  Score=42.53  Aligned_cols=41  Identities=15%  Similarity=0.168  Sum_probs=30.7

Q ss_pred             eeeeCCceeEeecCCcEEEEeeecc-cCCCe--eEEEcCCceec
Q psy16421        103 IVKIPSQLIGAHEGQQLVLECISEA-YPKSV--NYWTREKGDMI  143 (151)
Q Consensus       103 ~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~--~~W~k~~~~~~  143 (151)
                      .+.+.+....+.+|+.++|.|.+.| .|.+.  +.|+|++..+.
T Consensus         3 ~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~   46 (100)
T cd05755           3 SVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLS   46 (100)
T ss_pred             eEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcc
Confidence            3444444455789999999999986 77776  79999866554

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=97.63  E-value=4.3e-05  Score=43.06  Aligned_cols=29  Identities=21%  Similarity=0.422  Sum_probs=22.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIML   30 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l   30 (151)
                      |.++..+|+|.|.|.+.|..|. ....+.|
T Consensus        55 i~~~~~~d~g~Y~C~~~n~~g~-~~~~~~l   83 (85)
T cd05729          55 LESVVPSDSGKYTCIVENKYGS-INHTYKV   83 (85)
T ss_pred             EeECCcccCEEEEEEEEECCce-EEEEEEE
Confidence            4578899999999999999883 4444444

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=97.61  E-value=0.0001  Score=41.15  Aligned_cols=58  Identities=26%  Similarity=0.451  Sum_probs=35.7

Q ss_pred             CCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCC-----CCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         65 GSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV-----PPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        65 g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~-----~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      |+++.|.|.+.|.|.|.+.|++ ++..+....+...     .-.+.+.    .+...+.....|.+..
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~-~~~~~~~~~~~~~~~~~~~~~L~I~----~v~~~D~G~Y~C~a~N   63 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRL-NWGHVPDSARVSITSEGGYGTLTIR----DVKESDQGAYTCEAIN   63 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEE-CCeECCCCCCEEEEECCCEEEEEEC----CCChHHCEEEEEEEEe
Confidence            6889999999999999999999 4444332111000     0011111    2345667788998753

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=97.61  E-value=5.1e-05  Score=44.11  Aligned_cols=21  Identities=24%  Similarity=0.327  Sum_probs=18.8

Q ss_pred             CccccccCCeEEEEEEEcCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVP   21 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~   21 (151)
                      |.+|..+|+|.|+|++.+..+
T Consensus        59 I~~v~~~D~G~YtC~~~~~~~   79 (95)
T cd05897          59 IIDVSLNDSGYYTCKLQFTHE   79 (95)
T ss_pred             EEEcChhhCEEEEEEEEEeeC
Confidence            568999999999999999866

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=97.60  E-value=5.4e-05  Score=43.51  Aligned_cols=30  Identities=13%  Similarity=0.261  Sum_probs=22.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIML   30 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l   30 (151)
                      |.+++.+|+|.|.|.+....+......+.|
T Consensus        61 I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l   90 (92)
T cd05741          61 IQNLTKEDSGTYTLQIISTNGVTENAKFFL   90 (92)
T ss_pred             EccCCchhcEEEEEEEEcCCCcEEEEEEEE
Confidence            679999999999999988876444333333

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=97.58  E-value=6.6e-05  Score=43.31  Aligned_cols=31  Identities=23%  Similarity=0.442  Sum_probs=21.9

Q ss_pred             CccccccCCeEEEEEEEc-CCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASN-GVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~-~~~~~~~~~~~l~v   32 (151)
                      |.+++++|+|.|.|.+.+ ..+ .....++|+|
T Consensus        57 I~~~~~~DsG~Y~C~a~~~~~~-~~~~~~~l~v   88 (91)
T cd05871          57 LRSLQRSDAGVYTCTAVEHSFS-QTLAKYTLHV   88 (91)
T ss_pred             EeeCChhHCEEEEEEEEccCCe-EEEEEEEEEE
Confidence            578999999999999985 433 3333455554

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.57  E-value=0.00017  Score=40.87  Aligned_cols=35  Identities=23%  Similarity=0.194  Sum_probs=27.8

Q ss_pred             ceeEeecCCcEEEEeeecc-cCCCeeEEEcCCceec
Q psy16421        109 QLIGAHEGQQLVLECISEA-YPKSVNYWTREKGDMI  143 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g-~p~~~~~W~k~~~~~~  143 (151)
                      ....+.+|+++.|.|.+.+ .+.+.+.|+|+|..+.
T Consensus         7 p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~   42 (83)
T cd05753           7 PSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKK   42 (83)
T ss_pred             CcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcc
Confidence            3446899999999999864 5667899999986553

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=97.57  E-value=7.8e-05  Score=43.52  Aligned_cols=32  Identities=16%  Similarity=0.297  Sum_probs=25.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |++++.+|+|.|.|.+.+..+......+.|.|
T Consensus        65 I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          65 ISNLKMEDAGSYRAEINTKNGVTITKEFTLHI   96 (97)
T ss_pred             ECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence            67899999999999999887755555555554

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=97.56  E-value=0.00016  Score=41.01  Aligned_cols=27  Identities=15%  Similarity=0.310  Sum_probs=22.7

Q ss_pred             CcEEEEeeecccCCC--eeEEEcCCceec
Q psy16421        117 QQLVLECISEAYPKS--VNYWTREKGDMI  143 (151)
Q Consensus       117 ~~~~l~C~~~g~p~~--~~~W~k~~~~~~  143 (151)
                      +++.|.|.+.|.|.|  .+.|+|+|..+.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~   29 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPID   29 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEee
Confidence            468999999999987  579999987664

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=97.56  E-value=0.00013  Score=38.14  Aligned_cols=29  Identities=28%  Similarity=0.519  Sum_probs=25.0

Q ss_pred             cCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421        115 EGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       115 ~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      +|+++.|.|.+.+.|.+.+.|++++..+.
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~   29 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP   29 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC
Confidence            48899999999999999999999876544

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.53  E-value=0.00013  Score=42.47  Aligned_cols=32  Identities=22%  Similarity=0.297  Sum_probs=22.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|.|.+.+.........+.|.|
T Consensus        66 I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          66 ISNLRLEDEGNYICEFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence            67899999999999987643224445555443

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=97.52  E-value=0.00027  Score=41.03  Aligned_cols=31  Identities=13%  Similarity=0.222  Sum_probs=26.8

Q ss_pred             eEeecCCcEEEEeeecccCCCeeEEEcCCce
Q psy16421        111 IGAHEGQQLVLECISEAYPKSVNYWTREKGD  141 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~  141 (151)
                      +.+.+|++++|.|.+.+.+.+.+.|+++++.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k   32 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQI   32 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcE
Confidence            4578999999999999999999999977644

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=97.52  E-value=7.6e-05  Score=41.72  Aligned_cols=22  Identities=36%  Similarity=0.875  Sum_probs=19.5

Q ss_pred             EEEEeeecccCCCeeEEEcCCc
Q psy16421        119 LVLECISEAYPKSVNYWTREKG  140 (151)
Q Consensus       119 ~~l~C~~~g~p~~~~~W~k~~~  140 (151)
                      +.|.|.+.|.|.|.++|+|+++
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~   22 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKG   22 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCC
Confidence            4799999999999999999644

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>KOG3515|consensus

Probab=97.51  E-value=0.00028  Score=54.68  Aligned_cols=121  Identities=20%  Similarity=0.315  Sum_probs=73.5

Q ss_pred             CeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEee--ecCCCCCeEEEEe
Q psy16421          9 MGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCA--ASGSPPPSIMWRR   86 (151)
Q Consensus         9 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~--~~g~~~~~~~W~~   86 (151)
                      -+.|.|++.|..+......+.+.+             ..+|.-....  .......+..+.+.|.  ..+.|.+.++|+.
T Consensus        71 ~~~~~c~a~ns~~~~~~~~~~l~v-------------~~~pa~~~~~--~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~  135 (741)
T KOG3515|consen   71 VAELNCRAFNSVGMPSRCPMILDV-------------DYPPACLPEL--GEIFQVDKGVVQIICSAKVAGRPNPNLRWGF  135 (741)
T ss_pred             hhhhhhhhcccccCceecceeecc-------------ccCccccccc--cchhhhcCCeEEEEEeecCCCCCCcceeeee
Confidence            469999999986654444444433             3444333322  2334456788999995  4668889999998


Q ss_pred             CCeeeEecccC-------------------------------------C-------------------CCCCeeeeCCce
Q psy16421         87 EGGEMITNSFN-------------------------------------N-------------------TVPPIVKIPSQL  110 (151)
Q Consensus        87 ~~~~~~~~~~~-------------------------------------~-------------------~~~p~~~~~~~~  110 (151)
                      ++.........                                     .                   .....+......
T Consensus       136 n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~  215 (741)
T KOG3515|consen  136 NNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQ  215 (741)
T ss_pred             ccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhc
Confidence            44333322210                                     0                   001111112233


Q ss_pred             eEeecCCcEEEEeeec-ccCCCeeEEEcCCceecc
Q psy16421        111 IGAHEGQQLVLECISE-AYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~-g~p~~~~~W~k~~~~~~~  144 (151)
                      ....+|+.+.|.|.++ |.|.+.++|+++......
T Consensus       216 qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~  250 (741)
T KOG3515|consen  216 QSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSE  250 (741)
T ss_pred             CcccccceEEEEehhhcCCcchhhhhccccccchh
Confidence            4567899999999876 588899999997654443

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=97.50  E-value=0.00073  Score=37.95  Aligned_cols=59  Identities=14%  Similarity=0.361  Sum_probs=37.0

Q ss_pred             EEEEeee-cCCCCCeEEEEeCCeeeEecccC-CCCCCeeeeC--CceeEeecCCcEEEEeeecc
Q psy16421         68 VSMRCAA-SGSPPPSIMWRREGGEMITNSFN-NTVPPIVKIP--SQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        68 ~~l~C~~-~g~~~~~~~W~~~~~~~~~~~~~-~~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +.|.|.. .++|.+.+.||+ |++++..... ......+...  .......+.+...+.|++..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k-~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n   64 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYR-DRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASH   64 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEE-CCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEC
Confidence            6899995 669999999999 6777653211 0111112211  12223457888999999875

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.47  E-value=0.00032  Score=40.77  Aligned_cols=73  Identities=11%  Similarity=0.208  Sum_probs=46.6

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccC-CCCCCeeeeC--------CceeEeecCCcEEEEeeeccc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN-NTVPPIVKIP--------SQLIGAHEGQQLVLECISEAY  128 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~-~~~~p~~~~~--------~~~~~~~~g~~~~l~C~~~g~  128 (151)
                      +.+.+.+|+++.|.|.+.+.|.+.+.|++.+++.+-.... .....++...        ..-..+...+.....|.+...
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~   84 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM   84 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence            5688999999999999999999999999754433321110 1112222210        011235678889999998775


Q ss_pred             CC
Q psy16421        129 PK  130 (151)
Q Consensus       129 p~  130 (151)
                      |.
T Consensus        85 ~~   86 (95)
T cd07701          85 PV   86 (95)
T ss_pred             cC
Confidence            43

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=97.46  E-value=0.00015  Score=41.05  Aligned_cols=27  Identities=26%  Similarity=0.326  Sum_probs=23.2

Q ss_pred             CCcEEEEeeeccc--CCCeeEEEcCCcee
Q psy16421        116 GQQLVLECISEAY--PKSVNYWTREKGDM  142 (151)
Q Consensus       116 g~~~~l~C~~~g~--p~~~~~W~k~~~~~  142 (151)
                      |+++.|.|.+.|.  |.|.+.|.+++..+
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~   29 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKR   29 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCccc
Confidence            7899999999999  88899999876543

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.46  E-value=0.00025  Score=40.52  Aligned_cols=27  Identities=30%  Similarity=0.698  Sum_probs=22.4

Q ss_pred             CCcEEEEeeec-ccCCCeeEEEcCCcee
Q psy16421        116 GQQLVLECISE-AYPKSVNYWTREKGDM  142 (151)
Q Consensus       116 g~~~~l~C~~~-g~p~~~~~W~k~~~~~  142 (151)
                      |+.+.+.|.+. |+|.|.++|+.++..+
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~   41 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPV   41 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCce
Confidence            78999999865 6999999999987665

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>PHA02633 hypothetical protein; Provisional

Probab=97.45  E-value=0.00016  Score=37.97  Aligned_cols=32  Identities=22%  Similarity=0.374  Sum_probs=24.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |-++..+|+|.|.|..+|..- ....++.|+|.
T Consensus        22 ilpa~~sDSGiYiC~~rn~t~-c~~~si~l~V~   53 (63)
T PHA02633         22 ILNPTQSDSGIYMCITKNETY-SDMMKFDLCIC   53 (63)
T ss_pred             EeccccccCcEEEEEEcCCCe-eEEEEEEEEEe
Confidence            346788999999999998765 56666777765

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=97.45  E-value=0.00019  Score=40.41  Aligned_cols=25  Identities=20%  Similarity=0.412  Sum_probs=21.0

Q ss_pred             cEEEEeeecc-cCCCeeEEEcCCcee
Q psy16421        118 QLVLECISEA-YPKSVNYWTREKGDM  142 (151)
Q Consensus       118 ~~~l~C~~~g-~p~~~~~W~k~~~~~  142 (151)
                      .+.|.|.+.| +|.+.++|+|+|..+
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l   26 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVL   26 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEc
Confidence            3689999987 788899999997654

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.45  E-value=0.00016  Score=42.12  Aligned_cols=32  Identities=31%  Similarity=0.340  Sum_probs=24.4

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|.|.+.+......+..+.|+|
T Consensus        65 I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          65 IWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence            67999999999999987665445666666554

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.43  E-value=0.00025  Score=40.03  Aligned_cols=27  Identities=19%  Similarity=0.501  Sum_probs=22.1

Q ss_pred             cEEEEeeecc-cCCCeeEEEcCCceecc
Q psy16421        118 QLVLECISEA-YPKSVNYWTREKGDMIA  144 (151)
Q Consensus       118 ~~~l~C~~~g-~p~~~~~W~k~~~~~~~  144 (151)
                      .+.|.|.+.| .|.+.|+|+|++.++..
T Consensus         1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~   28 (82)
T cd05883           1 EIELNCTAMASKPAATIRWFKGNKELTG   28 (82)
T ss_pred             CEEEEEEecCCCCCCEEEEEECCEECcC
Confidence            3689999876 78889999999876654

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=97.36  E-value=0.00099  Score=36.77  Aligned_cols=58  Identities=31%  Similarity=0.623  Sum_probs=41.8

Q ss_pred             eEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      ..+.+|+.+.|.|.+.+.|.+.+.|++ ++..+.... ..    +.+.    .+...+...+.|.+..
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~-~~~~~~~~~-~~----~~~~----~~~~~~~g~y~C~~~~   66 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYK-NGSPINSSQ-NG----LFIP----NVSPEDSGNYTCRASN   66 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEE-TTEEEEEES-SE----EEES----SEEGGGTEEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeee-eeeeeeeee-ee----eeee----eeccccCEEEEEEEEe
Confidence            467889999999999998889999999 555655322 11    2221    2456788889999854

...

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.29  E-value=0.0028  Score=37.16  Aligned_cols=66  Identities=18%  Similarity=0.368  Sum_probs=38.4

Q ss_pred             EeecCCeEEEEeeecC-CCCCe--EEEEeCCeeeEecccCCC--CCCe-eeeCCceeEeecCCcEEEEeeecc
Q psy16421         61 MVREGSNVSMRCAASG-SPPPS--IMWRREGGEMITNSFNNT--VPPI-VKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        61 ~~~~g~~~~l~C~~~g-~~~~~--~~W~~~~~~~~~~~~~~~--~~p~-~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      .+.+|+.+.|.|.+.| .|.+.  +.||+ +++.+.......  ..+. ...........+.+-+.++|.+.-
T Consensus        12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~r-G~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l   83 (100)
T cd05755          12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLR-GNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETEL   83 (100)
T ss_pred             cccCCCcEEEEEEEcCcCCCCcEEEEEee-CCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEe
Confidence            4578999999999866 67665  69999 666654322111  0110 010111111245667899999864

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.29  E-value=0.00064  Score=39.50  Aligned_cols=31  Identities=26%  Similarity=0.573  Sum_probs=27.4

Q ss_pred             CceEeecCCeEEEEee-ecCCCCCeEEEEeCC
Q psy16421         58 SDIMVREGSNVSMRCA-ASGSPPPSIMWRREG   88 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~-~~g~~~~~~~W~~~~   88 (151)
                      +...+.+|+.+.|.|. ..|.|.|.+.|++++
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~   42 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSD   42 (95)
T ss_pred             ceeEEecCCCEEEEecCCCCCCCCEEEEECCC
Confidence            5678899999999997 799999999999844

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=97.29  E-value=0.00046  Score=39.28  Aligned_cols=27  Identities=19%  Similarity=0.214  Sum_probs=22.0

Q ss_pred             CcEEEEeeeccc--CCCeeEEEcCCceec
Q psy16421        117 QQLVLECISEAY--PKSVNYWTREKGDMI  143 (151)
Q Consensus       117 ~~~~l~C~~~g~--p~~~~~W~k~~~~~~  143 (151)
                      +++.|.|.+.+.  +++.|.|+|||..+.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~   29 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLID   29 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECc
Confidence            468999999874  467799999988775

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=97.28  E-value=0.00068  Score=39.24  Aligned_cols=31  Identities=23%  Similarity=0.351  Sum_probs=26.5

Q ss_pred             ceeEeecCCcEEEEeeecccCCCeeEEEcCC
Q psy16421        109 QLIGAHEGQQLVLECISEAYPKSVNYWTREK  139 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~  139 (151)
                      ....+.+|+++.|.|.+.+.|.+.+.|++.+
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~   35 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPN   35 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCC
Confidence            4567889999999999999888999998643

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.27  E-value=0.00039  Score=40.50  Aligned_cols=25  Identities=20%  Similarity=0.302  Sum_probs=19.4

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCc
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVS   25 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~   25 (151)
                      |.+++.+|+|.|+|.+.+.......
T Consensus        64 i~nvt~~D~G~Y~C~~~t~P~g~~~   88 (96)
T cd05889          64 FNNATEEDVGLYCCSLVTYPQGSWE   88 (96)
T ss_pred             EcCCCcccCEEEEEEEEeCCCCCeE
Confidence            5799999999999998776432333

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=97.27  E-value=0.00034  Score=38.72  Aligned_cols=26  Identities=31%  Similarity=0.565  Sum_probs=20.8

Q ss_pred             EEEEeeecc-cCCCeeEEEcCCceecc
Q psy16421        119 LVLECISEA-YPKSVNYWTREKGDMIA  144 (151)
Q Consensus       119 ~~l~C~~~g-~p~~~~~W~k~~~~~~~  144 (151)
                      +.|.|.+.+ .|.+.+.|+|+|..+..
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~   27 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGA   27 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCccccc
Confidence            469999875 68889999999876643

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=97.26  E-value=0.00023  Score=37.10  Aligned_cols=21  Identities=38%  Similarity=0.664  Sum_probs=17.6

Q ss_pred             CccccccCCeEEEEEEEcCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVP   21 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~   21 (151)
                      |.+++.+|+|.|+|.+.|..|
T Consensus        43 i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408       43 IKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             EeeCCcccCEEEEEEEecCCC
Confidence            467889999999999988654

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.24  E-value=0.00051  Score=38.89  Aligned_cols=25  Identities=16%  Similarity=0.449  Sum_probs=21.0

Q ss_pred             EEEEeeecc-cCCCeeEEEcCCceec
Q psy16421        119 LVLECISEA-YPKSVNYWTREKGDMI  143 (151)
Q Consensus       119 ~~l~C~~~g-~p~~~~~W~k~~~~~~  143 (151)
                      +.|.|.+.| +|.+.++|+|||..+.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~   27 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIK   27 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECc
Confidence            689999987 7887899999987653

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.23  E-value=0.001  Score=41.38  Aligned_cols=68  Identities=21%  Similarity=0.295  Sum_probs=42.9

Q ss_pred             CCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeeccc-CC-CeeEEEcCCce
Q psy16421         65 GSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAY-PK-SVNYWTREKGD  141 (151)
Q Consensus        65 g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~k~~~~  141 (151)
                      .+.-...|.+...+..   . . ..-.+.    +..+|.+...+.......|+.+.|.|.+.|. |+ +.|.|+|+|..
T Consensus        11 ~D~G~Y~C~~~~~~~~---~-~-~~~~l~----v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~   80 (139)
T cd05771          11 HDEGTYICSVSTPPHQ---A-Q-QIIQLS----VSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG   80 (139)
T ss_pred             HHCEEEEEEEEccCcc---e-e-eEEEEE----EecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence            3567788987532211   1 1 111122    4567777666555445589999999999995 54 47999998753

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=97.22  E-value=0.00043  Score=36.79  Aligned_cols=27  Identities=19%  Similarity=0.543  Sum_probs=22.7

Q ss_pred             CCcEEEEeee-cccCCCeeEEEcCCcee
Q psy16421        116 GQQLVLECIS-EAYPKSVNYWTREKGDM  142 (151)
Q Consensus       116 g~~~~l~C~~-~g~p~~~~~W~k~~~~~  142 (151)
                      |+.+.|.|.+ .+.+...+.|+|++...
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~   28 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSL   28 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTT
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccc
Confidence            7899999999 67777889999987544

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=97.19  E-value=0.00065  Score=39.09  Aligned_cols=19  Identities=37%  Similarity=0.800  Sum_probs=17.0

Q ss_pred             CccccccCCeEEEEEEEcC
Q psy16421          1 MTEVSREHMGAYLCIASNG   19 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~   19 (151)
                      |.+|+++|+|.|+|...+.
T Consensus        57 i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          57 IPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             ccCCChhHCEEEEEEEECC
Confidence            5678999999999999886

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd00098 IgC Immunoglobulin Constant domain

Probab=97.15  E-value=0.00077  Score=38.85  Aligned_cols=31  Identities=16%  Similarity=0.529  Sum_probs=25.4

Q ss_pred             ecCCcEEEEeeeccc-CC-CeeEEEcCCceecc
Q psy16421        114 HEGQQLVLECISEAY-PK-SVNYWTREKGDMIA  144 (151)
Q Consensus       114 ~~g~~~~l~C~~~g~-p~-~~~~W~k~~~~~~~  144 (151)
                      ..|+.+.|.|.+.|. |. +.++|+++|..+..
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~   43 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTS   43 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCC
Confidence            468999999999997 64 56999999876644

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=97.14  E-value=0.00068  Score=38.41  Aligned_cols=25  Identities=20%  Similarity=0.404  Sum_probs=22.6

Q ss_pred             CCcEEEEeeecccCCCeeEEEcCCc
Q psy16421        116 GQQLVLECISEAYPKSVNYWTREKG  140 (151)
Q Consensus       116 g~~~~l~C~~~g~p~~~~~W~k~~~  140 (151)
                      |+++.|.|.+.|.|.+.+.|.++++
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~   25 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGK   25 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCc
Confidence            7899999999999999999998764

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.13  E-value=0.00079  Score=39.68  Aligned_cols=33  Identities=12%  Similarity=0.267  Sum_probs=25.2

Q ss_pred             eEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421        111 IGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      ..+..+..+.|.|.+.| +|.. .++|+|||..+.
T Consensus        11 ~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~   45 (102)
T cd05768          11 EELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLS   45 (102)
T ss_pred             HHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence            33456788999999999 5554 389999987654

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.11  E-value=0.00078  Score=37.97  Aligned_cols=25  Identities=20%  Similarity=0.480  Sum_probs=20.9

Q ss_pred             EEEEeeecc-cCCCeeEEEcCCceec
Q psy16421        119 LVLECISEA-YPKSVNYWTREKGDMI  143 (151)
Q Consensus       119 ~~l~C~~~g-~p~~~~~W~k~~~~~~  143 (151)
                      +.|.|.+.| +|.+.++|+++|..+.
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~   27 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELK   27 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEcc
Confidence            689999976 5888999999977653

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.11  E-value=0.00085  Score=37.97  Aligned_cols=25  Identities=20%  Similarity=0.436  Sum_probs=21.1

Q ss_pred             EEEEeeecc-cCCCeeEEEcCCceec
Q psy16421        119 LVLECISEA-YPKSVNYWTREKGDMI  143 (151)
Q Consensus       119 ~~l~C~~~g-~p~~~~~W~k~~~~~~  143 (151)
                      +.|+|.+.| +|.+.|+|+|+|..+.
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~   27 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELE   27 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECC
Confidence            689999987 6988999999986654

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.09  E-value=0.00069  Score=39.28  Aligned_cols=66  Identities=15%  Similarity=0.222  Sum_probs=40.7

Q ss_pred             ceEeecCCeEEEEeeecC-----CCCCeEEEEeCCeeeEecccCCCCCCeeeeCC---ceeEeecCCcEEEEeeecc
Q psy16421         59 DIMVREGSNVSMRCAASG-----SPPPSIMWRREGGEMITNSFNNTVPPIVKIPS---QLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g-----~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~~g~~~~l~C~~~g  127 (151)
                      ...+.+|+.+.|.|.+.+     .|.+.+.|+|+ +..+....  ....++....   ....+...+.....|.+..
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~-~~~~~~~~--~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N   81 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKS-DGKTPIPT--EERSRMHQQKDLLWFLPAALEDSGLYTCVVRN   81 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEc-CCCCcccc--cccceeeecCCeEEEccCCcccCeEEEEEEcC
Confidence            456778999999999988     68899999994 44322110  0001111111   1112456778889998865

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.09  E-value=0.0013  Score=39.38  Aligned_cols=34  Identities=18%  Similarity=0.393  Sum_probs=26.7

Q ss_pred             eeEeecCCcEEEEeeecc-cCC-CeeEEEcCCceec
Q psy16421        110 LIGAHEGQQLVLECISEA-YPK-SVNYWTREKGDMI  143 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g-~p~-~~~~W~k~~~~~~  143 (151)
                      ......|+.+.|.|.+.| +|. ..++|+|||..+.
T Consensus        15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~   50 (111)
T cd05772          15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELS   50 (111)
T ss_pred             hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECc
Confidence            334567888999999998 665 4699999987764

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=97.06  E-value=0.0022  Score=37.06  Aligned_cols=71  Identities=11%  Similarity=0.231  Sum_probs=44.2

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCC-CCCCeeeeC--------CceeEeecCCcEEEEeeeccc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN-TVPPIVKIP--------SQLIGAHEGQQLVLECISEAY  128 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~-~~~p~~~~~--------~~~~~~~~g~~~~l~C~~~g~  128 (151)
                      +.+.+.+|+++.|.|.+.+.+.+.+.|++.++..+-..... ....++...        ..-..+...+.....|.+...
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   84 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM   84 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence            56788899999999999888888999987444332211100 011222210        011135678889999997654

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>smart00409 IG Immunoglobulin

Probab=97.05  E-value=0.00071  Score=37.43  Aligned_cols=22  Identities=32%  Similarity=0.634  Sum_probs=18.7

Q ss_pred             CccccccCCeEEEEEEEcCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP   22 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~   22 (151)
                      |.++..+|+|.|.|.+.+..+.
T Consensus        55 i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00409       55 ISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             EEeeccccCeEEEEEEEcCCCe
Confidence            4678899999999999987763

>smart00410 IG_like Immunoglobulin like

Probab=97.05  E-value=0.00071  Score=37.43  Aligned_cols=22  Identities=32%  Similarity=0.634  Sum_probs=18.7

Q ss_pred             CccccccCCeEEEEEEEcCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP   22 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~   22 (151)
                      |.++..+|+|.|.|.+.+..+.
T Consensus        55 i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00410       55 ISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             EEeeccccCeEEEEEEEcCCCe
Confidence            4678899999999999987763

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.04  E-value=0.0015  Score=37.73  Aligned_cols=37  Identities=27%  Similarity=0.611  Sum_probs=25.9

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCc
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKG  140 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~  140 (151)
                      +|.+.+......   ++.+.|.|.+.| +|.. .++|+|+|.
T Consensus         2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~   40 (93)
T cd07698           2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGE   40 (93)
T ss_pred             CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCE
Confidence            455544433221   788999999999 4654 699999975

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=97.04  E-value=0.0022  Score=37.59  Aligned_cols=34  Identities=29%  Similarity=0.376  Sum_probs=29.9

Q ss_pred             CceeEeecCCcEEEEeeecccCCCe-eEEEcCCce
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKSV-NYWTREKGD  141 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~k~~~~  141 (151)
                      ...+.+.+|+++.|.|.+.++|+|. +.|.+++..
T Consensus        10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~   44 (101)
T cd05860          10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRT   44 (101)
T ss_pred             CceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcc
Confidence            4567899999999999999999998 999997553

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.04  E-value=0.0018  Score=37.60  Aligned_cols=29  Identities=17%  Similarity=0.400  Sum_probs=22.9

Q ss_pred             cCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421        115 EGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus       115 ~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      .+....|.|.+.| +|.. .++|+|||..+.
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~   44 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVT   44 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEcc
Confidence            4566899999999 6754 499999987654

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=97.02  E-value=0.0018  Score=37.73  Aligned_cols=34  Identities=24%  Similarity=0.332  Sum_probs=28.3

Q ss_pred             ceeEeecCCcEEEEeee-cccCCCeeEEEcCCcee
Q psy16421        109 QLIGAHEGQQLVLECIS-EAYPKSVNYWTREKGDM  142 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~-~g~p~~~~~W~k~~~~~  142 (151)
                      ....+.+|+.+.|.|.. .|.|.+.+.|+|++...
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~   45 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPN   45 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCccc
Confidence            34568899999999975 68999999999997643

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.01  E-value=0.001  Score=39.06  Aligned_cols=36  Identities=14%  Similarity=0.335  Sum_probs=27.0

Q ss_pred             CceeEeecCCcEEEEeeecc-cCC-CeeEEEcCCceec
Q psy16421        108 SQLIGAHEGQQLVLECISEA-YPK-SVNYWTREKGDMI  143 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g-~p~-~~~~W~k~~~~~~  143 (151)
                      +.......++.+.|.|.+.| +|. ..++|++||..+.
T Consensus         9 p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~   46 (100)
T cd07699           9 PSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVS   46 (100)
T ss_pred             CCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECc
Confidence            33334557888999999998 663 4599999987663

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.96  E-value=0.00097  Score=38.85  Aligned_cols=36  Identities=25%  Similarity=0.469  Sum_probs=26.9

Q ss_pred             CCceeEeecCCcEEEEeeeccc--CCCe-eEEEcCCcee
Q psy16421        107 PSQLIGAHEGQQLVLECISEAY--PKSV-NYWTREKGDM  142 (151)
Q Consensus       107 ~~~~~~~~~g~~~~l~C~~~g~--p~~~-~~W~k~~~~~  142 (151)
                      ++....+..|+.+.|.|.+.|.  |... ++|+||++..
T Consensus         5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~   43 (96)
T cd07696           5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEP   43 (96)
T ss_pred             CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEe
Confidence            3444456678999999999998  5543 9999986543

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=96.93  E-value=0.0044  Score=34.94  Aligned_cols=59  Identities=19%  Similarity=0.415  Sum_probs=35.3

Q ss_pred             EEEEeeecC-CCCCeEEEEeCCeeeEecccCC--CCCCeeeeC--CceeEeecCCcEEEEeeecc
Q psy16421         68 VSMRCAASG-SPPPSIMWRREGGEMITNSFNN--TVPPIVKIP--SQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        68 ~~l~C~~~g-~~~~~~~W~~~~~~~~~~~~~~--~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +.|.|.+.| +|.+.+.|++ +++.+......  .....+...  .....-.+.+-..|.|.+..
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k-~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~   65 (82)
T cd05883           2 IELNCTAMASKPAATIRWFK-GNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDH   65 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEE-CCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcC
Confidence            678999755 8889999999 66666542211  111222221  11112345777899999865

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=96.90  E-value=0.0012  Score=38.20  Aligned_cols=34  Identities=6%  Similarity=-0.063  Sum_probs=27.0

Q ss_pred             eEeecCCcEEEEeeeccc-----CCCeeEEEcCCceecc
Q psy16421        111 IGAHEGQQLVLECISEAY-----PKSVNYWTREKGDMIA  144 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~-----p~~~~~W~k~~~~~~~  144 (151)
                      ..+.+|.++.|+|...+.     |.|.+.|+||+..+..
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~   43 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEG   43 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCC
Confidence            457889999999997642     5788999999876643

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.89  E-value=0.0029  Score=36.77  Aligned_cols=28  Identities=18%  Similarity=0.532  Sum_probs=22.6

Q ss_pred             ecCCcEEEEeeecc-cCCCe-eEEEcCCce
Q psy16421        114 HEGQQLVLECISEA-YPKSV-NYWTREKGD  141 (151)
Q Consensus       114 ~~g~~~~l~C~~~g-~p~~~-~~W~k~~~~  141 (151)
                      ..++.+.|.|.+.| +|... ++|+|||..
T Consensus        14 ~~~~~~~L~C~a~gFyP~~i~vtW~k~g~~   43 (95)
T cd04985          14 SSSDSVTLGCLATGFLPEPVTFTWNSGSNS   43 (95)
T ss_pred             cCCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence            35778999999999 66544 999999875

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03273 envelope glycoprotein C; Provisional

Probab=96.88  E-value=0.024  Score=41.78  Aligned_cols=76  Identities=13%  Similarity=0.201  Sum_probs=50.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CC-
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SP-   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~-   78 (151)
                      |+.++..++|.|.=+..+..+ .......+.|           ....+|.+...+    -.+.+|+...-.|.+.. .| 
T Consensus       202 I~sltaaTeGvYtWr~~~~n~-t~~~~~~VtV-----------~~yr~Psvsv~~----~PvL~Ge~y~A~C~aa~YYPp  265 (486)
T PHA03273        202 IKSVDWRTAGVYVWSLYAKNG-TLVNSTSVTV-----------STYNAPLVDLSV----HPSLKGENYRAVCVVASYFPH  265 (486)
T ss_pred             EEecchhhceEEEEEEecCCC-ceeeeeEEEE-----------EEecCCcccccC----CccccCCCceEEEEeeeecCC
Confidence            466788899999877656544 2333333333           224677776644    35678999999999744 44 


Q ss_pred             -CCeEEEEeCCeeeEe
Q psy16421         79 -PPSIMWRREGGEMIT   93 (151)
Q Consensus        79 -~~~~~W~~~~~~~~~   93 (151)
                       +..+.|++ |+.++.
T Consensus       266 ~Sv~~rWf~-dg~~V~  280 (486)
T PHA03273        266 SSVKLRWYK-NAKEVD  280 (486)
T ss_pred             CceEEEEEe-CCeecc
Confidence             45789999 555555

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.88  E-value=0.0095  Score=34.35  Aligned_cols=69  Identities=16%  Similarity=0.356  Sum_probs=39.8

Q ss_pred             CCeEEEEeeecC-CCCC-eEEEEeCCeee-EecccCCC----CCCeeeeCCceeEeecCCcEEEEeeecc--cCCCe-eE
Q psy16421         65 GSNVSMRCAASG-SPPP-SIMWRREGGEM-ITNSFNNT----VPPIVKIPSQLIGAHEGQQLVLECISEA--YPKSV-NY  134 (151)
Q Consensus        65 g~~~~l~C~~~g-~~~~-~~~W~~~~~~~-~~~~~~~~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g--~p~~~-~~  134 (151)
                      ++.+.|.|.+.| .|.. .+.|++ +++. ........    ..-.+.. .+...+..++...++|.+..  .+.|. ..
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~-~g~~~~~~~~~~~~~~~~d~ty~~-~s~l~v~~~~~~~ytC~V~H~~~~~~~~~~   91 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLR-DGEDSVDDVESGEILPNGDGTYQL-WVTLEVPPEDKARYSCRVEHSGLKEPLIVP   91 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEE-CCEECcccccccceEECCCCeEEE-EEEEEECCCCCCEEEEEEEeCCCCCCeEEe
Confidence            678999999999 4543 889999 4542 22111000    0001111 22334556788999999864  34554 56


Q ss_pred             E
Q psy16421        135 W  135 (151)
Q Consensus       135 W  135 (151)
                      |
T Consensus        92 w   92 (93)
T cd07698          92 W   92 (93)
T ss_pred             C
Confidence            6

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>smart00409 IG Immunoglobulin

Probab=96.86  E-value=0.0044  Score=34.11  Aligned_cols=34  Identities=18%  Similarity=0.386  Sum_probs=28.1

Q ss_pred             eeEeecCCcEEEEeeecccCCCeeEEEcC-Cceec
Q psy16421        110 LIGAHEGQQLVLECISEAYPKSVNYWTRE-KGDMI  143 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~~~~W~k~-~~~~~  143 (151)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~   37 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA   37 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC
Confidence            45678999999999999888889999997 54443

>smart00410 IG_like Immunoglobulin like

Probab=96.86  E-value=0.0044  Score=34.11  Aligned_cols=34  Identities=18%  Similarity=0.386  Sum_probs=28.1

Q ss_pred             eeEeecCCcEEEEeeecccCCCeeEEEcC-Cceec
Q psy16421        110 LIGAHEGQQLVLECISEAYPKSVNYWTRE-KGDMI  143 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~~~~W~k~-~~~~~  143 (151)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~   37 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA   37 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC
Confidence            45678999999999999888889999997 54443

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=96.85  E-value=0.0028  Score=37.70  Aligned_cols=32  Identities=22%  Similarity=0.475  Sum_probs=27.2

Q ss_pred             eCCceeEeecCCcEEEEeeecccCCCeeEEEcC
Q psy16421        106 IPSQLIGAHEGQQLVLECISEAYPKSVNYWTRE  138 (151)
Q Consensus       106 ~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~  138 (151)
                      ..+....+.+|+++.|.|.+.+ +.+.+.|+|.
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq   34 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQ   34 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEE
Confidence            4566778999999999999988 6778999984

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=96.85  E-value=0.0021  Score=37.28  Aligned_cols=30  Identities=13%  Similarity=0.233  Sum_probs=23.5

Q ss_pred             eecCCcEEEEeeecc-cCC-CeeEEEcCCcee
Q psy16421        113 AHEGQQLVLECISEA-YPK-SVNYWTREKGDM  142 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g-~p~-~~~~W~k~~~~~  142 (151)
                      ....+.+.|.|.+.| +|. ..++|+|||..+
T Consensus        11 ~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~   42 (94)
T cd05847          11 TGTSETIQLLCLISGYTPGTIEVEWLVDGQVA   42 (94)
T ss_pred             cCCCCCEEEEEEEEeEECCCCEEEEEECCEEC
Confidence            345677999999999 665 459999998765

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=96.82  E-value=0.0022  Score=37.32  Aligned_cols=36  Identities=17%  Similarity=0.336  Sum_probs=26.1

Q ss_pred             CceeEeecCCcEEEEeeecc-cCCCe-eEEEcCCceec
Q psy16421        108 SQLIGAHEGQQLVLECISEA-YPKSV-NYWTREKGDMI  143 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g-~p~~~-~~W~k~~~~~~  143 (151)
                      ++......+..+.|.|.+.| +|... ++|+|||..+.
T Consensus         8 ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~   45 (96)
T cd07697           8 PSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSI   45 (96)
T ss_pred             CCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence            33334445678999999999 66554 99999987643

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=96.81  E-value=0.0023  Score=37.13  Aligned_cols=31  Identities=16%  Similarity=0.316  Sum_probs=25.1

Q ss_pred             ecCCcEEEEeeecc-cCCC-eeEEEcCCceecc
Q psy16421        114 HEGQQLVLECISEA-YPKS-VNYWTREKGDMIA  144 (151)
Q Consensus       114 ~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~~  144 (151)
                      ..|+.+.|.|.+.| +|.. .++|+|||..+..
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~   44 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETE   44 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCC
Confidence            46899999999999 6655 4999999876544

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=96.81  E-value=0.0026  Score=36.17  Aligned_cols=35  Identities=17%  Similarity=0.226  Sum_probs=29.3

Q ss_pred             ceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        109 QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ...++..|+++.|.|...+. .+.+.|++||..+..
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~   38 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNA   38 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCC
Confidence            34678999999999999885 679999999887654

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=96.78  E-value=0.0033  Score=37.20  Aligned_cols=33  Identities=21%  Similarity=0.441  Sum_probs=28.1

Q ss_pred             eCCceeEeecCCcEEEEeeecccCCCeeEEEcC
Q psy16421        106 IPSQLIGAHEGQQLVLECISEAYPKSVNYWTRE  138 (151)
Q Consensus       106 ~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~  138 (151)
                      ..+..+.+.+|+++.|.|.+.+.+...+.|+|.
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~   35 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQ   35 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCccEEEEEEE
Confidence            345677899999999999999877788999984

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=96.74  E-value=0.0035  Score=36.30  Aligned_cols=30  Identities=17%  Similarity=0.236  Sum_probs=23.1

Q ss_pred             ecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421        114 HEGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus       114 ~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      ..|....|.|.+.| +|.. .++|+|||..+.
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~   44 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP   44 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC
Confidence            45667799999999 6654 499999987653

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=96.73  E-value=0.0023  Score=38.57  Aligned_cols=36  Identities=14%  Similarity=0.372  Sum_probs=26.4

Q ss_pred             CceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421        108 SQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      +....+..++.+.|.|.+.| +|.. .++|+|||..+.
T Consensus        10 ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~   47 (115)
T cd05769          10 PSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVT   47 (115)
T ss_pred             cChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECC
Confidence            33333446778999999999 6664 599999987654

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=96.71  E-value=0.029  Score=32.58  Aligned_cols=75  Identities=13%  Similarity=0.082  Sum_probs=48.8

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccC-CCCCCeeeeCC--------ceeEeecCCcEEEEeeeccc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN-NTVPPIVKIPS--------QLIGAHEGQQLVLECISEAY  128 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~-~~~~p~~~~~~--------~~~~~~~g~~~~l~C~~~g~  128 (151)
                      +++++.+|+++.|.|.+.+.....+.|++.+...+-.... ....++|....        .-..+.+.+.....|.+...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            5678889999999999988777788999866444322211 12333443211        11135678899999998877


Q ss_pred             CCCe
Q psy16421        129 PKSV  132 (151)
Q Consensus       129 p~~~  132 (151)
                      |+-.
T Consensus        85 p~~~   88 (95)
T cd05881          85 PPQE   88 (95)
T ss_pred             cCeE
Confidence            6543

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=96.70  E-value=0.0034  Score=36.52  Aligned_cols=66  Identities=14%  Similarity=0.149  Sum_probs=40.7

Q ss_pred             CceEeecCCeEEEEee-ecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCC-c---eeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCA-ASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPS-Q---LIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~-~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~-~---~~~~~~g~~~~l~C~~~g  127 (151)
                      ....+.+|+.+.|.|. ..|.|.+.+.|+++ +.+....   .....+.... .   -..+...+.....|.++.
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~-~~~~~~~---~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n   81 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLN-EFPNFIP---EDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSS   81 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEEC-Ccccccc---cCCCeEEeCCCCcEEEeecCHhhCceeEEEEEe
Confidence            4467889999999998 58899999999994 4432110   0111222211 1   112445666788998865

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=96.63  E-value=0.0058  Score=36.07  Aligned_cols=35  Identities=9%  Similarity=0.280  Sum_probs=28.0

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccC-CCeeEEEcC
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYP-KSVNYWTRE  138 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~k~  138 (151)
                      +...+....+.+|+++.|.|.+.+.. ...+.|+|.
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq   38 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQ   38 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence            34556777899999999999998765 567999973

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.62  E-value=0.0053  Score=34.56  Aligned_cols=29  Identities=24%  Similarity=0.676  Sum_probs=23.6

Q ss_pred             cCCcEEEEeeecc-cCCCe-eEEEcCCceec
Q psy16421        115 EGQQLVLECISEA-YPKSV-NYWTREKGDMI  143 (151)
Q Consensus       115 ~g~~~~l~C~~~g-~p~~~-~~W~k~~~~~~  143 (151)
                      .++.+.|.|.+.| +|... |.|++||..+.
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~   37 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVT   37 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEET
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceee
Confidence            4889999999998 66554 99999987653

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=96.60  E-value=0.0069  Score=35.12  Aligned_cols=28  Identities=18%  Similarity=0.523  Sum_probs=24.2

Q ss_pred             EeecCCeEEEEeeecCCCCCeEEEEeCC
Q psy16421         61 MVREGSNVSMRCAASGSPPPSIMWRREG   88 (151)
Q Consensus        61 ~~~~g~~~~l~C~~~g~~~~~~~W~~~~   88 (151)
                      .+.+|+++.|.|.+.+.+.+.+.|++.+
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~   30 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSN   30 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECC
Confidence            4567999999999998899999999743

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=96.55  E-value=0.0048  Score=37.02  Aligned_cols=32  Identities=19%  Similarity=0.481  Sum_probs=26.9

Q ss_pred             CCceeEeecCCcEEEEeeecc--cCCCeeEEEcC
Q psy16421        107 PSQLIGAHEGQQLVLECISEA--YPKSVNYWTRE  138 (151)
Q Consensus       107 ~~~~~~~~~g~~~~l~C~~~g--~p~~~~~W~k~  138 (151)
                      .+..+.+.+|+++.|.|.+.+  .+.+.+.|+|.
T Consensus         4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq   37 (116)
T cd04982           4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQ   37 (116)
T ss_pred             cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence            456677889999999999877  67778999984

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=96.52  E-value=0.0048  Score=35.50  Aligned_cols=28  Identities=21%  Similarity=0.470  Sum_probs=23.8

Q ss_pred             eeEeecCCcEEEEeeecccCCCeeEEEcC
Q psy16421        110 LIGAHEGQQLVLECISEAYPKSVNYWTRE  138 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~~~~W~k~  138 (151)
                      .+...+|+++.|.|.. +.|.|.+.|+|.
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq   32 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQ   32 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEE
Confidence            3567899999999996 588899999973

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>smart00407 IGc1 Immunoglobulin C-Type

Probab=96.52  E-value=0.0051  Score=33.97  Aligned_cols=24  Identities=25%  Similarity=0.619  Sum_probs=19.3

Q ss_pred             EEEEeeecc-cCC-CeeEEEcCCcee
Q psy16421        119 LVLECISEA-YPK-SVNYWTREKGDM  142 (151)
Q Consensus       119 ~~l~C~~~g-~p~-~~~~W~k~~~~~  142 (151)
                      +.|.|.+.| +|+ ..++|+|||..+
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~   27 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEV   27 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEEC
Confidence            689999998 465 469999998753

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=96.51  E-value=0.0016  Score=38.23  Aligned_cols=21  Identities=19%  Similarity=0.347  Sum_probs=18.2

Q ss_pred             CccccccCCeEEEEEEEcCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVP   21 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~   21 (151)
                      |.+++.+|+|.|.|.+.+..+
T Consensus        71 I~~v~~~D~G~Y~C~v~~~~~   91 (105)
T cd00099          71 ISSLQPEDSAVYYCAVSLSGG   91 (105)
T ss_pred             ECCCCHHHCEEEEEEEecCCC
Confidence            678999999999999977644

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=96.48  E-value=0.008  Score=34.50  Aligned_cols=38  Identities=18%  Similarity=0.202  Sum_probs=29.0

Q ss_pred             CeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCce
Q psy16421        102 PIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGD  141 (151)
Q Consensus       102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~  141 (151)
                      |.|...+. ..+..|++++|.|... .+...+.|+|+|..
T Consensus         3 P~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~   40 (91)
T cd05751           3 PSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGST   40 (91)
T ss_pred             CEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCC
Confidence            55655554 3578999999999885 56677999998763

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>PHA03270 envelope glycoprotein C; Provisional

Probab=96.44  E-value=0.062  Score=39.38  Aligned_cols=76  Identities=20%  Similarity=0.287  Sum_probs=49.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CC-
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SP-   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~-   78 (151)
                      |+.++...+|.|+=...+..+ .......++|           ....+|.+...+    -.+.+|+...-.|.+.. .| 
T Consensus       186 I~slt~aTeGvY~Wr~~~~~~-~~~~~~~VtV-----------~~yr~Psvsv~~----~PvL~Ge~Y~AtC~va~YYPp  249 (466)
T PHA03270        186 IQELTLATQGMYYWARGPADR-PHRYGTWTRV-----------RMFRRPSLSIRP----HAVLEGEPFGATCVAANYYPG  249 (466)
T ss_pred             EEEcccccceEEEEEEecCCC-ceeeeeEEEE-----------EEecCCcccccC----CccccCCCceEEEEeeeecCC
Confidence            456788889999988777655 2222222222           234677776644    34678999999999744 44 


Q ss_pred             -CCeEEEEeCCeeeEe
Q psy16421         79 -PPSIMWRREGGEMIT   93 (151)
Q Consensus        79 -~~~~~W~~~~~~~~~   93 (151)
                       +..+.|++ |+.++.
T Consensus       250 ~Sv~lrWf~-ng~~V~  264 (466)
T PHA03270        250 DRAAFRWFE-GGDEVF  264 (466)
T ss_pred             CceEEEEEe-CCcccc
Confidence             45789999 555543

>PHA03271 envelope glycoprotein C; Provisional

Probab=96.41  E-value=0.07  Score=38.99  Aligned_cols=75  Identities=19%  Similarity=0.294  Sum_probs=46.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCcc-ceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSK-RIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SP   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~   78 (151)
                      |+++.-.|+|.|+....+........ .+.+.+.            ..||.+...+    -.+.+|+...=.|.+.. .|
T Consensus       211 I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~------------~RPPsVsV~a----~PVL~Ge~YkAtC~vAnYYP  274 (490)
T PHA03271        211 IRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVC------------QRPASVDVLA----PPVLSGENYKASCIVRHFYP  274 (490)
T ss_pred             EEEeecccceEEEEEecCCCCCccccceEEEEEE------------ecCCCccccC----CccccCCCceEEEEeeeecC
Confidence            57888899997766555544432222 2233222            3677676643    34667999999999754 44


Q ss_pred             --CCeEEEEeCCeeeE
Q psy16421         79 --PPSIMWRREGGEMI   92 (151)
Q Consensus        79 --~~~~~W~~~~~~~~   92 (151)
                        +..++|+. ||.+.
T Consensus       275 P~SvrlrWf~-nG~~V  289 (490)
T PHA03271        275 PGSVYVSWRQ-NGNIA  289 (490)
T ss_pred             CCceEEEEEe-CCccc
Confidence              45789998 45553

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=96.41  E-value=0.029  Score=31.70  Aligned_cols=59  Identities=14%  Similarity=0.325  Sum_probs=33.7

Q ss_pred             EEEEeeecC-CCCCeEEEEeCCeeeEecccCC-CCCC---eeeeCCceeEee---cCCcEEEEeeeccc
Q psy16421         68 VSMRCAASG-SPPPSIMWRREGGEMITNSFNN-TVPP---IVKIPSQLIGAH---EGQQLVLECISEAY  128 (151)
Q Consensus        68 ~~l~C~~~g-~~~~~~~W~~~~~~~~~~~~~~-~~~p---~~~~~~~~~~~~---~g~~~~l~C~~~g~  128 (151)
                      +.|.|.+.| .|...+.|++ +++.+...... ..++   .+... +...+.   ..+...++|.+...
T Consensus         2 ~~LtC~a~gf~P~~~itW~k-ng~~l~~~~~~~~~~~~~~t~~~~-s~L~~~~~~~d~g~~ytC~v~h~   68 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFK-NDKEIKDVKYLKEEDANRKTFTVS-STLDFRVDRSDDGVAIICRVDHE   68 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEE-CCEECcCceeeEeeCCCCCEEEEE-EEEEEEcccccCCCEEEEEEech
Confidence            678999877 7788999999 56665432110 0011   11111 112222   45678899998653

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=96.39  E-value=0.0043  Score=33.59  Aligned_cols=35  Identities=23%  Similarity=0.512  Sum_probs=25.5

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccC-CCeeEEE
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYP-KSVNYWT  136 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~  136 (151)
                      +|.|...+.......+. +.|.|.+.+.| .+.++|+
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~   36 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY   36 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE
Confidence            35666665555444444 99999999988 7789999

...

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.38  E-value=0.037  Score=32.08  Aligned_cols=69  Identities=16%  Similarity=0.381  Sum_probs=39.4

Q ss_pred             CCeEEEEeeecC-CC-CCeEEEEeCCeeeEecccC---C--CCCCeeeeCCceeEeecCCcEEEEeeeccc--CCCe-eE
Q psy16421         65 GSNVSMRCAASG-SP-PPSIMWRREGGEMITNSFN---N--TVPPIVKIPSQLIGAHEGQQLVLECISEAY--PKSV-NY  134 (151)
Q Consensus        65 g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~~~~~---~--~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~--p~~~-~~  134 (151)
                      ++...|.|.+.| .| ...+.|++ ||+.+.....   .  ..--.+.. .+...+..++...++|.+...  +.|. +.
T Consensus        15 ~~~~tL~C~a~gFyP~~I~v~W~~-~g~~~~~~~~~~~~~~~~Dgty~~-~s~L~v~~~~~~~ytC~V~H~~l~~p~~~~   92 (94)
T cd05767          15 GEPNTLICFVDNFFPPVLNVTWLK-NGVPVTDGVSETRYYPRQDLSFQK-FSYLNFTPEEGDIYSCIVEHWGLETPATRY   92 (94)
T ss_pred             CCCeEEEEEEEEEECCcCEEEEEE-CCeEccCceEEeeeEeCCCCcEEE-EEEEEEECCCCCeEEEEEEeCCCCCceEEE
Confidence            556799999988 55 45789999 6666542110   0  00011211 122344556667899998653  3444 45


Q ss_pred             E
Q psy16421        135 W  135 (151)
Q Consensus       135 W  135 (151)
                      |
T Consensus        93 w   93 (94)
T cd05767          93 W   93 (94)
T ss_pred             c
Confidence            5

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.34  E-value=0.014  Score=33.14  Aligned_cols=26  Identities=42%  Similarity=1.101  Sum_probs=20.2

Q ss_pred             CCeEEEEeee-cCCCCCeEEEEeCCee
Q psy16421         65 GSNVSMRCAA-SGSPPPSIMWRREGGE   90 (151)
Q Consensus        65 g~~~~l~C~~-~g~~~~~~~W~~~~~~   90 (151)
                      |+.+.+.|.+ .++|.+.+.|+.+++.
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~   40 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGP   40 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCc
Confidence            6799999975 6699999999994433

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=96.23  E-value=0.0088  Score=33.47  Aligned_cols=25  Identities=36%  Similarity=0.899  Sum_probs=20.6

Q ss_pred             EEEEeeecC-CCCCeEEEEeCCeeeEe
Q psy16421         68 VSMRCAASG-SPPPSIMWRREGGEMIT   93 (151)
Q Consensus        68 ~~l~C~~~g-~~~~~~~W~~~~~~~~~   93 (151)
                      +.|.|.+.| .|.+.+.|++ +++++.
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~-~g~~l~   27 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFR-DGEVLD   27 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEE-CCEEcc
Confidence            679999976 7888999999 677654

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PHA03269 envelope glycoprotein C; Provisional

Probab=96.21  E-value=0.16  Score=37.90  Aligned_cols=77  Identities=17%  Similarity=0.191  Sum_probs=47.8

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CC-
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SP-   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~-   78 (151)
                      |.+++..++|.|.=++.+...........+.|           .+..+|.+...+    --+.+|+...=.|.+.. .| 
T Consensus       293 I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV-----------~~yr~PsVsV~p----~PVL~Ge~YkAtC~vA~YYPp  357 (566)
T PHA03269        293 ILSLDASTEGTYIWRVIHTANKNVINEHHITV-----------MSYKRPNITVIG----DPVLLGNPYAAYCKVNKYYPP  357 (566)
T ss_pred             EeecccccCceEEEEEecCCCCceeeeeEEEE-----------EEecCCCccccC----CccccCCCceEEEEeeeecCC
Confidence            56788999999986665432212222222222           224667766643    35678999999999754 44 


Q ss_pred             -CCeEEEEeCCeeeEe
Q psy16421         79 -PPSIMWRREGGEMIT   93 (151)
Q Consensus        79 -~~~~~W~~~~~~~~~   93 (151)
                       +..+.|+++ +..+.
T Consensus       358 ~SvrlrWf~n-g~~V~  372 (566)
T PHA03269        358 HSVIVKWTSN-FGNIG  372 (566)
T ss_pred             CceEEEEEeC-CcccC
Confidence             457899994 44433

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=96.19  E-value=0.011  Score=31.22  Aligned_cols=25  Identities=40%  Similarity=1.087  Sum_probs=21.5

Q ss_pred             CCeEEEEeee-cCCCCCeEEEEeCCe
Q psy16421         65 GSNVSMRCAA-SGSPPPSIMWRREGG   89 (151)
Q Consensus        65 g~~~~l~C~~-~g~~~~~~~W~~~~~   89 (151)
                      |+++.|.|.+ .+.+...+.|++++.
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~   26 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQ   26 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTT
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCc
Confidence            7899999999 777889999999543

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=96.19  E-value=0.032  Score=31.46  Aligned_cols=59  Identities=20%  Similarity=0.433  Sum_probs=33.1

Q ss_pred             EEEEeeecC-CCCCeEEEEeCCeeeEecccC-C---CCCCeeeeCCc--eeEeecCCcEEEEeeecc
Q psy16421         68 VSMRCAASG-SPPPSIMWRREGGEMITNSFN-N---TVPPIVKIPSQ--LIGAHEGQQLVLECISEA  127 (151)
Q Consensus        68 ~~l~C~~~g-~~~~~~~W~~~~~~~~~~~~~-~---~~~p~~~~~~~--~~~~~~g~~~~l~C~~~g  127 (151)
                      +.|.|.+.+ +|.+.+.|++ +++.+..... .   ...-.+.....  .....+.+...+.|.+..
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k-~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h   67 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRK-GDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGH   67 (83)
T ss_pred             EEEEEEecCccCCCEeEEEE-CCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEEC
Confidence            578999866 6889999999 6666543211 0   00001111110  001224566899999864

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=96.16  E-value=0.057  Score=31.25  Aligned_cols=69  Identities=16%  Similarity=0.329  Sum_probs=39.7

Q ss_pred             cCCeEEEEeeecC-CCC-CeEEEEeCCeeeEecccCCCCCC------eeeeCCceeEeecCCcEEEEeeeccc--CCCe-
Q psy16421         64 EGSNVSMRCAASG-SPP-PSIMWRREGGEMITNSFNNTVPP------IVKIPSQLIGAHEGQQLVLECISEAY--PKSV-  132 (151)
Q Consensus        64 ~g~~~~l~C~~~g-~~~-~~~~W~~~~~~~~~~~~~~~~~p------~~~~~~~~~~~~~g~~~~l~C~~~g~--p~~~-  132 (151)
                      .|+...|.|.+.| .|. ..+.|++ +++.+..... ...+      .+.. .+...+..+....++|.+...  +.+. 
T Consensus        13 ~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~~~~~-~~~~~~~~dgTy~~-~s~L~~~~~~~~~ysC~V~H~~l~~~~~   89 (94)
T cd05766          13 LSHPHLLVCHVWGFYPPEITVKWFK-NGQEETEGVV-STELIPNGDWTYQI-LVMLETTPSRGDTYTCVVEHSSLQEPLT   89 (94)
T ss_pred             CCCCeEEEEEEeeecCCCCEEEEEE-CCeecCCCce-ecceEECCCCcEEE-EEEEEEcCCCCCEEEEEEEeCCCCCceE
Confidence            4788999999988 553 3789999 6666543210 0000      1111 122234455666899998753  4443 


Q ss_pred             eEE
Q psy16421        133 NYW  135 (151)
Q Consensus       133 ~~W  135 (151)
                      ..|
T Consensus        90 ~~~   92 (94)
T cd05766          90 VDW   92 (94)
T ss_pred             Eec
Confidence            555

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=96.13  E-value=0.015  Score=33.74  Aligned_cols=34  Identities=15%  Similarity=0.193  Sum_probs=27.4

Q ss_pred             ceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421        109 QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      ..+++.+|+++.|+|.+.+.....+.|++.+..+
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~   38 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQT   38 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcE
Confidence            3567899999999999998777778888766444

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=95.99  E-value=0.021  Score=33.00  Aligned_cols=38  Identities=16%  Similarity=0.221  Sum_probs=27.6

Q ss_pred             CeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCce
Q psy16421        102 PIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGD  141 (151)
Q Consensus       102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~  141 (151)
                      |.|...+. ..+.+|++++|.|.... +...+.|+|+|..
T Consensus         2 P~l~a~p~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~   39 (94)
T cd05711           2 PFLSAHPS-PVVPSGENVTLQCHSDI-RFDRFILYKEGRS   39 (94)
T ss_pred             CEEEecCC-CccCCCCeEEEEEecCC-CCCEEEEEECCCC
Confidence            45555443 34789999999998765 4557999998753

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=95.99  E-value=0.0099  Score=38.65  Aligned_cols=33  Identities=24%  Similarity=0.350  Sum_probs=25.1

Q ss_pred             CccccccCCeEEEEEEEcCCCC-CCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP-SVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~   33 (151)
                      |++|+++|+|.|.|....-... ..+...-|+|.
T Consensus        89 IknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt  122 (189)
T PHA02987         89 IKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVT  122 (189)
T ss_pred             EEeCChhhCeEEEEEEEecCCCCCceeEEEEEEE
Confidence            5789999999999997665443 56666677765

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.81  E-value=0.013  Score=34.30  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=26.4

Q ss_pred             CCceeEeecCCcEEEEeeecc-c-CCC-eeEEEcCCce
Q psy16421        107 PSQLIGAHEGQQLVLECISEA-Y-PKS-VNYWTREKGD  141 (151)
Q Consensus       107 ~~~~~~~~~g~~~~l~C~~~g-~-p~~-~~~W~k~~~~  141 (151)
                      ++....+..+..+.|.|.+.| + |.. .|.|.++|+.
T Consensus        10 pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~   47 (99)
T cd04986          10 RPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK   47 (99)
T ss_pred             CcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence            455555667899999999999 5 543 4999998753

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=95.76  E-value=0.04  Score=32.22  Aligned_cols=42  Identities=24%  Similarity=0.516  Sum_probs=29.1

Q ss_pred             CCeeEeCCCCCceEeecCCeEEEEeeecCCCCC-eEEEEeCCeeeEe
Q psy16421         48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPP-SIMWRREGGEMIT   93 (151)
Q Consensus        48 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~-~~~W~~~~~~~~~   93 (151)
                      ||.+...   ....+.+|+.+.|.|.+.+.|+| .+.|.. ++..+.
T Consensus         2 pP~i~~~---~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w-~~~~i~   44 (98)
T cd05898           2 PPIISSE---QVQYAVRGERGKVKCFIGSTPPPDRIAWAW-KENVLE   44 (98)
T ss_pred             CCEEecC---ceEEEeCCCcEEEEEEEccCCCCcEEEEEE-cccccc
Confidence            4555333   45677899999999999887876 467876 344443

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>PHA03376 BARF1; Provisional

Probab=95.58  E-value=0.091  Score=34.45  Aligned_cols=25  Identities=24%  Similarity=0.517  Sum_probs=21.1

Q ss_pred             CCcEEEEeeecccCCCeeEEEcCCc
Q psy16421        116 GQQLVLECISEAYPKSVNYWTREKG  140 (151)
Q Consensus       116 g~~~~l~C~~~g~p~~~~~W~k~~~  140 (151)
                      -+...+.|.+-|.|.|.++|+-|.+
T Consensus       139 ~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376        139 FSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             CCeeEEEEecCCcCCchheeccccC
Confidence            6677899998889999999997643

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=95.57  E-value=0.02  Score=33.39  Aligned_cols=27  Identities=22%  Similarity=0.553  Sum_probs=23.0

Q ss_pred             EeecCCcEEEEeeeccc-CCCeeEEEcC
Q psy16421        112 GAHEGQQLVLECISEAY-PKSVNYWTRE  138 (151)
Q Consensus       112 ~~~~g~~~~l~C~~~g~-p~~~~~W~k~  138 (151)
                      .+.+|+++.|.|.+.+. +...+.|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~   29 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQ   29 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEE
Confidence            46799999999999876 6677999984

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=95.52  E-value=0.19  Score=29.00  Aligned_cols=67  Identities=13%  Similarity=0.111  Sum_probs=37.7

Q ss_pred             ceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEeccc-CCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         59 DIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF-NNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      ...+.+|++++|.|.... ....+.|+|++. ...... .......+........+..++.....|...-
T Consensus         9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~-~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711           9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGR-SKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CCccCCCCeEEEEEecCC-CCCEEEEEECCC-CCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            356778999999998765 556799999543 211000 0000011111111122567888999998653

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=95.52  E-value=0.032  Score=33.42  Aligned_cols=31  Identities=29%  Similarity=0.745  Sum_probs=23.9

Q ss_pred             eecCCeEEEEeeecC-CC-CCeEEEEeCCeeeEe
Q psy16421         62 VREGSNVSMRCAASG-SP-PPSIMWRREGGEMIT   93 (151)
Q Consensus        62 ~~~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~   93 (151)
                      ...|+.++|.|.+.| .| ...+.|++ |++.+.
T Consensus        18 ~~~g~~~tL~C~a~gF~P~~i~v~W~k-ng~~~~   50 (111)
T cd05772          18 ANPGQSVNFTCSAHGFSPRDITVKWLK-NGNELS   50 (111)
T ss_pred             cCCCCCEEEEEEEeeEeCCCCEEEEEE-CCEECc
Confidence            446788999999988 55 36899999 676654

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=95.50  E-value=0.045  Score=32.43  Aligned_cols=29  Identities=21%  Similarity=0.610  Sum_probs=24.7

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~   87 (151)
                      ..+.+.+|+++.|.|...+ +...+.|++.
T Consensus         6 ~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq   34 (110)
T cd05899           6 RYLIKGRGQSVTLRCSQTS-GHDNMYWYRQ   34 (110)
T ss_pred             CceEEcCCCcEEEEEEECC-CCCEEEEEEE
Confidence            4577889999999999887 6788999984

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=95.49  E-value=0.031  Score=31.38  Aligned_cols=25  Identities=32%  Similarity=0.837  Sum_probs=19.9

Q ss_pred             EEEEeeecC-CCCCeEEEEeCCeeeEe
Q psy16421         68 VSMRCAASG-SPPPSIMWRREGGEMIT   93 (151)
Q Consensus        68 ~~l~C~~~g-~~~~~~~W~~~~~~~~~   93 (151)
                      +.|.|.+.+ .|.+.+.|++ +++.+.
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~-~~~~l~   27 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFK-GDKELK   27 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEE-CCEEcc
Confidence            679999865 6888999999 566654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=95.47  E-value=0.018  Score=33.43  Aligned_cols=32  Identities=9%  Similarity=-0.017  Sum_probs=24.7

Q ss_pred             EeecCCcEEEEee-ecc----cCCCeeEEEcCCceec
Q psy16421        112 GAHEGQQLVLECI-SEA----YPKSVNYWTREKGDMI  143 (151)
Q Consensus       112 ~~~~g~~~~l~C~-~~g----~p~~~~~W~k~~~~~~  143 (151)
                      .+..|.+..|.|. ..+    .+.+.++|+||+..+.
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~   42 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLD   42 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECc
Confidence            4678999999998 233    4677899999976654

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=95.44  E-value=0.14  Score=29.65  Aligned_cols=70  Identities=13%  Similarity=0.183  Sum_probs=39.5

Q ss_pred             cCCeEEEEeeecC-CC-CCeEEEEeCCeeeEecccCCCCC----CeeeeCCceeEeecCCcEEEEeeecc--cCCCe-eE
Q psy16421         64 EGSNVSMRCAASG-SP-PPSIMWRREGGEMITNSFNNTVP----PIVKIPSQLIGAHEGQQLVLECISEA--YPKSV-NY  134 (151)
Q Consensus        64 ~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~~~~~~~~~----p~~~~~~~~~~~~~g~~~~l~C~~~g--~p~~~-~~  134 (151)
                      .|....|.|.+.| .| ...+.|++ ||+.+.........    -.+.. .....+..++.-.++|.+..  -+.|. +.
T Consensus        14 ~g~~~~L~C~a~gFyP~~i~v~W~~-dg~~~~~~~~~~~~p~~d~tyq~-~s~l~~~~~~~~~ysC~V~H~~l~~p~~~~   91 (93)
T cd05770          14 NGKPNVLNCYVTGFHPPDIEIRLLK-NGVKIPKVEQSDLSFSKDWTFYL-LKSTEFTPTKGDEYACRVRHNSMSEPKKYK   91 (93)
T ss_pred             CCCceEEEEEEEEEeCCCCEEEEEE-CCEECCCcEECcEEECCCCCEEE-EEEEEECCCCCCeEEEEEEECCCCCCEEEe
Confidence            3666789999988 55 45789999 67665411100000    01111 12334556677779999864  34443 55


Q ss_pred             E
Q psy16421        135 W  135 (151)
Q Consensus       135 W  135 (151)
                      |
T Consensus        92 w   92 (93)
T cd05770          92 W   92 (93)
T ss_pred             C
Confidence            5

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=95.31  E-value=0.067  Score=31.47  Aligned_cols=30  Identities=23%  Similarity=0.525  Sum_probs=24.1

Q ss_pred             CceEeecCCeEEEEeeecCCC-CCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASGSP-PPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~-~~~~~W~~~   87 (151)
                      ..+.+.+|+++.|.|.+.+.. ...+.|++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq   38 (106)
T cd04980           8 ATLSVSPGESATISCKASQSVSSNYLAWYQQ   38 (106)
T ss_pred             CcEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence            456788999999999987654 567999973

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=95.31  E-value=0.055  Score=31.85  Aligned_cols=30  Identities=33%  Similarity=0.623  Sum_probs=25.8

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~   87 (151)
                      ..+.+.+|+++.|.|...+.+...+.|++.
T Consensus         6 ~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~   35 (109)
T cd04983           6 QSLSVQEGENVTLNCNYSTSTFYYLFWYRQ   35 (109)
T ss_pred             CceEEcCCCCEEEEEEECCCCccEEEEEEE
Confidence            467788999999999998777889999983

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=95.23  E-value=0.049  Score=32.61  Aligned_cols=33  Identities=15%  Similarity=0.393  Sum_probs=25.9

Q ss_pred             eeCCceeEeecCCcEEEEeeeccc-CCCeeEEEc
Q psy16421        105 KIPSQLIGAHEGQQLVLECISEAY-PKSVNYWTR  137 (151)
Q Consensus       105 ~~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~k  137 (151)
                      ...+..+.+..|+++.|.|..... ....+.|+|
T Consensus         3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyr   36 (116)
T cd07706           3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYK   36 (116)
T ss_pred             EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEE
Confidence            345667789999999999997653 445699997

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=95.20  E-value=0.094  Score=29.79  Aligned_cols=61  Identities=18%  Similarity=0.344  Sum_probs=40.6

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeC---CceeEeecCCcEEEEeeec
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIP---SQLIGAHEGQQLVLECISE  126 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~g~~~~l~C~~~  126 (151)
                      +.+++..|+.+.|.|...+. .+.+.|++ ++..+....      .+...   .....+..++.....|.+.
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~-ng~~l~~~~------r~~~~~~GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLF-NGTPLNAQF------SYRVGTDGLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEE-CCcccCCCc------ceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence            45678899999999999874 66999999 555543211      11111   1122345678889999874

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=94.92  E-value=0.035  Score=32.16  Aligned_cols=27  Identities=11%  Similarity=0.399  Sum_probs=21.7

Q ss_pred             EeecCCcEEEEeeeccc--CCCeeEEEcC
Q psy16421        112 GAHEGQQLVLECISEAY--PKSVNYWTRE  138 (151)
Q Consensus       112 ~~~~g~~~~l~C~~~g~--p~~~~~W~k~  138 (151)
                      .+.+|+++.|.|...+.  ....+.|+|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q   30 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQ   30 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEE
Confidence            46789999999998765  4566999973

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd00098 IgC Immunoglobulin Constant domain

Probab=94.88  E-value=0.044  Score=31.36  Aligned_cols=65  Identities=17%  Similarity=0.362  Sum_probs=38.4

Q ss_pred             ecCCeEEEEeeecCC-C-CCeEEEEeCCeeeEecccC---C--CCCCeeeeCCceeEeecC---CcEEEEeeecccC
Q psy16421         63 REGSNVSMRCAASGS-P-PPSIMWRREGGEMITNSFN---N--TVPPIVKIPSQLIGAHEG---QQLVLECISEAYP  129 (151)
Q Consensus        63 ~~g~~~~l~C~~~g~-~-~~~~~W~~~~~~~~~~~~~---~--~~~p~~~~~~~~~~~~~g---~~~~l~C~~~g~p  129 (151)
                      ..|+.+.|.|.+.|. | ...+.|++ +++.+.....   .  ...-.+.. .+...+...   +...++|.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~-~g~~~~~~~~~~~~~~~~~gt~~~-~s~l~v~~~~~~~~~~y~C~v~h~~   85 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLK-NGKELTSGVTTTPPVPNSDGTYSV-SSQLTVSPSDWNSGDTYTCVVTHES   85 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEE-CCEECCCceeccccccCCCCCEEE-EEEEEECHHHhCCCCCEEEEEEeCC
Confidence            358899999999886 5 46899999 6666543221   0  00001111 112223333   7889999987543

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=94.84  E-value=0.079  Score=31.05  Aligned_cols=34  Identities=26%  Similarity=0.570  Sum_probs=27.3

Q ss_pred             eeCCceeEeecCCcEEEEeeec-ccCCCeeEEEcC
Q psy16421        105 KIPSQLIGAHEGQQLVLECISE-AYPKSVNYWTRE  138 (151)
Q Consensus       105 ~~~~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~k~  138 (151)
                      ...+..+.+.+|+++.|.|... ......++|++.
T Consensus         5 t~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~   39 (114)
T PF07686_consen    5 TQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQ   39 (114)
T ss_dssp             EEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEE
T ss_pred             EEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEE
Confidence            3446677899999999999998 455667999983

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=94.82  E-value=0.05  Score=30.84  Aligned_cols=26  Identities=23%  Similarity=0.406  Sum_probs=20.7

Q ss_pred             CCcEEEEeeecccCC--CeeEEEcCCce
Q psy16421        116 GQQLVLECISEAYPK--SVNYWTREKGD  141 (151)
Q Consensus       116 g~~~~l~C~~~g~p~--~~~~W~k~~~~  141 (151)
                      |+++.|.|.+.+.+.  ..+.|.+++..
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~   28 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKK   28 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcc
Confidence            789999999988664  46899987653

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=94.66  E-value=0.3  Score=29.43  Aligned_cols=72  Identities=19%  Similarity=0.447  Sum_probs=41.7

Q ss_pred             cCCeEEEEeeecC-CCC-CeEEEEeCCeeeEecccC---CCCCC---eeeeCCceeEeecC----CcEEEEeeecccCCC
Q psy16421         64 EGSNVSMRCAASG-SPP-PSIMWRREGGEMITNSFN---NTVPP---IVKIPSQLIGAHEG----QQLVLECISEAYPKS  131 (151)
Q Consensus        64 ~g~~~~l~C~~~g-~~~-~~~~W~~~~~~~~~~~~~---~~~~p---~~~~~~~~~~~~~g----~~~~l~C~~~g~p~~  131 (151)
                      +++.+.|.|.+.+ .|. ..+.|++ |++.+.....   ....+   .+.. .+...+...    ....++|.+......
T Consensus        17 ~~~~~tL~Cla~gFyP~~I~V~W~k-ng~~l~~g~~~~~~~~~~~~gTYs~-~S~L~v~~~~w~~~~~~ytC~V~H~g~~   94 (115)
T cd05769          17 NKRKATLVCLATGFYPDHVSLSWKV-NGKEVTDGVATDPQALRENTSTYSI-SSRLRVSATEWFNPRNTFTCIVQFYGGT   94 (115)
T ss_pred             cCCCcEEEEEEEeEeCCCcEEEEEE-CCEECCCCcccccceecCCCCeEEE-EEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence            4677999999988 554 4789999 5665542210   00011   2221 122233333    257899999876555


Q ss_pred             e-eEEEc
Q psy16421        132 V-NYWTR  137 (151)
Q Consensus       132 ~-~~W~k  137 (151)
                      . ..|..
T Consensus        95 ~~~~~~~  101 (115)
T cd05769          95 DTDKWQS  101 (115)
T ss_pred             cceeeee
Confidence            4 78864

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=94.59  E-value=0.085  Score=31.52  Aligned_cols=30  Identities=30%  Similarity=0.554  Sum_probs=24.4

Q ss_pred             CceEeecCCeEEEEeeecC--CCCCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASG--SPPPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g--~~~~~~~W~~~   87 (151)
                      ..+.+.+|+++.|.|...+  .+.+.+.|++.
T Consensus         6 ~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq   37 (116)
T cd04982           6 LSITREESKSVTISCKVSGIDFSTTYIHWYRQ   37 (116)
T ss_pred             CeEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence            4566778999999999876  56778999984

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=94.53  E-value=0.11  Score=30.27  Aligned_cols=32  Identities=16%  Similarity=0.303  Sum_probs=25.6

Q ss_pred             CceeEeecCCcEEE-Eeeec-ccCCCeeEEEcCC
Q psy16421        108 SQLIGAHEGQQLVL-ECISE-AYPKSVNYWTREK  139 (151)
Q Consensus       108 ~~~~~~~~g~~~~l-~C~~~-g~p~~~~~W~k~~  139 (151)
                      .....+.+|+.+.+ .|.+. |+|.+.|+|+.+.
T Consensus         8 ~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~   41 (97)
T cd07704           8 GPSLLIDGGNGTTLAACCAAEGRPAADVTWETNV   41 (97)
T ss_pred             CCeeEeecCcceeEEEEEccCCccCCEeEEeCCC
Confidence            34456778999999 99965 7999999999863

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=94.51  E-value=0.22  Score=29.03  Aligned_cols=70  Identities=14%  Similarity=0.349  Sum_probs=38.8

Q ss_pred             ceEeecCCeEEE-Eee-ecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCcee--EeecCCcEEEEeeeccc
Q psy16421         59 DIMVREGSNVSM-RCA-ASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLI--GAHEGQQLVLECISEAY  128 (151)
Q Consensus        59 ~~~~~~g~~~~l-~C~-~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~g~~~~l~C~~~g~  128 (151)
                      ...+.+|+.+.+ .|. +.|.|.+.+.|+.+..............-.+++.....  .....+-..+.|.+...
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~   83 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHP   83 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCc
Confidence            345667888888 788 57799999999984222211111011111333322111  12235677889998653

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=94.50  E-value=0.064  Score=31.68  Aligned_cols=27  Identities=19%  Similarity=0.398  Sum_probs=21.3

Q ss_pred             EeecCCcEEEEeeecccC-CCeeEEEcC
Q psy16421        112 GAHEGQQLVLECISEAYP-KSVNYWTRE  138 (151)
Q Consensus       112 ~~~~g~~~~l~C~~~g~p-~~~~~W~k~  138 (151)
                      .+.+|+++.|.|.+.+.. ...+.|+|-
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq   29 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRW   29 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEE
Confidence            478999999999987643 346999973

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=94.39  E-value=0.035  Score=29.72  Aligned_cols=29  Identities=10%  Similarity=0.207  Sum_probs=21.2

Q ss_pred             eecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        113 AHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ...|..|.|+|...+.   .+.|.+|+..+.+
T Consensus         4 sisGTtVtlTCP~~~~---~i~W~~n~~~~~g   32 (65)
T cd07692           4 SISGTTVTVTCPLSGD---DIKWKKNDQVSQG   32 (65)
T ss_pred             EEeccEEEEECCCCCC---CceEEeCCccCCC
Confidence            3579999999976532   2999999754443

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=94.34  E-value=0.2  Score=27.43  Aligned_cols=58  Identities=22%  Similarity=0.425  Sum_probs=32.1

Q ss_pred             EEEEeeecC-CCC-CeEEEEeCCeeeEecccCCCCCC------eeeeCCceeEe---ecCCcEEEEeeeccc
Q psy16421         68 VSMRCAASG-SPP-PSIMWRREGGEMITNSFNNTVPP------IVKIPSQLIGA---HEGQQLVLECISEAY  128 (151)
Q Consensus        68 ~~l~C~~~g-~~~-~~~~W~~~~~~~~~~~~~~~~~p------~~~~~~~~~~~---~~g~~~~l~C~~~g~  128 (151)
                      +.|.|.+.| .|. ..+.|++ +++++.... ....+      .+.. .+...+   ..+....++|.+...
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k-~g~~~~~~~-~~~~~~~~~~gt~~~-~s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLR-NGQEVTSGV-STTDPLKNSDGTYFL-SSYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEE-CCEECCCCE-EECceEECCCCCEEE-EEEEEEccccCCCCCEEEEEEEEc
Confidence            679999988 454 5899999 666532111 01111      1111 111222   346778999998653

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=94.16  E-value=0.11  Score=30.48  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=28.2

Q ss_pred             CceEeecCCeEEEEeeecCCCCCe-EEEEeCCeeeE
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPS-IMWRREGGEMI   92 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~-~~W~~~~~~~~   92 (151)
                      ..+.+.+|+.+.|.|.....|+|. +.|.+ ++..+
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~-~~~~l   45 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIY-MNRTL   45 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEc-CCccc
Confidence            356788999999999999999997 99998 44443

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=94.05  E-value=0.63  Score=27.23  Aligned_cols=60  Identities=20%  Similarity=0.295  Sum_probs=36.3

Q ss_pred             eecCCeEEEEeeecC-CCC--CeEEEEeCCeeeEecccC-------CCCC--CeeeeCCceeEeecCCcEEEEeeec
Q psy16421         62 VREGSNVSMRCAASG-SPP--PSIMWRREGGEMITNSFN-------NTVP--PIVKIPSQLIGAHEGQQLVLECISE  126 (151)
Q Consensus        62 ~~~g~~~~l~C~~~g-~~~--~~~~W~~~~~~~~~~~~~-------~~~~--p~~~~~~~~~~~~~g~~~~l~C~~~  126 (151)
                      +.+|..+++.|.+.+ .|.  ..+.|++ +...+.....       ...+  ..+...+    ..+.+-..|+|.+.
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~Llk-G~~~l~~~~f~~~~~~ks~~~~~~~vtftp----treD~g~~fsC~A~   83 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLK-GETLLPSKSFLEDMDKKSLETKSLEVTFTP----TIEDIGKVLVCRAK   83 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEec-CcceecccccccccccCCCCCcceeEEEec----chhhCCcEEEEEEE
Confidence            467999999999865 554  5789998 5554432211       0112  1222222    25677789999974

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=93.96  E-value=0.086  Score=30.85  Aligned_cols=29  Identities=14%  Similarity=0.542  Sum_probs=22.3

Q ss_pred             cCCeEEEEeeecC-CC-CCeEEEEeCCeeeEe
Q psy16421         64 EGSNVSMRCAASG-SP-PPSIMWRREGGEMIT   93 (151)
Q Consensus        64 ~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~   93 (151)
                      .++.+.|.|.+.| .| ...+.|++ ||+.+.
T Consensus        16 ~~~~~~L~C~~~gfyP~~i~v~W~~-~g~~~~   46 (100)
T cd07699          16 KSGKATLVCLINDFYPGFATVQWKV-DGATVS   46 (100)
T ss_pred             cCCCcEEEEEEEeEECCCCEEEEEE-CCEECc
Confidence            4677999999988 55 56789999 666653

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd00096 Ig Immunoglobulin domain

Probab=93.88  E-value=0.048  Score=28.21  Aligned_cols=20  Identities=40%  Similarity=0.790  Sum_probs=16.3

Q ss_pred             CccccccCCeEEEEEEEcCC
Q psy16421          1 MTEVSREHMGAYLCIASNGV   20 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~   20 (151)
                      |.++..+|.|.|.|.+.+..
T Consensus        47 i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096          47 ISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             ECccCcccCcEEEEEEecCc
Confidence            35677889999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=93.80  E-value=0.061  Score=28.84  Aligned_cols=20  Identities=50%  Similarity=1.182  Sum_probs=17.2

Q ss_pred             CeEEEEeeecCCC-CCeEEEE
Q psy16421         66 SNVSMRCAASGSP-PPSIMWR   85 (151)
Q Consensus        66 ~~~~l~C~~~g~~-~~~~~W~   85 (151)
                      ..+.|.|.+.+.+ .+.++|+
T Consensus        16 ~~~~l~C~~~~~~~~~~~~W~   36 (75)
T PF13927_consen   16 GSVTLTCSAEGGPPPPSISWY   36 (75)
T ss_dssp             EEEEEEEEESSEESSEEEEEE
T ss_pred             eeEEEEEEEccccCCeEEEEE
Confidence            3399999998877 8899999

...

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=93.66  E-value=0.12  Score=29.94  Aligned_cols=28  Identities=21%  Similarity=0.510  Sum_probs=21.7

Q ss_pred             EeecCCeEEEEeeecCC--CCCeEEEEeCC
Q psy16421         61 MVREGSNVSMRCAASGS--PPPSIMWRREG   88 (151)
Q Consensus        61 ~~~~g~~~~l~C~~~g~--~~~~~~W~~~~   88 (151)
                      .+.+|+++.|.|...+.  ....+.|++..
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~   31 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQK   31 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEEC
Confidence            45689999999998764  45679999743

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=93.56  E-value=0.17  Score=30.50  Aligned_cols=30  Identities=27%  Similarity=0.366  Sum_probs=23.0

Q ss_pred             CceeEeecCCcEEEEeeecccC--CCeeEEEc
Q psy16421        108 SQLIGAHEGQQLVLECISEAYP--KSVNYWTR  137 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~k  137 (151)
                      +....+.+|+++.|.|...+.-  ...+.|+|
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYk   35 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVR   35 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEE
Confidence            4556789999999999876533  35599997

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=93.48  E-value=0.18  Score=28.79  Aligned_cols=32  Identities=13%  Similarity=0.063  Sum_probs=24.2

Q ss_pred             eeEeecCCcEEEEeeecccC--CCeeEEEcCCce
Q psy16421        110 LIGAHEGQQLVLECISEAYP--KSVNYWTREKGD  141 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p--~~~~~W~k~~~~  141 (151)
                      ...+..|++++|+|.....+  .+.+.|+..++.
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~   41 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNK   41 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCc
Confidence            34678999999999985534  458999975543

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=93.43  E-value=0.18  Score=29.79  Aligned_cols=34  Identities=15%  Similarity=0.195  Sum_probs=23.9

Q ss_pred             eeEeecCCcEEEEeeec-----------ccCCCeeEEEcCCceec
Q psy16421        110 LIGAHEGQQLVLECISE-----------AYPKSVNYWTREKGDMI  143 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~-----------g~p~~~~~W~k~~~~~~  143 (151)
                      ...+.+|+.+.|.|..-           ..+...+.|+|++....
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~   53 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGE   53 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCC
Confidence            35678999999999961           11234699999864443

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=93.32  E-value=0.12  Score=30.34  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=20.7

Q ss_pred             eecCCcEEEEeeecccCCCeeEEEcC
Q psy16421        113 AHEGQQLVLECISEAYPKSVNYWTRE  138 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g~p~~~~~W~k~  138 (151)
                      +.+|+++.|.|.....-...+.|+|.
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq   28 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQ   28 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEe
Confidence            57899999999986654456999974

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=93.26  E-value=0.097  Score=29.70  Aligned_cols=25  Identities=16%  Similarity=0.213  Sum_probs=20.7

Q ss_pred             CCcEEEEeeecccCCCeeEEEcCCc
Q psy16421        116 GQQLVLECISEAYPKSVNYWTREKG  140 (151)
Q Consensus       116 g~~~~l~C~~~g~p~~~~~W~k~~~  140 (151)
                      |++|.|.|.....+...+.|+|+..
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~   25 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKD   25 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCC
Confidence            7899999998876666799999753

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=93.18  E-value=0.13  Score=30.39  Aligned_cols=28  Identities=14%  Similarity=0.147  Sum_probs=21.7

Q ss_pred             eEeecCCcEEEEeeecccCCCeeEEEcC
Q psy16421        111 IGAHEGQQLVLECISEAYPKSVNYWTRE  138 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~~~~W~k~  138 (151)
                      ..+.+|+++.|.|.....+...+.|+|.
T Consensus         8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg   35 (105)
T cd05774           8 PQVAEGENVLLLVHNLPENLLAYAWYKG   35 (105)
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEcC
Confidence            4578999999999765444447999995

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=92.97  E-value=0.24  Score=29.70  Aligned_cols=30  Identities=23%  Similarity=0.368  Sum_probs=22.7

Q ss_pred             CceeEeecCCcEEEEeeecccC----CCeeEEEc
Q psy16421        108 SQLIGAHEGQQLVLECISEAYP----KSVNYWTR  137 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p----~~~~~W~k  137 (151)
                      +..+.+.+|+++.|.|.....+    ...+.|++
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~   38 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNF   38 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEE
Confidence            5567889999999999976433    23599974

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=92.76  E-value=0.26  Score=29.52  Aligned_cols=30  Identities=17%  Similarity=0.283  Sum_probs=22.7

Q ss_pred             CceeEeecCCcEEEEeeecccC----CCeeEEEc
Q psy16421        108 SQLIGAHEGQQLVLECISEAYP----KSVNYWTR  137 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p----~~~~~W~k  137 (151)
                      +..+.+.+|+++.|.|......    ...+.|++
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~   38 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSF   38 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEE
Confidence            5566788999999999976432    24599975

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd00096 Ig Immunoglobulin domain

Probab=92.67  E-value=0.18  Score=25.92  Aligned_cols=24  Identities=17%  Similarity=0.526  Sum_probs=19.2

Q ss_pred             EEEEeeecccCCCeeEEEcCCcee
Q psy16421        119 LVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       119 ~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      +.|.|.+.+.+...+.|++++...
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~   24 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPL   24 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEEC
Confidence            468999988777889999976544

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=92.39  E-value=0.29  Score=32.04  Aligned_cols=31  Identities=13%  Similarity=0.343  Sum_probs=25.3

Q ss_pred             ceeEeecCCcEEEEeeec-ccCCCeeEEEcCC
Q psy16421        109 QLIGAHEGQQLVLECISE-AYPKSVNYWTREK  139 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~-g~p~~~~~W~k~~  139 (151)
                      ..+++.+|+++.|.|... +...+.+.|.|..
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~   54 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNN   54 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcC
Confidence            345789999999999974 6667889999863

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=92.34  E-value=0.25  Score=28.47  Aligned_cols=29  Identities=14%  Similarity=0.351  Sum_probs=22.7

Q ss_pred             eEeecCCcEEEEeeecc-cCCCeeEEEcCC
Q psy16421        111 IGAHEGQQLVLECISEA-YPKSVNYWTREK  139 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g-~p~~~~~W~k~~  139 (151)
                      +.+.+|+++.|.|.... .+...+.|+|..
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~   31 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWG   31 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCC
Confidence            45789999999999765 345679999853

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=92.08  E-value=0.34  Score=28.53  Aligned_cols=28  Identities=29%  Similarity=0.572  Sum_probs=21.4

Q ss_pred             EeecCCeEEEEeeecCC-CCCeEEEEeCC
Q psy16421         61 MVREGSNVSMRCAASGS-PPPSIMWRREG   88 (151)
Q Consensus        61 ~~~~g~~~~l~C~~~g~-~~~~~~W~~~~   88 (151)
                      .+.+|++++|.|...+. ....+.|++..
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~   30 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWR   30 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEEC
Confidence            46689999999998653 34579999743

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=91.68  E-value=0.3  Score=28.29  Aligned_cols=24  Identities=21%  Similarity=0.416  Sum_probs=19.5

Q ss_pred             cCCcEEEEeeec-ccCCCeeEEEcC
Q psy16421        115 EGQQLVLECISE-AYPKSVNYWTRE  138 (151)
Q Consensus       115 ~g~~~~l~C~~~-g~p~~~~~W~k~  138 (151)
                      ......+.|.+. |+|.+.|+|+++
T Consensus        14 ~~~~~va~C~s~~gkP~a~ItW~~~   38 (95)
T cd05719          14 GEPVTVATCVSANGKPPATISWETT   38 (95)
T ss_pred             CCccEEEEEECCCCcCCCEEEEEeC
Confidence            345667889984 799999999996

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=91.57  E-value=0.26  Score=28.60  Aligned_cols=24  Identities=21%  Similarity=0.378  Sum_probs=19.6

Q ss_pred             cCCcEEEEeeec-ccCCCeeEEEcC
Q psy16421        115 EGQQLVLECISE-AYPKSVNYWTRE  138 (151)
Q Consensus       115 ~g~~~~l~C~~~-g~p~~~~~W~k~  138 (151)
                      ......+.|.+. |+|.+.|+|+++
T Consensus        14 ~~~~~va~C~s~~gkPaa~IsW~~~   38 (95)
T cd07703          14 TIPVPVAKCVSANGRPPARISWSST   38 (95)
T ss_pred             CCccEEEEEEcCCCCCCcEEEEEcC
Confidence            345678999976 799999999987

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=91.53  E-value=0.6  Score=27.84  Aligned_cols=30  Identities=27%  Similarity=0.579  Sum_probs=23.3

Q ss_pred             CceEeecCCeEEEEeeecCC-CCCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASGS-PPPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~-~~~~~~W~~~   87 (151)
                      ..+.+.+|+++.|.|..... ....+.|++.
T Consensus         7 ~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq   37 (116)
T cd07706           7 PDVSVQVGEEVTLNCRYETSWTNYYIFWYKQ   37 (116)
T ss_pred             CceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence            45677889999999997653 4567899973

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=91.41  E-value=0.57  Score=27.21  Aligned_cols=30  Identities=23%  Similarity=0.520  Sum_probs=22.0

Q ss_pred             eecCCeEEEEeeecCC--C-CCeEEEEeCCeee
Q psy16421         62 VREGSNVSMRCAASGS--P-PPSIMWRREGGEM   91 (151)
Q Consensus        62 ~~~g~~~~l~C~~~g~--~-~~~~~W~~~~~~~   91 (151)
                      +..++.++|.|.+.|.  | ...+.|+++++..
T Consensus        11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~   43 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEP   43 (96)
T ss_pred             hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEe
Confidence            3447899999999887  4 3467999954443

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=91.31  E-value=0.39  Score=28.19  Aligned_cols=27  Identities=22%  Similarity=0.512  Sum_probs=21.0

Q ss_pred             eecCCeEEEEeeecCCCCCeEEEEeCC
Q psy16421         62 VREGSNVSMRCAASGSPPPSIMWRREG   88 (151)
Q Consensus        62 ~~~g~~~~l~C~~~g~~~~~~~W~~~~   88 (151)
                      +.+|++++|.|.........+.|++..
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~   29 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQP   29 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeC
Confidence            567999999999865545679999844

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=91.29  E-value=0.32  Score=28.49  Aligned_cols=24  Identities=25%  Similarity=0.393  Sum_probs=19.3

Q ss_pred             cCCcEEEEeeecccC------CCeeEEEcC
Q psy16421        115 EGQQLVLECISEAYP------KSVNYWTRE  138 (151)
Q Consensus       115 ~g~~~~l~C~~~g~p------~~~~~W~k~  138 (151)
                      .|+++.|.|.....+      ...+.|+|.
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~   30 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKL   30 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEe
Confidence            489999999987653      457999986

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=91.10  E-value=0.45  Score=27.82  Aligned_cols=27  Identities=19%  Similarity=0.325  Sum_probs=21.7

Q ss_pred             eecCCcEEEEeeecc-cCC--CeeEEEcCC
Q psy16421        113 AHEGQQLVLECISEA-YPK--SVNYWTREK  139 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g-~p~--~~~~W~k~~  139 (151)
                      +.+|..+++.|.+.+ +|.  ..+.|+|..
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~   41 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGE   41 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCc
Confidence            478999999999985 665  459999853

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=91.01  E-value=0.65  Score=27.92  Aligned_cols=30  Identities=27%  Similarity=0.585  Sum_probs=22.6

Q ss_pred             CceEeecCCeEEEEeeecCCC--CCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASGSP--PPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~--~~~~~W~~~   87 (151)
                      ....+.+|++++|.|......  ...+.|++.
T Consensus         5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ   36 (117)
T cd04981           5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQ   36 (117)
T ss_pred             CCeEEcCCCCEEEEEEEeCCCcccceEEEEEE
Confidence            456778899999999875432  456899973

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>PHA03052 Hypothetical protein; Provisional

Probab=90.98  E-value=1  Score=24.25  Aligned_cols=34  Identities=18%  Similarity=0.301  Sum_probs=26.5

Q ss_pred             ceeEeecCCcEEEEeeec-ccC--CCeeEEEcCCcee
Q psy16421        109 QLIGAHEGQQLVLECISE-AYP--KSVNYWTREKGDM  142 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~-g~p--~~~~~W~k~~~~~  142 (151)
                      ..+.+..|.++++.|.+. |.|  .+.+.|.-|+...
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            556778899999999985 433  4569999987766

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=90.95  E-value=0.31  Score=28.66  Aligned_cols=29  Identities=21%  Similarity=0.549  Sum_probs=21.5

Q ss_pred             cCCeEEEEeeecC-CC-CCeEEEEeCCeeeEe
Q psy16421         64 EGSNVSMRCAASG-SP-PPSIMWRREGGEMIT   93 (151)
Q Consensus        64 ~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~   93 (151)
                      .++.+.|.|.+.| .| ...+.|++ +++.+.
T Consensus        15 ~~~~~tL~C~a~gFyP~~i~v~W~k-~g~~~~   45 (102)
T cd05768          15 LQETATLTCLVKGFSPSDIFVKWLQ-NGQPLS   45 (102)
T ss_pred             cCCceEEEEEEeeEeCCCCEEEEEE-CCEECC
Confidence            3678999999988 44 34679999 666543

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=90.61  E-value=0.95  Score=26.20  Aligned_cols=62  Identities=23%  Similarity=0.498  Sum_probs=34.5

Q ss_pred             CCeEEEEeeecC-CC-CCeEEEEeCCeeeEecccCCCCCCeee----e-CCceeEeecCC---cEEEEeeecccC
Q psy16421         65 GSNVSMRCAASG-SP-PPSIMWRREGGEMITNSFNNTVPPIVK----I-PSQLIGAHEGQ---QLVLECISEAYP  129 (151)
Q Consensus        65 g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~~~~~~~~~p~~~----~-~~~~~~~~~g~---~~~l~C~~~g~p  129 (151)
                      ++.+.|.|.+.| .| ...+.|++ +++. .... ...+....    . ..+...+..++   ...++|.+....
T Consensus        16 ~~~~~L~C~a~gFyP~~i~vtW~k-~g~~-~~~~-~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          16 SDSVTLGCLATGFLPEPVTFTWNS-GSNS-TSGV-KTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCcEEEEEEEeeEECCCcEEEEeE-CCEE-CCCc-EECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            567899999988 44 45789999 6665 2211 11111111    0 01222344443   667999987643

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=90.51  E-value=0.4  Score=28.03  Aligned_cols=24  Identities=29%  Similarity=0.473  Sum_probs=18.8

Q ss_pred             cCCcEEEEeeecccC------CCeeEEEcC
Q psy16421        115 EGQQLVLECISEAYP------KSVNYWTRE  138 (151)
Q Consensus       115 ~g~~~~l~C~~~g~p------~~~~~W~k~  138 (151)
                      .|+++.|.|.....|      ...+.|+|.
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~   30 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKL   30 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEe
Confidence            489999999987653      345999985

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=89.81  E-value=0.71  Score=26.68  Aligned_cols=27  Identities=22%  Similarity=0.623  Sum_probs=20.7

Q ss_pred             CCeEEEEeeecC-CC-CCeEEEEeCCeeeE
Q psy16421         65 GSNVSMRCAASG-SP-PPSIMWRREGGEMI   92 (151)
Q Consensus        65 g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~   92 (151)
                      .+.+.|.|.+.| .| ...+.|++ +++.+
T Consensus        14 ~~~~~L~C~a~gFyP~~I~vtW~~-dg~~~   42 (94)
T cd05847          14 SETIQLLCLISGYTPGTIEVEWLV-DGQVA   42 (94)
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEE-CCEEC
Confidence            466899999988 55 36789999 66654

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=89.21  E-value=0.37  Score=27.89  Aligned_cols=27  Identities=11%  Similarity=0.041  Sum_probs=20.9

Q ss_pred             ecCCcEEEEeeecc-cCCCeeEEEcCCc
Q psy16421        114 HEGQQLVLECISEA-YPKSVNYWTREKG  140 (151)
Q Consensus       114 ~~g~~~~l~C~~~g-~p~~~~~W~k~~~  140 (151)
                      ..|++|.|.|.... .....+.|+|...
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~   29 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTS   29 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCE
Confidence            46999999998765 4455699998743

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=88.96  E-value=0.84  Score=26.53  Aligned_cols=29  Identities=38%  Similarity=0.732  Sum_probs=23.9

Q ss_pred             CceEeecCCeEEEEeeec-CCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAAS-GSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~-g~~~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|... ......+.|++
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~   38 (114)
T PF07686_consen    9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYR   38 (114)
T ss_dssp             SEEEEETTSEEEEEEEEESSSSGSEEEEEE
T ss_pred             CeEEEecCCCEEEEEEEeCCCCcceEEEEE
Confidence            457788999999999987 44567899998

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=88.94  E-value=1  Score=27.11  Aligned_cols=31  Identities=13%  Similarity=0.309  Sum_probs=22.7

Q ss_pred             CceeEeecCCcEEEEeeecccC------CCeeEEEcC
Q psy16421        108 SQLIGAHEGQQLVLECISEAYP------KSVNYWTRE  138 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p------~~~~~W~k~  138 (151)
                      +..+.+.+|+++.|.|.....+      ...+.|+|.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq   42 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKG   42 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeC
Confidence            5566789999999999864321      234999974

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=88.93  E-value=0.9  Score=32.68  Aligned_cols=21  Identities=33%  Similarity=0.681  Sum_probs=17.7

Q ss_pred             cEEEEeeecc-cCCCe-eEEEcC
Q psy16421        118 QLVLECISEA-YPKSV-NYWTRE  138 (151)
Q Consensus       118 ~~~l~C~~~g-~p~~~-~~W~k~  138 (151)
                      .+.|+|.|.| +|... ++|.|+
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            6899999999 66544 999999

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=88.92  E-value=1  Score=27.11  Aligned_cols=31  Identities=13%  Similarity=-0.056  Sum_probs=23.3

Q ss_pred             CceeEeecCCcEEEEeeecccCCC---eeEEEcC
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKS---VNYWTRE  138 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~---~~~W~k~  138 (151)
                      +....+..|..+.|+|.++|.-..   .+.|+|.
T Consensus         5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq   38 (115)
T cd05721           5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKG   38 (115)
T ss_pred             cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEe
Confidence            445667889999999999875433   4889873

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=88.78  E-value=2.4  Score=25.51  Aligned_cols=30  Identities=13%  Similarity=0.182  Sum_probs=22.5

Q ss_pred             CceeEeecCCcEEEEeeeccc----CCCeeEEEc
Q psy16421        108 SQLIGAHEGQQLVLECISEAY----PKSVNYWTR  137 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~----p~~~~~W~k  137 (151)
                      +..+.+..|+++.|.|.....    +...+.|++
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~   38 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHY   38 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEE
Confidence            445678899999999998653    234799943

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=88.65  E-value=0.96  Score=25.98  Aligned_cols=28  Identities=14%  Similarity=0.302  Sum_probs=21.6

Q ss_pred             eEeecCCeEEEEeeecC-CCCCeEEEEeC
Q psy16421         60 IMVREGSNVSMRCAASG-SPPPSIMWRRE   87 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g-~~~~~~~W~~~   87 (151)
                      +.+.+|+++.|.|.... .....+.|++.
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~   30 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKW   30 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECC
Confidence            35678999999999754 34667899984

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=88.49  E-value=0.79  Score=25.54  Aligned_cols=62  Identities=18%  Similarity=0.358  Sum_probs=35.2

Q ss_pred             CCeEEEEeeecC-CCC-CeEEEEeCCeeeEecccCCC-----CCCeeeeCCceeEeecCCcEEEEeeeccc
Q psy16421         65 GSNVSMRCAASG-SPP-PSIMWRREGGEMITNSFNNT-----VPPIVKIPSQLIGAHEGQQLVLECISEAY  128 (151)
Q Consensus        65 g~~~~l~C~~~g-~~~-~~~~W~~~~~~~~~~~~~~~-----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~  128 (151)
                      +..+.|.|.+.+ .|. ..+.|++ +++.+.......     .--.+.. .+...+.......+.|.+...
T Consensus         8 ~~~~~L~C~v~~f~P~~i~v~W~~-~~~~~~~~~~~~~~~~~~dgty~~-~s~l~v~~~~~~~ysC~V~H~   76 (83)
T PF07654_consen    8 GGSVTLTCLVSGFYPKDITVTWLK-NGKEVTEGVETTPPPPNSDGTYSV-TSSLTVTWNSGDEYSCRVTHE   76 (83)
T ss_dssp             TSEEEEEEEEEEEBSSTEEEEEEE-TTEEETTTEEEEEEEEETTSEEEE-EEEEEEETTTTGGEEEEEEET
T ss_pred             CCCEEEEEEEEEEECCCcEEEEEe-ccceeeeeeeecccccccccceee-eEEEEecCCCCCEEEEEEEEC
Confidence            789999999987 553 3689999 565544211000     0111111 122234456666888988654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=88.21  E-value=1.2  Score=26.58  Aligned_cols=29  Identities=28%  Similarity=0.580  Sum_probs=21.5

Q ss_pred             CceEeecCCeEEEEeeecCCC----CCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSP----PPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~----~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|......    ...+.|++
T Consensus         6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~   38 (116)
T cd05715           6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSF   38 (116)
T ss_pred             CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEE
Confidence            456778899999999875422    24689986

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=88.20  E-value=1.2  Score=26.73  Aligned_cols=29  Identities=24%  Similarity=0.556  Sum_probs=21.6

Q ss_pred             CceEeecCCeEEEEeeecCCC----CCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSP----PPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~----~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|.....+    ...+.|++
T Consensus         6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~   38 (115)
T cd05880           6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNF   38 (115)
T ss_pred             ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEE
Confidence            467788999999999964332    24689974

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=87.11  E-value=1.2  Score=25.93  Aligned_cols=28  Identities=18%  Similarity=0.316  Sum_probs=21.0

Q ss_pred             CCeEEEEeeecC-CC-CCeEEEEeCCeeeEe
Q psy16421         65 GSNVSMRCAASG-SP-PPSIMWRREGGEMIT   93 (151)
Q Consensus        65 g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~   93 (151)
                      +..++|.|.+.| .| ...+.|++ +|+.+.
T Consensus        16 ~~~~tL~C~a~gFyP~~I~v~W~k-ng~~~~   45 (96)
T cd07697          16 QGQGIYLCLLENFFPDVIQVHWRE-GNSPSI   45 (96)
T ss_pred             CCCEEEEEEEEEEeCCCeEEEEEE-CCEECc
Confidence            567899999988 55 45689999 666543

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=86.21  E-value=1.1  Score=25.86  Aligned_cols=23  Identities=17%  Similarity=0.332  Sum_probs=17.2

Q ss_pred             CCcEEEEeeecccCCC-eeEEEcC
Q psy16421        116 GQQLVLECISEAYPKS-VNYWTRE  138 (151)
Q Consensus       116 g~~~~l~C~~~g~p~~-~~~W~k~  138 (151)
                      |+++.|.|........ .+.|+|.
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~   24 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKI   24 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEc
Confidence            7899999986544333 5999984

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=86.01  E-value=1.3  Score=26.36  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=18.6

Q ss_pred             cCCcEEEEeeecccC----------CCeeEEEcC
Q psy16421        115 EGQQLVLECISEAYP----------KSVNYWTRE  138 (151)
Q Consensus       115 ~g~~~~l~C~~~g~p----------~~~~~W~k~  138 (151)
                      .|+++.|.|.....+          ...+.|+|.
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~   34 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKL   34 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEe
Confidence            489999999987644          255999984

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=85.75  E-value=1  Score=33.06  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=22.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      +.+++.+|+|.|+|...-...+.-.+.+.+.|.
T Consensus        85 ~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVm  117 (500)
T PHA02914         85 EENIGEHEDGDFKCIFYLGDNESHKHEILVRKA  117 (500)
T ss_pred             ecCcccccCCcEEEEEEeCCceeEEEEEEEEEc
Confidence            357899999999999876654344445555554

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=85.61  E-value=1.8  Score=24.75  Aligned_cols=61  Identities=18%  Similarity=0.284  Sum_probs=36.2

Q ss_pred             EeecCCeEEEEeeecC--CCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         61 MVREGSNVSMRCAASG--SPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        61 ~~~~g~~~~l~C~~~g--~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      .+..|+++.|.|....  .|.+.+.|...+++.....  ......+...    .+..-+...-+|.+.-
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~--~~~~ktL~~~----qv~~qdSG~WtC~V~~   72 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQIL--NQDKKTLNLV----QLGPNDSGTWDCIVSV   72 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceec--cCCccEEEec----eeCcccCCEEEEEEEE
Confidence            4667999999999854  3355999997655433211  1222233222    2345566677887753

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=84.73  E-value=6.2  Score=23.37  Aligned_cols=69  Identities=17%  Similarity=0.219  Sum_probs=38.2

Q ss_pred             ceEeecCCeEEEEeeec-----------CCCCCeEEEEeCCeeeEecccCCCCC-CeeeeCCc---eeEeecCCcEEEEe
Q psy16421         59 DIMVREGSNVSMRCAAS-----------GSPPPSIMWRREGGEMITNSFNNTVP-PIVKIPSQ---LIGAHEGQQLVLEC  123 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~-----------g~~~~~~~W~~~~~~~~~~~~~~~~~-p~~~~~~~---~~~~~~g~~~~l~C  123 (151)
                      ...+.+|+.+.|.|...           ......+.|+|+ +..+......... .++.....   ...+...+.....|
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~-~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C   87 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKS-SGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTC   87 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEEC-CCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEE
Confidence            45677899999999961           112347899994 3222211100000 12222221   12355688889999


Q ss_pred             eeccc
Q psy16421        124 ISEAY  128 (151)
Q Consensus       124 ~~~g~  128 (151)
                      .+.+.
T Consensus        88 ~~rN~   92 (104)
T cd05896          88 VLRNS   92 (104)
T ss_pred             EECCC
Confidence            88753

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=84.64  E-value=1.1  Score=25.68  Aligned_cols=23  Identities=17%  Similarity=0.300  Sum_probs=17.4

Q ss_pred             CcEEEEeeecccC---CCeeEEEcCC
Q psy16421        117 QQLVLECISEAYP---KSVNYWTREK  139 (151)
Q Consensus       117 ~~~~l~C~~~g~p---~~~~~W~k~~  139 (151)
                      +++.|.|.....+   ...+.|+|..
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~   26 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKIT   26 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeEC
Confidence            4789999987654   3469999854

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=84.42  E-value=2.3  Score=25.50  Aligned_cols=31  Identities=23%  Similarity=0.355  Sum_probs=21.9

Q ss_pred             CceEeecCCeEEEEeeecCCC------CCeEEEEeCC
Q psy16421         58 SDIMVREGSNVSMRCAASGSP------PPSIMWRREG   88 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~------~~~~~W~~~~   88 (151)
                      ..+.+.+|+.++|.|......      ...+.|++..
T Consensus         7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~   43 (119)
T cd05712           7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGH   43 (119)
T ss_pred             CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCC
Confidence            456778899999999754211      3458999843

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=84.41  E-value=1.5  Score=23.84  Aligned_cols=15  Identities=27%  Similarity=0.485  Sum_probs=11.1

Q ss_pred             ccccCCeEEEEEEEc
Q psy16421          4 VSREHMGAYLCIASN   18 (151)
Q Consensus         4 v~~~d~G~Y~C~~~~   18 (151)
                      +..+-.|.|.|.+.+
T Consensus        40 ~~~DPRG~Y~C~~s~   54 (69)
T cd07691          40 RINDPRGTYSCKESE   54 (69)
T ss_pred             cccCCCcceEecCcc
Confidence            344567999998866

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=84.37  E-value=1.8  Score=25.90  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=17.5

Q ss_pred             CCeEEEEeeecCCC------------CCeEEEEeC
Q psy16421         65 GSNVSMRCAASGSP------------PPSIMWRRE   87 (151)
Q Consensus        65 g~~~~l~C~~~g~~------------~~~~~W~~~   87 (151)
                      |++++|.|......            .+.+.|+|.
T Consensus         2 G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~   36 (112)
T cd05900           2 GSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFI   36 (112)
T ss_pred             CCcEEEeeEEeCCcCccccccccCCCCCEEEEEEe
Confidence            78999999865432            468999983

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=84.08  E-value=1.8  Score=25.23  Aligned_cols=23  Identities=30%  Similarity=0.624  Sum_probs=18.3

Q ss_pred             CCeEEEEeeecCC------CCCeEEEEeC
Q psy16421         65 GSNVSMRCAASGS------PPPSIMWRRE   87 (151)
Q Consensus        65 g~~~~l~C~~~g~------~~~~~~W~~~   87 (151)
                      |+++.|.|.....      ....+.|++.
T Consensus         2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~   30 (106)
T cd05714           2 GGNVTLPCRFHLEPALSAPHGPRIKWTKL   30 (106)
T ss_pred             CCCEEEeEEeECCcccCCCCCcEEEEEEe
Confidence            7899999997654      2568999984

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>KOG1480|consensus

Probab=83.63  E-value=0.98  Score=35.94  Aligned_cols=33  Identities=24%  Similarity=0.311  Sum_probs=26.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |..+.+.|+|+|+|+|.|-++..++..+.+.+.
T Consensus       187 ~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy  219 (909)
T KOG1480|consen  187 ISQARLSDSGNYTCEATNIVAKRKSDPATVQVY  219 (909)
T ss_pred             ccchhhhhcccceeeeehhhccccccceEEEEE
Confidence            356788999999999999998777666666554

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=83.01  E-value=1.9  Score=24.78  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=16.5

Q ss_pred             CCcEEEEeeecccCC---CeeEEEcCC
Q psy16421        116 GQQLVLECISEAYPK---SVNYWTREK  139 (151)
Q Consensus       116 g~~~~l~C~~~g~p~---~~~~W~k~~  139 (151)
                      |+++.|.|.......   ..+.|+|..
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~   27 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQ   27 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECC
Confidence            788999999753221   248888754

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=82.89  E-value=2.2  Score=25.23  Aligned_cols=27  Identities=22%  Similarity=0.249  Sum_probs=21.1

Q ss_pred             eEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         60 IMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+|+.+.|.|.........+.|+|
T Consensus         8 ~~~~~G~~V~L~v~~~p~~~~~~~W~k   34 (105)
T cd05774           8 PQVAEGENVLLLVHNLPENLLAYAWYK   34 (105)
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEc
Confidence            356789999999986544556899999

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>PHA03271 envelope glycoprotein C; Provisional

Probab=82.08  E-value=7.7  Score=28.92  Aligned_cols=32  Identities=16%  Similarity=0.387  Sum_probs=25.4

Q ss_pred             eecCCcEEEEeeeccc-CCC--eeEEEcCCceecc
Q psy16421        113 AHEGQQLVLECISEAY-PKS--VNYWTREKGDMIA  144 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g~-p~~--~~~W~k~~~~~~~  144 (151)
                      +.+|+...-.|.+..+ |+-  .+.|++||..+..
T Consensus       257 VL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~  291 (490)
T PHA03271        257 VLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATP  291 (490)
T ss_pred             cccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence            6899999999999874 443  3999999876643

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=81.74  E-value=9  Score=23.04  Aligned_cols=29  Identities=24%  Similarity=0.457  Sum_probs=21.4

Q ss_pred             CceEeecCCeEEEEeeecCC----CCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGS----PPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~----~~~~~~W~~   86 (151)
                      ..+.+..|+.+.|.|.....    +...+.|.+
T Consensus         6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~   38 (116)
T cd05879           6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHY   38 (116)
T ss_pred             ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEE
Confidence            35677789999999997553    245899944

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>smart00406 IGv Immunoglobulin V-Type

Probab=81.71  E-value=2.2  Score=23.04  Aligned_cols=22  Identities=23%  Similarity=0.551  Sum_probs=16.0

Q ss_pred             cEEEEeeecccCCC--eeEEEcCC
Q psy16421        118 QLVLECISEAYPKS--VNYWTREK  139 (151)
Q Consensus       118 ~~~l~C~~~g~p~~--~~~W~k~~  139 (151)
                      ++.|.|.+.....+  .+.|++..
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~   24 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQP   24 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeC
Confidence            47899998765543  69999843

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=81.69  E-value=2.5  Score=24.57  Aligned_cols=24  Identities=21%  Similarity=0.473  Sum_probs=18.2

Q ss_pred             cCCeEEEEeeecCC------CCCeEEEEeC
Q psy16421         64 EGSNVSMRCAASGS------PPPSIMWRRE   87 (151)
Q Consensus        64 ~g~~~~l~C~~~g~------~~~~~~W~~~   87 (151)
                      .|+.++|.|.....      ....+.|++.
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~   30 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKL   30 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEe
Confidence            37899999987554      2457999984

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=81.04  E-value=2.6  Score=24.42  Aligned_cols=22  Identities=27%  Similarity=0.742  Sum_probs=17.8

Q ss_pred             CeEEEEeee-cCCCCCeEEEEeC
Q psy16421         66 SNVSMRCAA-SGSPPPSIMWRRE   87 (151)
Q Consensus        66 ~~~~l~C~~-~g~~~~~~~W~~~   87 (151)
                      ....+.|.+ .|+|.+.+.|+++
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~   38 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSST   38 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcC
Confidence            357789985 5799999999984

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=80.14  E-value=4  Score=23.59  Aligned_cols=22  Identities=27%  Similarity=0.765  Sum_probs=18.1

Q ss_pred             CeEEEEeee-cCCCCCeEEEEeC
Q psy16421         66 SNVSMRCAA-SGSPPPSIMWRRE   87 (151)
Q Consensus        66 ~~~~l~C~~-~g~~~~~~~W~~~   87 (151)
                      ......|.+ .|+|.+.+.|+++
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~   38 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETT   38 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeC
Confidence            456778996 7799999999983

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	151
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-05
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		7e-05
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		7e-04
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		8e-04

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG 88
          T + PP+I+  P +    VR G   S  CAA G PPPSI+WR+ G
Sbjct: 2  TGAHPPEIIRKPQNQG--VRVGGVASFYCAARGDPPPSIVWRKNG 44

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG 88
          +++ PP+I+  P +    VR G   S  CAA G PPPSI+WR+ G
Sbjct: 4  SAAHPPEIIRKPQNQG--VRVGGVASFYCAARGDPPPSIVWRKNG 46

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 42 IYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN 98
          +     PP I+++P  SD++V +G   ++ C A G P P+I W + GGE +    ++
Sbjct: 3  LRQEDFPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDD 56

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 42 IYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN 98
          +     PP I+++P  SD++V +G   ++ C A G P P+I W + GGE +    ++
Sbjct: 3  LRQEDFPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDD 56

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	151
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-25
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-21
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-09
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	9e-18
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-09
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-17
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-04
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-17
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	7e-13
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-17
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-16
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-17
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-11
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-17
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	7e-15
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-13
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-04
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-16
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-07
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-16
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-10
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-16
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-16
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	8e-15
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-14
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-14
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-09
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-16
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-12
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-16
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-10
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-16
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-12
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-08
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-16
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-10
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-16
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-09
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-16
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	5e-09
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-16
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	9e-14
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	9e-10
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-15
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-15
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-09
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-15
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-14
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-08
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-15
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-12
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-08
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-15
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-10
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-15
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-11
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-15
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-08
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	7e-15
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	6e-07
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	8e-15
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-09
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-08
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	9e-15
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-06
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-14
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-09
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-14
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-14
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	7e-05
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-14
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-14
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-11
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-10
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-14
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	6e-11
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-09
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	6e-09
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-14
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-11
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	4e-14
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	4e-12
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-14
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-13
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-06
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	6e-14
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-09
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	7e-14
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	7e-07
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	9e-14
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	6e-10
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-13
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-12
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-10
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-09
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	7e-09
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-13
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-10
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-13
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-13
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-13
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-06
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-05
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-13
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-07
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	5e-13
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	3e-08
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-13
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-12
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-04
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	6e-13
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-06
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-05
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	7e-13
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-09
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	8e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-11
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-10
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-09
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-10
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-09
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-06
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-12
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-05
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-12
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	5e-07
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-04
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	3e-12
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-08
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	8e-04
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	4e-12
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	9e-12
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-12
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-09
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-08
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-08
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-11
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-10
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	9e-07
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-11
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-04
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-11
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	7e-08
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-04
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-11
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-11
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	6e-08
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-05
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	8e-11
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-10
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-10
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	5e-10
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	5e-10
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	6e-10
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	9e-10
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-09
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-09
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-09
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-09
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-09
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	3e-09
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	3e-09
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-08
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-09
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-09
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-09
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	4e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-09
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	8e-09
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-08
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	1e-08
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	1e-08
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-08
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-08
2ens_A	96	Advanced glycosylation END product-specific recept	1e-08
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-08
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-08
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-07
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	4e-08
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-05
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	5e-08
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-05
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	5e-08
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	9e-08
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-05
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-07
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-07
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-07
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	3e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-07
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	4e-07
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-04
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	4e-07
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-06
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	6e-07
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	6e-07
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	6e-07
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-06
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-04
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	7e-07
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-04
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	1e-06
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-06
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-06
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-04
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-06
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	2e-06
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	3e-06
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	3e-06
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	9e-06
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	9e-06
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	9e-06
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-05
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	1e-05
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-05
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	4e-05
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-05
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-05
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-05
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	3e-05
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	3e-05
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	3e-05
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	3e-05
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-05
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-05
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	6e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-05
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	7e-05
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-04
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-04
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	1e-04
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	2e-04
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-04
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	2e-04
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-04
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-04
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-04
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	3e-04
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-04
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	4e-04
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	4e-04
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	5e-04
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	6e-04
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	7e-04

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 97.3 bits (242), Expect = 2e-25
 Identities = 28/190 (14%), Positives = 59/190 (31%), Gaps = 61/190 (32%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
              + +  G Y C+ +          + + +                  ++     +   
Sbjct: 67  YNANIDDAGIYKCVVTAEDGTQSEATVNVKI---------------FQKLMFKNAPTPQE 111

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN----------------------- 98
            +EG +  + C    S PP+I+W+ +G ++I                             
Sbjct: 112 FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYR 171

Query: 99  --------------------TVPPIVKIPSQLIG--AHEGQQLVLECISEAYPKSVNYWT 136
                                VPP V+    ++   A+ GQ + L C ++ +P+    WT
Sbjct: 172 CEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWT 231

Query: 137 REKGDMIANG 146
           ++ G+ I N 
Sbjct: 232 KD-GEPIENE 240

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 86.9 bits (215), Expect = 2e-21
 Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 14/99 (14%)

Query: 2   TEVSREHMGAYLCIASNGVPPSV-SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
             + +   G Y C         +  K I +IV              +PP +    +  + 
Sbjct: 160 RGIKKTDEGTYRCEGRILARGEINFKDIQVIVN-------------VPPTVQARQSIVNA 206

Query: 61  MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT 99
               G +V++ C A G P P++ W ++G  +     ++ 
Sbjct: 207 TANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDE 245

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 52.2 bits (125), Expect = 5e-09
 Identities = 18/141 (12%), Positives = 28/141 (19%), Gaps = 47/141 (33%)

Query: 58  SDIMVREGSNVSMRCAASGSPP-PSIMWRREGGEMI------------------------ 92
           S   +  G +    C  +G      I W    GE +                        
Sbjct: 10  SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA 69

Query: 93  ------------TNSFNNT----------VPPIVKIPSQLIGAHEGQQLVLECISEAYPK 130
                       T                   + K         EG+  V+ C   +   
Sbjct: 70  NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLP 129

Query: 131 SVNYWTREKGDMIANGKTPFQ 151
               W  +  D+I      F 
Sbjct: 130 PTIIWKHKGRDVILKKDVRFI 150

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 74.9 bits (184), Expect = 9e-18
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 15/94 (15%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
              + +  G Y C+ +          + + +                    + PT     
Sbjct: 67  YNANIDDAGIYKCVVTAEDGTQSEATVNVKIF-------------QKLMFKNAPT--PQE 111

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
            +EG +  + C    S PP+I+W+ +G ++I   
Sbjct: 112 FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKK 145

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 19/151 (12%), Positives = 32/151 (21%), Gaps = 49/151 (32%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGSPP-PSIMWRREGGEMITNS----------- 95
              +   P  S   +  G +    C  +G      I W    GE ++ +           
Sbjct: 2   VLQVDIVP--SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59

Query: 96  ------FNNT-----------------------------VPPIVKIPSQLIGAHEGQQLV 120
                   N                                 + K         EG+  V
Sbjct: 60  DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAV 119

Query: 121 LECISEAYPKSVNYWTREKGDMIANGKTPFQ 151
           + C   +       W  +  D+I      F 
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFI 150

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 75.1 bits (184), Expect = 1e-17
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 16/97 (16%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
           T  +  H G YLC    G    V+K+  L V               P  +  +       
Sbjct: 72  TAANISHDGNYLCRMKLGET-EVTKQEHLSVV-------------KPLTLSVHS--ERSQ 115

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN 98
             + S +++ C  +  P P + W    G     +  N
Sbjct: 116 FPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAAN 152

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 9/45 (20%), Positives = 16/45 (35%)

Query: 100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144
            P  + + S+     +   L + C   A+P     W   +G   A
Sbjct: 103 KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPA 147

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 74.0 bits (182), Expect = 2e-17
 Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 15/94 (15%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
             V     G Y C A+NGV  +V     L V+             M P I   P   ++ 
Sbjct: 67  LSVEDSDDGIYCCTANNGVGGAVESCGALQVK-------------MKPKITRPP--INVK 111

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           + EG    + C   G+P PS+ W +    +  NS
Sbjct: 112 IIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENS 145

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 62.1 bits (151), Expect = 7e-13
 Identities = 22/141 (15%), Positives = 32/141 (22%), Gaps = 44/141 (31%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG------------------- 88
            P I        +        +  CA    P P I W R                     
Sbjct: 7   APVITTPL--ETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLL 64

Query: 89  ---------------------GEMITNSFNNTV--PPIVKIPSQLIGAHEGQQLVLECIS 125
                                G  + +     V   P +  P   +   EG + VL C +
Sbjct: 65  TILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTT 124

Query: 126 EAYPKSVNYWTREKGDMIANG 146
              PK    W +    +  N 
Sbjct: 125 MGNPKPSVSWIKGDSALRENS 145

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 74.2 bits (182), Expect = 3e-17
 Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSK-RIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
             V+RE  G Y C+ S     S  + ++ LIV              +PP           
Sbjct: 73  KSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL-------------VPPSKPTVN--IPS 117

Query: 61  MVREGSNVSMRC-AASGSPPPSIMWRREGGEMITNS 95
               G+   + C    GSPP    W ++G  M TN 
Sbjct: 118 SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNP 153

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 71.5 bits (175), Expect = 2e-16
 Identities = 24/157 (15%), Positives = 42/157 (26%), Gaps = 53/157 (33%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT-------- 99
              +  + +  ++ + E + V + CA SG   P + W+ + G+       N         
Sbjct: 2   MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61

Query: 100 --------------------------------------------VPPIVKIPSQLIGAHE 115
                                                       VPP     +    A  
Sbjct: 62  RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI 121

Query: 116 GQQLVLECI-SEAYPKSVNYWTREKGDMIANGKTPFQ 151
           G + VL C   +  P S   W ++   M  N K+   
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRA 158

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 75.2 bits (185), Expect = 3e-17
 Identities = 33/188 (17%), Positives = 59/188 (31%), Gaps = 57/188 (30%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
            +V++   G Y C ASN      S    L VQ              PP  +     S  +
Sbjct: 66  LKVTKGDAGQYTCYASNVAG-KDSCSAQLGVQ-------------EPPRFIKKLEPS-RI 110

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEM------------------ITNSF------- 96
           V++  +    C   GSP   ++W ++  E+                  + N         
Sbjct: 111 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170

Query: 97  ----NNT-------------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREK 139
               +N               PP+ +     +   +G  + LEC  +  P     W ++K
Sbjct: 171 TCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDK 230

Query: 140 GDMIANGK 147
            ++ +  K
Sbjct: 231 RELRSGKK 238

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 59.8 bits (145), Expect = 1e-11
 Identities = 18/143 (12%), Positives = 38/143 (26%), Gaps = 45/143 (31%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGE----------------- 90
           PP     P    + +  G + + +C  +G+ P  I W ++  E                 
Sbjct: 5   PPFFDLKP--VSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62

Query: 91  ----------------MITNSFN----------NTVPPIVKIPSQLIGAHEGQQLVLECI 124
                             +N                P  +K         + +    EC 
Sbjct: 63  LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 122

Query: 125 SEAYPKSVNYWTREKGDMIANGK 147
               P+    W +++ ++  + K
Sbjct: 123 IGGSPEIKVLWYKDETEIQESSK 145

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 76.1 bits (187), Expect = 3e-17
 Identities = 29/172 (16%), Positives = 47/172 (27%), Gaps = 49/172 (28%)

Query: 4   VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
           V+R  +G Y C   N +    S  ++L V               P D    P  S    R
Sbjct: 349 VTRNDVGPYECGIQNELSVDHSDPVILNVL------------YGPDDPTISP--SYTYYR 394

Query: 64  EGSNVSMRCAASGSPPPSIMWRREGGEMITNS---FNNT--------------------- 99
            G N+S+ C A+ +PP    W  +G           +N                      
Sbjct: 395 PGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSR 454

Query: 100 -----------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKG 140
                      +P      +      +   +   C  EA   +  +W   + 
Sbjct: 455 TTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQS 506

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 69.6 bits (170), Expect = 7e-15
 Identities = 26/174 (14%), Positives = 43/174 (24%), Gaps = 49/174 (28%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
             V+R    +Y C   N V    S  ++L V               P      P   +  
Sbjct: 169 FNVTRNDTASYKCETQNPVSARRSDSVILNVL------------YGPDAPTISP--LNTS 214

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS---FNNT------------------- 99
            R G N+++ C A+ +PP    W   G    +       N                    
Sbjct: 215 YRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGL 274

Query: 100 -------------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKG 140
                         P      +      +   + L C  E    +  +W   + 
Sbjct: 275 NRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQS 328

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 65.7 bits (160), Expect = 2e-13
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 14/87 (16%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
             V+R    AY+C   N V  + S  + L V               P   +  P   D  
Sbjct: 525 FNVTRNDARAYVCGIQNSVSANRSDPVTLDVL------------YGPDTPIISP--PDSS 570

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREG 88
              G+N+++ C ++ +P P   WR  G
Sbjct: 571 YLSGANLNLSCHSASNPSPQYSWRING 597

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 55.7 bits (134), Expect = 4e-10
 Identities = 22/188 (11%), Positives = 46/188 (24%), Gaps = 58/188 (30%)

Query: 4   VSREHMGAYLCIASNGV-PPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMV 62
           ++  + G+Y C A N     + +    + V                P      +++   V
Sbjct: 255 ITVNNSGSYTCQAHNSDTGLNRTTVTTITVYA-------------EPPKPFITSNNSNPV 301

Query: 63  REGSNVSMRCAASGSPPPSIMWRREGGEMITNS------FNNT----------------- 99
            +   V++ C          +W      +  +        N T                 
Sbjct: 302 EDEDAVALTCEPEIQNTT-YLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECG 360

Query: 100 -------------------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKG 140
                               P    I         G  L L C + + P +   W  + G
Sbjct: 361 IQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID-G 419

Query: 141 DMIANGKT 148
           ++  + + 
Sbjct: 420 NIQQHTQE 427

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 54.6 bits (131), Expect = 1e-09
 Identities = 18/177 (10%), Positives = 32/177 (18%), Gaps = 54/177 (30%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
             + +   G Y          +        V                P       ++   
Sbjct: 76  QNIIQNDTGFYTLHVIKSDLVNEEATGQFRVY------------PELPKPSISS-NNSKP 122

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREG--------------------------------- 88
           V +   V+  C         + W                                     
Sbjct: 123 VEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCE 182

Query: 89  -----GEMITNSFNNTV---PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR 137
                    ++S    V   P    I         G+ L L C + + P +   W  
Sbjct: 183 TQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFV 239

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 54.2 bits (130), Expect = 2e-09
 Identities = 24/189 (12%), Positives = 44/189 (23%), Gaps = 56/189 (29%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
           + ++ ++ G Y C A+N      S+  +  +           T S         +++   
Sbjct: 431 SNITEKNSGLYTCQANNSAS-GHSRTTVKTI-----------TVSAELPKPSISSNNSKP 478

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREG--------------------------------- 88
           V +   V+  C          +W   G                                 
Sbjct: 479 VEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVC 537

Query: 89  ------GEMITNSFNNTV---PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREK 139
                     ++     V   P    I         G  L L C S + P     W    
Sbjct: 538 GIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRIN- 596

Query: 140 GDMIANGKT 148
           G    + + 
Sbjct: 597 GIPQQHTQV 605

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 38.4 bits (89), Expect = 5e-04
 Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 2/66 (3%)

Query: 56  TSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHE 115
            S+   V EG  V +             W +  GE +  +       I    +    A+ 
Sbjct: 5   ESTPFNVAEGKEVLLLVHNLPQHLFGYSWYK--GERVDGNRQIIGYVIGTQQATPGPAYS 62

Query: 116 GQQLVL 121
           G++++ 
Sbjct: 63  GREIIY 68

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 73.7 bits (181), Expect = 1e-16
 Identities = 29/191 (15%), Positives = 52/191 (27%), Gaps = 60/191 (31%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
              + E  G Y C A++    +    ++L +                    +    S   
Sbjct: 65  YNANIEDAGIYRCQATDAKGQTQEATVVLEIY-------------QKLTFREVV--SPQE 109

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREG--------------------------------- 88
            ++G +  + C  S SP P++ W                                     
Sbjct: 110 FKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYR 169

Query: 89  --------GEMITNSFNNTV--PPIVKIP--SQLIGAHEGQQLVLECISEAYPKSVNYWT 136
                   GE+        V  PP + +P  S    A  G+++   C +   P+    W 
Sbjct: 170 CEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWF 229

Query: 137 REKGDMIANGK 147
           R    +  N K
Sbjct: 230 RNGKLIEENEK 240

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 19/151 (12%), Positives = 32/151 (21%), Gaps = 47/151 (31%)

Query: 45  SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMI------------ 92
           S     +      S + +  G +    C A G P   I W    GE I            
Sbjct: 1   SMALLQVTISL--SKVELSVGESKFFTCTAIGEPES-IDWYNPQGEKIISTQRVVVQKEG 57

Query: 93  ----------------------TNSFNNT----------VPPIVKIPSQLIGAHEGQQLV 120
                                 T++   T               +         +G+   
Sbjct: 58  VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAE 117

Query: 121 LECISEAYPKSVNYWTREKGDMIANGKTPFQ 151
           + C   + P     W     ++       F 
Sbjct: 118 VVCRVSSSPAPAVSWLYHNEEVTTISDNRFA 148

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 71.8 bits (176), Expect = 1e-16
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 17/96 (17%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
            +   E  G Y C+       +      + V+               PDI  +       
Sbjct: 61  NKPRAEDSGEYHCVYHFV--SAPKANATIEVK-------------AAPDITGHK--RSEN 103

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN 97
             EG +  M C + G P P  MWR++   +     N
Sbjct: 104 KNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISN 139

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 56.0 bits (135), Expect = 1e-10
 Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 40/140 (28%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGSPPP--SIMWRREGGEMITNS---------- 95
            P I+       I+      V+++C  + S        W + G E+              
Sbjct: 3   EPRIVTSE--EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRI 60

Query: 96  --------------FNNT------------VPPIVKIPSQLIGAHEGQQLVLECISEAYP 129
                         ++                P +    +    +EGQ  ++ C S  YP
Sbjct: 61  NKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYP 120

Query: 130 KSVNYWTREKGDMIANGKTP 149
                W +++  +       
Sbjct: 121 HPEWMWRKKENGVFEEISNS 140

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 74.5 bits (183), Expect = 1e-16
 Identities = 27/181 (14%), Positives = 52/181 (28%), Gaps = 56/181 (30%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
           + +  + H+G Y C ASN +                 +KL +    +PP     P    +
Sbjct: 161 ILQTDQSHVGQYNCSASNPLG-----------TASSSAKLTLSEHEVPPFFDLKP--VSV 207

Query: 61  MVREGSNVSMRCAASGSPPPSIMWRREGGEM-------ITNSFNNTV------------- 100
            +  G + + +C  +G+ P  I W ++  E+       +T   N                
Sbjct: 208 DLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQ 267

Query: 101 -----------------------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR 137
                                  P  +K         + +    EC     P+    W +
Sbjct: 268 YTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK 327

Query: 138 E 138
           +
Sbjct: 328 D 328

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 72.9 bits (179), Expect = 5e-16
 Identities = 27/193 (13%), Positives = 54/193 (27%), Gaps = 62/193 (32%)

Query: 2   TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
            +V    +G Y C A N  G   +V+   +L+++             +PP         D
Sbjct: 66  NKVDHSDVGEYTCKAENSVG---AVASSAVLVIK----------ERKLPPSFARKL--KD 110

Query: 60  IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS------------------------ 95
           +    G  V+  C  +GS P  + W ++G  +  ++                        
Sbjct: 111 VHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVG 170

Query: 96  ---------------------FNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY 134
                                  + VPP   +    +    G+    +C           
Sbjct: 171 QYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKIT 230

Query: 135 WTREKGDMIANGK 147
           W ++  ++   G 
Sbjct: 231 WAKDNREIRPGGN 243

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 69.4 bits (170), Expect = 8e-15
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 16/94 (17%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
             V    +G Y C ASN V  S +    + ++              PP  +     SDI 
Sbjct: 445 LNVDSADIGEYQCKASNDVG-SDTCVGSITLKA-------------PPRFVKKL--SDIS 488

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
              G  V ++    G+ P S+ W ++ GE++  S
Sbjct: 489 TVVGEEVQLQATIEGAEPISVAWFKDKGEIVRES 522

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 69.1 bits (169), Expect = 1e-14
 Identities = 32/189 (16%), Positives = 57/189 (30%), Gaps = 57/189 (30%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
            +V++   G Y C ASN      S    L VQ              PP  +     S  +
Sbjct: 258 LKVTKGDAGQYTCYASNVAG-KDSCSAQLGVQ-------------EPPRFIKKLEPS-RI 302

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN----------------------- 98
           V++  +    C   GSP   ++W ++  E+  +S                          
Sbjct: 303 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 362

Query: 99  -------------------TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREK 139
                                PP+ +     +   +G  + LEC  +  P     W ++K
Sbjct: 363 TCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDK 422

Query: 140 GDMIANGKT 148
            ++ +  K 
Sbjct: 423 RELRSGKKY 431

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 67.5 bits (165), Expect = 4e-14
 Identities = 33/190 (17%), Positives = 55/190 (28%), Gaps = 62/190 (32%)

Query: 2   TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
             +S E  G Y C A N  G   S S    L V+              PP     P    
Sbjct: 352 YNLSVEDSGDYTCEAHNAAG---SASSSTSLKVK-------------EPPVFRKKP--HP 393

Query: 60  IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS--------------FNNT------ 99
           +   +G++V + C   G+PP  + W ++  E+ +                  N       
Sbjct: 394 VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIG 453

Query: 100 ----------------------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR 137
                                  PP        I    G+++ L+   E        W +
Sbjct: 454 EYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFK 513

Query: 138 EKGDMIANGK 147
           +KG+++    
Sbjct: 514 DKGEIVRESD 523

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 53.7 bits (129), Expect = 3e-09
 Identities = 15/135 (11%), Positives = 32/135 (23%), Gaps = 47/135 (34%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT-------- 99
           PP  ++      +    G  ++++C   G+P   I W +E  ++ +              
Sbjct: 5   PPYFIEPL--EHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62

Query: 100 -------------------------------------VPPIVKIPSQLIGAHEGQQLVLE 122
                                                +PP      + +    G  +  E
Sbjct: 63  LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122

Query: 123 CISEAYPKSVNYWTR 137
           C           W +
Sbjct: 123 CRINGSEPLQVSWYK 137

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 71.9 bits (176), Expect = 2e-16
 Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSK-RIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
           + V+R+  G Y C+ S     +  +  I L V              +PP           
Sbjct: 70  SSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL-------------VPPSKPTIS--VPS 114

Query: 61  MVREGSNVSMRC-AASGSPPPSIMWRREGGEMITNS 95
            V  G+   + C    GSPP    W ++G  M+T  
Sbjct: 115 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTAD 150

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 61.5 bits (149), Expect = 1e-12
 Identities = 24/151 (15%), Positives = 37/151 (24%), Gaps = 53/151 (35%)

Query: 54  YPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT-------------- 99
           Y   SD+ V E  ++ + C  SG   P + W+   G        N+              
Sbjct: 5   YTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS 64

Query: 100 --------------------------------------VPPIVKIPSQLIGAHEGQQLVL 121
                                                 VPP     S       G + VL
Sbjct: 65  SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVL 124

Query: 122 ECIS-EAYPKSVNYWTREKGDMIANGKTPFQ 151
            C   +  P S   W ++   M+       +
Sbjct: 125 TCSEHDGSPPSEYSWFKDGISMLTADAKKTR 155

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 71.4 bits (175), Expect = 2e-16
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 12/94 (12%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
             +++   G Y C         +  R ++++             ++PP I     S +  
Sbjct: 62  LNINKSDEGIYRCEGRVEARGEIDFRDIIVIV------------NVPPAISMPQKSFNAT 109

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
              G  ++  C ASGSP P+I W R G  +  N 
Sbjct: 110 AERGEEMTFSCRASGSPEPAISWFRNGKLIEENE 143

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 55.9 bits (135), Expect = 1e-10
 Identities = 22/144 (15%), Positives = 39/144 (27%), Gaps = 48/144 (33%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG------------------- 88
                +    S    ++G +  + C  S SP P++ W                       
Sbjct: 2   MLTFREVV--SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 59

Query: 89  ----------------------GEMITNSFNNTV--PPIVKIPSQL--IGAHEGQQLVLE 122
                                 GE+        V  PP + +P +     A  G+++   
Sbjct: 60  QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 119

Query: 123 CISEAYPKSVNYWTREKGDMIANG 146
           C +   P+    W R  G +I   
Sbjct: 120 CRASGSPEPAISWFRN-GKLIEEN 142

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 73.7 bits (181), Expect = 2e-16
 Identities = 34/187 (18%), Positives = 50/187 (26%), Gaps = 51/187 (27%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
           + +     G Y C A N           + +                   L  P  S+++
Sbjct: 182 SRLQPGDSGVYRCSARNPASTRTGNEAEVRIL-------SDPGLHRQLYFLQRP--SNVI 232

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMI----------------------------- 92
             EG +  + C  SG PPPS  W R    +                              
Sbjct: 233 AIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTC 292

Query: 93  --TNSFNNT---------VPP-IVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKG 140
             T    N          VPP  +  PS L  A+E   +  EC     P     W +   
Sbjct: 293 VVTYKNENISASAELTVLVPPWFLNHPSNLY-AYESMDIEFECAVSGKPVPTVNWMKNGD 351

Query: 141 DMIANGK 147
            +I +  
Sbjct: 352 VVIPSDY 358

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 32/196 (16%), Positives = 48/196 (24%), Gaps = 65/196 (33%)

Query: 2   TEVSREHMGAYLCIASNGVP-PSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
           +   +   G Y C AS G     +S+   ++V               P   L       I
Sbjct: 87  SRHHKPDEGLYQCEASLGDSGSIISRTAKVMVA-------------GPLRFLSQT--ESI 131

Query: 61  MVREGSNVSMRCAASGSPPPSIMWRREG-------------------------------- 88
               G  V ++C   G P P+I W++                                  
Sbjct: 132 TAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGV 191

Query: 89  ---------GEMITNSFNNTV--------PPIVKIPSQLIGAHEGQQLVLECISEAYPKS 131
                         N     +                  + A EG+  VLEC    YP  
Sbjct: 192 YRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPP 251

Query: 132 VNYWTREKGDMIANGK 147
              W R +  +    K
Sbjct: 252 SFTWLRGEEVIQLRSK 267

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 49.8 bits (119), Expect = 4e-08
 Identities = 20/139 (14%), Positives = 36/139 (25%), Gaps = 51/139 (36%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGSPP-PSIMWRREGGEMITNSFNNT------- 99
               +  P  SD +   G NV + C+A      P I W+++G  +     +         
Sbjct: 21  SLHFVSEP--SDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGS 78

Query: 100 -----------------------------------------VPPIVKIPSQLIGAHEGQQ 118
                                                     P      ++ I A  G  
Sbjct: 79  LLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDT 138

Query: 119 LVLECISEAYPKSVNYWTR 137
           ++L+C     P    +W +
Sbjct: 139 VLLKCEVIGDPMPTIHWQK 157

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 71.8 bits (176), Expect = 2e-16
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 4/96 (4%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQC--QYFSKLYIYTSSMPPDILDYPTSSD 59
             V  +  G Y+C  +N      S+   L V    + F +     S     I   PT   
Sbjct: 70  NAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPT--S 127

Query: 60  IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
             +  GS + ++C A GSP P   W +    +   +
Sbjct: 128 QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET 163

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 56.4 bits (136), Expect = 1e-10
 Identities = 20/139 (14%), Positives = 32/139 (23%), Gaps = 51/139 (36%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGE----------------- 90
              I   P      V  G  V + C A+G P     W +   E                 
Sbjct: 18  GSKITVNP--ESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVK 75

Query: 91  -------MITNSF-------------------------NNTVPPIVKIPSQLIGAHEGQQ 118
                   + N+F                          +     + +         G  
Sbjct: 76  DAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGST 135

Query: 119 LVLECISEAYPKSVNYWTR 137
           LVL+C++   P     W +
Sbjct: 136 LVLQCVAVGSPIPHYQWFK 154

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 71.0 bits (174), Expect = 3e-16
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 16/100 (16%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
             V R   G Y C   +G    +S+ + L V+               P     P   D+ 
Sbjct: 65  KSVERSDAGRYWCQVEDGGETEISQPVWLTVE-------------GVPFFTVEP--KDLA 109

Query: 62  VREGSNVSMRCAASGSPPP-SIMWRREGGEMITNSFNNTV 100
           V   +   + C A G P P +I+W R   ++   + + +V
Sbjct: 110 VPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSV 149

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 21/148 (14%), Positives = 37/148 (25%), Gaps = 48/148 (32%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG------------------- 88
              ++  P    + V +G  V + C+  G   P I W ++G                   
Sbjct: 2   GLKLMGAP--VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI 59

Query: 89  ------------------------GEMITNSFNNTV--PPIVKIPSQLIGAHEGQQLVLE 122
                                      I+     TV   P   +  + +         L 
Sbjct: 60  GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLS 119

Query: 123 CISEAYPKSVNY-WTREKGDMIANGKTP 149
           C +   P+ V   W R    +     +P
Sbjct: 120 CEAVGPPEPVTIVWWRGTTKIGGPAPSP 147

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 72.2 bits (177), Expect = 4e-16
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 12/94 (12%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
                   G Y C+A+N      S    L V+            ++ P     P      
Sbjct: 169 ESSEETDQGKYECVATNSAGVRYSSPANLYVR----------VQNVAPRFSILP--MSHE 216

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           +  G NV++ C A GSP P + W +   ++    
Sbjct: 217 IMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPED 250

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 65.6 bits (160), Expect = 9e-14
 Identities = 33/192 (17%), Positives = 51/192 (26%), Gaps = 55/192 (28%)

Query: 5   SREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVRE 64
           +      Y C+A N V   ++    L V  +          S  P+I   P     +V  
Sbjct: 72  TPRDENVYECVAQNSVG-EITVHAKLTVLREDQLP------SGFPNIDMGP--QLKVVER 122

Query: 65  GSNVSMRCAASGSPPPSIMWRREGGE------------------MITNSFNN-------- 98
               +M CAASG+P P I W ++                      I +S           
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV 182

Query: 99  --------------------TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTRE 138
                                V P   I         G  + + C++   P     W + 
Sbjct: 183 ATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQG 242

Query: 139 KGDMIANGKTPF 150
             D+      P 
Sbjct: 243 AEDLTPEDDMPV 254

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 54.4 bits (131), Expect = 9e-10
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 44  TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPP 102
           T   PP  +  P   D +   G   S  C A+G P P + W ++G ++ +  F      
Sbjct: 2   TGEEPPRFIKEP--KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFD 58

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 69.9 bits (171), Expect = 1e-15
 Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 11/126 (8%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
           M  V     G Y C+  N    S++    L V           +   P      P  ++ 
Sbjct: 80  MESVVPSDKGNYTCVVENEYG-SINHTYHLDVV--------ERSRHRPILQAGLP--ANA 128

Query: 61  MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLV 120
               G +V   C       P I W +   +  +    + +P +  +    I +   + L 
Sbjct: 129 STVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLA 188

Query: 121 LECISE 126
           L  ++E
Sbjct: 189 LFNVTE 194

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 17/145 (11%), Positives = 35/145 (24%), Gaps = 50/145 (34%)

Query: 44  TSSMPPDILDYPT--SSDIMVREGSNVSMRCAASGSPPPSIMWRREGGE----------- 90
            +   P   +          V   + V  RC A G+P P++ W + G E           
Sbjct: 11  NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK 70

Query: 91  --------MITN----------------------SFNNTV-------PPIVKIPSQLIGA 113
                   ++ +                      +++  V       P +          
Sbjct: 71  VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANAST 130

Query: 114 HEGQQLVLECISEAYPKSVNYWTRE 138
             G  +   C   +  +    W + 
Sbjct: 131 VVGGDVEFVCKVYSDAQPHIQWIKH 155

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 71.9 bits (176), Expect = 1e-15
 Identities = 31/180 (17%), Positives = 51/180 (28%), Gaps = 52/180 (28%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
            +   E  G YLC+ +N V    S   +L V               P      P      
Sbjct: 311 KDAVVEDSGKYLCVVNNSVG-GESVETVLTVT-------------APLSAKIDP--PTQT 354

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS-------------------------- 95
           V  G      C  +G+P  ++ W ++G  +  +                           
Sbjct: 355 VDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRES 414

Query: 96  ---------FNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG 146
                         PP+++   Q      G  + L+C++   P     W  + G  IAN 
Sbjct: 415 AEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELD-GKKIANN 473

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 65.3 bits (159), Expect = 2e-13
 Identities = 31/193 (16%), Positives = 51/193 (26%), Gaps = 61/193 (31%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
             V +E  G Y C   N    S      L +               PP I       +  
Sbjct: 394 ESVKKEDKGMYQCFVRNDRE-SAEASAELKLG----------GRFDPPVIRQAF--QEET 440

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMI----------------------------- 92
           +  G +V ++C A G+P P I W  +G ++                              
Sbjct: 441 MEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHAN 500

Query: 93  ---------TNSFNNT---------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY 134
                     +                P ++   +      G+ L++ C    YP     
Sbjct: 501 DGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEK-KAIVAGETLIVTCPVAGYPIDSIV 559

Query: 135 WTREKGDMIANGK 147
           W R+   +  N K
Sbjct: 560 WERDNRALPINRK 572

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 65.0 bits (158), Expect = 3e-13
 Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 16/107 (14%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
             V   H G + C A N           L V              +PP  +  PT  D  
Sbjct: 682 EAVEASHAGNFTCHARNLAG-HQQFTTPLNVY-------------VPPRWILEPT--DKA 725

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPS 108
             +GS+  + C A G P P + W++  G+      +      +++  
Sbjct: 726 FAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEE 772

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 64.6 bits (157), Expect = 4e-13
 Identities = 34/180 (18%), Positives = 47/180 (26%), Gaps = 60/180 (33%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
           T V     G Y CIA + V         L V                P I          
Sbjct: 495 TSVHANDGGLYKCIAKSKVG-VAEHSAKLNVY-------------GLPYIR---QMEKKA 537

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS-----FNNT----------------- 99
           +  G  + + C  +G P  SI+W R+   +  N       N T                 
Sbjct: 538 IVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTC 597

Query: 100 --------------------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVN-YWTRE 138
                               +P I+    +   A  GQ L L C        +N  WT +
Sbjct: 598 VAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLD 657

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 61.9 bits (150), Expect = 4e-12
 Identities = 26/202 (12%), Positives = 48/202 (23%), Gaps = 68/202 (33%)

Query: 1   MTEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSS 58
           M     + +  +  +A    G     +       +               P  L  P ++
Sbjct: 3   MPNERLKWLMLFAAVALIACGSQTLAANPPDADQK--------------GPVFLKEP-TN 47

Query: 59  DIMVREGSNVSMRCAASGSPPPSIMWRREGGEMI-------------------------- 92
            I     +   + C ASG+P P I+W R  G  +                          
Sbjct: 48  RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYR 107

Query: 93  ------------TNSF----------NNTVPPIVKIPSQLIGAHEGQQLVLECISEAY-- 128
                        N F             V    +          G   V++C+  ++  
Sbjct: 108 QEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVA 167

Query: 129 -PKSVNYWTREKGDMIANGKTP 149
               V  W  ++ +    G   
Sbjct: 168 DFVEVVSWHTDEEENYFPGAEY 189

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 61.5 bits (149), Expect = 5e-12
 Identities = 28/186 (15%), Positives = 51/186 (27%), Gaps = 58/186 (31%)

Query: 6   REHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREG 65
                 Y C+A N    S    + + V              + P I+ +    +   + G
Sbjct: 589 NSDQATYTCVAKNQEGYSARGSLEVQVM-------------VLPRIIPFAFE-EGPAQVG 634

Query: 66  SNVSMRCAASGSPPP-SIMWRREGGEM--------------------------------- 91
             +++ C+  G   P +I W  +G  +                                 
Sbjct: 635 QYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTC 694

Query: 92  -ITNSFNN---------TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGD 141
              N   +          VPP   +        +G    +EC ++ +PK    W +  GD
Sbjct: 695 HARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGD 754

Query: 142 MIANGK 147
                K
Sbjct: 755 TPGEYK 760

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 60.7 bits (147), Expect = 8e-12
 Identities = 25/175 (14%), Positives = 39/175 (22%), Gaps = 53/175 (30%)

Query: 10  GAYLCIASN--GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSN 67
            +Y C   +       +S     +V       +    SS  P ++             S 
Sbjct: 213 KSYQCRTKHRLTGETRLSATKGRLV-------ITEPISSAVPKVVSLAKFDMKTYSGSST 265

Query: 68  VSMRCAASGSPPPSIMWRREGGEMITNSF------------------------------- 96
           +++ C A G P P   W +                                         
Sbjct: 266 MALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVV 325

Query: 97  NN-------------TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTRE 138
           NN             T P   KI         G+  V  C     P     W ++
Sbjct: 326 NNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD 380

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 53.4 bits (128), Expect = 3e-09
 Identities = 20/205 (9%), Positives = 41/205 (20%), Gaps = 74/205 (36%)

Query: 4   VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
               H   Y C+A N     +S+ + +                +          +   V 
Sbjct: 107 RQEVHAQVYACLARNQFGSIISRDVHVRA-------------VVAQYYEADV--NKEHVI 151

Query: 64  EGSNVSMRC---AASGSPPPSIMWRREGGEMI---------------------------- 92
            G++  ++C   +        + W  +  E                              
Sbjct: 152 RGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDG 211

Query: 93  --------TNSFNN-------------TVPPIVKIPSQLIG-------AHEGQQLVLECI 124
                    +                 T P    +P  +               + L C 
Sbjct: 212 YKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCP 271

Query: 125 SEAYPKSVNYWTREKGDMIANGKTP 149
           ++ YP  V  W +            
Sbjct: 272 AQGYPVPVFRWYKFIEGTTRKQAVV 296

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 71.4 bits (175), Expect = 1e-15
 Identities = 31/187 (16%), Positives = 54/187 (28%), Gaps = 48/187 (25%)

Query: 2   TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
            +V +  +G Y C+ +N       +     LI++       Y       P I        
Sbjct: 162 AKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEY------EPKIE-VQFPET 214

Query: 60  IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS-----FNNT--------------- 99
           +   +G+ V + C A G+P P+I+WRR  G+ I         N                 
Sbjct: 215 VPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYE 274

Query: 100 -------------------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKG 140
                                P        I     + +  EC +   PK    W +   
Sbjct: 275 CVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGD 334

Query: 141 DMIANGK 147
            ++   +
Sbjct: 335 PLLTRDR 341

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 66.8 bits (163), Expect = 5e-14
 Identities = 30/195 (15%), Positives = 45/195 (23%), Gaps = 66/195 (33%)

Query: 4   VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
              +  G Y CIA+N     VS+   L              + +          S + VR
Sbjct: 70  NKTQDAGTYQCIATNSFGTIVSREAKLQF------------AYLENFKTRTR--STVSVR 115

Query: 64  EGSNVSMRCAA-SGSPPPSIMWRREGGEMITNSFNNTV---------------------- 100
            G  + + C     S   S  W         ++                           
Sbjct: 116 RGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCV 175

Query: 101 -----------------------------PPIVKIPSQLIGAHEGQQLVLECISEAYPKS 131
                                        P I     + + A +G  + LEC +   P  
Sbjct: 176 VTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVP 235

Query: 132 VNYWTREKGDMIANG 146
              W R  G  IA  
Sbjct: 236 TILWRRADGKPIARK 250

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 19/136 (13%), Positives = 31/136 (22%), Gaps = 45/136 (33%)

Query: 48  PPDILDYPTS-SDIMVREGSNVSMRCAASGSPPPSIMWRREGGE---------------- 90
            P  +  P+     +  E   V + C   G+P P I W+  G +                
Sbjct: 5   GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64

Query: 91  MITNSFNN---------------------------TVPPIVKIPSQLIGAHEGQQLVLEC 123
           +I N                                +          +    GQ +VL C
Sbjct: 65  LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC 124

Query: 124 -ISEAYPKSVNYWTRE 138
                  +    W   
Sbjct: 125 GPPPHSGELSYAWIFN 140

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 71.4 bits (175), Expect = 1e-15
 Identities = 26/183 (14%), Positives = 52/183 (28%), Gaps = 42/183 (22%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
            +     +G Y C A++ +            Q      L    +      +     +D  
Sbjct: 163 AKTEASDLGNYSCFATSHIDFITKSVFSKFSQ----LSLAAEDARQYAPSIKAKFPADTY 218

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN----------------------- 98
              G  V++ C A G+P P I WR+  G   +   ++                       
Sbjct: 219 ALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAEN 278

Query: 99  -----------TV---PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144
                       +   P  + + +    A  G  L   C++   P+    W R+   + +
Sbjct: 279 IKGRDTYQGRIIIHAQPDWLDVITDTE-ADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS 337

Query: 145 NGK 147
             +
Sbjct: 338 QNR 340

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 63.0 bits (153), Expect = 1e-12
 Identities = 28/197 (14%), Positives = 44/197 (22%), Gaps = 69/197 (35%)

Query: 4   VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
           V  +  G+Y C+A+N     VS+   L                +     +      + + 
Sbjct: 69  VKAKDAGSYQCVATNARGTVVSREASLRF------------GFLQEFSAEER--DPVKIT 114

Query: 64  EGSNVSMRCAA-SGSPPPSIMWRREGGEMI------------------------------ 92
           EG  V   C+     P  S  W                                      
Sbjct: 115 EGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYS 174

Query: 93  ---TNSFNNT---------------------VPPIVKIPSQLIGAHEGQQLVLECISEAY 128
              T+  +                        P I         A  GQ + LEC +   
Sbjct: 175 CFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGN 234

Query: 129 PKSVNYWTREKGDMIAN 145
           P     W +  G   + 
Sbjct: 235 PVPQIKWRKLDGSQTSK 251

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 22/140 (15%), Positives = 36/140 (25%), Gaps = 49/140 (35%)

Query: 46  SMPPDILDYPTSSDIMVREGS---NVSMRCAASGSPPPSIMWRREGGE------------ 90
           S  P   + P  +  +  EGS    V++ C A  +PP +  W+  G E            
Sbjct: 2   SYGPVFEEQP--AHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV 59

Query: 91  ----MITNSFNN---------------------------TVPPIVKIPSQLIGAHEGQQL 119
               +I+N                                +          +   EG  +
Sbjct: 60  AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGV 119

Query: 120 VLEC-ISEAYPKSVNYWTRE 138
           +  C     YP     W   
Sbjct: 120 MFTCSPPPHYPALSYRWLLN 139

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 69.0 bits (169), Expect = 2e-15
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 14/94 (14%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
             V++ + G Y   A+NG     +    L+V+            + PP+ +       + 
Sbjct: 68  PAVTKANSGRYSLKATNGSG-QATSTAELLVK----------AETAPPNFVQRL--QSMT 114

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           VR+GS V ++   +G P P + + R+ G  I +S
Sbjct: 115 VRQGSQVRLQVRVTGIPTPVVKFYRD-GAEIQSS 147

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 54.7 bits (132), Expect = 3e-10
 Identities = 25/150 (16%), Positives = 39/150 (26%), Gaps = 50/150 (33%)

Query: 45  SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGE-------------- 90
           ++  P          ++V EGS  +     SG P P + W R+G                
Sbjct: 2   TTQAPTFTQPL--QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFS 59

Query: 91  ------MITNSF---------------------------NNTVPPIVKIPSQLIGAHEGQ 117
                  I                                 T PP      Q +   +G 
Sbjct: 60  DGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGS 119

Query: 118 QLVLECISEAYPKSVNYWTREKGDMIANGK 147
           Q+ L+      P  V  + R+ G  I +  
Sbjct: 120 QVRLQVRVTGIPTPVVKFYRD-GAEIQSSL 148

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 68.7 bits (168), Expect = 3e-15
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 5   SREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVRE 64
           +      Y C+A NGV  +VS    L +           T +  P I   P     ++  
Sbjct: 73  AGRDDAPYECVAENGVGDAVSADATLTIY------EGDKTPAGFPVITQGP--GTRVIEV 124

Query: 65  GSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           G  V M C A G+P P+I W +     +  S
Sbjct: 125 GHTVLMTCKAIGNPTPNIYWIK-NQTKVDMS 154

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 58.3 bits (141), Expect = 2e-11
 Identities = 29/148 (19%), Positives = 46/148 (31%), Gaps = 55/148 (37%)

Query: 44  TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG--------------- 88
           T + PP+I+  P   +  VR G   S  CAA G PPPSI+WR+ G               
Sbjct: 2   TGAHPPEIIRKP--QNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQ 59

Query: 89  -----------------------------GEMITNSFNNTV---------PPIVKIPSQL 110
                                        G+ ++     T+          P++      
Sbjct: 60  PGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGT 119

Query: 111 IGAHEGQQLVLECISEAYPKSVNYWTRE 138
                G  +++ C +   P    YW + 
Sbjct: 120 RVIEVGHTVLMTCKAIGNPTPNIYWIKN 147

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 69.4 bits (169), Expect = 5e-15
 Identities = 26/133 (19%), Positives = 44/133 (33%), Gaps = 14/133 (10%)

Query: 1   MTEVSREHMGAYLCIASN---GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTS 57
           +  V+ +H G Y C AS    G    +++ I  I   +             P I+  P +
Sbjct: 166 VMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEE--------NKPTRPVIV-SPAN 216

Query: 58  SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQ 117
             + V  GS + + C  +G       W+   G +I             + +         
Sbjct: 217 ETMEVDLGSQIQLICNVTGQLSDIAYWKW-NGSVIDEDDPVLGEDYYSVENPANKRRSTL 275

Query: 118 QLVLECISEAYPK 130
             VL  ISE   +
Sbjct: 276 ITVLN-ISEIESR 287

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 50.5 bits (120), Expect = 3e-08
 Identities = 20/191 (10%), Positives = 40/191 (20%), Gaps = 67/191 (35%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
                E  G Y C+  N     +  +I                 + P    +        
Sbjct: 67  VPAKVEDSGHYYCVVRNSSY-CLRIKISAKFV-----------ENEPNLCYNAQAIFKQK 114

Query: 62  VREGSNVSMRC------AASGSPPPSIMWRREGGE------------------------- 90
           +    +  + C          +  P + W ++                            
Sbjct: 115 LPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHR 174

Query: 91  -----MITNSFN-------------------NTVPPIVKIPSQLIGAHEGQQLVLECISE 126
                  + ++                     T P IV   ++ +    G Q+ L C   
Sbjct: 175 GNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVT 234

Query: 127 AYPKSVNYWTR 137
                + YW  
Sbjct: 235 GQLSDIAYWKW 245

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 67.6 bits (165), Expect = 7e-15
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
             V     G Y C  S+           + +           T   P DI+      D+ 
Sbjct: 71  ANVEASDKGNYSCFVSSPSITKSVFSKFIPLI----PIPERTTKPYPADIVVQF--KDVY 124

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF 96
              G NV++ C A G+P P I WR+    M + + 
Sbjct: 125 ALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAE 159

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 46.0 bits (109), Expect = 6e-07
 Identities = 20/156 (12%), Positives = 36/156 (23%), Gaps = 56/156 (35%)

Query: 47  MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP--SIMWRREGGE-------------- 90
           + P   +     ++ V+EG  + + C      P   S  W                    
Sbjct: 7   LDPFPPEER--PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT 64

Query: 91  ----MITN----------------------------------SFNNTVPPIVKIPSQLIG 112
                I N                                        P  + +  + + 
Sbjct: 65  NGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY 124

Query: 113 AHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKT 148
           A  GQ + LEC +   P     W +    M +  + 
Sbjct: 125 ALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEI 160

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 69.2 bits (169), Expect = 8e-15
 Identities = 25/192 (13%), Positives = 49/192 (25%), Gaps = 52/192 (27%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
           T+     +  Y+C A N         +   ++               P         D+M
Sbjct: 169 TKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKG---EPVPQYVS--KDMM 223

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREG--------------------------------- 88
            + G    + C    +P     + + G                                 
Sbjct: 224 AKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEG 283

Query: 89  ----------GEMITNSFNNTV---PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYW 135
                     G+   +S   TV   P   + P ++I   +GQ + + C     P     W
Sbjct: 284 VYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVW 343

Query: 136 TREKGDMIANGK 147
           +      ++ G+
Sbjct: 344 SHN-AKPLSGGR 354

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 53.4 bits (128), Expect = 3e-09
 Identities = 14/95 (14%), Positives = 23/95 (24%), Gaps = 16/95 (16%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
                   G Y C A      + S+ I                 +            +  
Sbjct: 67  LRPQASDEGHYQCFAETPAGVASSRVISFRK-------------TYLIASPAKT--HEKT 111

Query: 62  VREGSNVSMRC-AASGSPPPSIMWRREGGEMITNS 95
             EG    + C   +  P P I W++       N+
Sbjct: 112 PIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNA 146

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 50.3 bits (120), Expect = 3e-08
 Identities = 22/144 (15%), Positives = 40/144 (27%), Gaps = 46/144 (31%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGSPPP-SIMWRREGGE---------------- 90
            P + D P  ++++ RE +   + C   G+       W+++G                  
Sbjct: 6   YPVLKDQP--AEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 63

Query: 91  -MITN-------------------------SFNNTVPPIVKIPSQLIGAHEGQQLVLEC- 123
            +                            SF  T        +      EG+   L+C 
Sbjct: 64  LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCV 123

Query: 124 ISEAYPKSVNYWTREKGDMIANGK 147
           +  AYPK +  W +       N  
Sbjct: 124 LPNAYPKPLITWKKRLSGADPNAD 147

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 66.8 bits (163), Expect = 9e-15
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 16/95 (16%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
           T +     G Y C+   G    VS+   + ++               P  L+ P   D  
Sbjct: 73  TSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE-------------GLPYFLEEP--EDRT 117

Query: 62  VREGSNVSMRCAASGSPPP-SIMWRREGGEMITNS 95
           V   +  ++ C A G P P  ++W ++   + T  
Sbjct: 118 VAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP 152

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 3/57 (5%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAA-SGSPPPSIMWRREGGEMITNSFNNTVPPI 103
               +  P   +I    G   ++RC       PP + W R+G  +       T  P+
Sbjct: 2   ESPFVGNP--GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPL 56

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 66.6 bits (163), Expect = 1e-14
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 14/94 (14%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
               +E  G Y CIA+N V   V     L++Q            + P     YP      
Sbjct: 68  MTEEQEDEGVYTCIATNEVG-EVETSSKLLLQ------------ATPQFHPGYPLKEKYY 114

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
              GS + +     G P P++ W   G +++ NS
Sbjct: 115 GAVGSTLRLHVMYIGRPVPAMTWFH-GQKLLQNS 147

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 22/145 (15%), Positives = 31/145 (21%), Gaps = 48/145 (33%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGE----------------- 90
            P I       D+  + G    + C   G P P I W R G E                 
Sbjct: 7   APGIRKEM--KDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64

Query: 91  -MITNSF-----------NNTV--------------PPIVKIP--SQLIGAHEGQQLVLE 122
             +                N V              P         +      G  L L 
Sbjct: 65  LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH 124

Query: 123 CISEAYPKSVNYWTREKGDMIANGK 147
            +    P     W      ++ N +
Sbjct: 125 VMYIGRPVPAMTWFHG-QKLLQNSE 148

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 67.7 bits (165), Expect = 2e-14
 Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 11/94 (11%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
                     Y C A  G    +S  I L VQ              PP +   P  ++++
Sbjct: 149 HRAKFIQSQDYQCSALMGGRKVMSISIRLKVQ---------KVIPGPPALTLVP--AELV 197

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
              G    + C+AS       ++ +     +   
Sbjct: 198 RIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIP 231

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 66.5 bits (162), Expect = 5e-14
 Identities = 19/193 (9%), Positives = 47/193 (24%), Gaps = 61/193 (31%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
              + ++ G Y C          S  I L V+              P    +   + +++
Sbjct: 56  NNATFQNTGTYRCTEPGDPL-GGSAAIHLYVK-------------DPARPWN-VLAQEVV 100

Query: 62  VREGSNVSMRCAASGSPP-PSIMWRREGGEMITNSFNNTV-------------------- 100
           V E  +  + C  +       +   R  G  +    N +                     
Sbjct: 101 VFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQ 160

Query: 101 -------------------------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYW 135
                                    PP + +    +    G+   + C + +   + + +
Sbjct: 161 CSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVF 220

Query: 136 TREKGDMIANGKT 148
            +     +A  + 
Sbjct: 221 LQHNNTKLAIPQQ 233

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 40.3 bits (94), Expect = 7e-05
 Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 37/136 (27%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGS------PPPSIMWRREGGE---MITN-SFN 97
            P I   P+  +++V+ G+ V++RC  +GS      P P      +G        N +F 
Sbjct: 4   IPVIE--PSVPELVVKPGATVTLRCVGNGSVEWDGPPSPHWTLYSDGSSSILSTNNATFQ 61

Query: 98  NT-----------------------VPP-IVKIPSQLIGAHEGQQLVLECISEAYPKSVN 133
           NT                        P     + +Q +   E Q  +L C+         
Sbjct: 62  NTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAG 121

Query: 134 Y-WTREKGDMIANGKT 148
               R +G  +     
Sbjct: 122 VSLVRVRGRPLMRHTN 137

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 68.0 bits (166), Expect = 2e-14
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 16/96 (16%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
           T VS E  G Y C+ASN +  S+   I + V+               P  LD P   +++
Sbjct: 280 TNVSEEDSGEYFCLASNKMG-SIRHTISVRVK-------------AAPYWLDEP--KNLI 323

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN 97
           +  G +  + C A+G+P P++ W   G  + +   N
Sbjct: 324 LAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPN 359

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 67.6 bits (165), Expect = 3e-14
 Identities = 33/171 (19%), Positives = 47/171 (27%), Gaps = 48/171 (28%)

Query: 10  GAYLCIASN--GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSN 67
             Y C A               L V               P  +    T+S  MV  G +
Sbjct: 185 TDYSCNARFHFTHTIQQKNPFTLKVLTTR-----GVAERTPSFMYPQGTASSQMVLRGMD 239

Query: 68  VSMRCAASGSPPPSIMWRREGGEMITNS-----FNNT----------------------- 99
           + + C ASG P P I W ++GG++ ++      FN                         
Sbjct: 240 LLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMG 299

Query: 100 -----------VPP-IVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTRE 138
                        P  +  P  LI    G+   L C +   PK    W   
Sbjct: 300 SIRHTISVRVKAAPYWLDEPKNLI-LAPGEDGRLVCRANGNPKPTVQWMVN 349

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 59.9 bits (145), Expect = 2e-11
 Identities = 38/200 (19%), Positives = 59/200 (29%), Gaps = 69/200 (34%)

Query: 4   VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
              E+ G Y C A N    ++S RI L V             S  P          ++V+
Sbjct: 84  RPEEYEGEYQCFARNKFGTALSNRIRLQV-------------SKSPLWPKENLD-PVVVQ 129

Query: 64  EGSNVSMRCAA-SGSPPPSIMWRREGGEMI------------------------------ 92
           EG+ ++++C    G P P I W     E I                              
Sbjct: 130 EGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSC 189

Query: 93  --TNSFNNTV-------------------PPIVKIP---SQLIGAHEGQQLVLECISEAY 128
                F +T+                    P    P   +       G  L+LECI+   
Sbjct: 190 NARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGV 249

Query: 129 PKSVNYWTREKGDMIANGKT 148
           P     W ++ GD+ ++   
Sbjct: 250 PTPDIAWYKKGGDLPSDKAK 269

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 55.6 bits (134), Expect = 5e-10
 Identities = 27/149 (18%), Positives = 37/149 (24%), Gaps = 50/149 (33%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGE----------------- 90
           PP I     + D +V    N+ + C A G+P PS  W R                     
Sbjct: 16  PPTITKQS-AKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGT 74

Query: 91  -MITNSFNNT------------------------------VPPIVKIPSQLIGAHEGQQL 119
            +I                                      P   K     +   EG  L
Sbjct: 75  LVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPL 134

Query: 120 VLEC-ISEAYPKSVNYWTREKGDMIANGK 147
            L+C      P  V +W     + I   K
Sbjct: 135 TLQCNPPPGLPSPVIFWMSSSMEPITQDK 163

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 67.7 bits (165), Expect = 3e-14
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 17/94 (18%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
            +   E  G YLC+ +N V    S   +L V               P      P      
Sbjct: 275 KDAVVEDSGKYLCVVNNSVG-GESVETVLTVT-------------APLSAKIDP--PTQT 318

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           V  G      C  +G+P  ++ W ++ G+ I +S
Sbjct: 319 VDFGRPAVFTCQYTGNPIKTVSWMKD-GKAIGHS 351

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 58.0 bits (140), Expect = 6e-11
 Identities = 26/180 (14%), Positives = 39/180 (21%), Gaps = 55/180 (30%)

Query: 10  GAYLCIASN--GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSN 67
            +Y C   +       +S     +V  +          S             + +     
Sbjct: 178 KSYQCRTKHRLTGETRLSATKGRLVITE--------PISSSAPRTPALVQKPLELMVAHT 229

Query: 68  VSMRCAASGSPPPSIMWRREGGEMITNSF------------------------------- 96
           +S+ C A G P PS  W +                                         
Sbjct: 230 ISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVV 289

Query: 97  NN-------------TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI 143
           NN             T P   KI         G+  V  C     P     W ++ G  I
Sbjct: 290 NNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD-GKAI 348

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 53.8 bits (129), Expect = 2e-09
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           P  L  P ++ I     +   + C ASG+P P I+W R  G  + + 
Sbjct: 3  GPVFLKEP-TNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDV 49

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 52.2 bits (125), Expect = 6e-09
 Identities = 16/204 (7%), Positives = 37/204 (18%), Gaps = 73/204 (35%)

Query: 5   SREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVRE 64
              H   Y C+A N     +S+ + +                +          +   V  
Sbjct: 73  QEVHAQVYACLARNQFGSIISRDVHVRA-------------VVAQYYEADV--NKEHVIR 117

Query: 65  GSNVSMRCAA---SGSPPPSIMWRREGGEMITNS----------------FNNTVP---- 101
           G++  ++C            + W  +  E                          P    
Sbjct: 118 GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGY 177

Query: 102 -----------------------------------PIVKIPSQLIGAHEGQQLVLECISE 126
                                                  +  + +       + L C ++
Sbjct: 178 KSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQ 237

Query: 127 AYPKSVNYWTREKGDMIANGKTPF 150
            +P     W +             
Sbjct: 238 GFPAPSFRWYKFIEGTTRKQAVVL 261

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 65.9 bits (161), Expect = 3e-14
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 16/96 (16%)

Query: 2   TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
             V+ +    Y   A+N  G   SVS    L V+        +      P  L+      
Sbjct: 67  ASVTDDDATVYQVRATNQGG---SVSGTASLEVE--------VPAKIHLPKTLEGM--GA 113

Query: 60  IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           +    G  VS++   SG P P I W++ G ++I N+
Sbjct: 114 VHALRGEVVSIKIPFSGKPDPVITWQK-GQDLIDNN 148

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 57.8 bits (140), Expect = 3e-11
 Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 52/151 (34%)

Query: 46  SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN-------- 97
           +M P   +     ++ VR  SN ++ C  +G P P + W R+G E+I +           
Sbjct: 2   AMAPHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKG 59

Query: 98  -----------------------NT-------------VPPIVKIPS-----QLIGAHEG 116
                                  N              VP  + +P        + A  G
Sbjct: 60  GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 119

Query: 117 QQLVLECISEAYPKSVNYWTREKGDMIANGK 147
           + + ++      P  V  W +   D+I N  
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKG-QDLIDNNG 149

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 66.6 bits (162), Expect = 5e-14
 Identities = 19/104 (18%), Positives = 29/104 (27%), Gaps = 9/104 (8%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYP----- 55
           +   S E  GAY C             + +               +    +         
Sbjct: 65  VLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTR 124

Query: 56  ----TSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
                   + V   + V  RC A+G+P PSI W + G E     
Sbjct: 125 PERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH 168

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 64.3 bits (156), Expect = 3e-13
 Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 13/129 (10%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
           M  V     G Y C+  N    S+ +   L V  +        +   P      P  ++ 
Sbjct: 184 MESVVPSDRGNYTCVVENKFG-SIRQTYTLDVLER--------SPHRPILQAGLP--ANQ 232

Query: 61  MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVP--PIVKIPSQLIGAHEGQQ 118
               GS+V   C       P I W +      +    +  P   ++K         E + 
Sbjct: 233 TAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEV 292

Query: 119 LVLECISEA 127
           L L  ++  
Sbjct: 293 LSLHNVTFE 301

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 44.2 bits (104), Expect = 4e-06
 Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRC-AASGSPPPSIMWRREGGEMITNS 95
          + +P           ++   G  V + C    G P    +W ++G  ++ + 
Sbjct: 5  AEVPGPEPGQQ--EQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSE 54

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 65.2 bits (159), Expect = 6e-14
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
              SR   G Y+C+A N +  +VS    L V              +  D    P  SD+M
Sbjct: 77  GRKSRPDEGVYVCVARNYLGEAVSHDASLEVA------------ILRDDFRQNP--SDVM 122

Query: 62  VREGSNVSMRC-AASGSPPPSIMWRREGGEMITNSFNNTVP 101
           V  G    M C    G P P+I W+++G  +       T+ 
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR 163

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 53.3 bits (128), Expect = 2e-09
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
            PP I+++P  SD++V +G   ++ C A G P P+I W + G  + T+ 
Sbjct: 7  DFPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDK 54

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 66.4 bits (162), Expect = 7e-14
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 16/97 (16%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
            +V     G Y C A++ +     K + L ++               P  +   T     
Sbjct: 68  KDVKLSDSGRYDCEAASRIG-GHQKSMYLDIE-------------YAPKFISNQT--IYY 111

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN 98
             EG+ +++ C    +PP SI WRR+   +   +  N
Sbjct: 112 SWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTN 148

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 46.3 bits (110), Expect = 7e-07
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 59  DIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQL 110
           +    E   V++ C A G P P I W+R          + ++   +++  Q 
Sbjct: 9   NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 64.8 bits (158), Expect = 9e-14
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 5   SREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVRE 64
           +      Y C+ASN V   +S    L V  +             P I   P     +V  
Sbjct: 72  TPRDEAIYECVASNNVG-EISVSTRLTVLREDQIP------RGFPTIDMGPQ--LKVVER 122

Query: 65  GSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV 100
               +M CAASG+P P I W ++   + T++ N  +
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRI 158

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 54.4 bits (131), Expect = 6e-10
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF 96
          T   PP     P   D     G   S  C A+G P P I+W ++G ++    F
Sbjct: 2  TGETPPRFTRTP--VDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRF 52

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 65.9 bits (160), Expect = 1e-13
 Identities = 20/180 (11%), Positives = 37/180 (20%), Gaps = 51/180 (28%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
           + V+R   G Y C +S       S+  ++ +                  I    +S D  
Sbjct: 295 SSVARNDTGYYTCSSSK----HPSQSALVTIV-------------EKGFINATNSSEDYE 337

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITN--------------------------- 94
           + +             P     W                                     
Sbjct: 338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHA 397

Query: 95  -----SFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKTP 149
                 F       ++   Q++   E       C S+ YP     W +         +  
Sbjct: 398 ENDDAQFTKMFTLNIRRKPQVL--AEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEI 455

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 61.3 bits (148), Expect = 6e-12
 Identities = 17/119 (14%), Positives = 33/119 (27%), Gaps = 24/119 (20%)

Query: 3   EVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMV 62
              +   G Y+  A N      +K   L ++               P +          +
Sbjct: 384 CNHKHQPGEYIFHAENDDA-QFTKMFTLNIRR-------------KPQV----------L 419

Query: 63  REGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVL 121
            E S     C + G P PS  W++   +    +   T     +  ++ +         L
Sbjct: 420 AEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTL 478

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 57.0 bits (137), Expect = 2e-10
 Identities = 17/193 (8%), Positives = 43/193 (22%), Gaps = 65/193 (33%)

Query: 4   VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
           +         C A N +    ++   + +                P      T   + ++
Sbjct: 198 LHELFGTDIRCCARNELGRECTRLFTIDLN-------------QTPQT----TLPQLFLK 240

Query: 64  EGSNVSMRCAASG-SPPPSIMWRREGGEMI------------------------------ 92
            G  + +RC A   +    + W  E   +                               
Sbjct: 241 VGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN 300

Query: 93  ---------TNSFNNT------VPPIVKIPS--QLIGAHEGQQLVLECISEAYPKSVNYW 135
                    +   + +          +   +  +     + ++       +AYP+    W
Sbjct: 301 DTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTW 360

Query: 136 TREKGDMIANGKT 148
           T  +       K 
Sbjct: 361 TFSRKSFPCEQKG 373

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 54.7 bits (131), Expect = 1e-09
 Identities = 16/175 (9%), Positives = 35/175 (20%), Gaps = 55/175 (31%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
            +++    G YL    +    + +    + ++                            
Sbjct: 108 LKMTETQAGEYLLFIQSEAT-NYTILFTVSIR-------------NTLLYTLRR--PYFR 151

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREG--------------------------------- 88
             E    ++ C +   P P + W                                     
Sbjct: 152 KMENQ-DALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCA 210

Query: 89  ----GEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY-WTRE 138
               G   T  F   +    +     +    G+ L + C +          W  E
Sbjct: 211 RNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELE 265

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 52.0 bits (124), Expect = 7e-09
 Identities = 17/184 (9%), Positives = 45/184 (24%), Gaps = 50/184 (27%)

Query: 3   EVSREHMGAYLCI----ASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSS 58
           E   + +    C+     +N      S    ++ +        +        + +   ++
Sbjct: 1   ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCAL-RPQSSGTVYE---AA 56

Query: 59  DIMVREGSNVSMRCAASGSPPPSIMWRREGGEMI-------------------------- 92
            + V   ++++++         S +W  +   +                           
Sbjct: 57  AVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAG 116

Query: 93  ------TNSFNNT---------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR 137
                  +   N             +  +        E Q   L CISE+ P+ +  W  
Sbjct: 117 EYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVL 175

Query: 138 EKGD 141
               
Sbjct: 176 CDSQ 179

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 65.1 bits (158), Expect = 2e-13
 Identities = 28/191 (14%), Positives = 43/191 (22%), Gaps = 65/191 (34%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
             +  E  G Y C+       S S  I L V                P          + 
Sbjct: 84  FGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL-------------AKPQN--TAEVQKVQ 128

Query: 62  VREGSNVSMRC-AASGSPPPSIMWRREGGEM-----ITNSFNNTV--------------- 100
           +        RC +  G PP  I W  + G M     +    + TV               
Sbjct: 129 LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVD 188

Query: 101 ----------------------------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSV 132
                                       P +              +  L C + + P+  
Sbjct: 189 GKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPT 248

Query: 133 NY-WTREKGDM 142
            Y W+   G +
Sbjct: 249 GYNWSTTMGPL 259

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 56.3 bits (135), Expect = 2e-10
 Identities = 11/93 (11%), Positives = 22/93 (23%), Gaps = 16/93 (17%)

Query: 1   MTEVSREHMGAYLCIASN-GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
           +   S+       C   +          + L V                P  +      +
Sbjct: 181 LVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYY--------------PPEVSISGYDN 226

Query: 60  IMVREGSNVSMRCAASGSPPP-SIMWRREGGEM 91
                 +  ++ C A  +P P    W    G +
Sbjct: 227 NWYLGQNEATLTCDARSNPEPTGYNWSTTMGPL 259

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 64.7 bits (157), Expect = 2e-13
 Identities = 18/177 (10%), Positives = 47/177 (26%), Gaps = 46/177 (25%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
           +T ++    G Y C  ++       +R  L +                  + +      I
Sbjct: 55  LTNLTGLDTGEYFCTHNDSRGLETDERKRLYIF---------VPDPTVGFLPNDAEELFI 105

Query: 61  MVREGSNVSMRCAASGSPPPSIMWRRE--------------------------------G 88
            + E + +++ C  +  P   +    +                                 
Sbjct: 106 FLTEITEITIPCRVTD-PQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGD 164

Query: 89  GEMITNSFNNTV----PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGD 141
            E+ ++++           V + +      +G+ + L CI          WT  + +
Sbjct: 165 REVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKE 221

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 63.4 bits (154), Expect = 3e-13
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 12/102 (11%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ--------CQYFSKLYIYTSSMPPDILD 53
            E +    G Y+    +G      K + L  Q         Q   +  I   +    +  
Sbjct: 64  NEPTPNDKGKYVMELFDGKT-GHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG 122

Query: 54  YPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
            P    + ++EG  +++ C   G PPP + W +   + +  +
Sbjct: 123 LP--DVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALAQT 161

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 62.7 bits (152), Expect = 3e-13
 Identities = 13/94 (13%), Positives = 26/94 (27%), Gaps = 24/94 (25%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
             +  E    Y+C   +             VQ                       +SD  
Sbjct: 73  KNLKIEDSDTYICEVEDQK---------EEVQLLV---------------FGLTANSDTH 108

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           + +G ++++   +     PS+  R   G+ I   
Sbjct: 109 LLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG 142

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 19/142 (13%), Positives = 30/142 (21%), Gaps = 55/142 (38%)

Query: 60  IMVREGSNVSMRCAASGSPPPSIMWRREGGE----------------------------- 90
           ++ ++G  V + C AS        W+                                  
Sbjct: 5   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64

Query: 91  ------MITN------------------SFNNTVPPIVKIPSQLIGAHEGQQLVLECISE 126
                 +I N                       V  +       +   +GQ L L   S 
Sbjct: 65  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL--LQGQSLTLTLESP 122

Query: 127 AYPKSVNYWTREKGDMIANGKT 148
                       +G  I  GKT
Sbjct: 123 PGSSPSVQCRSPRGKNIQGGKT 144

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 1/32 (3%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
           +++  +  G + C         V  +I ++V 
Sbjct: 148 SQLELQDSGTWTCTVLQNQ-KKVEFKIDIVVL 178

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 63.4 bits (154), Expect = 3e-13
 Identities = 24/128 (18%), Positives = 40/128 (31%), Gaps = 12/128 (9%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
           M  V     G Y C+  N    S+ +   L V  +        +   P      P  ++ 
Sbjct: 76  MESVVPSDRGNYTCVVENKFG-SIRQTYTLDVLER--------SPHRPILQAGLP--ANQ 124

Query: 61  MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQL-IGAHEGQQL 119
               GS+V   C       P I W +      +    +  P +  + S +        +L
Sbjct: 125 TAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRL 184

Query: 120 VLECISEA 127
            L  +SE 
Sbjct: 185 RLANVSER 192

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 48.4 bits (115), Expect = 1e-07
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 44 TSSMPPDILDYP--TSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
            +  P            + V   + V  RC A+G+P PSI W + G E     
Sbjct: 7  VDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH 60

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 63.0 bits (153), Expect = 5e-13
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 15/88 (17%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
                +  G Y C+A N V  +VS+   L +              +  D    P   D  
Sbjct: 74  QGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA------------VLRDDFRVEP--KDTR 119

Query: 62  VREGSNVSMRC-AASGSPPPSIMWRREG 88
           V +G    + C    G P P+++W ++G
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWIKDG 147

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 49.9 bits (119), Expect = 3e-08
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           P I+++P  +D++V++    ++ C   G P P+I W ++G  + TN 
Sbjct: 9  SPRIIEHP--TDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNE 54

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 63.4 bits (154), Expect = 5e-13
 Identities = 23/188 (12%), Positives = 43/188 (22%), Gaps = 61/188 (32%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
              + ++ G Y C        + S  I L V+              P        + ++ 
Sbjct: 56  RNATFKNTGTYRCTELEDPM-AGSTTIHLYVK-------------DPAHSW-NLLAQEVT 100

Query: 62  VREGSNVSMRCAASGSPP-PSIMWRREGGEMITNSFNNTV-------------------- 100
           V EG    + C  +      S+   REGG  +                            
Sbjct: 101 VVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYV 160

Query: 101 -------------------------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYW 135
                                    PP +K+    +    G+   + C +       N  
Sbjct: 161 CKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVI 220

Query: 136 TREKGDMI 143
            +     +
Sbjct: 221 LKRGDTKL 228

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 17/107 (15%), Positives = 29/107 (27%), Gaps = 11/107 (10%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
            +        Y+C        S S  I L V               PP I   P  S ++
Sbjct: 149 RKAKVLDSNTYVCKTMVNGRESTSTGIWLKVN---------RVHPEPPQIKLEP--SKLV 197

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPS 108
              G    + C+A+ +     +  + G   +    N+          
Sbjct: 198 RIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKV 244

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 22/140 (15%), Positives = 39/140 (27%), Gaps = 45/140 (32%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV------- 100
            P I   P+  +++V  G  V++RC ++G    S+ W        T    +         
Sbjct: 4   APVIE--PSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRN 57

Query: 101 -------------------------------PPIVKIPSQLIGAHEGQQLVLECISEAYP 129
                                               + +Q +   EGQ+ VL C+     
Sbjct: 58  ATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPA 117

Query: 130 KSVNY-WTREKGDMIANGKT 148
              +    RE G  +     
Sbjct: 118 LKDSVSLMREGGRQVLRKTV 137

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 63.8 bits (155), Expect = 6e-13
 Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 9/101 (8%)

Query: 2   TEVSREHMGAYLCIASNG-------VPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDY 54
            E +    G Y+    +G       V  S         + Q   +  I   +    +   
Sbjct: 169 NEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGL 228

Query: 55  PTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           P    + ++EG  +++ C   G PPP + W +    + ++ 
Sbjct: 229 P--DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDD 267

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 45.7 bits (108), Expect = 1e-06
 Identities = 13/87 (14%), Positives = 21/87 (24%), Gaps = 6/87 (6%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
           TE S++  G Y  I  +        R+ L+ +             +   I    T   I 
Sbjct: 66  TEFSKKDAGIYEVILKDDRG-KDKSRLKLVDE-----AFKELMMEVCKKIALSATDLKIQ 119

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREG 88
                               + W   G
Sbjct: 120 STAEGIQLYSFVTYYVEDLKVNWSHNG 146

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPP-PSIMWRREGGEMITNS 95
           P  ++Y       V    NV ++C  +       I+W ++  E+  + 
Sbjct: 7  GPHFVEYL---SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE 52

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 63.2 bits (154), Expect = 7e-13
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 11/94 (11%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
             V+ +    Y   A+N    SVS    L V+        +      P  L+      + 
Sbjct: 67  ASVTDDDATVYQVRATNQGG-SVSGTASLEVE--------VPAKIHLPKTLEGM--GAVH 115

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
              G  VS++   SG P P I W++    +  N 
Sbjct: 116 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG 149

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
          +M P   +     ++ VR  SN ++ C  +G P P + W R+G E+I + 
Sbjct: 2  AMAPHFKEELR--NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG 49

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 63.5 bits (154), Expect = 8e-13
 Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 22/105 (20%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
           T +     G Y  + SN    + +    + V                P+IL Y       
Sbjct: 380 TRLKGTEGGTYTFLVSNSDV-NAAIAFNVYVN-------------TKPEILTYD------ 419

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKI 106
                N  ++C A+G P P+I W    G     S +     +  +
Sbjct: 420 --RLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTL 462

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 59.7 bits (144), Expect = 2e-11
 Identities = 23/191 (12%), Positives = 46/191 (24%), Gaps = 57/191 (29%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPT-SSDI 60
           +       G ++C A+N    S +    L V                  I  +P  ++ +
Sbjct: 278 SSARVNDSGVFMCYANNTFG-SANVTTTLEVVD-------------KGFINIFPMINTTV 323

Query: 61  MVREGSNVSMRCAASGSPPPS-IMWRREGGEM-----------------------ITN-- 94
            V +G NV +       P P    W                              +T   
Sbjct: 324 FVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLK 383

Query: 95  ----------------SFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTRE 138
                           +        V    +++        +L+C++  +P+    W   
Sbjct: 384 GTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFC 443

Query: 139 KGDMIANGKTP 149
            G       + 
Sbjct: 444 PGTEQRCSASV 454

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 57.8 bits (139), Expect = 1e-10
 Identities = 26/193 (13%), Positives = 51/193 (26%), Gaps = 66/193 (34%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
            +    + G Y C   +G+    S  I + V+              P  +  +     + 
Sbjct: 85  EKAEATNTGKYTCTNKHGL----SNSIYVFVR-------------DPAKL--FLVDRSLY 125

Query: 62  VREGSNVSMRCAASGSPPPSIMWRR----------------------------------- 86
            +E ++  +RC  +     +   +                                    
Sbjct: 126 GKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLH 185

Query: 87  -----EGGEMITNSFNNTV------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY- 134
                EG  +++  F   V       P+V +        EG++  + C  +    SV   
Sbjct: 186 CSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYST 245

Query: 135 WTREKGDMIANGK 147
           W RE        K
Sbjct: 246 WKRENSQTKLQEK 258

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 53.9 bits (129), Expect = 2e-09
 Identities = 23/197 (11%), Positives = 49/197 (24%), Gaps = 63/197 (31%)

Query: 7   EHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGS 66
            H     C         +S++ +L V+               P +    + +  ++REG 
Sbjct: 179 YHRLCLHCSVDQEGKSVLSEKFILKVR---------PAFKAVPVVS--VSKASYLLREGE 227

Query: 67  NVSMRCAASGSPPP-SIMWRREGGEM---------------------------------- 91
             ++ C            W+RE  +                                   
Sbjct: 228 EFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGV 287

Query: 92  ----ITNSFNNT---------VPPIVKIPSQ---LIGAHEGQQLVLECISEAYPKSVNY- 134
                 N+F +              + I       +  ++G+ + L    EA+PK  +  
Sbjct: 288 FMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQ 347

Query: 135 WTREKGDMIANGKTPFQ 151
           W           +   +
Sbjct: 348 WIYMNRTFTDKWEDYPK 364

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 46.6 bits (110), Expect = 6e-07
 Identities = 20/173 (11%), Positives = 41/173 (23%), Gaps = 47/173 (27%)

Query: 7   EHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGS 66
                +LC+    +          +            +   PP I   P  SD++VR G 
Sbjct: 5   RGAWDFLCVLLLLLRVQTGSSQPSV-------SPGEPS---PPSIH--PGKSDLIVRVGD 52

Query: 67  NVSMRCAASGSPPPSIMWRREGGEMITNSFNNT--------------------------- 99
            + + C   G     + W  E  +    +  N                            
Sbjct: 53  EIRLLCTDPG----FVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIY 108

Query: 100 ----VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKT 148
                P  + +  + +   E    ++ C       +       +G  +     
Sbjct: 109 VFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLR 161

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 63.2 bits (153), Expect = 1e-12
 Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 18/97 (18%)

Query: 2   TEVSREHMGAYLCIASNGV---PPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSS 58
              S +  G Y+C+A +        V +++ ++ +             + P I       
Sbjct: 630 KNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER-------------VAPTITGNLE-- 674

Query: 59  DIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           +     G ++ + C ASG+PPP IMW ++   ++ +S
Sbjct: 675 NQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS 711

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 61.3 bits (148), Expect = 5e-12
 Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 17/114 (14%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
              +      Y C A N V     + I   V                P+I   P   D+ 
Sbjct: 518 VIQAANVSALYKCEAVNKVG-RGERVISFHVT-------------RGPEITLQP---DMQ 560

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHE 115
             E  +VS+ C A  S   ++ W + G + +         P+ K    L   + 
Sbjct: 561 PTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNA 614

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 59.8 bits (144), Expect = 2e-11
 Identities = 34/191 (17%), Positives = 52/191 (27%), Gaps = 56/191 (29%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
             V+R   G Y C AS+G+  +      + V               P         S + 
Sbjct: 295 DGVTRSDQGLYTCAASSGLM-TKKNSTFVRVH------------EKPFVAFGSGMESLVE 341

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGE----------------------------MIT 93
              G  V +     G PPP I W + G                              ++T
Sbjct: 342 ATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILT 401

Query: 94  NSFNNT-----------VPPIVK---IPSQLIGAHEGQQLVLECISEAYPKSVNY-WTRE 138
           N  +             VPP +    + S +     G    L C   A P   +  W  +
Sbjct: 402 NPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQ 461

Query: 139 KGDMIANGKTP 149
             +  AN  + 
Sbjct: 462 LEEECANEPSQ 472

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 55.9 bits (134), Expect = 4e-10
 Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 14/119 (11%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI- 60
            EVS    G Y  I +N +     +  ++ +               PP I +    S + 
Sbjct: 386 MEVSERDTGNYTVILTNPIS-KEKQSHVVSLVVYV-----------PPQIGEKSLISPVD 433

Query: 61  MVREGSNVSMRCAASGSPPP-SIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQ 118
             + G+  ++ C     PPP  I W  +  E   N  +  V      P +   + E  Q
Sbjct: 434 SYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQ 492

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 52.5 bits (125), Expect = 6e-09
 Identities = 28/193 (14%), Positives = 43/193 (22%), Gaps = 56/193 (29%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
            +V     GAY C        +    + +            Y S     + D      I 
Sbjct: 91  PKVIGNDTGAYKCFYRETDL-ASVIYVYVQD----------YRSPFIASVSDQHGVVYIT 139

Query: 62  VREGSNVSMRCAASGSPPPSIMWRR-----------------EGGEMITN---------- 94
             +   V + C  S S     +  R                 + G  I +          
Sbjct: 140 ENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVF 199

Query: 95  ------------SFNNTV------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWT 136
                            V        +V  PS  I    G++LVL C +         + 
Sbjct: 200 CEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN 259

Query: 137 REKGDMIANGKTP 149
            E        K  
Sbjct: 260 WEYPSSKHQHKKL 272

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 46.7 bits (110), Expect = 6e-07
 Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 12/85 (14%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
           +      + G   C A      S    + ++V                 D++  P S  I
Sbjct: 187 IPSYMISYAGMVFCEAKINDE-SYQSIMYIVVV----------VGYRIYDVVLSP-SHGI 234

Query: 61  MVREGSNVSMRCAASGSPPPSIMWR 85
            +  G  + + C A       I + 
Sbjct: 235 ELSVGEKLVLNCTARTELNVGIDFN 259

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 15/181 (8%), Positives = 37/181 (20%), Gaps = 69/181 (38%)

Query: 8   HMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSN 67
            +  +LC+ +      +       V                P +        + ++  + 
Sbjct: 8   AVALWLCVETRAASVGLPS-----VSLD------------LPRLS--IQKDILTIKANTT 48

Query: 68  VSMRCAASGSPPPSIMWRREGGEMITNSFNN----------------------------- 98
           + + C   G      +W                                           
Sbjct: 49  LQITC--RGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYR 106

Query: 99  ---------------TVPPIVKIPSQ----LIGAHEGQQLVLECISEAYPKSVNYWTREK 139
                            P I  +  Q     I  ++ + +V+ C+      +V+   R  
Sbjct: 107 ETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYP 166

Query: 140 G 140
            
Sbjct: 167 E 167

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 59.1 bits (143), Expect = 2e-12
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           PP I+++P  SD++V +G   ++ C A G P P+I W + G  + T+ 
Sbjct: 8  FPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDK 54

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 4   VSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
            SR   G Y+C+A N +  +VS    L V 
Sbjct: 79  KSRPDEGVYVCVARNYLGEAVSHDASLEVA 108

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 62.0 bits (150), Expect = 3e-12
 Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 16/103 (15%)

Query: 2   TEVSREHMGAYLCIASN---GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSS 58
            +V+ E  G Y C+ +    G   ++++ I L ++ +             P I+      
Sbjct: 185 HDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKK--------KEETIPVIISPL--K 234

Query: 59  DIMVREGSNVSMRCAA---SGSPPPSIMWRREGGEMITNSFNN 98
            I    GS +++ C     +G+P  +++W       I +++  
Sbjct: 235 TISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPG 277

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 46.6 bits (110), Expect = 5e-07
 Identities = 24/202 (11%), Positives = 44/202 (21%), Gaps = 72/202 (35%)

Query: 4   VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
             +E  G Y+C   N         I L V                 D      S   ++ 
Sbjct: 88  ALQEDSGTYVCTTRNASY-CDKMSIELRVF-------------ENTDAFLPFISYPQILT 133

Query: 64  EGSNVSMRCA-----ASGSPPPSIMWRREGGEM--------------------------- 91
             ++  + C              I W ++   +                           
Sbjct: 134 LSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAG 193

Query: 92  -----ITNSFNNT------------------VPPIVKIPSQLIGAHEGQQLVLEC---IS 125
                +T +                        P++  P + I A  G +L + C   + 
Sbjct: 194 YYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLG 253

Query: 126 EAYPKSVNYWTREKGDMIANGK 147
              P +   W       I +  
Sbjct: 254 TGTPLTTMLWWTANDTHIESAY 275

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 7/45 (15%)

Query: 58 SDIMVREGSNVSMRCA-------ASGSPPPSIMWRREGGEMITNS 95
                EG  V++RC        AS SP  ++ W +         
Sbjct: 26 KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPG 70

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 61.2 bits (148), Expect = 3e-12
 Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 12/93 (12%)

Query: 1   MTEVSREHMGAYLCIASNGV-PPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
           +     ++  ++ C A+  V    + K     ++  Y            P + +     +
Sbjct: 146 LKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY-----------GPRLDERDCPGN 194

Query: 60  IMVREGSNVSMRCAASGSPPPSIMWRREGGEMI 92
               E S  +  C A G+P P +   ++G   +
Sbjct: 195 WTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL 227

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 49.7 bits (118), Expect = 4e-08
 Identities = 20/182 (10%), Positives = 35/182 (19%), Gaps = 52/182 (28%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
                 E      C    G   S      + +             S P   +     +  
Sbjct: 65  SVTAEDEGTQRLTCAVILG-NQSQETLQTVTIY------------SFPAPNV---ILTKP 108

Query: 61  MVREGSNVSMRCAASGSPPPSIMWRREG--GEMITNSFNNT------------------- 99
            V EG+ V+++C A      ++        G         T                   
Sbjct: 109 EVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQ 168

Query: 100 -------------VPPIVKIPS--QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144
                          P +            E  Q    C +   P       ++    + 
Sbjct: 169 LIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP 228

Query: 145 NG 146
            G
Sbjct: 229 IG 230

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 37.3 bits (86), Expect = 8e-04
 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 4   VSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
           V+R+  G YLC A +     V++ + + V 
Sbjct: 235 VTRDLEGTYLCRARSTQ-GEVTREVTVNVL 263

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 61.3 bits (148), Expect = 4e-12
 Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 16/96 (16%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
           +      H  +  CI +  +     + + L VQ               P++       + 
Sbjct: 198 LVPSREAHQQSLACIVNYHMDR-FKESLTLNVQY-------------EPEVTIEGFDGNW 243

Query: 61  MVREGSNVSMRCAASGSPPPS-IMWRREGGEMITNS 95
              +  +V + C A  +PP +   W    G +    
Sbjct: 244 -YLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV 278

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 60.5 bits (146), Expect = 9e-12
 Identities = 23/191 (12%), Positives = 42/191 (21%), Gaps = 57/191 (29%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
           + +  E  G Y+C  +     +   ++ L V                             
Sbjct: 97  SRLELEDEGVYICEFATFPTGNRESQLNLTV----------MAKPTNWIEGTQAVLRAKK 146

Query: 62  VREGSNVSMRC-AASGSPPPSIMWRREGGEMITNSFNN---------------------- 98
            ++   +   C +A+G PP  + W                                    
Sbjct: 147 GQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQ 206

Query: 99  ----------------------TVPPIVKI-PSQLIGAHEGQQLVLECISEAYPKSVNY- 134
                                    P V I         +   + L C ++A P +  Y 
Sbjct: 207 QSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYH 266

Query: 135 WTREKGDMIAN 145
           WT   G +   
Sbjct: 267 WTTLNGSLPKG 277

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 61.2 bits (148), Expect = 5e-12
 Identities = 12/90 (13%), Positives = 22/90 (24%), Gaps = 17/90 (18%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
           + V+R   G Y C +S       S+  ++ +                  I    +S D  
Sbjct: 295 SSVARNDTGYYTCSSSK----HPSQSALVTIV-------------EKGFINATNSSEDYE 337

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEM 91
           + +             P     W       
Sbjct: 338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKSF 367

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 54.3 bits (130), Expect = 1e-09
 Identities = 16/180 (8%), Positives = 42/180 (23%), Gaps = 62/180 (34%)

Query: 3   EVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMV 62
           + S     +Y  ++ +      +    L  Q                 + +   ++ + V
Sbjct: 21  DSSVGKSSSYPMVSESPEDLGCA----LRPQ-------------SSGTVYE---AAAVEV 60

Query: 63  REGSNVSMRCAASGSPPPSIMWRREGGEMITNSF-------------------------- 96
              ++++++         S +W  +   +                               
Sbjct: 61  DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLL 120

Query: 97  --NNTV-------------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGD 141
              +                 +  +        E Q   L CISE+ P+ +  W      
Sbjct: 121 FIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVLCDSQ 179

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 50.8 bits (121), Expect = 2e-08
 Identities = 8/98 (8%), Positives = 24/98 (24%), Gaps = 17/98 (17%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
            +++    G YL    +    + +    + ++                            
Sbjct: 108 LKMTETQAGEYLLFIQSEAT-NYTILFTVSIR-------------NTLLYTLRR--PYFR 151

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT 99
             E    ++ C +   P P + W     +  +    + 
Sbjct: 152 KMENQ-DALVCISESVPEPIVEWVLCDSQGESCKEESP 188

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 18/193 (9%), Positives = 44/193 (22%), Gaps = 65/193 (33%)

Query: 4   VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
           +         C A N +    ++               ++T  +        T   + ++
Sbjct: 198 LHELFGTDIRCCARNELGRECTR---------------LFTIDLNQTPQ--TTLPQLFLK 240

Query: 64  EGSNVSMRC-AASGSPPPSIMWRREGGEMI------------------------------ 92
            G  + +RC A   +    + W  E   +                               
Sbjct: 241 VGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN 300

Query: 93  ---------TNSFNNT------VPPIVKIP--SQLIGAHEGQQLVLECISEAYPKSVNYW 135
                    +   + +          +     S+     + ++       +AYP+    W
Sbjct: 301 DTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTW 360

Query: 136 TREKGDMIANGKT 148
           T  +       K 
Sbjct: 361 TFSRKSFPCEQKG 373

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 60.1 bits (145), Expect = 1e-11
 Identities = 24/184 (13%), Positives = 41/184 (22%), Gaps = 66/184 (35%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
            +      G Y C  SNG+    +  I + V                P  L       + 
Sbjct: 62  EKAEATRTGTYTCSNSNGL----TSSIYVFV--------------RDPAKLFLV-GLPLF 102

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV--------------------- 100
            +E S+  +RC  +             G+ +                             
Sbjct: 103 GKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVR 162

Query: 101 -------------------------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY- 134
                                     P+V +P       +G    + C  +    SVN  
Sbjct: 163 CAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSM 222

Query: 135 WTRE 138
           W + 
Sbjct: 223 WLKM 226

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 56.3 bits (135), Expect = 2e-10
 Identities = 11/93 (11%), Positives = 25/93 (26%), Gaps = 12/93 (12%)

Query: 4   VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
               H     C A        S +  L V+               P +      +  +++
Sbjct: 153 KRAYHRLCVRCAAQRDGTWLHSDKFTLKVR---------EAIKAIPVVS--VPETSHLLK 201

Query: 64  EGSNVSMRCAASGSPPP-SIMWRREGGEMITNS 95
           +G   ++ C         + MW +   +    +
Sbjct: 202 KGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIA 234

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 45.9 bits (108), Expect = 9e-07
 Identities = 19/129 (14%), Positives = 33/129 (25%), Gaps = 30/129 (23%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGS------PPPSIMWRREGGEMITNSF----- 96
           PP I   P  S+++V  G  +S+ C              + M   +  E I         
Sbjct: 12  PPSIH--PAQSELIVEAGDTLSLTCIDPDFVRWTFKTYFNEMVENKKNEWIQEKAEATRT 69

Query: 97  -------NNT----------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREK 139
                  +N            P  + +    +   E    ++ C       S        
Sbjct: 70  GTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECD 129

Query: 140 GDMIANGKT 148
           G  +    T
Sbjct: 130 GKSLPTDLT 138

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 59.5 bits (143), Expect = 1e-11
 Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 7/107 (6%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
           +T V  +  G Y C  +     +              S +   T   P + +   T+  +
Sbjct: 94  LTHVHPQDGGRYWCQVAQWSIRTEFGLDAK-------SVVLKVTGHTPSNNVHVSTAEVV 146

Query: 61  MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIP 107
            V EG++++M C  +     ++ W                P   K  
Sbjct: 147 QVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQ 193

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 56 TSSDIMVREGSNVSMRC---AASGSPPPSIMWRREGG 89
          T +++ V  G  V + C    A+ + PP I W +   
Sbjct: 8  THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGAS 44

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 59.9 bits (144), Expect = 1e-11
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 16/103 (15%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKR---IMLIVQCQYFSKLYIYTSSMPPDILDYPTS 57
           +     ++  ++ C A+  V   +  +     L V                P + +    
Sbjct: 331 LKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL-------------YGPRLDERDCP 377

Query: 58  SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV 100
            +    E S  +  C A G+P P +   ++G   +    + TV
Sbjct: 378 GNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTV 420

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 49.5 bits (117), Expect = 7e-08
 Identities = 20/179 (11%), Positives = 36/179 (20%), Gaps = 52/179 (29%)

Query: 4   VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
              E      C    G   S      + +             S P   +     +   V 
Sbjct: 253 AEDEGTQRLTCAVILG-NQSQETLQTVTIY------------SFPAPNV---ILTKPEVS 296

Query: 64  EGSNVSMRCAASGSPPPSIMWRREG--GEMITNSFNNT---------------------- 99
           EG+ V+++C A      ++        G         T                      
Sbjct: 297 EGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIH 356

Query: 100 ----------VPPIV--KIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG 146
                       P +  +         E  Q    C +   P       ++    +  G
Sbjct: 357 KNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG 415

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 38.3 bits (88), Expect = 4e-04
 Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 37/128 (28%)

Query: 58  SDIMVREGSNVSMRCAASGSPPPSIMWR-------------------------------- 85
           S +++  G +V + C+ S   P  +                                   
Sbjct: 7   SKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCY 66

Query: 86  -REGGEMITNSFNNTV---PPIVKIPSQLIGAHEGQQLVLECISEA-YPKSVNYWTREKG 140
                   T     TV   P  V++         G+ L L C  E   P++       +G
Sbjct: 67  SNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRG 126

Query: 141 DMIANGKT 148
           +     + 
Sbjct: 127 EKELKREP 134

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 56.2 bits (136), Expect = 2e-11
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
          SS PP IL  P  ++  +       ++C A+G P P I W +EG       
Sbjct: 5  SSGPPIILQGP--ANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRD 53

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 59.0 bits (142), Expect = 3e-11
 Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 24/94 (25%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
             +  E    Y+C   +       + + L+V                        +SD  
Sbjct: 72  KNLKIEDSDTYICEVEDQ-----KEEVQLLV-------------------FGLTANSDTH 107

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           + +G ++++   +     PS+  R   G+ I   
Sbjct: 108 LLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG 141

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 49.4 bits (117), Expect = 6e-08
 Identities = 10/96 (10%), Positives = 30/96 (31%), Gaps = 2/96 (2%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYP-TSSD 59
           ++++  +  G + C         V  +I ++V     +   +Y          +P   + 
Sbjct: 146 VSQLELQDSGTWTCTVLQNQ-KKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTV 204

Query: 60  IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
             +     +  +   + S    I +  +  E+    
Sbjct: 205 EKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKR 240

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 7/43 (16%), Positives = 16/43 (37%)

Query: 60  IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPP 102
           ++ ++G  V + C AS        W+      I  +  + +  
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTK 46

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 56.6 bits (136), Expect = 8e-11
 Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 17/95 (17%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
           T +    +G Y C      P   +K+ +L V              + P         D  
Sbjct: 89  TNLQLSDIGTYQCKVKKA-PGVANKKFLLTVL-------------VKPSGT--RCFVDGS 132

Query: 62  VREGSNVSMRC-AASGSPPPSIMWRREGGEMITNS 95
              G++  ++C    GS P    W++        +
Sbjct: 133 EEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPT 167

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 56.5 bits (136), Expect = 1e-10
 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 17/99 (17%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
           T+V  +  G Y C+ S G   +  KRI + V                           ++
Sbjct: 85  TDVKLQDAGVYRCMISYG--GADYKRITVKVN---------------APYNKINQRILVV 127

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV 100
               S   + C A G P   ++W     ++++     T 
Sbjct: 128 DPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTN 166

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 53.5 bits (129), Expect = 2e-10
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 36 YFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
          +    +   +++   IL  P    + V EG +    C   G P P++ W R+G  + T++
Sbjct: 2  HHHHHHSSKTTLAARILTKP--RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA 59

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 52.7 bits (127), Expect = 5e-10
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           + P I       +     G ++ + C ASG+PPP IMW ++   ++ +S
Sbjct: 8  RVAPTITGNL--ENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS 55

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 52.8 bits (127), Expect = 5e-10
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
          SS PP I   P   +  V       + C A+GSP P+I+WR++G  + T  
Sbjct: 5  SSGPPVIRQGP--VNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQD 53

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 51.9 bits (125), Expect = 9e-10
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
          S  PP         D  VREG +V M     G P P + W R    +  + 
Sbjct: 2  SKAPPTFKVSL--MDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQ 50

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 52.3 bits (125), Expect = 1e-09
 Identities = 16/86 (18%), Positives = 22/86 (25%), Gaps = 3/86 (3%)

Query: 44  TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPI 103
             S     +  P         G +V + C A GSP P I W  EG               
Sbjct: 17  RGSHMAGFVQAP--LSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGAR 74

Query: 104 VKIPSQLIGAHEGQQLVLECISEAYP 129
           +         H+     +  I     
Sbjct: 75  LDRVHIHATYHQHAASTIS-IDTLVE 99

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 53.1 bits (127), Expect = 1e-09
 Identities = 18/116 (15%), Positives = 33/116 (28%), Gaps = 35/116 (30%)

Query: 62  VREGSNVSMRCAASGSPPP--SIMWRREGGEMITNSFNNT-------------------- 99
              GS + + C+ + S        W + G  +  ++                        
Sbjct: 10  EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFL 69

Query: 100 ------------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY-WTREKGDM 142
                        PP VK        +EG+  +L C SE+ P   ++ W +     
Sbjct: 70  PEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSE 125

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 52.0 bits (124), Expect = 3e-09
 Identities = 17/109 (15%), Positives = 27/109 (24%), Gaps = 20/109 (18%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
              S +  G Y C+              + +               PP +    +S  I 
Sbjct: 54  KVDSDDQWGEYSCVFLP----EPMGTANIQLH-------------GPPRVKAVKSSEHIN 96

Query: 62  VREGSNVSMRCAASGSPPP-SIMWRREGGEMITNSFNNTVPPIVKIPSQ 109
             EG    + C +   PP     W +          N +        SQ
Sbjct: 97  --EGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 51.2 bits (123), Expect = 2e-09
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 43 YTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           +S   P  L  P   D+ V+EG    M C  SG P P + W+ +G  +  +S
Sbjct: 4  GSSGFRPHFLQAP--GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDS 54

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 53.7 bits (128), Expect = 2e-09
 Identities = 15/134 (11%), Positives = 38/134 (28%), Gaps = 17/134 (12%)

Query: 1   MTEVSREHMGAYLCIAS---NGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTS 57
                  + G Y C+ +   NG    +++ + + V             +  P ++  P  
Sbjct: 181 FLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGS--------PKNAVPPVIHSPND 232

Query: 58  -SDIMVREGSNVSMRCAA----SGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIG 112
                   G  + + C             + W  + G+   +   +         S+   
Sbjct: 233 HVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTID-GKKPDDITIDVTINESISHSRTED 291

Query: 113 AHEGQQLVLECISE 126
               Q L ++ ++ 
Sbjct: 292 ETRTQILSIKKVTS 305

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 41.4 bits (96), Expect = 4e-05
 Identities = 12/91 (13%), Positives = 22/91 (24%), Gaps = 13/91 (14%)

Query: 4   VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
                 G Y C+  N           L V         +   S     +  P     +  
Sbjct: 86  TLLNDTGNYTCMLRNTTY-CSKVAFPLEV---------VQKDSCFNSPMKLPVHKLYIEY 135

Query: 64  EGSNVS---MRCAASGSPPPSIMWRREGGEM 91
               ++   +      S  P+I W     ++
Sbjct: 136 GIQRITCPNVDGYFPSSVKPTITWYMGCYKI 166

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 2e-09
 Identities = 11/69 (15%), Positives = 18/69 (26%)

Query: 32  VQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEM 91
           +QC     L    ++            +  V  G +V +RC   G       W     E 
Sbjct: 140 LQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQ 199

Query: 92  ITNSFNNTV 100
                 +  
Sbjct: 200 SATVMKSGG 208

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 20/96 (20%)

Query: 4   VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
            S  +     C A N V  +    + + V      +                        
Sbjct: 220 TSDLNRKNVTCWAENDVGRA-EVSVQVNVSFPASVQ-------------------LHTAV 259

Query: 64  EGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT 99
           E  +  +  +  G P PS+ W   G  +   SF  T
Sbjct: 260 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFT 295

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 50.9 bits (122), Expect = 3e-09
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
               P  +  P      V EG +V + C  S  PPP + W+R    +  N+
Sbjct: 11 EHKRAPMFIYKP--QSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNT 60

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 52.9 bits (126), Expect = 3e-09
 Identities = 20/195 (10%), Positives = 42/195 (21%), Gaps = 68/195 (34%)

Query: 10  GAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVS 69
             YLC  +      V   +   ++              PP     P + ++   +   + 
Sbjct: 103 RRYLCTVTTKNGDCVQGIVRSHIR-------------KPPSC--IPETYELGTHDKYGID 147

Query: 70  MRC-AASGSPPPSIMWRREGGEMITNS--------------------------------- 95
           + C         +I W +   E+I +                                  
Sbjct: 148 LYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVR 207

Query: 96  ------FNNTVPPIVKIP---------SQLIGAHEGQQLVLECISEAYPKSVN----YWT 136
                  +      V               I    G+   + C + +    V+     W 
Sbjct: 208 IKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWE 267

Query: 137 REKGDMIANGKTPFQ 151
              G +I      + 
Sbjct: 268 NPSGWIIGLDFGVYS 282

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 18/100 (18%), Positives = 26/100 (26%), Gaps = 11/100 (11%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
                E  G Y C         +   I++         L +  S      L       I 
Sbjct: 187 HNPELEDSGRYDCYVHYDDV-RIKNDIVVSRC----KILTVIPSQDHRFKLILD--PKIN 239

Query: 62  VREGSNVSMRCAASGSP----PPSIMWRREGGEMITNSFN 97
           V  G   ++ C A  +        I W    G +I   F 
Sbjct: 240 VTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFG 279

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 50.8 bits (122), Expect = 3e-09
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
          + S  P I+ +P   D  VR G +V +    +G+ P +  W +   ++  + 
Sbjct: 3  SGSSGPQIIQFP--EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE 52

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 50.1 bits (120), Expect = 3e-09
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 45 SSMPPDILDYPTS--SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
          +   P   +          V   + V  RC A G+P P++ W + G E     
Sbjct: 1  NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH 53

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 49.6 bits (119), Expect = 4e-09
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEM 91
             I   P  +   +  GS + ++C A GSP P   W +    +
Sbjct: 3  KLQICVEP--TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL 44

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 7e-09
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
              I D      + V EG  V   C A G PPP+I+W      +++  
Sbjct: 384 RARIRDRKAQ-QVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAK 430

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 49.4 bits (118), Expect = 8e-09
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAA-SGSPPPSIMWRREGGEMITNSF 96
          P  +      S   VR G++V+  C A S SP  +++W R     + +  
Sbjct: 9  PIMVTVEEQRS-QSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA 57

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 48.9 bits (117), Expect = 1e-08
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
          PP  +  P   ++ + EG    M    SG P P + W   G  + ++ 
Sbjct: 5  PPRFIQVP--ENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDD 50

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 48.9 bits (117), Expect = 1e-08
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           SS  P            + EG  V+  C  +G+P P I W ++G ++   S
Sbjct: 4  GSSGAPFFEMKL--KHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKS 53

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 48.5 bits (116), Expect = 1e-08
 Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 2/49 (4%)

Query: 47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
          + P IL       I ++ G   ++     G+P P+  W           
Sbjct: 1  LKPKILTAS--RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAP 47

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 48.5 bits (116), Expect = 1e-08
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEM 91
             + P         D  V EG +  ++C+  G+P P I W   G  +
Sbjct: 7  GMEVAPSFSSVL--KDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI 52

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 48.6 bits (116), Expect = 1e-08
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEM 91
          +      ++  P      V  G  V++ C     P P I W ++G  +
Sbjct: 6  SGLEEVQLVVEP--EGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL 51

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 48.4 bits (116), Expect = 2e-08
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           P I+      D  V   S       A+G P P+ +W ++G   IT  
Sbjct: 6  KPVIVTGL--QDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKA-ITQG 50

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 50.4 bits (120), Expect = 3e-08
 Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 5/99 (5%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPT---S 57
           M ++  E  G Y     +G   +    ++L+       +               P     
Sbjct: 170 MEKLQDEDEGTYTFQLQDGKA-TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY 228

Query: 58  SDIMVREGSNVSMRCAASGSPPP-SIMWRREGGEMITNS 95
               V    NV ++C  +       I+W ++  E+  + 
Sbjct: 229 LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE 267

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 47.3 bits (112), Expect = 3e-07
 Identities = 11/94 (11%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
            ++  + +G Y C  ++    + S  I      +  +    +    P   +    + +I+
Sbjct: 63  KDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLAL--SHEHKFPTVPVKSELAVEIL 120

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
             +G       A   S    + +     E+    
Sbjct: 121 E-KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGP 153

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 50.0 bits (118), Expect = 4e-08
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 12/100 (12%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
           +T + +E  G YLC A +         I                  +  +     + + +
Sbjct: 294 ITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLF------------VNEESTIPRSPTVV 341

Query: 61  MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV 100
               GS+V++ C  +     SI +               V
Sbjct: 342 KGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLV 381

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 10/95 (10%), Positives = 21/95 (22%), Gaps = 7/95 (7%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
           + ++     G YLC A +    +           Q                + +  +   
Sbjct: 189 INQLRLSDAGQYLCQAGDDSNSNKKN-----ADLQVLKPEPELVYEDLRGSVTFHCALGP 243

Query: 61  MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
            V   +     C  S      ++    G       
Sbjct: 244 EV--ANVAKFLCRQSSGENCDVVVNTLGKRAPAFE 276

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 49.0 bits (116), Expect = 5e-08
 Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 19/104 (18%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
           M  VS  +  +YLC A+      + K I + +          Y+    P+I         
Sbjct: 58  MNPVSFGNEHSYLCTATCESR-KLEKGIQVEI----------YSFPKDPEIHLSGP---- 102

Query: 61  MVREGSNVSMRCAASGSPP---PSIMWRREGGEMITNSFNNTVP 101
            +  G  ++++C+ +   P     I   +    M +  F     
Sbjct: 103 -LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDAD 145

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGG 89
          S  + + G +VS+ C+ +G   P   WR +  
Sbjct: 9  SRYLAQIGDSVSLTCSTTGCESPFFSWRTQID 40

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 48.3 bits (115), Expect = 5e-08
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 2/86 (2%)

Query: 10 GAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVS 69
          G     AS   P S      +  +  +  ++      + P         D+ V EGS   
Sbjct: 3  GMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTI--LDMEVVEGSAAR 60

Query: 70 MRCAASGSPPPSIMWRREGGEMITNS 95
            C   G P P +MW ++   +  + 
Sbjct: 61 FDCKVEGYPDPEVMWFKDDNPVKESR 86

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 48.5 bits (115), Expect = 9e-08
 Identities = 11/92 (11%), Positives = 27/92 (29%), Gaps = 15/92 (16%)

Query: 4   VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
           ++ + MG Y    ++         +   V                P    +   ++  V+
Sbjct: 78  ITMKDMGVYTLDMTDENYRRTQATVRFHV--------------HQPVTQPFLQVTNTTVK 123

Query: 64  EGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           E  +V++ C +      +I W      +    
Sbjct: 124 ELDSVTLTCLS-NDIGANIQWLFNSQSLQLTE 154

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 4   VSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
           + RE  G Y C  SN V    S  I L + 
Sbjct: 170 IKREDAGEYQCEISNPVSVRRSNSIKLDII 199

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 46.5 bits (111), Expect = 1e-07
 Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 3/48 (6%)

Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           P I +        V +GS+   R    G P P   W +  G  I  S
Sbjct: 5  APKIFERI--QSQTVGQGSDAHFRVRVVGKPDPECEWYKN-GVKIERS 49

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 10/101 (9%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSM-----PPDILDYP 55
           M ++  E  G Y     +G   + S  +++    +   K   +          P  ++Y 
Sbjct: 65  MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL 124

Query: 56  TSSDIMVREGSNVSMRCAASGSPPPS-IMWRREGGEMITNS 95
                 V    NV ++C  +     + I+W +     I+  
Sbjct: 125 ---SWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISVD 161

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 11/52 (21%), Positives = 13/52 (25%), Gaps = 3/52 (5%)

Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
          T    P I          V  G N          P   + W   G E +  S
Sbjct: 4  TLDHAPRITLRM--RSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVE-LQES 52

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 45.5 bits (108), Expect = 3e-07
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 48 PPDI-LDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN 97
          PP I L        + + G  +++     G P P ++W + G  + T+  +
Sbjct: 21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVH 71

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
            P I++ P  +D+ V EG    ++C AS     S+ W    G ++T+ 
Sbjct: 341 APVIVEPP--ADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHG 385

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
            P I+D P   D+ + EG    ++C     P  S+ W    G +++++
Sbjct: 352 APFIMDAP--RDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHA 395

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 46.6 bits (110), Expect = 4e-07
 Identities = 16/97 (16%), Positives = 26/97 (26%), Gaps = 17/97 (17%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
             V     G Y C+   G      K + + V+  Y                    +  + 
Sbjct: 72  PSVQVRDSGQYRCLVICG-AAWDYKYLTVKVKASYMR----------------IDTRILE 114

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN 98
           V     V + C A G P   + W+       T+    
Sbjct: 115 VPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRT 151

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 8/35 (22%), Positives = 13/35 (37%)

Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITN 94
            V  GS+VS+ C         +   R   + + N
Sbjct: 12 YTVDVGSSVSLECDFDRRECTELEGIRASLQKVEN 46

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 20/99 (20%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
            + +    G Y C        S+S  + L V                  +L  P      
Sbjct: 56  FKANNNDSGEYTCQTGQT---SLSDPVHLTVL-------------FEWLVLQTPHL---E 96

Query: 62  VREGSNVSMRCAASGSPPP-SIMWRREGGEMITNSFNNT 99
            +EG  + +RC +    P   + + + G     +  + T
Sbjct: 97  FQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPT 135

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 35/117 (29%)

Query: 55  PTSSDIMVREGSNVSMRCAASGSPPP-SIMWRREGGEM---------------------- 91
                I V +  +V++ C  + SP   SI W   G  +                      
Sbjct: 9   LEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTC 68

Query: 92  ------ITNSFNNTV---PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY-WTRE 138
                 +++  + TV     +++ P       EG+ ++L C S      V   + + 
Sbjct: 69  QTGQTSLSDPVHLTVLFEWLVLQTPHLEF--QEGETIMLRCHSWKDKPLVKVTFFQN 123

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 46.0 bits (109), Expect = 6e-07
 Identities = 10/93 (10%), Positives = 23/93 (24%), Gaps = 21/93 (22%)

Query: 4   VSREHMGAYLCIASNGVPPSV-SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMV 62
           +  +    Y     +    +V  K   L +Q                       S   + 
Sbjct: 73  LKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ--------------------ERVSKPKIS 112

Query: 63  REGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
               N ++ C       P +   ++G  +  + 
Sbjct: 113 WTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQ 145

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 44.7 bits (106), Expect = 6e-07
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
             I++     D+ V+EGS+ + RC  S +    + W  +   +  N 
Sbjct: 13 RVHIIEDL--EDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANE 58

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 46.4 bits (110), Expect = 6e-07
 Identities = 24/180 (13%), Positives = 45/180 (25%), Gaps = 61/180 (33%)

Query: 4   VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
            S    G Y C          S  I L +                  +L   +    +  
Sbjct: 55  ASVNDSGEYRCQRGLS---GRSDPIQLEI-------------HRGWLLLQVSSR---VFT 95

Query: 64  EGSNVSMRC-AASGSPPPSIMWRREGGEM------------------------------- 91
           EG  +++RC A       ++++ R G                                  
Sbjct: 96  EGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHR 155

Query: 92  -ITNSFNNTV-----PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVN---YWTREKGDM 142
             +   + TV      P++          EG  + L C ++   +      Y++   G  
Sbjct: 156 YTSAGISVTVKELFPAPVLNASVTSP-LLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSK 214

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 14/84 (16%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
           + + +  H G Y C          S  I + V+  +            P +     S   
Sbjct: 135 ILKTNISHNGTYHCSGMGKHR-YTSAGISVTVKELF----------PAPVLN---ASVTS 180

Query: 61  MVREGSNVSMRCAASGSPPPSIMW 84
            + EG+ V++ C          + 
Sbjct: 181 PLLEGNLVTLSCETKLLLQRPGLQ 204

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 16/114 (14%), Positives = 33/114 (28%), Gaps = 35/114 (30%)

Query: 58  SDIMVREGSNVSMRCAASGSP-PPSIMWRREGGEMITNSFNNTV---------------- 100
             + V +   V++ C     P   S  W   G    T++ +  +                
Sbjct: 9   PWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDSGEYRCQRG 68

Query: 101 ---------------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY-WTRE 138
                            ++++ S++    EG+ L L C +       N  + R 
Sbjct: 69  LSGRSDPIQLEIHRGWLLLQVSSRVF--TEGEPLALRCHAWKDKLVYNVLYYRN 120

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 45.6 bits (108), Expect = 7e-07
 Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 20/100 (20%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
           +   +    G Y C  +       S  + L V              +   +L  P     
Sbjct: 58  IDAATVNDSGEYRCQTNLSTL---SDPVQLEV-------------HIGWLLLQAPRWV-- 99

Query: 61  MVREGSNVSMRC-AASGSPPPSIMWRREGGEMITNSFNNT 99
             +E   + +RC +   +    + + + G +      N+ 
Sbjct: 100 -FKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSD 138

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 14/115 (12%), Positives = 29/115 (25%), Gaps = 35/115 (30%)

Query: 57  SSDIMVREGSNVSMRCAASGSPPP-SIMWRREG--------------------------- 88
                V E  +V+++C  + SP   S  W                               
Sbjct: 14  PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDSGEYRCQT 73

Query: 89  -GEMITNSFNNTV---PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY-WTRE 138
               +++     V     +++ P  +    E   + L C S          + + 
Sbjct: 74  NLSTLSDPVQLEVHIGWLLLQAPRWVF--KEEDPIHLRCHSWKNTALHKVTYLQN 126

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 14/90 (15%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSV-SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
           +  +     G Y C    G      S  + L+V   Y            P +        
Sbjct: 68  IDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLY----------GKPFLSADRGL-- 115

Query: 60  IMVREGSNVSMRCAASGSPPPSIMWRREGG 89
            ++  G N+S+ C+++  P       +EG 
Sbjct: 116 -VLMPGENISLTCSSAHIPFDRFSLAKEGE 144

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPP-SIMWRREGGEMITNS 95
          PP I     +       G    ++C    +PPP  I W  +   + + +
Sbjct: 14 PPIISS---TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGT 59

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 20/100 (20%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
           +   + +  G Y C          S  + L V              +   +L  P     
Sbjct: 58  IDAATVDDSGEYRCQTQLSTL---SDPVQLEVH-------------IGWLLLQAPRW--- 98

Query: 61  MVREGSNVSMRC-AASGSPPPSIMWRREGGEMITNSFNNT 99
           + +E   + +RC +   +    + + + G        N+ 
Sbjct: 99  VFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSD 138

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 14/114 (12%), Positives = 29/114 (25%), Gaps = 35/114 (30%)

Query: 58  SDIMVREGSNVSMRCAASGSPPP-SIMWRREG---------------------------- 88
               V E  +V+++C  + SP   S  W                                
Sbjct: 15  QWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTQ 74

Query: 89  GEMITNSFNNTV---PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY-WTRE 138
              +++     V     +++ P  +    E   + L C S          + + 
Sbjct: 75  LSTLSDPVQLEVHIGWLLLQAPRWVF--KEEDPIHLRCHSWKNTALHKVTYLQN 126

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 11/84 (13%), Positives = 21/84 (25%), Gaps = 12/84 (14%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
                 + G   C A        S   +++V       + +  S              I 
Sbjct: 69  PSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSH------------GIE 116

Query: 62  VREGSNVSMRCAASGSPPPSIMWR 85
           +  G  + + C A       I + 
Sbjct: 117 LSVGEKLVLNCTARTELNVGIDFN 140

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 8/49 (16%), Positives = 18/49 (36%)

Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMIT 93
          S +      +P + ++ V EG    + C    +   S+ W     + + 
Sbjct: 1  SKVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLY 49

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 44.4 bits (104), Expect = 3e-06
 Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 12/99 (12%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
            E        Y+C+   G   +      L V          +      ++     +  +M
Sbjct: 82  AEAQVGDERDYVCVVRAGAAGTAEATARLNV----------FAKPEATEVSPNKGTLSVM 131

Query: 62  VREGSNVSMRC-AASGSPPPSIMWRREGGEMITNSFNNT 99
             + +     C + +G+P P I W R G  +      N 
Sbjct: 132 -EDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNP 169

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 13/103 (12%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
           +  +     G Y C+       +  +  +  V       L +      P I      SD 
Sbjct: 69  ILALRPSDEGTYECVVLKYEKDAFKREHLAEVT------LSVKADFPTPSI------SDF 116

Query: 61  MVREGSNVSMRCAASG-SPPPSIMWRREGGEMITNSFNNTVPP 102
            +   +   + C+ SG  P P + W   G E+   +   +  P
Sbjct: 117 EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDP 159

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 40.9 bits (96), Expect = 9e-06
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 42 IYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
          +   + P  +        ++V  G  + +RC        SI W R+G +++ ++
Sbjct: 3  LPEQAQPWGVPVEV--ESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESN 53

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 41.2 bits (97), Expect = 9e-06
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
          SS P  I+      D  V  G  V M    S      +MW + G E +T  
Sbjct: 5  SSGPVLIVTPL--EDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVE-LTRE 51

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 41.2 bits (97), Expect = 9e-06
 Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 2/39 (5%)

Query: 58 SDIMVREGSNVSMRCAASGSPPPS-IMWRREGGEMITNS 95
             +  EG +V   C        + + W   G   + NS
Sbjct: 9  MHAVGEEGGHVKYVCKIENYDQSTQVTWYF-GVRQLENS 46

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 4/55 (7%)

Query: 49  PDILDYPTSSDIMVREGSNVSMRCAASGSPPP--SIMWRREGGEMITNSFNNTVP 101
           P I   P +       GS+VS  C+A+ S     +  W  +   +      N   
Sbjct: 11  PQITVQPET--QSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAH 63

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 4/52 (7%)

Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           SS P    +     D+ V EG   ++RC  S    P + W       +   
Sbjct: 4  GSSGPVRFQEAL--KDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNV-LRPG 51

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 14/125 (11%), Positives = 33/125 (26%), Gaps = 35/125 (28%)

Query: 58  SDIMVREGSNVSMRCAASGSPPP-SIMWRREGGEMITN---------------------- 94
               + +G NV++ C  +      S  W   G                            
Sbjct: 12  PWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQ 71

Query: 95  --SFNNTV-------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY-WTREKGDMIA 144
             + +  V         +++  ++++   EGQ L L C            + ++   +  
Sbjct: 72  QVNESEPVYLEVFSDWLLLQASAEVV--MEGQPLFLRCHGWRNWDVYKVIYYKDGEALKY 129

Query: 145 NGKTP 149
             +  
Sbjct: 130 WYENH 134

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 40.6 bits (95), Expect = 4e-05
 Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 20/100 (20%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
           +     E  G Y C        + S+ + L V                  +L    +S  
Sbjct: 55  IVNAKFEDSGEYKCQHQQV---NESEPVYLEV-------------FSDWLLL---QASAE 95

Query: 61  MVREGSNVSMRC-AASGSPPPSIMWRREGGEMITNSFNNT 99
           +V EG  + +RC          +++ ++G  +     N+ 
Sbjct: 96  VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHN 135

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           SS P  I+      D  V  G +V +RC  S +  P + W ++    I  S
Sbjct: 4  GSSGPAAIIKPL--EDQWVAPGEDVELRCELSRAGTP-VHWLKDRKA-IRKS 51

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 40.5 bits (95), Expect = 2e-05
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
             +V  G  + +RC        SI W R+G ++  ++
Sbjct: 11 ESFLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLAESN 47

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
           SS   ++L     +D+ V+       +C  S     +  W + G E +  S
Sbjct: 4  GSSGQLEVLQDI--ADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVE-VRPS 51

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 1/46 (2%)

Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGE 90
          SS P  IL       +       V + C  S        W ++G +
Sbjct: 5  SSGPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQK 49

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREG 88
            +   EG+ V++ C     P  +I W R+G
Sbjct: 26 VAVYTWEGNQVNITCEVFAYPSATISWFRDG 56

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 57 SSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMIT 93
          +  I V EG  ++++C  S     S+ W    G  I 
Sbjct: 8  TETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIF 44

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 40.7 bits (95), Expect = 3e-05
 Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 20/99 (20%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
             ++R+  G Y     +     +  +  L ++                       S  ++
Sbjct: 66  KNLTRDDSGTYNVTVYSTNGTRILNKA-LDLRILE------------------MVSKPMI 106

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV 100
             E SN ++ C         +   + G E + +    T+
Sbjct: 107 YWECSNATLTCEVLEGTDVELKLYQ-GKEHLRSLRQKTM 144

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 39.2 bits (92), Expect = 5e-05
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
          SS      +    +++ V E       C     P  ++ WR+   E +  S
Sbjct: 5  SSGANCFTEEL--TNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLE-LRAS 51

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 39.3 bits (92), Expect = 5e-05
 Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
          SS P               EG+  +++C    S    + W++ G E + + 
Sbjct: 5  SSGPARFTQDL--KTKEASEGATATLQCEL--SKVAPVEWKK-GPETLRDG 50

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 40.4 bits (94), Expect = 6e-05
 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 18/99 (18%)

Query: 6   REHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREG 65
           RE     +C        ++  R ++            +      +++  P         G
Sbjct: 60  REPETQPVCFFRCA-RRTLQARGLIRT----------FQRPDRVELMPLPP----WQPVG 104

Query: 66  SNVSMRCAASGSPPP---SIMWRREGGEMITNSFNNTVP 101
            N ++ C   G+ P    ++   R   E+I  SF    P
Sbjct: 105 ENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPP 143

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 6/46 (13%), Positives = 15/46 (32%)

Query: 55  PTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV 100
              S      G  +++RC         +       ++++   N +V
Sbjct: 251 YKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSV 296

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 38.9 bits (91), Expect = 7e-05
 Identities = 6/41 (14%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 55 PTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
          P   ++    G++ ++ C  +      + W ++G + +++S
Sbjct: 16 PAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKK-LSSS 54

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 13/47 (27%), Positives = 15/47 (31%), Gaps = 3/47 (6%)

Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAAS-GSPPPSIMWRREGGE 90
          SS    I        + V EG + S  C  S  S     MW   G  
Sbjct: 5  SSGHVGITKRL--KTMEVLEGESCSFECVLSHESASDPAMWTVGGKT 49

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 2/38 (5%)

Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
            + V  GS               + W+R G + I+ S
Sbjct: 16 RSVEVAAGSPAVFEAETER-AGVKVRWQRGGSD-ISAS 51

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 18/92 (19%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSV----SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPT 56
           ++ ++++  G Y C  S    P      S  + +++   Y            P +   P 
Sbjct: 67  ISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLY----------EKPSLSAQPG 116

Query: 57  SSDIMVREGSNVSMRCAASGSPPPSIMWRREG 88
                V  G NV++ C +S S        REG
Sbjct: 117 P---TVLAGENVTLSC-SSRSSYDMYHLSREG 144

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
          + S    IL     +D  V  G  + ++C  S + P    W + G   +  S
Sbjct: 3  SGSSGLKILTPL--TDQTVNLGKEICLKCEISENIPGK--WTKNGLP-VQES 49

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 11/95 (11%), Positives = 25/95 (26%), Gaps = 15/95 (15%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
           + +  E  G+Y    S      +S   + I++                  +     S + 
Sbjct: 75  SNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQ--------------LRNIQVTNHSQLF 120

Query: 62  VREGSNVSMRCAA-SGSPPPSIMWRREGGEMITNS 95
                 + + C+        S  W   G  + +  
Sbjct: 121 QNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQP 155

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 3/47 (6%)

Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGE 90
          + S    +       D     G  V + C  S     ++ W + G E
Sbjct: 3  SGSSGIMVTKQL--EDTTAYCGERVELECEVSE-DDANVKWFKNGEE 46

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 5/48 (10%)

Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
          P    +     +    EG+   +RC  S   P  + W + G E + + 
Sbjct: 19 PIKFTEGL--RNEEATEGATAVLRCELSKMAP--VEWWK-GHETLRDG 61

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 5/49 (10%)

Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF 96
           P I    +          +  +     G+P P++ W   G  +  + +
Sbjct: 4  APTITFLES-----PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKY 47

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 16/92 (17%), Positives = 25/92 (27%), Gaps = 22/92 (23%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
            +V +   G Y C         V K+            + ++     P  L         
Sbjct: 89  QDVQKADEGIYTCEIRLKNESMVMKK-----------PVELWVLPEEPRDL--------R 129

Query: 62  VREGSNVSMRCAASGSPPP---SIMWRREGGE 90
           VR G    MRC+   +       + W    G 
Sbjct: 130 VRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGS 161

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 19/100 (19%), Positives = 28/100 (28%), Gaps = 19/100 (19%)

Query: 4   VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
           V+    G YLC   +G        + L V                          D+   
Sbjct: 90  VTASDSGKYLCYFQDG-DFYEKALVELKVAALG-----------------SDLHVDVKGY 131

Query: 64  EGSNVSMRCAASG-SPPPSIMWRREGGEMITNSFNNTVPP 102
           +   + + C ++G  P P I W    GE I       V  
Sbjct: 132 KDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVAD 171

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 2/48 (4%)

Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
             I+       +       V + C     P   + W ++G E +  S
Sbjct: 11 SSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEE-VVES 56

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 15/102 (14%), Positives = 28/102 (27%), Gaps = 23/102 (22%)

Query: 2   TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
             VS+E  G Y     +        +I + V                        S  ++
Sbjct: 74  YNVSKEDRGDYYMRMLHE--TEDQWKITMEVY--------------------EMVSKPMI 111

Query: 62  VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPI 103
             E SN ++ C         +   + G E + +    T+   
Sbjct: 112 YWECSNATLTCEVLEGTDVELKLYQ-GKEHLRSLRQKTMSYQ 152

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 36.5 bits (85), Expect = 4e-04
 Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 2/38 (5%)

Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
            + V  G         S  P     W+ + G+ +  S
Sbjct: 13 YGVEVFVGETAHFEIELS-EPDVHGQWKLK-GQPLAAS 48

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 36.9 bits (85), Expect = 5e-04
 Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 5/55 (9%)

Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSP---PPSIMWRREGGEMITNS 95
          + S     ++ P      V+ G +++             P+I W +     + + 
Sbjct: 3  SGSSGILFIEKP--QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASK 55

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 37.5 bits (87), Expect = 6e-04
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 18/93 (19%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSV----SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPT 56
           M+ V+  H G Y C  S+   P+     S  ++++V            +   P +L +P 
Sbjct: 78  MSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVT----------GNHRKPSLLAHPG 127

Query: 57  SSDIMVREGSNVSMRCAASGSPPPSIMWRREGG 89
               +V+ G  V ++C  S          +EG 
Sbjct: 128 P---LVKSGERVILQC-WSDIMFEHFFLHKEGI 156

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 15/90 (16%)

Query: 1   MTEVSREHMGAYLCIASNGVPPSV-SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
           +  ++ ++ G Y C   + V  S  S  + L++   Y            P +   P+   
Sbjct: 62  IPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAY----------SKPTLSALPSP-- 109

Query: 60  IMVREGSNVSMRCAASGSPPPSIMWRREGG 89
            +V  G +V++ C  S SP  + +  +E  
Sbjct: 110 -LVTSGKSVTLLC-QSRSPMDTFLLCKERA 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.87
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.86
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.85
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.85
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.85
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.83
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.82
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.81
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.78
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.78
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.76
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.76
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.76
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.75
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.75
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.75
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.75
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.75
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.74
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.74
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.74
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.73
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.73
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.73
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.73
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.73
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.73
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.72
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.72
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.72
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.72
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.72
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.71
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.71
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.71
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.7
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.69
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.69
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.69
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.68
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.68
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.67
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.67
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.65
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.65
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.64
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.64
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.64
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.64
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.63
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.62
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.62
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.62
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.61
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.6
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.58
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.57
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.56
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.56
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.55
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.55
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.55
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.55
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.53
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.52
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.52
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.51
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.51
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.5
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.5
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.49
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.49
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.48
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.48
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.48
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.48
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.46
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.46
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.46
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.46
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.45
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.45
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.45
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.44
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.44
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.44
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.43
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.42
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.42
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.41
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.41
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.41
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.4
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.39
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.39
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.38
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.37
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.36
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.36
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.36
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.36
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.35
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.35
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.35
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.35
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.34
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.34
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.34
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.33
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.33
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.33
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.32
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.32
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.31
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.31
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.31
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.31
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.3
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.29
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.29
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.29
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.28
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.28
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.28
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.28
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.28
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.27
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.27
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.27
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.27
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.27
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.26
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.26
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.26
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.26
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.25
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.25
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.25
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.25
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.24
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.24
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.24
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.24
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.24
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.24
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.23
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.23
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.23
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.23
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.23
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.23
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.22
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.22
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.22
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.22
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.22
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.21
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.21
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.21
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.2
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.19
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.18
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.18
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.18
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.18
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.18
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.17
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.17
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.17
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.17
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.17
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.16
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.16
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.16
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.16
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.16
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.16
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.15
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.14
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.14
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.14
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.13
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.13
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.13
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.13
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.13
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.12
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.12
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.11
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.11
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.11
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.11
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.11
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.11
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.1
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.1
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.1
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.1
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.1
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.1
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.1
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.09
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.09
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.09
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.09
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.09
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.09
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.09
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.08
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.08
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.08
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.07
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.07
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.07
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.07
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.07
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.07
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.06
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.05
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.05
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.05
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.04
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.04
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.04
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.04
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.04
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.03
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.03
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.02
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.02
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.02
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.02
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.02
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.02
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.02
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.01
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.01
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.01
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.0
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.0
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.0
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.0
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	98.99
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.99
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.99
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.99
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.99
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.99
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.99
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.98
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.98
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.97
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.97
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	98.97
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.97
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.97
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.97
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.97
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.96
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	98.96
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.96
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.96
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.95
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.95
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.94
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.93
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.93
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.93
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.93
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.92
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.91
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.91
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.91
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.91
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.9
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.9
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	98.9
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	98.9
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.9
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.9
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.89
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	98.89
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.89
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.88
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	98.88
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.87
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	98.87
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.87
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.86
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	98.86
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.86
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.86
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	98.85
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.84
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.84
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.84
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.83
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.83
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.82
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.82
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	98.8
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	98.8
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.8
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.79
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	98.79
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.79
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.79
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.78
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	98.78
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.78
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.78
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.78
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.78
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.77
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	98.77
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.75
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	98.75
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	98.74
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.74
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.74
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	98.74
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.74
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	98.74
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.73
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.73
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.7
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.7
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	98.69
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.69
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	98.69
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.69
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.69
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	98.69
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	98.68
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	98.68
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	98.68
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	98.67
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	98.67
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	98.67
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	98.66
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.66
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.66
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	98.65
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	98.64
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.64
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.64
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.64
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.63
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	98.63
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	98.63
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	98.63
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.62
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.62
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.62
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	98.61
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	98.61
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	98.6
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	98.6
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	98.59
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	98.59
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.59
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	98.58
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	98.58
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.58
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.57
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.57
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.57
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.57
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	98.57
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	98.57
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	98.56
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	98.56
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.56
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.55
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.55
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	98.55
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.54
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	98.54
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	98.53
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.53
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	98.52
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	98.51
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.49
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.49
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	98.49
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	98.49
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	98.49
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	98.48
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	98.48
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	98.48
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	98.48
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	98.47
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	98.47
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.47
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.46
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.46
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	98.46
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	98.46
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.45
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.45
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.44
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	98.44
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.43
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	98.43
2ens_A	96	Advanced glycosylation END product-specific recept	98.42
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	98.42
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	98.41
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	98.41
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	98.4
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	98.4
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.4
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.4
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	98.39
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	98.38
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	98.38
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.37
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	98.37
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.37
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	98.37
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	98.37
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	98.36
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	98.35
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	98.35
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	98.33
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.33
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	98.33
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.33
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	98.32
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	98.32
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	98.31
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.3
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.28
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.28
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	98.27
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.26
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.25
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	98.25
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	98.24
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	98.23
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	98.23
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	98.23
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.23
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	98.22
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.22
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	98.22
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	98.2
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	98.2
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	98.2
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	98.19
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.19
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	98.19
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	98.19
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	98.18
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	98.18
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	98.18
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	98.18
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	98.17
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	98.17
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	98.16
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	98.16
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	98.16
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.15
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	97.44
1he7_A	126	High affinity nerve growth factor receptor; transf	98.15
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.13
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	98.11
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	98.11
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	98.1
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	98.1
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	98.1
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	98.08
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	98.07
2ens_A	96	Advanced glycosylation END product-specific recept	98.07
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	98.06
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	98.06
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	98.05
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	98.02
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.02
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	98.01
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	98.01
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	98.01
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	98.0
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	98.0
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	97.99
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	97.99
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	97.98
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	97.98
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.97
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	97.96
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	97.96
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	97.96
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	97.96
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	97.95
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	97.95
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	97.95
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	97.94
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	97.94
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	97.92
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	97.92
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	97.9

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.87  E-value=2.1e-21  Score=144.54  Aligned_cols=128  Identities=24%  Similarity=0.436  Sum_probs=103.0

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.|.|..| ..+..+.|.|.             .+|.+...+  ....+.+|+.+.|.|.+.|.|.|
T Consensus       351 i~~v~~~D~G~Y~C~a~N~~g-~~~~~~~l~V~-------------~~P~~~~~~--~~~~~~~G~~v~l~C~~~g~P~p  414 (570)
T 3b43_A          351 MYNLSVEDSGDYTCEAHNAAG-SASSSTSLKVK-------------EPPVFRKKP--HPVETLKGADVHLECELQGTPPF  414 (570)
T ss_dssp             EESCCGGGCEEEEEEEEBTTB-CCEEEEEECEE-------------CCCEECSCC--CCEEECTTCCEEEEEEEESSSSC
T ss_pred             ECCCCcccCEEEEEEEEeCCC-EEEEEEEEEec-------------CCCeeecCC--CceeecCCCEEEEEEEEecCCCC
Confidence            467899999999999999998 45555565553             678887666  56778899999999999999999


Q ss_pred             eEEEEeCCeeeEecccC-------------------------------------------CCCCCeeeeCCceeEeecCC
Q psy16421         81 SIMWRREGGEMITNSFN-------------------------------------------NTVPPIVKIPSQLIGAHEGQ  117 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~-------------------------------------------~~~~p~~~~~~~~~~~~~g~  117 (151)
                      .+.|++ ++..+.....                                           +..+|.|...+....+.+|+
T Consensus       415 ~v~W~k-~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~~~~~g~  493 (570)
T 3b43_A          415 QVSWHK-DKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGE  493 (570)
T ss_dssp             CCEEEE-TTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEECCCCBCCBTTC
T ss_pred             EEEEEE-CCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcccccCCCceecCCC
Confidence            999999 4554332110                                           34678888887788889999


Q ss_pred             cEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        118 QLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       118 ~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      .+.|.|.+.|.|+|.+.|+|+++.+...
T Consensus       494 ~~~l~c~~~g~p~~~v~W~k~~~~~~~~  521 (570)
T 3b43_A          494 EVQLQATIEGAEPISVAWFKDKGEIVRE  521 (570)
T ss_dssp             CEEEEEEEESCSSCCCEEEETTEECCCC
T ss_pred             eEEEEEEEecCCCCEEEEEeCCeEeccC
Confidence            9999999999999999999998666543

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.86  E-value=9.7e-21  Score=129.27  Aligned_cols=129  Identities=23%  Similarity=0.436  Sum_probs=99.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|..| ..+..+.|.|.             .+|.+...+. ....+.+|+.+.|.|.+.|.|.+
T Consensus        65 i~~v~~~d~G~Y~C~~~n~~g-~~~~~~~l~V~-------------~~p~~~~~~~-~~~~v~~g~~~~l~C~~~g~p~~  129 (284)
T 2rik_A           65 VLKVTKGDAGQYTCYASNVAG-KDSCSAQLGVQ-------------EPPRFIKKLE-PSRIVKQDEHTRYECKIGGSPEI  129 (284)
T ss_dssp             ESSCCGGGCEEEEEEEEETTE-EEEEEEEEEEE-------------CCCEEEECCC-SEEEEETTCCEEEEEEEESSSCC
T ss_pred             EecCCcccCEEEEEEEEECCc-eEEEEEEEEcc-------------CCCcccccCC-CceEecCCceEEEEEEEeeeCCC
Confidence            567899999999999999877 44555565553             5677665542 34567899999999999999999


Q ss_pred             eEEEEeCCeeeEecccC-------------------------------------------CCCCCeeeeCCceeEeecCC
Q psy16421         81 SIMWRREGGEMITNSFN-------------------------------------------NTVPPIVKIPSQLIGAHEGQ  117 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~-------------------------------------------~~~~p~~~~~~~~~~~~~g~  117 (151)
                      .+.|++ ++..+.....                                           +..+|.+...+....+.+|+
T Consensus       130 ~v~W~~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~  208 (284)
T 2rik_A          130 KVLWYK-DETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGA  208 (284)
T ss_dssp             EEEEEE-TTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTC
T ss_pred             EEEEEE-CCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCC
Confidence            999999 4544332211                                           23466666666777889999


Q ss_pred             cEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        118 QLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       118 ~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      ++.|.|.+.|.|.|.+.|+|+|..+..+
T Consensus       209 ~v~l~C~~~g~p~~~v~W~~~~~~~~~~  236 (284)
T 2rik_A          209 DVHLECELQGTPPFQVSWHKDKRELRSG  236 (284)
T ss_dssp             CEEEEEECBSSSCCEEEEEETTEEECBT
T ss_pred             eEEEEEEEEecCCCEEEEEECCEECcCC
Confidence            9999999999999999999998766543

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.85  E-value=9.9e-21  Score=140.93  Aligned_cols=128  Identities=22%  Similarity=0.429  Sum_probs=99.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.|.|..| ..+..+.|             .+..+|.+..... ....+.+|+.+.|.|.+.|.|.+
T Consensus       257 i~~v~~~D~G~Y~C~a~N~~g-~~~~~~~l-------------~V~~~p~~~~~~~-~~~~v~~g~~~~l~C~~~g~P~p  321 (570)
T 3b43_A          257 VLKVTKGDAGQYTCYASNVAG-KDSCSAQL-------------GVQEPPRFIKKLE-PSRIVKQDEHTRYECKIGGSPEI  321 (570)
T ss_dssp             ESSBCGGGCEEEEEEEEETTE-EEEEEEEE-------------CCBCCCEEEECCC-SBCCEESSCEEEEEEEEESSSSC
T ss_pred             EcccCcccCEEEEEEEECCCC-cEEEEEEE-------------EeecCCcccccCC-CccEEcCCCcEEEEEEEeeCCCC
Confidence            567899999999999999887 44444444             4457788776543 23457789999999999999999


Q ss_pred             eEEEEeCCeeeEecccC-------------------------------------------CCCCCeeeeCCceeEeecCC
Q psy16421         81 SIMWRREGGEMITNSFN-------------------------------------------NTVPPIVKIPSQLIGAHEGQ  117 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~-------------------------------------------~~~~p~~~~~~~~~~~~~g~  117 (151)
                      .+.|++ ++..+.....                                           +..+|.|...+....+.+|+
T Consensus       322 ~v~W~k-~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~  400 (570)
T 3b43_A          322 KVLWYK-DETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGA  400 (570)
T ss_dssp             EEEEEE-TTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEECTTC
T ss_pred             EEEEeE-CCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceeecCCC
Confidence            999999 4544332110                                           34577777777777889999


Q ss_pred             cEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        118 QLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       118 ~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ++.|.|.+.|.|.|.+.|+|+|..+..
T Consensus       401 ~v~l~C~~~g~P~p~v~W~k~g~~l~~  427 (570)
T 3b43_A          401 DVHLECELQGTPPFQVSWHKDKRELRS  427 (570)
T ss_dssp             CEEEEEEEESSSSCCCEEEETTEECCS
T ss_pred             EEEEEEEEecCCCCEEEEEECCEECcC
Confidence            999999999999999999999876543

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.85  E-value=2.9e-20  Score=128.24  Aligned_cols=135  Identities=23%  Similarity=0.335  Sum_probs=99.6

Q ss_pred             Cccccc-cCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSR-EHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++. +|+|.|+|.+.|..| ..+..+.|.|......      ....|.+...+  ....+.+|+.+.|.|.+.|.|.
T Consensus        67 i~~~~~~~D~G~Y~C~a~n~~g-~~~~~~~l~V~~~~~~------p~~~p~i~~~~--~~~~v~~g~~v~l~C~~~g~p~  137 (304)
T 2yd9_A           67 IQPLRTPRDENVYECVAQNSVG-EITVHAKLTVLREDQL------PSGFPNIDMGP--QLKVVERTRTATMLCAASGNPD  137 (304)
T ss_dssp             ECSCCTTTTCSEEEEEEECSSC-EECCEEEEEEECGGGC------CTTCCEEEECC--CCEEEETTSCEEECCEEECSSC
T ss_pred             EecccccCCCeEEEEEEECCCC-eEEEEEEEEEeccccC------CCCCCeeecCC--ccEEEeCCCeEEEEEECccCCC
Confidence            456777 999999999999988 4666777777521100      01226666655  5678889999999999999999


Q ss_pred             CeEEEEeCCeeeEeccc----------C-------------------------------------CCCCCeeeeCCceeE
Q psy16421         80 PSIMWRREGGEMITNSF----------N-------------------------------------NTVPPIVKIPSQLIG  112 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~----------~-------------------------------------~~~~p~~~~~~~~~~  112 (151)
                      +.+.|++ ++..+....          .                                     ...+|.+...+....
T Consensus       138 ~~v~W~k-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~  216 (304)
T 2yd9_A          138 PEITWFK-DFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHE  216 (304)
T ss_dssp             CEEEEEE-TTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBC
T ss_pred             CeEEEEE-CCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceE
Confidence            9999999 555543211          0                                     023455666666667


Q ss_pred             eecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        113 AHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      +.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+
T Consensus       217 v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~  249 (304)
T 2yd9_A          217 IMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPE  249 (304)
T ss_dssp             CCTTCCEEEEEEEEEESCCEEEEEETTEECSCS
T ss_pred             EcCCCeEEEEEEEeeeCCCEEEEEECCEECCCc
Confidence            889999999999999999999999997766443

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.85  E-value=2.6e-20  Score=127.45  Aligned_cols=129  Identities=20%  Similarity=0.421  Sum_probs=95.4

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|..+...+..+.|.|.             .+|.+...+  ....+.+|+.+.|.|.+.+.|.+
T Consensus        66 i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~-------------~~~~~~~~~--~~~~~~~g~~v~l~C~~~~~p~~  130 (291)
T 1qz1_A           66 IYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF-------------QKLMFKNAP--TPQEFKEGEDAVIVCDVVSSLPP  130 (291)
T ss_dssp             ECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEE-------------CCSEEEECC--SSEEEETTSCEEECCEEECSSCC
T ss_pred             EecCCCCCCEEEEEEEEcCCCCeeEEEEEEEee-------------ccccccCCC--CcccccCCCeEEEEEEeccCCCC
Confidence            567899999999999999886444445555543             667777666  56788899999999999999999


Q ss_pred             eEEEEeCCeeeEeccc---------C-----------------------------------CCCCCeeeeCC--ceeEee
Q psy16421         81 SIMWRREGGEMITNSF---------N-----------------------------------NTVPPIVKIPS--QLIGAH  114 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~---------~-----------------------------------~~~~p~~~~~~--~~~~~~  114 (151)
                      .+.|+++ +..+....         .                                   +..+|.+....  ....+.
T Consensus       131 ~v~W~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~  209 (291)
T 1qz1_A          131 TIIWKHK-GRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATAN  209 (291)
T ss_dssp             EEEEEET-TSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETT
T ss_pred             EEEEEEC-CEEcccCCCceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccc
Confidence            9999994 44432110         0                                   11234444332  244677


Q ss_pred             cCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        115 EGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       115 ~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      +|+.+.|.|.+.|.|.|.+.|+|+|..+...
T Consensus       210 ~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~  240 (291)
T 1qz1_A          210 LGQSVTLVCDADGFPEPTMSWTKDGEPIENE  240 (291)
T ss_dssp             SCCCEEEEEEEEEESCCEEEEEETTEECCCC
T ss_pred             cCceEEEEEEEEEeCCCcEEEEECCEECcCC
Confidence            8999999999999999999999998766543

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.83  E-value=5.3e-20  Score=125.90  Aligned_cols=128  Identities=20%  Similarity=0.413  Sum_probs=91.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|..|...+..+.|.|.             .+|.+...+  ....+.+|+.+.|.|.+.+.|.+
T Consensus        64 i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~-------------~~~~~~~~~--~~~~v~~G~~v~l~C~~~~~p~~  128 (291)
T 2wim_A           64 IYNANIEDAGIYRCQATDAKGQTQEATVVLEIY-------------QKLTFREVV--SPQEFKQGEDAEVVCRVSSSPAP  128 (291)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEE-------------CCCBCCSCC--CSEEEETTSCEEECCCCBCSSCC
T ss_pred             EccCCcccCEEEEEEEecccCceEEEEEEEEec-------------CCcceEeCC--CChhhcCCCCEEEEEEEccCCCC
Confidence            567899999999999999887543445555543             456555444  56778899999999999999999


Q ss_pred             eEEEEeCCeeeEecccC--------------------------------------------CCCCCeeeeCCc--eeEee
Q psy16421         81 SIMWRREGGEMITNSFN--------------------------------------------NTVPPIVKIPSQ--LIGAH  114 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~--------------------------------------------~~~~p~~~~~~~--~~~~~  114 (151)
                      .+.|++ ++..+.....                                            +..+|.+.....  ...+.
T Consensus       129 ~v~W~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~  207 (291)
T 2wim_A          129 AVSWLY-HNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAE  207 (291)
T ss_dssp             EEEEEC-C----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSS
T ss_pred             EEEEEE-CCccccccCCceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceec
Confidence            999999 4444332100                                            122344433332  34567


Q ss_pred             cCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        115 EGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       115 ~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      +|+.+.|.|.+.|.|.|.+.|+|+|..+..
T Consensus       208 ~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~  237 (291)
T 2wim_A          208 RGEEMTFSCRASGSPEPAISWFRNGKLIEE  237 (291)
T ss_dssp             SCCEEEEECBCCCBSCCEEEEEETTEECCC
T ss_pred             CCCeEEEEEEeecCCCCeEEEEECCEECcC
Confidence            899999999999999999999999776643

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.82  E-value=1.8e-19  Score=128.36  Aligned_cols=135  Identities=24%  Similarity=0.407  Sum_probs=99.6

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|..+...+..+.+.|.....       ...++.+...+  ....+.+|+.+.|.|.+.+.|.+
T Consensus       181 i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~-------~~~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~p~~  251 (403)
T 3laf_A          181 ISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPG-------LHRQLYFLQRP--SNVIAIEGKDAVLECCVSGYPPP  251 (403)
T ss_dssp             ECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCC-------CCEEEEEEECC--CCEEEETTSCEEECCEEEEESCC
T ss_pred             EcccccccCEEEEEEEEcCCCceeccceeEEEecCCC-------cccCceEecCC--CceEecCCCcEEEEEEcCCCCCC
Confidence            4678999999999999998875555667776642110       00112233333  56778899999999999999999


Q ss_pred             eEEEEeCCeeeEecccC-----------------------------------------CCCCCeeeeCCceeEeecCCcE
Q psy16421         81 SIMWRREGGEMITNSFN-----------------------------------------NTVPPIVKIPSQLIGAHEGQQL  119 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~-----------------------------------------~~~~p~~~~~~~~~~~~~g~~~  119 (151)
                      .+.|++ ++..+.....                                         +..+|.+...+....+.+|+.+
T Consensus       252 ~~~W~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v  330 (403)
T 3laf_A          252 SFTWLR-GEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDI  330 (403)
T ss_dssp             EEEEEE-TTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCE
T ss_pred             eEEEEE-CCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceEEecCCeE
Confidence            999999 4554432110                                         2346677777777788999999


Q ss_pred             EEEeeecccCCCeeEEEcCCceeccC
Q psy16421        120 VLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       120 ~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      .|.|.+.|.|.|.+.|+|+|..+..+
T Consensus       331 ~l~C~~~g~p~p~v~W~~~g~~~~~~  356 (403)
T 3laf_A          331 EFECAVSGKPVPTVNWMKNGDVVIPS  356 (403)
T ss_dssp             EECCEEEEESCCEEEEEETTEECCCS
T ss_pred             EEEEEEeeccCCEEEEEECCEECCCC
Confidence            99999999999999999998776543

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.81  E-value=9.9e-20  Score=129.60  Aligned_cols=137  Identities=22%  Similarity=0.405  Sum_probs=94.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCC--ccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSV--SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSP   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~   78 (151)
                      |.+++.+|+|.|+|.|.|..+...  .....+.+...      ......+|.+.... +....+.+|+.+.|.|.+.|.|
T Consensus       161 I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~------~~~~~~~p~~~~~~-~~~~~~~~G~~v~l~C~~~g~P  233 (384)
T 3kld_A          161 IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRND------GVMGEYEPKIEVQF-PETVPAEKGTTVKLECFALGNP  233 (384)
T ss_dssp             ESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEE------EECCCEEEEEEEEC-CSEEEEETTSCEEEEEEEEEES
T ss_pred             EeecCHHHCceEEEEEecccccceeeCCceEEEEccC------CcccccCCceeecC-CCceEecCCCcEEEEEEEeecC
Confidence            568899999999999999876321  11222222100      01111233333222 1456788999999999999999


Q ss_pred             CCeEEEEeCCeeeEecccC---------------------------------------CCCCCeeeeCCceeEeecCCcE
Q psy16421         79 PPSIMWRREGGEMITNSFN---------------------------------------NTVPPIVKIPSQLIGAHEGQQL  119 (151)
Q Consensus        79 ~~~~~W~~~~~~~~~~~~~---------------------------------------~~~~p~~~~~~~~~~~~~g~~~  119 (151)
                      .|.+.|++.++..+.....                                       +..+|.+...+....+..|+++
T Consensus       234 ~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v  313 (384)
T 3kld_A          234 VPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESV  313 (384)
T ss_dssp             CCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCE
T ss_pred             CCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCE
Confidence            9999999965544322110                                       2345666666677788999999


Q ss_pred             EEEeeecccCCCeeEEEcCCceecc
Q psy16421        120 VLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       120 ~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      .|.|.+.|.|.|.++|+|||..+..
T Consensus       314 ~l~C~~~g~P~p~i~W~k~g~~l~~  338 (384)
T 3kld_A          314 FWECKANGRPKPTYRWLKNGDPLLT  338 (384)
T ss_dssp             EEECEEEEESCCEEEEEETTEECCC
T ss_pred             EEEeECCccCCCeEEEEECCEECCC
Confidence            9999999999999999999877643

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.78  E-value=3.2e-18  Score=116.91  Aligned_cols=127  Identities=17%  Similarity=0.245  Sum_probs=91.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCe-eEeCCCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPD-ILDYPTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++.+|+|.|+|.+.|..+ ..+..+.|.|.             .+|. +...+  ....+.+|+++.|.|.+.+.+.
T Consensus        55 i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~l~V~-------------~~~~~~~~~~--~~~~v~~g~~v~L~C~~~~~~~  118 (289)
T 3ejj_X           55 TRNATFKNTGTYRCTELEDPM-AGSTTIHLYVK-------------DPAHSWNLLA--QEVTVVEGQEAVLPCLITDPAL  118 (289)
T ss_dssp             ESSCCGGGCEEEEEECCC------CEEEEEEEC-------------CSSCSEEESC--SEEEEETTSCEEECEEESCGGG
T ss_pred             EeeeccccCEEEEEEEeccCC-cceeEEEEEEe-------------CCCcceeccc--ceEEEecCCceEeEEEccCCCc
Confidence            568999999999999998877 45566666653             3333 44444  5678889999999999988666


Q ss_pred             Ce-EEEEeCCeeeEecccC-----------------------------------------C----CCCCeeeeCCceeEe
Q psy16421         80 PS-IMWRREGGEMITNSFN-----------------------------------------N----TVPPIVKIPSQLIGA  113 (151)
Q Consensus        80 ~~-~~W~~~~~~~~~~~~~-----------------------------------------~----~~~p~~~~~~~~~~~  113 (151)
                      +. +.|++.++..+.....                                         +    ..+|.+...+....+
T Consensus       119 ~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~  198 (289)
T 3ejj_X          119 KDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVR  198 (289)
T ss_dssp             GGSEEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEEC
T ss_pred             ceEEEEEecCCeecCCCccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEE
Confidence            55 9998756655432111                                         1    156777777777777


Q ss_pred             ecCCcEEEEeeecc-cCCCeeEEEcCCceec
Q psy16421        114 HEGQQLVLECISEA-YPKSVNYWTREKGDMI  143 (151)
Q Consensus       114 ~~g~~~~l~C~~~g-~p~~~~~W~k~~~~~~  143 (151)
                      .+|+++.|.|.+.+ .|.+.+.|++++..+.
T Consensus       199 ~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~  229 (289)
T 3ejj_X          199 IRGEAAQIVCSATNAEVGFNVILKRGDTKLE  229 (289)
T ss_dssp             CSSSCEEEEEEEEESSSCCEEEEEETTEECC
T ss_pred             EeCCcEEEEEEeCCCCCceEEEEEECCEEee
Confidence            89999999999998 7899999999976553

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.78  E-value=2.7e-18  Score=132.18  Aligned_cols=127  Identities=23%  Similarity=0.421  Sum_probs=98.4

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|..| ..+..+.|.|.             .++.+...+  ....+.+|+++.|.|.+.|.|.+
T Consensus       310 i~~v~~~D~G~Y~C~a~n~~g-~~~~~~~l~V~-------------~~~~~~~~~--~~~~v~~G~~v~l~C~~~g~p~~  373 (816)
T 3dmk_A          310 IKDAVVEDSGKYLCVVNNSVG-GESVETVLTVT-------------APLSAKIDP--PTQTVDFGRPAVFTCQYTGNPIK  373 (816)
T ss_dssp             ECSCCGGGCEEEEEEEECSSC-EEEEEEEEEEC-------------EEEEEEEES--SEEECCTTSCEEEEEEEEEECCC
T ss_pred             ECCCCHhHCEEEEEEEEcCCC-ceEEEEEEEEc-------------CCCceeeCC--CceEecCCCCEEEEEEEeccCCC
Confidence            567899999999999999988 44555555553             344444444  46678899999999999999999


Q ss_pred             eEEEEeCCeeeEecccC---------------------------------C---CCCCeeeeCCceeEeecCCcEEEEee
Q psy16421         81 SIMWRREGGEMITNSFN---------------------------------N---TVPPIVKIPSQLIGAHEGQQLVLECI  124 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~---------------------------------~---~~~p~~~~~~~~~~~~~g~~~~l~C~  124 (151)
                      .+.|++ +++.+.....                                 +   ..+|.+...+....+.+|+.+.|.|.
T Consensus       374 ~v~W~k-~g~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~  452 (816)
T 3dmk_A          374 TVSWMK-DGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCV  452 (816)
T ss_dssp             EEEEEE-TTEECSCCSSEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEE
T ss_pred             EEEEEE-CCEECCCCCCEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEE
Confidence            999999 5665443221                                 1   35677777677778899999999999


Q ss_pred             ecccCCCeeEEEcCCceecc
Q psy16421        125 SEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       125 ~~g~p~~~~~W~k~~~~~~~  144 (151)
                      +.|.|.|.+.|+|+|..+..
T Consensus       453 ~~g~p~p~v~W~~~g~~l~~  472 (816)
T 3dmk_A          453 AGGNPTPEISWELDGKKIAN  472 (816)
T ss_dssp             EECSSCCEEEEEETTEECCS
T ss_pred             EecCCCCEEEEEECCEECCC
Confidence            99999999999999776643

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.76  E-value=4.5e-18  Score=118.43  Aligned_cols=126  Identities=17%  Similarity=0.367  Sum_probs=84.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCC----CccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPS----VSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g   76 (151)
                      |.+++.+|+|.|+|.+.|..+..    .+..+.|.|..          ...+|.+. .+   ...+.+|+.+.|.|.+.|
T Consensus        78 I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~----------~p~~p~i~-~~---~~~~~~g~~~~l~C~~~g  143 (327)
T 2wng_A           78 ISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRA----------KPSAPVVS-GP---AARATPQHTVSFTCESHG  143 (327)
T ss_dssp             ECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEB----------CCCCCEEE-CC---SSCBCTTCEEEEEEEEEE
T ss_pred             EccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEe----------cCCCceee-cc---ccccCCCCEEEEEEEEeC
Confidence            57899999999999999986531    12345566531          12334443 22   346778999999999988


Q ss_pred             CCCC--eEEEEeCCeeeEeccc----------------------------C-------------------------CCCC
Q psy16421         77 SPPP--SIMWRREGGEMITNSF----------------------------N-------------------------NTVP  101 (151)
Q Consensus        77 ~~~~--~~~W~~~~~~~~~~~~----------------------------~-------------------------~~~~  101 (151)
                      .|++  .+.|++ +++.+....                            .                         +..+
T Consensus       144 ~p~~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~  222 (327)
T 2wng_A          144 FSPRDITLKWFK-NGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVP  222 (327)
T ss_dssp             EBSSCCEEEEEE-TTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBC
T ss_pred             ccCCCcEEEEEE-CCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCC
Confidence            7765  899999 555443110                            0                         1123


Q ss_pred             CeeeeCCceeEeecCCcEEEEeeecccCC-C-eeEEEcCCceec
Q psy16421        102 PIVKIPSQLIGAHEGQQLVLECISEAYPK-S-VNYWTREKGDMI  143 (151)
Q Consensus       102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~-~~~W~k~~~~~~  143 (151)
                      |.+...+..  +.+|+.+.|.|.+.|.|+ + .+.|+|||..+.
T Consensus       223 P~i~~~~~~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  264 (327)
T 2wng_A          223 PTLEVTQQP--VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSR  264 (327)
T ss_dssp             CEEEEEEEC--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEE
T ss_pred             CEEEEecCC--cCCCCcEEEEEEEccccCCCcEEEEEECCeEcc
Confidence            444333222  568999999999999544 4 699999987664

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.76  E-value=3.9e-18  Score=117.96  Aligned_cols=131  Identities=14%  Similarity=0.261  Sum_probs=90.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCC-CCceEeecCCeEEEEeee-----
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPT-SSDIMVREGSNVSMRCAA-----   74 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~g~~~~l~C~~-----   74 (151)
                      |.+++.+|+|.|+|.+.|..+. ....+.+.+.            ..+|.+...+. .....+.+|+.+.|.|.+     
T Consensus        66 i~~v~~~D~G~Y~C~a~n~~g~-~~~~~~v~v~------------~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~  132 (315)
T 1itb_B           66 FVPAKVEDSGHYYCVVRNSSYC-LRIKISAKFV------------ENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFK  132 (315)
T ss_dssp             CTTCCGGGCSCCEECCCSSSCC-CCEECCCEEE------------CCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTC
T ss_pred             ECCCChhhCEEEEEEEeCCceE-EEEEEEEEEe------------CCCCCcccccccccceEEecCCCeEEEEecccccc
Confidence            6789999999999999998763 3333333321            23343322210 012467789999999998     


Q ss_pred             -cCCCCCeEEEEeCCeeeEecccC-------------------------------------------------CCCCCee
Q psy16421         75 -SGSPPPSIMWRREGGEMITNSFN-------------------------------------------------NTVPPIV  104 (151)
Q Consensus        75 -~g~~~~~~~W~~~~~~~~~~~~~-------------------------------------------------~~~~p~~  104 (151)
                       .|.|.+.+.|++ +++.+.....                                                 ...+|.+
T Consensus       133 ~~g~p~~~i~W~k-~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~  211 (315)
T 1itb_B          133 NENNELPKLQWYK-DCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVI  211 (315)
T ss_dssp             TTTTCCCCCEEEE-TTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEE
T ss_pred             cCCCCCCEEEEEE-CCEECCCccceEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEE
Confidence             889999999999 5555532110                                                 0245555


Q ss_pred             eeCCce-eEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        105 KIPSQL-IGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       105 ~~~~~~-~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      ...+.. ..+.+|+.+.|.|.+.|.|.|.+.|++||..+..+
T Consensus       212 ~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~  253 (315)
T 1itb_B          212 VSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDED  253 (315)
T ss_dssp             CSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTT
T ss_pred             ecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcc
Confidence            554443 57889999999999999999999999997766543

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.76  E-value=4e-18  Score=120.79  Aligned_cols=135  Identities=22%  Similarity=0.357  Sum_probs=94.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCC----CccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPS----VSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g   76 (151)
                      |.+++.+|+|.|+|.+.|..+..    .+..+.|.+...       .....+|.+.... +....+.+|+.+.|.|.+.+
T Consensus       162 i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~-------~~~~~~P~~~~~~-~~~~~~~~G~~v~l~C~~~g  233 (382)
T 1cs6_A          162 IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE-------DARQYAPSIKAKF-PADTYALTGQMVTLECFAFG  233 (382)
T ss_dssp             ESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESC-------CCCCEEEEEEECC-CSEEEEETTCCEEEECEEEE
T ss_pred             EEeeCcccCeeEEEEEEEccccccceeEccceeeccchh-------hcccCCCceeccC-CCceEEeCCCeEEEEEEEcc
Confidence            46789999999999999987521    122344444311       0111245554432 14677889999999999999


Q ss_pred             CCCCeEEEEeCCeeeEecc----cC---------------------------------CCCCCeeeeCCceeEeecCCcE
Q psy16421         77 SPPPSIMWRREGGEMITNS----FN---------------------------------NTVPPIVKIPSQLIGAHEGQQL  119 (151)
Q Consensus        77 ~~~~~~~W~~~~~~~~~~~----~~---------------------------------~~~~p~~~~~~~~~~~~~g~~~  119 (151)
                      .|.+.+.|+++++. +...    ..                                 +..+|.+...+....+.+|+.+
T Consensus       234 ~p~~~i~W~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~  312 (382)
T 1cs6_A          234 NPVPQIKWRKLDGS-QTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDL  312 (382)
T ss_dssp             ESCCEEEEEECCSC-CSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCE
T ss_pred             CCCCEEEEEECCcc-cccEEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeE
Confidence            99999999995443 2210    00                                 2345666666677788999999


Q ss_pred             EEEeeecccCCCeeEEEcCCceecc
Q psy16421        120 VLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       120 ~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      .|.|.+.|.|.|.+.|+|+|..+..
T Consensus       313 ~l~C~~~g~p~p~v~W~~~g~~~~~  337 (382)
T 1cs6_A          313 RWSCVASGKPRPAVRWLRDGQPLAS  337 (382)
T ss_dssp             EEECEEEEESCCEEEEEETTEECCC
T ss_pred             EEEEEeeeecCCEEEEEECCEECCC
Confidence            9999999999999999999876654

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.75  E-value=6.2e-18  Score=122.07  Aligned_cols=123  Identities=11%  Similarity=0.159  Sum_probs=79.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++++|+|.|+|.|.|..| .....+.|.|.             .+|.+...   ....+..|+.+.|.|.+.|.|.|
T Consensus       107 I~~v~~~D~G~Y~C~a~N~~g-~~~~~~~l~V~-------------~~p~~~~~---~p~~~~~~~~~~L~C~a~G~P~P  169 (423)
T 3qs7_E          107 ILKMTETQAGEYLLFIQSEAT-NYTILFTVSIR-------------NTLLYTLR---RPYFRKMENQDALVCISESVPEP  169 (423)
T ss_dssp             ESSCCSSSCSEEEEEEEC--C-EEEEEEEEEEC------------------CEE---EEEEEECSSSSCEEEEEEESSCC
T ss_pred             EeecCcccCEEEEEEEEcCCC-cEEEEEEEEEe-------------cCcccccc---CCcEeccCCceEEEEEEeeecCC
Confidence            568999999999999999987 44455565553             33333211   12234457888999999999999


Q ss_pred             eEEEEeCCeeeEecc------------------c-C---------------------CCCCCeeeeCCceeEeecCCcEE
Q psy16421         81 SIMWRREGGEMITNS------------------F-N---------------------NTVPPIVKIPSQLIGAHEGQQLV  120 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~------------------~-~---------------------~~~~p~~~~~~~~~~~~~g~~~~  120 (151)
                      .+.|++++ ..+...                  . +                     +..+|.+  .+....+.+|+++.
T Consensus       170 ~i~W~k~~-~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~~~~~~v~~G~~v~  246 (423)
T 3qs7_E          170 IVEWVLCD-SQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLW  246 (423)
T ss_dssp             EEEEEEC--------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCS--STTEEEEETTSCEE
T ss_pred             eEEEEECC-CCCccccccccccccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEecCCcc--CCCceEEeCCCeEE
Confidence            99999943 322100                  0 0                     1111111  33456788999999


Q ss_pred             EEeeecc-cCCCeeEEEcCCceec
Q psy16421        121 LECISEA-YPKSVNYWTREKGDMI  143 (151)
Q Consensus       121 l~C~~~g-~p~~~~~W~k~~~~~~  143 (151)
                      |.|.+.| .|.|.+.|+|+|..+.
T Consensus       247 L~C~~~g~~p~p~i~W~k~g~~l~  270 (423)
T 3qs7_E          247 IRCKAVHVNHGFGLTWELENKALE  270 (423)
T ss_dssp             EEEEEEESSSCCCEEEEESSSBCC
T ss_pred             EEEEEEcCCCCcEEEEEECCEEcc
Confidence            9999999 6779999999987553

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.75  E-value=1e-17  Score=114.67  Aligned_cols=121  Identities=18%  Similarity=0.362  Sum_probs=90.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC-
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP-   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~-   79 (151)
                      |.+++.+|+|.|+|.+.|  | . +..+.|.|.             .+|.....+  ..+.+.+|+.+.|.|.+.+ |. 
T Consensus        61 i~~~~~~d~G~Y~C~~~n--g-~-~~~~~l~V~-------------~~~~~~~~~--~~~~~~~g~~v~l~C~~~~-p~~  120 (290)
T 2o26_X           61 QEKAEATRTGTYTCSNSN--G-L-TSSIYVFVR-------------DPAKLFLVG--LPLFGKEDSDALVRCPLTD-PQV  120 (290)
T ss_dssp             ETTCCGGGCEEEEEEESS--S-C-EEEEEEEEE-------------CSSCCBCCC--CCEEEETTSCEEECCCBSC-CSC
T ss_pred             EeccCHHhCeEEEEEeeC--C-c-cEEEEEEEe-------------CCCcccccc--cceEEecCCeEEEeCcCCC-CCC
Confidence            568899999999999999  4 2 555666654             344443333  5678889999999999986 77 


Q ss_pred             CeEEEEeCCeeeEecccC----------------------------------------------CCCCCeeeeCCceeEe
Q psy16421         80 PSIMWRREGGEMITNSFN----------------------------------------------NTVPPIVKIPSQLIGA  113 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~----------------------------------------------~~~~p~~~~~~~~~~~  113 (151)
                      +.+.|++.+++.+.....                                              ...+|.+...+....+
T Consensus       121 ~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v  200 (290)
T 2o26_X          121 SQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLL  200 (290)
T ss_dssp             EEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCC
T ss_pred             ceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceE
Confidence            899996546655422110                                              1156667666666688


Q ss_pred             ecCCcEEEEeeecccCCCe-eEEEcCCce
Q psy16421        114 HEGQQLVLECISEAYPKSV-NYWTREKGD  141 (151)
Q Consensus       114 ~~g~~~~l~C~~~g~p~~~-~~W~k~~~~  141 (151)
                      .+|+++.|.|.+.|.|.|. +.|+|+|..
T Consensus       201 ~~G~~v~l~C~~~g~p~p~~i~W~~~~~~  229 (290)
T 2o26_X          201 KKGDTFTVVCTIKDVSTSVNSMWLKMNPQ  229 (290)
T ss_dssp             CTTCCEEEEEEEEESSTTCEEEEEEESSS
T ss_pred             ecCCcEEEEEEEecCCcceeEEEecCCCC
Confidence            9999999999999999997 999999776

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.75  E-value=7.9e-18  Score=119.79  Aligned_cols=138  Identities=20%  Similarity=0.299  Sum_probs=95.6

Q ss_pred             CccccccC-CeEEEEEEEcCCCCCC--ccceEEEEeccccceeEEeecCCCCeeEeCCC-CCceEeecCCeEEEEeeecC
Q psy16421          1 MTEVSREH-MGAYLCIASNGVPPSV--SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPT-SSDIMVREGSNVSMRCAASG   76 (151)
Q Consensus         1 i~~v~~~d-~G~Y~C~~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~g~~~~l~C~~~g   76 (151)
                      |.+++.+| .|.|+|.+.|..+...  ...+.+.+....      .....+|.+..... .....+.+|+.+.|.|.+.|
T Consensus       175 i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~------~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g  248 (404)
T 3p3y_A          175 FSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTR------GVAERTPSFMYPQGTASSQMVLRGMDLLLECIASG  248 (404)
T ss_dssp             ESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCS------CCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCC
T ss_pred             EEeeeeccCCcceEEEEEeccccceeccCceeEEEeccC------CccccCCccccccCCCCCceEecCCCEEEEEEECC
Confidence            46788899 5999999999877432  223445543111      01123444433221 12356788999999999999


Q ss_pred             CCCCeEEEEeCCeeeEeccc-------C---------------------------------CCCCCeeeeCCceeEeecC
Q psy16421         77 SPPPSIMWRREGGEMITNSF-------N---------------------------------NTVPPIVKIPSQLIGAHEG  116 (151)
Q Consensus        77 ~~~~~~~W~~~~~~~~~~~~-------~---------------------------------~~~~p~~~~~~~~~~~~~g  116 (151)
                      .|.+.+.|++ ++..+....       .                                 +..+|.+...+....+.+|
T Consensus       249 ~p~~~v~W~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g  327 (404)
T 3p3y_A          249 VPTPDIAWYK-KGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPG  327 (404)
T ss_dssp             SSCCEEEEEE-TTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEECTT
T ss_pred             CCCCcEEEEE-CCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceeecC
Confidence            9999999999 454433211       0                                 2345666667777888999


Q ss_pred             CcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        117 QQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       117 ~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      +.+.|.|.+.|.|.|.+.|+|+|..+..+
T Consensus       328 ~~~~l~C~~~g~p~p~v~W~~~g~~~~~~  356 (404)
T 3p3y_A          328 EDGRLVCRANGNPKPTVQWMVNGEPLQSA  356 (404)
T ss_dssp             CCEEEECEEEEESCCEEEEEETTEEGGGS
T ss_pred             CcEEEEEEccccCCCceEEEECCEecCCC
Confidence            99999999999999999999998776543

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.75  E-value=2.5e-17  Score=117.23  Aligned_cols=126  Identities=25%  Similarity=0.396  Sum_probs=89.3

Q ss_pred             cccccCCeEEEEEEEcCC-CCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCe
Q psy16421          3 EVSREHMGAYLCIASNGV-PPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPS   81 (151)
Q Consensus         3 ~v~~~d~G~Y~C~~~~~~-~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~   81 (151)
                      +++.+|+|.|+|.+.+.. +...+..+.+.|.             .+|.+...+  ....+.+|+++.|.|.+.+.|.+.
T Consensus        88 ~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~-------------~p~~~~~~~--~~~~~~~G~~v~l~C~~~~~p~~~  152 (403)
T 3laf_A           88 RHHKPDEGLYQCEASLGDSGSIISRTAKVMVA-------------GPLRFLSQT--ESITAFMGDTVLLKCEVIGDPMPT  152 (403)
T ss_dssp             TTBCSSCEEEEEEEECGGGCEEECCCEEEEEC-------------CCCEECSCC--CCEEEETTSCEEECCCEECSSCCE
T ss_pred             CCCCCcceEEEEEEEeCCCccEEEEEEEEEec-------------CCCccccCC--CcEEEEcCCeEEEEEEEcccCCCe
Confidence            347889999999999653 3233445555543             566665555  567888999999999999999999


Q ss_pred             EEEEeCCeeeEeccc----------C----------------------------------CCCCC------eeeeCCcee
Q psy16421         82 IMWRREGGEMITNSF----------N----------------------------------NTVPP------IVKIPSQLI  111 (151)
Q Consensus        82 ~~W~~~~~~~~~~~~----------~----------------------------------~~~~p------~~~~~~~~~  111 (151)
                      +.|++ +++.+....          .                                  +..+|      .+...+...
T Consensus       153 v~W~~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~  231 (403)
T 3laf_A          153 IHWQK-NQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNV  231 (403)
T ss_dssp             EEEEE-SSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCE
T ss_pred             EEEEE-CCEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCce
Confidence            99999 444432100          0                                  00111      233345566


Q ss_pred             EeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        112 GAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       112 ~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      .+.+|+.+.|.|.+.|.|.+.+.|+|++..+..
T Consensus       232 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  264 (403)
T 3laf_A          232 IAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQL  264 (403)
T ss_dssp             EEETTSCEEECCEEEEESCCEEEEEETTEECCC
T ss_pred             EecCCCcEEEEEEcCCCCCCeEEEEECCeeccC
Confidence            788999999999999999999999998766543

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.75  E-value=2.8e-17  Score=116.98  Aligned_cols=128  Identities=28%  Similarity=0.470  Sum_probs=88.7

Q ss_pred             cccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeee-cCCCCCe
Q psy16421          3 EVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA-SGSPPPS   81 (151)
Q Consensus         3 ~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~~~~~   81 (151)
                      +++.+|+|.|+|.+.|..|...+..+.|.|.             .+|.+..... ....+.+|+.+.|.|.+ .+.|.+.
T Consensus        83 ~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~-------------~~p~~~~~~~-~~~~v~~G~~v~l~C~~~~~~p~~~  148 (404)
T 3p3y_A           83 GRPEEYEGEYQCFARNKFGTALSNRIRLQVS-------------KSPLWPKENL-DPVVVQEGAPLTLQCNPPPGLPSPV  148 (404)
T ss_dssp             CCTTSSCEEEEEEEECSSCEEEEEEEEEEEC-------------CCCCCCCCCC-CCEEEETTSCEEECCCCCCCSSCCE
T ss_pred             CCCccCCEEEEEEEEcCCCeEeeeeEEEEEe-------------ccCccccCCC-CCeEEccCCcEEEEeCCCCCCCCCe
Confidence            6788999999999999988544556666653             3443322221 45788899999999998 8889999


Q ss_pred             EEEEeCCeeeEecccC----------------------------C-----------------------CCCCeeeeCC--
Q psy16421         82 IMWRREGGEMITNSFN----------------------------N-----------------------TVPPIVKIPS--  108 (151)
Q Consensus        82 ~~W~~~~~~~~~~~~~----------------------------~-----------------------~~~p~~~~~~--  108 (151)
                      +.|++++...+.....                            +                       ..+|.+....  
T Consensus       149 v~W~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~  228 (404)
T 3p3y_A          149 IFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGT  228 (404)
T ss_dssp             EEEECTTSCBCCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSS
T ss_pred             EEEeCCCccccCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCC
Confidence            9999954333221110                            0                       0112222211  


Q ss_pred             -ceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        109 -QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       109 -~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                       ....+.+|+.+.|.|.+.|.|.+.+.|+|+|..+..
T Consensus       229 ~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~  265 (404)
T 3p3y_A          229 ASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPS  265 (404)
T ss_dssp             EEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCT
T ss_pred             CCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCC
Confidence             245688999999999999999999999999876543

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.74  E-value=7.7e-18  Score=116.60  Aligned_cols=126  Identities=21%  Similarity=0.303  Sum_probs=85.0

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeee-cCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA-SGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~~~   79 (151)
                      |.+++.+|+|.|+|.+.+..+...+..+.|             .+..+|.+....  ....+..++.+.+.|.+ .+.|.
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l-------------~v~~~P~~~~~~--~~~~~~~~~~~~~~C~~~~~~P~  147 (313)
T 4fqp_A           83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWL-------------RVLAKPQNTAEV--QKVQLTGEPVPMARCVSTGGRPP  147 (313)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEEEEE-------------CCBBCCEEEEEE--CCBCCCSSCEEEEEEEEEEEBSC
T ss_pred             ECcCChhhCEEEEEEEeeccCcceeeeeee-------------eeccCCcceecc--cceEeecCceEEEEEEccCccCC
Confidence            578999999999999866543233333333             334556655444  34556678889999985 57899


Q ss_pred             CeEEEEeCCeeeEecccC------------------------------------------------CCCCCeeeeC-Cce
Q psy16421         80 PSIMWRREGGEMITNSFN------------------------------------------------NTVPPIVKIP-SQL  110 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~------------------------------------------------~~~~p~~~~~-~~~  110 (151)
                      +.+.|+++ +..+.....                                                +..+|.+.+. ...
T Consensus       148 ~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~  226 (313)
T 4fqp_A          148 AQITWHSD-LGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDN  226 (313)
T ss_dssp             CEEEEEET-TCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCS
T ss_pred             cEEEeecC-CccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccc
Confidence            99999994 333221100                                                2234555433 344


Q ss_pred             eEeecCCcEEEEeeecccCCC-eeEEEcCCcee
Q psy16421        111 IGAHEGQQLVLECISEAYPKS-VNYWTREKGDM  142 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~-~~~W~k~~~~~  142 (151)
                      ..+.+|+.+.|.|.+.|+|.| .|.|+|+|+.+
T Consensus       227 ~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l  259 (313)
T 4fqp_A          227 NWYLGQNEATLTCDARSNPEPTGYNWSTTMGPL  259 (313)
T ss_dssp             CEETTCCCEEEEEEEEEESCCCEEEEEETTBSC
T ss_pred             eeecCCCeEEEEEEecCCCCCcEEEEEECCEEC
Confidence            456778999999999999999 59999998755

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.74  E-value=2e-18  Score=119.16  Aligned_cols=127  Identities=18%  Similarity=0.322  Sum_probs=85.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCee--EeCCCCCceEeecCCeEEEEee-ecCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDI--LDYPTSSDIMVREGSNVSMRCA-ASGS   77 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~g~~~~l~C~-~~g~   77 (151)
                      |.+++.+|+|.|+|.|.|..+...+..+.+.+.             ..|..  ...+  .......|+.+.|.|. +.|.
T Consensus        78 I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~-------------~~~~~~~~~~~--~~~~~~~~~~~~l~C~~~~g~  142 (308)
T 4fom_A           78 LHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVL-------------VEPTVSLIKGP--DSLIDGGNETVAAICIAATGK  142 (308)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEE-------------BCCEEEEEECS--SCCCTTCSCEEEEEEEEEEEB
T ss_pred             EccCCHHHCEEEEEEEeeCCCcceeeeeEEEee-------------ecccccccccc--ceeEEcCCceEEEEEEecCCc
Confidence            578999999999999998754344445555543             22222  2222  3445567889999998 4789


Q ss_pred             CCCeEEEEeCCeeeEecccC----------------------------------------------CCCCCeeeeC-Cce
Q psy16421         78 PPPSIMWRREGGEMITNSFN----------------------------------------------NTVPPIVKIP-SQL  110 (151)
Q Consensus        78 ~~~~~~W~~~~~~~~~~~~~----------------------------------------------~~~~p~~~~~-~~~  110 (151)
                      |.+.+.|+++ ++.+.....                                              +..+|.+... ...
T Consensus       143 P~~~i~W~~~-~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~  221 (308)
T 4fom_A          143 PVAHIDWEGD-LGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDG  221 (308)
T ss_dssp             SCCEEEECCC-SSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCS
T ss_pred             CCceEEEEEC-CcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccce
Confidence            9999999994 443321100                                              2234444433 334


Q ss_pred             eEeecCCcEEEEeeecccCCC-eeEEEcCCceec
Q psy16421        111 IGAHEGQQLVLECISEAYPKS-VNYWTREKGDMI  143 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~-~~~W~k~~~~~~  143 (151)
                      ..+..|+.+.|.|.+.|.|+| .+.|+|++..+.
T Consensus       222 ~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~  255 (308)
T 4fom_A          222 NWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWP  255 (308)
T ss_dssp             CEETTCCSCEEECCEEEESCEEEEECCBSSSCCC
T ss_pred             eeeeccccEEEEEEEecCCCCcEEEEEECCeECC
Confidence            456778999999999999998 599999876553

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.74  E-value=1.5e-17  Score=122.40  Aligned_cols=134  Identities=17%  Similarity=0.296  Sum_probs=95.7

Q ss_pred             CccccccCCe-EEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSREHMG-AYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++.+|+| .|+|.+.|..+...+..+.|.|.         .....+|.+...+  ....+.+|+.+.|.|.+.+.|.
T Consensus       172 i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~---------~~~~~~p~i~~~~--~~~~v~~G~~v~L~C~~~g~p~  240 (524)
T 2ec8_A          172 IKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVR---------PAFKAVPVVSVSK--ASYLLREGEEFTVTCTIKDVSS  240 (524)
T ss_dssp             EESCCGGGTTCEEEEEEC----CCCCCCEECCEE---------CCCCSCCEEECSC--SEEEEETTSCEEEEEEEEESST
T ss_pred             EeccchhhCCceEEEEEEECCceEEEEEEEEEEE---------eCCCCCCcEEecC--CcceEEcCCcEEEEEEEecCCC
Confidence            4678999999 99999999877555557777664         1223678887766  5668889999999999999888


Q ss_pred             Ce-EEEEeCCeee-Eecc-------c-C--------------------------------------CCCCCeeeeCC---
Q psy16421         80 PS-IMWRREGGEM-ITNS-------F-N--------------------------------------NTVPPIVKIPS---  108 (151)
Q Consensus        80 ~~-~~W~~~~~~~-~~~~-------~-~--------------------------------------~~~~p~~~~~~---  108 (151)
                      +. +.|++++... +...       . .                                      +..+|.+...+   
T Consensus       241 p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~  320 (524)
T 2ec8_A          241 SVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMIN  320 (524)
T ss_dssp             TCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSC
T ss_pred             cEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCC
Confidence            87 9999954431 1100       0 0                                      23455554432   


Q ss_pred             ceeEeecCCcEEEEeeecccCCCe-eEEEcCCceeccC
Q psy16421        109 QLIGAHEGQQLVLECISEAYPKSV-NYWTREKGDMIAN  145 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g~p~~~-~~W~k~~~~~~~~  145 (151)
                      ....+.+|+.+.|.|.+.|.|.|. +.|+|+|..+...
T Consensus       321 ~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~  358 (524)
T 2ec8_A          321 TTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDK  358 (524)
T ss_dssp             SEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSS
T ss_pred             ceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCC
Confidence            367889999999999999999999 9999998766543

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.73  E-value=8.4e-18  Score=121.38  Aligned_cols=122  Identities=12%  Similarity=0.211  Sum_probs=86.6

Q ss_pred             cccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CCCCeEE
Q psy16421          5 SREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SPPPSIM   83 (151)
Q Consensus         5 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~~~~~~   83 (151)
                      ...|+|.|+|.|.|..|......+.|.|             ..+|.+  .+  ....+.+|+.+.|.|.+.| .|.|.+.
T Consensus       199 ~~~d~G~Y~C~A~N~~G~~~~~~~~l~V-------------~~~p~~--~~--~~~~v~~G~~v~L~C~~~g~~p~p~i~  261 (423)
T 3qs7_E          199 HELFGTDIRCCARNELGRECTRLFTIDL-------------NQTPQT--TL--PQLFLKVGEPLWIRCKAVHVNHGFGLT  261 (423)
T ss_dssp             CCCCSSCEEEEEECSSCEEEEECEEEES-------------SSCCCS--ST--TEEEEETTSCEEEEEEEEESSSCCCEE
T ss_pred             ecccCeEEEEEEEcCCCCcceeeEEEEE-------------ecCCcc--CC--CceEEeCCCeEEEEEEEEcCCCCcEEE
Confidence            4689999999999998854333344443             334433  22  3567889999999999988 6779999


Q ss_pred             EEeCCeeeEecc----------c-------C-----------------------------CCCCCeeeeCC--ceeEeec
Q psy16421         84 WRREGGEMITNS----------F-------N-----------------------------NTVPPIVKIPS--QLIGAHE  115 (151)
Q Consensus        84 W~~~~~~~~~~~----------~-------~-----------------------------~~~~p~~~~~~--~~~~~~~  115 (151)
                      |+++ ++.+...          .       .                             +..+|.+...+  ....+.+
T Consensus       262 W~k~-g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~~~~~~L~V~~~p~i~~~~~~~~~~v~~  340 (423)
T 3qs7_E          262 WELE-NKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQ  340 (423)
T ss_dssp             EEES-SSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTEEEEEEEEEEESSCEEEEC---CEECCCT
T ss_pred             EEEC-CEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecCCCceEEEEEEeCCcceEcCCCccEEecC
Confidence            9994 4432111          0       0                             22345554433  3556789


Q ss_pred             CCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        116 GQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       116 g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      |+++.|.|.+.|.|.|.++|+|+|..+..
T Consensus       341 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~  369 (423)
T 3qs7_E          341 YEEFCFSVRFKAYPQIRCTWTFSRKSFPC  369 (423)
T ss_dssp             TCCCCEEEEEEEESCCEEEEEETTEEEEC
T ss_pred             CCeEEEEEEEEEcCCCeEEEEECCEECCC
Confidence            99999999999999999999999877644

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.73  E-value=8.9e-17  Score=120.89  Aligned_cols=128  Identities=18%  Similarity=0.280  Sum_probs=90.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCC-ccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSV-SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++.+|+|.|+|.|.|..|... +..+.+.|..          ...+|.+...   ....+.+|+.+.|.|.+.+ +.
T Consensus       430 i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~----------~~~~p~i~~~---~~~~v~~g~~v~l~C~~~~-~~  495 (642)
T 1e07_A          430 ISNITEKNSGLYTCQANNSASGHSRTTVKTITVSA----------ELPKPSISSN---NSKPVEDKDAVAFTCEPEA-QN  495 (642)
T ss_pred             EccCChhhCeEEEEEEEcCCCCCcccceEEEEEec----------cCCCceEecC---CceeecCCCeEEEEEECCC-CC
Confidence            567899999999999999987432 2223444421          1234555442   3466779999999999985 88


Q ss_pred             CeEEEEeCCeeeEecccC------------------------------------------C-CCCCeeeeCCceeEeecC
Q psy16421         80 PSIMWRREGGEMITNSFN------------------------------------------N-TVPPIVKIPSQLIGAHEG  116 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~------------------------------------------~-~~~p~~~~~~~~~~~~~g  116 (151)
                      +.+.|++ +++.+....+                                          + ..|+.+...+....+.+|
T Consensus       496 ~~i~W~~-~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g  574 (642)
T 1e07_A          496 TTYLWWV-NGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSG  574 (642)
T ss_pred             cEEEEEE-CCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcC
Confidence            9999999 5555432110                                          0 123334445566778999


Q ss_pred             CcEEEEeeecccCCCeeEEEcCCceec
Q psy16421        117 QQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       117 ~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      +.+.|.|.+.|.|.|.+.|+|||..+.
T Consensus       575 ~~~~l~C~~~g~p~p~v~W~~~g~~i~  601 (642)
T 1e07_A          575 ANLNLSCHSASNPSPQYSWRINGIPQQ  601 (642)
T ss_pred             CcEEEEEEeccCCCCeEEEEECCEECc
Confidence            999999999999999999999977654

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.73  E-value=3.8e-17  Score=116.04  Aligned_cols=137  Identities=16%  Similarity=0.271  Sum_probs=90.2

Q ss_pred             CccccccCCe---EEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC
Q psy16421          1 MTEVSREHMG---AYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS   77 (151)
Q Consensus         1 i~~v~~~d~G---~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~   77 (151)
                      |.+++.+|+|   .|+|.+.|..+.... .....................+|.+.  +  ....+.+|+.+.|.|.+.|.
T Consensus       165 i~~v~~~d~G~~~~Y~C~a~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~--~--~~~~~~~G~~v~l~C~~~g~  239 (395)
T 1bih_A          165 FTIVTKEDVSDIYKYVCTAKNAAVDEEV-VLVEYEIKGVTKDNSGYKGEPVPQYV--S--KDMMAKAGDVTMIYCMYGSN  239 (395)
T ss_dssp             EEEECGGGCCSSEEEEEEEECTTCSSCE-EEEEEEECCCBCCSSCCCCCCEEEEE--C--CSEEEETTSCEEEEEEEECS
T ss_pred             EEEEeeccCCCceEEEEEEEecccceEE-EeeeEEecccccccccccCCcCceec--C--CceEEECCCcEEEEEEeccC
Confidence            4578899999   999999999884322 21111100000000000001133332  2  46788899999999999999


Q ss_pred             CCCeEEEEeCCeeeEeccc-------------C---------------------------------CCCCCeeeeCCce-
Q psy16421         78 PPPSIMWRREGGEMITNSF-------------N---------------------------------NTVPPIVKIPSQL-  110 (151)
Q Consensus        78 ~~~~~~W~~~~~~~~~~~~-------------~---------------------------------~~~~p~~~~~~~~-  110 (151)
                      |.+.+.|++ +++.+....             .                                 +..+|.+...+.. 
T Consensus       240 p~~~i~W~~-~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~  318 (395)
T 1bih_A          240 PMGYPNYFK-NGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKV  318 (395)
T ss_dssp             SCCCCEEEE-TTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSE
T ss_pred             CCCeEEEEE-CCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcc
Confidence            999999999 455443210             0                                 1234555555555 


Q ss_pred             eEeecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421        111 IGAHEGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      ..+.+|+++.|.|.+.|.|.|.+.|+|+|..+.
T Consensus       319 ~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~  351 (395)
T 1bih_A          319 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS  351 (395)
T ss_dssp             EEECTTSCEEEECEEEEESCCCCEEEETTEECC
T ss_pred             eEecCCCeEEEEEEECcccCCeeEEEECCEECC
Confidence            678999999999999999999999999977654

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.73  E-value=2e-17  Score=115.43  Aligned_cols=129  Identities=12%  Similarity=0.203  Sum_probs=86.2

Q ss_pred             CccccccCCe-EEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCC-
Q psy16421          1 MTEVSREHMG-AYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSP-   78 (151)
Q Consensus         1 i~~v~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~-   78 (151)
                      |.+++.+|+| .|+|.|.|..|......+. .+.            ..+|.+....  ....+.+|+.+.|.|.+.|.| 
T Consensus        93 i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~-~v~------------~~~p~~~~~~--~~~~~~~G~~v~L~C~~~g~p~  157 (329)
T 3oq3_B           93 IANYTSNDSHRRYLCTVTTKNGDCVQGIVR-SHI------------RKPPSCIPET--YELGTHDKYGIDLYCGILYAKH  157 (329)
T ss_dssp             ESSCCGGGGGCCEEEEEECTTSCEEEEEEE-EEE------------CCCCSCEEEE--EETTSSTTTCEEEECCCCSCCC
T ss_pred             EcCCChHhCCCcEEEEEEeCCCceeeEEEE-EEE------------cCCCcEeccc--cceEEeCCCcEEEEeccCCCCC
Confidence            5688999999 9999999988742222222 221            2344433322  123356799999999999999 


Q ss_pred             CCeEEEEeCCeeeEeccc-C--------------------------CC-------------------CCC----eeeeCC
Q psy16421         79 PPSIMWRREGGEMITNSF-N--------------------------NT-------------------VPP----IVKIPS  108 (151)
Q Consensus        79 ~~~~~W~~~~~~~~~~~~-~--------------------------~~-------------------~~p----~~~~~~  108 (151)
                      .+.+.|++ ++..+.... .                          +.                   .+|    .+. .+
T Consensus       158 ~~~i~W~k-~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~  235 (329)
T 3oq3_B          158 YNNITWYK-NNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LD  235 (329)
T ss_dssp             CCEEEEEE-TTEECCCSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CC
T ss_pred             CceEEEEE-CCccCCCCCceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cC
Confidence            89999999 455442110 0                          10                   111    111 34


Q ss_pred             ceeEeecCCcEEEEeeecccC---CC-eeEEEcCCceeccCC
Q psy16421        109 QLIGAHEGQQLVLECISEAYP---KS-VNYWTREKGDMIANG  146 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g~p---~~-~~~W~k~~~~~~~~~  146 (151)
                      ....+.+|+++.|.|.+.|.|   .| .+.|+|+|..+...+
T Consensus       236 ~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~  277 (329)
T 3oq3_B          236 PKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLD  277 (329)
T ss_dssp             SEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBC
T ss_pred             CeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccC
Confidence            456788999999999999998   77 799999988754433

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.73  E-value=4.8e-17  Score=119.75  Aligned_cols=130  Identities=17%  Similarity=0.308  Sum_probs=88.0

Q ss_pred             CccccccCCeEEEEEEEcCCCCC--CccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPS--VSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSP   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~   78 (151)
                      |.+++.+|+|.|+|.+.|..|..  ....+.|.|..         ....+|.+...+  ....+.+|+.+.|.|.+.|.+
T Consensus        74 I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~---------~~~~~P~~~~~~--~~~~~~~g~~v~l~C~~~g~~  142 (523)
T 2rcj_C           74 ISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLG---------QPKANPTVTLFP--PSSEELQANKATLVCLISDFY  142 (523)
T ss_pred             ECCCChhhCEEEEEEEccCCCccccccCceEEEecc---------CCCcCCeEEecC--CcccccCCCceEEEEEecccc
Confidence            57899999999999999986532  22445665531         113566666554  344566799999999999877


Q ss_pred             CC--eEEEEeCCeeeEecc----------c-------------------C------------------------CCCCCe
Q psy16421         79 PP--SIMWRREGGEMITNS----------F-------------------N------------------------NTVPPI  103 (151)
Q Consensus        79 ~~--~~~W~~~~~~~~~~~----------~-------------------~------------------------~~~~p~  103 (151)
                      ++  .+.|++ +++.+...          .                   +                        ...+|.
T Consensus       143 p~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~  221 (523)
T 2rcj_C          143 PGAVTVAWKA-DGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPS  221 (523)
T ss_pred             CCceEEEEec-CCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCE
Confidence            54  899999 55443210          0                   0                        012344


Q ss_pred             eeeCCceeEeecCCcEEEEeeeccc-CCC-eeEEEcCCcee
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAY-PKS-VNYWTREKGDM  142 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~k~~~~~  142 (151)
                      +........+.+|+.+.|.|.+.|. |.| .++|+|+|..+
T Consensus       222 v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~  262 (523)
T 2rcj_C          222 VFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTS  262 (523)
T ss_pred             EEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCccc
Confidence            4433333456799999999999986 878 79999997653

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.73  E-value=2.7e-17  Score=121.65  Aligned_cols=116  Identities=16%  Similarity=0.241  Sum_probs=77.8

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.|.|.    .+..+.|.|             ..+|.+...+....+.+.+|+.+.|.|.+.|.|.|
T Consensus       294 I~~v~~~DsG~Y~C~a~N~----~~~~~~L~V-------------~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p  356 (527)
T 3qs9_E          294 VSSVARNDTGYYTCSSSKH----PSQSALVTI-------------VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI  356 (527)
T ss_dssp             ESSCCGGGCEEEEEEETTE----EEEEEEEEE-------------C--CEEECCCSCCEECCCTTCCCCEEEEEEEESCC
T ss_pred             EccCCcccCeEEEEEEEeC----CCceEEEEE-------------EccCccccccCcccEEEcCCCeEEEEEEEEecCCC
Confidence            5688999999999999887    344455554             34555544432234667789999999999999999


Q ss_pred             eEEEEeCCeeeEecccC---------------------------------------CCCCCeeeeCCceeEeecCCcEEE
Q psy16421         81 SIMWRREGGEMITNSFN---------------------------------------NTVPPIVKIPSQLIGAHEGQQLVL  121 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~---------------------------------------~~~~p~~~~~~~~~~~~~g~~~~l  121 (151)
                      .+.|++ +++.+.....                                       +..+|.|....        ....|
T Consensus       357 ~i~W~k-~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~~~--------~~~~l  427 (527)
T 3qs9_E          357 RCTWTF-SRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEA--------SASQA  427 (527)
T ss_dssp             EEEEEE-TTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEEECC--------CCE--
T ss_pred             EEEEEE-CCEECcCCcccccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEEEeC--------CCCEE
Confidence            999999 6666643321                                       23445554432        12357


Q ss_pred             EeeecccCCCeeEEEcCCcee
Q psy16421        122 ECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       122 ~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      .|.+.|.|.|.|+|+++++..
T Consensus       428 ~C~a~g~P~p~i~W~~~~~~~  448 (527)
T 3qs9_E          428 SCFSDGYPLPSWTWKKCSDKS  448 (527)
T ss_dssp             -EEEECSSCCEEEEECCC---
T ss_pred             EEEEEEEcCCeEEEEECCCCc
Confidence            999999999999999876543

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.72  E-value=3.6e-17  Score=113.73  Aligned_cols=129  Identities=21%  Similarity=0.314  Sum_probs=87.6

Q ss_pred             CccccccCCeEEEEEEE-cCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecC---CeEEEEee-ec
Q psy16421          1 MTEVSREHMGAYLCIAS-NGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREG---SNVSMRCA-AS   75 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~-~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g---~~~~l~C~-~~   75 (151)
                      |.+++.+|+|.|+|.+. +..+ .....+.|.|.             .+|.+........+.+.+|   +.+.|.|. +.
T Consensus        96 I~~v~~~D~G~Y~C~~~~~~~~-~~~~~~~l~V~-------------~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~  161 (331)
T 3u83_A           96 LSRLELEDEGVYICEFATFPTG-NRESQLNLTVM-------------AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSAN  161 (331)
T ss_dssp             ECSCCGGGCEEEEEEEEEETTE-EEEEEEEEEEE-------------BCCEEEEEECSSCEEECTTCCCCEEEEEEEEEE
T ss_pred             EcccCcccCcEEEEEEEecCCC-ccEEEEEEEEe-------------cCCcceeecCCCceeecCCCccceEEEEEEecC
Confidence            56889999999999854 4444 45555666554             4555533222256777788   78999998 88


Q ss_pred             CCCCCeEEEEeCCe-eeEe----cccC---------------------------------------CCCCCeeeeC-Cce
Q psy16421         76 GSPPPSIMWRREGG-EMIT----NSFN---------------------------------------NTVPPIVKIP-SQL  110 (151)
Q Consensus        76 g~~~~~~~W~~~~~-~~~~----~~~~---------------------------------------~~~~p~~~~~-~~~  110 (151)
                      +.|.+.+.|++++. ....    ....                                       +..+|.+... ...
T Consensus       162 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~  241 (331)
T 3u83_A          162 GKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDG  241 (331)
T ss_dssp             EBSCCEEEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCS
T ss_pred             CcCCceEEEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCC
Confidence            89999999998321 1100    0000                                       1234554433 344


Q ss_pred             eEeecCCcEEEEeeecccCCCe-eEEEcCCceec
Q psy16421        111 IGAHEGQQLVLECISEAYPKSV-NYWTREKGDMI  143 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~~-~~W~k~~~~~~  143 (151)
                      ..+.+|+.+.|.|.+.|.|.|. +.|+|++..+.
T Consensus       242 ~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~  275 (331)
T 3u83_A          242 NWYLQRMDVKLTCKADANPPATEYHWTTLNGSLP  275 (331)
T ss_dssp             CCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCC
T ss_pred             ceEeCCCeEEEEEeCcCCCCCCEEEEEECCCccc
Confidence            4578899999999999999998 99999877553

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.72  E-value=2.2e-17  Score=122.12  Aligned_cols=124  Identities=12%  Similarity=0.213  Sum_probs=88.0

Q ss_pred             ccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeec-CCCCCeE
Q psy16421          4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAAS-GSPPPSI   82 (151)
Q Consensus         4 v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-g~~~~~~   82 (151)
                      +...|+|.|+|.|.|..|......+.|.|             ..+|.+  .+  ....+.+|+.+.|.|.+. +.|.+.+
T Consensus       198 ~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V-------------~~~p~~--~p--~~~~v~~G~~v~L~C~~~~g~p~p~i  260 (527)
T 3qs9_E          198 LHELFGTDIRCCARNELGRECTRLFTIDL-------------NQTPQT--TL--PQLFLKVGEPLWIRCKAVHVNHGFGL  260 (527)
T ss_dssp             ECCCCSSCEEEEEECSSCEEEEECEEEES-------------SSCCCC--SC--CEEEECTTSCEEEEEEEEESSSCCCE
T ss_pred             ccccCCEEEEEEEEeCCCcccceEEEEEE-------------eccCcc--CC--CceEEeCCCeEEEEEEEccCCCCeEE
Confidence            45789999999999998854443345443             344544  22  467888999999999996 8999999


Q ss_pred             EEEeCCeeeEecc-----------------------cC-----------------------CCCCCeeeeCC--ceeEee
Q psy16421         83 MWRREGGEMITNS-----------------------FN-----------------------NTVPPIVKIPS--QLIGAH  114 (151)
Q Consensus        83 ~W~~~~~~~~~~~-----------------------~~-----------------------~~~~p~~~~~~--~~~~~~  114 (151)
                      .|+++ ++.+...                       .-                       +..+|.+...+  ....+.
T Consensus       261 ~W~k~-g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~L~V~~~p~i~~~~~~~~~~v~  339 (527)
T 3qs9_E          261 TWELE-NKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEID  339 (527)
T ss_dssp             EEECS-SSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTEEEEEEEEEEC--CEEECCCSCCEECCC
T ss_pred             EEEEC-CEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeCCCceEEEEEEccCccccccCcccEEEc
Confidence            99994 4432110                       00                       22344444332  345678


Q ss_pred             cCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        115 EGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       115 ~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      +|+.+.|.|.+.|.|.|.++|+|+|..+..+
T Consensus       340 ~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~  370 (527)
T 3qs9_E          340 QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE  370 (527)
T ss_dssp             TTCCCCEEEEEEEESCCEEEEEETTEEEECB
T ss_pred             CCCeEEEEEEEEecCCCEEEEEECCEECcCC
Confidence            8999999999999999999999998776543

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.72  E-value=1.9e-17  Score=114.08  Aligned_cols=138  Identities=10%  Similarity=0.083  Sum_probs=88.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeec-CCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAAS-GSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-g~~~   79 (151)
                      |.+++.+|+|.|+|.+.|..|...  .+.+.|........ ......+|.+...+. ....+.+|+.+.|.|.+. +.|.
T Consensus        62 I~~~~~~D~G~Y~C~~~n~~g~~~--s~~l~v~~~~~~~~-~~~~~~~p~~~~~~~-~~~~v~~G~~v~l~C~~~~~~p~  137 (312)
T 2y23_A           62 FKDLGMDDLGIYSCDVTDTDGIAS--SYLIDEEELKRLLA-LSHEHKFPTVPVKSE-LAVEILEKGQVRFWMQAEKLSGN  137 (312)
T ss_dssp             ESSCCGGGCEEEEEEESSSCCCCE--EEEECHHHHHHHHH-HHHHHHSCBCCEEEE-EEEEECSSSCEEEEEEESCCCSS
T ss_pred             ECcCCccCCEEEEEEEEeCCCcEE--EEEEEEeeeeeeec-ccccCCCCccccccC-CceEEeeCCCEEEEEEEEeCCCC
Confidence            568999999999999999887322  34443320000000 000000444433221 256788999999999998 8999


Q ss_pred             CeEEEEeCCeeeEecccC--------------------------------C-----------------------------
Q psy16421         80 PSIMWRREGGEMITNSFN--------------------------------N-----------------------------   98 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~--------------------------------~-----------------------------   98 (151)
                      +.+.|++ ++..+....+                                .                             
T Consensus       138 ~~v~W~~-~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (312)
T 2y23_A          138 AKVNYIF-NEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQE  216 (312)
T ss_dssp             CEEEEEE-TTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEE-CCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccc
Confidence            9999999 5555443211                                0                             


Q ss_pred             ---CCCCeeeeCCceeEeecCCcEEEEeeecccCCC-eeEEEcCCceecc
Q psy16421         99 ---TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKS-VNYWTREKGDMIA  144 (151)
Q Consensus        99 ---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~k~~~~~~~  144 (151)
                         ..+|.|.... ...+.+|+++.|.|.+.|.|.| .+.|+|+|..+..
T Consensus       217 ~~~~~~p~~~~~~-~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~  265 (312)
T 2y23_A          217 WIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV  265 (312)
T ss_dssp             HHHHHSSEEEEEE-EEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEE
T ss_pred             hhhccCCceeecc-eEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCC
Confidence               0013332221 2578899999999999999998 8999999877654

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.72  E-value=2.2e-17  Score=115.78  Aligned_cols=129  Identities=19%  Similarity=0.312  Sum_probs=77.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCC--CCCceEeecCCeEEEEeee----
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYP--TSSDIMVREGSNVSMRCAA----   74 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~g~~~~l~C~~----   74 (151)
                      |.+++.+|+|.|+|.|.|..+ .....+.|.|..             ++......  .+....+.+|+.+.|.|.+    
T Consensus        83 i~~~~~~D~G~Y~C~a~n~~~-~~~~~~~l~V~~-------------~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~  148 (349)
T 4dep_C           83 FRPTLLNDTGNYTCMLRNTTY-CSKVAFPLEVVQ-------------KDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGY  148 (349)
T ss_dssp             ESSCCGGGCEEEEEEEECSSC-EEEEEEEEEEEC-------------CCTTSCCSCCCCEEEEETTCSEEEEECCSCTTS
T ss_pred             EccCChhhCEEEEEEEecCCc-eEEEEEEEEEec-------------CCcccCcccccCcceeeecCccEEEEcCCCccc
Confidence            568899999999999999877 444556666642             22111100  0124567789999999985    


Q ss_pred             -cCCCCCeEEEEeCCeeeEecccC-------------------------------------------CCC------CCee
Q psy16421         75 -SGSPPPSIMWRREGGEMITNSFN-------------------------------------------NTV------PPIV  104 (151)
Q Consensus        75 -~g~~~~~~~W~~~~~~~~~~~~~-------------------------------------------~~~------~p~~  104 (151)
                       .|.|.+.+.|++ +++.+.....                                           +..      +|.+
T Consensus       149 ~~g~p~~~v~W~k-~~~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i  227 (349)
T 4dep_C          149 FPSSVKPTITWYM-GCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVI  227 (349)
T ss_dssp             SCTTSCCEEEEEE-TTEECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEE
T ss_pred             ccCCCCceEEEee-CCEECCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeE
Confidence             778999999999 5665543111                                           001      4444


Q ss_pred             eeCCcee--EeecCCcEEEEeeec----ccCCCeeEEEcCCceecc
Q psy16421        105 KIPSQLI--GAHEGQQLVLECISE----AYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       105 ~~~~~~~--~~~~g~~~~l~C~~~----g~p~~~~~W~k~~~~~~~  144 (151)
                      .......  .+.+|+++.|.|.+.    |.|.|.+.|+++|..+..
T Consensus       228 ~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~  273 (349)
T 4dep_C          228 HSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDD  273 (349)
T ss_dssp             C----------------CCCEEEEECCCTTCCCEEEEESSCC----
T ss_pred             ecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccc
Confidence            4433222  678899999999998    678999999999876654

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.72  E-value=1.1e-17  Score=116.54  Aligned_cols=140  Identities=20%  Similarity=0.242  Sum_probs=64.8

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEecccccee---------EEeecCCCCeeEeCCC--CCceEeecCCeEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKL---------YIYTSSMPPDILDYPT--SSDIMVREGSNVS   69 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~---------~~~~~~~~p~~~~~~~--~~~~~~~~g~~~~   69 (151)
                      |.+++.+|+|.|+|.+.|. + ..+..+.|.|........         .......+|.+.....  .....+.+|+.+.
T Consensus        65 i~~v~~~D~G~Y~C~a~n~-~-~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~  142 (334)
T 1ry7_B           65 VLNASHEDSGAYSCRQRLT-Q-RVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVR  142 (334)
T ss_dssp             --------------------------------------------------------CCCCSCCTTCCCCEEEEETTCCEE
T ss_pred             EeecccccCEEEEEEEEeC-C-eEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEE
Confidence            5688999999999999998 5 455566666642110000         0000012344432211  1235778899999


Q ss_pred             EEeeecCCCCCeEEEEeCCeeeEecccC--------------------------------------------CC----CC
Q psy16421         70 MRCAASGSPPPSIMWRREGGEMITNSFN--------------------------------------------NT----VP  101 (151)
Q Consensus        70 l~C~~~g~~~~~~~W~~~~~~~~~~~~~--------------------------------------------~~----~~  101 (151)
                      |.|.+.|.|.+.+.|++ +++.+.....                                            +.    .+
T Consensus       143 l~C~~~g~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~  221 (334)
T 1ry7_B          143 FRCPAAGNPTPSISWLK-NGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHR  221 (334)
T ss_dssp             EECCCCCSSCCEEECCB-TTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSS
T ss_pred             EEEEccCCCCCeEEEEE-CCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCC
Confidence            99999999999999999 4554432110                                            00    12


Q ss_pred             Ceeee-CCceeEeecCCcEEEEeeecccCCCeeEEEc----CCceec
Q psy16421        102 PIVKI-PSQLIGAHEGQQLVLECISEAYPKSVNYWTR----EKGDMI  143 (151)
Q Consensus       102 p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k----~~~~~~  143 (151)
                      |.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|+|    ||..+.
T Consensus       222 p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~  268 (334)
T 1ry7_B          222 PILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG  268 (334)
T ss_dssp             CBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBC
T ss_pred             CceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCcccc
Confidence            33332 2356678899999999999999999999999    555443

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.71  E-value=2.1e-16  Score=118.87  Aligned_cols=127  Identities=22%  Similarity=0.379  Sum_probs=90.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.|.|..|...+..+.|.|..            .|+.+...+  ....+.+|+.+.|.|.+.|.|.+
T Consensus       346 i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~------------~p~~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~  411 (642)
T 1e07_A          346 LLSVTRNDVGPYECGIQNELSVDHSDPVILNVLY------------GPDDPTISP--SYTYYRPGVNLSLSCHAASNPPA  411 (642)
T ss_pred             EeccCcccCeeEEEEEeCCCCCcceeeEEEEEEc------------CCCCCeecC--CceEecCCCcEEEEEEcCccCCC
Confidence            4678899999999999999886555667776641            222222233  45677899999999999999999


Q ss_pred             eEEEEeCCeeeEecccC----------------------------------C---CCCCeeeeCCceeEeecCCcEEEEe
Q psy16421         81 SIMWRREGGEMITNSFN----------------------------------N---TVPPIVKIPSQLIGAHEGQQLVLEC  123 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~----------------------------------~---~~~p~~~~~~~~~~~~~g~~~~l~C  123 (151)
                      .+.|++ +++.+.....                                  +   ..+|.+.. .....+.+|+.+.|.|
T Consensus       412 ~i~W~~-~g~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~-~~~~~v~~g~~v~l~C  489 (642)
T 1e07_A          412 QYSWLI-DGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISS-NNSKPVEDKDAVAFTC  489 (642)
T ss_pred             eEEEEE-CCEEcCCCceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEec-CCceeecCCCeEEEEE
Confidence            999999 5655532211                                  0   01233322 3345678999999999


Q ss_pred             eecccCCCeeEEEcCCceecc
Q psy16421        124 ISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       124 ~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      .+.+ |.+.+.|+|+|..+..
T Consensus       490 ~~~~-~~~~i~W~~~g~~l~~  509 (642)
T 1e07_A          490 EPEA-QNTTYLWWVNGQSLPV  509 (642)
T ss_pred             ECCC-CCcEEEEEECCEeCCC
Confidence            9995 8889999999876644

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.71  E-value=6.1e-17  Score=114.81  Aligned_cols=135  Identities=19%  Similarity=0.268  Sum_probs=89.0

Q ss_pred             CccccccCC-eEEEEEEEcCCCCCCc---cceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC
Q psy16421          1 MTEVSREHM-GAYLCIASNGVPPSVS---KRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG   76 (151)
Q Consensus         1 i~~v~~~d~-G~Y~C~~~~~~~~~~~---~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g   76 (151)
                      |.+++.+|+ |.|+|.+.|..+....   ....|.|.....        ...|.+.... .....+.+|+.+.|.|.+.|
T Consensus       168 i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~--------~~~p~~~~~~-~~~~~v~~G~~v~l~C~~~g  238 (388)
T 2v5m_A          168 IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS--------SSAPRTPALV-QKPLELMVAHTISLLCPAQG  238 (388)
T ss_dssp             ESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCS--------CEEEECCSSC-CCCEEEETTSCEEECCCCEE
T ss_pred             EecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCc--------CCCCcCcccc-CCceEEeeCCcEEEEEECCC
Confidence            467899999 9999999998643221   112344431000        0011111111 13456788999999999999


Q ss_pred             CCCCeEEEEeCCee-----eEecccC---------------------------------------CCCCCeeeeCCceeE
Q psy16421         77 SPPPSIMWRREGGE-----MITNSFN---------------------------------------NTVPPIVKIPSQLIG  112 (151)
Q Consensus        77 ~~~~~~~W~~~~~~-----~~~~~~~---------------------------------------~~~~p~~~~~~~~~~  112 (151)
                      .|.+.+.|++++..     .+....+                                       +..+|.+...+....
T Consensus       239 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~  318 (388)
T 2v5m_A          239 FPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT  318 (388)
T ss_dssp             ESCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEE
T ss_pred             CCCCEEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEE
Confidence            99999999984211     1100000                                       234555666667778


Q ss_pred             eecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        113 AHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      +.+|+.+.|.|.+.|.|.|.+.|+|+|..+..
T Consensus       319 v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~  350 (388)
T 2v5m_A          319 VDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH  350 (388)
T ss_dssp             ECTTSCEEEEEEEEEECCCEEEEEETTEECSC
T ss_pred             ecCCCCEEEEEEeccccCCeEEEEECCEECcc
Confidence            89999999999999999999999999876643

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.71  E-value=2.9e-17  Score=112.34  Aligned_cols=127  Identities=14%  Similarity=0.228  Sum_probs=81.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCc---eEeecCCeEEEEeeecCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD---IMVREGSNVSMRCAASGS   77 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~~~~g~~~~l~C~~~g~   77 (151)
                      |.+++.+|+|.|+|.|.|..|........+.|..           ..+........ ..   +.+.+|+.+.|.|.+. .
T Consensus        55 i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v-----------~~p~~~~~~~~-~~~~~~~v~~G~~v~l~C~~~-~  121 (289)
T 3mjg_X           55 LTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFV-----------PDPTVGFLPND-AEELFIFLTEITEITIPCRVT-D  121 (289)
T ss_dssp             ECSCCGGGCEEEEEECCC------CCCEEEEEEC-----------CCTTCCBCCCC-HHHHEEEESSCCCEEECCCBS-C
T ss_pred             EccCChhhCEEEEEEEcccCCCCcCcEEeEEEEE-----------ECCCcCcccCC-CCcceEEeecCCeEEEEeEcC-C
Confidence            5688999999999999998874333444444431           11111111110 11   5678899999999998 6


Q ss_pred             CCCeEEEEeCC-eeeEecc-----------c-C---------------------CC--CCCeeeeCCceeEeecCCcEEE
Q psy16421         78 PPPSIMWRREG-GEMITNS-----------F-N---------------------NT--VPPIVKIPSQLIGAHEGQQLVL  121 (151)
Q Consensus        78 ~~~~~~W~~~~-~~~~~~~-----------~-~---------------------~~--~~p~~~~~~~~~~~~~g~~~~l  121 (151)
                      |.+.+.|++.+ +..+...           + +                     +.  .+|.+...+....+.+|+++.|
T Consensus       122 p~~~v~w~~~~~~~~~~~~~~~~~~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L  201 (289)
T 3mjg_X          122 PQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITL  201 (289)
T ss_dssp             TTSCEEEEESSCCSCCCCCEETTTEEEECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEE
T ss_pred             CCceEEEEeCCCCCccceeecCCcCeeeeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEE
Confidence            78889998743 3332210           0 0                     11  2555555555567899999999


Q ss_pred             EeeecccCCCeeEEEcCCc
Q psy16421        122 ECISEAYPKSVNYWTREKG  140 (151)
Q Consensus       122 ~C~~~g~p~~~~~W~k~~~  140 (151)
                      .|.+.|.|.|.+.|++++.
T Consensus       202 ~C~~~g~p~p~v~W~~~~~  220 (289)
T 3mjg_X          202 MCIVIGNEVVNFEWTYPRK  220 (289)
T ss_dssp             EEEEESCSSBEEEEECTTS
T ss_pred             EEEECCCCCcceEEEcCCc
Confidence            9999999999999998754

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.70  E-value=2e-16  Score=121.84  Aligned_cols=128  Identities=24%  Similarity=0.450  Sum_probs=94.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|..+ .....+.+.|.          ....+|.+...+  ....+.+|+.+.|.|.+.|.|.+
T Consensus       393 i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~v~----------~~~~~p~i~~~~--~~~~v~~G~~v~L~C~~~g~p~p  459 (816)
T 3dmk_A          393 IESVKKEDKGMYQCFVRNDRE-SAEASAELKLG----------GRFDPPVIRQAF--QEETMEPGPSVFLKCVAGGNPTP  459 (816)
T ss_dssp             ESSCCGGGCEEEEEEEECSSC-EEEECCEEECC----------CSSCCCEEEEEC--CCEEECSSSCEEEEEEEECSSCC
T ss_pred             EcCCCHHHCEEEEEEEECCCC-cEEEEEEEEEc----------cccCCCceEecC--cceEEcCCCCEEEEEEEecCCCC
Confidence            568899999999999999877 44444555442          113567776655  45778899999999999999999


Q ss_pred             eEEEEeCCeeeEecccC------------------------------------------------CCCCCeeeeCCceeE
Q psy16421         81 SIMWRREGGEMITNSFN------------------------------------------------NTVPPIVKIPSQLIG  112 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~------------------------------------------------~~~~p~~~~~~~~~~  112 (151)
                      .+.|++ ++..+.....                                                +..+|.+. ......
T Consensus       460 ~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~-~~~~~~  537 (816)
T 3dmk_A          460 EISWEL-DGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIR-QMEKKA  537 (816)
T ss_dssp             EEEEEE-TTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEEC-CCCCEE
T ss_pred             EEEEEE-CCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeE-ccCCeE
Confidence            999999 4554322110                                                22344333 334456


Q ss_pred             eecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421        113 AHEGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      +.+|+.+.|.|.+.|.|.+.+.|+|+|..+.
T Consensus       538 v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~  568 (816)
T 3dmk_A          538 IVAGETLIVTCPVAGYPIDSIVWERDNRALP  568 (816)
T ss_dssp             EETTCCEEEECCEECSSEEEEEEEETTEESC
T ss_pred             EecCCeEEEEEEecCCCCCEEEEEECCeEcc
Confidence            8899999999999999999999999977654

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.69  E-value=1.7e-16  Score=116.86  Aligned_cols=122  Identities=17%  Similarity=0.362  Sum_probs=91.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|  | . +..+.|.|             ..+|.+...+  ....+.+|+.+.|.|.+.+.+.+
T Consensus        84 I~~~~~~D~G~Y~C~a~n--g-~-~~~~~l~V-------------~~p~~~~~~~--~~~~v~~G~~v~l~C~~~~~~~~  144 (524)
T 2ec8_A           84 TEKAEATNTGKYTCTNKH--G-L-SNSIYVFV-------------RDPAKLFLVD--RSLYGKEDNDTLVRCPLTDPEVT  144 (524)
T ss_dssp             ESSCCSTTCEEEEEEETT--S-C-EEEEEEEC-------------CCSSCSBCCC--CCCCEETTSCEEECCCBSCCCCS
T ss_pred             EcccchhhCEEEEEeecC--C-c-ceEEEEEE-------------CCCCcccccc--cceEEEcCCeEEEECcCCCCccc
Confidence            568899999999999998  4 2 44455444             3445444333  56778899999999999987679


Q ss_pred             eEEEEeCCeeeEecccC------------------------------------------C----CCCCeeeeCCceeEee
Q psy16421         81 SIMWRREGGEMITNSFN------------------------------------------N----TVPPIVKIPSQLIGAH  114 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~------------------------------------------~----~~~p~~~~~~~~~~~~  114 (151)
                      .+.|++.+++.+....+                                          +    ..+|.|...+....+.
T Consensus       145 ~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~  224 (524)
T 2ec8_A          145 NYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLR  224 (524)
T ss_dssp             CEEEECSSSCCCCSSCEEEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEE
T ss_pred             eEEEEccCCcCcCCCCceeECCCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEE
Confidence            99999855555432110                                          1    2567777777777899


Q ss_pred             cCCcEEEEeeecccCCCe-eEEEcCCce
Q psy16421        115 EGQQLVLECISEAYPKSV-NYWTREKGD  141 (151)
Q Consensus       115 ~g~~~~l~C~~~g~p~~~-~~W~k~~~~  141 (151)
                      +|+++.|.|.+.|.|.|. +.|+|++..
T Consensus       225 ~G~~v~L~C~~~g~p~p~~i~W~~~~~~  252 (524)
T 2ec8_A          225 EGEEFTVTCTIKDVSSSVYSTWKRENSQ  252 (524)
T ss_dssp             TTSCEEEEEEEEESSTTCEEEEEETTCS
T ss_pred             cCCcEEEEEEEecCCCcEEEEEEeCCCC
Confidence            999999999999999887 999998776

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.69  E-value=3.2e-18  Score=118.22  Aligned_cols=38  Identities=18%  Similarity=0.412  Sum_probs=33.0

Q ss_pred             CceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      +....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+
T Consensus       229 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~  266 (317)
T 2y25_A          229 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASD  266 (317)
T ss_dssp             CSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCC
T ss_pred             CccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCC
Confidence            45678899999999999999999999999998777543

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.69  E-value=1.2e-15  Score=102.65  Aligned_cols=122  Identities=18%  Similarity=0.217  Sum_probs=85.8

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeee-cCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA-SGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~~~   79 (151)
                      |.+++.+|+|.|+|.+.|..+   +..+.|.|.             .++.... +  ....+.+|+.+.|.|.+ .+.|.
T Consensus        52 i~~~~~~d~G~Y~C~~~~~~~---s~~~~l~v~-------------~~~~~~~-~--~~~~~~~g~~v~l~C~~~~~~p~  112 (262)
T 3rjd_A           52 ITSASVNDSGEYRCQRGLSGR---SDPIQLEIH-------------RGWLLLQ-V--SSRVFTEGEPLALRCHAWKDKLV  112 (262)
T ss_dssp             ESSCCGGGCEEEEEEESSSCC---CCCEEEEEE-------------CSSEEEE-E--SCSEEETTSCEEEEEEEGGGCCC
T ss_pred             EecCCcccCeEEEEEEecCCc---cccEEEEEe-------------ccceEec-C--CCeEEecCCeEEEEEEccCCCCC
Confidence            568899999999999988654   345666654             3333332 2  34567889999999998 77888


Q ss_pred             CeEEEEeCCeeeEecccC-----------------------------------C---CCCCeeeeCCceeEeecCCcEEE
Q psy16421         80 PSIMWRREGGEMITNSFN-----------------------------------N---TVPPIVKIPSQLIGAHEGQQLVL  121 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~-----------------------------------~---~~~p~~~~~~~~~~~~~g~~~~l  121 (151)
                      +.+.|++ ++..+.....                                   +   ..+|.+...+ ...+.+|+.+.|
T Consensus       113 ~~v~W~~-~g~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l  190 (262)
T 3rjd_A          113 YNVLYYR-NGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTL  190 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESS-CSSEETTCCEEE
T ss_pred             ceEEEEE-CCccccccCCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecC-ceeecCCCeEEE
Confidence            9999999 5555543210                                   1   1244555444 456889999999


Q ss_pred             EeeecccCC-Ce----eEEEcCCceec
Q psy16421        122 ECISEAYPK-SV----NYWTREKGDMI  143 (151)
Q Consensus       122 ~C~~~g~p~-~~----~~W~k~~~~~~  143 (151)
                      .|.+.+.|. |.    +.|++++..+.
T Consensus       191 ~C~~~~~p~~p~~~~~~~w~~~~~~~~  217 (262)
T 3rjd_A          191 SCETKLLLQRPGLQLYFSFYMGSKTLR  217 (262)
T ss_dssp             EEECCCCCC-----EEEEEEETTEEEE
T ss_pred             EeEcccCCCCCCccEEEEEEeCCcEec
Confidence            999999876 43    78999877654

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.68  E-value=1.1e-17  Score=116.81  Aligned_cols=127  Identities=18%  Similarity=0.313  Sum_probs=90.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEee-----ec
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCA-----AS   75 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~-----~~   75 (151)
                      |.+++.+|+|.|+|.+.|..+ .....+.|.|.             .++............+.+|+.+.|.|.     +.
T Consensus        85 i~~v~~~D~G~Y~C~~~n~~g-~~~~~~~l~V~-------------~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~  150 (339)
T 3o4o_C           85 LLPALQEDSGTYVCTTRNASY-CDKMSIELRVF-------------ENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTR  150 (339)
T ss_dssp             ESSBCTTCCEEEECCEEETTE-EEEEEEEEEEE-------------CSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCC
T ss_pred             ECCCCcccCEEEEEEEECCcc-eEEEEEEEEEE-------------cCCCccccccccceEEECCCCEEEEecCCccccc
Confidence            568899999999999999877 45556666664             222111000002346778999999999     78


Q ss_pred             CCCCCeEEEEeCCeeeEecccC----------------------------------------------C-----CCCCee
Q psy16421         76 GSPPPSIMWRREGGEMITNSFN----------------------------------------------N-----TVPPIV  104 (151)
Q Consensus        76 g~~~~~~~W~~~~~~~~~~~~~----------------------------------------------~-----~~~p~~  104 (151)
                      +.|.+.+.|++ ++..+.....                                              +     ..+|.+
T Consensus       151 g~p~~~v~W~k-~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i  229 (339)
T 3o4o_C          151 DKTDVKIQWYK-DSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVI  229 (339)
T ss_dssp             SSSCCCBCCEE-SSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEE
T ss_pred             CCCCceEEEec-CCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEE
Confidence            89999999999 5555443210                                              0     124555


Q ss_pred             eeCCceeEeecCCcEEEEeee---cccC-CCeeEEEcCCcee
Q psy16421        105 KIPSQLIGAHEGQQLVLECIS---EAYP-KSVNYWTREKGDM  142 (151)
Q Consensus       105 ~~~~~~~~~~~g~~~~l~C~~---~g~p-~~~~~W~k~~~~~  142 (151)
                      ...+....+.+|+++.|.|.+   .|.| .+.+.|+++|..+
T Consensus       230 ~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~  271 (339)
T 3o4o_C          230 ISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHI  271 (339)
T ss_dssp             CCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCS
T ss_pred             ecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeec
Confidence            555666678899999999999   8999 8889999987654

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.68  E-value=5e-17  Score=111.13  Aligned_cols=125  Identities=15%  Similarity=0.244  Sum_probs=87.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCe-eEeCCCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPD-ILDYPTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++.+|+|.|+|.+.|..+ ..+..+.|.|.             .+|. +...+  ....+.+|+.+.|.|.+.+ +.
T Consensus        55 i~~~~~~d~G~Y~C~~~n~~~-~~~~~~~l~V~-------------~~~~~~~~~~--~~~~v~~g~~v~l~C~~~~-~~  117 (292)
T 4dkd_C           55 TNNATFQNTGTYRCTEPGDPL-GGSAAIHLYVK-------------DPARPWNVLA--QEVVVFEDQDALLPCLLTD-PV  117 (292)
T ss_dssp             ESSCCGGGCSCEEECCCC-----CCEEECCEEC-------------CSSCCEEESC--SEEEEETTSCEECCEEESS-GG
T ss_pred             EcccccccCEEEEEEEccCCC-CcceEEEEEEc-------------CccccccccC--CeEEEcCCCcEEEeeeCCC-CC
Confidence            568899999999999999877 34555565553             3443 33333  4678889999999999987 54


Q ss_pred             --CeEEEEeCCeeeEecccC-----------------------------------------CC----CCCeeeeCCceeE
Q psy16421         80 --PSIMWRREGGEMITNSFN-----------------------------------------NT----VPPIVKIPSQLIG  112 (151)
Q Consensus        80 --~~~~W~~~~~~~~~~~~~-----------------------------------------~~----~~p~~~~~~~~~~  112 (151)
                        +.+.|+++++..+.....                                         +.    .+|.+...+....
T Consensus       118 ~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~  197 (292)
T 4dkd_C          118 LEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELV  197 (292)
T ss_dssp             GGSSEEEEEGGGCCCCSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBC
T ss_pred             cceeEEEEecCCCccccCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCcee
Confidence              789999965554432211                                         11    2677776666666


Q ss_pred             eecCCcEEEEeeecccCC-CeeEEEcCCcee
Q psy16421        113 AHEGQQLVLECISEAYPK-SVNYWTREKGDM  142 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g~p~-~~~~W~k~~~~~  142 (151)
                      +.+|+.+.|.|.+.+.|+ +.+.|++++..+
T Consensus       198 ~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~  228 (292)
T 4dkd_C          198 RIRGEAAQIVCSASSVDVNFDVFLQHNNTKL  228 (292)
T ss_dssp             CCSSSCEEEEEEEEESSSCCEEECCBSSCCC
T ss_pred             EecCCCEEEEEEecCCCCceEEEEeCCCccc
Confidence            789999999999998776 458999987644

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.67  E-value=5.6e-16  Score=114.04  Aligned_cols=125  Identities=14%  Similarity=0.169  Sum_probs=78.6

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCee-EeCCCCCce-EeecCCeEEEEeeecCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDI-LDYPTSSDI-MVREGSNVSMRCAASGSP   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~-~~~~~~~~~-~~~~g~~~~l~C~~~g~~   78 (151)
                      |.+++.+| |.|+|.|.|..|. ......|.+             ...|.+ ...+  ... .+.+|+.+.|.|.+.|.+
T Consensus       285 i~~~~~~d-G~Y~C~a~n~~g~-~~~~~~l~v-------------~~~P~~~~~~p--~~~~~v~~g~~~~l~C~~~g~~  347 (523)
T 2rcj_C          285 VPSSSLGT-QTYICNVNHKPSN-TKVDKRVEP-------------LSLPSVFLFPP--KPKDTLMISRTPEVTCVVVDVS  347 (523)
T ss_pred             echhhcCC-ceEEEEEEeCCCC-cceEEecCC-------------CcCceEEecCC--CchhhcccCCceEEEEEEeccc
Confidence            45678889 9999999999884 333333332             233443 3333  222 367899999999998865


Q ss_pred             C----CeEEEEeCCeeeEeccc----------------------------C------------------------CCCCC
Q psy16421         79 P----PSIMWRREGGEMITNSF----------------------------N------------------------NTVPP  102 (151)
Q Consensus        79 ~----~~~~W~~~~~~~~~~~~----------------------------~------------------------~~~~p  102 (151)
                      +    +.+.|++ +++.+....                            +                        ...+|
T Consensus       348 p~~~~~~v~W~k-~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P  426 (523)
T 2rcj_C          348 HEDPQVKFNWYV-DGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREP  426 (523)
T ss_pred             CCCCceEEEEEE-CCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEcccCCCCCC
Confidence            3    5899999 555442110                            0                        01234


Q ss_pred             eeeeCCceeEeecCCcEEEEeeecccCCC--eeEEEcCCceec
Q psy16421        103 IVKIPSQLIGAHEGQQLVLECISEAYPKS--VNYWTREKGDMI  143 (151)
Q Consensus       103 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~k~~~~~~  143 (151)
                      .+...+.......|..+.|.|.+.|.|+|  .+.|+|||..+.
T Consensus       427 ~v~~~~~~~~~~~~~~~~l~C~~~g~~p~~~~v~W~k~g~~~~  469 (523)
T 2rcj_C          427 QVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPEN  469 (523)
T ss_pred             EEEEeCCChHHccCCceEEEEEEEeeECCCCEEEEEECCEECC
Confidence            43332222112335559999999997766  799999987664

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.67  E-value=6.2e-16  Score=111.31  Aligned_cols=125  Identities=18%  Similarity=0.348  Sum_probs=84.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~~   79 (151)
                      |.+++.+|+|.|+|.|.|..+......+.|.|.          ....+|.+...+  ......+|+.+.|.|.+.+ .|.
T Consensus        79 I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~----------~~~~~P~v~~~~--~~~~~~~g~~~~l~C~~~g~~p~  146 (438)
T 1qgc_4           79 IDPVEADDVATYYCQQSNEVPLTFGAGTKLDLK----------RADAAPTVSIFP--PSSEQLTSGGASVVCFLNNFYPK  146 (438)
T ss_dssp             ESSCCGGGCEEEEEEECSSTTCCBCCCEEEEEC----------CCCBCCEEEEEC--CCHHHHHTTEEEEEEEEEEEBSS
T ss_pred             eCCCcCcCCeeEEEEEecCCCccccCceeEEec----------CCCCCCEEEecC--CChhhccCCceEEEEEEccccCC
Confidence            578999999999999999876434455666663          112356665433  1223346889999999877 677


Q ss_pred             C-eEEEEeCCeeeEecc----------c-C---------------------------C------------CCCCeeeeCC
Q psy16421         80 P-SIMWRREGGEMITNS----------F-N---------------------------N------------TVPPIVKIPS  108 (151)
Q Consensus        80 ~-~~~W~~~~~~~~~~~----------~-~---------------------------~------------~~~p~~~~~~  108 (151)
                      + .+.|++ +++.+...          . .                           .            ..++.....+
T Consensus       147 ~~~v~W~k-~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~  225 (438)
T 1qgc_4          147 DINVKWKI-DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEVMLVES  225 (438)
T ss_dssp             CEEEEEEE-TTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC-CCEEEEE
T ss_pred             CcEEEEEE-CCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccccceeEEecC
Confidence            7 899999 56554332          0 0                           0            0011122223


Q ss_pred             ceeEeecCCcEEEEeeecccC--CCeeEEEcC
Q psy16421        109 QLIGAHEGQQLVLECISEAYP--KSVNYWTRE  138 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g~p--~~~~~W~k~  138 (151)
                      ....+.+|+++.|.|.+.|.|  .+.+.|+|+
T Consensus       226 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~  257 (438)
T 1qgc_4          226 GGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQ  257 (438)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CceEEecCCcEEEEEEEcccccCCcEEEEEEC
Confidence            456688999999999999988  678999986

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.65  E-value=1.3e-16  Score=113.22  Aligned_cols=127  Identities=17%  Similarity=0.264  Sum_probs=86.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeee-cCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA-SGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~~~   79 (151)
                      |.+++.+|+|.|+|.+.|..|...+..+.|.|..           ...|.+..    ....+.+|+.+.|.|.+ .+.|.
T Consensus        66 i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~-----------~~~p~~~~----~~~~~~~G~~v~l~C~~~~~~p~  130 (395)
T 1bih_A           66 FLRPQASDEGHYQCFAETPAGVASSRVISFRKTY-----------LIASPAKT----HEKTPIEGRPFQLDCVLPNAYPK  130 (395)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEE-----------EECCCCEE----EEECCBTTEEEEECCCCCEEESC
T ss_pred             EecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEE-----------eecCCcCC----cceeeeeCCcEEEEecCCCCCCC
Confidence            5678999999999999998875444556665531           11232221    34567789999999995 78899


Q ss_pred             CeEEEEeCC--eeeE----------e-ccc-----------------C------CC------------------------
Q psy16421         80 PSIMWRREG--GEMI----------T-NSF-----------------N------NT------------------------   99 (151)
Q Consensus        80 ~~~~W~~~~--~~~~----------~-~~~-----------------~------~~------------------------   99 (151)
                      +.+.|++++  ..+.          . ...                 .      +.                        
T Consensus       131 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~  210 (395)
T 1bih_A          131 PLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYK  210 (395)
T ss_dssp             CEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCC
T ss_pred             CeEEEEecCCCcCcccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEeccccccccccc
Confidence            999999943  0110          0 000                 0      00                        


Q ss_pred             --CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        100 --VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       100 --~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                        .+|.+  .+....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..
T Consensus       211 ~~~~p~~--~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~  255 (395)
T 1bih_A          211 GEPVPQY--VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNG  255 (395)
T ss_dssp             CCCEEEE--ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCC
T ss_pred             CCcCcee--cCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCC
Confidence              01111  13456788999999999999999999999999876654

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.65  E-value=3.7e-15  Score=103.27  Aligned_cols=126  Identities=22%  Similarity=0.362  Sum_probs=82.9

Q ss_pred             CccccccCCeEEEEEEEcCCCC----CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP----SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g   76 (151)
                      |.+++.+|+|.|+|.|.|..+.    ..+..+.|.|.          ....+|.+...+  . ..+.+|+++.|.|.+.+
T Consensus        78 I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~----------~~~~~p~~~~~~--~-~~v~~G~~v~L~C~~~~  144 (316)
T 3vh8_G           78 MSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVT----------GNHRKPSLLAHP--G-PLVKSGERVILQCWSDI  144 (316)
T ss_dssp             ECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEE----------CSSCCCEEEEES--C-SEEETTCCEEEEEEESS
T ss_pred             ECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEe----------cCCCCCeEEecC--C-CccCCCCeEEEEEcCCC
Confidence            5689999999999999874321    34455666663          112456666554  2 34789999999999965


Q ss_pred             CCCCeEEEEeCCeeeEecc----------cC---------------------C---------------------CCCCee
Q psy16421         77 SPPPSIMWRREGGEMITNS----------FN---------------------N---------------------TVPPIV  104 (151)
Q Consensus        77 ~~~~~~~W~~~~~~~~~~~----------~~---------------------~---------------------~~~p~~  104 (151)
                       +.+.+.|++++ ..+...          ..                     +                     ..+|.+
T Consensus       145 -~~~~~~w~k~g-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i  222 (316)
T 3vh8_G          145 -MFEHFFLHKEG-ISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSL  222 (316)
T ss_dssp             -CCSEEEEEETT-CCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEE
T ss_pred             -CCcEEEEEECC-CccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeE
Confidence             56789999944 332100          00                     0                     112333


Q ss_pred             eeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421        105 KIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       105 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      ...+. ..+.+|+++.|.|.+.+ |.+.+.|+|+|..+.
T Consensus       223 ~~~~~-~~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~~  259 (316)
T 3vh8_G          223 SAQPG-PKVQAGESVTLSCSSRS-SYDMYHLSREGGAHE  259 (316)
T ss_dssp             EEESC-SCCCTTSCCEEEEEESS-CCSEEEEEETTSSCC
T ss_pred             EeCCC-CeecCCCcEEEEEECCC-CCcEEEEEECCCcCC
Confidence            33322 24678999999999974 778999999986543

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.64  E-value=3.8e-15  Score=110.81  Aligned_cols=128  Identities=22%  Similarity=0.329  Sum_probs=89.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCc----cceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVS----KRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~----~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g   76 (151)
                      |.+++.+|+|.|+|.|.|..+ ...    ..+.|.|.             .+|.+...+  ....+.+|+.+.|.|.+.+
T Consensus       294 i~~v~~~d~G~Y~C~a~n~g~-~~~~~~~~~~~l~V~-------------~~p~~~~~~--~~~~~~~G~~v~l~C~~~~  357 (585)
T 2ocw_A          294 ITGLRKEDAGRYLCGAHSDGQ-LQEGSPIQAWQLFVN-------------EESTIPRSP--TVVKGVAGSSVAVLCPYNR  357 (585)
T ss_pred             EccCChhhCEEEEEEEEcCCC-ccccCceeeEEEEEe-------------cccccccCC--cceEEEeCCcEEEEEecCC
Confidence            467889999999999999633 321    44555553             566665554  5678889999999999999


Q ss_pred             CCCCeE----EEEe--CCe--eeE---------------------------ecccC------------------------
Q psy16421         77 SPPPSI----MWRR--EGG--EMI---------------------------TNSFN------------------------   97 (151)
Q Consensus        77 ~~~~~~----~W~~--~~~--~~~---------------------------~~~~~------------------------   97 (151)
                      .|.+.+    .|++  ++.  ...                           ....-                        
T Consensus       358 ~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~an~~g~~~~~~~l  437 (585)
T 2ocw_A          358 KESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEI  437 (585)
T ss_pred             CCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcccCCCccceeEEE
Confidence            998877    7988  432  111                           00000                        


Q ss_pred             -C-CCCCeeeeCCceeEeecCCcEEEEeeec----ccCCCeeEEEcCCceeccC
Q psy16421         98 -N-TVPPIVKIPSQLIGAHEGQQLVLECISE----AYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus        98 -~-~~~p~~~~~~~~~~~~~g~~~~l~C~~~----g~p~~~~~W~k~~~~~~~~  145 (151)
                       + ..+|.+.. +....+.+|+.+.|.|.+.    |.|.|.+.|+|+|..+...
T Consensus       438 ~V~~~~p~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~  490 (585)
T 2ocw_A          438 KIIEGEPNLKV-PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPS  490 (585)
T ss_pred             EEecCcccccc-CCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeec
Confidence             1 11233332 4566789999999999997    7788899999998776543

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.64  E-value=4.2e-15  Score=107.44  Aligned_cols=124  Identities=17%  Similarity=0.266  Sum_probs=85.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeE-eCCCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDIL-DYPTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++. |+| |+|.+.+..+ ..+..+.|.|.             .+|.+. ..+  ....+.+|+.+.|.|.+.+.++
T Consensus        54 i~~v~~-d~g-Y~C~a~~~~~-~~~~~~~l~V~-------------~~P~~~~~~~--~~~~v~~G~~v~L~C~~~g~~~  115 (450)
T 1z7z_I           54 LSNVQE-DSQ-PMCYSNCPDG-QSTAKTFLTVY-------------WTPERVELAP--LPSWQPVGKNLTLRCQVEGGAP  115 (450)
T ss_dssp             EEEECS-CBC-CEEEEEETTE-EEEEECEEEEE-------------BCCSEEEECC--CCSEECTTSEEEEEEEEECCBC
T ss_pred             EEeccc-CCe-eEEEEeCCCC-cceeEEEEEEE-------------eCCCcceecC--CCceEeeCCeEEEEEEecCCCC
Confidence            456766 999 9999976544 45556666664             345444 444  4567889999999999999888


Q ss_pred             C---eEEEEeCCeeeEecccC---------------------------CC-------------CCCeeee------CCce
Q psy16421         80 P---SIMWRREGGEMITNSFN---------------------------NT-------------VPPIVKI------PSQL  110 (151)
Q Consensus        80 ~---~~~W~~~~~~~~~~~~~---------------------------~~-------------~~p~~~~------~~~~  110 (151)
                      +   .+.|++ +++.+.....                           +.             .+..+.+      .+..
T Consensus       116 ~~~~~v~W~k-~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~  194 (450)
T 1z7z_I          116 RANLTVVLLR-GEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQL  194 (450)
T ss_dssp             GGGEEEEEEE-TTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEE
T ss_pred             CcCcEEEEee-CCEEeecccccccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEe
Confidence            7   899999 5665543210                           00             1111111      1222


Q ss_pred             ---eEeecCCcEEEEeeeccc-C--CCeeEEEcCCceec
Q psy16421        111 ---IGAHEGQQLVLECISEAY-P--KSVNYWTREKGDMI  143 (151)
Q Consensus       111 ---~~~~~g~~~~l~C~~~g~-p--~~~~~W~k~~~~~~  143 (151)
                         ..+.+|+.+.|.|.+.|. |  .+.++|+++|..+.
T Consensus       195 ~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~  233 (450)
T 1z7z_I          195 VSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN  233 (450)
T ss_dssp             ECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECC
T ss_pred             cCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCC
Confidence               568899999999999998 7  68899999976553

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.64  E-value=9.6e-16  Score=109.03  Aligned_cols=123  Identities=23%  Similarity=0.364  Sum_probs=81.7

Q ss_pred             cccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeec-CCCCCeEE
Q psy16421          5 SREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAAS-GSPPPSIM   83 (151)
Q Consensus         5 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-g~~~~~~~   83 (151)
                      +.+|+|.|+|.|.|..|...+..+.+.+..             .+.+.... .....+.+|+.+.|.|.+. +.+.+.+.
T Consensus        71 ~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~-------------~~~~~~~~-~~~~~v~~G~~~~l~C~~~~~~~~~~~~  136 (384)
T 3kld_A           71 KTQDAGTYQCIATNSFGTIVSREAKLQFAY-------------LENFKTRT-RSTVSVRRGQGMVLLCGPPPHSGELSYA  136 (384)
T ss_dssp             HHHHCEEEEEEEEETTEEEECCCEEEEEEE-------------ECCCSCCC-CCCEEEEETCCEEECCCCCSEESCEEEE
T ss_pred             CcccCEEEEEEEEcCcccEEecceEEEEec-------------ccccccCC-CCceeEEcCCCeEEecCCCCCCCCeEEE
Confidence            678999999999999885555566666531             11121111 1456788999999999754 45678999


Q ss_pred             EEeCCeeeEecccC----------------------------C-------CC----------------CCeeee-CCcee
Q psy16421         84 WRREGGEMITNSFN----------------------------N-------TV----------------PPIVKI-PSQLI  111 (151)
Q Consensus        84 W~~~~~~~~~~~~~----------------------------~-------~~----------------~p~~~~-~~~~~  111 (151)
                      |++ ++.++....+                            +       ..                +|.+.. .+...
T Consensus       137 W~~-~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~  215 (384)
T 3kld_A          137 WIF-NEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETV  215 (384)
T ss_dssp             EEE-TTEECCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEE
T ss_pred             EEE-CCCCCEeeccEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCce
Confidence            998 4443321110                            0       00                111211 24456


Q ss_pred             EeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421        112 GAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       112 ~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      .+.+|+++.|.|.+.|.|.|.+.|+|+++..
T Consensus       216 ~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~  246 (384)
T 3kld_A          216 PAEKGTTVKLECFALGNPVPTILWRRADGKP  246 (384)
T ss_dssp             EEETTSCEEEEEEEEEESCCEEEEEETTCCC
T ss_pred             EecCCCcEEEEEEEeecCCCcEEEEeCCCcc
Confidence            6789999999999999999999999965533

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.64  E-value=7.9e-16  Score=108.55  Aligned_cols=120  Identities=16%  Similarity=0.286  Sum_probs=81.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|..     ..+.|.|..                +...+   ...+.+|+++.|.|.+.+.|.+
T Consensus        71 I~~v~~~D~G~Y~C~~~n~~-----~~~~l~V~~----------------~~~~~---~~~v~~G~~v~l~C~~~~~p~~  126 (363)
T 1wio_A           71 IKNLKIEDSDTYICEVEDQK-----EEVQLLVFG----------------LTANS---DTHLLQGQSLTLTLESPPGSSP  126 (363)
T ss_dssp             ECSCCGGGCEEEEEEETTEE-----EEEEEEEEE----------------EEESS---CSSEESBSCEEEEEECCTTCCC
T ss_pred             ECCCCHHHCEEEEEEEEECC-----CcEEEEEEe----------------CCCCC---ceEEecCCCEEEEEEcCCCCCC
Confidence            56889999999999998863     245555531                11222   2356789999999999889999


Q ss_pred             eEEEEeCCeeeEecccC--------------------C----CCCCeeee-----CCceeEeecCCcEEEEeeecc----
Q psy16421         81 SIMWRREGGEMITNSFN--------------------N----TVPPIVKI-----PSQLIGAHEGQQLVLECISEA----  127 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~--------------------~----~~~p~~~~-----~~~~~~~~~g~~~~l~C~~~g----  127 (151)
                      .+.|+++++........                    .    .....+.+     .+....+.+|+.+.|.|.+.|    
T Consensus       127 ~v~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~~~~~~~~G~~v~l~C~~~~~~~~  206 (363)
T 1wio_A          127 SVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEK  206 (363)
T ss_dssp             CEEEECSSSCEEEESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSEEEEEEETBCCEEEECCCCCCCCS
T ss_pred             eEEEEcCCCcccccceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCCCceEEecCCEEEEEEEEeccccc
Confidence            99999954433221110                    0    00001100     124556788999999999888    


Q ss_pred             -cCCCeeEEEcCCceecc
Q psy16421        128 -YPKSVNYWTREKGDMIA  144 (151)
Q Consensus       128 -~p~~~~~W~k~~~~~~~  144 (151)
                       .|.|.+.|+|+|..+..
T Consensus       207 ~~P~p~i~W~~~g~~~~~  224 (363)
T 1wio_A          207 LTGSGELWWQAERASSSK  224 (363)
T ss_dssp             SCEEEEEEEEESSCCCCC
T ss_pred             CCCceeEEEecCCCCccc
Confidence             88899999998766543

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.63  E-value=8.6e-16  Score=108.77  Aligned_cols=126  Identities=21%  Similarity=0.293  Sum_probs=86.0

Q ss_pred             ccccc-cCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeee-cCCCC
Q psy16421          2 TEVSR-EHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA-SGSPP   79 (151)
Q Consensus         2 ~~v~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~~~   79 (151)
                      .++.. +|+|.|+|.+.|..|...+..+.|.|.             ..|.+.... .....+.+|+.+.|.|.+ .+.|.
T Consensus        66 ~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~-------------~~~~~~~~~-~~~~~v~~G~~v~l~C~~~~~~p~  131 (382)
T 1cs6_A           66 SNPVKAKDAGSYQCVATNARGTVVSREASLRFG-------------FLQEFSAEE-RDPVKITEGWGVMFTCSPPPHYPA  131 (382)
T ss_dssp             ESCCHHHHCEEEEEEEEETTEEEECCCEEEEEE-------------EECCCCSSC-CCCEEEETTSCEEECCCCCSEESC
T ss_pred             ecccccccCEEEEEEEEcCCcEEEecceEEEee-------------ccccccccC-CCceEEecCCcEEEEeCCCCCCCC
Confidence            45665 999999999999887544555666664             112222111 145788899999999995 55788


Q ss_pred             CeEEEEeCCeeeEec---------cc-C----------------------C----------------------CCCCeee
Q psy16421         80 PSIMWRREGGEMITN---------SF-N----------------------N----------------------TVPPIVK  105 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~---------~~-~----------------------~----------------------~~~p~~~  105 (151)
                      +.+.|+++ +..+..         .. .                      .                      ..+|.+.
T Consensus       132 ~~i~W~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~  210 (382)
T 1cs6_A          132 LSYRWLLN-EFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIK  210 (382)
T ss_dssp             CEEEEEES-STTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEE
T ss_pred             cEEEEEEC-CCccccccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCcee
Confidence            99999994 333210         00 0                      0                      0023333


Q ss_pred             eC-CceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421        106 IP-SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       106 ~~-~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      .. +....+.+|+.+.|.|.+.|.|.|.+.|+|+++.+
T Consensus       211 ~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~  248 (382)
T 1cs6_A          211 AKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ  248 (382)
T ss_dssp             ECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCC
T ss_pred             ccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCccc
Confidence            32 44667889999999999999999999999987654

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.62  E-value=1.3e-15  Score=110.14  Aligned_cols=122  Identities=16%  Similarity=0.140  Sum_probs=77.9

Q ss_pred             cccccCCe--EEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          3 EVSREHMG--AYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         3 ~v~~~d~G--~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      +++.+|+|  .|+|.+.|..+ .....+.|.|..           ..+|.+...    ...+.+|+.+.|.|.+.  |.|
T Consensus       250 ~v~~~d~G~~~Y~C~a~n~~g-~~~~~~~l~V~~-----------~~~p~i~~~----~~~v~~G~~v~l~C~~~--p~p  311 (450)
T 1z7z_I          250 SVTAEDEGTQRLTCAVILGNQ-SQETLQTVTIYS-----------FPAPNVILT----KPEVSEGTEVTVKCEAH--PRA  311 (450)
T ss_dssp             ECCGGGCEEEEEEEEEEETTE-EEEEEEEEEEEC-----------CCCCEEEES----CSEEETTCEEEEEEEC------
T ss_pred             EeEhhhCCcEEEEEEEccCCc-cEEEEEEEEEec-----------CCCCeEecC----CeeEeCCCcEEEEEecC--CCC
Confidence            46889999  99999999987 445566666541           234666543    35788999999999997  888


Q ss_pred             eEEEEeCCeeeEecc-cC--------------------------------------CCCCCeeeeCC--ceeEeecCCcE
Q psy16421         81 SIMWRREGGEMITNS-FN--------------------------------------NTVPPIVKIPS--QLIGAHEGQQL  119 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~-~~--------------------------------------~~~~p~~~~~~--~~~~~~~g~~~  119 (151)
                      .+.|   ++..+... ..                                      +..+|.+....  ....+.+|+++
T Consensus       312 ~i~W---~g~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~  388 (450)
T 1z7z_I          312 KVTL---NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQ  388 (450)
T ss_dssp             ---------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCEE
T ss_pred             EeEE---CCEEcCCCCceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCeE
Confidence            9999   34444111 00                                      11233443332  56678999999


Q ss_pred             EEEeeecccCCCeeEEEcCCceeccC
Q psy16421        120 VLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       120 ~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      .|.|.+.|.|.|.+.|+|+|..++.+
T Consensus       389 ~l~C~~~g~P~p~i~W~~~g~~~~~~  414 (450)
T 1z7z_I          389 TPMCQAWGNPLPELKCLKDGTFPLPI  414 (450)
T ss_dssp             CCCCCCEEESCCEEEEEETTTEECCT
T ss_pred             EEEEecccCCCCcEEEEECCcccCCC
Confidence            99999999999999999998765544

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.62  E-value=6.3e-16  Score=108.50  Aligned_cols=76  Identities=14%  Similarity=0.385  Sum_probs=51.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC-CC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS-PP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-~~   79 (151)
                      |.+++.+|+|.|.|.+.|..+ .......|.|..         ....+|.+...+  ....+.+|+.+.|.|.+.|. |.
T Consensus        83 I~~v~~~D~G~Y~C~~~n~~~-~~~~~~~l~V~~---------~~~~~P~i~~~~--~~~~~~~g~~v~L~C~~~g~~P~  150 (344)
T 1za6_B           83 LSSLRSEDTAVYFCTRSLNMA-YWGQGTLVTVSS---------ASTKGPSVFPLA--PSSKSTSGGTAALGCLVKDYFPE  150 (344)
T ss_dssp             ECSCCGGGCEEEEEEETTTTC-EECCCEEEEECS---------SCCBCCEEEEEC--CSCTTTSSSEEEEEEEEEEEBSS
T ss_pred             ECCCCcccCEEEEEEEecCcc-eecCcEEEEEec---------CCCCCCeEEEcc--ccccccCCCcEEEEEEEeeEECC
Confidence            578999999999999998543 333455666641         111345444322  12235689999999999886 54


Q ss_pred             -CeEEEEeCC
Q psy16421         80 -PSIMWRREG   88 (151)
Q Consensus        80 -~~~~W~~~~   88 (151)
                       +.+.|++++
T Consensus       151 ~~~v~W~k~g  160 (344)
T 1za6_B          151 PVTVSWNSGA  160 (344)
T ss_dssp             CCCEEETTTT
T ss_pred             CeEEEEecCC
Confidence             799999843

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.62  E-value=1.4e-15  Score=102.97  Aligned_cols=120  Identities=17%  Similarity=0.151  Sum_probs=82.6

Q ss_pred             ccccCCe--EEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCe
Q psy16421          4 VSREHMG--AYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPS   81 (151)
Q Consensus         4 v~~~d~G--~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~   81 (151)
                      ++.+|+|  .|+|.+.|..+ .....+.|.|..           ..+|.+..    ....+.+|+.+.|.|.+.  |.+.
T Consensus        66 ~~~~d~g~g~Y~C~a~n~~~-~~~~~~~l~V~~-----------~p~p~~~~----~~~~v~~G~~v~l~C~~~--p~~~  127 (265)
T 2oz4_A           66 VTAEDEGTQRLTCAVILGNQ-SQETLQTVTIYS-----------FPAPNVIL----TKPEVSEGTEVTVKCEAH--PRAK  127 (265)
T ss_dssp             ECGGGCEEEEEEEEEEETTE-EEEEEEEEEEEC-----------CCCCEEEE----SCSEEETTCEEEEEEECC--TTSE
T ss_pred             cccccCCcceEEEEEecCCC-CcEEEEEEEEeC-----------CCCceeec----CCceecCCCcEEEEEEcc--CCCE
Confidence            3668888  49999999987 455566666531           12345543    345688899999999998  8899


Q ss_pred             EEEEeCCeeeEecccC---------------------------------------CCCCCeeeeC--CceeEeecCCcEE
Q psy16421         82 IMWRREGGEMITNSFN---------------------------------------NTVPPIVKIP--SQLIGAHEGQQLV  120 (151)
Q Consensus        82 ~~W~~~~~~~~~~~~~---------------------------------------~~~~p~~~~~--~~~~~~~~g~~~~  120 (151)
                      +.|   +++.+.....                                       +..+|.+...  +....+.+|+.+.
T Consensus       128 i~W---~g~~~~~~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~  204 (265)
T 2oz4_A          128 VTL---NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQT  204 (265)
T ss_dssp             EEE---SSCSSSCCSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEEC
T ss_pred             EEE---CCEEccCCCCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEE
Confidence            999   3444321100                                       1112222222  3456788999999


Q ss_pred             EEeeecccCCCeeEEEcCCceecc
Q psy16421        121 LECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       121 l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      |.|.+.|.|.|.+.|+|+|..++.
T Consensus       205 l~C~~~g~P~p~i~W~~~~~~~~~  228 (265)
T 2oz4_A          205 PMCQAWGNPLPELKCLKDGTFPLP  228 (265)
T ss_dssp             CCCCCEEESCCEEEEEETTTEECC
T ss_pred             EEeECccCCCCeEEEEECCcccCC
Confidence            999999999999999999874443

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.61  E-value=4.7e-17  Score=124.32  Aligned_cols=122  Identities=22%  Similarity=0.369  Sum_probs=0.0

Q ss_pred             cCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421          7 EHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus         7 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      +|+|.|+|.|.|..| .....+.|.|.             .+|.+...+   ...+.+|+.+.|.|.+.+.|.+.+.|++
T Consensus       523 ~d~G~Y~C~a~N~~g-~~~~~~~l~V~-------------~~p~i~~~p---~~~~~~G~~v~l~C~~~~~p~~~v~W~k  585 (772)
T 3v2a_R          523 NVSALYKCEAVNKVG-RGERVISFHVT-------------RGPEITLQP---DMQPTEQESVSLWCTADRSTFENLTWYK  585 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCeEEEEEEEcccc-ccceeEEEEEE-------------CCceeeccC---CcccccCCceEEEEeccCCCCCCcEEEE
Confidence            689999999999988 44555565553             456665544   2356789999999999999999999999


Q ss_pred             CCeeeEe--------------------------ccc-----C-----------------------------------CCC
Q psy16421         87 EGGEMIT--------------------------NSF-----N-----------------------------------NTV  100 (151)
Q Consensus        87 ~~~~~~~--------------------------~~~-----~-----------------------------------~~~  100 (151)
                      ++.....                          ...     .                                   ...
T Consensus       586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~  665 (772)
T 3v2a_R          586 LGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERV  665 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccC
Confidence            4422110                          000     0                                   124


Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      +|.|...+....+.+|+++.|.|.+.|.|.|.++|+|+|..+..+
T Consensus       666 ~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~  710 (772)
T 3v2a_R          666 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED  710 (772)
T ss_dssp             ---------------------------------------------
T ss_pred             CCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCC
Confidence            566666666677889999999999999999999999998766543

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.60  E-value=2.8e-15  Score=106.23  Aligned_cols=125  Identities=14%  Similarity=0.247  Sum_probs=83.9

Q ss_pred             CccccccC------CeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeee
Q psy16421          1 MTEVSREH------MGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA   74 (151)
Q Consensus         1 i~~v~~~d------~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~   74 (151)
                      |.+++.+|      +|.|+|.|.|..|...+..+.|.+.             .+|.+...+  ....+.+|+.+.|.|.+
T Consensus        63 i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~-------------~~p~~~~~~--~~~~v~~G~~v~l~C~~  127 (388)
T 2v5m_A           63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAV-------------VAQYYEADV--NKEHVIRGNSAVIKCLI  127 (388)
T ss_dssp             ECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEE-------------CCCCCCCBC--CCEEEETTSCEEECCBC
T ss_pred             ecccChhhccccccCceEEEEEEccCCeEEecceEEEEc-------------cccccccCc--cceeeecCCcEEEEEEC
Confidence            35667776      9999999999988544556666553             345554444  45788899999999999


Q ss_pred             cCCCC---CeEEEEeCCeeeEecc------------------------c-C-------CC-----------------CC-
Q psy16421         75 SGSPP---PSIMWRREGGEMITNS------------------------F-N-------NT-----------------VP-  101 (151)
Q Consensus        75 ~g~~~---~~~~W~~~~~~~~~~~------------------------~-~-------~~-----------------~~-  101 (151)
                      .+.+.   +.+.|++++.......                        . +       ..                 .+ 
T Consensus       128 ~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~  207 (388)
T 2v5m_A          128 PSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPI  207 (388)
T ss_dssp             CTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCC
T ss_pred             cCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCC
Confidence            87653   7899999543321110                        0 0       00                 00 


Q ss_pred             ----Ceee-eCCceeEeecCCcEEEEeeecccCCCeeEEEcCCc
Q psy16421        102 ----PIVK-IPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKG  140 (151)
Q Consensus       102 ----p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~  140 (151)
                          |.+. .......+.+|+.+.|.|.+.|.|.|.+.|+|++.
T Consensus       208 ~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~  251 (388)
T 2v5m_A          208 SSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIE  251 (388)
T ss_dssp             SCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECT
T ss_pred             cCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCC
Confidence                0000 01233457889999999999999999999999753

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.58  E-value=9.2e-15  Score=98.31  Aligned_cols=65  Identities=20%  Similarity=0.158  Sum_probs=30.5

Q ss_pred             ccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCC-----
Q psy16421          4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSP-----   78 (151)
Q Consensus         4 v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~-----   78 (151)
                      ++++|+|.|+|.|.   |.. ...+.+.+             ..++.+...+  ..+.+.+|+++.|.|.+.+.+     
T Consensus        11 v~~~dsg~Y~C~a~---g~~-~~~~~~~~-------------~~~~~~~~~p--~~~~v~~G~~v~L~C~~~~~~~~~~~   71 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYS-FTNYWMNW-------------LRELVMTQSP--LTLSVTIGQPASISCKSSQSLLYSNG   71 (254)
T ss_dssp             --------------------------------------------CCCEEEEC--SEEEECTTSCEEEEEEESSCCBCSSS
T ss_pred             ecCCccEEEEEcCc---hhh-hhhhhhhe-------------eeceeEEeCC--ceEEecCCCcEEEEeeccCcccccCC
Confidence            67899999999998   322 22222222             1355565545  568889999999999999987     


Q ss_pred             CCeEEEEeC
Q psy16421         79 PPSIMWRRE   87 (151)
Q Consensus        79 ~~~~~W~~~   87 (151)
                      .+.+.|++.
T Consensus        72 ~~~v~W~k~   80 (254)
T 2c1o_A           72 KTYLNWLLQ   80 (254)
T ss_dssp             CBCEEEEEE
T ss_pred             CCceEEEEe
Confidence            489999973

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.57  E-value=2.3e-15  Score=98.68  Aligned_cols=108  Identities=19%  Similarity=0.260  Sum_probs=70.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.|.|..| .....+.|.|.             .||.+...+  ....+.+|+.+.|.|.+.|.|.|
T Consensus        73 I~~v~~~D~G~Y~C~a~n~~g-~~~~~~~l~V~-------------~p~~~~~~~--~~~~v~~g~~~~l~C~~~G~P~P  136 (203)
T 4fa8_A           73 VTAANISHDGNYLCRMKLGET-EVTKQEHLSVV-------------KPLTLSVHS--ERSQFPDFSVLTVTCTVNAFPHP  136 (203)
T ss_dssp             ESSCCGGGCEEEEEEEEETTE-EEEEEEEEEEE-------------EEEEEEEEE--EECCSSCSCCEEEEEEEEEESCC
T ss_pred             EccCCHHHCeEEEEEEEcCCC-cEEEEEEEEec-------------CCceeeecc--eeEEEcCCCEEEEEEEcCCCCCC
Confidence            578999999999999999887 45556666664             456665544  45667789999999999999999


Q ss_pred             eEEEEeCCeeeEecccCCCCCCeeeeCC-c------eeEeecCCcEEEEeeecc
Q psy16421         81 SIMWRREGGEMITNSFNNTVPPIVKIPS-Q------LIGAHEGQQLVLECISEA  127 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~~~~~p~~~~~~-~------~~~~~~g~~~~l~C~~~g  127 (151)
                      .+.|+++++.......   ....+.... .      ...+...+....+|.+..
T Consensus       137 ~v~W~~~~~~~~~~~~---~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N  187 (203)
T 4fa8_A          137 HVQWLMPEGVEPAPTA---ANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKN  187 (203)
T ss_dssp             EEEECCC---------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEES
T ss_pred             EEEEEECCeeecCccc---ccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEc
Confidence            9999985553322110   111111111 0      113456778889999864

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.56  E-value=1e-14  Score=105.81  Aligned_cols=77  Identities=14%  Similarity=0.324  Sum_probs=51.5

Q ss_pred             CccccccCCeEEEEEEEcCCCC-----------CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP-----------SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVS   69 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~-----------~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~   69 (151)
                      |.+++.+|+|.|+|.+.|..+.           .......|.|..         ....+|.+...+  ....+.+|+.+.
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~---------~~~~~P~i~~~~--~~~~~~~g~~v~  151 (457)
T 1hzh_H           83 LRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSS---------ASTKGPSVFPLA--PSSKSTSGGTAA  151 (457)
T ss_dssp             ECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECS---------CCCBCCEEEEEC--CCSCCCTTCCEE
T ss_pred             ECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecC---------CCCCCCeEEecC--ccccccCCCcEE
Confidence            5789999999999999998640           122345566531         111245544332  123457899999


Q ss_pred             EEeeecCC-CC-CeEEEEeCC
Q psy16421         70 MRCAASGS-PP-PSIMWRREG   88 (151)
Q Consensus        70 l~C~~~g~-~~-~~~~W~~~~   88 (151)
                      |.|.+.|. |. +.+.|++++
T Consensus       152 L~C~~~g~~P~~~~v~W~k~~  172 (457)
T 1hzh_H          152 LGCLVKDYFPEPVTVSWNSGA  172 (457)
T ss_dssp             EEEEEESBBSCCCEEEETTTT
T ss_pred             EEEEEeEEeCCCeEEEEEeCC
Confidence            99999886 64 789999844

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.56  E-value=1.5e-14  Score=104.06  Aligned_cols=71  Identities=23%  Similarity=0.353  Sum_probs=48.8

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCC--
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSP--   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~--   78 (151)
                      |.+++.+|+|.|+|.|.|..+..   .+.+.+.           ...++.....+  ....+.+|+.+.|.|.+.|.|  
T Consensus       185 i~~~~~~d~G~Y~C~a~n~~~~~---~~~~~~~-----------~~~~~~~~~~~--~~~~v~~G~~v~L~C~~~g~p~~  248 (438)
T 1qgc_4          185 LTKDEYERHNSYTCEATHKTSTS---PIVKSFN-----------RNECEVMLVES--GGGLVKPGGSLKLSCTASGFIFN  248 (438)
T ss_dssp             EEHHHHHTCCEEEEEEEETTCSS---CEEEEEE-----------TTC-CCEEEEE--CCEEECTTCCEEEEEEEESSCGG
T ss_pred             EeCcccCCCCeEEEEEEecccCC---ceecccc-----------cccceeEEecC--CceEEecCCcEEEEEEEcccccC
Confidence            34677889999999999987632   2333332           11122222222  456788999999999999988  


Q ss_pred             CCeEEEEeC
Q psy16421         79 PPSIMWRRE   87 (151)
Q Consensus        79 ~~~~~W~~~   87 (151)
                      .+.+.|+++
T Consensus       249 ~~~v~W~k~  257 (438)
T 1qgc_4          249 RCAMSWVRQ  257 (438)
T ss_dssp             GSCEEEEEE
T ss_pred             CcEEEEEEC
Confidence            679999984

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.55  E-value=6.4e-15  Score=103.88  Aligned_cols=123  Identities=14%  Similarity=0.166  Sum_probs=79.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC----
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG----   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g----   76 (151)
                      |.+++.+|+|.|+|.|.|..+ .....+.+.|.             .+|...     ....+.+|+.+.|.|.+.+    
T Consensus       146 i~~v~~~d~G~Y~C~a~~~~~-~~~~~~~l~v~-------------~~p~~~-----~~~~~~~G~~v~l~C~~~~~~~~  206 (363)
T 1wio_A          146 VSQLELQDSGTWTCTVLQNQK-KVEFKIDIVVL-------------AFQKAS-----SIVYKKEGEQVEFSFPLAFTVEK  206 (363)
T ss_dssp             ECSBCGGGCEECEEEEEETTE-EEEECCEECEE-------------CCSCSE-----EEEEEETBCCEEEECCCCCCCCS
T ss_pred             EeeCChhcCCEEEEEEecCCC-eEEEEEEEEEe-------------cCCCCC-----CceEEecCCEEEEEEEEeccccc
Confidence            568899999999999998754 33334444432             233221     2456788999999998877    


Q ss_pred             -CCCCeEEEEeCCeeeEecc--------cCCC-------------C--CCeeeeC-------------------------
Q psy16421         77 -SPPPSIMWRREGGEMITNS--------FNNT-------------V--PPIVKIP-------------------------  107 (151)
Q Consensus        77 -~~~~~~~W~~~~~~~~~~~--------~~~~-------------~--~p~~~~~-------------------------  107 (151)
                       .|.|.+.|++ ++..+...        ....             .  ...+.+.                         
T Consensus       207 ~~P~p~i~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~  285 (363)
T 1wio_A          207 LTGSGELWWQA-ERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQ  285 (363)
T ss_dssp             SCEEEEEEEEE-SSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEE
T ss_pred             CCCceeEEEec-CCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEE
Confidence             7789999998 44433220        0000             0  0011100                         


Q ss_pred             --CceeEeecCCcEEEEeeecccCCCe--eEEEcCCceec
Q psy16421        108 --SQLIGAHEGQQLVLECISEAYPKSV--NYWTREKGDMI  143 (151)
Q Consensus       108 --~~~~~~~~g~~~~l~C~~~g~p~~~--~~W~k~~~~~~  143 (151)
                        ...+....|+.+.|.|.+.|.|+|.  +.|+|+|..+.
T Consensus       286 ~~~l~V~~v~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~  325 (363)
T 1wio_A          286 EVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAK  325 (363)
T ss_dssp             EEEEEEEEECCCSSSEEEEEESSCCTTCCEEEECSSSSCS
T ss_pred             EEeEEEEEecCCCeeEEEEEccccCCCccEEEEeCCCcee
Confidence              0011123489999999999999998  99999986554

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.55  E-value=1.3e-14  Score=104.84  Aligned_cols=76  Identities=21%  Similarity=0.438  Sum_probs=50.7

Q ss_pred             CccccccCCeEEEEEEEcCCCC--CCccceEEEEeccccceeEEeecCCCCeeE-eCCCCCceEeecCCeEEEEeeecCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP--SVSKRIMLIVQCQYFSKLYIYTSSMPPDIL-DYPTSSDIMVREGSNVSMRCAASGS   77 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~g~~~~l~C~~~g~   77 (151)
                      |.+++.+|+|.|.|.+.|..+.  .....+.|.|..         ....+|.+. ..+   ...+.+|+.+.|.|.+.|.
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~---------~~~~~P~i~~~~~---~~~~~~g~~v~L~C~~~g~  150 (444)
T 1igt_B           83 MSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSS---------AKTTAPSVYPLAP---VCGDTTGSSVTLGCLVKGY  150 (444)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECS---------CCCBCCEEEEECC---CSSCCCSSCEEEEEEEEEE
T ss_pred             ECCCCHHHCEEEEEEEecCCcccccccCcEEEEecC---------CCCCCCceeEecc---cccCCCCCcEEEEEEEcce
Confidence            5789999999999999997652  122345566531         111244443 222   1234689999999999874


Q ss_pred             -CCC-eEEEEeCC
Q psy16421         78 -PPP-SIMWRREG   88 (151)
Q Consensus        78 -~~~-~~~W~~~~   88 (151)
                       |.| .+.|++++
T Consensus       151 ~P~p~~v~W~~~~  163 (444)
T 1igt_B          151 FPEPVTLTWNSGS  163 (444)
T ss_dssp             BSSCCEEEEGGGT
T ss_pred             eCCCcEEEEecCC
Confidence             766 99999844

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.55  E-value=2.3e-15  Score=104.74  Aligned_cols=127  Identities=13%  Similarity=0.191  Sum_probs=73.3

Q ss_pred             ccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCee-EeCCCCCceEeecCCeEEEEeeecCC-CCC-
Q psy16421          4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDI-LDYPTSSDIMVREGSNVSMRCAASGS-PPP-   80 (151)
Q Consensus         4 v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~g~~~~l~C~~~g~-~~~-   80 (151)
                      +..+|+|.|+|+|.|..+ ....  .+.+..        ......|.+ ...+  ....+.+|+.+.|.|.+.|. |.+ 
T Consensus        79 ~~~~d~g~Y~C~a~n~~~-~~~~--~~~~~~--------~~~~~~p~v~~~~p--~~~~v~~G~~v~L~C~~~g~~P~p~  145 (323)
T 2wqr_A           79 KHWLSDRTYTCQVTYQGH-TFED--STKKCA--------DSNPRGVSAYLSRP--SPFDLFIRKSPTITCLVVDLAPSKG  145 (323)
T ss_dssp             HHHHTTCCEEEEEEETTE-EEEE--EECCCC--------CSSGGGCEEEECCC--CHHHHHTSSCCEEEEEEEEECCCSS
T ss_pred             HHcCCCCcEEEEEEeCCC-Ccce--eeecCC--------CCCCCCCEEEEcCC--CHHHhccCCeEEEEEEEeccCCCCC
Confidence            345599999999999765 2211  111100        011122333 3333  34457789999999998874 555 


Q ss_pred             --eEEEEeCCeeeEecc--------c-------C-------------------C-----------------CCCCeeeeC
Q psy16421         81 --SIMWRREGGEMITNS--------F-------N-------------------N-----------------TVPPIVKIP  107 (151)
Q Consensus        81 --~~~W~~~~~~~~~~~--------~-------~-------------------~-----------------~~~p~~~~~  107 (151)
                        .+.|++++++.+...        .       .                   +                 ..+|.+...
T Consensus       146 ~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~  225 (323)
T 2wqr_A          146 TVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAF  225 (323)
T ss_dssp             CCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEE
T ss_pred             ceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEe
Confidence              899999554443210        0       0                   0                 023333222


Q ss_pred             CceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421        108 SQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      +.......|+.+.|.|.+.| .|++ .+.|+|||..+.
T Consensus       226 ~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~  263 (323)
T 2wqr_A          226 ATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLP  263 (323)
T ss_dssp             ECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECC
Confidence            11111233999999999998 4444 699999987654

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.55  E-value=1.8e-15  Score=115.56  Aligned_cols=124  Identities=24%  Similarity=0.373  Sum_probs=27.0

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCC-CCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPT-SSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++.+|+|.|+|.+.|..+ ..+..+.|.|.             .+|.+...+. .....+.+|+.+.|.|.+.+.|.
T Consensus       294 i~~v~~~d~G~Y~C~~~~~~~-~~~~~~~l~V~-------------~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~  359 (772)
T 3v2a_R          294 IDGVTRSDQGLYTCAASSGLM-TKKNSTFVRVH-------------EKPFVAFGSGMESLVEATVGERVRIPAKYLGYPP  359 (772)
T ss_dssp             ESSCCSTTCSEEEEEEECSSC-EEEEEEEEEEE-------------CCCC------------------------------
T ss_pred             ECcCCcCCCeEEEEEEEcCCc-ceeEEEEEEEe-------------CCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCC
Confidence            567899999999999999877 45556666664             4454432221 13456788999999999999999


Q ss_pred             CeEEEEeCCeeeEeccc-----C-----------------------------------CCCCCeeeeC---CceeEeecC
Q psy16421         80 PSIMWRREGGEMITNSF-----N-----------------------------------NTVPPIVKIP---SQLIGAHEG  116 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~-----~-----------------------------------~~~~p~~~~~---~~~~~~~~g  116 (151)
                      +.+.|++ +++.+....     .                                   +..+|.+...   .....+.+|
T Consensus       360 ~~v~W~~-~g~~l~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g  438 (772)
T 3v2a_R          360 PEIKWYK-NGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYG  438 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CeEEEEE-CCEeCCCCceEccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCC
Confidence            9999999 565543211     0                                   1223333221   111237889


Q ss_pred             CcEEEEeeecccCCCe-eEEEcCC
Q psy16421        117 QQLVLECISEAYPKSV-NYWTREK  139 (151)
Q Consensus       117 ~~~~l~C~~~g~p~~~-~~W~k~~  139 (151)
                      +.+.|.|.+.|.|.|. +.|++++
T Consensus       439 ~~~~l~C~~~g~p~p~~v~W~~~~  462 (772)
T 3v2a_R          439 TTQTLTCTVYAIPPPHHIHWYWQL  462 (772)
T ss_dssp             ------------------------
T ss_pred             CcEEEEeEeccCCCCcEEEEEEcC
Confidence            9999999999999997 9999974

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.53  E-value=1.1e-13  Score=89.42  Aligned_cols=94  Identities=16%  Similarity=0.345  Sum_probs=74.8

Q ss_pred             CCeeEeCCCCCceEeecCCeEEEEeeec-CCCCCeEEEEeCCeeeEecc-------------------cC----------
Q psy16421         48 PPDILDYPTSSDIMVREGSNVSMRCAAS-GSPPPSIMWRREGGEMITNS-------------------FN----------   97 (151)
Q Consensus        48 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~-g~~~~~~~W~~~~~~~~~~~-------------------~~----------   97 (151)
                      +|.|...+  ....+.+|+++.|.|.+. +.|.+.+.|++ +++.+...                   ..          
T Consensus         2 ~~~~~~~p--~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   78 (195)
T 2c5d_C            2 ESPFVGNP--GNITGARGLTGTLRCQLQVQGEPPEVHWLR-DGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLS   78 (195)
T ss_dssp             CCSEEECC--CCEEECTTCCEEEEEEEEEESSCCCCEEEE-TTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCST
T ss_pred             CCeeccCh--hheEEecCCcEEEecccccCCCCcEEEEEE-CCEEcccCCCCceEEEEccccccceeeccEEEEEecccc
Confidence            56677666  678899999999999998 89999999999 45544322                   00          


Q ss_pred             ------------------------CCCCCeeeeCCceeEeecCCcEEEEeeecccCCC-eeEEEcCCceecc
Q psy16421         98 ------------------------NTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKS-VNYWTREKGDMIA  144 (151)
Q Consensus        98 ------------------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~k~~~~~~~  144 (151)
                                              +..+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|+|++..+..
T Consensus        79 d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~  150 (195)
T 2c5d_C           79 DTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLAT  150 (195)
T ss_dssp             TCEEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSS
T ss_pred             CCcEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccC
Confidence                                    2456777777777888999999999999999999 8999999776644

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.52  E-value=3.2e-13  Score=100.50  Aligned_cols=73  Identities=19%  Similarity=0.292  Sum_probs=56.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC-CC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS-PP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-~~   79 (151)
                      |.+++.+|+|.|+|.+.|..+ ..+..+.|.|.             .+|.+...+  ....+.+|+.+.|.|.+.+. +.
T Consensus        79 I~~v~~~D~G~Y~C~~~n~~~-~~~~~~~l~V~-------------~~p~~~~~~--~~~~v~~G~~v~l~C~~~~~~~~  142 (585)
T 2ocw_A           79 IAQLSQDDSGRYKCGLGINSR-GLSFDVSLEVS-------------QGPGLLNDT--KVYTVDLGRTVTINCPFKTENAQ  142 (585)
T ss_pred             ECCCCcccCEEEEEEcccCCC-CceEEEEEEEe-------------cCccccCCC--ccEEEEcCCCEEEEEEecCCCCC
Confidence            568999999999999999877 34555555553             567776555  56788999999999999864 46


Q ss_pred             CeEEEEeCCe
Q psy16421         80 PSIMWRREGG   89 (151)
Q Consensus        80 ~~~~W~~~~~   89 (151)
                      +.+.|+++++
T Consensus       143 ~~v~W~k~~~  152 (585)
T 2ocw_A          143 KRKSLYKQIG  152 (585)
T ss_pred             ccEEEEECCC
Confidence            7899999543

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.52  E-value=1.7e-13  Score=88.10  Aligned_cols=94  Identities=18%  Similarity=0.251  Sum_probs=71.9

Q ss_pred             CeeEeCCCCCceEeecCCeEEEEeeecCCC-CCeEEEEeCCeeeEeccc----------C--------------------
Q psy16421         49 PDILDYPTSSDIMVREGSNVSMRCAASGSP-PPSIMWRREGGEMITNSF----------N--------------------   97 (151)
Q Consensus        49 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~-~~~~~W~~~~~~~~~~~~----------~--------------------   97 (151)
                      +.+...+  ....+.+|+.+.|.|.+.+.+ .+.+.|++.+++.+....          .                    
T Consensus         3 ~~v~~~p--~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (191)
T 1epf_A            3 LQVDIVP--SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV   80 (191)
T ss_dssp             CCEEEES--SSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             eEEEecC--CCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEE
Confidence            3444444  567888999999999998876 889999984455444110          0                    


Q ss_pred             ----------------CCCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         98 ----------------NTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        98 ----------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                                      +..+|.+...+....+.+|+++.|.|.+.|.|.|.+.|+|++..+..
T Consensus        81 ~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~  143 (191)
T 1epf_A           81 VTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVIL  143 (191)
T ss_dssp             EEETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGG
T ss_pred             EEcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeec
Confidence                            23466676677777889999999999999999999999999877654

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.51  E-value=1e-13  Score=89.25  Aligned_cols=95  Identities=25%  Similarity=0.421  Sum_probs=74.0

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEeccc----------C-------------------
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF----------N-------------------   97 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~----------~-------------------   97 (151)
                      .+|.+...+  ....+.+|+.+.|.|.+.+.|.+.+.|++ +++.+....          .                   
T Consensus         4 ~~P~~~~~~--~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   80 (194)
T 2a38_A            4 QAPTFTQPL--QSVVVLEGSTATFEAHISGFPVPEVSWFR-DGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSL   80 (194)
T ss_dssp             EEEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEE-SSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CCCeEEccC--CceEEECCCEEEEEEEEEecCCCEEEEEE-CCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEE
Confidence            356676666  56888999999999999999999999999 555443221          0                   


Q ss_pred             ----------------C---CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         98 ----------------N---TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        98 ----------------~---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                                      +   ..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..
T Consensus        81 ~~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~  146 (194)
T 2a38_A           81 KATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQS  146 (194)
T ss_dssp             EEEETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCC
T ss_pred             EEEcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCC
Confidence                            1   1455666666677889999999999999999999999999776643

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.51  E-value=9.8e-15  Score=105.30  Aligned_cols=76  Identities=18%  Similarity=0.514  Sum_probs=50.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC-CC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS-PP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-~~   79 (151)
                      |.+++.+|+|.|.|.+.|..+ .....+.|.|..         ....+|.+....  ....+.+|+.+.|.|.+.|. |.
T Consensus        82 I~~v~~~D~G~Y~C~~~~~~~-~~~~~~~l~V~~---------~~~~~P~i~~~~--~~~~~~~G~~v~L~C~~~g~~P~  149 (434)
T 1igy_B           82 LSSLTSDDSAVYYCVREGEVP-YWGQGTTVTVSS---------AKTTPPSVYPLA--PGSAAQTNSMVTLGCLVKGYFPE  149 (434)
T ss_dssp             ECSBCGGGCSEECCCCSSSSC-CCCCCEECEECC---------SCCBCCCEEEEC--CCCCCCCTTEEEEEEEEEEEBSS
T ss_pred             ECCCChHHCEEEEEEEEcccc-ccCCceEEEEcc---------CCCCCCeEEEcC--CccccCCCCcEEEEEEEeeecCC
Confidence            578999999999999998643 334455666531         111234443222  12235689999999999885 66


Q ss_pred             C-eEEEEeCC
Q psy16421         80 P-SIMWRREG   88 (151)
Q Consensus        80 ~-~~~W~~~~   88 (151)
                      + .+.|++++
T Consensus       150 p~~v~W~k~~  159 (434)
T 1igy_B          150 PVTVTWNSGS  159 (434)
T ss_dssp             CCEEEETTTT
T ss_pred             CeEEEEeeCC
Confidence            6 99999843

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.50  E-value=5e-14  Score=101.79  Aligned_cols=137  Identities=12%  Similarity=0.092  Sum_probs=75.1

Q ss_pred             ccccccCCeEEEEEEEcCCCCCCccceEEEEec-----cccceeEEeecCCCCee-EeCCCCCceE-eecCCeEEEEeee
Q psy16421          2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQC-----QYFSKLYIYTSSMPPDI-LDYPTSSDIM-VREGSNVSMRCAA   74 (151)
Q Consensus         2 ~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-----~~~~~~~~~~~~~~p~~-~~~~~~~~~~-~~~g~~~~l~C~~   74 (151)
                      .++..+| |.|+|.|.|..+. ......+.+..     +.........+..+|.+ ...+  .... +.+|+.+.|.|.+
T Consensus       189 ~~~~~~d-g~Y~C~a~n~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p--~~~~~~~~G~~~~L~C~~  264 (444)
T 1igt_B          189 TSSTWPS-QSITCNVAHPASS-TKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPP--KIKDVLMISLSPIVTCVV  264 (444)
T ss_dssp             CSTTTTT-SCCEEEEEETTTT-EEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECC--CHHHHHCTTSCCEEEEEE
T ss_pred             chhhcCC-CeEEEEEEeCCCC-cceEEEeccCCCCcccCCccccCCcccCCCceEEecCC--chhheeecCCCcEEEEEE
Confidence            4566778 9999999998773 21122211100     00000000011234554 3333  2222 4789999999999


Q ss_pred             cCCC----CCeEEEEeCCeeeEecc---------c-------C------------------------------------C
Q psy16421         75 SGSP----PPSIMWRREGGEMITNS---------F-------N------------------------------------N   98 (151)
Q Consensus        75 ~g~~----~~~~~W~~~~~~~~~~~---------~-------~------------------------------------~   98 (151)
                      .|.+    .+.+.|+++ ++.+...         .       .                                    +
T Consensus       265 ~g~~~~p~~~~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~  343 (444)
T 1igt_B          265 VDVSEDDPDVQISWFVN-NVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGS  343 (444)
T ss_dssp             EEECTTCCCCEEEEEET-TEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCC
T ss_pred             eecccCCCCeEEEEEEC-CccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCC
Confidence            8873    368999994 4443210         0       0                                    1


Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      ..+|.+...+.......+..+.|.|.+.| .|++ .++|+|+|..+.
T Consensus       344 ~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  390 (444)
T 1igt_B          344 VRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTEL  390 (444)
T ss_dssp             CBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             CCCCEEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEEcc
Confidence            12344433222111223445999999999 5666 799999987653

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.50  E-value=2e-13  Score=87.22  Aligned_cols=85  Identities=19%  Similarity=0.403  Sum_probs=67.9

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEeccc------------C----------------------------
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF------------N----------------------------   97 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~------------~----------------------------   97 (151)
                      ..+.+.+|+.+.|.|.+.+.|.+.+.|++ ++..+....            .                            
T Consensus        10 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~k-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~   88 (182)
T 1rhf_A           10 VKLTVSQGQPVKLNCSVEGMEEPDIQWVK-DGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   88 (182)
T ss_dssp             EEEEEETTCCEEEEEEEESCSSCCEEEEE-TTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             cceEEeCCCcEEEEEEEeCCCCCeEEEEE-CCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEE
Confidence            56778899999999999999999999999 454432210            0                            


Q ss_pred             ------CCCCCeeeeCCceeEeecCCcEEEEeeecccCCC-eeEEEcCCceec
Q psy16421         98 ------NTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKS-VNYWTREKGDMI  143 (151)
Q Consensus        98 ------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~k~~~~~~  143 (151)
                            +..+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++..+.
T Consensus        89 ~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~  141 (182)
T 1rhf_A           89 QPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIG  141 (182)
T ss_dssp             CCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECS
T ss_pred             EEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECC
Confidence                  2346777777777789999999999999999999 899999977653

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.49  E-value=3.1e-13  Score=88.54  Aligned_cols=95  Identities=22%  Similarity=0.416  Sum_probs=72.3

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecc----------------------cC-------
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS----------------------FN-------   97 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~----------------------~~-------   97 (151)
                      .+|.+...+  ....+.+|+.+.|.|.+.|.|.+.+.|+++ ++.+...                      ..       
T Consensus         5 ~~P~~~~~p--~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~-~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C   81 (212)
T 2yd6_A            5 TPPRFTRTP--VDQTGVSGGVASFICQATGDPRPKIVWNKK-GKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYEC   81 (212)
T ss_dssp             EEEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEET-TEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEE
T ss_pred             CCCeEEeCc--ceeEEecCCeEEEEEEEeeCCCCEEEEEEC-CcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEE
Confidence            567777776  568889999999999999999999999994 4432211                      00       


Q ss_pred             ----------------C-------CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         98 ----------------N-------TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        98 ----------------~-------~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                                      +       ...|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..
T Consensus        82 ~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~  151 (212)
T 2yd6_A           82 VASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDT  151 (212)
T ss_dssp             EEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC--
T ss_pred             EEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccC
Confidence                            1       1125666666677788999999999999999999999999876654

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.49  E-value=1.1e-12  Score=85.81  Aligned_cols=95  Identities=27%  Similarity=0.570  Sum_probs=74.1

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecc------------------------cC-----
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS------------------------FN-----   97 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~------------------------~~-----   97 (151)
                      .+|.+...+  ....+.+|+.+.|.|.+.|.|.+.+.|++ ++..+...                        ..     
T Consensus         5 ~pP~~~~~p--~~~~v~~G~~v~l~C~~~g~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~   81 (212)
T 2yd1_A            5 HPPEIIRKP--QNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYE   81 (212)
T ss_dssp             CCCEEEECC--CCEEEETTSCEEEEEEEECSSCCEEEEEE-TTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEE
T ss_pred             CCCEEEcCC--CceEEecCCEEEEEEEEccCCCCeEEEEE-CCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEE
Confidence            578888877  67889999999999999999999999999 44443200                        00     


Q ss_pred             ------------------CC-------CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         98 ------------------NT-------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        98 ------------------~~-------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                                        +.       .+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..
T Consensus        82 C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~  153 (212)
T 2yd1_A           82 CVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDM  153 (212)
T ss_dssp             EEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCT
T ss_pred             EEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEccc
Confidence                              01       125666666677788999999999999999999999999776654

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.48  E-value=8.4e-14  Score=89.57  Aligned_cols=95  Identities=21%  Similarity=0.331  Sum_probs=72.1

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccC-----------------------------
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN-----------------------------   97 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~-----------------------------   97 (151)
                      .+|.+...+  ....+.+|+++.|.|.+.+.|.+.+.|++ ++..+.....                             
T Consensus         6 ~~P~i~~~~--~~~~~~~G~~v~l~C~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (192)
T 2iep_A            6 KAPVITTPL--ETVDALVEEVATFMCAVESYPQPEISWTR-NKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTAN   82 (192)
T ss_dssp             EEEEESSCC--CEEEEETTSCEEEECCEEEESCCEEEEEE-TTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCceeecCc--cceeeeCCCcEEEEeeCCCCCCCeEEEEE-CCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEE
Confidence            456665555  56788899999999999998999999999 4544332110                             


Q ss_pred             --------------CCCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         98 --------------NTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        98 --------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                                    +..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+|++..+..
T Consensus        83 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~  143 (192)
T 2iep_A           83 NGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRE  143 (192)
T ss_dssp             CSSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCC
T ss_pred             cCCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccC
Confidence                          12345555556677889999999999999999999999999776543

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.48  E-value=6.2e-14  Score=101.72  Aligned_cols=138  Identities=12%  Similarity=0.111  Sum_probs=74.4

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccc--c--ceeEEeecCCCCee-EeCCCCCceE-eecCCeEEEEeee
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQY--F--SKLYIYTSSMPPDI-LDYPTSSDIM-VREGSNVSMRCAA   74 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~--~--~~~~~~~~~~~p~~-~~~~~~~~~~-~~~g~~~~l~C~~   74 (151)
                      |.++..+| |.|+|.|.|..+. ......+.+....  .  .......+..+|.+ ...+  .... +.+|+.+.|.|.+
T Consensus       198 i~~~~~~d-G~Y~C~a~n~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p--~~~~~~~~G~~v~L~C~~  273 (457)
T 1hzh_H          198 VPSSSLGT-QTYICNVNHKPSN-TKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPP--KPKDTLMISRTPEVTCVV  273 (457)
T ss_dssp             ECSGGGGT-SCCEEEEEEGGGT-EEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECC--CHHHHHCTTSCCCEEEEE
T ss_pred             ecccccCC-ceEEEEEEeCCCC-cceeEEecccCCCcccccCCCCCccccCCceEEeECc--CchhhcccCCceEEEEEE
Confidence            35677788 9999999997652 2112222111000  0  00000001124554 3333  2222 5679999999999


Q ss_pred             cCCCCC----eEEEEeCCeeeEecc---------c-------------------C------------------------C
Q psy16421         75 SGSPPP----SIMWRREGGEMITNS---------F-------------------N------------------------N   98 (151)
Q Consensus        75 ~g~~~~----~~~W~~~~~~~~~~~---------~-------------------~------------------------~   98 (151)
                      .|.+++    .+.|+++ ++.+...         .                   .                        .
T Consensus       274 ~g~~p~p~~~~i~W~k~-~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~  352 (457)
T 1hzh_H          274 VDVSHEDPEVKFNWYVD-GVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQ  352 (457)
T ss_dssp             ECCCTTCCCCEEEEEET-TEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCC
T ss_pred             EcccCCCCceEEEEEeC-CccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCC
Confidence            987543    8999994 4433110         0                   0                        0


Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecccCCC--eeEEEcCCceec
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKS--VNYWTREKGDMI  143 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~k~~~~~~  143 (151)
                      ..+|.+...+.......+..+.|.|.+.|.|++  .+.|+|||..+.
T Consensus       353 ~~~P~v~~~~~~~~~~~~~~~~l~C~~~g~~p~~~~v~W~k~g~~l~  399 (457)
T 1hzh_H          353 PREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPEN  399 (457)
T ss_dssp             CBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCCCeEEEECCCccccCCCcEEEEEEEEeEECCCCEEEEEECCEECc
Confidence            123433332221111234449999999997554  799999987653

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.48  E-value=7.3e-13  Score=85.52  Aligned_cols=105  Identities=19%  Similarity=0.385  Sum_probs=73.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|..+...+..+.|.|             ..+|.+...+  ....+.+|+.+.|.|.+.|.|.|
T Consensus        72 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V-------------~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~p  136 (195)
T 2c5d_C           72 ITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGL-------------EGLPYFLEEP--EDRTVAANTPFNLSCQAQGPPEP  136 (195)
T ss_dssp             ESSCCSTTCEEEEEEEEETTEEEECCCEEEEE-------------CCSCEEEECC--CCEEECTTCCEEEEEEEECSSCC
T ss_pred             EEeccccCCcEEEEEEEeCCCceecccEEEEE-------------ecCCeEEcCC--CcEEEcCCCEEEEEeECCCCCCC
Confidence            56889999999999999987744444566655             3678887766  56788899999999999999999


Q ss_pred             -eEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         81 -SIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        81 -~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                       .+.|++ ++..+...........+.+...      .+.....|.+..
T Consensus       137 ~~v~W~~-~~~~~~~~~~~~~~~~L~i~~~------~d~G~Y~C~a~N  177 (195)
T 2c5d_C          137 VDLLWLQ-DAVPLATAPGHGPQRSLHVPGL------NKTSSFSCEAHN  177 (195)
T ss_dssp             CEEEEEE-SSCBSSSSTTSSCCEEEEECCC------SSCEEEEEEEEE
T ss_pred             CEEEEEE-CCEeccCCCCcCCCCeEEEccc------ccCceEEEEEEc
Confidence             999999 5655443221111122333221      145689999864

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.48  E-value=6e-13  Score=85.92  Aligned_cols=95  Identities=23%  Similarity=0.430  Sum_probs=70.3

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEeccc-C----------------------------
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF-N----------------------------   97 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~-~----------------------------   97 (151)
                      .+|.+...+  ..+.+.+|+.+.|.|.+.+.|.+.+.|++ ++..+.... .                            
T Consensus         3 ~~P~~~~~~--~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   79 (197)
T 2j8h_A            3 MAPHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQV   79 (197)
T ss_dssp             CCCEEEECC--CCEEEETTSCEEEEEEEECSSCCEEEEEE-TTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEE
T ss_pred             CCCEEEEcC--CccEEcCCCEEEEEEEEeecCCCEEEEEE-CCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEE
Confidence            467787776  67889999999999999999999999999 454433211 0                            


Q ss_pred             ----------------CCCCCeeeeC-----CceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         98 ----------------NTVPPIVKIP-----SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        98 ----------------~~~~p~~~~~-----~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                                      +..+|.+..+     +....+.+|+.+.|.|.+.|.|.|.+.|+|++..+..
T Consensus        80 ~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~  147 (197)
T 2j8h_A           80 RATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDN  147 (197)
T ss_dssp             EEEETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECS
T ss_pred             EEEECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeec
Confidence                            1112222211     2445678899999999999999999999999876653

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.46  E-value=6.5e-14  Score=100.99  Aligned_cols=137  Identities=8%  Similarity=0.086  Sum_probs=74.5

Q ss_pred             ccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceE-eecCCeEEEEeeecCCC--
Q psy16421          2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM-VREGSNVSMRCAASGSP--   78 (151)
Q Consensus         2 ~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~g~~~~l~C~~~g~~--   78 (151)
                      .+++.+| |.|+|.|.|..+. ......+.+....-....+.....+..+...+  .... +.+|+.+.|.|.+.|.+  
T Consensus       185 ~~~~~~d-g~Y~C~a~n~~~~-~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p--~~~~~v~~G~~~~L~C~~~g~~p~  260 (434)
T 1igy_B          185 PSSPRPS-ETVTCNVAHPASS-TKVDKKIVPRDCGCKPCICTVPEVSSVFIFPP--KPKDTLLITVTPKVTCVVVDISKD  260 (434)
T ss_dssp             ETTTTTS-SCCEEEEECTTTT-CCEEEECCCCCCCCCCCCCCCSSSCCEEEECC--CHHHHHSTTSCCEEEEEECCCCSS
T ss_pred             cchhcCC-CcEEEEEEeCCCC-ccceeeccCCCCCCccccCCCCcCcEEEEeCC--ChHHhcccCCCcEEEEEEeccccC
Confidence            3556678 9999999999873 22222221100000000000000122233332  2122 77899999999998874  


Q ss_pred             --CCeEEEEeCCeeeEecc---------c-------C------------------------------C------CCCCee
Q psy16421         79 --PPSIMWRREGGEMITNS---------F-------N------------------------------N------TVPPIV  104 (151)
Q Consensus        79 --~~~~~W~~~~~~~~~~~---------~-------~------------------------------~------~~~p~~  104 (151)
                        .+.+.|+++ +..+...         .       .                              +      ..+|.+
T Consensus       261 P~~~~i~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v  339 (434)
T 1igy_B          261 DPEVQFSWFVD-NVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQV  339 (434)
T ss_dssp             CCCCCBCBBSS-SCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCC
T ss_pred             CCCeEEEEEeC-CcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEE
Confidence              358999994 4433210         0       0                              0      123433


Q ss_pred             eeCCceeEeecCCcEEEEeeeccc-CCC-eeEEEcCCceec
Q psy16421        105 KIPSQLIGAHEGQQLVLECISEAY-PKS-VNYWTREKGDMI  143 (151)
Q Consensus       105 ~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~k~~~~~~  143 (151)
                      ...+.......|+.+.|.|.+.|. |++ .|+|+|+|..+.
T Consensus       340 ~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  380 (434)
T 1igy_B          340 YTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPE  380 (434)
T ss_dssp             EEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCS
T ss_pred             EEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecC
Confidence            333222223467789999999995 433 799999987663

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.46  E-value=1e-12  Score=86.55  Aligned_cols=96  Identities=20%  Similarity=0.278  Sum_probs=72.8

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccC-----------------------------
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN-----------------------------   97 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~-----------------------------   97 (151)
                      ..+.+...+  ..+.+.+|+.+.|.|.+.+.|.+.+.|++ ++..+.....                             
T Consensus        17 ~~~~i~~~p--~~~~v~~G~~v~L~C~~~~~p~~~v~W~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s   93 (218)
T 3k0w_A           17 RGSKITVNP--ESKAVLAGQFVKLCCRATGHPFVQYQWFK-MNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFS   93 (218)
T ss_dssp             --CCEEECC--CCEEEETTSBEEEECEETTTTSSEEEEEE-TTEECTTCCSSEEEETTCCGGGCEEEEEEEECTTCCEEC
T ss_pred             CCCEEEECC--CCeEEeCCCcEEEEeeecCCCCCEEEEEE-CCEECCCCCCCEEEEccCChhhCeEeEEEEEcCCCCcee
Confidence            456666666  67889999999999999999999999999 4554432211                             


Q ss_pred             ------CCC---------------CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421         98 ------NTV---------------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus        98 ------~~~---------------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                            +..               +|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+|++..+...
T Consensus        94 ~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~  162 (218)
T 3k0w_A           94 QWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE  162 (218)
T ss_dssp             CCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTC
T ss_pred             eEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCC
Confidence                  001               145666666778899999999999999999999999997766543

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.46  E-value=2.2e-12  Score=87.71  Aligned_cols=96  Identities=18%  Similarity=0.321  Sum_probs=74.2

Q ss_pred             CCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccC----------------------------
Q psy16421         46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN----------------------------   97 (151)
Q Consensus        46 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~----------------------------   97 (151)
                      ..||.+...+  ..+.+.+|+.+.|.|.+.+.|.+.+.|++ ++..+.....                            
T Consensus         3 ~~pP~~~~~p--~~~~~~~G~~v~l~C~~~g~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   79 (284)
T 2rik_A            3 MAPPFFDLKP--VSVDLALGESGTFKCHVTGTAPIKITWAK-DNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY   79 (284)
T ss_dssp             CCCCEEEECC--CCEEEETTCCEEEEEEEESSSCCEEEEEE-TTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             cCCCEEEccc--cceEecCCCcEEEEEEEEcCCCCEEEEEE-CCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEE
Confidence            3678888877  67889999999999999999999999999 4544432110                            


Q ss_pred             ---------------CCCCCeeeeC-CceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         98 ---------------NTVPPIVKIP-SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        98 ---------------~~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                                     +..+|.+... .....+.+|+.+.|.|.+.|.|.+.+.|+|++..+..
T Consensus        80 ~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~  142 (284)
T 2rik_A           80 ASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE  142 (284)
T ss_dssp             EEETTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCC
T ss_pred             EEECCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcC
Confidence                           2345555544 3455688999999999999999999999999876654

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.46  E-value=7e-13  Score=86.92  Aligned_cols=95  Identities=20%  Similarity=0.507  Sum_probs=73.5

Q ss_pred             CCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccC----------------------------
Q psy16421         46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN----------------------------   97 (151)
Q Consensus        46 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~----------------------------   97 (151)
                      ..+|.+...+  ..+.+.+|+++.|.|.+.+.|.+.+.|++ ++..+.....                            
T Consensus         7 ~~~P~i~~~p--~~~~v~~G~~v~L~C~~~g~p~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~   83 (217)
T 2vr9_A            7 YQSPRIIEHP--TDLVVKKNEPATLNCKVEGKPEPTIEWFK-DGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGE   83 (217)
T ss_dssp             CCCCEEEECC--CCEEECTTSCEEECCEEECSSCCEEEEEE-TTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEE
T ss_pred             cCCCEEecCC--CceEEeCCCcEEEEEEcCCCCCCeEEEEE-CCcCccCCCccceeEEecCCceEEEEEeccCCcccCce
Confidence            3678888877  57889999999999999999999999999 5555432100                            


Q ss_pred             ---------------------CCCCCeeeeCCceeEeecCCcEEEEeee-cccCCCeeEEEcCCceec
Q psy16421         98 ---------------------NTVPPIVKIPSQLIGAHEGQQLVLECIS-EAYPKSVNYWTREKGDMI  143 (151)
Q Consensus        98 ---------------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~k~~~~~~  143 (151)
                                           ...+|.+...+....+.+|+.+.|.|.+ .|.|.|.+.|+|+|..+.
T Consensus        84 Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~  151 (217)
T 2vr9_A           84 YWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLD  151 (217)
T ss_dssp             EEEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEEC
T ss_pred             EEEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCC
Confidence                                 0113344445566678899999999999 899999999999987665

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.45  E-value=1.9e-12  Score=83.25  Aligned_cols=109  Identities=20%  Similarity=0.324  Sum_probs=73.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|. + ..+..+.|.|.             .+|.+...+  ....+.+|+.+.|.|.+.|.|.|
T Consensus        60 i~~~~~~d~G~Y~C~~~n~-~-~~~~~~~l~V~-------------~~p~~~~~~--~~~~~~~g~~v~l~C~~~g~p~p  122 (190)
T 2wv3_A           60 INKPRAEDSGEYHCVYHFV-S-APKANATIEVK-------------AAPDITGHK--RSENKNEGQDAMMYCKSVGYPHP  122 (190)
T ss_dssp             ESSCCGGGCEEEEEEEEET-T-EEEEEEEEEEE-------------CCCEEEEEC--SEEEEETTSCEEEEEEEECSSCC
T ss_pred             EecCCcccCEEEEEEEEeC-C-cccccEEEEEe-------------cCCcccccC--CcceeeCCCcEEEEEEeCccCCC
Confidence            5688999999999999998 5 55566666654             577777655  56778899999999999999999


Q ss_pred             eEEEEeC-CeeeEecccCCCCCCeeeeC-----CceeEee-cCCcEEEEeeecc
Q psy16421         81 SIMWRRE-GGEMITNSFNNTVPPIVKIP-----SQLIGAH-EGQQLVLECISEA  127 (151)
Q Consensus        81 ~~~W~~~-~~~~~~~~~~~~~~p~~~~~-----~~~~~~~-~g~~~~l~C~~~g  127 (151)
                      .+.|++. ++..+..... ...-.+...     .....+. ..+.....|.+..
T Consensus       123 ~i~W~~~~~g~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N  175 (190)
T 2wv3_A          123 EWMWRKKENGVFEEISNS-SGRFFIINKENYTELNIVNLQITEDPGEYECNATN  175 (190)
T ss_dssp             EEEEEEEETTEEEECCCT-TSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEEC
T ss_pred             ceEEEEcCCCceeeeecC-CCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEe
Confidence            9999994 3445442110 001011110     0011234 5778889999864

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.45  E-value=1.1e-12  Score=84.36  Aligned_cols=108  Identities=15%  Similarity=0.316  Sum_probs=75.0

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|..+...+..+.|.|             ..+|.+...+  ....+.+|+.+.|.|.+.|.|.+
T Consensus        66 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v-------------~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~  130 (191)
T 1epf_A           66 IYNANIDDAGIYKCVVTAEDGTQSEATVNVKI-------------FQKLMFKNAP--TPQEFKEGEDAVIVCDVVSSLPP  130 (191)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEEEEEEEEE-------------ECCSEEEECC--SSEECCTTSCEEECCEEECSSCC
T ss_pred             EccCCcccCEEEEEEEEcCCCcceEEEEEEEe-------------ecCceEecCC--CcEeecCCCeEEEEEEECCCCCC
Confidence            56889999999999999987534444555544             3677777766  56788899999999999999999


Q ss_pred             eEEEEeCCeeeEecccC----CCCCCeeeeCCceeEeecCCcEEEEeeeccc
Q psy16421         81 SIMWRREGGEMITNSFN----NTVPPIVKIPSQLIGAHEGQQLVLECISEAY  128 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~  128 (151)
                      .+.|++ ++..+.....    ......+.+.    .+...+.....|.+...
T Consensus       131 ~v~W~~-~~~~~~~~~~~~~~~~~~~~L~i~----~~~~~d~G~Y~C~a~n~  177 (191)
T 1epf_A          131 TIIWKH-KGRDVILKKDVRFIVLSNNYLQIR----GIKKTDEGTYRCEGRIL  177 (191)
T ss_dssp             EEEEEE-TTEEGGGGCCTTEEECTTSCEEET----TCCGGGCEEEEEEEEEG
T ss_pred             EEEEEE-CCEEeeccCCceEEEecCCeEEEC----CCChhhCEEEEEEEEEe
Confidence            999999 5555442211    0011122222    13456777899998653

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.44  E-value=7.6e-13  Score=84.49  Aligned_cols=103  Identities=25%  Similarity=0.524  Sum_probs=74.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|..+...+..+.|.|.             .+|.+...+  ....+.+|+.+.|.|.+.+.|.|
T Consensus        64 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~-------------~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~p  128 (182)
T 1rhf_A           64 LKSVERSDAGRYWCQVEDGGETEISQPVWLTVE-------------GVPFFTVEP--KDLAVPPNAPFQLSCEAVGPPEP  128 (182)
T ss_dssp             ESSCCGGGCEEEEEEESSCTTCEECCCEEEEEE-------------CSCEEEECC--CCEEECTTCCEEEEEEEECSSSC
T ss_pred             EeecCcccCeEEEEEEEcCCCcEEEEEEEEEEe-------------cCCeEEecC--cceEecCCCEEEEEeEecCCCCC
Confidence            568899999999999999876445566777664             678877766  56788899999999999999998


Q ss_pred             -eEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         81 -SIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        81 -~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                       .+.|++ ++..+....  .....+.+...      .+.....|.+..
T Consensus       129 ~~v~W~~-~~~~~~~~~--~~~~~L~i~~~------~d~G~Y~C~a~N  167 (182)
T 1rhf_A          129 VTIVWWR-GTTKIGGPA--PSPSVLNVTGV------TQSTMFSCEAHN  167 (182)
T ss_dssp             CEEEEEE-TTEECSCSE--ESSEEEEECCC------SSCEEEEEEEEE
T ss_pred             CEEEEEc-CCeECCCCC--CCceEEEEecc------ccCeEEEEEEEC
Confidence             999999 555543211  11222333221      355689999864

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.44  E-value=1.3e-12  Score=89.13  Aligned_cols=95  Identities=18%  Similarity=0.242  Sum_probs=71.8

Q ss_pred             CCeeEeCCCCCceEeecCCeEEEEeeecCCC-CCeEEEEeCCeeeEeccc----------C-------------------
Q psy16421         48 PPDILDYPTSSDIMVREGSNVSMRCAASGSP-PPSIMWRREGGEMITNSF----------N-------------------   97 (151)
Q Consensus        48 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~-~~~~~W~~~~~~~~~~~~----------~-------------------   97 (151)
                      ++.+...+  ....+.+|+.+.|.|.+.+.+ .+.+.|++.++..+....          .                   
T Consensus         2 ~~~v~~~p--~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   79 (291)
T 1qz1_A            2 VLQVDIVP--SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKC   79 (291)
T ss_dssp             CCCEEEES--SSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             CcceEecC--CCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEE
Confidence            34555555  567889999999999999976 689999984454433110          0                   


Q ss_pred             -----------------CCCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         98 -----------------NTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        98 -----------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                                       +..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+..
T Consensus        80 ~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~  143 (291)
T 1qz1_A           80 VVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVIL  143 (291)
T ss_dssp             EEECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSST
T ss_pred             EEEcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEccc
Confidence                             22356666667777899999999999999999999999999876644

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.43  E-value=1.1e-12  Score=84.39  Aligned_cols=95  Identities=20%  Similarity=0.298  Sum_probs=69.4

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccC-----------------------------
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN-----------------------------   97 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~-----------------------------   97 (151)
                      .+|.+...+  ..+.+.+|+.+.|.|.+.+.|.+.+.|++ ++..+.....                             
T Consensus         6 ~~P~~~~~~--~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   82 (197)
T 3lcy_A            6 EAPGIRKEM--KDVTTKLGEAAQLSCQIVGRPLPDIKWYR-FGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIA   82 (197)
T ss_dssp             EEEEEEECC--CCEEEETTSEEEEEEEEEEESCCEEEEEE-TTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEE
T ss_pred             CCCcccccC--CceEEeCCCcEEEEEEEecCCCCEEEEEE-CCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEE
Confidence            467777666  57889999999999999998999999999 4554432211                             


Q ss_pred             --------------CCCCCeeee---CCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         98 --------------NTVPPIVKI---PSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        98 --------------~~~~p~~~~---~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                                    +..+|.+..   ......+.+|+.+.|.|.+.|.|.|.+.|++++..+..
T Consensus        83 ~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~  146 (197)
T 3lcy_A           83 TNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQN  146 (197)
T ss_dssp             ECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC
T ss_pred             ECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCC
Confidence                          111222221   12445678899999999999999999999998766543

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.42  E-value=9.2e-13  Score=96.08  Aligned_cols=138  Identities=14%  Similarity=0.194  Sum_probs=77.2

Q ss_pred             ccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeE------EeecCCCCee-EeCCCCCceEeecCCeEEEEeee
Q psy16421          2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLY------IYTSSMPPDI-LDYPTSSDIMVREGSNVSMRCAA   74 (151)
Q Consensus         2 ~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~------~~~~~~~p~~-~~~~~~~~~~~~~g~~~~l~C~~   74 (151)
                      ..+..+|+|.|+|.|.|..+......+.+.|.........      ...+ .+|.+ ...+  ....+.+|+.+.|.|.+
T Consensus       195 ~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~-~~p~v~~~~p--~~~~~~~G~~v~L~C~~  271 (475)
T 1iga_A          195 PATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSC-CHPRLSLHRP--ALEDLLLGSEANLTCTL  271 (475)
T ss_pred             chhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCCC-CCcEEEEcCC--ChHHhccCCceEEEEEE
Confidence            3455678999999999987632233333322100000000      0001 24444 3322  22335789999999999


Q ss_pred             cCCCC---CeEEEEeCCeeeEec---------------------c-----c-C------------------C-----CCC
Q psy16421         75 SGSPP---PSIMWRREGGEMITN---------------------S-----F-N------------------N-----TVP  101 (151)
Q Consensus        75 ~g~~~---~~~~W~~~~~~~~~~---------------------~-----~-~------------------~-----~~~  101 (151)
                      .|.++   +.+.| . ++.....                     .     + +                  +     ..+
T Consensus       272 ~g~~p~~~~~i~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~  349 (475)
T 1iga_A          272 TGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFR  349 (475)
T ss_pred             EcccCCCceEEEE-C-CCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCC
Confidence            88644   68999 4 3322100                     0     0 0                  1     233


Q ss_pred             CeeeeCC-ceeEeecCCcEEEEeeeccc-CC-CeeEEEcCCceecc
Q psy16421        102 PIVKIPS-QLIGAHEGQQLVLECISEAY-PK-SVNYWTREKGDMIA  144 (151)
Q Consensus       102 p~~~~~~-~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~k~~~~~~~  144 (151)
                      |.+.+.+ ....+.+|+.+.|.|.+.|. |+ +.|.|+|||..+..
T Consensus       350 P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~  395 (475)
T 1iga_A          350 PEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPR  395 (475)
T ss_pred             CeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCC
Confidence            4443332 22235679999999999996 43 47999999776643

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.42  E-value=1e-12  Score=84.17  Aligned_cols=94  Identities=21%  Similarity=0.436  Sum_probs=65.2

Q ss_pred             CCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccC------------------------------
Q psy16421         48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN------------------------------   97 (151)
Q Consensus        48 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~------------------------------   97 (151)
                      +|.|...+  ....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+.....                              
T Consensus         2 ~~~~~~~~--~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   78 (189)
T 2v5t_A            2 MLTFREVV--SPQEFKQGEDAEVVCRVSSSPAPAVSWLY-HNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRV   78 (189)
T ss_dssp             CCEEEECC--SSEEEETTSCEEECCEEECSSCCEEEEEC------CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEE
T ss_pred             CceeeccC--CCEEEeCCCcEEEEEEEcCCCCCEEEEEE-CCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEE
Confidence            45565555  56788999999999999999999999999 4444332100                              


Q ss_pred             --------------CCCCCeeeeCCc--eeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         98 --------------NTVPPIVKIPSQ--LIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        98 --------------~~~~p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                                    +..+|.+.....  ...+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..
T Consensus        79 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~  141 (189)
T 2v5t_A           79 EARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE  141 (189)
T ss_dssp             TTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCC
T ss_pred             cCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcC
Confidence                          112333333322  34567899999999999999999999999776543

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.41  E-value=1.7e-12  Score=83.36  Aligned_cols=107  Identities=24%  Similarity=0.461  Sum_probs=73.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|..+......+.|.|.             .+|.+...+  ....+.+|+.+.|.|.+.+.|.+
T Consensus        66 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~-------------~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~  130 (192)
T 2iep_A           66 ILSVEDSDDGIYCCTANNGVGGAVESCGALQVK-------------MKPKITRPP--INVKIIEGLKAVLPCTTMGNPKP  130 (192)
T ss_dssp             ESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEE-------------EEEEEEECC--CCEEEETTSCEEECCEEEEESCC
T ss_pred             EcCCCcccCeEEEEEEEcCCCceeEeEEEEEEE-------------eCCccccCC--cceEEeCCCcEEEEEEEeccCCc
Confidence            468899999999999999887544555555554             456666655  46788899999999999999999


Q ss_pred             eEEEEeCCeeeEecccC--CCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         81 SIMWRREGGEMITNSFN--NTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      .+.|++ ++..+.....  ......+.+.    .+...+.....|.+..
T Consensus       131 ~v~W~~-~~~~~~~~~~~~~~~~~~L~i~----~~~~~d~G~Y~C~a~n  174 (192)
T 2iep_A          131 SVSWIK-GDSALRENSRIAVLESGSLRIH----NVQKEDAGQYRCVAKN  174 (192)
T ss_dssp             EEEEEE-TTEECCCCSSEEECTTSCEEES----SCCGGGCEEEEEEEEE
T ss_pred             eEEEEe-CCEEccCCCcEEEecCCcEEEe----cCChhhCEEEEEEEEc
Confidence            999999 5555443221  0011122222    1334677889999863

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.41  E-value=6.1e-12  Score=82.79  Aligned_cols=116  Identities=22%  Similarity=0.215  Sum_probs=76.6

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccce--eEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSK--LYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSP   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~   78 (151)
                      |.+++.+|+|.|+|.+.|..+...+..+.|.|.......  ........+|.+...+  ....+.+|+.+.|.|.+.+.|
T Consensus        69 i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~v~~G~~v~L~C~~~g~p  146 (218)
T 3k0w_A           69 FNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP--TSQKLMPGSTLVLQCVAVGSP  146 (218)
T ss_dssp             ETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECC--CCEEECTTCCEEEECEEEBSS
T ss_pred             EccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECC--CceeecCCCcEEEEEEecccC
Confidence            568899999999999999987555666777775211000  0000001235666655  567888999999999999999


Q ss_pred             CCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         79 PPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        79 ~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      .+.+.|++ ++..+...    ....+.+..    +...+.....|.+..
T Consensus       147 ~~~v~W~~-~~~~~~~~----~~~~L~i~~----v~~~d~G~Y~C~a~n  186 (218)
T 3k0w_A          147 IPHYQWFK-NELPLTHE----TKKLYMVPY----VDLEHQGTYWCHVYN  186 (218)
T ss_dssp             CCEEEEEE-TTEECTTC----CSSEEEESS----CCGGGCEEEEEEEEC
T ss_pred             CCeEEEEE-CCEECCCC----CCCEEEEee----cChhcCEEEEEEEEc
Confidence            99999999 56554421    112333322    345667788898764

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.41  E-value=1.3e-12  Score=85.19  Aligned_cols=95  Identities=25%  Similarity=0.575  Sum_probs=71.1

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEeccc------------C-----------------
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF------------N-----------------   97 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~------------~-----------------   97 (151)
                      .+|.+...+  ..+.+.+|+.+.|.|.+.+.|.+.+.|++ ++..+....            .                 
T Consensus         8 ~pp~i~~~p--~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   84 (212)
T 2v9r_A            8 FPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDE   84 (212)
T ss_dssp             EEEEEEECC--CCEEECTTCCEEECCEEEEESCCEEEEEE-TTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSC
T ss_pred             CCcceecCC--CceEEeCCCcEEEEEEcCCCCCCEEEEEE-CCEEeeccccccccceEEecCCcEEEEEEEecCCCcccC
Confidence            467777766  57889999999999999999999999999 444432110            0                 


Q ss_pred             -----------------------CCCCCeeeeCCceeEeecCCcEEEEeee-cccCCCeeEEEcCCceecc
Q psy16421         98 -----------------------NTVPPIVKIPSQLIGAHEGQQLVLECIS-EAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        98 -----------------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~k~~~~~~~  144 (151)
                                             ...++.+...+....+.+|+.+.|.|.+ .|.|.|.+.|+|+|..+..
T Consensus        85 G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~  155 (212)
T 2v9r_A           85 GVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDD  155 (212)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECT
T ss_pred             eEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCC
Confidence                                   0112333334556678899999999998 8999999999999776654

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.40  E-value=3.1e-12  Score=82.26  Aligned_cols=92  Identities=20%  Similarity=0.361  Sum_probs=69.6

Q ss_pred             CCCeeEeCCCCCceEeec-CCeEEEEeeecCCCC--CeEEEEeCCeeeEecccC--------------------------
Q psy16421         47 MPPDILDYPTSSDIMVRE-GSNVSMRCAASGSPP--PSIMWRREGGEMITNSFN--------------------------   97 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~-g~~~~l~C~~~g~~~--~~~~W~~~~~~~~~~~~~--------------------------   97 (151)
                      .+|.+...+   ...+.+ |+.+.|.|.+.+.+.  +.+.|++ ++..+.....                          
T Consensus         2 ~~P~i~~~~---~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   77 (190)
T 2wv3_A            2 NEPRIVTSE---EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTK-NGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHF   77 (190)
T ss_dssp             -CCEEEECC---CEECCCSSSCEEEEEEEEECSSCEEEEEEEE-TTEECTTCCBCCSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCcccccc---eEEEccCCceEEEEEEeccCCCCceEEEEEE-CCEECcccceEeccEEEEEecCCcccCEEEEEEEEe
Confidence            356666643   466667 999999999988776  7899999 5555432211                          


Q ss_pred             -----------CCCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEc--CCcee
Q psy16421         98 -----------NTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR--EKGDM  142 (151)
Q Consensus        98 -----------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k--~~~~~  142 (151)
                                 +..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|  +|..+
T Consensus        78 ~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~  135 (190)
T 2wv3_A           78 VSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFE  135 (190)
T ss_dssp             TTEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEE
T ss_pred             CCcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCcee
Confidence                       2456777777777789999999999999999999999999  55443

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.39  E-value=1.7e-13  Score=89.76  Aligned_cols=83  Identities=19%  Similarity=0.257  Sum_probs=60.1

Q ss_pred             ceEeecCCeEEEEee---ecCCCCCeEEEEeCCeeeEec-------------------------ccC-------------
Q psy16421         59 DIMVREGSNVSMRCA---ASGSPPPSIMWRREGGEMITN-------------------------SFN-------------   97 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~---~~g~~~~~~~W~~~~~~~~~~-------------------------~~~-------------   97 (151)
                      .+++..|+.+.|.|.   +.+.|.+.+.|+| ++.....                         ...             
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   80 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFK-LGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH   80 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEE-EETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEE-cCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHH
Confidence            467788999999995   6778999999998 3321100                         000             


Q ss_pred             ----------------------CCCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421         98 ----------------------NTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus        98 ----------------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                                            +..||.+...+....+.+|+++.|.|.+.|.|.|.++|+++++.+
T Consensus        81 ~G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~  147 (203)
T 4fa8_A           81 DGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVE  147 (203)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC----
T ss_pred             CeEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeee
Confidence                                  234566666666777889999999999999999999999876544

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.39  E-value=3.4e-12  Score=90.37  Aligned_cols=94  Identities=24%  Similarity=0.431  Sum_probs=69.4

Q ss_pred             CeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCC-eeeEecc-----c--------C-----------------
Q psy16421         49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG-GEMITNS-----F--------N-----------------   97 (151)
Q Consensus        49 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~-~~~~~~~-----~--------~-----------------   97 (151)
                      |.+...   ....+.+|+.+.|.|.+.|.|.+.+.|++++ +..+...     .        .                 
T Consensus         2 P~i~~~---~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   78 (389)
T 2jll_A            2 PHIIQL---KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRY   78 (389)
T ss_dssp             CEEEEC---CCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEE
T ss_pred             CeEEec---CceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEE
Confidence            555552   3567888999999999999999999999951 4443210     0        0                 


Q ss_pred             ------------------CCCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421         98 ------------------NTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus        98 ------------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                                        +..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+|+|..+...
T Consensus        79 ~C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~  144 (389)
T 2jll_A           79 DCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAK  144 (389)
T ss_dssp             EEEEECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCT
T ss_pred             EEEEEeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcc
Confidence                              223555555555557789999999999999999999999997766543

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.38  E-value=3e-12  Score=88.04  Aligned_cols=96  Identities=20%  Similarity=0.402  Sum_probs=71.3

Q ss_pred             CCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecc-----------------------cC-----
Q psy16421         46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS-----------------------FN-----   97 (151)
Q Consensus        46 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~-----------------------~~-----   97 (151)
                      ..+|.|...+  ....+.+|+.+.|.|.+.|.|.+.+.|++ +++.+...                       ..     
T Consensus         4 ~~~P~~~~~p--~~~~v~~G~~v~l~C~~~g~p~~~i~W~k-~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~   80 (304)
T 2yd9_A            4 EEPPRFIKEP--KDQIGVSGGVASFVCQATGDPKPRVTWNK-KGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYE   80 (304)
T ss_dssp             CCCCEEEECC--CCEEEETTSCEEEEEEEECSSCCEEEEC--------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEE
T ss_pred             ccCCeeeecC--CceEecCCCeEEEEEEEEEeCCCeEEEEE-CCEECCCCceEEEEecCCCceEEEEecccccCCCeEEE
Confidence            3678888877  67889999999999999999999999998 44332110                       00     


Q ss_pred             -----------------CC-------CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         98 -----------------NT-------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        98 -----------------~~-------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                                       +.       ..|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+..
T Consensus        81 C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~  151 (304)
T 2yd9_A           81 CVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDP  151 (304)
T ss_dssp             EEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCG
T ss_pred             EEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcC
Confidence                             11       115666667777889999999999999999999999999876543

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.37  E-value=6e-12  Score=86.39  Aligned_cols=95  Identities=23%  Similarity=0.430  Sum_probs=70.1

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEeccc-C----------------------------
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF-N----------------------------   97 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~-~----------------------------   97 (151)
                      .+|.+...+  ..+.+.+|+.+.|.|.+.|.|.+.+.|++ ++..+.... .                            
T Consensus         3 ~~P~~~~~p--~~~~v~~G~~v~l~C~~~g~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   79 (305)
T 2nzi_A            3 MAPHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQV   79 (305)
T ss_dssp             CCCEEEECC--CCEEECTTCCEEEEEEEECSSCCEEEEEE-TTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEE
T ss_pred             CCCeeeecc--cceEEeCCCcEEEEEEEeCCCCCeEEEEE-CCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEE
Confidence            478887777  57889999999999999999999999999 444432110 0                            


Q ss_pred             ----------------CCCCCeeeeC-----CceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         98 ----------------NTVPPIVKIP-----SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        98 ----------------~~~~p~~~~~-----~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                                      +..+|.+...     +....+..|+.+.|.|.+.|.|.|.+.|+|++..+..
T Consensus        80 ~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~  147 (305)
T 2nzi_A           80 RATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDN  147 (305)
T ss_dssp             EEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCS
T ss_pred             EEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCC
Confidence                            1122222211     2446678899999999999999999999998766543

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.36  E-value=9.8e-12  Score=79.47  Aligned_cols=85  Identities=24%  Similarity=0.401  Sum_probs=67.0

Q ss_pred             eEeecCCeEEEEeeecCCCCC--eEEEEeCCeeeEecccC---------------------------------CCCCCee
Q psy16421         60 IMVREGSNVSMRCAASGSPPP--SIMWRREGGEMITNSFN---------------------------------NTVPPIV  104 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g~~~~--~~~W~~~~~~~~~~~~~---------------------------------~~~~p~~  104 (151)
                      ..+.+|+.+.|.|.+.+.+.|  .+.|++ ++..+.....                                 +..+|.+
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k-~~~~l~~~~~~~~~~~l~i~~~~d~G~Y~C~~~n~~~~~~~l~V~~~P~~   86 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLK-GGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRV   86 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEES-SSEEEECTTCCCSEEEEEECGGGCCEEEEEEEESTTSCEEEEEECCSCCC
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEe-CCEEeecccccCCcEEEEEechhhCeEEEEEEECCcCcEEEEEEecCCce
Confidence            467789999999999887776  899999 5666553321                                 3456777


Q ss_pred             eeCCceeEeecCCcEEEEeeecccC-CCeeEEEc---CCceeccC
Q psy16421        105 KIPSQLIGAHEGQQLVLECISEAYP-KSVNYWTR---EKGDMIAN  145 (151)
Q Consensus       105 ~~~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~k---~~~~~~~~  145 (151)
                      ...+....+.+|+.+.|.|.+.|.| .|.+.|+|   ++..++.+
T Consensus        87 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~  131 (184)
T 3b5h_A           87 KAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMN  131 (184)
T ss_dssp             EESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCT
T ss_pred             eecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeec
Confidence            7777777889999999999999999 79999999   66655543

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.36  E-value=5.9e-12  Score=82.60  Aligned_cols=85  Identities=11%  Similarity=0.107  Sum_probs=64.3

Q ss_pred             ceEeecCCeEEEEeeec-CCCCCeEEEEeCCeeeEecccC--------------------------------C-------
Q psy16421         59 DIMVREGSNVSMRCAAS-GSPPPSIMWRREGGEMITNSFN--------------------------------N-------   98 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~-g~~~~~~~W~~~~~~~~~~~~~--------------------------------~-------   98 (151)
                      ...+.+|+.+.|.|.+. +.|.|.+.|++ +++++....+                                +       
T Consensus        11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~k-ng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng~a~~~~   89 (207)
T 3rbs_A           11 AVEILEKGQVRFWMQAEKLSGNAKVNYIF-NEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHS   89 (207)
T ss_dssp             EEEECGGGCEEEEEECSCCCSCCEEEEEE-TTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEETTEEEEE
T ss_pred             ceEEEeCCeEEEEEEEecCCCCCEEEEEE-CCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECCCeEEEE
Confidence            46788999999999985 47999999999 6666632211                                0       


Q ss_pred             -C------------------------CCCeeeeCCceeEeecCCcEEEEeeeccc-CCCeeEEEcCCceeccC
Q psy16421         99 -T------------------------VPPIVKIPSQLIGAHEGQQLVLECISEAY-PKSVNYWTREKGDMIAN  145 (151)
Q Consensus        99 -~------------------------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~k~~~~~~~~  145 (151)
                       .                        .+|.|.... ...+.+|+++.|.|.+.|. |.|.++|+|||..+..+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~  161 (207)
T 3rbs_A           90 TVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD  161 (207)
T ss_dssp             EEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCC
T ss_pred             EEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCC
Confidence             0                        134444433 3678899999999999998 99999999998877553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.36  E-value=7.6e-13  Score=92.99  Aligned_cols=112  Identities=17%  Similarity=0.192  Sum_probs=77.3

Q ss_pred             CCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeC
Q psy16421          8 HMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRRE   87 (151)
Q Consensus         8 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~   87 (151)
                      |.|.|+|.+.+...     .+.             +....+|.+...+  ....+.+|+.+.|.|.+.|.|.+.+.|+++
T Consensus       136 ~~~~~~C~~~~~l~-----~l~-------------~~~c~~P~i~~~~--~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~  195 (347)
T 2ifg_A          136 PEQKLQCHGQGPLA-----HMP-------------NASCGVPTLKVQV--PNASVDVGDDVLLRCQVEGRGLEQAGWILT  195 (347)
T ss_dssp             GGGCCCCSSSSCSS-----CCC-------------CTTCCCCEEEEEC--CSSCCBTTCCEEEEEEEECSSCCCCCEEES
T ss_pred             cccCCCCCCChHHh-----cCC-------------cccCCCCceeccC--CceEEeCCCcEEEEEEEecCCCCEEEEEcC
Confidence            57899998766221     111             1223578887766  567889999999999999999999999995


Q ss_pred             CeeeEecccC-----------------------------------------CCCCCeeeeCCceeEeecCCcEEEEeeec
Q psy16421         88 GGEMITNSFN-----------------------------------------NTVPPIVKIPSQLIGAHEGQQLVLECISE  126 (151)
Q Consensus        88 ~~~~~~~~~~-----------------------------------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~  126 (151)
                      ++........                                         +..+|.+    ......+|+.+.|.|.+.
T Consensus       196 ~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~  271 (347)
T 2ifg_A          196 ELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVD  271 (347)
T ss_dssp             CCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEE----EECCCEESSSEEEEEEEE
T ss_pred             CceeecccccceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCee----eeccCccCceEEEEEEee
Confidence            4332111000                                         1112222    122356799999999999


Q ss_pred             ccCCCeeEEEcCCceec
Q psy16421        127 AYPKSVNYWTREKGDMI  143 (151)
Q Consensus       127 g~p~~~~~W~k~~~~~~  143 (151)
                      |.|.|.+.|+|+|..+.
T Consensus       272 g~P~p~i~W~~~g~~l~  288 (347)
T 2ifg_A          272 GQPAPSLRWLFNGSVLN  288 (347)
T ss_dssp             EESCCEEEEEETTEECC
T ss_pred             ecCCCcEEEEeCCEECC
Confidence            99999999999977665

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.36  E-value=1.7e-12  Score=83.48  Aligned_cols=109  Identities=21%  Similarity=0.365  Sum_probs=73.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|..+ .....+.|.|..          ...+|.+...+  ....+.+|+.+.|.|.+.+.|.+
T Consensus        67 i~~~~~~d~G~Y~C~~~n~~~-~~~~~~~l~v~~----------~~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~  133 (194)
T 2a38_A           67 IPAVTKANSGRYSLKATNGSG-QATSTAELLVKA----------ETAPPNFVQRL--QSMTVRQGSQVRLQVRVTGIPTP  133 (194)
T ss_dssp             ESSCCGGGCEEEEEEEEETTE-EEEEEEEEEEEC----------CCEEEEEEECC--CCEEECTTEEEEEEEEEEEESCC
T ss_pred             ECCCCcccCEEEEEEEEcCCc-eEeEEEEEEEcc----------CCCCCEEEeCC--ccEEEcCCCEEEEEEEEEEecCC
Confidence            468899999999999999877 444555565531          12456666555  46778899999999999999999


Q ss_pred             eEEEEeCCeeeEecccCCCCCCeeeeC-----CceeEeecCCcEEEEeeecc
Q psy16421         81 SIMWRREGGEMITNSFNNTVPPIVKIP-----SQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~~~g~~~~l~C~~~g  127 (151)
                      .+.|++ ++..+.....    ..+...     .....+...+.....|.+..
T Consensus       134 ~v~W~~-~~~~~~~~~~----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  180 (194)
T 2a38_A          134 VVKFYR-DGAEIQSSLD----FQISQEGDLYSLLIAEAYPEDSGTYSVNATN  180 (194)
T ss_dssp             EEEEEE-TTEECCCSSS----EEEEEETTEEEEEEEEECGGGCEEEEEEEEE
T ss_pred             eEEEEE-CCEECCCCCc----EEEEEcCCEEEEEECCCChhcCeEEEEEEEe
Confidence            999999 5665542211    111111     11123455777889999864

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.35  E-value=3.5e-12  Score=83.75  Aligned_cols=110  Identities=16%  Similarity=0.292  Sum_probs=66.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.| .+ .....+.|.|.             .++......  ....+.+|+.+.|.|.+.|.|.|
T Consensus        84 I~~v~~~D~G~Y~C~~~~-~~-~~~~~~~l~V~-------------~~~~~~~~~--~~~~~~~g~~v~L~C~~~g~P~p  146 (222)
T 3sbw_C           84 ITDVKLQDAGVYRCMISY-GG-ADYKRITVKVN-------------APYNKINQR--ILVVDPVTSEHELTCQAEGYPKA  146 (222)
T ss_dssp             ESSCCGGGCEEEEEEEES-SS-EEEEEEEEEEE-------------BCCCCCEEE--EEEEETTTTEEEEEEEEEEBSCC
T ss_pred             EcCcccccCeEEEEEEEe-CC-CceeEEEEEEE-------------CCCCCCCce--eeeeecCCCcEEEEEEecCCCCC
Confidence            578999999999999999 34 44455666664             222211100  01245679999999999999999


Q ss_pred             eEEEEeCCeeeEecccC---CCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         81 SIMWRREGGEMITNSFN---NTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      .+.|++++++.+.....   ...............+...+....+|.+..
T Consensus       147 ~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n  196 (222)
T 3sbw_C          147 EVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRR  196 (222)
T ss_dssp             EEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEE
T ss_pred             eEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEe
Confidence            99999964665542211   000000000011122445667789999864

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.35  E-value=5.6e-12  Score=82.47  Aligned_cols=114  Identities=26%  Similarity=0.396  Sum_probs=75.9

Q ss_pred             Cccccc-cCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSR-EHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++. +|+|.|+|.+.|..+...+..+.|.|......      ....|.+...+  ....+.+|+.+.|.|.+.|.|.
T Consensus        68 i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~------~~~~p~~~~~~--~~~~~~~g~~v~l~C~~~g~p~  139 (212)
T 2yd1_A           68 IEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKT------PAGFPVITQGP--GTRVIEVGHTVLMTCKAIGNPT  139 (212)
T ss_dssp             ESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCS------CTTCCEEEECC--CCEEEETTCCEEECCEEECSSC
T ss_pred             EEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCC------CCCCCeeEeCC--CceEeecCCeEEEEEEeccCCC
Confidence            467888 99999999999998843666777777521100      01236676665  5677889999999999999999


Q ss_pred             CeEEEEeCCeeeEecccCCC--CCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         80 PSIMWRREGGEMITNSFNNT--VPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +.+.|++ ++..+.......  ..-.+.+.    .+...+.....|.+..
T Consensus       140 p~i~W~~-~~~~~~~~~~~~~~~~~~L~i~----~v~~~d~G~Y~C~a~N  184 (212)
T 2yd1_A          140 PNIYWIK-NQTKVDMSNPRYSLKDGFLQIE----NSREEDQGKYECVAEN  184 (212)
T ss_dssp             CEEEEEE-TTEECCTTSTTEEEETTEEEEC----SCCGGGCEEEEEEEEE
T ss_pred             CeEEEEE-CCeEcccCCCeEEccCCeEEEc----cCChhhCEEEEEEeec
Confidence            9999999 555554321100  00122221    2345677799999863

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.35  E-value=8e-12  Score=91.13  Aligned_cols=76  Identities=20%  Similarity=0.413  Sum_probs=50.3

Q ss_pred             CccccccCCeEEEEEEEcCCCC-----CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeec
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP-----SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAAS   75 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~-----~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~   75 (151)
                      |.+++.+|+|.|.|.+.+..+.     .....+.|.|..         ....+|.+....   ...+.+|+.+.|.|.+.
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~---------~~~~~P~i~~~~---~~~~~~g~~v~L~C~~~  151 (475)
T 1iga_A           84 LSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSS---------ASPTSPKVFPLS---LCSTQPDGNVVIACLVQ  151 (475)
T ss_pred             ECCCChhhCEEEEEEEeccCCCccceeeecCceEEEecc---------CCCcCCeEEecC---ccccCCCCeEEEEEEEe
Confidence            6789999999999999997652     122344565531         111345444332   11236899999999998


Q ss_pred             CC-CC-C-eEEEEeCC
Q psy16421         76 GS-PP-P-SIMWRREG   88 (151)
Q Consensus        76 g~-~~-~-~~~W~~~~   88 (151)
                      |. |. + .+.|++++
T Consensus       152 g~~P~~p~~v~W~~~~  167 (475)
T 1iga_A          152 GFFPQEPLSVTWSESG  167 (475)
T ss_pred             eecCCCceEEEEcCCC
Confidence            86 55 4 99999843

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.34  E-value=6.3e-12  Score=82.29  Aligned_cols=113  Identities=27%  Similarity=0.346  Sum_probs=73.0

Q ss_pred             Cccc-cccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEV-SREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v-~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.++ +.+|+|.|+|.+.|..+ .....+.|.|.....      .....|.+...+  ....+.+|+.+.|.|.+.|.|.
T Consensus        67 i~~v~~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~~~------~~~~~p~~~~~~--~~~~~~~g~~v~l~C~~~g~p~  137 (212)
T 2yd6_A           67 IQPLRTPRDEAIYECVASNNVG-EISVSTRLTVLREDQ------IPRGFPTIDMGP--QLKVVERTRTATMLCAASGNPD  137 (212)
T ss_dssp             ECSCCTTTTCEEEEEEEEETTE-EEEEEEEEEEECGGG------CCTTCCEEEECC--CCEEEETTSCEEEEEEEECSSC
T ss_pred             EeccCCCCCCeEEEEEEEcCCC-cEEEEEEEEEeccCc------cCCCcceeecCC--cceeEecCCCEEEEEEecCCCC
Confidence            4567 59999999999999987 455666777642110      001236666655  4567888999999999999999


Q ss_pred             CeEEEEeCCeeeEecccC-CCC-------CCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         80 PSIMWRREGGEMITNSFN-NTV-------PPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~-~~~-------~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +.+.|++ ++..+..... ...       ...+.+.    .+...+.....|.+..
T Consensus       138 p~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~L~i~----~~~~~d~G~Y~C~a~N  188 (212)
T 2yd6_A          138 PEITWFK-DFLPVDTSNNNGRIKQLRSESIGALQIE----QSEESDQGKYECVATN  188 (212)
T ss_dssp             CEEEEEE-TTEEC------CCEEEEEETTEEEEEEC----SCCGGGCEEEEEEEEE
T ss_pred             CeEEEEE-CCccccCcCCCceEEEEecCCeEEEEEc----CCCcccCEEEEEEEEC
Confidence            9999999 5665543210 000       0111111    2345677889999763

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.34  E-value=1.2e-11  Score=81.19  Aligned_cols=116  Identities=16%  Similarity=0.281  Sum_probs=70.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccce---eEEee-----cCCCCeeEeCCCCCceEeecCCeEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSK---LYIYT-----SSMPPDILDYPTSSDIMVREGSNVSMRC   72 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~---~~~~~-----~~~~p~~~~~~~~~~~~~~~g~~~~l~C   72 (151)
                      |.+++++|+|.|+|.|.|+.   ......+.+.......   ...+.     ...+|.|...+   ...+.+|+.+.|.|
T Consensus        65 I~~v~~~D~G~Y~C~a~Ng~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~---~~~v~~g~~v~l~C  138 (207)
T 3rbs_A           65 MEKLQDEDEGTYTFQLQDGK---ATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL---SWEVTGECNVLLKC  138 (207)
T ss_dssp             ESCCCGGGCEEEEEEEEETT---EEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE---EEEEETTTEEEEEE
T ss_pred             ECCCChhhCEEEEEEEECCC---eEEEEEEEEEccchhhhcccccccccccccCCCCceEecC---CcEEcCCCcEEEEE
Confidence            57889999999999999932   2233333221000000   00000     01367776644   36788999999999


Q ss_pred             eecCC-CCCeEEEEeCCeeeEecccCCCCCC---eeeeCCceeEeecCCcEEEEeeecc
Q psy16421         73 AASGS-PPPSIMWRREGGEMITNSFNNTVPP---IVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        73 ~~~g~-~~~~~~W~~~~~~~~~~~~~~~~~p---~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      .+.|. |.|.+.|++ +++.+....+.....   .+.+.    .+...+....+|.+..
T Consensus       139 ~v~g~~P~p~i~W~k-~g~~l~~~~~~~~~~~~~~L~I~----~v~~~D~G~Y~C~a~N  192 (207)
T 3rbs_A          139 KVANIKKETHIVWYK-DEREISVDEKHDFKDGICTLLIT----EFSKKDAGIYEVILKD  192 (207)
T ss_dssp             EEESCCTTCEEEEEE-TTEEECCCCCCCCSSEEEEEEET----TCCGGGCEEEEEEEEE
T ss_pred             EEeCCCCCCEEEEEE-CCEECCCCCceEcCCCEEEEEEC----CCCcccCEEEEEEEEc
Confidence            99998 899999999 677765432111110   12221    2456788899998864

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.34  E-value=2.5e-11  Score=77.94  Aligned_cols=109  Identities=17%  Similarity=0.232  Sum_probs=71.2

Q ss_pred             CccccccCCeEEEEEEEcCCCC-CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP-SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++++|+|.|+|.+.|..+. ..+..+.|.|.          ....+|.+...+   ...+.+|+.+.|.|.+.+. +
T Consensus        56 i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~----------~~~~~p~i~~~p---~~~v~~G~~v~l~C~~~~~-~  121 (184)
T 2gi7_A           56 IPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVAT----------GVFAKPSLSAQP---GPAVSSGGDVTLQCQTRYG-F  121 (184)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEE----------SSSCCCEEEEEC---CCSSCCTTCEEEEEECSSC-C
T ss_pred             ECcCChhhCceEEEEEEcCCCccCCCCCEEEEec----------CcCCCCEEEeCC---CceecCCCcEEEEEEcCCC-C
Confidence            5689999999999999998752 34555666663          112456665544   2456789999999998775 4


Q ss_pred             CeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         80 PSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +.+.|++ ++..+....   .............+...+.....|.+..
T Consensus       122 ~~~~w~k-~g~~~~~~~---~~~~~~~~L~i~~v~~~D~G~Y~C~a~n  165 (184)
T 2gi7_A          122 DQFALYK-EGDPAPYKN---PERWYRASFPIITVTAAHSGTYRCYSFS  165 (184)
T ss_dssp             CEEEEEE-CCCCTTSCC---CCEEEEESSSEEEETTCCSEEEEEEEEC
T ss_pred             cEEEEEE-CCCcCccee---cCCCceEEEEEccCCccCCeEEEEEEEe
Confidence            6999999 554432100   0000111223335667888999999865

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.33  E-value=6.7e-12  Score=88.90  Aligned_cols=76  Identities=24%  Similarity=0.515  Sum_probs=59.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++++|+|.|+|.|.|..| ..+..+.|.|.             .+|.+...+  ....+.+|+.+.|.|.+.|.|.+
T Consensus        67 i~~v~~~D~G~Y~C~a~n~~g-~~~~~~~l~V~-------------~~P~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~  130 (389)
T 2jll_A           67 IKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIE-------------YAPKFISNQ--TIYYSWEGNPINISCDVKSNPPA  130 (389)
T ss_dssp             EESCCGGGCEEEEEEEECSSC-EEEEEEEEEEE-------------EEEEECCSC--CEEEECTTCCEEEEECEEEESCC
T ss_pred             EcccChhhCEEEEEEEEeCCC-CcceEEEEEEE-------------eCCEEecCc--ceEEeccCCEEEEEEEEEecCCC
Confidence            568899999999999999988 45666676664             456665543  33467889999999999999999


Q ss_pred             eEEEEeCCeeeEe
Q psy16421         81 SIMWRREGGEMIT   93 (151)
Q Consensus        81 ~~~W~~~~~~~~~   93 (151)
                      .+.|++ +++.+.
T Consensus       131 ~i~W~~-~g~~l~  142 (389)
T 2jll_A          131 SIHWRR-DKLVLP  142 (389)
T ss_dssp             EEEEEE-TTEESS
T ss_pred             eEEEEE-CCccCC
Confidence            999999 565554

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.33  E-value=2.7e-11  Score=78.50  Aligned_cols=110  Identities=16%  Similarity=0.307  Sum_probs=66.4

Q ss_pred             CccccccCCeEEEEEEEcCCCCCC----ccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeee-c
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSV----SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA-S   75 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~----~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~   75 (151)
                      |.+++.+|+|.|+|.+.|..+...    ...+.|.|...          ...|.+...      ....|+.+.|.|.+ .
T Consensus        69 I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~----------~~~p~~~~~------~~~~g~~~~l~C~~~~  132 (201)
T 1dr9_A           69 ILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKAD----------FPTPSISDF------EIPTSNIRRIICSTSG  132 (201)
T ss_dssp             ECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECC----------CCCCEEEEE------ECSSTTEEEEEEEEEE
T ss_pred             EecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCC----------CCCCceEec------cCCCCCeEEEEEecCC
Confidence            578999999999999999876433    23455555311          122333221      12348899999999 4


Q ss_pred             CCCCCeEEEEeCCeeeEecccC--CCCCC-eeeeCCceeEeecCCcEEEEeeecc
Q psy16421         76 GSPPPSIMWRREGGEMITNSFN--NTVPP-IVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        76 g~~~~~~~W~~~~~~~~~~~~~--~~~~p-~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      |.|.|.+.|++ +++.+.....  ..... .+........+...+....+|.+..
T Consensus       133 g~P~p~i~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n  186 (201)
T 1dr9_A          133 GFPEPHLSWLE-NGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKY  186 (201)
T ss_dssp             ESSCEEEEEEE-SSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEE
T ss_pred             ccCCCEEEEEE-CCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEec
Confidence            89999999999 5666553211  00000 0000001223445678899999873

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.33  E-value=3.2e-11  Score=76.71  Aligned_cols=92  Identities=15%  Similarity=0.159  Sum_probs=65.7

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCe-EEEEeCCeeeEecccC----------------------------
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPS-IMWRREGGEMITNSFN----------------------------   97 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~-~~W~~~~~~~~~~~~~----------------------------   97 (151)
                      .+|.+...+  ....+.+|+++.|.|.+.+.+.+. +.|++ ++..+.....                            
T Consensus         6 ~~p~i~~~p--~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~s~~~   82 (175)
T 1fnl_A            6 PKAVVFLEP--QWYSVLEKDSVTLKCQGAYSPEDNSTQWFH-NESLISSQASSYFIDAATVNDSGEYRCQTNLSTLSDPV   82 (175)
T ss_dssp             CCCEEEEES--CCSEEETTCCEEEEEECCCBTTBCCCEEEE-TTEEEESSCSEEEESSCCGGGCEEEEEECSSSCCCCCE
T ss_pred             CCCEEEEcC--CceeeeCCCcEEEEeeCCCCCCCcceEEEE-CCEEccCCceEEEEeCCCcccCEEEEEEeeCCcccccE
Confidence            467776666  456889999999999999887665 78999 5655543321                            


Q ss_pred             ---CCCCCeeeeCCceeEeecCCcEEEEeeecccCCC-eeEEEcCCcee
Q psy16421         98 ---NTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKS-VNYWTREKGDM  142 (151)
Q Consensus        98 ---~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~k~~~~~  142 (151)
                         +..++.+.. .....+.+|+.+.|.|.+.+.|++ .+.|+|+|..+
T Consensus        83 ~l~V~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~  130 (175)
T 1fnl_A           83 QLEVHIGWLLLQ-APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDR  130 (175)
T ss_dssp             EEEEECSSEEEE-CSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEE
T ss_pred             EEEEeCCCceee-CCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEc
Confidence               111222222 233567899999999999987665 89999998765

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.32  E-value=2.6e-11  Score=79.28  Aligned_cols=92  Identities=14%  Similarity=0.153  Sum_probs=66.3

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCe-EEEEeCCeeeEecccC----------------------------
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPS-IMWRREGGEMITNSFN----------------------------   97 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~-~~W~~~~~~~~~~~~~----------------------------   97 (151)
                      .+|.+...+  ....+.+|+++.|.|.+.+.+.+. +.|++ +++.+.....                            
T Consensus         6 p~p~i~~~p--~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k-~g~~l~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~s~~~   82 (204)
T 3sgj_C            6 PKAVVFLEP--QWYRVLEKDSVTLKCQGAYSPEDQSTQWFH-NESLISSQASSYFIDAATVDDSGEYRCQTQLSTLSDPV   82 (204)
T ss_dssp             CBCEEEEES--CCSEEETTCCEEEEEECCSSSSCCCEEEEE-TTEEESCCSSEEEESSCCGGGCEEEEEEETTSBCCCCE
T ss_pred             CCCeEEEcC--CCeEEECCCCEEEEEcCCCCCCCcEEEEEE-CCEEcccCccEEEEecccccCCEEEEEEeCCCcccccE
Confidence            456666655  446888999999999999988765 99999 5665543321                            


Q ss_pred             ---CCCCCeeeeCCceeEeecCCcEEEEeeeccc-CCCeeEEEcCCcee
Q psy16421         98 ---NTVPPIVKIPSQLIGAHEGQQLVLECISEAY-PKSVNYWTREKGDM  142 (151)
Q Consensus        98 ---~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~k~~~~~  142 (151)
                         +..+|.+...+. ..+.+|+++.|.|.+.+. |.+.+.|+|+|..+
T Consensus        83 ~l~V~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~  130 (204)
T 3sgj_C           83 QLEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGR  130 (204)
T ss_dssp             EEEEECSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEE
T ss_pred             EEEEecCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEe
Confidence               122344433333 567899999999999765 55789999998765

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.32  E-value=2.1e-11  Score=77.88  Aligned_cols=96  Identities=15%  Similarity=0.194  Sum_probs=65.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCC-CccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPS-VSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++.+|+|.|+|.+.|..|.. ....+.|.|..          ....|.+          ...+..+.|.|.+.|.|.
T Consensus        65 I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~----------~~~~p~i----------~~~~~~v~L~C~~~g~p~  124 (176)
T 1hng_A           65 IKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILE----------MVSKPMI----------YWECSNATLTCEVLEGTD  124 (176)
T ss_dssp             ESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEEC----------CCCCCEE----------EEETTTTEEEEECSSCSS
T ss_pred             EcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeC----------CCCCCEE----------EecCCcEEEEEEecCCCC
Confidence            57899999999999999998843 24455665531          0112222          223456999999999999


Q ss_pred             CeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         80 PSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      |.+.|++ +++.+.....    ..+.      .+...+.....|.+..
T Consensus       125 p~i~W~~-~g~~l~~~~~----~~i~------~~~~~d~G~Y~C~a~N  161 (176)
T 1hng_A          125 VELKLYQ-GKEHLRSLRQ----KTMS------YQWTNLRAPFKCKAVN  161 (176)
T ss_dssp             CEEEEEE-TTEEEEEESS----SEEE------EECSCCSSCEEEEEEE
T ss_pred             cEEEEEE-CCEECCCCCc----EEEE------EEEccCCeEEEEEEEe
Confidence            9999999 6777654321    1222      3457788889999864

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.31  E-value=7e-12  Score=81.19  Aligned_cols=108  Identities=16%  Similarity=0.262  Sum_probs=61.9

Q ss_pred             CccccccCCeEEEEEEEcCCCC-CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP-SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++.+|+|.|+|.+.|..+. ..+..+.|.|..          ...+|.+...+   ...+.+|+.+.|.|.+.+.| 
T Consensus        62 i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~----------~~~~p~i~~~~---~~~v~~G~~v~L~C~~~~~p-  127 (196)
T 2d3v_A           62 IPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTG----------FYNKPTLSALP---SPVVTSGENVTLQCGSRLRF-  127 (196)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEEC----------SSCCCEEEC--------------CEEEEEESSCC-
T ss_pred             eccCChhHCeEEEEEEeCCCCcCCcCccEEEEecC----------CCCCCeEEccC---CccccCCCcEEEEEEcCCCC-
Confidence            5689999999999999998763 235566776641          12356665443   24678899999999999988 


Q ss_pred             CeEEEEeCCeeeEecccC----CC-C--CCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         80 PSIMWRREGGEMITNSFN----NT-V--PPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~----~~-~--~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +.+.|++ +++.+.....    .. .  ...+.+.    .+...+.....|.+..
T Consensus       128 ~~~~W~k-~g~~~~~~~~~~~~~~~~~~~~~L~I~----~v~~~D~G~Y~C~a~n  177 (196)
T 2d3v_A          128 DRFILTE-EGDHKLSWTLDSQLTPSGQFQALFPVG----PVTPSHRWMLRCYGSR  177 (196)
T ss_dssp             SEEEEEE-C---CCEEEEECEECTTSCEEEEEECC----CCBTTBCEEEEEEEEE
T ss_pred             CEEEEEc-cCCcccccccccccccCCCceeEEEee----ecCcccCeeEEEEEEc
Confidence            8999999 5544321100    00 0  0122221    2456788899999864

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.31  E-value=8e-12  Score=79.94  Aligned_cols=109  Identities=22%  Similarity=0.401  Sum_probs=68.6

Q ss_pred             CccccccCCeEEEEEEEcCCCCC-CccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPS-VSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++.+|+|.|+|.+.+..+.. ....+.+.+.             .+|.+..........+.+|+.+.|.|.+.+.|.
T Consensus        61 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~-------------~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~  127 (189)
T 2v5t_A           61 ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN-------------VPPAISMPQKSFNATAERGEEMTFSCRASGSPE  127 (189)
T ss_dssp             ETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEE-------------EEEEEECSCCEEEEETTSCCCEEEECEEEEESC
T ss_pred             EeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEec-------------CCCCcccccccccccccCCCcEEEEEEEccCCC
Confidence            56889999999999999987532 1233334332             345554433212345678999999999999999


Q ss_pred             CeEEEEeCCeeeEecccCC---CCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         80 PSIMWRREGGEMITNSFNN---TVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +.+.|++ ++..+......   .....+.+.    .+...+.....|.+..
T Consensus       128 ~~v~W~~-~g~~~~~~~~~~~~~~~~~L~i~----~~~~~d~G~Y~C~a~n  173 (189)
T 2v5t_A          128 PAISWFR-NGKLIEENEKYILKGSNTELTVR----NIINSDGGPYVCRATN  173 (189)
T ss_dssp             CEEEEEE-TTEECCCSSSEEEETTTTEEEEC----SCCGGGCEEEEEEEEE
T ss_pred             CeEEEEE-CCEECcCCCcEEEecCCCEEEEc----CCChhhCeeEEEEEEe
Confidence            9999999 56655432210   001122222    1335667889999864

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.31  E-value=8.8e-12  Score=84.95  Aligned_cols=95  Identities=17%  Similarity=0.235  Sum_probs=68.3

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccC-----------------------------
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN-----------------------------   97 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~-----------------------------   97 (151)
                      .+|.+...+  ....+.+|+.+.|.|.+.+.|. .+.|++.++..+....+                             
T Consensus         3 ~~p~v~~~~--~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~   79 (291)
T 2wim_A            3 ALLQVTISL--SKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQA   79 (291)
T ss_dssp             CCCEEEESC--SEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCceEEEec--cceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEE
Confidence            456777766  6788999999999999998764 89999855544322111                             


Q ss_pred             ---------------CCCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         98 ---------------NTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        98 ---------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                                     +..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+..
T Consensus        80 ~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~  141 (291)
T 2wim_A           80 TDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTT  141 (291)
T ss_dssp             ECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CB
T ss_pred             ecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccc
Confidence                           12344444455666789999999999999999999999999876654

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.30  E-value=8.5e-12  Score=81.17  Aligned_cols=107  Identities=17%  Similarity=0.373  Sum_probs=68.6

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeee-cCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA-SGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~~~   79 (151)
                      |.+++.+|+|.|+|.+.|..+ .....+.|.|.             .+|.+...+  ....+.+|+.+.|.|.+ .+.|.
T Consensus        88 i~~v~~~D~G~Y~C~~~~~~~-~~~~~~~l~V~-------------~~p~~~~~~--~~~~~~~g~~v~l~C~~~~g~p~  151 (214)
T 3jz7_A           88 VTNLQLSDIGTYQCKVKKAPG-VANKKFLLTVL-------------VKPSGTRCF--VDGSEEIGNDFKLKCEPKEGSLP  151 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEE-------------CCCBSCEEE--EESCCBTTCCEEEEEECSBCCSS
T ss_pred             EccCChhhCeEEEEEEEeCCC-ccccEEEEEEE-------------cCCCCceee--eecceecCCcEEEEecCCCCCCC
Confidence            568999999999999999877 44556666664             344432222  12336789999999999 89999


Q ss_pred             CeEEEEeCCee-eEecccC-CCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         80 PSIMWRREGGE-MITNSFN-NTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        80 ~~~~W~~~~~~-~~~~~~~-~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +.+.|+++++. .+..... ......+.+..    +...+.....|.+..
T Consensus       152 ~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~----~~~~d~G~Y~C~a~N  197 (214)
T 3jz7_A          152 LQFEWQKLSDSQTMPTPWLAEMTSPVISVKN----ASSEYSGTYSCTVQN  197 (214)
T ss_dssp             CEEEEEECSTTCCCCGGGGGGTTSSEEEECS----CCGGGCEEEEEEEEC
T ss_pred             CEEEEEECCCCCccCccceeccCCCEEEEec----CCHHHCEEEEEEEEc
Confidence            99999994332 2211110 01111333322    345677889999864

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.29  E-value=1e-11  Score=80.10  Aligned_cols=85  Identities=20%  Similarity=0.292  Sum_probs=64.3

Q ss_pred             CceEeecCCeEEEEee-ecCCCC-CeEEEEeCCeeeEecc--c--------C----------------------------
Q psy16421         58 SDIMVREGSNVSMRCA-ASGSPP-PSIMWRREGGEMITNS--F--------N----------------------------   97 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~-~~g~~~-~~~~W~~~~~~~~~~~--~--------~----------------------------   97 (151)
                      ..+.+.+|+.+.|.|. +.+.|. +.+.|+++ +..+...  .        .                            
T Consensus        16 ~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   94 (201)
T 3s97_C           16 PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLN-EFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSV   94 (201)
T ss_dssp             CCEEEETTCCEEECCCCCSEESSCCEEEEEES-STTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEE
T ss_pred             ceEEEECCCCEEEeccccccCCCceEEEEEEC-CceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcch
Confidence            5678899999999999 888888 99999994 4333210  0        0                            


Q ss_pred             ---------------CCCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421         98 ---------------NTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus        98 ---------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                                     ...+|.+........+.+|+.+.|.|.+.|.|.|.+.|++++..+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~  155 (201)
T 3s97_C           95 FSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMP  155 (201)
T ss_dssp             ECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCC
T ss_pred             hhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCC
Confidence                           0123445555556778999999999999999999999999977554

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.29  E-value=8e-12  Score=81.34  Aligned_cols=108  Identities=26%  Similarity=0.445  Sum_probs=72.0

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeee-cCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA-SGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~~~   79 (151)
                      |.+++.+|+|.|+|.+.|..+...+..+.|.|..            .++.+...+  ....+.+|+.+.|.|.+ .+.|.
T Consensus        76 i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~------------~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~~p~  141 (212)
T 2v9r_A           76 HGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAI------------LRDDFRQNP--SDVMVAVGEPAVMECQPPRGHPE  141 (212)
T ss_dssp             CCSSCCCSCEEEEEEEEETTEEEECCCEEEEECE------------ECSSCSBCC--CCEEEETTSCEEEECBCCCEESC
T ss_pred             ecCCCcccCeEEEEEEECCCCceeecceEEEEEe------------ccccceeCC--CceEecCCCcEEEEEecCCCCCC
Confidence            3567899999999999998874445566666641            233343333  45778899999999998 88999


Q ss_pred             CeEEEEeCCeeeEecccCC--CCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         80 PSIMWRREGGEMITNSFNN--TVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +.+.|++ ++..+......  .....+.+.    .+...+.....|.+..
T Consensus       142 ~~v~W~~-~~~~l~~~~~~~~~~~~~L~i~----~~~~~d~G~Y~C~a~N  186 (212)
T 2v9r_A          142 PTISWKK-DGSPLDDKDERITIRGGKLMIT----YTRKSDAGKYVCVGTN  186 (212)
T ss_dssp             CEEEEEE-TTEEECTTSTTEEEETTEEEES----SCCGGGCEEEEEEEEE
T ss_pred             CEEEEEE-CCccCCCCcceEEccCCeEEEe----eCCHhhCeeEEEEEec
Confidence            9999999 56666532210  001122222    1345677789999764

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.29  E-value=7e-11  Score=76.76  Aligned_cols=107  Identities=13%  Similarity=0.185  Sum_probs=69.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.+..+......+.|.|.          .....|.+....  ..  +.+|+.+.|.|.+.+.| |
T Consensus        75 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~----------~~~~~p~i~~~~--~~--~~~g~~v~l~C~~~~~p-p  139 (208)
T 3r4d_A           75 FQMITMKDMGVYTLDMTDENYRRTQATVRFHVH----------QPVTQPFLQVTN--TT--VKELDSVTLTCLSNDIG-A  139 (208)
T ss_dssp             ECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE----------CCCCCCEEEESC--SS--CCTTCCEEEEEECSCTT-C
T ss_pred             EccccccCCeEEEEEEEcccCceeEEEEEEEec----------cCCCCCEEecCC--ce--EeeCCCEEEEEECCCCC-C
Confidence            568899999999999999864345555566653          112335555543  22  77899999999999865 8


Q ss_pred             eEEEEeCCeeeEecccCC---CCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         81 SIMWRREGGEMITNSFNN---TVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      .+.|++ ++..+......   .....+.+.    .+...+.....|.+..
T Consensus       140 ~i~W~~-~g~~l~~~~~~~~~~~~~~L~i~----~v~~~d~G~Y~C~a~N  184 (208)
T 3r4d_A          140 NIQWLF-NSQSLQLTERMTLSQNNSILRID----PIKREDAGEYQCEISN  184 (208)
T ss_dssp             EEEEEE-TTEECCCCSSEEEETTTTEEEES----SCCGGGCEEEEEEEEC
T ss_pred             ceEEEE-CCEeCCCCCCeEEcCCCCEEEEe----ccCHHhCeEEEEEEec
Confidence            999999 56665432210   001222222    1345677889999864

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.28  E-value=6e-12  Score=82.44  Aligned_cols=112  Identities=22%  Similarity=0.427  Sum_probs=72.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeee-cCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA-SGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~~~   79 (151)
                      |.+++.+|+|.|+|.+.|..+...+..+.|.|..            .+|.+...+  ....+.+|+.+.|.|.+ .+.|.
T Consensus        73 i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~------------~~~~~~~~~--~~~~~~~g~~v~l~C~~~~g~p~  138 (217)
T 2vr9_A           73 MQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV------------LRDDFRVEP--KDTRVAKGETALLECGPPKGIPE  138 (217)
T ss_dssp             CBSSSCBCCEEEEEEEEETTEEEECCCEEEEECE------------ECCSCSBCC--CCEEECTTSCEEECCBCCCEESC
T ss_pred             eccCCcccCceEEEEEecCCCccccccceEEEEE------------eCCCcEECC--CccEEcCCCeEEEEEECCCCCCC
Confidence            5678999999999999998875445556665531            234444444  46778899999999998 88999


Q ss_pred             CeEEEEeCCeeeEecccCCC--CCCeeee-CCcee---EeecCCcEEEEeeecc
Q psy16421         80 PSIMWRREGGEMITNSFNNT--VPPIVKI-PSQLI---GAHEGQQLVLECISEA  127 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~~~--~~p~~~~-~~~~~---~~~~g~~~~l~C~~~g  127 (151)
                      +.+.|++ ++..+.......  ....+.. .....   .+...+.....|.+..
T Consensus       139 ~~v~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N  191 (217)
T 2vr9_A          139 PTLIWIK-DGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQN  191 (217)
T ss_dssp             CEEEEEE-TTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEE
T ss_pred             CeEEEEE-CCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEc
Confidence            9999999 566665322100  0111111 11111   2345677889999863

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.28  E-value=2.8e-11  Score=78.38  Aligned_cols=109  Identities=17%  Similarity=0.312  Sum_probs=69.0

Q ss_pred             CccccccCCeEEEEEEEcCC-C-CCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGV-P-PSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSP   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~-~-~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~   78 (151)
                      |.+++++|+|.|+|.+.|.. + ...+..+.|.|..          ...+|.+...+   ...+.+|+.+.|.|.+.+. 
T Consensus        62 i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~----------~~~~p~i~~~~---~~~v~~G~~v~L~C~~~~~-  127 (198)
T 1ugn_A           62 IPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTG----------AYIKPTLSAQP---SPVVNSGGNVTLQCDSQVA-  127 (198)
T ss_dssp             ESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEEC----------SSCCCEEEEES---CSEEETTCCEEEEEECSSC-
T ss_pred             ECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcc----------cccCCccccCC---ccccCCCCcEEEEEecCCC-
Confidence            56899999999999999986 4 2345566776641          12345555433   3578899999999999987 


Q ss_pred             CCeEEEEeCCeeeEecccC--CCC-----CCeeeeCCceeEeecCCcEEEEeeeccc
Q psy16421         79 PPSIMWRREGGEMITNSFN--NTV-----PPIVKIPSQLIGAHEGQQLVLECISEAY  128 (151)
Q Consensus        79 ~~~~~W~~~~~~~~~~~~~--~~~-----~p~~~~~~~~~~~~~g~~~~l~C~~~g~  128 (151)
                      .+.+.|++ ++..+.....  ...     ...|.+.    .+...+.....|.+...
T Consensus       128 ~~~v~W~k-~g~~~~~~~~~~~~~~~~~~~~~L~i~----~v~~~D~G~Y~C~a~n~  179 (198)
T 1ugn_A          128 FDGFILCK-EGEDEHPQCLNSQPHARGSSRAIFSVG----PVSPSRRWWYRCYAYDS  179 (198)
T ss_dssp             CSEEEEEE-C------CEEEC------CCEEEEEEC----CCCTTSCEEEEEEEECT
T ss_pred             CcEEEEEE-CCCccCCccccccccCCCcceeEEEec----ccCcccCeEEEEEEEeC
Confidence            78999999 5554321110  000     0122222    24567888999998753

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.28  E-value=6.9e-12  Score=80.90  Aligned_cols=112  Identities=22%  Similarity=0.304  Sum_probs=70.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|..+ ..+..+.|.|....       . ...|.+...+  ....+.+|+.+.|.|.+.|.|.|
T Consensus        66 i~~~~~~d~G~Y~C~~~n~~g-~~~~~~~l~V~~~p-------~-~~~~~~~~~~--~~~~~~~g~~~~l~C~~~g~p~p  134 (197)
T 2j8h_A           66 IASVTDDDATVYQVRATNQGG-SVSGTASLEVEVPA-------K-IHLPKTLEGM--GAVHALRGEVVSIKIPFSGKPDP  134 (197)
T ss_dssp             ECSCCGGGCSEEEEEEEETTE-EEEEEEEEEEEEEE-------E-ECCSSCBTTB--EEEEEETTCCCEEEEEEEEESCC
T ss_pred             ECcCCHHhCEEEEEEEEECCC-ceeEEEEEEEcCCC-------c-CCCCcccccc--CeEEEeCCCEEEEEEEEEecCCC
Confidence            568899999999999999877 45566666664210       0 0112211111  34567789999999999999999


Q ss_pred             eEEEEeCCeeeEecccCCC-----CCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         81 SIMWRREGGEMITNSFNNT-----VPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~~~-----~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      .+.|++ +++.+.......     ....+.+..   .+...+.....|.+..
T Consensus       135 ~i~W~~-~~~~~~~~~~~~~~~~~~~~~L~i~~---~~~~~d~G~Y~C~a~N  182 (197)
T 2j8h_A          135 VITWQK-GQDLIDNNGHYQVIVTRSFTSLVFPN---GVERKDAGFYVVCAKN  182 (197)
T ss_dssp             EEEEEE-SSCEECSSSSCEEEECSSEEEEECTT---CCCGGGCEEEEEEEEE
T ss_pred             cEEEEE-CCEEeecCCCEEEEEcCCceEEEEeC---CCCcccCEeEEEEEEe
Confidence            999999 566655322100     000111111   0344667789999864

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.28  E-value=1.8e-11  Score=84.02  Aligned_cols=79  Identities=27%  Similarity=0.396  Sum_probs=55.8

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|..| ..+..+.|.|....       . ...|.....+  ....+.+|+.+.|.|.+.|.|.+
T Consensus        66 i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~p-------~-~~~~~~~~~~--~~~~~~~g~~~~l~C~~~g~p~p  134 (305)
T 2nzi_A           66 IASVTDDDATVYQVRATNQGG-SVSGTASLEVEVPA-------K-IHLPKTLEGM--GAVHALRGEVVSIKIPFSGKPDP  134 (305)
T ss_dssp             ESSCCGGGCSEEEEEEEETTE-EEEEEEEEEECEEE-------E-ECCCHHHHSS--CCEEEETTCCEEEEEEEEEESCC
T ss_pred             EccCChhhCeEEEEEEEcCCC-CccceEEEEEecCC-------c-cCCCcccccc--ccEEecCCCEEEEEEEECCCCCC
Confidence            568899999999999999987 45566666664100       0 0112112222  35677889999999999999999


Q ss_pred             eEEEEeCCeee
Q psy16421         81 SIMWRREGGEM   91 (151)
Q Consensus        81 ~~~W~~~~~~~   91 (151)
                      .+.|++ ++..
T Consensus       135 ~i~W~~-~~~~  144 (305)
T 2nzi_A          135 VITWQK-GQDL  144 (305)
T ss_dssp             EEEEEE-SSSB
T ss_pred             EEEEEE-CCEE
Confidence            999999 4444

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.28  E-value=8.9e-12  Score=82.31  Aligned_cols=108  Identities=19%  Similarity=0.312  Sum_probs=61.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~~   79 (151)
                      |.+++.+|+|.|+|.|.|..+ .....+.+.+.             .++.  ...  ....+.+|+.+.|.|.+.| .|.
T Consensus        87 I~~v~~~D~G~Y~C~a~n~~~-~~~~~v~~~~~-------------~~~~--~~~--~~~~~~~g~~v~l~c~~~g~~P~  148 (226)
T 4f80_A           87 IHNVTASDSGKYLCYFQDGDF-YEKALVELKVA-------------ALGS--DLH--VDVKGYKDGGIHLECRSTGWYPQ  148 (226)
T ss_dssp             ESSCCGGGCEEEEEEEEETTE-EEEEEEEEEEE-------------BCCC--CCE--EEEEEEETTEEEEEEEEEEEBSC
T ss_pred             EeeCchHHCeeEEEEEECCCc-EEEEEEEEeec-------------ccee--ccc--ceeeeccCCceeeEEEeccCCCC
Confidence            578999999999999999866 22222232221             1111  111  2356678999999999877 699


Q ss_pred             CeEEEEeCCeeeEecccCCC---CCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         80 PSIMWRREGGEMITNSFNNT---VPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      |.+.|+++++..+.......   ..-.+.+ .....+...+....+|.+..
T Consensus       149 p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v-~s~l~v~~~d~G~YtC~a~N  198 (226)
T 4f80_A          149 PQIQWSNNKGENIPTVEAPVVADGVGLYAV-AASVIMRGSSGEGVSCTIRS  198 (226)
T ss_dssp             CEEEEECTTSCBCCCEECCCEECTTSCEEE-EEEEEECC----CEEEEEEE
T ss_pred             CEEEEEECCceEcCCCceEEEECCCCcEEE-EEEEEechhcCcEEEEEEEe
Confidence            99999996665543222100   0000000 01123445677789999874

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.27  E-value=4e-11  Score=77.91  Aligned_cols=107  Identities=21%  Similarity=0.337  Sum_probs=68.0

Q ss_pred             CccccccCCeEEEEEEEcCCCC-CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEee-ecCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP-SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCA-ASGSP   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~-~~g~~   78 (151)
                      |.+++.+|+|.|+|.+.|..|. ..+..+.|.|.             .+|.+...+  ....+.+|+.+.|.|. +.+.|
T Consensus        69 i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~-------------~~p~~~~~~--~~~~~~~g~~~~l~C~~~~~~p  133 (212)
T 1f97_A           69 FSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL-------------VPPSKPTIS--VPSSVTIGNRAVLTCSEHDGSP  133 (212)
T ss_dssp             ESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEE-------------BCCCCCEEE--CCSEEETTSCEEEEEECSCCBS
T ss_pred             EcccCcccCeEEEEEEEccCCCcccEEEEEEEEE-------------cCCCCcccC--CccccCCCCeEEEEEEcccCcC
Confidence            5688999999999999998662 12334455443             344443322  2356788999999999 79999


Q ss_pred             CCeEEEEeCCee-eEecccCC------------CCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         79 PPSIMWRREGGE-MITNSFNN------------TVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        79 ~~~~~W~~~~~~-~~~~~~~~------------~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      .+.+.|++ +++ .+......            .....+.+.    .+...+.....|.+..
T Consensus       134 ~~~i~W~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~----~~~~~d~G~Y~C~a~n  190 (212)
T 1f97_A          134 PSEYSWFK-DGISMLTADAKKTRAFMNSSFTIDPKSGDLIFD----PVTAFDSGEYYCQAQN  190 (212)
T ss_dssp             CCEEEEEE-TTEESBC-----CBSCSSSCEEECTTTCCEEES----SCCGGGCEEEEEEEEC
T ss_pred             CCEEEEEe-CCcccccccccccccccCceeEecCCCceEEEE----ecChhhCcEEEEEEcc
Confidence            99999999 555 54432210            001112211    2345677889999864

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.27  E-value=1.7e-11  Score=77.98  Aligned_cols=93  Identities=16%  Similarity=0.201  Sum_probs=62.4

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC-eEEEEeCCeeeEecccC----------------------------
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP-SIMWRREGGEMITNSFN----------------------------   97 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~-~~~W~~~~~~~~~~~~~----------------------------   97 (151)
                      .+|.+...+  ..+.+.+|+++.|.|.+.+.+.+ .+.|++ ++..+.....                            
T Consensus         3 ~~P~i~~~p--~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~s~~~   79 (176)
T 1f2q_A            3 QKPKVSLNP--PWNRIFKGENVTLTCNGNNFFEVSSTKWFH-NGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPV   79 (176)
T ss_dssp             -CCCCEEES--SCSEEETTCCEEEECCTTCC----CCEEEE-TTEECSCCSSEEEECSCCGGGCEEEEEECTTSSCCCCE
T ss_pred             CCCEEEcCC--CCcceecCCcEEEEEeCCCCCCcceEEEEE-CCeECCCCceEEEEeccceecCEEEEEEcCCccccccE
Confidence            466666666  45788999999999999888775 699999 5554432221                            


Q ss_pred             ---CCCCCeeeeCCceeEeecCCcEEEEeeec-ccCCCeeEEEcCCceec
Q psy16421         98 ---NTVPPIVKIPSQLIGAHEGQQLVLECISE-AYPKSVNYWTREKGDMI  143 (151)
Q Consensus        98 ---~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~k~~~~~~  143 (151)
                         +..++.+. ......+.+|+.+.|.|.+. +.|.+.+.|+|+|..+.
T Consensus        80 ~l~V~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~  128 (176)
T 1f2q_A           80 YLEVFSDWLLL-QASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK  128 (176)
T ss_dssp             EEEEECSSEEE-EESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECC
T ss_pred             EEEEeCcceee-cCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEe
Confidence               11122222 22334678999999999995 67777899999977653

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.27  E-value=4.7e-11  Score=79.28  Aligned_cols=87  Identities=21%  Similarity=0.374  Sum_probs=64.3

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccC----------------------------------------
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN----------------------------------------   97 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~----------------------------------------   97 (151)
                      ..+.+.+|+++.|.|.+.+.|.+.+.|++ +++.+.....                                        
T Consensus        23 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~  101 (241)
T 3grw_A           23 KLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQT  101 (241)
T ss_dssp             CEEEEETTSEEEEECCEECSSCCEEEEEE-TTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             cceEEcCCCeEEEEEEecCCCCceeEEEE-CCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEEE
Confidence            45788899999999999999999999999 5555432210                                        


Q ss_pred             ----C----CCCCeee-eCCceeEeecCCcEEEEeeecccCCCeeEEEc----CCceeccC
Q psy16421         98 ----N----TVPPIVK-IPSQLIGAHEGQQLVLECISEAYPKSVNYWTR----EKGDMIAN  145 (151)
Q Consensus        98 ----~----~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k----~~~~~~~~  145 (151)
                          +    ..+|.+. ..+....+.+|+.+.|.|.+.|.|.+.+.|++    +|..+..+
T Consensus       102 ~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~  162 (241)
T 3grw_A          102 YTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPD  162 (241)
T ss_dssp             EEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTT
T ss_pred             EEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCC
Confidence                0    1123332 23556678899999999999999999999999    76555433

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.27  E-value=8.2e-12  Score=81.62  Aligned_cols=81  Identities=16%  Similarity=0.347  Sum_probs=57.4

Q ss_pred             CccccccCCeEEEEEEEcCCC--CCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC-
Q psy16421          1 MTEVSREHMGAYLCIASNGVP--PSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS-   77 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-   77 (151)
                      |.+++.+|+|.|.|.+.|..+  ......+.|.|..         ....+|.+...+  ....+.+|+.+.|.|.+.+. 
T Consensus        74 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~---------~~~~~P~i~~~~--~~~~~~~g~~v~l~C~~~g~~  142 (213)
T 3mj8_L           74 ISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLG---------QPNAAPSVTLFP--PSSEELKTNQATLVCMINGFY  142 (213)
T ss_dssp             ESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEEC---------SCCBCCEEEEEC--CCHHHHTTTEEEEEEEEEEEB
T ss_pred             ECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeC---------CCCCCCeEEccC--CCcccccCCcEEEEEEeecee
Confidence            578999999999999999876  2334556666641         112466666544  23444579999999999885 


Q ss_pred             CC-CeEEEEeCCeeeEe
Q psy16421         78 PP-PSIMWRREGGEMIT   93 (151)
Q Consensus        78 ~~-~~~~W~~~~~~~~~   93 (151)
                      |+ +.+.|++ +++.+.
T Consensus       143 p~~~~v~W~k-~g~~l~  158 (213)
T 3mj8_L          143 PADVAVTWEA-DGTPIT  158 (213)
T ss_dssp             SSCCEEEEEE-TTEEEC
T ss_pred             CCCeEEEEEc-CCcccC
Confidence            33 4999999 666664

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.27  E-value=1.2e-11  Score=79.55  Aligned_cols=78  Identities=26%  Similarity=0.475  Sum_probs=56.4

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeC-CCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDY-PTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++.+|+|.|+|.+.|..+ .....+.|.|.             .+|.+... +......+.+|+.+.|.|.+.+.|.
T Consensus        67 i~~~~~~d~G~Y~C~~~n~~~-~~~~~~~l~v~-------------~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~  132 (197)
T 3lcy_A           67 VMTEEQEDEGVYTCIATNEVG-EVETSSKLLLQ-------------ATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPV  132 (197)
T ss_dssp             EECCSGGGCEEEEEEEECSSC-EEEEEEEEEEE-------------EEEEECTTSCCCSEEEEETTSCEEEEEEEEEESC
T ss_pred             EecCCccCCEEEEEEEECCCC-ceeEEEEEEEE-------------cCCCCCCCccCCcceeecCCCeEEEEEEEeeeeC
Confidence            467899999999999999887 44555566554             22222211 1113456778999999999999999


Q ss_pred             CeEEEEeCCeeeEe
Q psy16421         80 PSIMWRREGGEMIT   93 (151)
Q Consensus        80 ~~~~W~~~~~~~~~   93 (151)
                      |.+.|++ ++..+.
T Consensus       133 p~v~W~~-~~~~~~  145 (197)
T 3lcy_A          133 PAMTWFH-GQKLLQ  145 (197)
T ss_dssp             CEEEEEE-TTEECC
T ss_pred             CeeEEeE-CCEECC
Confidence            9999999 566654

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.26  E-value=1.1e-11  Score=80.46  Aligned_cols=108  Identities=18%  Similarity=0.275  Sum_probs=66.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|..+ ..+..+.|.|...          ...|.+..      ..+.+|+.+.|.|.+.|.|.|
T Consensus        71 I~~v~~~D~G~Y~C~~~~~~~-~~~~~~~l~V~~~----------~~~p~~~~------~~~~~g~~v~l~C~~~g~P~p  133 (202)
T 3bp6_B           71 IPSVQVRDSGQYRCLVICGAA-WDYKYLTVKVKAS----------YMRIDTRI------LEVPGTGEVQLTCQARGYPLA  133 (202)
T ss_dssp             ECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEEBC----------CCCEEEEE------EECTTTCCEEEEEEEEEBSCC
T ss_pred             ECCCCHHHCcEEEEEEEeCCC-cceEEEEEEecCC----------CCcccEEE------EecCCCCeEEEEEEccccCCc
Confidence            568999999999999999877 3455666666411          12222221      134579999999999999999


Q ss_pred             eEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         81 SIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      .+.|+++ +..+.........-.+.. .....+...+.....|.+..
T Consensus       134 ~v~W~~~-~~~~~~~~~~~~~~~~~~-~~i~~v~~~d~G~Y~C~a~N  178 (202)
T 3bp6_B          134 EVSWQNV-SVPANTSHIRTPEGLYQV-TSVLRLKPQPSRNFSCMFWN  178 (202)
T ss_dssp             EEEETTC-CSCCEEEEEECTTSCEEE-EEEEEECCCTTCCEEEEEEE
T ss_pred             eEEEEeC-CCCccCceeeCCCCCEEE-EEEEEEEcCCCCEEEEEEEc
Confidence            9999984 433221100000000100 01123445677889999864

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.26  E-value=1.5e-11  Score=82.04  Aligned_cols=80  Identities=19%  Similarity=0.392  Sum_probs=56.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCC----ccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSV----SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~----~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g   76 (151)
                      |.+++.+|+|.|+|.+.|..+...    +..+.|.|..          ...+|.+.... ...+.+.+|+.+.|.|.+.+
T Consensus        94 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~----------~~~~~~~~~~~-~~~~~v~~g~~v~L~C~~~g  162 (250)
T 2fbo_J           94 LTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTG----------HTPSNNVHVST-AEVVQVDEGNDITMTCPCTD  162 (250)
T ss_dssp             ECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETT----------TSCCSCCEECC-CSEEECCTTCCEEECCCEES
T ss_pred             EeeCChhhCeEEEEEeccCccCCcccccceeEEEEEec----------cCCCCeEEEec-CceEEecCCCcEEEEEEecC
Confidence            578999999999999999876322    2245555431          11234444332 14567778999999999999


Q ss_pred             CCCCeEEEEeCCeeeE
Q psy16421         77 SPPPSIMWRREGGEMI   92 (151)
Q Consensus        77 ~~~~~~~W~~~~~~~~   92 (151)
                      .|.|.+.|++ +++.+
T Consensus       163 ~p~p~v~W~k-~~~~~  177 (250)
T 2fbo_J          163 CANANVTWYT-GPTFF  177 (250)
T ss_dssp             CTTCEEEEEE-EEECS
T ss_pred             CCCCeeEEEe-CCCcc
Confidence            9999999999 55544

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.26  E-value=1.7e-11  Score=80.87  Aligned_cols=81  Identities=21%  Similarity=0.417  Sum_probs=59.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeE-EEEeee-cCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNV-SMRCAA-SGSP   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~-~l~C~~-~g~~   78 (151)
                      |.+++.+|+|.|+|.+.+..+......+.|.|..          ....|.+...+  ....+.+|+.+ .|.|.+ .+.|
T Consensus        81 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~----------~p~~~~~~~~~--~~~~~~~g~~~~~l~C~~~~~~p  148 (231)
T 2pet_A           81 LAEAQVGDERDYVCVVRAGAAGTAEATARLNVFA----------KPEATEVSPNK--GTLSVMEDSAQEIATCNSRNGNP  148 (231)
T ss_dssp             ESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEB----------CCCCCEEEECC--SSCCTTCCSEEEEEEEEEEEEBS
T ss_pred             EcccCcccCceEEEEEEecCCCceEEEEEEEEEe----------cCCCcEEecCC--cceeecCCCceEEEEEEeECccc
Confidence            5689999999999999998722455666666641          12335555544  44566788887 999999 8899


Q ss_pred             CCeEEEEeCCeeeEec
Q psy16421         79 PPSIMWRREGGEMITN   94 (151)
Q Consensus        79 ~~~~~W~~~~~~~~~~   94 (151)
                      .|.+.|++ ++..+..
T Consensus       149 ~p~i~W~~-~~~~~~~  163 (231)
T 2pet_A          149 APKITWYR-NGQRLEV  163 (231)
T ss_dssp             CCEEEEEE-TTEECCC
T ss_pred             CCEEEEEE-CCccCcc
Confidence            99999999 5666553

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.26  E-value=2.3e-11  Score=80.38  Aligned_cols=109  Identities=16%  Similarity=0.235  Sum_probs=69.7

Q ss_pred             CccccccCCeEEEEEEEcCCCC-CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP-SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++.+|+|.|+|.+.|..+. ..+..+.|.|.          ....+|.+...+   ...+.+|+++.|.|.+.+.+.
T Consensus        68 I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~----------~~~~~P~i~~~p---~~~v~~G~~v~L~C~~~~~~~  134 (218)
T 1uct_A           68 IDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVT----------GLYGKPFLSADR---GLVLMPGENISLTCSSAHIPF  134 (218)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEE----------CSSCCCEEEESS---CSEECTTCCCEEEEECSSSCC
T ss_pred             EcccccccCEEEEEEEEcCCCceeecCCEEEEEc----------CcccCCEEEeCC---CCccCCCCCEEEEEeCCCCCC
Confidence            5688999999999999997652 23455666653          112456665544   347789999999997677788


Q ss_pred             CeEEEEeCCeeeEecccC-CCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         80 PSIMWRREGGEMITNSFN-NTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +.+.|+| ++..+..... ......|.+.    .+...+.....|.+..
T Consensus       135 ~~~~W~k-~g~~~~~~~~~~~~~~~L~I~----~v~~~D~G~Y~C~a~n  178 (218)
T 1uct_A          135 DRFSLAK-EGELSLPQHQSGEHPANFSLG----PVDLNVSGIYRCYGWY  178 (218)
T ss_dssp             SEEEEEE-TTCSSCCSEEECSSSEEEECC----SCCGGGCEEEEEEEEC
T ss_pred             CEEEEEE-CCCcccccccCCCccCEEEEc----cCCcccCEEEEEEEEc
Confidence            8999999 4543321000 0011122221    2445778889999863

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.25  E-value=4.5e-11  Score=81.34  Aligned_cols=111  Identities=17%  Similarity=0.281  Sum_probs=73.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~~   79 (151)
                      |.+++.+|+|.|+|.+.+......+..+.|.|..         ....+|.+...+  ....+.+|+.+.|.|.+.+ .|.
T Consensus       148 i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~---------~~~~~p~i~~~~--~~~~~~~g~~~~l~C~~~~~~p~  216 (289)
T 3ejj_X          148 IRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNR---------VHPEPPQIKLEP--SKLVRIRGEAAQIVCSATNAEVG  216 (289)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEES---------SCCCCCEEEEES--SSEECCSSSCEEEEEEEEESSSC
T ss_pred             EeecccccCEEEEEEEEeCCCccccccEEEEEEE---------CCCCCCeEEecC--CceEEEeCCcEEEEEEeCCCCCc
Confidence            4678999999999999954333556667777641         122567777666  4566778999999999988 789


Q ss_pred             CeEEEEeCCeeeEecccCC---CC----CCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         80 PSIMWRREGGEMITNSFNN---TV----PPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~~---~~----~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +.+.|++ ++..+......   ..    ...+.+.    .+...+.....|.+..
T Consensus       217 ~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~----~v~~~d~G~Y~C~a~N  266 (289)
T 3ejj_X          217 FNVILKR-GDTKLEIPLNSDFQDNYYKKVRALSLN----AVDFQDAGIYSCVASN  266 (289)
T ss_dssp             CEEEEEE-TTEECCCCEEEEECSSSEEEEEEEEES----SCCSSSCEEEEEEEEC
T ss_pred             eEEEEEE-CCEEeeccCCcccccceEEeeEEEEEE----eecccCCEEEEEEEEc
Confidence            9999999 55554321100   00    0111211    2456778899999864

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.25  E-value=6e-11  Score=79.56  Aligned_cols=91  Identities=18%  Similarity=0.146  Sum_probs=65.9

Q ss_pred             CeeEeCCCCCceEeecCCeEEEEeeecCCCCC-eEEEEeCCeeeEecccC------------------------------
Q psy16421         49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPP-SIMWRREGGEMITNSFN------------------------------   97 (151)
Q Consensus        49 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~-~~~W~~~~~~~~~~~~~------------------------------   97 (151)
                      |.+...+  ....+.+|+.+.|.|.+.+.+.+ .+.|++ +++.+.....                              
T Consensus         2 P~i~~~p--~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~-~g~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~s~~~~l   78 (262)
T 3rjd_A            2 AVITLQP--PWVSVFQEETVTLHCEVLHLPGSSSTQWFL-NGTATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQL   78 (262)
T ss_dssp             CEEEESS--CCSEEETTCCEEEEEECSSCCCTTCEEEEE-TTEECSCCSSEEEESSCCGGGCEEEEEEESSSCCCCCEEE
T ss_pred             CeEecCC--CcEEeeCCCeEEEEEECCCCCCCceEEEEE-CCEEeeccCCeEEEecCCcccCeEEEEEEecCCccccEEE
Confidence            5566655  56788899999999999998877 999999 5665532211                              


Q ss_pred             -CCCCCeeeeCCceeEeecCCcEEEEeee-cccCCCeeEEEcCCceec
Q psy16421         98 -NTVPPIVKIPSQLIGAHEGQQLVLECIS-EAYPKSVNYWTREKGDMI  143 (151)
Q Consensus        98 -~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~k~~~~~~  143 (151)
                       +..++ +...+....+.+|+.+.|.|.+ .+.|.+.+.|+|+|..+.
T Consensus        79 ~v~~~~-~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~  125 (262)
T 3rjd_A           79 EIHRGW-LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFK  125 (262)
T ss_dssp             EEECSS-EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEE
T ss_pred             EEeccc-eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccc
Confidence             11122 2223334567899999999999 678888999999987653

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.25  E-value=3.1e-11  Score=78.62  Aligned_cols=119  Identities=15%  Similarity=0.263  Sum_probs=69.4

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEecccc--------ceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYF--------SKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRC   72 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~--------~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C   72 (151)
                      |.+++.+|+|.|+|.+.|..+ .....+.|.|.....        ... .+.....|.+.... +....+.+|+.+.|.|
T Consensus        63 i~~v~~~D~G~Y~C~~~n~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~-~~~~~v~~g~~~~l~C  139 (212)
T 2r15_A           63 INEPTPNDKGKYVMELFDGKT-GHQKTVDLSGQAYDEAYAEFQRLKQA-AIAEKNRARVLGGL-PDVVTIQEGKALNLTC  139 (212)
T ss_dssp             EESCCGGGCEEEEEEEECSSC-EEEEEEEECHHHHHHHHHHHHHHHHH-HHHHHHSCEEEEBC-CSEEEEETTCCEEEEE
T ss_pred             ECCCCcccCEEEEEEEecCCc-ceEEEEEEEEeeccchhhhccccCcc-cccccCCCcccccC-CCcEEEccCCeEEEEE
Confidence            568899999999999999776 333333333210000        000 00000133333322 1457888999999999


Q ss_pred             eecCCCCCeEEEEeCCeeeEecccCCC------CCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         73 AASGSPPPSIMWRREGGEMITNSFNNT------VPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        73 ~~~g~~~~~~~W~~~~~~~~~~~~~~~------~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      .+.|.|.|.+.|++ ++..+.......      ....+.+.    .+...+.....|.+..
T Consensus       140 ~~~g~p~p~v~W~~-~~~~~~~~~~~~~~~~~~~~~~L~i~----~~~~~d~G~Y~C~a~N  195 (212)
T 2r15_A          140 NVWGDPPPEVSWLK-NEKALAQTDHCNLKFEAGRTAYFTIN----GVSTADSGKYGLVVKN  195 (212)
T ss_dssp             EEECSSCCEEEEEE-TTEEECCCSSEEEEEETTTEEEEEES----SCCGGGCEEEEEEEEE
T ss_pred             EEcCCCCceEEEEE-CCeECccCCCEEEEEcCCCEEEEEEc----CcchHHCeEEEEEEEc
Confidence            99999999999999 566655322100      00012221    1345667789998864

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.25  E-value=2e-11  Score=79.35  Aligned_cols=85  Identities=25%  Similarity=0.383  Sum_probs=61.1

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEe----------c--ccC----------------------------
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMIT----------N--SFN----------------------------   97 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~----------~--~~~----------------------------   97 (151)
                      ..+.+.+|+.+.|.|.+.+.|.+.+.|+++ +..+.          .  ..+                            
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~C~~~~~   87 (212)
T 1f97_A            9 SDVQVPENESIKLTCTYSGFSSPRVEWKFV-QGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEE   87 (212)
T ss_dssp             SEEEEETTCCEEEECEEESCSSEEEEEEEE-ETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEET
T ss_pred             CCeEEEcCCCEEEEeEeCCCCCcEEEEEEC-CCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEEEEEEcc
Confidence            567888999999999999989999999994 43311          0  000                            


Q ss_pred             -------------CCCCCeeeeCCceeEeecCCcEEEEee-ecccCCCeeEEEcCCc-eec
Q psy16421         98 -------------NTVPPIVKIPSQLIGAHEGQQLVLECI-SEAYPKSVNYWTREKG-DMI  143 (151)
Q Consensus        98 -------------~~~~p~~~~~~~~~~~~~g~~~~l~C~-~~g~p~~~~~W~k~~~-~~~  143 (151)
                                   +..+|.+...+....+.+|+.+.|.|. +.|.|.|.+.|+|++. .+.
T Consensus        88 ~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~  148 (212)
T 1f97_A           88 GGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLT  148 (212)
T ss_dssp             TSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC
T ss_pred             CCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccc
Confidence                         112333222223346789999999999 7899999999999977 554

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.24  E-value=1.6e-10  Score=73.50  Aligned_cols=100  Identities=16%  Similarity=0.212  Sum_probs=66.8

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|..+   +..+.|.|.             .++.....+   ...+.+|+.+.|.|.+.+.+++
T Consensus        58 i~~~~~~d~G~Y~C~~~n~~~---s~~~~l~V~-------------~~~~~~~~~---~~~~~~g~~~~l~C~~~~~~~~  118 (175)
T 1fnl_A           58 IDAATVNDSGEYRCQTNLSTL---SDPVQLEVH-------------IGWLLLQAP---RWVFKEEDPIHLRCHSWKNTAL  118 (175)
T ss_dssp             ESSCCGGGCEEEEEECSSSCC---CCCEEEEEE-------------CSSEEEECS---CSEEETTCCEEEEEEECTTCCC
T ss_pred             EeCCCcccCEEEEEEeeCCcc---cccEEEEEe-------------CCCceeeCC---CceecCCCCEEEEEEcCCCCCc
Confidence            568899999999999988543   456666664             233333332   3567889999999999887654


Q ss_pred             -eEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         81 -SIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        81 -~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                       .+.|++ ++..+....   ....+.+.    .+...+.....|.+..
T Consensus       119 ~~~~W~k-~g~~~~~~~---~~~~L~i~----~v~~~d~G~Y~C~a~n  158 (175)
T 1fnl_A          119 HKVTYLQ-NGKDRKYFH---HNSDFHIP----KATLKDSGSYFCRGLV  158 (175)
T ss_dssp             EEEEEEE-TTEEEEEEE---ECCCEEES----SCCGGGCEEEEEEEEE
T ss_pred             eEEEEEE-CCeEccCCC---CCCEEEEc----ccChhhCeEEEEEEEc
Confidence             999999 566554211   11223322    1345677789999864

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.24  E-value=1e-11  Score=81.15  Aligned_cols=81  Identities=12%  Similarity=0.242  Sum_probs=57.0

Q ss_pred             CccccccCCeEEEEEEEcCCC-CCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC--
Q psy16421          1 MTEVSREHMGAYLCIASNGVP-PSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS--   77 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~--   77 (151)
                      |.+++.+|+|.|.|.+.|..+ ......+.|.|..         ....+|.+...+  ....+.+|+.+.|.|.+.|.  
T Consensus        72 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~---------~~~~~P~v~~~~--~~~~~~~g~~v~l~C~~~g~~p  140 (211)
T 3tv3_L           72 VSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLG---------QPKAAPSVTLFP--PSSEELQANKATLVCLISDFYP  140 (211)
T ss_dssp             EESCCGGGCEEEEEEEEETTTEEEECCCEEEEECC---------SCCBCCEEEEEC--CCHHHHHTTCEEEEEEEEEEBS
T ss_pred             ECCCChhHCEEEEEEEecCCCceeECCCceEEEeC---------CCCcCCeeEecC--CchhhhcCCCeEEEEEeeeecC
Confidence            578999999999999999876 2344455666531         112466666544  23344479999999999884  


Q ss_pred             CCCeEEEEeCCeeeEe
Q psy16421         78 PPPSIMWRREGGEMIT   93 (151)
Q Consensus        78 ~~~~~~W~~~~~~~~~   93 (151)
                      +.+.+.|++ +++.+.
T Consensus       141 ~~~~v~W~k-~g~~l~  155 (211)
T 3tv3_L          141 GAVTVAWKA-DSSPVK  155 (211)
T ss_dssp             SCCEEEEEE-TTEEEC
T ss_pred             CCeEEEEEE-CCeecC
Confidence            357899999 666654

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.24  E-value=1.3e-10  Score=75.88  Aligned_cols=73  Identities=16%  Similarity=0.324  Sum_probs=54.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC-CC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS-PP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-~~   79 (151)
                      |.+++.+|+|.|+|.+.|.   ..+..+.|.|.             .+|.+...+   ...+.+|+.+.|.|.+.+. |.
T Consensus        58 i~~v~~~D~G~Y~C~a~n~---~~s~~~~l~V~-------------~~p~~~~~~---~~~v~~G~~v~L~C~~~~~~p~  118 (204)
T 3sgj_C           58 IDAATVDDSGEYRCQTQLS---TLSDPVQLEVH-------------IGWLLLQAP---RWVFKEEDPIHLRCHSWKNTAL  118 (204)
T ss_dssp             ESSCCGGGCEEEEEEETTS---BCCCCEEEEEE-------------CSSEEEECS---CSEEETTCCEEEEEEEGGGCCC
T ss_pred             EecccccCCEEEEEEeCCC---cccccEEEEEe-------------cCceEecCC---ceeEeCCCcEEEEEEecCCCCC
Confidence            5689999999999999874   34556666664             445555544   3678899999999999654 56


Q ss_pred             CeEEEEeCCeeeEe
Q psy16421         80 PSIMWRREGGEMIT   93 (151)
Q Consensus        80 ~~~~W~~~~~~~~~   93 (151)
                      +.+.|++ +++.+.
T Consensus       119 ~~v~W~k-~g~~~~  131 (204)
T 3sgj_C          119 HKVTYLQ-NGKGRK  131 (204)
T ss_dssp             EEEEEEE-TTEEEE
T ss_pred             ceEEEEE-CCcEee
Confidence            8899999 565553

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.24  E-value=1.3e-11  Score=80.63  Aligned_cols=81  Identities=15%  Similarity=0.251  Sum_probs=54.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCC-C
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSP-P   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~-~   79 (151)
                      |.+++.+|+|.|.|.+.|..+........|.|..         ....+|.+...+  ......+|+.+.|.|.+.+.+ .
T Consensus        77 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~---------~~~~~P~v~~~~--~~~~~~~g~~v~L~C~~~g~~p~  145 (212)
T 1q0x_L           77 ITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLG---------QPKSSPTVTLFP--PSSEELSTAKATLVCTITDFYPG  145 (212)
T ss_dssp             ESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC---------SCCBCCEEEEEC--CCHHHHTTTEEEEEEEEEEEBSS
T ss_pred             ECCCCccCCEEEEEEEecCchhhcCCCeEEEEec---------CCCCCCeeEEeC--CCHHHccCCcEEEEEEEEEEeCC
Confidence            5789999999999999998653233444555531         112466665533  223344688999999998744 3


Q ss_pred             C-eEEEEeCCeeeEe
Q psy16421         80 P-SIMWRREGGEMIT   93 (151)
Q Consensus        80 ~-~~~W~~~~~~~~~   93 (151)
                      + .+.|++ +++.+.
T Consensus       146 ~~~v~W~k-~g~~l~  159 (212)
T 1q0x_L          146 VVTVDWKV-DGTPVT  159 (212)
T ss_dssp             CCEEEEEE-TTEEEC
T ss_pred             CeEEEEEE-CCEeCC
Confidence            3 899999 666664

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.23  E-value=5e-11  Score=76.84  Aligned_cols=114  Identities=28%  Similarity=0.409  Sum_probs=70.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCc--cceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVS--KRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSP   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~   78 (151)
                      |.+++.+|+|.|+|.+.|..+....  ..+.+.+....      .....+|.+...+  ....+.+|+.+.|.|.+.+.|
T Consensus        70 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p  141 (201)
T 3s97_C           70 IANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPER------TTKPYPADIVVQF--KDVYALMGQNVTLECFALGNP  141 (201)
T ss_dssp             ESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCS------SCCCEEEEEEEEC--CCEEEETTCCEEEEEEEEEES
T ss_pred             ECcCCcccCeEEEEEEEecCCCcchhhcccceeecccc------ccCCCCCceEecC--CceEEecCCcEEEEEEccCCC
Confidence            5688999999999999997653222  23333332110      0112345555554  367888999999999999999


Q ss_pred             CCeEEEEeCCeeeEecccC-CCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         79 PPSIMWRREGGEMITNSFN-NTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        79 ~~~~~W~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      .+.+.|++ ++..+..... ......+.+.    .+...+.....|.+..
T Consensus       142 ~p~v~W~~-~~~~~~~~~~~~~~~~~L~i~----~v~~~d~G~Y~C~a~n  186 (201)
T 3s97_C          142 VPDIRWRK-VLEPMPSTAEISTSGAVLKIF----NIQLEDEGIYECEAEN  186 (201)
T ss_dssp             CCEEEEEE-TTBCCCTTCEEETTTTEEEEC----SCCGGGCEEEEEEEEE
T ss_pred             CCceEEEe-CCCcCCCceeecCCCCEEEEc----cCChhhCEEEEEEEEe
Confidence            99999999 4544332110 0011122222    1345677889999864

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.23  E-value=8.9e-12  Score=81.34  Aligned_cols=75  Identities=21%  Similarity=0.289  Sum_probs=53.6

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCe-eEeCCCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPD-ILDYPTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++.+|+|.|.|.|.|..+ ..+..+.|.|.             .+|. +...+  . ..+.+|+.+.|.|.+.+.++
T Consensus        58 I~~v~~~D~G~Y~C~a~n~~~-~~~~~~~l~V~-------------~~p~~~~~~~--~-~~~~~G~~~~L~C~~~~~~p  120 (202)
T 1vca_A           58 MNPVSFGNEHSYLCTATCESR-KLEKGIQVEIY-------------SFPKDPEIHL--S-GPLEAGKPITVKCSVADVYP  120 (202)
T ss_dssp             ESSCCGGGCSEEEEEEEETTE-EEEEEEEEEEE-------------BCCSCCEEEE--S-SCEETTSCEEEEEEEEEEBS
T ss_pred             ECcCCHHHCEEEEEEEEECCc-eEeeEEEEEEE-------------eCCCCCEeCC--c-eEEcCCCCEEEEEEECCcCC
Confidence            578999999999999999876 45566676664             2222 22222  2 45778999999999987533


Q ss_pred             ---CeEEEEeCCeeeEe
Q psy16421         80 ---PSIMWRREGGEMIT   93 (151)
Q Consensus        80 ---~~~~W~~~~~~~~~   93 (151)
                         +.+.|++ +++.+.
T Consensus       121 ~~~~~i~W~k-~~~~l~  136 (202)
T 1vca_A          121 FDRLEIDLLK-GDHLMK  136 (202)
T ss_dssp             GGGEEEEEEE-TTEEEE
T ss_pred             CCCeEEEEEe-CCeECc
Confidence               3789999 566654

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.23  E-value=1.7e-11  Score=80.11  Aligned_cols=81  Identities=21%  Similarity=0.418  Sum_probs=56.0

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~~   79 (151)
                      |.+++.+|+|.|+|.+.|..+........|.|.          ....+|.+...+  ......+|+.+.|.|.+.| .|.
T Consensus        75 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~----------~~~~~p~v~~~~--~~~~~~~g~~~~l~C~~~g~~p~  142 (213)
T 3d9a_L           75 INSVETEDFGMYFCQQSNSWPYTFGGGTKLEIK----------RADAAPTVSIFP--PSSEQLTSGGASVVCFLNNFYPK  142 (213)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC----------CCCBCCEEEEEC--CCHHHHHTTEEEEEEEEEEEBSS
T ss_pred             ECCCChhhCEEEEEeeecCCcceeCCCEEEEEe----------cCCCCceeEeEC--CChhhcCCCcEEEEEEEeeecCC
Confidence            578999999999999999876433444566653          112356665533  2223447899999999977 565


Q ss_pred             C-eEEEEeCCeeeEec
Q psy16421         80 P-SIMWRREGGEMITN   94 (151)
Q Consensus        80 ~-~~~W~~~~~~~~~~   94 (151)
                      + .+.|++ +++.+..
T Consensus       143 ~~~v~W~k-~g~~~~~  157 (213)
T 3d9a_L          143 DINVKWKI-DGSERQN  157 (213)
T ss_dssp             CCEEEEEE-TTEEECT
T ss_pred             ceEEEEEc-CCCcCcc
Confidence            5 899999 6666653

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.23  E-value=4e-11  Score=77.63  Aligned_cols=89  Identities=17%  Similarity=0.181  Sum_probs=53.5

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEec-------ccC----------------------
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITN-------SFN----------------------   97 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~-------~~~----------------------   97 (151)
                      .+|.+...+  . ..+.+|+++.|.|.+.+.+. .+.|+++ +..+..       ...                      
T Consensus         4 ~~P~i~~~p--~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~-g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   78 (196)
T 2d3v_A            4 SKATLWAEP--G-SVISRGNSVTIRCQGTLEAQ-EYRLVKE-GSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYY   78 (196)
T ss_dssp             CBCEEEEES--C-SEEETTCCEEEEEECCTTCC-EEEEEET-TCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEeCC--C-CcccCCCeEEEEEeCCCCCc-EEEEEEC-CCCCCcccccccCCccccEEEeccCChhHCeEEEEEEe
Confidence            567777766  3 37889999999999988765 9999994 443321       000                      


Q ss_pred             ---------------C---CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421         98 ---------------N---TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus        98 ---------------~---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                                     +   ..+|.+...+ ...+.+|+++.|.|.+.+.| +.+.|+|+|..+
T Consensus        79 n~~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~  139 (196)
T 2d3v_A           79 SPAGWSEPSDPLELVVTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHK  139 (196)
T ss_dssp             ETTEECBCCCCEEEEEECSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---C
T ss_pred             CCCCcCCcCccEEEEecCCCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcc
Confidence                           0   0133443332 24678999999999999998 899999998755

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.23  E-value=2.5e-11  Score=78.53  Aligned_cols=108  Identities=15%  Similarity=0.242  Sum_probs=70.4

Q ss_pred             CccccccCCeEEEEEEEcCCC-CCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVP-PSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++.+|+|.|+|.+.|..+ ...+..+.|.|.          ....+|.+...+  . ..+.+|+++.|.|.+.+ +.
T Consensus        62 i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~----------~~~~~p~~~~~~--~-~~v~~G~~v~L~C~~~~-~~  127 (196)
T 3p2t_A           62 IPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMT----------GAYSKPTLSALP--S-PLVTSGKSVTLLCQSRS-PM  127 (196)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEE----------CSSCCCEEEEES--C-SEECTTCCEEEEEEEEE-EE
T ss_pred             eccCCcccCceEEEEEeCCCcccCCCccEEEEec----------CCCCCCEEEeCC--c-ceecCCCeEEEEEecCC-CC
Confidence            568899999999999999887 345666777663          112456666554  2 36789999999999987 45


Q ss_pred             CeEEEEeCCeeeEecccCC------CCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         80 PSIMWRREGGEMITNSFNN------TVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~~------~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +.+.|++ ++..+......      .....+.+    ..+...+.....|.+..
T Consensus       128 ~~~~w~k-~g~~~~~~~~~~~~~~~~~~~~L~i----~~v~~~d~G~Y~C~a~n  176 (196)
T 3p2t_A          128 DTFLLCK-ERAAHPLLCLRSEHGAQQHQAEFPM----SPVTSVHGGTYRCFSSH  176 (196)
T ss_dssp             EEEEEEE-TTCCCGGGSEEEEEEEEEEEEEEEE----CSCCGGGCEEEEEEEEC
T ss_pred             CEEEEEe-CCCcccceeecccccccCcceEEEe----CCCcccCCCeEEEEEEc
Confidence            6899999 45433211000      00011111    12456788899999864

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.23  E-value=1.4e-11  Score=80.52  Aligned_cols=80  Identities=15%  Similarity=0.347  Sum_probs=56.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC-
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP-   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~-   79 (151)
                      |.+++.+|+|.|.|.+.|..+........|.|.          ....+|.+...+  ....+..|+.+.|.|.+.+.++ 
T Consensus        75 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~----------~~~~~p~v~~~~--~~~~~~~~~~v~l~C~~~g~~p~  142 (213)
T 3r06_A           75 ISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIK----------RADAKPTVSIFP--PSSEQLGTGSATLVCFVNNFYPK  142 (213)
T ss_dssp             ESSCCGGGCSEEEEEECSSSSCEECCCEEEEEC----------CCCBCCEEEEEC--CCHHHHTTTEEEEEEEEEEEBSS
T ss_pred             ECCCCcccCEEEEEecccCCceEEcCCceEEEe----------ccCCCceeeeeC--CCceecCCCCcEEEEEEeeecCC
Confidence            578999999999999998765334445566652          123566665544  3344556888999999987554 


Q ss_pred             -CeEEEEeCCeeeEe
Q psy16421         80 -PSIMWRREGGEMIT   93 (151)
Q Consensus        80 -~~~~W~~~~~~~~~   93 (151)
                       +.+.|++ +++.+.
T Consensus       143 ~~~v~W~k-~g~~l~  156 (213)
T 3r06_A          143 DINVKWKV-DGSEKR  156 (213)
T ss_dssp             CEEEEEEE-TTEEEC
T ss_pred             ceEEEEEE-CCcccC
Confidence             4899999 666654

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.22  E-value=8.9e-11  Score=74.03  Aligned_cols=92  Identities=21%  Similarity=0.273  Sum_probs=63.8

Q ss_pred             CCeeEeCCCCCceEeecCCeEEEEeeecCCC-CCeEEEEeCCeeeEecccC-----------------------------
Q psy16421         48 PPDILDYPTSSDIMVREGSNVSMRCAASGSP-PPSIMWRREGGEMITNSFN-----------------------------   97 (151)
Q Consensus        48 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~-~~~~~W~~~~~~~~~~~~~-----------------------------   97 (151)
                      +|.+...+  ....+.+|+++.|.|.+.+.+ .+.+.|++ ++..+.....                             
T Consensus         4 ~p~i~~~p--~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~-~g~~~~~~~~~~~~~~~~~~d~G~Y~C~~~~~~~s~~~~   80 (170)
T 3ry4_A            4 KAVLKLEP--PWINVLQEDSVTLTCQGARSPESDSIQWFH-NGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVH   80 (170)
T ss_dssp             BCEEEEES--CCSEEETTCEEEEEEESCCCSSSSCEEEEE-TTEECTTCCSSEEEEECCGGGCEEEEEEETTSBCCCCEE
T ss_pred             CCEEEeCC--CCeEEECCCcEEEEEEecCCCCcceEEEEE-CCeEcccCccceEEEecccccCeEEEEEEeCCCceEeEE
Confidence            34555544  456788999999999998876 67899999 5655443221                             


Q ss_pred             --CCCCCeeeeCCceeEeecCCcEEEEeeec-ccCCCeeEEEcCCceec
Q psy16421         98 --NTVPPIVKIPSQLIGAHEGQQLVLECISE-AYPKSVNYWTREKGDMI  143 (151)
Q Consensus        98 --~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~k~~~~~~  143 (151)
                        +..++.+.. .....+.+|+.+.|.|.+. +.|.+.+.|+|+|..+.
T Consensus        81 l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~  128 (170)
T 3ry4_A           81 LTVLFEWLVLQ-TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQK  128 (170)
T ss_dssp             EEEECCSEEEE-CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEE
T ss_pred             EEEECCceEec-CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEcc
Confidence              112232222 2344678999999999995 56678899999977653

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.22  E-value=3e-11  Score=78.32  Aligned_cols=86  Identities=26%  Similarity=0.387  Sum_probs=62.3

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEe----------cc--cC----------------------------
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMIT----------NS--FN----------------------------   97 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~----------~~--~~----------------------------   97 (151)
                      ..+.+.+|+++.|.|.+.+.|.+.+.|+++ +..+.          ..  .+                            
T Consensus        12 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   90 (209)
T 1nbq_A           12 PEVRIPENNPVKLSCAYSGFSSPRVEWKFD-QGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEE   90 (209)
T ss_dssp             SBCCEETTCCCEEECEEESCSSEEEEEEEE-ETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEET
T ss_pred             CceEEEcCCCEEEEEEEeCCCCcEEEEEEc-CCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEEEEEEecC
Confidence            567788999999999999989999999994 33311          00  00                            


Q ss_pred             -------------CCCCCeeeeCCceeEeecCCcEEEEeee-cccCCCeeEEEcCCceecc
Q psy16421         98 -------------NTVPPIVKIPSQLIGAHEGQQLVLECIS-EAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        98 -------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~k~~~~~~~  144 (151)
                                   +..+|.+........+.+|+.+.|.|.+ .|.|.|.+.|+|++..+..
T Consensus        91 ~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~  151 (209)
T 1nbq_A           91 GGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPT  151 (209)
T ss_dssp             TSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCS
T ss_pred             CCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCC
Confidence                         1123333333334467899999999997 8999999999999876654

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.22  E-value=9.4e-11  Score=76.18  Aligned_cols=76  Identities=20%  Similarity=0.360  Sum_probs=54.9

Q ss_pred             CccccccCCeEEEEEEEcCCC----CCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC
Q psy16421          1 MTEVSREHMGAYLCIASNGVP----PSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g   76 (151)
                      |.+++++|+|.|+|.+.+...    ...+..+.|.|.          ....+|.+...+  . ..+.+|+++.|.|.+.+
T Consensus        67 I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~----------~~~~~p~i~~~p--~-~~v~~G~~v~L~C~~~~  133 (201)
T 1nkr_A           67 ISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVII----------GLYEKPSLSAQP--G-PTVLAGENVTLSCSSRS  133 (201)
T ss_dssp             ESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEE----------CSSCCCEEEEES--C-SEECTTCEEEEEEEESS
T ss_pred             eccCCcccCeEEEEeEecCCCCccccCCCCCEEEEee----------ccCCCCceecCC--C-CccCCCCeEEEEEeCCC
Confidence            568899999999999987531    234556677664          122456776655  2 46789999999999987


Q ss_pred             CCCCeEEEEeCCeee
Q psy16421         77 SPPPSIMWRREGGEM   91 (151)
Q Consensus        77 ~~~~~~~W~~~~~~~   91 (151)
                       +.+.+.|+| +++.
T Consensus       134 -~~~~~~w~k-~g~~  146 (201)
T 1nkr_A          134 -SYDMYHLSR-EGEA  146 (201)
T ss_dssp             -CCSEEEEEE-TTCS
T ss_pred             -CCceEEEEE-CCcc
Confidence             578899999 4443

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.22  E-value=1.4e-10  Score=85.46  Aligned_cols=77  Identities=18%  Similarity=0.374  Sum_probs=47.0

Q ss_pred             CccccccCCeEEEEEEEcCCC-----------C-CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeE
Q psy16421          1 MTEVSREHMGAYLCIASNGVP-----------P-SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNV   68 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~-----------~-~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~   68 (151)
                      |.+++.+|+|.|.|.+.+..+           . .......|.|..         ....+|.+..... ......+++.+
T Consensus        84 I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~---------~~~~~P~i~~~~~-~~~~~~~~~~v  153 (512)
T 1zvo_C           84 LRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSS---------APTKAPDVFPIIS-GCRHPKDNSPV  153 (512)
T ss_pred             ECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecc---------cCCcCCeEEeccC-CcccccCCCeE
Confidence            678999999999999988642           0 112344565531         0113454432110 11102246899


Q ss_pred             EEEeeecCC-CCC-eEEEEeC
Q psy16421         69 SMRCAASGS-PPP-SIMWRRE   87 (151)
Q Consensus        69 ~l~C~~~g~-~~~-~~~W~~~   87 (151)
                      .|.|.+.+. |.+ .+.|+++
T Consensus       154 ~L~C~~~g~~P~p~~v~W~~~  174 (512)
T 1zvo_C          154 VLACLITGYHPTSVTVTWYMG  174 (512)
T ss_pred             EEEEEEEeeecCceEEEEEcC
Confidence            999999885 655 8999984

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.22  E-value=2.9e-11  Score=78.45  Aligned_cols=78  Identities=26%  Similarity=0.503  Sum_probs=56.2

Q ss_pred             CccccccCCeEEEEEEEcCCCC-CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeee-cCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP-SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA-SGSP   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~~   78 (151)
                      |.+++.+|+|.|+|.+.|..+. ..+..+.|.|.             .+|.+....  ....+.+|+.+.|.|.+ .+.|
T Consensus        72 i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~-------------~~p~~~~~~--~~~~~~~g~~~~l~C~~~~~~p  136 (209)
T 1nbq_A           72 FKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL-------------VPPSKPTVN--IPSSATIGNRAVLTCSEQDGSP  136 (209)
T ss_dssp             CSCCCTTSCSEEEEEEEETTSSCEECCEEECCEE-------------BCCCCCCCC--CBSEEETTSCEEECCCCCSCBS
T ss_pred             EeeCCHHHCcEEEEEEecCCCCccceEEEEEEEe-------------cCCcCCCcc--cccceecCCEEEEEEeCCCCCC
Confidence            6789999999999999998652 22333444443             445444333  34567889999999996 8999


Q ss_pred             CCeEEEEeCCeeeEec
Q psy16421         79 PPSIMWRREGGEMITN   94 (151)
Q Consensus        79 ~~~~~W~~~~~~~~~~   94 (151)
                      .+.+.|++ ++..+..
T Consensus       137 ~~~v~W~~-~~~~~~~  151 (209)
T 1nbq_A          137 PSEYTWFK-DGIVMPT  151 (209)
T ss_dssp             CCEEEEEE-TTCCCCS
T ss_pred             CceeEEEE-CCeeCCC
Confidence            99999999 5555543

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.21  E-value=5.9e-11  Score=76.41  Aligned_cols=108  Identities=17%  Similarity=0.212  Sum_probs=68.7

Q ss_pred             CccccccCCeEEEEEEEcCCCC-CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP-SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++++|+|.|+|.+.|..+. ..+..+.|.|..          ...+|.+...+   ...+.+|+++.|.|.+.+ +.
T Consensus        61 I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~----------~~~~p~i~~~p---~~~v~~G~~v~L~C~~~~-~~  126 (188)
T 1oll_A           61 IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTE----------MYDTPTLSVHP---GPEVISGEKVTFYCRLDT-AT  126 (188)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEES----------CSCCCEEEEES---CSEEETTCEEEEEEECSS-SC
T ss_pred             eCcCCcccCeEEEEEecCCCCCCCCCCceEEEecc----------cCCCCeEEECC---CCccccCCEEEEEEEcCC-CC
Confidence            5689999999999999886542 335566666641          12356665544   346789999999999876 46


Q ss_pred             CeEEEEeCCeeeEecccC-CCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         80 PSIMWRREGGEMITNSFN-NTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +.+.|+++ +..+..... ......|.+    ..+...+.....|.+..
T Consensus       127 ~~~~w~k~-g~~~~~~~~~~~~~~~L~I----~~v~~~d~G~Y~C~a~n  170 (188)
T 1oll_A          127 SMFLLLKE-GRSSHVQRGYGKVQAEFPL----GPVTTAHRGTYRCFGSY  170 (188)
T ss_dssp             SEEEEEEE-SSSCEEEEEECSSEEEEEE----EECCGGGCEEEEEECEE
T ss_pred             CEEEEEEC-CccccccccCCCceeEEEE----CCCCcCCCcEEEEEEEc
Confidence            78999994 443321000 000111211    23456788899999764

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.21  E-value=1.6e-10  Score=73.52  Aligned_cols=100  Identities=18%  Similarity=0.216  Sum_probs=67.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeee-cCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA-SGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~~~   79 (151)
                      |.+++.+|+|.|+|.+.|..+   +..+.|.|.             .++.....+   ...+.+|+.+.|.|.+ .+.|.
T Consensus        55 i~~v~~~d~G~Y~C~~~~~~~---s~~~~l~V~-------------~~~~~~~~~---~~~~~~g~~~~l~C~~~~~~p~  115 (176)
T 1f2q_A           55 IVNAKFEDSGEYKCQHQQVNE---SEPVYLEVF-------------SDWLLLQAS---AEVVMEGQPLFLRCHGWRNWDV  115 (176)
T ss_dssp             ECSCCGGGCEEEEEECTTSSC---CCCEEEEEE-------------CSSEEEEES---CSEEETTSCEEEEEEEGGGCCE
T ss_pred             EeccceecCEEEEEEcCCccc---cccEEEEEe-------------CcceeecCC---cceeeCCCCEEEEEEecCCCCc
Confidence            568999999999999988543   455666653             333333322   3567799999999999 56777


Q ss_pred             CeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         80 PSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +.+.|++ +++.+...   .....+.+..    +...+.....|.+..
T Consensus       116 ~~~~W~~-~g~~~~~~---~~~~~L~i~~----v~~~d~G~Y~C~a~n  155 (176)
T 1f2q_A          116 YKVIYYK-DGEALKYW---YENHNISITN----ATVEDSGTYYCTGKV  155 (176)
T ss_dssp             EEEEEEE-TTEECCSC---CCSSEEEESS----CCGGGCEEEEEEEEE
T ss_pred             eEEEEEE-CCEEEeee---cCCCeEEECC----CCcccCEEEEEEEEe
Confidence            8999999 66665321   1122333332    345567789999864

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.21  E-value=6.7e-11  Score=77.83  Aligned_cols=85  Identities=18%  Similarity=0.338  Sum_probs=62.9

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccC----------------------------------------
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN----------------------------------------   97 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~----------------------------------------   97 (151)
                      ....+.+|+++.|.|.+.+.|.+.+.|++ +++.+.....                                        
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~  105 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT  105 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEE-TTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEE-CCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCccccc
Confidence            45678899999999999999999999999 5555432211                                        


Q ss_pred             ----C----CCCCeeee-CCceeEeecCCcEEEEeeecccCCCeeEEEc----CCceec
Q psy16421         98 ----N----TVPPIVKI-PSQLIGAHEGQQLVLECISEAYPKSVNYWTR----EKGDMI  143 (151)
Q Consensus        98 ----~----~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k----~~~~~~  143 (151)
                          +    ..+|.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|+|    +|..+.
T Consensus       106 ~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~  164 (231)
T 3ojm_B          106 YHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG  164 (231)
T ss_dssp             EEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBC
T ss_pred             EEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCcccc
Confidence                0    11223322 2456678899999999999999999999999    655443

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.20  E-value=2.6e-11  Score=79.14  Aligned_cols=80  Identities=18%  Similarity=0.329  Sum_probs=54.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~~   79 (151)
                      |.+++.+|+|.|.|.+.|..+........|.|..          ...+|.+...+  ......+|+.+.|.|.+.| .|.
T Consensus        74 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~----------~~~~P~v~~~~--~~~~~~~g~~v~l~C~~~g~~p~  141 (210)
T 1lk3_L           74 IDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKR----------ADAAPTVSIFP--PSTEQLATGGASVVCLMNNFYPR  141 (210)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC----------CCBCCEEEEEC--CCHHHHTTTEEEEEEEEEEEBSS
T ss_pred             ECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcC----------CCcCCeEEEEC--CchhhccCCcEEEEEEEEeEeCC
Confidence            5789999999999999998763333344565531          12356665533  1223447999999999987 454


Q ss_pred             C-eEEEEeCCeeeEe
Q psy16421         80 P-SIMWRREGGEMIT   93 (151)
Q Consensus        80 ~-~~~W~~~~~~~~~   93 (151)
                      + .+.|++ +++.+.
T Consensus       142 ~~~v~W~k-~g~~~~  155 (210)
T 1lk3_L          142 DISVKWKI-DGTERR  155 (210)
T ss_dssp             CCEEEEEE-TTEECC
T ss_pred             ceEEEEEe-CCccCC
Confidence            3 899999 666654

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.19  E-value=7.7e-11  Score=79.88  Aligned_cols=60  Identities=23%  Similarity=0.378  Sum_probs=26.0

Q ss_pred             ccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEE
Q psy16421          4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIM   83 (151)
Q Consensus         4 v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~   83 (151)
                      ..++|.+.|.|++.+..|... ..                   ....+...+  ..+.+.+|+++.|.|.+.+ +.+.+.
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~-~~-------------------~~~~v~~~p--~~v~v~~G~~v~L~C~~~~-~~~~v~   59 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSG-GG-------------------GGMKVIQTP--RYLVKGQGQKAKMRCIPEK-GHPVVF   59 (270)
T ss_dssp             ---------------------------------------------CCCEEEC--SEEEEETTSCEEEEEECCT-TCCEEE
T ss_pred             chhhhHHHHHHHHhccCCccc-cc-------------------cceeEEeCC--CeEEEcCCCCEEEEEEecC-CCceEE
Confidence            468899999999998876321 11                   112222223  4577889999999999866 778999


Q ss_pred             EEe
Q psy16421         84 WRR   86 (151)
Q Consensus        84 W~~   86 (151)
                      |++
T Consensus        60 W~k   62 (270)
T 3qib_D           60 WYQ   62 (270)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            997

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.18  E-value=3.7e-11  Score=82.72  Aligned_cols=118  Identities=12%  Similarity=0.144  Sum_probs=42.9

Q ss_pred             eEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC-C--eEEEEe
Q psy16421         10 GAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP-P--SIMWRR   86 (151)
Q Consensus        10 G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~-~--~~~W~~   86 (151)
                      |.|.|++... +......+.|.|..          ....+.+..    ....+.+|+.+.|.|.+.+..+ .  .+.|++
T Consensus        61 ~~y~C~~~~~-~~~~~~~v~l~V~~----------~P~~v~I~~----~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~k  125 (291)
T 1mq8_A           61 SQPMCYSNCP-DGQSTAKTFLTVYW----------TPERVELAP----LPSWQPVGKNLTLRCQVEGGAPRANLTVVLLR  125 (291)
T ss_dssp             CCCEEEEECS-SCEEEEECEEEECB----------CCSCCCBCC----CCSBCCSSCCCEEEEEECCCBSTTTEEEEEES
T ss_pred             CeEEEEEEcC-CccEEEEEEEEEec----------CCCCCEEec----CCccccCCCCEEEEEEecCccCCCCcEEEEEE
Confidence            5799999644 33455555666641          112222222    2234778999999999877443 3  589999


Q ss_pred             CCeeeEecccC---------------------------CC----C--------CC-eeee--CC-c------eeEeecCC
Q psy16421         87 EGGEMITNSFN---------------------------NT----V--------PP-IVKI--PS-Q------LIGAHEGQ  117 (151)
Q Consensus        87 ~~~~~~~~~~~---------------------------~~----~--------~p-~~~~--~~-~------~~~~~~g~  117 (151)
                       +++.+.....                           ..    .        .+ .+.+  .+ .      ...+.+|+
T Consensus       126 -g~~~l~~~~~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~  204 (291)
T 1mq8_A          126 -GEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDT  204 (291)
T ss_dssp             -SSSEEEEEECCBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC--------------------
T ss_pred             -CCEEeecccCCCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCC
Confidence             5555442110                           00    0        00 0100  11 0      11367899


Q ss_pred             cEEEEeeecccCCC---eeEEEcCCceec
Q psy16421        118 QLVLECISEAYPKS---VNYWTREKGDMI  143 (151)
Q Consensus       118 ~~~l~C~~~g~p~~---~~~W~k~~~~~~  143 (151)
                      .+.|+|.+.|.|++   .++|.++|+.+.
T Consensus       205 ~v~l~C~~~g~~P~~~~~v~w~~~g~~l~  233 (291)
T 1mq8_A          205 QGTVVCSLDGLFPVSEAQVHLALGDQRLN  233 (291)
T ss_dssp             -----------------------------
T ss_pred             eEEEEEEcCCCCCCcccEEEEEECCEecC
Confidence            99999999997654   599999877664

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.18  E-value=4.1e-10  Score=70.92  Aligned_cols=99  Identities=20%  Similarity=0.393  Sum_probs=66.3

Q ss_pred             ccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeee-cCCCCC
Q psy16421          2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA-SGSPPP   80 (151)
Q Consensus         2 ~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~~~~   80 (151)
                      .+++.+|+|.|+|.+.|..   .+..+.|.|.             .++.+...+   ...+.+|+.+.|.|.+ .+.|.+
T Consensus        56 ~~~~~~d~G~Y~C~~~~~~---~s~~~~l~v~-------------~~~~~~~~~---~~~~~~g~~~~l~C~~~~~~p~~  116 (170)
T 3ry4_A           56 FKANNNDSGEYTCQTGQTS---LSDPVHLTVL-------------FEWLVLQTP---HLEFQEGETIMLRCHSWKDKPLV  116 (170)
T ss_dssp             EECCGGGCEEEEEEETTSB---CCCCEEEEEE-------------CCSEEEECS---CSEECTTCCEEEEEEEGGGCCEE
T ss_pred             EecccccCeEEEEEEeCCC---ceEeEEEEEE-------------CCceEecCC---CceeecCCeEEEEEECCCCCCCc
Confidence            4688999999999998753   3445666664             344444433   4567789999999998 556678


Q ss_pred             eEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         81 SIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      .+.|++ ++..+....   ....+.+..    +...+.....|.+..
T Consensus       117 ~~~W~~-~g~~~~~~~---~~~~L~i~~----v~~~d~G~Y~C~a~n  155 (170)
T 3ry4_A          117 KVTFFQ-NGKSQKFSH---LDPTFSIPQ----ANHSHSGDYHCTGNI  155 (170)
T ss_dssp             EEEEEE-TTEEEEEES---SCCEEEESS----CCGGGCEEEEEEEEE
T ss_pred             eEEEEE-CCeEccccC---CCCeEEEEe----ccccCCEEEEEEEEe
Confidence            999999 566654311   122333322    345677789999853

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.18  E-value=4.4e-11  Score=81.62  Aligned_cols=78  Identities=15%  Similarity=0.224  Sum_probs=60.4

Q ss_pred             CccccccCCe-EEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSREHMG-AYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++.+|+| .|+|.|.|..+...+..+.|.|.         .....+|.+...+  ....+.+|+.+.|.|.+.|.|.
T Consensus       149 i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~---------~~~~~~P~i~~~~--~~~~v~~G~~v~l~C~~~g~p~  217 (290)
T 2o26_X          149 IKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVR---------EAIKAIPVVSVPE--TSHLLKKGDTFTVVCTIKDVST  217 (290)
T ss_dssp             EESCCGGGTTCEEEEEEEETTEEEECCCEEEEEE---------CCCCSCCEEECSC--SBCCCCTTCCEEEEEEEEESST
T ss_pred             EecccHHHCCCEEEEEEEECCceEEeEEEEEEEE---------eCCCCCCccccCC--CcceEecCCcEEEEEEEecCCc
Confidence            4678999999 99999999865434556777764         1234678877665  4557889999999999999998


Q ss_pred             Ce-EEEEeCCe
Q psy16421         80 PS-IMWRREGG   89 (151)
Q Consensus        80 ~~-~~W~~~~~   89 (151)
                      |. +.|++++.
T Consensus       218 p~~i~W~~~~~  228 (290)
T 2o26_X          218 SVNSMWLKMNP  228 (290)
T ss_dssp             TCEEEEEEESS
T ss_pred             ceeEEEecCCC
Confidence            86 99999543

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.18  E-value=1.1e-10  Score=75.54  Aligned_cols=101  Identities=14%  Similarity=0.265  Sum_probs=62.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCC-eEEEEeeecCC-C
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGS-NVSMRCAASGS-P   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~-~~~l~C~~~g~-~   78 (151)
                      |.+++.+|+|.|.|.+.+..+. ....+.|.|...          ...|.+....    .....|. .+.|.|.+.+. |
T Consensus        74 I~~v~~~D~G~Y~C~~~~~~~~-~~~~~~L~V~~~----------~~~p~i~~~~----~~~~~g~~~v~L~C~~~g~~p  138 (193)
T 2if7_A           74 LSNLKMEDTGSYRAQISTKTSA-KLSSYTLRILRQ----------LRNIQVTNHS----QLFQNMTCELHLTCSVEDADD  138 (193)
T ss_dssp             ECSCCGGGCEEEEEEEECSSCE-EEEEEEEEEECC----------CEEEEEEECC----C---CSSEEEEEEEEEESCCT
T ss_pred             ECCCCcccCceEEEEEEecCCC-eEEEEEEEEEcc----------CCCCeEecCc----eeecCCCceEEEEEEEecCCC
Confidence            5789999999999999998773 344566666411          1123343322    1223455 89999999884 5


Q ss_pred             CCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeec-CCcEEEEeeecc
Q psy16421         79 PPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHE-GQQLVLECISEA  127 (151)
Q Consensus        79 ~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-g~~~~l~C~~~g  127 (151)
                      .|.+.|++ +++.+...      ..+.+.    .... .+....+|.+..
T Consensus       139 ~p~i~W~~-~g~~l~~~------~~l~i~----~~~~~~d~G~Y~C~a~N  177 (193)
T 2if7_A          139 NVSFRWEA-LGNTLSSQ------PNLTVS----WDPRISSEQDYTCIAEN  177 (193)
T ss_dssp             TCEEEEEE-TTEEEESS------SEEEEE----ECTTTCSCCEEEEEEEE
T ss_pred             ceEEEEEe-CCEEcCCC------CeEEEE----eccCcCCCCcEEEEEEC
Confidence            89999999 56554321      122221    0112 257789999864

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.18  E-value=1.4e-10  Score=77.58  Aligned_cols=71  Identities=18%  Similarity=0.293  Sum_probs=48.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~~   79 (151)
                      |.+++.+|+|.|+|.+.+..+ .....+.|.|.             .+|.+...+  . .....|+.+.|.|.+.| .|.
T Consensus        86 I~~v~~~D~G~Y~C~~~~~~~-~~~~~~~L~V~-------------~~P~v~~~~--~-~~~~~~~~~~L~C~~~g~~P~  148 (248)
T 3pv7_A           86 LPGIQLEEAGEYRCEVVVTPL-KAQGTVQLEVV-------------ASPASRLLL--D-QVGMKENEDKYMCESSGFYPE  148 (248)
T ss_dssp             ESSCCGGGCEEEEEEEEETTE-EEEEEEEEEEE-------------BCCEEEEEC--C---------CEEEEEEEEEBSS
T ss_pred             eCCCCHHHCeEEEEEEEeCCc-cceeEEEEEEe-------------cCCceEEec--C-CccccCCCcEEEEEEccEECC
Confidence            578999999999999999866 34445555553             467666544  2 23446778889999988 788


Q ss_pred             C-eEEEEeCC
Q psy16421         80 P-SIMWRREG   88 (151)
Q Consensus        80 ~-~~~W~~~~   88 (151)
                      + .+.|++++
T Consensus       149 pi~v~W~k~g  158 (248)
T 3pv7_A          149 AINITWEKQT  158 (248)
T ss_dssp             CCEEEEEEEC
T ss_pred             CeEEEEEECC
Confidence            8 99999943

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.17  E-value=4.4e-11  Score=78.39  Aligned_cols=80  Identities=14%  Similarity=0.321  Sum_probs=53.2

Q ss_pred             CccccccCCeEEEEEEEcCCC-CCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CC
Q psy16421          1 MTEVSREHMGAYLCIASNGVP-PSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SP   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~   78 (151)
                      |.+++.+|+|.|.|.+.|..+ ........|.|.          ....+|.+...+  ......+|+.+.|.|.+.| .|
T Consensus        76 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~----------~~~~~P~v~~~~--~~~~~~~g~~v~L~C~~~g~~P  143 (216)
T 2xzc_L           76 ITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIK----------RTVAAPSVFIFP--PSDEQLKSGTASVVCLLNNFYP  143 (216)
T ss_dssp             ECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEEC----------CCCBCCEEEEEC--CCHHHHHTTEEEEEEEEEEEBS
T ss_pred             ECCCCcccCEEEEEEEEeCCCcceECCCEEEEEc----------CCCCCCceEEeC--CChhhccCCcEEEEEEEEeEcC
Confidence            578999999999999999865 122334455552          112456665433  1222346889999999987 55


Q ss_pred             CC-eEEEEeCCeeeEe
Q psy16421         79 PP-SIMWRREGGEMIT   93 (151)
Q Consensus        79 ~~-~~~W~~~~~~~~~   93 (151)
                      .+ .+.|++ +++.+.
T Consensus       144 ~~~~v~W~k-~g~~~~  158 (216)
T 2xzc_L          144 REAKVQWKV-DNALQS  158 (216)
T ss_dssp             SCCEEEEEE-TTEECC
T ss_pred             CceEEEEEE-CCeecC
Confidence            54 899999 566654

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.17  E-value=7.1e-11  Score=77.44  Aligned_cols=76  Identities=16%  Similarity=0.199  Sum_probs=50.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCC--
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSP--   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~--   78 (151)
                      |.+++.+|+|.|+|.|.|..+...+..+.|.|..           ..+|.+...+. ..+.+.+|+++.|.|.+.|.|  
T Consensus        68 I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~-----------~~~p~~~~~~~-~~~~v~~G~~v~L~C~~~g~p~~  135 (213)
T 2x1w_L           68 IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVG-----------YRIYDVVLSPS-HGIELSVGEKLVLNCTARTELNV  135 (213)
T ss_dssp             EEGGGTTTCSEEEEEEC----CEECCCEEEEECB-----------CCEEEEEEESC-SCEEEETTCCEEEEEEEEECTTB
T ss_pred             EccCChhcCceEEEEEEECCeeEEEEEEEEEEeC-----------CcccceEEcCC-CCeEEcCCCCEEEEEEEECCCCC
Confidence            5688999999999999986553334445665531           12344444332 345888999999999998855  


Q ss_pred             CCeEEEEeCC
Q psy16421         79 PPSIMWRREG   88 (151)
Q Consensus        79 ~~~~~W~~~~   88 (151)
                      .+.+.|++++
T Consensus       136 ~~~i~W~~~g  145 (213)
T 2x1w_L          136 GIDFNWEYPS  145 (213)
T ss_dssp             CCEEEEECSC
T ss_pred             ceEEEEEecC
Confidence            4579999944

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.17  E-value=1.2e-10  Score=76.58  Aligned_cols=75  Identities=23%  Similarity=0.357  Sum_probs=55.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|..+ .....+.|.|..         ....+|.+.... +....+.+|+.+.|.|.+.+.|.+
T Consensus        80 i~~~~~~d~G~Y~C~~~n~~~-~~~~~~~l~V~~---------~~~~~p~~~~~~-~~~~~~~~g~~~~l~C~~~~~p~p  148 (231)
T 3ojm_B           80 MESVVPSDKGNYTCVVENEYG-SINHTYHLDVVE---------RSRHRPILQAGL-PANASTVVGGDVEFVCKVYSDAQP  148 (231)
T ss_dssp             ECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEEC---------CCCCCCEECTTC-SCCEEEETTCCEEEECCEECSSCC
T ss_pred             EecCCcccCEEEEEEEecccC-cccccEEEEEEc---------CCCCCCceeecc-CCceEEEeCCcEEEEEEEecCCCC
Confidence            468899999999999999877 445566666641         111233333221 246788899999999999999999


Q ss_pred             eEEEEe
Q psy16421         81 SIMWRR   86 (151)
Q Consensus        81 ~~~W~~   86 (151)
                      .+.|++
T Consensus       149 ~v~W~~  154 (231)
T 3ojm_B          149 HIQWIK  154 (231)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999998

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.17  E-value=3.3e-10  Score=72.62  Aligned_cols=91  Identities=13%  Similarity=0.096  Sum_probs=63.1

Q ss_pred             CCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccC----------------------------
Q psy16421         46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN----------------------------   97 (151)
Q Consensus        46 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~----------------------------   97 (151)
                      ..+|.+...+  . ..+.+|+++.|.|.+.+ +.+.+.|++++ ........                            
T Consensus         6 ~~~P~i~~~p--~-~~v~~G~~v~L~C~~~~-~~~~~~W~k~g-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   80 (184)
T 2gi7_A            6 LPKPSLQALP--S-SLVPLEKPVTLRCQGPP-GVDLYRLEKLS-SSRYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLP   80 (184)
T ss_dssp             BCCCEEEEES--C-SEEETTCCEEEEEECST-TCSEEEEEETT-TCCEESSSEEEESSCCGGGCEEEEEEEEETTEEBCC
T ss_pred             CCCCeEEeCC--C-ccccCCCcEEEEEeCCC-CCCEEEEEECC-ccccCcccEEEECcCChhhCceEEEEEEcCCCccCC
Confidence            4677777766  3 37889999999999988 78899999954 32111100                            


Q ss_pred             -------C---CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421         98 -------N---TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus        98 -------~---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                             +   ..+|.+...+ ...+.+|+++.|.|.+.+.| +.+.|+|+|..+.
T Consensus        81 s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~  134 (184)
T 2gi7_A           81 SDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAP  134 (184)
T ss_dssp             CCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTT
T ss_pred             CCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCc
Confidence                   0   1234444433 34567899999999987755 6899999976553

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.17  E-value=3.2e-11  Score=78.99  Aligned_cols=81  Identities=17%  Similarity=0.378  Sum_probs=55.1

Q ss_pred             CccccccCCeEEEEEEEcCCC----CCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC
Q psy16421          1 MTEVSREHMGAYLCIASNGVP----PSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g   76 (151)
                      |.+++.+|+|.|.|.+.|..+    ......+.|.|..         ....+|.+...+  .......|+.+.|.|.+.+
T Consensus        79 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~---------~~~~~P~~~~~~--~~~~~~~~~~v~L~C~~~g  147 (218)
T 3s96_B           79 ISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLG---------QPKSTPTLTVFP--PSSEELKENKATLVCLISN  147 (218)
T ss_dssp             ESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEES---------CCCBCCEEEEEC--CCHHHHHTTEEEEEEEEEE
T ss_pred             EccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEec---------CCCCCceEEeeC--CCcccccCCcEEEEEEECc
Confidence            578999999999999999865    1233445666641         111456665433  2334456799999999987


Q ss_pred             -CCCC-eEEEEeCCeeeEe
Q psy16421         77 -SPPP-SIMWRREGGEMIT   93 (151)
Q Consensus        77 -~~~~-~~~W~~~~~~~~~   93 (151)
                       .|.+ .+.|++ +++.+.
T Consensus       148 ~~p~~~~v~W~k-~g~~l~  165 (218)
T 3s96_B          148 FSPSGVTVAWKA-NGTPIT  165 (218)
T ss_dssp             EBSSCCEEEEEE-TTEEC-
T ss_pred             ccCCCeEEEEEE-CCEECc
Confidence             5666 899999 666654

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.16  E-value=3.7e-11  Score=79.58  Aligned_cols=80  Identities=15%  Similarity=0.426  Sum_probs=56.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CC-
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SP-   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~-   78 (151)
                      |.+++.+|+|.|.|.+.+..+........|.|.          ....+|.+...+  ......+|+.+.|.|.+.+ .| 
T Consensus        98 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~----------~~~~~p~v~~~~--~~~~~~~g~~v~l~C~~~~~~p~  165 (237)
T 3sob_L           98 ISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIK----------RTVAAPSVFIFP--PSDEQLKSGTASVVCLLNNFYPR  165 (237)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEE----------CCCBCCEEEEEC--CCHHHHHHTEEEEEEEEEEEBSS
T ss_pred             ECCCChhhCeEEEEeeccCCceEEcCcEEEEEe----------cCCCCCceEEeC--CChhhccCCceEEEEEEcccCCC
Confidence            578999999999999988765333445566663          123566665543  2334456889999999877 44 


Q ss_pred             CCeEEEEeCCeeeEe
Q psy16421         79 PPSIMWRREGGEMIT   93 (151)
Q Consensus        79 ~~~~~W~~~~~~~~~   93 (151)
                      .+.+.|++ ++..+.
T Consensus       166 ~~~v~W~k-~g~~~~  179 (237)
T 3sob_L          166 EAKVQWKV-DNALQS  179 (237)
T ss_dssp             CCEEEEEE-TTEECC
T ss_pred             ceEEEEEE-CCCCCC
Confidence            58999999 565544

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.16  E-value=7.8e-11  Score=81.22  Aligned_cols=84  Identities=23%  Similarity=0.404  Sum_probs=58.2

Q ss_pred             CccccccCCeEEEEEEE-cCCCCCCc--cceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC
Q psy16421          1 MTEVSREHMGAYLCIAS-NGVPPSVS--KRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS   77 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~-~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~   77 (151)
                      |.+++.+|+|.|+|.|. |..|....  ..+.+.+..        .....+|.+...+. ..+.+.+|+.+.|.|.+.|.
T Consensus       166 i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~--------~~~~~~P~~~~~~~-~~~~~~~g~~v~l~C~~~g~  236 (315)
T 1itb_B          166 VMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLE--------ENKPTRPVIVSPAN-ETMEVDLGSQIQLICNVTGQ  236 (315)
T ss_dssp             ESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEEC--------CCCCCCCEECSCCS-EEEECCSSSCEEEEEEEEEC
T ss_pred             EEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEec--------CCCCCCCEEecCCC-CcEEEeCCCcEEEEEEEecC
Confidence            56889999999999999 77774322  222222210        01135677765441 23567899999999999999


Q ss_pred             CCCeEEEEeCCeeeEec
Q psy16421         78 PPPSIMWRREGGEMITN   94 (151)
Q Consensus        78 ~~~~~~W~~~~~~~~~~   94 (151)
                      |.|.+.|++ ++..+..
T Consensus       237 P~p~i~W~~-~g~~i~~  252 (315)
T 1itb_B          237 LSDIAYWKW-NGSVIDE  252 (315)
T ss_dssp             TTSEEEEEE-TTEECCT
T ss_pred             CCCeeEEEE-CCEECCc
Confidence            999999999 6666554

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.16  E-value=2.1e-10  Score=76.08  Aligned_cols=75  Identities=24%  Similarity=0.379  Sum_probs=55.6

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|..+ .....+.|.|..         ....+|.+.... .....+.+|+.+.|.|.+.+.|.+
T Consensus        76 i~~v~~~d~G~Y~C~~~~~~~-~~~~~~~l~V~~---------~~~~~~~~~~~~-~~~~~~~~g~~v~L~C~~~~~p~p  144 (241)
T 3grw_A           76 MESVVPSDRGNYTCVVENKFG-SIRQTYTLDVLE---------RSPHRPILQAGL-PANQTAVLGSDVEFHCKVYSDAQP  144 (241)
T ss_dssp             ECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEEC---------CCCCCCEEEECT-TCSEECCTTCCEEEEEEEECSSCC
T ss_pred             EEeCCcccCEEEEEEEeecCC-ceEEEEEEEEec---------cCCCCceeecCC-CccceecCCCEEEEEEEEecCCCC
Confidence            467899999999999999877 445556666641         111234443322 146678889999999999999999


Q ss_pred             eEEEEe
Q psy16421         81 SIMWRR   86 (151)
Q Consensus        81 ~~~W~~   86 (151)
                      .+.|++
T Consensus       145 ~v~W~~  150 (241)
T 3grw_A          145 HIQWLK  150 (241)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999998

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.16  E-value=3.1e-10  Score=74.01  Aligned_cols=106  Identities=19%  Similarity=0.301  Sum_probs=64.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCC---CccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPS---VSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS   77 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~   77 (151)
                      |.+++.+|+|.|.|.+.+..+..   ....+.|.|..          ...+|.+.. +  .  .+.+|+.+.|.|.+.+.
T Consensus        86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~----------~~~~p~i~~-~--~--~~~~G~~v~L~C~~~~~  150 (214)
T 2zg1_A           86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTA----------LIEKPDIHF-L--E--PLESGRPTRLSCSLPGS  150 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEEC----------CCCCCEEC-----C--CCCTTCCEEEEEECTTC
T ss_pred             EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEec----------CCCCCceec-C--c--cccCCCeEEEEEEeccC
Confidence            57899999999999999876321   12456666641          122455433 2  1  25689999999999774


Q ss_pred             ----CCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         78 ----PPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        78 ----~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                          |.|.+.|+++ +....... ......+.+..    +...+....+|.+..
T Consensus       151 ~~~~p~p~v~W~~~-~~~~~~~~-~~~~~~L~i~~----~~~~~~g~Y~C~a~n  198 (214)
T 2zg1_A          151 CEAGPPLTFSWTGN-ALSPLDPE-TTRSSELTLTP----RPEDHGTNLTCQMKR  198 (214)
T ss_dssp             CSCSSCCEEEEESS-TTSSSCSS-CCCSSEEEECC----CTTCCSCEEEEEEEC
T ss_pred             CCCCCCceEEEeCC-CCccCCCC-ceeEEEEEEec----ccHHcCcEEEEEEEe
Confidence                7899999994 43211100 11111222221    234555689999865

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.16  E-value=1.5e-10  Score=75.12  Aligned_cols=108  Identities=21%  Similarity=0.291  Sum_probs=65.8

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|.|.+.+..+........+.+.            ..++......  ....+.+|+.+.+.|.+.+.|.|
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~--~~~~~~~~~~~~~~c~~~g~p~p  148 (218)
T 4frw_A           83 LRNAVQADEGEYECRVSTFPAGSFQARLRLRVL------------VPPLPSLNPG--PALEEGQGLTLAASCTAEGSPAP  148 (218)
T ss_dssp             ESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEE------------BCCCCEEEEC--SCEETTCCSEEEEEEEEEEBSCC
T ss_pred             EeeccHHHCCceeEEEEeccCceeeeEEEEEEe------------eeccceeeee--eeeeeeeccccceeeeccCCcCc
Confidence            568999999999999988765333333333322            1122222222  34566789999999999999999


Q ss_pred             eEEEEeCCeeeEecccCCCCCC------eeeeCCceeEeecCCcEEEEeeecc
Q psy16421         81 SIMWRREGGEMITNSFNNTVPP------IVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~~~~~p------~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      .+.|++ +++.+.........-      .+.+.    .+...+...++|.|..
T Consensus       149 ~i~W~~-~~~~~~~~~~~~~~~~~~~~s~L~i~----~~~~~d~g~YtC~a~N  196 (218)
T 4frw_A          149 SVTWDT-EVKGTTSSRSFKHSRSAAVTSEFHLV----PSRSMNGQPLTCVVSH  196 (218)
T ss_dssp             EEEEEE-SSCCEEEEEEEECSSSEEEEEEEEEC----CCGGGTTCEEEEEEEC
T ss_pred             eEEEEE-CCcccccCceEecCCcEEEEEEEEEe----eCCHHhCeEEEEEEEe
Confidence            999999 454443222111000      11111    1345667789999864

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.16  E-value=2.4e-10  Score=73.89  Aligned_cols=89  Identities=15%  Similarity=0.187  Sum_probs=61.7

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecc-------cC----------------------
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS-------FN----------------------   97 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~-------~~----------------------   97 (151)
                      .+|.+...+  .. .+.+|+++.|.|.+.+ +.+.+.|+++ +..+...       ..                      
T Consensus         4 ~~P~i~~~p--~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~-g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   78 (196)
T 3p2t_A            4 PKPTLWAEP--GS-VISWGNSVTIWCQGTL-EAREYRLDKE-ESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYR   78 (196)
T ss_dssp             CCCEEEEES--CS-EEETTCCEEEEEECCT-TCCEEEEEET-TSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEccC--CC-cCCCCCcEEEEeeCCC-CCCEEEEEEC-CCCCcccccccccCCceEEEEeccCCcccCceEEEEEe
Confidence            467776666  34 7889999999999988 7789999994 4433210       00                      


Q ss_pred             ---------------C---CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421         98 ---------------N---TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus        98 ---------------~---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                                     +   ..+|.+...+.. .+.+|+++.|.|.+.+. ++.+.|+|+|..+
T Consensus        79 n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~  139 (196)
T 3p2t_A           79 SPVGWSQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAH  139 (196)
T ss_dssp             ETTEEBCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCC
T ss_pred             CCCcccCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcc
Confidence                           0   113344433332 57899999999999884 4689999997644

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.15  E-value=1.9e-10  Score=79.42  Aligned_cols=106  Identities=12%  Similarity=0.120  Sum_probs=66.4

Q ss_pred             ccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC-
Q psy16421          2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP-   80 (151)
Q Consensus         2 ~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~-   80 (151)
                      ..+..+|.|.|+|.|.|..+. ......+.           +.+..+|.+...+. ....+.+|+.+.|.|.+.|+|.| 
T Consensus       182 ~~~~~~d~g~Y~C~a~n~~~~-~~~~~~~~-----------l~V~~~P~v~~~~~-~~~~~~~g~~v~l~C~~~g~P~p~  248 (313)
T 4fqp_A          182 VPSSQVDGKNVTCKVEHESFE-KPQLLTVN-----------LTVYYPPEVSISGY-DNNWYLGQNEATLTCDARSNPEPT  248 (313)
T ss_dssp             CCCGGGTTCEEEEEEECTTSS-SCEEEEEE-----------CCBCEEEEEEEECC-CSCEETTCCCEEEEEEEEEESCCC
T ss_pred             cccccccCeeEEEEEEccCcC-ccceeeee-----------cccccCCccccccc-cceeecCCCeEEEEEEecCCCCCc
Confidence            456778999999999998663 22222222           33445677654432 34556678999999999999988 


Q ss_pred             eEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeec
Q psy16421         81 SIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISE  126 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~  126 (151)
                      .+.|++ +++.+.... ...-..+.+.    .+...+.....|.|.
T Consensus       249 ~v~W~~-~~~~l~~~~-~~~~~~L~i~----~v~~~d~G~Y~C~a~  288 (313)
T 4fqp_A          249 GYNWST-TMGPLPPFA-VAQGAQLLIR----PVDKPINTTLICNVT  288 (313)
T ss_dssp             EEEEEE-TTBSCCTTE-EEETTEEEEC----CCSSCCEEEEEEEEE
T ss_pred             EEEEEE-CCEECCCce-EEeCCEEEEC----cCChhhCEEEEEEEE
Confidence            599999 454433211 0011122222    234567778889875

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.14  E-value=5.1e-10  Score=72.75  Aligned_cols=39  Identities=18%  Similarity=0.356  Sum_probs=33.4

Q ss_pred             CCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        107 PSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       107 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+
T Consensus       123 ~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~  161 (212)
T 2r15_A          123 LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQT  161 (212)
T ss_dssp             CCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCC
T ss_pred             CCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccC
Confidence            355678899999999999999999999999998776543

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.14  E-value=2.2e-10  Score=73.72  Aligned_cols=96  Identities=13%  Similarity=0.178  Sum_probs=62.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCCC-ccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSV-SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++++|+|.|+|.+.|..|... ...+.|.|.          ....+|.+..          .+..+.|.|.+.+.|.
T Consensus        70 I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~----------~~~~~P~i~~----------~~~~v~L~C~~~~~p~  129 (182)
T 1hnf_A           70 IKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ----------ERVSKPKISW----------TCINTTLTCEVMNGTD  129 (182)
T ss_dssp             ECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE----------CCCCCCEEEE----------ETTTTEEEEECSSCSS
T ss_pred             ECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEc----------CcCCCCEEEE----------ccCcEEEEeEccCCCC
Confidence            678999999999999999877432 244556653          1112333322          2347999999998889


Q ss_pred             CeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         80 PSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +.+.|++ +++.+.. .    ...+..     .....+.....|.+..
T Consensus       130 ~~~~W~~-~g~~l~~-~----~~~i~~-----~~~~~d~G~Y~C~a~N  166 (182)
T 1hnf_A          130 PELNLYQ-DGKHLKL-S----QRVITH-----KWTTSLSAKFKCTAGN  166 (182)
T ss_dssp             CEEEEEE-SSCEEEE-E----SSCEEE-----ECCSCEEEEEEEEEEC
T ss_pred             CEEEEEE-CCEECCC-C----CcEEEE-----ecccCCCcEEEEEEEe
Confidence            9999999 5666521 1    011111     1124667889999864

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.14  E-value=1.9e-10  Score=77.62  Aligned_cols=72  Identities=18%  Similarity=0.294  Sum_probs=53.3

Q ss_pred             CccccccCCeEEEEEEEcCCCC----CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP----SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g   76 (151)
                      |.+++++|+|.|.|.+.|..+.    .....+.|.|             ..+|.+...+  ..+.+.+|+++.|.|.+.+
T Consensus        83 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V-------------~~~~~v~~~p--~~~~v~~G~~v~L~C~~~~  147 (256)
T 1nqb_A           83 LSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTV-------------SSDIELTQTP--LSLPVSLGDQASISCRSSQ  147 (256)
T ss_dssp             ECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEE-------------CCCCCEEEEC--SEEEECTTCCEEEEEEESS
T ss_pred             ECcCChhhCEEEEEEEeeccCccceeEEcCceeeee-------------cccccEEecC--cEEEEecCCcEEEEeEecC
Confidence            5789999999999999998652    1122344444             3455555544  5677889999999999999


Q ss_pred             CCCC-----eEEEEeC
Q psy16421         77 SPPP-----SIMWRRE   87 (151)
Q Consensus        77 ~~~~-----~~~W~~~   87 (151)
                      .+.+     .+.|++.
T Consensus       148 ~~~~~~~~~~v~W~k~  163 (256)
T 1nqb_A          148 SIVHSNGNTYLEWYLQ  163 (256)
T ss_dssp             CCBCTTSCBCEEEEEE
T ss_pred             cccccccceEEEEEEE
Confidence            8765     8999993

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.13  E-value=9.2e-11  Score=76.98  Aligned_cols=111  Identities=19%  Similarity=0.365  Sum_probs=64.6

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeee-cCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA-SGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~~~   79 (151)
                      |.+++.+|+|.|+|.+.+..  ..+..+.|.|.          ....+|.+...+   ...+.+|+.+.|.|.+ .+.|.
T Consensus        76 I~~v~~~D~G~Y~C~~~~~~--~~~~~~~l~V~----------~~~~~p~i~~~~---~~~v~~G~~~~l~C~~~~g~P~  140 (222)
T 4i0k_A           76 LQRVRVTDEGSYTCFVSIQD--FDSAAVSLQVA----------APYSKPSMTLEP---NKDLRPGNMVTITCSSYQGYPE  140 (222)
T ss_dssp             ECSCCGGGCSCEEEEEEECC--CCCCCCCCCCC----------BCCCCCEEECCC--------CCSEEEEEEEEEEEBSC
T ss_pred             ECCcccccCEEEEEEEEeCC--CceEEEEEEEE----------cCCCCCcEEeCC---CceecCCceEEEEEecccccCC
Confidence            56899999999999999863  23344444442          112345555543   3356789999999998 88999


Q ss_pred             CeEEEEeCCeeeEecccC---C-CCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         80 PSIMWRREGGEMITNSFN---N-TVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~---~-~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +.+.|++.++..+.....   . ...-.+.. .....+...+.....|.+..
T Consensus       141 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-l~i~~v~~~d~G~Y~C~a~n  191 (222)
T 4i0k_A          141 AEVFWKDGQGVPLTGNVTTSQMANERGLFDV-HSVLRVVLGANGTYSCLVRN  191 (222)
T ss_dssp             CEEEEECTTSCBCCSEEEEEEEECTTSCEEE-EEEEEEECCTTCEEEEEEEE
T ss_pred             CeEEEEcCCCccCCCCcceeEEcCCCCeEEE-EEEEEEEeCCCCEEEEEEEC
Confidence            999999855544321110   0 00000000 01123455667789999864

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.13  E-value=8.7e-10  Score=81.30  Aligned_cols=30  Identities=10%  Similarity=0.328  Sum_probs=23.6

Q ss_pred             cCCcEE-EEeeecccCCC--eeEEEcCCceecc
Q psy16421        115 EGQQLV-LECISEAYPKS--VNYWTREKGDMIA  144 (151)
Q Consensus       115 ~g~~~~-l~C~~~g~p~~--~~~W~k~~~~~~~  144 (151)
                      .|+.+. |.|.+.|.+++  .+.|+|||..+..
T Consensus       414 ~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~  446 (512)
T 1zvo_C          414 PPEAASWLLCEVSGFSPPNILLMWLEDQREVNT  446 (512)
T ss_pred             CCCCceEEEEEEeeeCCCCcEEEEEECCeECcC
Confidence            588899 99999995443  4899999876643

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.13  E-value=7.4e-10  Score=72.24  Aligned_cols=87  Identities=18%  Similarity=0.253  Sum_probs=58.6

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCC-e-e----------------------------eEeccc------C----
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREG-G-E----------------------------MITNSF------N----   97 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~-~-~----------------------------~~~~~~------~----   97 (151)
                      ..+.+.+|+++.|.|.+.+.+.+.+.|++.+ + .                            .+....      +    
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C   88 (213)
T 3r06_A            9 SSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYYC   88 (213)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEE
T ss_pred             CEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEEE
Confidence            4577889999999999999889999999722 0 0                            010000      0    


Q ss_pred             -----------------C---CCCCeeeeCCceeEeecCCcEEEEeeecccCCC--eeEEEcCCceecc
Q psy16421         98 -----------------N---TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKS--VNYWTREKGDMIA  144 (151)
Q Consensus        98 -----------------~---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~k~~~~~~~  144 (151)
                                       +   ..+|.+...+.......|+.+.|.|.+.|.|++  .++|+|+|..+..
T Consensus        89 ~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  157 (213)
T 3r06_A           89 QQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRD  157 (213)
T ss_dssp             EECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             ecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCC
Confidence                             1   233444443333334568889999999986653  7999999876653

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.13  E-value=3.6e-11  Score=79.63  Aligned_cols=80  Identities=16%  Similarity=0.375  Sum_probs=44.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC-CC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS-PP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-~~   79 (151)
                      |.+++.+|+|.|.|.+.|..+........|.|..          ...+|.+...+  ......+|+.+.|.|.+.|. |.
T Consensus        97 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~----------~~~~p~v~~~~--~~~~~~~g~~v~L~C~~~g~~p~  164 (233)
T 3bqu_C           97 IENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKR----------ADAAPTVSIFP--PSSEQLTSGGASVVCFLNNFYPK  164 (233)
T ss_dssp             -----CCCCSEEEEEECSSSSCCBCCCCBC---C----------CCBCCEEEEEC--CCHHHHHTTEEEEEEEEEEEBSS
T ss_pred             ECCCCHHHCEEEEEEEecCCceeecCCEEEEEeC----------CCCCCEEEEeC--CCHHhhcCCceEEEEEEccccCC
Confidence            6789999999999999987653333333444421          11356665533  22233479999999999884 44


Q ss_pred             C-eEEEEeCCeeeEe
Q psy16421         80 P-SIMWRREGGEMIT   93 (151)
Q Consensus        80 ~-~~~W~~~~~~~~~   93 (151)
                      + .+.|++ +++.+.
T Consensus       165 ~~~v~W~k-~g~~~~  178 (233)
T 3bqu_C          165 DINVKWKI-DGSERQ  178 (233)
T ss_dssp             CEEEEEEE-C-----
T ss_pred             ceEEEEEE-CCeeCC
Confidence            3 799999 566554

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.13  E-value=2.9e-10  Score=75.52  Aligned_cols=78  Identities=19%  Similarity=0.323  Sum_probs=54.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCC--
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSP--   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~--   78 (151)
                      |.+++.+|+|.|.|.+.|..+........|.|......       ..++.+...+  ....+.+|+++.|.|.+.+.+  
T Consensus        79 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~-------~~~~~~~~~~--~~~~v~~G~~v~L~C~~~g~p~~  149 (240)
T 1moe_A           79 IDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSG-------GGGEVQLQQS--GAELVEPGASVKLSCTASGFNIK  149 (240)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCC-------CCCCCEEEEC--CCEEECTTCCEEEEEEEESSCGG
T ss_pred             EcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCC-------CCceEEEeCC--CceEEeCCCcEEEEEEEcCccCC
Confidence            57899999999999999986643445566666421000       0122233333  456788999999999998877  


Q ss_pred             CCeEEEEeC
Q psy16421         79 PPSIMWRRE   87 (151)
Q Consensus        79 ~~~~~W~~~   87 (151)
                      .+.+.|++.
T Consensus       150 ~~~v~W~k~  158 (240)
T 1moe_A          150 DTYMHWVKQ  158 (240)
T ss_dssp             GSCEEEEEE
T ss_pred             CCEEEEEEE
Confidence            468999994

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.12  E-value=6.4e-10  Score=73.38  Aligned_cols=91  Identities=15%  Similarity=0.049  Sum_probs=64.7

Q ss_pred             CCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEe----------ccc--C----------------
Q psy16421         46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMIT----------NSF--N----------------   97 (151)
Q Consensus        46 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~----------~~~--~----------------   97 (151)
                      ..+|.+...+  . ..+.+|++++|.|.+.+ +.+.+.|+| +++.+.          ...  .                
T Consensus         7 ~~~P~i~~~p--~-~~v~~G~~vtL~C~~~~-~~~~~~W~k-~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   81 (218)
T 1uct_A            7 FPMPFISAKS--S-PVIPLDGSVKIQCQAIR-EAYLTQLMI-IKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQC   81 (218)
T ss_dssp             SCCCCEEESS--C-SEEETTCCEEEEECCCT-TCSEEEEEE-EETTEEEECSEECC----CCCEEEECSCCGGGCEEEEE
T ss_pred             CCCCEEEecC--C-CccCCCCCEEEEEEcCC-CCCEEEEEE-CCCcccccccccCCCCcceeeEEEEcccccccCEEEEE
Confidence            4678888776  3 47889999999999987 688999999 443321          001  1                


Q ss_pred             ------------------C---CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421         98 ------------------N---TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus        98 ------------------~---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                                        +   ..+|.+...+ ...+.+|+++.|.|.+.+.|.+.+.|+|+|..+
T Consensus        82 ~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~  146 (218)
T 1uct_A           82 QYRIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELS  146 (218)
T ss_dssp             EEEETTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSS
T ss_pred             EEEcCCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCcc
Confidence                              0   1234444433 346789999999998778888899999997654

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.12  E-value=1.9e-10  Score=76.81  Aligned_cols=84  Identities=14%  Similarity=0.215  Sum_probs=53.3

Q ss_pred             CccccccCCeEEEEEEEcCCCC-CCccceEEEEeccccce-eEEe-ecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP-SVSKRIMLIVQCQYFSK-LYIY-TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS   77 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~-~~~~-~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~   77 (151)
                      |.+++.+|+|.|+|.+.|..+. .......|.|....... ...+ ....++.+...+  ..+.+.+|+++.|.|.+.+.
T Consensus        85 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~G~~v~L~C~~~~~  162 (247)
T 2ghw_B           85 MNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSP--ATLSLSPGERATLSCRASQS  162 (247)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEEC--SEEEECTTSCEEEEEEESSC
T ss_pred             ECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccC--CEEEecCCCcEEEEEEeCCC
Confidence            5789999999999999997321 12233456554210000 0000 001234444444  45678899999999999999


Q ss_pred             CCCeEEEEe
Q psy16421         78 PPPSIMWRR   86 (151)
Q Consensus        78 ~~~~~~W~~   86 (151)
                      +.+.+.|++
T Consensus       163 ~~~~v~W~k  171 (247)
T 2ghw_B          163 VRSNLAWYQ  171 (247)
T ss_dssp             CTTCEEEEE
T ss_pred             ccceEEEEE
Confidence            989999998

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.11  E-value=6.5e-10  Score=70.88  Aligned_cols=102  Identities=16%  Similarity=0.277  Sum_probs=66.0

Q ss_pred             cccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCC-CCeEE
Q psy16421          5 SREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSP-PPSIM   83 (151)
Q Consensus         5 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~-~~~~~   83 (151)
                      +.+|+|.|+|.+.|.    ....+.|.|             ..+|.+...+  ....+.+|+.+.|.|.+.|.| .+.+.
T Consensus        57 ~~~d~G~Y~C~~~n~----~~~~~~l~V-------------~~~P~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~~i~  117 (184)
T 3b5h_A           57 SDDQWGEYSCVFLPE----PMGTANIQL-------------HGPPRVKAVK--SSEHINEGETAMLVCKSESVPPVTDWA  117 (184)
T ss_dssp             GGGCCEEEEEEEEST----TSCEEEEEE-------------CCSCCCEESC--SEEEECTTSCEEEEEECCCSSCCCEEE
T ss_pred             chhhCeEEEEEEECC----cCcEEEEEE-------------ecCCceeecC--CCcEEcCCCcEEEEEEECCCCCCCeEE
Confidence            478999999999982    234455555             3677777665  456788999999999999999 79999


Q ss_pred             EEe---CCeeeEecccCCCCCCeeeeC-----CceeEee-cCCcEEEEeeecc
Q psy16421         84 WRR---EGGEMITNSFNNTVPPIVKIP-----SQLIGAH-EGQQLVLECISEA  127 (151)
Q Consensus        84 W~~---~~~~~~~~~~~~~~~p~~~~~-----~~~~~~~-~g~~~~l~C~~~g  127 (151)
                      |++   ++...+....  ...-.+...     .....+. ..+.....|.+..
T Consensus       118 W~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N  168 (184)
T 3b5h_A          118 WYKITDSEDKALMNGS--ESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTS  168 (184)
T ss_dssp             EEECCSSSCEECCTTG--GGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEE
T ss_pred             EEEcCCCCCEEeecCC--CCEEEEEecCCeeEEEEeeccccccCceEEEEEEe
Confidence            999   4444332111  000011100     0111244 5788899999863

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.11  E-value=8.8e-11  Score=77.10  Aligned_cols=79  Identities=19%  Similarity=0.450  Sum_probs=53.1

Q ss_pred             CccccccCCeEEEEEEEcCCCC---CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP---SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-   76 (151)
                      |.+++.+|+|.|.|.+.|..+.   .....+.|.|..         ....+|.+...+  ....+.+|+.+.|.|.+.| 
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~---------~~~~~P~i~~~~--~~~~~~~g~~v~L~C~~~g~  151 (219)
T 1c1e_H           83 INNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSS---------AKTTPPSVYPLA--PGSAAQTNSMVTLGCLVKGY  151 (219)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECC---------CCCBCCEEEEEC--CCSSSCCSSEEEEEEEEEEE
T ss_pred             ECCCCcccCEEEEEEEeccCcccceeecCceEEEEec---------CCCCCCeEEEec--CccccccCCeEEEEEEcccc
Confidence            5789999999999999997631   122345565541         011235544322  1224567999999999988 


Q ss_pred             CCCC-eEEEEeCCeee
Q psy16421         77 SPPP-SIMWRREGGEM   91 (151)
Q Consensus        77 ~~~~-~~~W~~~~~~~   91 (151)
                      .|.| .+.|+++ +..
T Consensus       152 ~P~p~~v~W~~~-g~~  166 (219)
T 1c1e_H          152 FPEPVTVTWNSG-SLS  166 (219)
T ss_dssp             BSSCCEEEEGGG-TBC
T ss_pred             cCCCeEEEEEeC-Ccc
Confidence            8888 9999994 443

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.11  E-value=4.9e-11  Score=77.90  Aligned_cols=116  Identities=16%  Similarity=0.261  Sum_probs=67.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCC--CccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC-
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPS--VSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS-   77 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-   77 (151)
                      |.+++.+|+|.|+|.+.|..+..  ......|.|.         .....+|.+...+  ....+.+|+.+.|.|.+.|. 
T Consensus        73 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~---------~~~~~~p~v~~~~--~~~~~~~g~~v~L~C~~~g~~  141 (212)
T 1nfd_E           73 ISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVL---------RGPKSSPKVTVFP--PSPEELRTNKATLVCLVNDFY  141 (212)
T ss_dssp             ETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEE---------CCCCBCCEEECCC--CCHHHHHTTEECCCEEEEEEB
T ss_pred             ECcCCcccCEEEEEEEEcccCcccccCCceEEEEc---------cCCCCCCEEEeeC--CchHhccCCceEEEEEEEeeE
Confidence            57899999999999999732211  1233455553         1112456665533  23344579999999999886 


Q ss_pred             CC-CeEEEEeCCeeeEecccCCC----CCCeeee--CCceeEeecCCcEEEEeeeccc
Q psy16421         78 PP-PSIMWRREGGEMITNSFNNT----VPPIVKI--PSQLIGAHEGQQLVLECISEAY  128 (151)
Q Consensus        78 ~~-~~~~W~~~~~~~~~~~~~~~----~~p~~~~--~~~~~~~~~g~~~~l~C~~~g~  128 (151)
                      |. +.+.|++ +++.+.......    ....+..  ......+...+....+|.+...
T Consensus       142 p~~~~v~W~k-~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~  198 (212)
T 1nfd_E          142 PGSATVTWKA-NGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHE  198 (212)
T ss_dssp             SSCCEEEEEE-TTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECT
T ss_pred             CCccEEEEEE-CCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeC
Confidence            54 7999999 666665321100    0000111  1111123345677889998754

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.11  E-value=8e-11  Score=78.96  Aligned_cols=81  Identities=20%  Similarity=0.457  Sum_probs=53.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~~   79 (151)
                      |.+++.+|+|.|+|.+.|..+........+.|.          ....+|.+...+  ......+|+.+.|.|.+.| .|.
T Consensus       117 I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~----------~~~~~P~v~~~~--~~~~~~~g~~v~l~C~~~g~~p~  184 (254)
T 2c1o_A          117 ISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELK----------RADAAPTVSIFP--PSSEQLTSGGASVVCFLNNFYPK  184 (254)
T ss_dssp             ESSCCGGGCSEEEEEECSSSSCEEBCCEEEEEC----------CCCBCCEEEEEC--CCHHHHHTTEEEEEEEEEEEBSS
T ss_pred             ECcCCcccCEEEEEEEEcCcceEecCCEEEEEC----------CCCCCCeeEeec--CChhhccCCcEEEEEEEecccCC
Confidence            578999999999999998865333334455553          112356665533  2223346789999999987 444


Q ss_pred             -CeEEEEeCCeeeEec
Q psy16421         80 -PSIMWRREGGEMITN   94 (151)
Q Consensus        80 -~~~~W~~~~~~~~~~   94 (151)
                       +.+.|++ +++.+..
T Consensus       185 ~~~v~W~k-~g~~l~~  199 (254)
T 2c1o_A          185 DINVKWKI-DGSERQN  199 (254)
T ss_dssp             CCEEEEEE-SSSEECT
T ss_pred             CcEEEEEE-CCCcccC
Confidence             4699999 5666543

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.11  E-value=3.4e-10  Score=75.10  Aligned_cols=84  Identities=13%  Similarity=0.203  Sum_probs=50.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCC----CccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPS----VSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g   76 (151)
                      |.+++.+|+|.|.|.+.|..+..    ......|.|......... -.....+.+...+  ..+.+.+|+++.|.|.+.+
T Consensus        77 I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p-~~~~~~~~v~~~p--~~~~v~~G~~v~L~C~~~~  153 (238)
T 2p1y_A           77 LELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKK-DAAKKDGQVRQSP--QSLTVWEGETAILNCSYEN  153 (238)
T ss_dssp             ESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHH-HHHHHHTCCEEEC--SEEEEETTSCEEEEEECCC
T ss_pred             EecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcC-CcccceeeEEccC--ceEEEeCCCeEEEEEEEec
Confidence            57899999999999999986521    112345555310000000 0000001344434  4577889999999999999


Q ss_pred             CCCCeEEEEeC
Q psy16421         77 SPPPSIMWRRE   87 (151)
Q Consensus        77 ~~~~~~~W~~~   87 (151)
                      .+.+.+.|++.
T Consensus       154 ~p~~~i~W~k~  164 (238)
T 2p1y_A          154 SAFDYFPWYQQ  164 (238)
T ss_dssp             TTCCEEEEEEE
T ss_pred             CCCCcEEEEEE
Confidence            99999999984

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.11  E-value=3.4e-10  Score=76.14  Aligned_cols=85  Identities=16%  Similarity=0.239  Sum_probs=55.0

Q ss_pred             CccccccCCeEEEEEEEcCCC---CCCccceEEEEeccccce--eEEeecC-CCCeeEeCCCCCceEeecCCeEEEEeee
Q psy16421          1 MTEVSREHMGAYLCIASNGVP---PSVSKRIMLIVQCQYFSK--LYIYTSS-MPPDILDYPTSSDIMVREGSNVSMRCAA   74 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~---~~~~~~~~l~v~~~~~~~--~~~~~~~-~~p~~~~~~~~~~~~~~~g~~~~l~C~~   74 (151)
                      |.+++.+|+|.|.|.+.|..+   ........|.|.......  .....+. .++.+...+  ..+.+.+|+++.|.|.+
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~v~~G~~v~L~C~~  162 (256)
T 3umt_A           85 LRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSP--SSLSASLGERVSITCRA  162 (256)
T ss_dssp             ECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEEC--SEEEECTTCCEEEEEEE
T ss_pred             ECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCC--CeEEEECCCCEEEEEEE
Confidence            578999999999999998721   123344566664210000  0000001 255665555  56788899999999999


Q ss_pred             cCCCCCeEEEEeC
Q psy16421         75 SGSPPPSIMWRRE   87 (151)
Q Consensus        75 ~g~~~~~~~W~~~   87 (151)
                      .+.+.+.+.|++.
T Consensus       163 ~~~~~~~v~W~k~  175 (256)
T 3umt_A          163 SQDIGSNLNWLQQ  175 (256)
T ss_dssp             SSCCTTCEEEEEE
T ss_pred             ecCCCcEEEEEEE
Confidence            9988889999983

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.10  E-value=2.6e-10  Score=74.34  Aligned_cols=83  Identities=16%  Similarity=0.221  Sum_probs=55.2

Q ss_pred             eEeecCCeEEEEeeecCCCCCeEEEEeCCee-----eEecccC----------------------------------CCC
Q psy16421         60 IMVREGSNVSMRCAASGSPPPSIMWRREGGE-----MITNSFN----------------------------------NTV  100 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~-----~~~~~~~----------------------------------~~~  100 (151)
                      ..+.+|+++.|.|.+.|.|.|.+.|++..+.     .......                                  +..
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~   90 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYS   90 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEB
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEe
Confidence            3445899999999999999999999983221     1111000                                  112


Q ss_pred             CCe-eeeCCceeEeecCCcEEEEeeecccCC---CeeEEEcCCceec
Q psy16421        101 PPI-VKIPSQLIGAHEGQQLVLECISEAYPK---SVNYWTREKGDMI  143 (151)
Q Consensus       101 ~p~-~~~~~~~~~~~~g~~~~l~C~~~g~p~---~~~~W~k~~~~~~  143 (151)
                      +|. +.+.+. ..+.+|+.+.|.|.+.|.++   +.|+|+|++..+.
T Consensus        91 ~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~  136 (202)
T 1vca_A           91 FPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMK  136 (202)
T ss_dssp             CCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEE
T ss_pred             CCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECc
Confidence            222 222222 45789999999999998644   3699999987553

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.10  E-value=4.4e-10  Score=76.06  Aligned_cols=77  Identities=21%  Similarity=0.334  Sum_probs=55.2

Q ss_pred             CccccccCCeEEEEEEEcCCC----CCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC
Q psy16421          1 MTEVSREHMGAYLCIASNGVP----PSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g   76 (151)
                      |.+++++|+|.|+|.+.+...    ...+..+.|.|.          ....+|.+...+.   ..+.+|++++|.|.+.+
T Consensus        66 I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~----------~~~~~P~l~~~p~---~~V~~G~~vtL~C~~~~  132 (257)
T 1b6u_A           66 IGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVIT----------GLYEKPSLSAQPG---PTVLAGESVTLSCSSRS  132 (257)
T ss_dssp             ECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEE----------CSSCCCEEECSSC---TTCBTTCEEEEEEECSS
T ss_pred             eecCCcccCEEEEEeEeccCCCccccccCCCEEEecc----------cCCCCcceEccCC---CccCCCCEEEEEEeCCC
Confidence            568899999999999986432    234566677764          2234677766552   35789999999999987


Q ss_pred             CCCCeEEEEeCCeeeE
Q psy16421         77 SPPPSIMWRREGGEMI   92 (151)
Q Consensus        77 ~~~~~~~W~~~~~~~~   92 (151)
                      . .+.+.|+|+ ++.+
T Consensus       133 ~-~~~~~w~k~-g~~~  146 (257)
T 1b6u_A          133 S-YDMYHLSRE-GEAH  146 (257)
T ss_dssp             C-CSEEEEEET-TSSC
T ss_pred             C-CcEEEEEEC-Cccc
Confidence            5 478999994 4443

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.10  E-value=1.9e-10  Score=77.19  Aligned_cols=85  Identities=12%  Similarity=0.135  Sum_probs=55.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccc--eeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFS--KLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSP   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~   78 (151)
                      |.+++.+|+|.|.|.+.|..+........|.|......  ......+..++.+...+  ....+.+|+++.|.|.+.+.+
T Consensus        84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p--~~~~v~~G~~v~L~C~~~~~~  161 (253)
T 3uzq_A           84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTP--ASLAVSLGQRATISCRASENV  161 (253)
T ss_dssp             ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEEC--SEEEECTTSCEEEEEEESSCC
T ss_pred             eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcC--CeEEEeCCCCEEEEEEecCcc
Confidence            57899999999999999966533345566666421000  00000112345555555  567888999999999999987


Q ss_pred             CC----eEEEEeC
Q psy16421         79 PP----SIMWRRE   87 (151)
Q Consensus        79 ~~----~~~W~~~   87 (151)
                      .+    .+.|++.
T Consensus       162 ~~~~~~~v~W~r~  174 (253)
T 3uzq_A          162 DRYGNSFMHWYQQ  174 (253)
T ss_dssp             EETTEECEEEEEE
T ss_pred             ccCCCcEEEEEEE
Confidence            76    8999983

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.10  E-value=2.7e-10  Score=76.39  Aligned_cols=113  Identities=17%  Similarity=0.256  Sum_probs=56.3

Q ss_pred             eEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCee-EeCCCCCceE-eecCCeEEEEeeecCCC----CCeEE
Q psy16421         10 GAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDI-LDYPTSSDIM-VREGSNVSMRCAASGSP----PPSIM   83 (151)
Q Consensus        10 G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~-~~~g~~~~l~C~~~g~~----~~~~~   83 (151)
                      |.|.|...+..+...-                 ..+..+|.+ ...+  .... +..|+.+.|.|.+.|..    ...+.
T Consensus         1 ~~~~~~~~~~~~~c~~-----------------~~~~~~P~v~i~~p--s~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~   61 (240)
T 4acp_A            1 GTKSCDKTHTCPPCPA-----------------PELLGGPSVFLFPP--KPKDTLMISRTPEVTCVVVDVSHEDPEVKFN   61 (240)
T ss_dssp             ---------------------------------------CEEEEECC--CHHHHHSSSSCCEEEEEEESCCC--CCCEEE
T ss_pred             CceeeeeeecCCCCCc-----------------cccCCCCEEEEECc--ChHHhcccCCCcEEEEEEeccccCCCccEEE
Confidence            7899998886552100                 111123443 4443  3333 44699999999998853    34799


Q ss_pred             EEeCCeeeEecc---------cC-------------------------------------------CCCCCeeeeCCcee
Q psy16421         84 WRREGGEMITNS---------FN-------------------------------------------NTVPPIVKIPSQLI  111 (151)
Q Consensus        84 W~~~~~~~~~~~---------~~-------------------------------------------~~~~p~~~~~~~~~  111 (151)
                      |++ +++.+...         ..                                           ...+|.+.+.+...
T Consensus        62 W~k-~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~  140 (240)
T 4acp_A           62 WYV-DGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSR  140 (240)
T ss_dssp             EEE-TTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCG
T ss_pred             EEE-CCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCCh
Confidence            999 55554211         00                                           01234443332222


Q ss_pred             EeecCCcEEEEeeecc-cCCC-eeEEEcCCcee
Q psy16421        112 GAHEGQQLVLECISEA-YPKS-VNYWTREKGDM  142 (151)
Q Consensus       112 ~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~  142 (151)
                      ....|+.+.|.|.+.| +|.+ .+.|+|||..+
T Consensus       141 ~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~  173 (240)
T 4acp_A          141 DELTKNQVSLTCLVKGFYPSDIAVEWESNGQPE  173 (240)
T ss_dssp             GGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             HHhcCCceEEEEEEeEEeCCCcEEEEEECCEEC
Confidence            2235899999999999 5654 69999998765

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.10  E-value=1.5e-10  Score=76.29  Aligned_cols=94  Identities=15%  Similarity=0.223  Sum_probs=58.0

Q ss_pred             CCCeeEeCCCCCceE--eecCCeEEEEeeecCC---C-CCeEEEEeCCeeeEecc---------cC--------------
Q psy16421         47 MPPDILDYPTSSDIM--VREGSNVSMRCAASGS---P-PPSIMWRREGGEMITNS---------FN--------------   97 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~--~~~g~~~~l~C~~~g~---~-~~~~~W~~~~~~~~~~~---------~~--------------   97 (151)
                      .+|.+...+  ....  +.+|+++.|.|.+.|.   + .+.+.|++++ +.+...         ..              
T Consensus         8 ~~p~v~~~p--p~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~-~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   84 (218)
T 2rgs_A            8 GGPSVFIFP--PNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNN-VEVHTAQTQTHREDYNSTIRVVSTLPIQHQD   84 (218)
T ss_dssp             -CCEEEEEC--CCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETT-EEECCCEEEEEEETTTTEEEEEEEEECCHHH
T ss_pred             CCCEEEEEC--cCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECC-ccccCcccccccccCCCeEEEEEEEEEcHHH
Confidence            345554433  2233  6789999999999876   3 3789999954 433210         00              


Q ss_pred             -----------------------------CCCCCeeeeCCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421         98 -----------------------------NTVPPIVKIPSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus        98 -----------------------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                                                   +..+|.+.+.+......+|+.+.|.|.+.| +|.+ .++|+|||..+.
T Consensus        85 ~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~  161 (218)
T 2rgs_A           85 WMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEE  161 (218)
T ss_dssp             HHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             cCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEecc
Confidence                                         012333332221111235899999999999 6766 799999987653

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.10  E-value=1.1e-10  Score=78.35  Aligned_cols=80  Identities=19%  Similarity=0.404  Sum_probs=53.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~~   79 (151)
                      |.+++.+|+|.|.|.+.|..+........|.|..          ...+|.+...+  ....+.+|+.+.|.|.+.| .|.
T Consensus       113 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~----------~~~~P~v~~~~--~~~~~~~g~~v~L~C~~~g~~p~  180 (252)
T 3bkj_L          113 ISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKR----------ADAAPTVSIFP--PSSEQLTSGGASVVCFLNNFYPK  180 (252)
T ss_dssp             ESSCCGGGCEEEEEEECSBSSCEECCCEEEEECC----------CCBCCEEEEEC--CCHHHHHHTEEEEEEEEEEEBSS
T ss_pred             ECCCCcccCEEEEEEEEcCCccEECCCEEEEEeC----------CCcCcEEEEeC--CChhhcCCCcEEEEEEEeeEeCC
Confidence            5789999999999999987653233344565531          12356665433  2223447899999999987 444


Q ss_pred             C-eEEEEeCCeeeEe
Q psy16421         80 P-SIMWRREGGEMIT   93 (151)
Q Consensus        80 ~-~~~W~~~~~~~~~   93 (151)
                      + .+.|++ +++.+.
T Consensus       181 ~~~v~W~k-~g~~~~  194 (252)
T 3bkj_L          181 DINVKWKI-DGSERQ  194 (252)
T ss_dssp             CCEEEEEE-TTEEEC
T ss_pred             CcEEEEEE-CCeecC
Confidence            3 799999 566654

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.10  E-value=1.2e-10  Score=80.87  Aligned_cols=76  Identities=24%  Similarity=0.384  Sum_probs=56.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|..| .....+.|.|...         ...+|.+.... +....+.+|+.+.|.|.+.|.|.+
T Consensus       184 i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~---------~~~~p~~~~~~-~~~~~~~~G~~v~l~C~~~g~p~p  252 (334)
T 1ry7_B          184 MESVVPSDRGNYTCVVENKFG-SIRQTYTLDVLER---------SPHRPILQAGL-PANQTAVLGSDVEFHCKVYSDAQP  252 (334)
T ss_dssp             ECSCCGGGCCCEEEEEEETTE-EEEEEEEEEEECC---------CCSSCBCCTTC-SCCEEEESSCCEEECCCCBCSSCE
T ss_pred             ECCCCcccCEEEEEEEEeCCC-CEEEEEEEEEecC---------CCCCCceEecC-CCceEEeCCCCEEEEEEEecCCCC
Confidence            467899999999999999987 4556666666411         11233333221 145778899999999999999999


Q ss_pred             eEEEEeC
Q psy16421         81 SIMWRRE   87 (151)
Q Consensus        81 ~~~W~~~   87 (151)
                      .+.|++.
T Consensus       253 ~v~W~~~  259 (334)
T 1ry7_B          253 HIQWLKH  259 (334)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEEC
Confidence            9999993

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.09  E-value=1e-09  Score=71.55  Aligned_cols=87  Identities=21%  Similarity=0.304  Sum_probs=57.8

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCe-eeE-----------------------------ecccC----------
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGG-EMI-----------------------------TNSFN----------   97 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~-~~~-----------------------------~~~~~----------   97 (151)
                      ..+.+.+|+++.|.|.+.+.+.+.+.|++.+. ...                             ....-          
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C   88 (213)
T 3d9a_L            9 ATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFC   88 (213)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             ccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEEE
Confidence            45778899999999999998888999997321 110                             00000          


Q ss_pred             -----------------C---CCCCeeeeCCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceecc
Q psy16421         98 -----------------N---TVPPIVKIPSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMIA  144 (151)
Q Consensus        98 -----------------~---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~~  144 (151)
                                       +   ..+|.+...........|+.+.|.|.+.| .|.+ .++|+|+|..+..
T Consensus        89 ~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~  157 (213)
T 3d9a_L           89 QQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN  157 (213)
T ss_dssp             EECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             eeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcc
Confidence                             0   11344443322222346899999999988 6665 7999999876654

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.09  E-value=7.8e-10  Score=71.53  Aligned_cols=90  Identities=17%  Similarity=0.217  Sum_probs=59.7

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecc---------cC--------------------
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS---------FN--------------------   97 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~---------~~--------------------   97 (151)
                      .+|.+...+  . ..+.+|+++.|.|.+.+.+. .+.|++ ++..+...         ..                    
T Consensus         4 ~~P~i~~~p--~-~~v~~G~~v~L~C~~~~~~~-~~~W~k-~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   78 (198)
T 1ugn_A            4 PKPTLWAEP--G-SVITQGSPVTLRCQGGQETQ-EYRLYR-EKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYG   78 (198)
T ss_dssp             CCCEEEEES--C-SEEETTCCEEEEEECCTTCC-CEEEEE-SSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEeccC--C-CcccCCCcEEEEEEecCCCc-EEEEEE-CCccccccccccccCCcccEEEECCCCHHHCeEEEEEEE
Confidence            567777666  3 47889999999999998765 699999 45444210         00                    


Q ss_pred             --C-C----------------CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421         98 --N-T----------------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus        98 --~-~----------------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                        . .                .+|.+...+ ...+.+|+++.|.|.+.+. .+.+.|+|+|..+.
T Consensus        79 n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~  141 (198)
T 1ugn_A           79 SDTAGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEH  141 (198)
T ss_dssp             ETTTEECCCCCCEEEEEECSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC-----
T ss_pred             CCCCCcccCCccEEEEEcccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccC
Confidence              1 0                022332222 2467899999999999998 78999999987653

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.09  E-value=2.3e-10  Score=79.31  Aligned_cols=106  Identities=13%  Similarity=0.215  Sum_probs=68.5

Q ss_pred             ccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCe
Q psy16421          2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPS   81 (151)
Q Consensus         2 ~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~   81 (151)
                      .++..+|+|.|+|.|.|..+ ..+..+.|.|.             .+|.+...+. ....+.+|+++.|.|.+.+.|.|.
T Consensus       199 ~~~~~~d~G~Y~C~a~n~~~-~~~~~~~l~V~-------------~~P~~~~~~~-~~~~~~~g~~~~l~C~~~g~p~p~  263 (331)
T 3u83_A          199 VPSREAHQQSLACIVNYHMD-RFKESLTLNVQ-------------YEPEVTIEGF-DGNWYLQRMDVKLTCKADANPPAT  263 (331)
T ss_dssp             CCCGGGTTCEEEEEEEETTE-EEEEEEECCEE-------------EEEEEEEECC-CSCCBTTCCCEEEEEEEEEESCCC
T ss_pred             EeccccCCCEEEEEEecCCC-cceeeEEEEEe-------------cCCeEEEecC-CCceEeCCCeEEEEEeCcCCCCCC
Confidence            45688999999999999877 44455555543             4555543332 345577899999999999999998


Q ss_pred             -EEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         82 -IMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        82 -~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                       +.|+++ +..+.... ......+.+..   .+...+.....|.+..
T Consensus       264 ~i~W~~~-~~~~~~~~-~~~~~~L~i~~---~v~~~d~G~Y~C~a~N  305 (331)
T 3u83_A          264 EYHWTTL-NGSLPKGV-EAQNRTLFFKG---PINYSLAGTYICEATN  305 (331)
T ss_dssp             EEEEEET-TBSCCTTE-EEETTEEEECS---CCCGGGCEEEEEEEEE
T ss_pred             EEEEEEC-CCcccccc-eecCcEEEEeC---CCccccCeEEEEEEEe
Confidence             999994 44432211 00111222220   1345677889999864

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.09  E-value=4e-10  Score=72.45  Aligned_cols=116  Identities=12%  Similarity=0.103  Sum_probs=63.6

Q ss_pred             Ccc-ccccCCeEEEEEEEcCCCCCCccceEEEEecccccee-----EEeecCCCCeeEeCCC--CCc---eEeecCCeEE
Q psy16421          1 MTE-VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKL-----YIYTSSMPPDILDYPT--SSD---IMVREGSNVS   69 (151)
Q Consensus         1 i~~-v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-----~~~~~~~~p~~~~~~~--~~~---~~~~~g~~~~   69 (151)
                      |.+ ++.+|+|.|+|.|.|..|. .+..+.+.|.....+..     ....+..+|.+.....  ...   ..+.+|+++.
T Consensus        48 I~~~~~~~D~G~Y~C~a~n~~g~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~  126 (186)
T 1jbj_A           48 LQDFSEVEDSGYYVCYTPASNKN-TYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVL  126 (186)
T ss_dssp             EESCCTTTSCEEEEEECSSCCCC-CCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEE
T ss_pred             ECCCCccccCEEEEEEEEeCCCc-EEEEEEEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEE
Confidence            467 8999999999999999884 33333333321100000     0000001111110000  001   1234899999


Q ss_pred             EEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         70 MRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        70 l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      |.|.+   |.|.+.|++ +++.+.....  ....+.+    ..+...+....+|.+..
T Consensus       127 l~C~~---p~p~i~W~k-~g~~i~~~~~--~~~~L~i----~~v~~~D~G~Y~C~a~N  174 (186)
T 1jbj_A          127 LTCGL---TDKTIKWLK-DGSIISPLNA--TKNTWNL----GNNAKDPRGTYQCQGAK  174 (186)
T ss_dssp             EECSS---SCSCEEEEE-TTEECCCSSC--CSSCCEE----EETTSCCEEEEEEEESS
T ss_pred             EEeeC---CCCeEEEEE-CCEECcccCC--CcceEEE----CCCCcCcCEEEEEEEEc
Confidence            99999   789999999 6666543221  1111222    23566788899999864

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.09  E-value=4.8e-10  Score=73.94  Aligned_cols=37  Identities=27%  Similarity=0.519  Sum_probs=29.9

Q ss_pred             ceeEeecCCcEEEEeeecc-cCCCeeEEEcCCceeccC
Q psy16421        109 QLIGAHEGQQLVLECISEA-YPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g-~p~~~~~W~k~~~~~~~~  145 (151)
                      ....+.+|+.+.|.|.+.| .|.|.++|+|+++.++..
T Consensus       126 ~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~  163 (226)
T 4f80_A          126 VDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPT  163 (226)
T ss_dssp             EEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCC
T ss_pred             ceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCC
Confidence            4456788999999999988 599999999976655543

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.09  E-value=1.5e-10  Score=76.00  Aligned_cols=74  Identities=22%  Similarity=0.345  Sum_probs=52.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC-CC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS-PP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-~~   79 (151)
                      |.+|+.+|+|.|.|.+.|..+ .....+.|+|.             .+|......   ...+..|+.. |.|.+.+. |.
T Consensus        63 I~~v~~~d~G~Y~C~a~n~~~-~~~~~~~ltV~-------------~~P~~~~i~---~~~~~~g~~~-l~C~a~g~~P~  124 (210)
T 1gsm_A           63 VRNASLSAAGTRVCVGSCGGR-TFQHTVQLLVY-------------AFPNQLTVS---PAALVPGDPE-VACTAHKVTPV  124 (210)
T ss_dssp             ECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEE-------------BCCSEEEEE---SSSBCTTCCE-EEEEEEEEBCC
T ss_pred             ECccCcccCceEEEEEEeCCC-ceEEEEEEEEE-------------ecCCCcEEc---cceEEeCCce-EEEEeCCCCCC
Confidence            578999999999999999876 45566676664             455443311   1145567878 99998874 63


Q ss_pred             ----CeEEEEeCCeeeEe
Q psy16421         80 ----PSIMWRREGGEMIT   93 (151)
Q Consensus        80 ----~~~~W~~~~~~~~~   93 (151)
                          +++.|++ |++.+.
T Consensus       125 ~~~~lti~Wlk-~~~~L~  141 (210)
T 1gsm_A          125 DPNALSFSLLV-GGQELE  141 (210)
T ss_dssp             CTTTEEEEEEE-TTEECT
T ss_pred             CCCCcEEEEEE-CCEEcc
Confidence                4899999 677764

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.09  E-value=1.4e-10  Score=78.33  Aligned_cols=100  Identities=15%  Similarity=0.210  Sum_probs=65.9

Q ss_pred             ccccccCCeEEEEEEEcCC-CCCC--ccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCC
Q psy16421          2 TEVSREHMGAYLCIASNGV-PPSV--SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSP   78 (151)
Q Consensus         2 ~~v~~~d~G~Y~C~~~~~~-~~~~--~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~   78 (151)
                      ..+..+|.|.|+|.|.|.. |...  +..+.|.|.             .+|.+.....+....+.+|+.+.|.|.+.|.|
T Consensus       147 ~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~-------------~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P  213 (265)
T 2oz4_A          147 KATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL-------------YGPRLDERDCPGNWTWPENSQQTPMCQAWGNP  213 (265)
T ss_dssp             ECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEE-------------EEEECCGGGSCSEEEEETTCEECCCCCCEEES
T ss_pred             ccccccCCceEEEEEEcCCCCCcccccccEEEEEE-------------eCCccccccCCCccEEcCCCeEEEEeECccCC
Confidence            4567888999999998654 5322  144555553             34444332212456788999999999999999


Q ss_pred             CCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         79 PPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        79 ~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      .|.+.|+++ +..+..   ..         ....+...+.....|.+..
T Consensus       214 ~p~i~W~~~-~~~~~~---~g---------~~~~v~~~d~G~Y~C~a~N  249 (265)
T 2oz4_A          214 LPELKCLKD-GTFPLP---IG---------ESVTVTRDLEGTYLCRARS  249 (265)
T ss_dssp             CCEEEEEET-TTEECC---TT---------SCEECCGGGCEEEEEEEEE
T ss_pred             CCeEEEEEC-CcccCC---CC---------cEEEeehhhCeEEEEEEEC
Confidence            999999995 432111   00         1122556778899999864

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.08  E-value=1.5e-10  Score=76.06  Aligned_cols=78  Identities=21%  Similarity=0.436  Sum_probs=52.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCC--CccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC-
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPS--VSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS-   77 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-   77 (151)
                      |.+++.+|+|.|.|.+.+..+..  ......|.|..         ....+|.+...+  ....+.+|+.+.|.|.+.|. 
T Consensus        85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~---------~~~~~P~i~~~~--~~~~~~~g~~v~L~C~~~g~~  153 (220)
T 1pz5_B           85 MNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSS---------ATTTAPSVYPLV--PGCSDTSGSSVTLGCLVKGYF  153 (220)
T ss_dssp             ECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECS---------SCCBCCEEEEEC--CCSCCSCSSSEEEEEEEEEEB
T ss_pred             EccCCHHHCEEEEEEEecCCcccceECCCEEEEEcc---------CCCCCCeEEEcc--cccccCCCCcEEEEEEEEEEe
Confidence            57899999999999999975421  11345666541         112345554332  12235679999999999886 


Q ss_pred             CCC-eEEEEeCCe
Q psy16421         78 PPP-SIMWRREGG   89 (151)
Q Consensus        78 ~~~-~~~W~~~~~   89 (151)
                      |.| .+.|++++.
T Consensus       154 P~p~~v~W~~~~~  166 (220)
T 1pz5_B          154 PEPVTVKWNYGAL  166 (220)
T ss_dssp             SSCCEEEEGGGTC
T ss_pred             CCCeEEEEecCCc
Confidence            888 999999543

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.08  E-value=2.6e-09  Score=68.60  Aligned_cols=89  Identities=16%  Similarity=0.186  Sum_probs=60.6

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecc-------cC----------------------
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS-------FN----------------------   97 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~-------~~----------------------   97 (151)
                      .+|.+...+  .. .+.+|++++|.|.+.+ +.+.+.|+| +++.+...       ..                      
T Consensus         3 ~~P~i~~~p--~~-~v~~G~~v~L~C~~~~-~~~~~~w~k-~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   77 (188)
T 1oll_A            3 PKPFIWAEP--HF-MVPKEKQVTICCQGNY-GAVEYQLHF-EGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYR   77 (188)
T ss_dssp             CCCEEEEES--CS-EEETTCCEEEEEECCT-TCCEEEEEE-TTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEeec--CC-cCCCCCCEEEEEecCC-CCCEEEEEE-CCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEec
Confidence            467776666  33 7889999999999876 457899999 45443210       00                      


Q ss_pred             ---------------C---CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421         98 ---------------N---TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus        98 ---------------~---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                                     +   ..+|.+...+ ...+.+|+++.|.|.+.+ +.+.+.|+|+|..+
T Consensus        78 ~~~~~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~  138 (188)
T 1oll_A           78 VGELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSS  138 (188)
T ss_dssp             ETTEECCCCCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSC
T ss_pred             CCCCCCCCCCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCccc
Confidence                           0   0134444333 345789999999999876 45689999997644

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.08  E-value=1.5e-10  Score=75.62  Aligned_cols=75  Identities=20%  Similarity=0.498  Sum_probs=51.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC-CC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS-PP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-~~   79 (151)
                      |.+++.+|+|.|.|.+.|..  .......|.|..         ....+|.+...+  ....+.+|+.+.|.|.+.|. |.
T Consensus        82 I~~v~~~D~G~Y~C~~~~~~--~~~~~~~l~V~~---------~~~~~P~v~~~~--~~~~~~~g~~v~L~C~~~g~~P~  148 (210)
T 3d9a_H           82 LNSVTTEDTATYYCANWDGD--YWGQGTLVTVSA---------AKTTPPSVYPLA--PGSAAQTNSMVTLGCLVKGYFPE  148 (210)
T ss_dssp             ECSCCGGGCEEEEEEETTSS--CBCCCEEEEECC---------CCCBCCEEEEEC--CTTSCCCSSEEEEEEEEEEEBSS
T ss_pred             ECCCCcccCEEEEEEEecCc--ccccceEEEecc---------CCCCCCEEEEec--CCcccccCCcEEEEEEEeeEecC
Confidence            57899999999999998863  222335566531         112345554332  12345679999999999886 77


Q ss_pred             C-eEEEEeCC
Q psy16421         80 P-SIMWRREG   88 (151)
Q Consensus        80 ~-~~~W~~~~   88 (151)
                      | .+.|++++
T Consensus       149 p~~v~W~~~~  158 (210)
T 3d9a_H          149 PVTVTWNSGS  158 (210)
T ss_dssp             CCEEEEGGGT
T ss_pred             CcEEEEeeCC
Confidence            7 99999943

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.07  E-value=6.4e-10  Score=77.39  Aligned_cols=74  Identities=19%  Similarity=0.284  Sum_probs=52.1

Q ss_pred             CccccccCCeEEEEEEEcC--CCCCC---ccceEEEEeccccceeEEeecCCCC----eeEeCCCCCceEeecCCeEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNG--VPPSV---SKRIMLIVQCQYFSKLYIYTSSMPP----DILDYPTSSDIMVREGSNVSMR   71 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~--~~~~~---~~~~~l~v~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~g~~~~l~   71 (151)
                      |.+++.+|+|.|+|.|.|.  .|...   +..+.|.|.             .+|    .+. .+  ....+.+|+.+.|.
T Consensus       186 I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~-------------~~~~~~~~~~-~~--~~~~v~~G~~~~l~  249 (329)
T 3oq3_B          186 IHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVI-------------PSQDHRFKLI-LD--PKINVTIGEPANIT  249 (329)
T ss_dssp             ECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEE-------------CCCCCCEEEE-CC--SEEEECTTSCEEEE
T ss_pred             EeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEE-------------CCCCCCCcee-cC--CeeEEecCCCEEEE
Confidence            5689999999999999987  55221   112445443             222    222 33  45788899999999


Q ss_pred             eeecCCC---CC-eEEEEeCCeee
Q psy16421         72 CAASGSP---PP-SIMWRREGGEM   91 (151)
Q Consensus        72 C~~~g~~---~~-~~~W~~~~~~~   91 (151)
                      |.+.+.|   .+ .+.|++ +++.
T Consensus       250 C~~~g~p~~~~~i~v~W~~-~g~~  272 (329)
T 3oq3_B          250 CTAVSTSLLVDDVLIDWEN-PSGW  272 (329)
T ss_dssp             EEEEETTCCTTCCEEEEEC-TTSC
T ss_pred             EEEEECCCCCCCcEEEEEE-CCee
Confidence            9999987   67 889999 4544

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.07  E-value=7.4e-10  Score=74.26  Aligned_cols=107  Identities=16%  Similarity=0.210  Sum_probs=66.7

Q ss_pred             CccccccCCeEEEEEEEcCCCC-CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP-SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++++|+|.|+|.+.|..+. ..+..+.|.|..          ...+|.+...+   ...+.+|+++.|.|.+.+. .
T Consensus        64 I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~----------~~~~P~i~~~p---~~~v~~G~~vtL~C~~~~~-~  129 (242)
T 1p6f_A           64 IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTE----------MYDTPTLSVHP---GPEVISGEKVTFYCRLDTA-T  129 (242)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEEC----------CSCCCEEEEES---CSEEETTCEEEEEEECTTS-C
T ss_pred             ecCCCcccCeEEEEEEecCCccccCCcceEEEeec----------ccCCCceEccC---CCccCCCCcEEEEEecCCC-C
Confidence            5689999999999999886432 345666776641          12356666544   3467899999999998764 5


Q ss_pred             CeEEEEeCCeeeEecccC-CCCCCeeeeCCceeEeecCCcEEEEeeec
Q psy16421         80 PSIMWRREGGEMITNSFN-NTVPPIVKIPSQLIGAHEGQQLVLECISE  126 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~g~~~~l~C~~~  126 (151)
                      +.+.|+| +++.+..... ......|.+    ..+...+.....|.+.
T Consensus       130 ~~~~w~k-~g~~~~~~~~~~~~~~~l~I----~~v~~~d~G~Y~C~a~  172 (242)
T 1p6f_A          130 SMFLLLK-EGRSSHVQRGYGKVQAEFPL----GPVTTAHRGTYRCFGS  172 (242)
T ss_dssp             SEEEEEE-CSSSCEEEEEECSSEEEEEE----EECCGGGCEEEEEEEE
T ss_pred             CEEEEEE-CCCccCccccCCCceEEEEe----CCCccccCEEEEEEEE
Confidence            6899999 4543321000 001111221    1244566677788764

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.07  E-value=1.2e-09  Score=70.69  Aligned_cols=85  Identities=16%  Similarity=0.189  Sum_probs=54.5

Q ss_pred             CceEeecCCeEEEEeeecCCCC-----CeEEEEeCCeeeEecccC---------------------------------CC
Q psy16421         58 SDIMVREGSNVSMRCAASGSPP-----PSIMWRREGGEMITNSFN---------------------------------NT   99 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~-----~~~~W~~~~~~~~~~~~~---------------------------------~~   99 (151)
                      ..+.+.+|+.+.|.|.+.+.+.     +.+.|++.+++......+                                 ..
T Consensus        10 ~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   89 (202)
T 3bp6_B           10 EVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICG   89 (202)
T ss_dssp             SEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             cCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeC
Confidence            4567889999999999998876     889999933322111100                                 00


Q ss_pred             ---C--CCeeee--C---C--ceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421        100 ---V--PPIVKI--P---S--QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       100 ---~--~p~~~~--~---~--~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                         .  ...+.+  .   +  ....+.+|+.+.|.|.+.|.|.|.+.|++++..+
T Consensus        90 ~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~  144 (202)
T 3bp6_B           90 AAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPA  144 (202)
T ss_dssp             TEEEEEEEEEEEEBCCCCEEEEEEECTTTCCEEEEEEEEEBSCCEEEETTCCSCC
T ss_pred             CCcceEEEEEEecCCCCcccEEEEecCCCCeEEEEEEccccCCceEEEEeCCCCc
Confidence               0  000100  0   0  1113468999999999999999999999987643

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.07  E-value=1.4e-10  Score=76.35  Aligned_cols=79  Identities=19%  Similarity=0.428  Sum_probs=52.4

Q ss_pred             CccccccCCeEEEEEEEcCCCC----CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP----SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g   76 (151)
                      |.+++.+|+|.|.|.+.+..+.    .......|.|..         ....+|.+...+  ....+.+|+.+.|.|.+.|
T Consensus        85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~---------~~~~~P~i~~~~--~~~~~~~g~~v~L~C~~~g  153 (222)
T 1q9r_B           85 MNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSA---------AKTTPPSVYPLA--PGSAAQTNSMVTLGCLVKG  153 (222)
T ss_dssp             ECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECS---------SCCBCCEEEEEC--CCSCCCCSSEEEEEEEEEE
T ss_pred             ECcCCcccCeEEEEEEeccCCcccceEeCCceEEEecc---------CCCCCCeEEEcc--ccccccCCCcEEEEEEEcc
Confidence            5789999999999999987541    122345666541         111345554332  1123557999999999988


Q ss_pred             C-CCC-eEEEEeCCeee
Q psy16421         77 S-PPP-SIMWRREGGEM   91 (151)
Q Consensus        77 ~-~~~-~~~W~~~~~~~   91 (151)
                      . |.| .+.|++ +++.
T Consensus       154 ~~P~p~~v~W~~-~g~~  169 (222)
T 1q9r_B          154 YFPEPVTVTWNS-GSLS  169 (222)
T ss_dssp             EBSSCCEEEEGG-GTBC
T ss_pred             EECCCCEEEEec-CCeE
Confidence            4 877 999999 4543

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.07  E-value=3.8e-11  Score=79.48  Aligned_cols=81  Identities=15%  Similarity=0.316  Sum_probs=51.0

Q ss_pred             CccccccCCeEEEEEEEcCCCC--CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP--SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSP   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~   78 (151)
                      |.+++.+|+|.|.|.+.|..+.  .....+.|.|..         ....+|.+...+  ......+|+.+.|.|.+.|.+
T Consensus        95 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~---------~~~~~p~v~~~~--~~~~~~~g~~v~L~C~~~g~~  163 (234)
T 2j6e_L           95 ISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLG---------QPKAAPSVTLFP--PSSEELQANKATLVCLISDFF  163 (234)
T ss_dssp             EESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCC---------CCCCCCCCCEEC--CCHHHHTTSCCCEEECCCBCS
T ss_pred             ECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEec---------CCCCCCcccccC--CChhHhcCCceEEEEEEEEEc
Confidence            5689999999999999998761  112223333320         011345554322  122334688999999998854


Q ss_pred             C--CeEEEEeCCeeeEe
Q psy16421         79 P--PSIMWRREGGEMIT   93 (151)
Q Consensus        79 ~--~~~~W~~~~~~~~~   93 (151)
                      +  +.+.|++ +++.+.
T Consensus       164 p~~~~v~W~k-~g~~l~  179 (234)
T 2j6e_L          164 PGAVTVAWKA-DGAPVK  179 (234)
T ss_dssp             SCCCEEEEEE-TTEECC
T ss_pred             CCceEEEEEE-CCEECC
Confidence            3  4899999 666654

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.07  E-value=1.2e-09  Score=70.85  Aligned_cols=90  Identities=18%  Similarity=0.243  Sum_probs=60.8

Q ss_pred             CCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEec--------cc---C-----------------
Q psy16421         46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITN--------SF---N-----------------   97 (151)
Q Consensus        46 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~--------~~---~-----------------   97 (151)
                      ..+|.+...+  . ..+.+|+++.|.|.+.+ +.+.+.|+|+ ++.+..        ..   .                 
T Consensus         6 ~~~P~i~~~p--~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~-g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C   80 (201)
T 1nkr_A            6 HRKPSLLAHP--G-PLVKSEETVILQCWSDV-MFEHFLLHRE-GMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRC   80 (201)
T ss_dssp             -CCCEEEEES--C-SEEETTCCEEEEEEESS-CCSEEEEEEE-SSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEE
T ss_pred             CCCCeEEEEc--C-CccCCCCcEEEEEeccC-CCCEEEEEEC-CCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEE
Confidence            3567777665  3 57889999999999975 7789999994 432210        00   0                 


Q ss_pred             ---C---------------------CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421         98 ---N---------------------TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus        98 ---~---------------------~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                         .                     ..+|.+...+. ..+.+|+++.|.|.+.+ +.+.+.|+|+|..+
T Consensus        81 ~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~  147 (201)
T 1nkr_A           81 YGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAH  147 (201)
T ss_dssp             EEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSS
T ss_pred             eEecCCCCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCccc
Confidence               0                     01233333332 35789999999999987 56789999997654

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.06  E-value=7.5e-10  Score=74.43  Aligned_cols=84  Identities=13%  Similarity=0.161  Sum_probs=53.6

Q ss_pred             CccccccCCeEEEEEEEcC-----------CCCCCccceEEEEecccccee--EEeecCCCCeeEeCCCCCceEeecCCe
Q psy16421          1 MTEVSREHMGAYLCIASNG-----------VPPSVSKRIMLIVQCQYFSKL--YIYTSSMPPDILDYPTSSDIMVREGSN   67 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~-----------~~~~~~~~~~l~v~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~g~~   67 (151)
                      |.+++.+|+|.|.|.+.|.           ..........|.|........  ..-....++.+...+  ..+.+.+|++
T Consensus        89 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~G~~  166 (256)
T 3juy_B           89 LRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAP--GTLSLSPGER  166 (256)
T ss_dssp             ECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEEC--SEEEECTTSC
T ss_pred             ECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecC--CeEEEeCCCC
Confidence            5789999999999999986           111233445566642100000  000000134455544  5678889999


Q ss_pred             EEEEeeecCCCC-CeEEEEe
Q psy16421         68 VSMRCAASGSPP-PSIMWRR   86 (151)
Q Consensus        68 ~~l~C~~~g~~~-~~~~W~~   86 (151)
                      +.|.|.+.+.+. +.+.|++
T Consensus       167 v~L~C~~~~~~~~~~v~W~k  186 (256)
T 3juy_B          167 ATFSCRSSHSIRSRRVAWYQ  186 (256)
T ss_dssp             EEEEEEESSCCTTCCEEEEE
T ss_pred             EEEEEEECCCcCCeeEEEEE
Confidence            999999988775 8999998

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.05  E-value=7.2e-10  Score=70.46  Aligned_cols=93  Identities=13%  Similarity=0.120  Sum_probs=61.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|.|.+.|..+   ...+.|.|..          ....|.+....          ....|.|.+.+.|.|
T Consensus        64 I~~v~~~DsG~Y~C~~~n~~~---~~~~~L~V~~----------~~~~p~i~~~~----------~~~~L~C~~~~~p~p  120 (171)
T 1ccz_A           64 IYNLTSSDEDEYEMESPNITD---TMKFFLYVLE----------MVSKPMIYWEC----------SNATLTCEVLEGTDV  120 (171)
T ss_dssp             ECSCCGGGCEEEEEECTTCCS---CEEEEEEEEC----------CCCCCEEEEET----------TTTEEEEECSSCSSC
T ss_pred             ECCCChhhCceEEEEEeCCCC---cEEEEEEEEC----------cCCCCEEEEec----------CCcEEEEEeCCCCCc
Confidence            578999999999999988766   4556666641          11234443322          113799999998999


Q ss_pred             eEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         81 SIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      .+.|++ +++.+....    ...+.      ....++....+|.+..
T Consensus       121 ~i~W~~-~~~~l~~~~----~~~l~------~~~~~~~g~Y~C~a~N  156 (171)
T 1ccz_A          121 ELKLYQ-GKEHLRSLR----QKTMS------YQWTNLRAPFKCKAVN  156 (171)
T ss_dssp             EEEEEE-TTEEEEEES----SSEEE------EECSCCSSCEEEEEEE
T ss_pred             EEEEEE-CCEECcCCc----ceEEE------EeccCCCceEEEEEEc
Confidence            999999 666665321    11121      1235777789999864

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.05  E-value=7e-10  Score=76.66  Aligned_cols=76  Identities=21%  Similarity=0.335  Sum_probs=55.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCC----CccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPS----VSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g   76 (151)
                      |.+++.+|+|.|+|.|.|..+..    .+..+.|.|.          ....+|.+...+.   ..+.+|+++.|.|.+..
T Consensus       178 i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~----------~~~~~p~i~~~~~---~~v~~G~~v~L~C~~~~  244 (316)
T 3vh8_G          178 IGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVT----------GPYEKPSLSAQPG---PKVQAGESVTLSCSSRS  244 (316)
T ss_dssp             ECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEE----------CSSCCCEEEEESC---SCCCTTSCCEEEEEESS
T ss_pred             ECCCChhhCceEEEEEecCCCCccccCCCCCEEEEec----------CCCCCCeEEeCCC---CeecCCCcEEEEEECCC
Confidence            56789999999999999987731    2455666663          1235666666542   35678999999999974


Q ss_pred             CCCCeEEEEeCCeee
Q psy16421         77 SPPPSIMWRREGGEM   91 (151)
Q Consensus        77 ~~~~~~~W~~~~~~~   91 (151)
                       +.+.+.|+++ +..
T Consensus       245 -~~~~~~W~k~-g~~  257 (316)
T 3vh8_G          245 -SYDMYHLSRE-GGA  257 (316)
T ss_dssp             -CCSEEEEEET-TSS
T ss_pred             -CCcEEEEEEC-CCc
Confidence             7889999994 443

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.05  E-value=1.6e-10  Score=75.55  Aligned_cols=80  Identities=13%  Similarity=0.246  Sum_probs=51.6

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~~   79 (151)
                      |.+++.+|+|.|+|.|.|..+. ......+.+.         ..+..+|.+...+.  .....+|+.+.|.|.+.| .|.
T Consensus        72 I~~~~~~D~G~Y~C~a~~~~~~-~~~~~~v~~~---------~~~~~~P~v~~~~~--~~~~~~g~~~~L~C~~~g~~P~  139 (207)
T 2vol_A           72 IMHQDWLNGKEFKCRVNSAAFP-APIEKTISKT---------KGRPKAPQVYTLPP--PKEQMAKDKVSLTCMITDFFPE  139 (207)
T ss_dssp             CCHHHHHTTCCEEEEEECTTCS-SCEEEEECCC---------CCCCBCCEEEEECC--CTGGGSSSEEEEEEEEEEEBSS
T ss_pred             EehhHcCCCCEEEEEEEccCCC-CceEEEeccC---------CCCCcCCeEEEeCC--CHHHhcCCceEEEEEEeeEECC
Confidence            5677889999999999998773 2111122110         13345777755442  112235899999999988 454


Q ss_pred             -CeEEEEeCCeeeEe
Q psy16421         80 -PSIMWRREGGEMIT   93 (151)
Q Consensus        80 -~~~~W~~~~~~~~~   93 (151)
                       +.+.|++ +++.+.
T Consensus       140 ~~~v~W~k-~g~~l~  153 (207)
T 2vol_A          140 DITVEWES-NGQPAE  153 (207)
T ss_dssp             CCEEEEEE-TTEECS
T ss_pred             CCEEEEEE-CCEecc
Confidence             4899999 566543

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.04  E-value=7.8e-11  Score=81.08  Aligned_cols=95  Identities=14%  Similarity=0.193  Sum_probs=63.6

Q ss_pred             CCCCeeEeCCCCCceEeecCCeEEEEeeecCC-CCCeEEEEeCCeeeEecccC---------------------------
Q psy16421         46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGS-PPPSIMWRREGGEMITNSFN---------------------------   97 (151)
Q Consensus        46 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-~~~~~~W~~~~~~~~~~~~~---------------------------   97 (151)
                      ..+|.|....   ...+.+|+.+.|.|.+.+. |.+.+.|++ +++.+.....                           
T Consensus         5 ~~~P~~~~~~---~~~v~~G~~v~l~C~~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   80 (317)
T 2y25_A            5 FTGPHFVEYL---SWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVIL   80 (317)
T ss_dssp             SSCCEEEEEE---EEEEETTTEEEEEEEEESCCTTCEEEEEE-TTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEE
T ss_pred             cCCCcEeeee---eEEECCCCeEEEEEEEcCCCCCCEEEEEE-CCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEE
Confidence            4578787543   4788899999999998886 779999999 5555543221                           


Q ss_pred             -CCC-------------CCeeeeCCceeEeecCCcEEEEeeecc----------cCCCeeEEEcCCceecc
Q psy16421         98 -NTV-------------PPIVKIPSQLIGAHEGQQLVLECISEA----------YPKSVNYWTREKGDMIA  144 (151)
Q Consensus        98 -~~~-------------~p~~~~~~~~~~~~~g~~~~l~C~~~g----------~p~~~~~W~k~~~~~~~  144 (151)
                       +..             +|.+...+....+..|+.+.|.|.+.+          .|.+.+.|+|+|..+..
T Consensus        81 ~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~  151 (317)
T 2y25_A           81 KDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY  151 (317)
T ss_dssp             ESSSCEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCC
T ss_pred             ECCCCcEEEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCC
Confidence             000             000000111223457888888888877          78999999999876654

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.04  E-value=3.1e-10  Score=78.02  Aligned_cols=108  Identities=13%  Similarity=0.181  Sum_probs=65.4

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.++..+|.|.|+|.|.|..+. ......+.           +.+..+|.+...+. ....+.+|+.+.|.|.+.|.|.|
T Consensus       176 i~~~~~~d~g~Y~C~a~n~~~~-~~~~~~~~-----------l~V~~~P~~~~~~~-~~~~~~~g~~v~l~C~~~g~P~p  242 (308)
T 4fom_A          176 LFPTRFARGRRITCVVKHPALE-KDIRYSFI-----------LDIQYAPEVSVTGY-DGNWFVGRKGVNLKCNADANPPP  242 (308)
T ss_dssp             ECCCGGGTTCEEEEEEECTTCS-SCEEEEEE-----------CCCCEEEEECCBCC-CSCEETTCCSCEEECCEEEESCE
T ss_pred             EEeeeecCCccEEEEEEccCCC-CceEEeEE-----------EEEecCCeeEEccc-ceeeeeccccEEEEEEEecCCCC
Confidence            3567889999999999998763 22222222           33345666654442 34566778999999999999988


Q ss_pred             -eEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeec
Q psy16421         81 -SIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISE  126 (151)
Q Consensus        81 -~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~  126 (151)
                       .+.|+++ +..+...........+.+.    .+...+.....|.|.
T Consensus       243 ~~v~W~k~-~~~~~~~~~~~~~~~l~i~----~v~~~d~G~Y~C~A~  284 (308)
T 4fom_A          243 FKSVWSRL-DGQWPDGLLASDNTLHFVH----PLTFNYSGVYICKVT  284 (308)
T ss_dssp             EEEECCBS-SSCCCSSCBCSTTEEECCS----CCCSCCCSEEEEEEE
T ss_pred             cEEEEEEC-CeECCCcEEEcCCeEEEEC----CCChhhCEEEEEEEE
Confidence             6999994 4443321101101111111    133455668889875

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.04  E-value=5.9e-10  Score=72.35  Aligned_cols=36  Identities=19%  Similarity=0.370  Sum_probs=30.2

Q ss_pred             CceeEeecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      .....+..|..+.+.|.+.|.|+|.++|+|++..+.
T Consensus       125 ~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~  160 (218)
T 4frw_A          125 GPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTT  160 (218)
T ss_dssp             CSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEE
T ss_pred             eeeeeeeeccccceeeeccCCcCceEEEEECCcccc
Confidence            444556789999999999999999999999876554

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.04  E-value=1.4e-10  Score=81.12  Aligned_cols=86  Identities=13%  Similarity=0.225  Sum_probs=46.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCC---ccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeec--
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSV---SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAAS--   75 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~---~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~--   75 (151)
                      |.+++.+|+|.|+|.|.|..+...   +..+.|.|....       ....+|.+..........+.+|+.+.|.|.+.  
T Consensus       181 i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~-------~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~  253 (349)
T 4dep_C          181 FLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSP-------KNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFS  253 (349)
T ss_dssp             EESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCG-------GGCCSCEEC----------------CCCEEEEEC
T ss_pred             EeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccC-------CCCCCCeEecCCCceeEEEecCCcEEEEEEEEEc
Confidence            568899999999999999863232   445555553110       00125666554421112677899999999988  


Q ss_pred             --CCCCCeEEEEeCCeeeEec
Q psy16421         76 --GSPPPSIMWRREGGEMITN   94 (151)
Q Consensus        76 --g~~~~~~~W~~~~~~~~~~   94 (151)
                        +.|.|.+.|++ +++.+..
T Consensus       254 ~~g~p~p~v~W~~-~g~~l~~  273 (349)
T 4dep_C          254 FLMDSRNEVWWTI-DGKKPDD  273 (349)
T ss_dssp             CCTTCCCEEEEES-SCC----
T ss_pred             cCCCCCCEEEEEE-CCEEccc
Confidence              67899999999 5665543

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.04  E-value=7.7e-10  Score=74.37  Aligned_cols=84  Identities=18%  Similarity=0.177  Sum_probs=53.3

Q ss_pred             CccccccCCeEEEEEEEcCCCC---CCccceEEEEecccccee-EEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP---SVSKRIMLIVQCQYFSKL-YIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g   76 (151)
                      |.+++.+|+|.|.|.+.|..+.   .......|.|........ ....+..++.+...+  ....+.+|+++.|.|.+.+
T Consensus        90 I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p--~~~~v~~G~~v~L~C~~~~  167 (257)
T 3gkz_A           90 LKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSP--AIMSASPGEKVTLTCSASS  167 (257)
T ss_dssp             ECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSC--SEEEECTTCCEEEEEEESS
T ss_pred             ECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCC--ceEEEeCCCcEEEEEEEcc
Confidence            5789999999999999997321   123345565541100000 000001234555544  5678889999999999999


Q ss_pred             CCCC-eEEEEe
Q psy16421         77 SPPP-SIMWRR   86 (151)
Q Consensus        77 ~~~~-~~~W~~   86 (151)
                      .+.+ .+.|++
T Consensus       168 ~~~~~~v~W~k  178 (257)
T 3gkz_A          168 SVSSSHLYWYQ  178 (257)
T ss_dssp             CCCGGGEEEEE
T ss_pred             CccceEEEEEE
Confidence            8877 899998

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.03  E-value=2.2e-10  Score=66.57  Aligned_cols=47  Identities=19%  Similarity=0.385  Sum_probs=41.5

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccCC
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG  146 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~~  146 (151)
                      .||.|...+....+.+|+++.|.|.+.|.|.|.+.|+|||..+....
T Consensus         4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~   50 (100)
T 3knb_A            4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQE   50 (100)
T ss_dssp             EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTG
T ss_pred             CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeec
Confidence            57888888888999999999999999999999999999987775543

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.03  E-value=1e-09  Score=71.86  Aligned_cols=83  Identities=16%  Similarity=0.182  Sum_probs=58.2

Q ss_pred             CceEeecC--CeEEEEeeecCCCCCeEEEEeC--CeeeEecccC------------------------------------
Q psy16421         58 SDIMVREG--SNVSMRCAASGSPPPSIMWRRE--GGEMITNSFN------------------------------------   97 (151)
Q Consensus        58 ~~~~~~~g--~~~~l~C~~~g~~~~~~~W~~~--~~~~~~~~~~------------------------------------   97 (151)
                      ..+.+.+|  +.+.|.|.+.+ |.+.+.|++.  ++..+.....                                    
T Consensus        15 ~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~   93 (213)
T 2x1w_L           15 GVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSI   93 (213)
T ss_dssp             EEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEECC
T ss_pred             eEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEEEE
Confidence            46778899  99999999987 7789999884  4554332110                                    


Q ss_pred             -----CC--CCCeeeeC-CceeEeecCCcEEEEeeecccCC--CeeEEEcCCce
Q psy16421         98 -----NT--VPPIVKIP-SQLIGAHEGQQLVLECISEAYPK--SVNYWTREKGD  141 (151)
Q Consensus        98 -----~~--~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~k~~~~  141 (151)
                           +.  .+|.+... +..+.+.+|+++.|.|.+.|.|.  +.+.|+++|..
T Consensus        94 ~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~  147 (213)
T 2x1w_L           94 MYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSK  147 (213)
T ss_dssp             CEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSS
T ss_pred             EEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCc
Confidence                 00  12223332 34447899999999999998654  46999998765

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.02  E-value=7.7e-10  Score=73.97  Aligned_cols=85  Identities=18%  Similarity=0.291  Sum_probs=51.8

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccc---eeE---EeecCCCCeeEeCCCCCceEeecCCeEEEEeee
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFS---KLY---IYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA   74 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~---~~~---~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~   74 (151)
                      |.+++.+|+|.|.|.+.|..+........|.|......   ...   ......++.+...+  ....+.+|+++.|.|.+
T Consensus        78 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~G~~v~L~C~~  155 (250)
T 3esu_F           78 ISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQS--GPELVKPGASVKISCKD  155 (250)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEEC--CCEEECTTCCEEEEEEC
T ss_pred             EccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecC--CceEEcCCceEEEEEEe
Confidence            57899999999999999876643444556666421000   000   00000112222223  45678899999999999


Q ss_pred             cCCC--CCeEEEEeC
Q psy16421         75 SGSP--PPSIMWRRE   87 (151)
Q Consensus        75 ~g~~--~~~~~W~~~   87 (151)
                      .+.+  .+.+.|++.
T Consensus       156 ~~~~~~~~~v~W~k~  170 (250)
T 3esu_F          156 SGYAFSSSWMNWVKQ  170 (250)
T ss_dssp             CSTTGGGSEEEEEEE
T ss_pred             cCCcccCCEEEEEEE
Confidence            8876  789999984

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.02  E-value=1.6e-09  Score=70.68  Aligned_cols=86  Identities=15%  Similarity=0.269  Sum_probs=57.0

Q ss_pred             ceEeecCCeEEEEeeecCCCCCeEEEEeCC--eeeE----------------------------ecccC-----------
Q psy16421         59 DIMVREGSNVSMRCAASGSPPPSIMWRREG--GEMI----------------------------TNSFN-----------   97 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~--~~~~----------------------------~~~~~-----------   97 (151)
                      .+.+.+|+++.|.|.+.+.+.+.+.|++.+  ..+.                            ....-           
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   88 (213)
T 3mj8_L            9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQ   88 (213)
T ss_dssp             EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEE
Confidence            456788999999999999999999999821  1110                            00000           


Q ss_pred             ------------------CC----CCCeeeeCCceeEeecCCcEEEEeeeccc-CC-CeeEEEcCCceecc
Q psy16421         98 ------------------NT----VPPIVKIPSQLIGAHEGQQLVLECISEAY-PK-SVNYWTREKGDMIA  144 (151)
Q Consensus        98 ------------------~~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~k~~~~~~~  144 (151)
                                        +.    .+|.+...+....+.+|+.+.|.|.+.|. |+ +.++|+|+|..+..
T Consensus        89 ~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  159 (213)
T 3mj8_L           89 SWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQ  159 (213)
T ss_dssp             EEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             eccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCC
Confidence                              01    23444433333334479999999999985 44 38999999877643

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.02  E-value=3.5e-10  Score=74.45  Aligned_cols=80  Identities=16%  Similarity=0.242  Sum_probs=51.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~~   79 (151)
                      |.+++.+|+|.|+|.+.|..+. ......+...         +.+..+|.+...+.  .....+|+.+.|.|.+.| .|.
T Consensus        80 I~~~~~~D~g~Y~C~~~~~~~~-~~~~~~v~~~---------~~~~~~P~v~~~~~--~~~~~~g~~~~L~C~~~g~~P~  147 (218)
T 2rgs_A           80 IQHQDWMSGKEFKCKVNNKDLP-SPIERTISKI---------KGLVRAPQVYILPP--PAEQLSRKDVSLTCLVVGFNPG  147 (218)
T ss_dssp             CCHHHHHTTCCEEEEEEETTCS-SCEEEEECCC---------CCCCBCCEEEEECC--CGGGTTSSEEEEEEEEEEEBSS
T ss_pred             EcHHHcCCCCeEEEEEECCcCC-CcceEEEeec---------CCCCCCCEEEEECC--ChHHhcCCceEEEEEEEeeeCC
Confidence            5678889999999999998652 2111111100         13345676654432  122235899999999988 566


Q ss_pred             C-eEEEEeCCeeeEe
Q psy16421         80 P-SIMWRREGGEMIT   93 (151)
Q Consensus        80 ~-~~~W~~~~~~~~~   93 (151)
                      + .+.|++ +++.+.
T Consensus       148 ~~~v~W~k-~g~~~~  161 (218)
T 2rgs_A          148 DISVEWTS-NGHTEE  161 (218)
T ss_dssp             CCEEEEEE-TTEEEC
T ss_pred             CcEEEEEE-CCEecc
Confidence            5 899999 565553

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.02  E-value=2.8e-09  Score=69.43  Aligned_cols=30  Identities=23%  Similarity=0.563  Sum_probs=26.5

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~   87 (151)
                      ..+.+.+|+++.|.|.+.+.+.+.+.|++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~   37 (210)
T 1lk3_L            8 PALTVSPGEKLTISCKASESVTSRMHWYQQ   37 (210)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEEE
T ss_pred             CcEEEcCCCCEEEEeeCCCccCCCEEEEEE
Confidence            467788999999999999988889999983

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.02  E-value=1.5e-09  Score=71.41  Aligned_cols=89  Identities=15%  Similarity=0.191  Sum_probs=62.6

Q ss_pred             CceEeecCCeEEEEeeecCCCC-CeEEEEeCCeee------------------Ee----------ccc-C----------
Q psy16421         58 SDIMVREGSNVSMRCAASGSPP-PSIMWRREGGEM------------------IT----------NSF-N----------   97 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~-~~~~W~~~~~~~------------------~~----------~~~-~----------   97 (151)
                      ..+.+.+|+++.|.|.+.+.+. +.+.|++.+...                  +.          ... .          
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~~~   87 (231)
T 2pet_A            8 PLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVG   87 (231)
T ss_dssp             SEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCCGG
T ss_pred             CcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccCcc
Confidence            4577889999999999999884 899999733220                  00          010 0          


Q ss_pred             ------------------------C---CCCCeeeeCCceeEeecCCcE-EEEeee-cccCCCeeEEEcCCceeccCC
Q psy16421         98 ------------------------N---TVPPIVKIPSQLIGAHEGQQL-VLECIS-EAYPKSVNYWTREKGDMIANG  146 (151)
Q Consensus        98 ------------------------~---~~~p~~~~~~~~~~~~~g~~~-~l~C~~-~g~p~~~~~W~k~~~~~~~~~  146 (151)
                                              +   ...|.+...+....+.+|+.+ .|.|.+ .|.|.|.+.|+|+|..+....
T Consensus        88 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~  165 (231)
T 2pet_A           88 DERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPV  165 (231)
T ss_dssp             GCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCS
T ss_pred             cCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcccc
Confidence                                    1   112444555555566789988 999999 899999999999987665443

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.02  E-value=1.5e-09  Score=69.26  Aligned_cols=83  Identities=16%  Similarity=0.169  Sum_probs=58.5

Q ss_pred             ceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEec------------------------c--cC---------------
Q psy16421         59 DIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITN------------------------S--FN---------------   97 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~------------------------~--~~---------------   97 (151)
                      .+.+.+|+++.|.|.+.+.+.+.+.|++++...+..                        .  ..               
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            457789999999999999899999999954321110                        0  00               


Q ss_pred             -----CC-CCC-----eeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421         98 -----NT-VPP-----IVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus        98 -----~~-~~p-----~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                           .. ...     .+.. +....+.+|+++.|.|.+.+.|.|.+.|++++..+
T Consensus        84 ~C~~~~~~~~~~l~V~~~~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~  138 (184)
T 2ny1_B           84 ICEVEDQKEEVQLLVFGLTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN  138 (184)
T ss_dssp             EEEETTEEEEEEEEEEEEEE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE
T ss_pred             EEEEEcCCCcEEEEEEEecC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc
Confidence                 00 000     1112 33456789999999999999999999999987654

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.02  E-value=4.9e-10  Score=65.92  Aligned_cols=48  Identities=19%  Similarity=0.344  Sum_probs=42.2

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccCC
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG  146 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~~  146 (151)
                      ..||.|...+..+.+.+|+++.|.|.+.|.|.|.++|+|||..+..+.
T Consensus        11 ~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~   58 (107)
T 3knb_B           11 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASE   58 (107)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCS
T ss_pred             CCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECccccccee
Confidence            457889888889999999999999999999999999999987775443

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.01  E-value=1.4e-09  Score=69.64  Aligned_cols=93  Identities=18%  Similarity=0.235  Sum_probs=59.0

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeee-cCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA-SGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~~~   79 (151)
                      |.+++.+|+|.|.|.+.+..  .....+.|.|.          .....|.+.          ..+..+.|.|.+ .| |.
T Consensus        73 I~~v~~~D~G~Y~C~v~~~~--~~~~~~~L~V~----------~~~~~P~i~----------~~~~~v~L~C~~~~g-p~  129 (180)
T 2dru_A           73 IYNVSKEDRGDYYMRMLHET--EDQWKITMEVY----------EMVSKPMIY----------WECSNATLTCEVLEG-TD  129 (180)
T ss_dssp             ECSCCGGGCEEEEEEEESSS--EEEEEEEEEEE----------CCCCCCEEE----------EEGGGTEEEEECSSC-TT
T ss_pred             EcCCCHHHCeEEEEEEEcCC--eEEEEEEEEEE----------CCCCCCEEE----------ecCCCEEEEEEeCCC-CC
Confidence            67899999999999997764  33445556553          111223222          234679999999 77 99


Q ss_pred             CeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         80 PSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      |.+.|++ +++.+..    .....+..     .. ..+....+|.+..
T Consensus       130 p~i~W~~-~~~~l~~----~~~~~l~~-----~~-~~d~g~Y~C~a~N  166 (180)
T 2dru_A          130 VELKLYQ-GKEHLRS----LRQKTMSY-----QW-TNLRAPFKCKAVN  166 (180)
T ss_dssp             CEEEEEE-TTEEEEE----ESSSEEEE-----EC-SCCSSCEEEEEEE
T ss_pred             CEEEEEE-CCeECcC----CCCCEEEE-----EE-hhcCccEEEEEec
Confidence            9999999 5555541    11112221     11 4567789998854

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.01  E-value=6.4e-10  Score=71.04  Aligned_cols=93  Identities=15%  Similarity=0.260  Sum_probs=62.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.+.|..+     .+.|.|.             .   +...   ....+.+|+.+.|.|.+.+.|.+
T Consensus        72 i~~v~~~D~G~Y~C~~~~~~~-----~~~l~V~-------------~---~~~~---~~~~v~~g~~~~l~C~~~~~p~~  127 (184)
T 2ny1_B           72 IKNLKIEDSDTYICEVEDQKE-----EVQLLVF-------------G---LTAN---SDTHLLQGQSLTLTLESPPGSSP  127 (184)
T ss_dssp             ECSCCGGGCEEEEEEETTEEE-----EEEEEEE-------------E---EEES---SCSEEETTCCEEEEEECCTTCCC
T ss_pred             EecCCHHHCEEEEEEEEcCCC-----cEEEEEE-------------E---ecCC---CCceeecCCCEEEEEEcCCCCCC
Confidence            568899999999999987643     3445543             0   1111   23467889999999999888999


Q ss_pred             eEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         81 SIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        81 ~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      .+.|+++++....      ....+.+..    +...+.....|.+..
T Consensus       128 ~v~W~~~~~~~~~------~~~~L~i~~----v~~~d~G~Y~C~a~n  164 (184)
T 2ny1_B          128 SVQCRSPRGKNIQ------GGKTLSVSQ----LELQDSGTWTCTVLQ  164 (184)
T ss_dssp             EEEEECTTSCEEE------ESSEEEESS----CCGGGCEEEEEEEEE
T ss_pred             EEEEEeCCCcccc------CceEEEEec----CCcCCCeEEEEEEEE
Confidence            9999995433211      112333322    345667788888764

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.01  E-value=1.4e-09  Score=74.28  Aligned_cols=84  Identities=15%  Similarity=0.222  Sum_probs=52.9

Q ss_pred             CccccccCCeEEEEEEEcCCCC----CCccceEEEEeccccce-eEEe-ecCCCCeeEeCCCCCceEeecCCeEEEEeee
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP----SVSKRIMLIVQCQYFSK-LYIY-TSSMPPDILDYPTSSDIMVREGSNVSMRCAA   74 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~~~~~-~~~~-~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~   74 (151)
                      |.+++.+|+|.|.|.+.|..|.    .....+.|.|....... ...+ ....++.+...+  ..+.+.+|+++.|.|.+
T Consensus       109 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~v~~G~~v~L~C~~  186 (282)
T 1qok_A          109 LSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSP--AIMSASPGEKVTITCSA  186 (282)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEEC--SEEEECTTCCEEEEEEE
T ss_pred             ECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCC--CEEEEcCCCcEEEEEEe
Confidence            5789999999999999998651    11234456664211000 0000 001233444434  45678899999999999


Q ss_pred             cCCCCCeEEEEeC
Q psy16421         75 SGSPPPSIMWRRE   87 (151)
Q Consensus        75 ~g~~~~~~~W~~~   87 (151)
                      .+.+ +.+.|++.
T Consensus       187 ~~~~-~~v~W~k~  198 (282)
T 1qok_A          187 SSSV-SYMHWFQQ  198 (282)
T ss_dssp             SSCC-SCCEEEEE
T ss_pred             cCCC-ceEEEEEE
Confidence            9988 89999983

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.00  E-value=8.1e-10  Score=73.75  Aligned_cols=85  Identities=19%  Similarity=0.197  Sum_probs=50.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCC--
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSP--   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~--   78 (151)
                      |.+++.+|+|.|.|.+.|..+........|.|...............++.....+  ....+.+|+++.|.|.+.+.+  
T Consensus        75 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~G~~v~L~C~~~g~~~~  152 (242)
T 2znx_A           75 INSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQES--GPSLVKPSQTLSLTCSVTGDSIT  152 (242)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEE--CCSEECTTSCEEEEEEEESSCGG
T ss_pred             ECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecC--CcceecCCCeEEEEEEEEccccC
Confidence            5789999999999999987543233445666642110000000000111122222  234688999999999998865  


Q ss_pred             CCeEEEEeC
Q psy16421         79 PPSIMWRRE   87 (151)
Q Consensus        79 ~~~~~W~~~   87 (151)
                      .+.+.|++.
T Consensus       153 ~~~v~W~k~  161 (242)
T 2znx_A          153 SDYXSXIRK  161 (242)
T ss_dssp             GSCEEEEEE
T ss_pred             CcceeeEee
Confidence            578999984

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.00  E-value=4.1e-10  Score=76.18  Aligned_cols=84  Identities=19%  Similarity=0.377  Sum_probs=54.1

Q ss_pred             CccccccCCeEEEEEEEcCCC-CCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVP-PSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++.+|+|.|.|.+.+... ........|.|...       +....+|.+..... ....+.+|+.+.|.|.+.|.++
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~-------~~~~~~P~v~~~~~-~~~~~~~g~~v~L~C~~~g~~p  175 (268)
T 3pl6_D          104 IQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLED-------LKNVFPPEVAVFEP-SEAEISHTQKATLVCLATGFYP  175 (268)
T ss_dssp             ECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESC-------GGGCBCCEEEEECC-CHHHHHHHSEEEEEEEEEEEBS
T ss_pred             ECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecC-------cccccCCceEEeCC-CcccccCCCceEEEEEECcccC
Confidence            578999999999999998521 12334455666421       11123555443221 3344556999999999988554


Q ss_pred             C--eEEEEeCCeeeEe
Q psy16421         80 P--SIMWRREGGEMIT   93 (151)
Q Consensus        80 ~--~~~W~~~~~~~~~   93 (151)
                      +  .+.|++ +++.+.
T Consensus       176 ~~~~v~W~~-~g~~l~  190 (268)
T 3pl6_D          176 DHVELSWWV-NGKEVH  190 (268)
T ss_dssp             SCEEEEEEE-SSSEEC
T ss_pred             CCeEEEEEE-CCEECC
Confidence            4  899999 676664

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.00  E-value=3.2e-09  Score=70.16  Aligned_cols=29  Identities=24%  Similarity=0.550  Sum_probs=26.4

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|.+.+.+.+.+.|++
T Consensus        32 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~k   60 (237)
T 3sob_L           32 SSLSASVGDRVTITCRASQDVSTAVAWYQ   60 (237)
T ss_dssp             SEEEEETTCCEEEEEEESSCCTTCEEEEE
T ss_pred             CeEEEeCCCcEEEEEecCCCCCceEEEEE
Confidence            46788899999999999998899999998

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.00  E-value=2.8e-09  Score=73.94  Aligned_cols=86  Identities=16%  Similarity=0.336  Sum_probs=57.7

Q ss_pred             CceEeecCCeEEEEeeecCC-CCCeEEEEeCCeee---Eec-------------------c-cC----------------
Q psy16421         58 SDIMVREGSNVSMRCAASGS-PPPSIMWRREGGEM---ITN-------------------S-FN----------------   97 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~-~~~~~~W~~~~~~~---~~~-------------------~-~~----------------   97 (151)
                      ..+.+.+|+++.|.|.+.+. |.+.+.|++++...   +..                   . ..                
T Consensus        11 ~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   90 (327)
T 2wng_A           11 KSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYY   90 (327)
T ss_dssp             SEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEE
T ss_pred             CceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEEE
Confidence            56788899999999999887 88899999953210   100                   0 00                


Q ss_pred             ----CCCC----------Ceeee---------CCceeEeecCCcEEEEeeecccCCC--eeEEEcCCceec
Q psy16421         98 ----NTVP----------PIVKI---------PSQLIGAHEGQQLVLECISEAYPKS--VNYWTREKGDMI  143 (151)
Q Consensus        98 ----~~~~----------p~~~~---------~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~k~~~~~~  143 (151)
                          +...          ..+.+         ......+.+|+.+.|.|.+.|.|++  .+.|+|+|..+.
T Consensus        91 C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~  161 (327)
T 2wng_A           91 CVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELS  161 (327)
T ss_dssp             EEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             EEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcc
Confidence                0000          01111         0112456889999999999998876  799999976654

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=98.99  E-value=3.6e-10  Score=78.68  Aligned_cols=81  Identities=21%  Similarity=0.434  Sum_probs=58.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCC---CccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeee---
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPS---VSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA---   74 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~---   74 (151)
                      |.+++.+|+|.|+|.+.|..+..   .+..+.|.|...        ....+|.+...+  ....+.+|+.+.|.|.+   
T Consensus       184 i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~--------~~~~~P~i~~~~--~~~~v~~G~~v~L~C~~~~~  253 (339)
T 3o4o_C          184 VHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKK--------KEETIPVIISPL--KTISASLGSRLTIPCKVFLG  253 (339)
T ss_dssp             ESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECC--------CCCCCCEECCCS--CCCCCCCCSCCCCCCCEEES
T ss_pred             EcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcC--------CCCCCCEEecCC--ceeEeccCCCEEEEEEEECC
Confidence            56789999999999999987642   234455555321        011356665554  56678889999999999   


Q ss_pred             cCCC-CCeEEEEeCCeeeE
Q psy16421         75 SGSP-PPSIMWRREGGEMI   92 (151)
Q Consensus        75 ~g~~-~~~~~W~~~~~~~~   92 (151)
                      .|.| .+.+.|++ ++..+
T Consensus       254 ~g~P~~~~v~W~~-~g~~~  271 (339)
T 3o4o_C          254 TGTPLTTMLWWTA-NDTHI  271 (339)
T ss_dssp             SSCCSSCEEEEES-SSSCS
T ss_pred             CCCCCCceEEEEE-CCeec
Confidence            8999 88999998 56554

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.99  E-value=4e-10  Score=75.22  Aligned_cols=85  Identities=19%  Similarity=0.359  Sum_probs=54.5

Q ss_pred             CccccccCCeEEEEEEEcCCCC---CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP---SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS   77 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~   77 (151)
                      |.+++.+|+|.|.|.+.+..+.   .......|.|...       +....+|.+..... ....+.+|+.+.|.|.+.|.
T Consensus        81 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~-------~~~~~~P~i~~~~~-~~~~~~~g~~v~L~C~~~g~  152 (246)
T 4dzb_B           81 VTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLED-------LKNVFPPEVAVFEP-SEAEISHTQKATLVCLATGF  152 (246)
T ss_dssp             ECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESC-------GGGCBCCEEEEECC-CHHHHHHHSEEEEEEEEEEE
T ss_pred             ECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecC-------CCcccCCceEeecC-CchhccCCCcEEEEEEEccC
Confidence            5789999999999999876431   2223445665410       00123455433221 33445679999999999886


Q ss_pred             CCC--eEEEEeCCeeeEec
Q psy16421         78 PPP--SIMWRREGGEMITN   94 (151)
Q Consensus        78 ~~~--~~~W~~~~~~~~~~   94 (151)
                      +++  .+.|++ +++.+..
T Consensus       153 ~p~~~~v~W~k-~g~~l~~  170 (246)
T 4dzb_B          153 YPDHVELSWWV-NGKEVHS  170 (246)
T ss_dssp             BSSCEEEEEEE-TTEEECT
T ss_pred             cCCceEEEEEE-CCEECCC
Confidence            654  899999 6766653

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.99  E-value=1.3e-09  Score=74.17  Aligned_cols=85  Identities=19%  Similarity=0.269  Sum_probs=52.0

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEee-cCCCCeeEeCCCCCceEeecCCeEEEEeeecCCC-
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYT-SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSP-   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~-   78 (151)
                      |.+++.+|+|.|.|.+.|..+........|.|..........+. ...++.+...+  ....+.+|+++.|.|.+.+.+ 
T Consensus        86 I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p--~~~~v~~G~~v~L~C~~~g~~~  163 (276)
T 3auv_A           86 ISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVES--GGGLVQPGGSLRLSCAASGFTI  163 (276)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEE--CCEEECTTCCEEEEEEEESSCG
T ss_pred             EccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECC--CceEecCCCeEEEEEEecCccC
Confidence            57899999999999999986533444456665421100000000 00112222323  457888999999999998866 


Q ss_pred             -CCeEEEEeC
Q psy16421         79 -PPSIMWRRE   87 (151)
Q Consensus        79 -~~~~~W~~~   87 (151)
                       .+.+.|++.
T Consensus       164 ~~~~v~W~k~  173 (276)
T 3auv_A          164 SDYWIHWVRQ  173 (276)
T ss_dssp             GGSEEEEEEE
T ss_pred             CCCEEEEEEc
Confidence             589999984

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.99  E-value=2.1e-09  Score=70.06  Aligned_cols=30  Identities=23%  Similarity=0.489  Sum_probs=25.4

Q ss_pred             CceEeecCCeEEEEeeecCCC---CCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASGSP---PPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~---~~~~~W~~~   87 (151)
                      ..+.+.+|+++.|.|.+.+.+   .+.+.|++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~   40 (212)
T 1q0x_L            8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQE   40 (212)
T ss_dssp             SEEEECTTCCEEEEEEESSSCCCGGGCCEEEEE
T ss_pred             CeEeecCCCCEEEEEEecccccCCCCeEEEEEe
Confidence            467788999999999998877   478999984

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.99  E-value=2.5e-09  Score=71.94  Aligned_cols=85  Identities=14%  Similarity=0.149  Sum_probs=53.5

Q ss_pred             CccccccCCeEEEEEEEcCCCC--CCccceEEEEeccccceeE----EeecCCCCeeEeCCCCCceEeecCCeEEEEeee
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP--SVSKRIMLIVQCQYFSKLY----IYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA   74 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~   74 (151)
                      |.+++.+|+|.|.|.+.|..+.  .......|.|......+..    .......+.+...+  ..+.+.+|+++.|.|.+
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p--~~~~v~~G~~v~L~C~~  160 (259)
T 3omz_A           83 LRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQ--SSVSMPVRKAVTLNCLY  160 (259)
T ss_dssp             ESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCC--CCEEEETTCCEEECCEE
T ss_pred             ECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeC--CEEEEcCCCCEEEEEEC
Confidence            5789999999999999987652  2334455666421100000    00000134444444  56788999999999998


Q ss_pred             cCC-CCCeEEEEeC
Q psy16421         75 SGS-PPPSIMWRRE   87 (151)
Q Consensus        75 ~g~-~~~~~~W~~~   87 (151)
                      .+. +.+.+.|++.
T Consensus       161 ~~~~~~~~v~W~k~  174 (259)
T 3omz_A          161 ETSWWSYYIFWYKR  174 (259)
T ss_dssp             ECCCSSCEEEEEEE
T ss_pred             CCccCCceEEEeee
Confidence            774 7889999983

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.99  E-value=6.9e-10  Score=74.73  Aligned_cols=84  Identities=15%  Similarity=0.149  Sum_probs=51.5

Q ss_pred             CccccccCCeEEEEEEEcCCCC--------CCccceEEEEecccccee-EEe-ecCCCCeeEeCCCCCceEeecCCeEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP--------SVSKRIMLIVQCQYFSKL-YIY-TSSMPPDILDYPTSSDIMVREGSNVSM   70 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~--------~~~~~~~l~v~~~~~~~~-~~~-~~~~~p~~~~~~~~~~~~~~~g~~~~l   70 (151)
                      |.+++.+|+|.|.|.+.|..|.        .......|.|........ ..+ ....++.+...+  ..+.+.+|+++.|
T Consensus        82 I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~v~~G~~v~L  159 (257)
T 1f3r_B           82 MNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSP--SLLSASVGDRVTL  159 (257)
T ss_dssp             EESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEET--SEECCCTTCCEEE
T ss_pred             ECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccC--CEEEEcCCCCEEE
Confidence            5689999999999999998531        112334555542100000 000 000112222222  4566789999999


Q ss_pred             EeeecCCCCCeEEEEe
Q psy16421         71 RCAASGSPPPSIMWRR   86 (151)
Q Consensus        71 ~C~~~g~~~~~~~W~~   86 (151)
                      .|.+.+.+.+.+.|++
T Consensus       160 ~C~~~~~~~~~v~W~k  175 (257)
T 1f3r_B          160 SCKGSQNINNYLAWYQ  175 (257)
T ss_dssp             EEECSSCCBTCEEEEE
T ss_pred             EEEECCcCCCcEEEEE
Confidence            9999998888999999

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.99  E-value=4.7e-09  Score=68.70  Aligned_cols=31  Identities=26%  Similarity=0.456  Sum_probs=26.8

Q ss_pred             EeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421        112 GAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       112 ~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      .+.+|+.+.|.|.+.|.|.|.++|+++++..
T Consensus       127 ~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~  157 (222)
T 3sbw_C          127 VDPVTSEHELTCQAEGYPKAEVIWTSSDHQV  157 (222)
T ss_dssp             EETTTTEEEEEEEEEEBSCCEEEEEETTCCE
T ss_pred             eecCCCcEEEEEEecCCCCCeEEEEECCCce
Confidence            4578999999999999999999999984433

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.98  E-value=1.7e-09  Score=72.79  Aligned_cols=69  Identities=25%  Similarity=0.445  Sum_probs=49.8

Q ss_pred             CccccccCCeEEEEEEEcCCCCC-CccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeee---cC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPS-VSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA---SG   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~---~g   76 (151)
                      |.+++.+|+|.|+|.+.|..+.. ....+.|.|.            ...      +  ....+.+|+++.|.|.+   .+
T Consensus        88 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~------------~~~------p--~~~~v~~G~~v~L~C~~~~~~~  147 (268)
T 3mj6_A           88 LQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL------------PEE------P--RDLRVRVGDTTQMRCSIQSTEE  147 (268)
T ss_dssp             ECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE------------CCC------C--SEEEEETTCCEEECCBCEESSS
T ss_pred             ECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe------------ccC------C--CccccccCCcEEEEEEecCCCC
Confidence            57899999999999999976522 2233344332            111      1  35678899999999999   67


Q ss_pred             CCCCeEEEEeCCe
Q psy16421         77 SPPPSIMWRREGG   89 (151)
Q Consensus        77 ~~~~~~~W~~~~~   89 (151)
                      .|.+.+.|++.++
T Consensus       148 ~p~~~v~W~~~~~  160 (268)
T 3mj6_A          148 KRVTKVNWMFSSG  160 (268)
T ss_dssp             SCCCEEEEEEECT
T ss_pred             CCccceEEEecCC
Confidence            7899999998433

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.98  E-value=4e-10  Score=74.64  Aligned_cols=79  Identities=18%  Similarity=0.417  Sum_probs=46.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC-CC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS-PP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-~~   79 (151)
                      |.+++.+|+|.|.|.+.+..+......+.|.|...         ...+|.+....  ....+.+|+.+.|.|.+.|. |.
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~---------~~~~P~v~~~~--~~~~~~~g~~v~L~C~~~g~~P~  151 (227)
T 1mju_H           83 LSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAA---------KTTAPSVYPLA--PVCGDTSGSSVTLGCLVKGYFPE  151 (227)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSS---------CCBCCEEEEEC--CCC------CEEEEEEEEEEBSS
T ss_pred             ECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCC---------CCCCCEEEEec--CCccccCCCcEEEEEEeecEeCC
Confidence            67899999999999999864211223446666410         11234443322  11245679999999999874 66


Q ss_pred             C-eEEEEeCCeee
Q psy16421         80 P-SIMWRREGGEM   91 (151)
Q Consensus        80 ~-~~~W~~~~~~~   91 (151)
                      + .+.|+++ ++.
T Consensus       152 p~~v~W~~~-g~~  163 (227)
T 1mju_H          152 PVTLTWNSG-SLS  163 (227)
T ss_dssp             CCEEEEGGG-TBC
T ss_pred             CeEEEEecC-CCc
Confidence            6 9999994 443

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.97  E-value=1.9e-09  Score=71.94  Aligned_cols=85  Identities=19%  Similarity=0.282  Sum_probs=50.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCC--
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSP--   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~--   78 (151)
                      |.+++.+|+|.|.|.+.|..+........|.|...............++.....+  ....+.+|+++.|.|.+.+.+  
T Consensus        80 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~G~~v~L~C~~~~~~~~  157 (247)
T 1svz_A           80 ISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQS--GPELKKPGETVKISCKATNYAFT  157 (247)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEC--CCEEECTTCCEEEEEEEESSCGG
T ss_pred             ECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCC--CceeecCCCcEEEEEEEcCcccC
Confidence            5789999999999999987553233445666642100000000000022222222  235688999999999998864  


Q ss_pred             CCeEEEEeC
Q psy16421         79 PPSIMWRRE   87 (151)
Q Consensus        79 ~~~~~W~~~   87 (151)
                      .+.+.|++.
T Consensus       158 ~~~v~W~k~  166 (247)
T 1svz_A          158 DYSMHWVKQ  166 (247)
T ss_dssp             GSCEEEEEE
T ss_pred             CcEEEEEEe
Confidence            578999984

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=98.97  E-value=1.1e-09  Score=74.55  Aligned_cols=70  Identities=16%  Similarity=0.246  Sum_probs=52.6

Q ss_pred             cccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEE
Q psy16421          5 SREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMW   84 (151)
Q Consensus         5 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W   84 (151)
                      ...|+|.|+|.|.|..+...+..+.|.|..           ..+|.+...+  ....+.+|+++.|.|.+.+.|.+.+.|
T Consensus       149 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~-----------~~~p~i~~~~--~~~~v~~G~~v~L~C~~~g~p~p~v~W  215 (289)
T 3mjg_X          149 GIFEDRSYICKTTIGDREVDSDAYYVYRLQ-----------VSSINVSVNA--VQTVVRQGENITLMCIVIGNEVVNFEW  215 (289)
T ss_dssp             ECCCSSEEEEEEEETTEEEECCCEEEEECC-----------CCCCCCEEEE--SCSEEETTSCEEEEEEEESCSSBEEEE
T ss_pred             eeccCcEEEEEEEeCCceeeeeeEEEEecC-----------CCCCCcEEeC--CcceeEcCCCEEEEEEECCCCCcceEE
Confidence            457999999999987764455555665531           1356665554  346788999999999999999999999


Q ss_pred             EeC
Q psy16421         85 RRE   87 (151)
Q Consensus        85 ~~~   87 (151)
                      +++
T Consensus       216 ~~~  218 (289)
T 3mjg_X          216 TYP  218 (289)
T ss_dssp             ECT
T ss_pred             EcC
Confidence            973

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.97  E-value=3.4e-09  Score=71.30  Aligned_cols=83  Identities=20%  Similarity=0.249  Sum_probs=52.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCC---CccceEEEEeccc-------cceeEEeecCCCCeeEeCCCCCceEeecCCeEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPS---VSKRIMLIVQCQY-------FSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSM   70 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~---~~~~~~l~v~~~~-------~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l   70 (151)
                      |.+++.+|+|.|.|.+.|..+..   ......|.|....       ...........+|.+...+  ....+.+|+++.|
T Consensus        80 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p--~~~~v~~G~~v~L  157 (256)
T 3tf7_C           80 KASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSP--RNKVTVTGENVTL  157 (256)
T ss_dssp             ESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESC--SEEEEETTCCEEE
T ss_pred             ECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecC--CEEEEeCCCcEEE
Confidence            57899999999999999976421   2234456664200       0000000012355666655  5677889999999


Q ss_pred             EeeecCCCCCeEEEEe
Q psy16421         71 RCAASGSPPPSIMWRR   86 (151)
Q Consensus        71 ~C~~~g~~~~~~~W~~   86 (151)
                      .|.+.+. .+.+.|++
T Consensus       158 ~C~~~~~-~~~v~W~k  172 (256)
T 3tf7_C          158 SCRQTNS-HNYMYWYR  172 (256)
T ss_dssp             CEEECSC-CSEEEEEE
T ss_pred             EEEcCCC-ceEEEEEE
Confidence            9999886 78999998

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.97  E-value=9.5e-10  Score=72.59  Aligned_cols=80  Identities=19%  Similarity=0.334  Sum_probs=51.9

Q ss_pred             CccccccCCeEEEEEEEcCCCC-----CCccceEEEEeccccceeEEeecCCCCeeEe-CCCCCceEeecCCeEEEEeee
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP-----SVSKRIMLIVQCQYFSKLYIYTSSMPPDILD-YPTSSDIMVREGSNVSMRCAA   74 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~-----~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~g~~~~l~C~~   74 (151)
                      |.+++.+|+|.|.|.+.+..+.     .....+.|.|..         ....+|.+.. .+   ...+.+|+.+.|.|.+
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~---------~~~~~P~i~~~~~---~~~~~~g~~v~L~C~~  150 (223)
T 1dee_B           83 MNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSS---------GSASAPTLFPLVS---CENSNPSSTVAVGCLA  150 (223)
T ss_dssp             ECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECS---------SCCBCCEEEEEEC---TTCCCSSSEEEEEEEE
T ss_pred             ECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEcc---------CCCCCCEEEEecC---CcccCCCCcEEEEEEE
Confidence            6789999999999999987531     111334565531         0113454442 22   1234679999999999


Q ss_pred             cCC-CCC-eEEEEeCCeeeE
Q psy16421         75 SGS-PPP-SIMWRREGGEMI   92 (151)
Q Consensus        75 ~g~-~~~-~~~W~~~~~~~~   92 (151)
                      .+. |.+ .+.|++.+++.+
T Consensus       151 ~g~~P~p~~v~W~~~~g~~l  170 (223)
T 1dee_B          151 QDFLPDSITFSWKYKNNSDI  170 (223)
T ss_dssp             EEEBSSCCEEEEEETTSCBC
T ss_pred             EEEeCCCeEEEeEccCCCcc
Confidence            885 766 999999445544

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.97  E-value=1.1e-09  Score=71.49  Aligned_cols=81  Identities=10%  Similarity=0.189  Sum_probs=51.9

Q ss_pred             eecCCeEEEEeeecCCC----CCeEEEEeCCeeeEecc---------cC-------------------------------
Q psy16421         62 VREGSNVSMRCAASGSP----PPSIMWRREGGEMITNS---------FN-------------------------------   97 (151)
Q Consensus        62 ~~~g~~~~l~C~~~g~~----~~~~~W~~~~~~~~~~~---------~~-------------------------------   97 (151)
                      +.+|+++.|.|.+.|.+    ...+.|++++ ..+...         ..                               
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~-~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~   93 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDD-VEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFP   93 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETT-EEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECC-ccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCC
Confidence            67899999999998864    3489999955 333210         00                               


Q ss_pred             ------------CCCCCeeeeCCceeEeecCCcEEEEeeeccc-CCC-eeEEEcCCceec
Q psy16421         98 ------------NTVPPIVKIPSQLIGAHEGQQLVLECISEAY-PKS-VNYWTREKGDMI  143 (151)
Q Consensus        98 ------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~k~~~~~~  143 (151)
                                  +..+|.+...+.......|+.+.|.|.+.|. |++ .++|+|||..+.
T Consensus        94 ~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  153 (207)
T 2vol_A           94 APIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAE  153 (207)
T ss_dssp             SCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             CceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEecc
Confidence                        0123333322221112358999999999984 553 799999987653

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.97  E-value=1.9e-09  Score=73.92  Aligned_cols=86  Identities=13%  Similarity=0.143  Sum_probs=62.0

Q ss_pred             ceEeecCCeEEEEeee-cCCCCCeEEEEeCCeeeEecccC------------------------------C---------
Q psy16421         59 DIMVREGSNVSMRCAA-SGSPPPSIMWRREGGEMITNSFN------------------------------N---------   98 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~-~g~~~~~~~W~~~~~~~~~~~~~------------------------------~---------   98 (151)
                      .+.+.+|+.+.|.|.+ .+.|.+.+.|++ +++.+....+                              +         
T Consensus        10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k-~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s~~   88 (312)
T 2y23_A           10 VVNVDDDGVISLNFECDKMTPKSEFSWSK-DYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYL   88 (312)
T ss_dssp             EEEECTTCCEEEEEECSSCCTTCCEEEEE-TTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCEEEE
T ss_pred             eEEEecCCeEEEEEEEeCCCCCcEEEEEE-CCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEEEEE
Confidence            4567789999988886 467899999999 5555432211                              0         


Q ss_pred             ---CC------------CCeeeeCC-ceeEeecCCcEEEEeeec-ccCCCeeEEEcCCceeccC
Q psy16421         99 ---TV------------PPIVKIPS-QLIGAHEGQQLVLECISE-AYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus        99 ---~~------------~p~~~~~~-~~~~~~~g~~~~l~C~~~-g~p~~~~~W~k~~~~~~~~  145 (151)
                         ..            +|.+.... ....+.+|+.+.|.|.+. +.|.+.+.|+|++..+..+
T Consensus        89 l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~  152 (312)
T 2y23_A           89 IDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEG  152 (312)
T ss_dssp             ECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSS
T ss_pred             EEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeC
Confidence               00            34333322 367789999999999999 8999999999998776543

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.96  E-value=8.6e-10  Score=72.36  Aligned_cols=79  Identities=19%  Similarity=0.399  Sum_probs=51.8

Q ss_pred             CccccccCCeEEEEEEEcCCCC--CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC-
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP--SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS-   77 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-   77 (151)
                      |.+++.+|+|.|.|.+.+..+.  .....+.|.|..         ....+|.+...+  ....+.+|+.+.|.|.+.|. 
T Consensus        82 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~---------~~~~~P~i~~~~--~~~~~~~g~~v~L~C~~~g~~  150 (215)
T 1c5d_H           82 MNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSS---------AQTTAPSVYPLA--PGCGDTTSSTVTLGCLVKGYF  150 (215)
T ss_dssp             ESSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECS---------SCCBCCCEEEEC--CCSSCCCCSSEEEEEEEEEEB
T ss_pred             ECCCCcccCEEEEEEEecCCcccceEcCCEEEEecC---------CCCCCCeEEecc--CChhhccCCcEEEEEEEeeeE
Confidence            5789999999999999987531  122345666641         111245444322  11234679999999999885 


Q ss_pred             CCC-eEEEEeCCeee
Q psy16421         78 PPP-SIMWRREGGEM   91 (151)
Q Consensus        78 ~~~-~~~W~~~~~~~   91 (151)
                      |.+ .+.|+++ ++.
T Consensus       151 P~p~~v~W~~~-g~~  164 (215)
T 1c5d_H          151 PEPVTVTWNSG-ALS  164 (215)
T ss_dssp             SSCCEEEEGGG-TTC
T ss_pred             cCCcEEEEccC-Ccc
Confidence            777 9999994 443

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.96  E-value=9.9e-10  Score=73.05  Aligned_cols=84  Identities=19%  Similarity=0.348  Sum_probs=53.8

Q ss_pred             CccccccCCeEEEEEEEcC--CCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-C
Q psy16421          1 MTEVSREHMGAYLCIASNG--VPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-S   77 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~--~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~   77 (151)
                      |.+++.+|+|.|.|.+.+.  ..........|.|...       +....+|.+..... ....+.+|+.+.|.|.+.+ .
T Consensus        79 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~-------~~~~~~p~~~~~~~-~~~~~~~g~~v~L~C~~~g~~  150 (240)
T 3q5y_A           79 MSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLED-------LRNVTPPKVSLFEP-SKAEIANKQKATLVCLARGFF  150 (240)
T ss_dssp             ECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESC-------GGGCBCCEEEEECC-CHHHHHHHSEEEEEEEEEEEB
T ss_pred             ECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEecc-------ccCCCCCeeEEeCC-chhhcccCCceEEEEEEeeEE
Confidence            5789999999999999843  2212334455665410       01124555543221 3344557899999999988 5


Q ss_pred             CCC-eEEEEeCCeeeEe
Q psy16421         78 PPP-SIMWRREGGEMIT   93 (151)
Q Consensus        78 ~~~-~~~W~~~~~~~~~   93 (151)
                      |.+ .+.|++ +++.+.
T Consensus       151 P~~~~v~W~~-~g~~l~  166 (240)
T 3q5y_A          151 PDHVELSWWV-NGKEVH  166 (240)
T ss_dssp             SSCEEEEEEE-TTEEEC
T ss_pred             CCCeEEEEEE-CCEECc
Confidence            656 789999 677664

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.96  E-value=8.4e-10  Score=72.91  Aligned_cols=78  Identities=19%  Similarity=0.443  Sum_probs=51.1

Q ss_pred             CccccccCCeEEEEEEEcCCC-----C--CCccceEEEEeccccceeEEeecCCCCeeEe-CCCCCceEeecCCeEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVP-----P--SVSKRIMLIVQCQYFSKLYIYTSSMPPDILD-YPTSSDIMVREGSNVSMRC   72 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~-----~--~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~g~~~~l~C   72 (151)
                      |.+++.+|+|.|.|.+.+..+     .  .....+.|.|...         ...+|.+.. .+.  . .+.+|+.+.|.|
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~---------~~~~P~v~~~~~~--~-~~~~g~~v~L~C  150 (225)
T 1op3_H           83 MHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPA---------STKGPSVFPLAPS--S-KSTSGGTAALGC  150 (225)
T ss_dssp             ECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESC---------SCBCCEEEEECCC--T-TCCCCCEEEEEE
T ss_pred             ECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccC---------CCcCCeEEEeccc--c-cccCCCcEEEEE
Confidence            578999999999999999754     1  1123456666410         112344433 321  1 245799999999


Q ss_pred             eecCC-CCC-eEEEEeCCeee
Q psy16421         73 AASGS-PPP-SIMWRREGGEM   91 (151)
Q Consensus        73 ~~~g~-~~~-~~~W~~~~~~~   91 (151)
                      .+.|. |.+ .+.|++ ++..
T Consensus       151 ~~~g~~P~p~~v~W~~-~~~~  170 (225)
T 1op3_H          151 LVKDYFPEPVTVSWNS-GALT  170 (225)
T ss_dssp             EEEEEBSSCCEEECCT-TSCC
T ss_pred             EEEeEECCCeEEEEec-CCCc
Confidence            99875 666 999999 4543

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.95  E-value=3.4e-09  Score=78.96  Aligned_cols=79  Identities=20%  Similarity=0.341  Sum_probs=55.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCC-eEEEEeeecC-CC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGS-NVSMRCAASG-SP   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~-~~~l~C~~~g-~~   78 (151)
                      |.+++.+|+|.|+|.+.|..+......+.|.|..          ...+|.+....    ..+.+++ .+.|.|.+.+ .|
T Consensus       436 i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~----------~~~~p~i~~~~----~~~~~~~~~~~l~C~~~~~~P  501 (581)
T 3o3u_N          436 LPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQ----------IPGKPEIVDSA----SELTAGVPNKVGTCVSEGSYP  501 (581)
T ss_dssp             ESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEB----------CCCCCEEESCC----SEECTTSCEEEEEEEEEEEBS
T ss_pred             EeccccccCeEEEEEEEcCCCceeEEEEEEEEEc----------CCCCCEEEcCC----cccccCCceeEEEEECCCCCC
Confidence            5789999999999999998884435667777742          12344444322    2344544 4567999887 69


Q ss_pred             CCeEEEEeCCeeeEec
Q psy16421         79 PPSIMWRREGGEMITN   94 (151)
Q Consensus        79 ~~~~~W~~~~~~~~~~   94 (151)
                      .|.+.|++ +++.+..
T Consensus       502 ~~~i~W~~-~g~~l~~  516 (581)
T 3o3u_N          502 AGTLSWHL-DGKPLVP  516 (581)
T ss_dssp             CCEEEEEE-TTEECCT
T ss_pred             CCeEEEEE-CCEECCC
Confidence            99999999 6776653

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.95  E-value=1.1e-09  Score=72.87  Aligned_cols=84  Identities=17%  Similarity=0.353  Sum_probs=54.2

Q ss_pred             CccccccCCeEEEEEEEcCCC----CCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC
Q psy16421          1 MTEVSREHMGAYLCIASNGVP----PSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g   76 (151)
                      |.+++.+|+|.|.|.+.+..+    ........|.|...       +....+|.+..... ....+.+|+.+.|.|.+.|
T Consensus        76 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~-------~~~~~~P~v~~~~~-~~~~~~~g~~~~L~C~~~g  147 (238)
T 1bec_A           76 LELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLED-------LRQVTPPKVSLFEP-SKAEIANKQKATLVCLARG  147 (238)
T ss_dssp             ESSCCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESC-------GGGCBCCEEEEECC-CSTTCSSSCSCSEEEEEEE
T ss_pred             EecCCcccCEEEEEEEecCCCCccccccCCCEEEEEecc-------CCCCCCCceEEECC-ChHHcccCCceEEEEEEee
Confidence            578999999999999998742    01123345666421       00113565544221 2334567999999999988


Q ss_pred             C-CCC-eEEEEeCCeeeEe
Q psy16421         77 S-PPP-SIMWRREGGEMIT   93 (151)
Q Consensus        77 ~-~~~-~~~W~~~~~~~~~   93 (151)
                      . |.+ .+.|++ +++.+.
T Consensus       148 ~~P~~~~v~W~~-~g~~~~  165 (238)
T 1bec_A          148 FFPDHVELSWWV-NGKEVH  165 (238)
T ss_dssp             EBSCCEEEEEEE-TTEEEC
T ss_pred             EeCCCcEEEEEE-CCEECC
Confidence            5 654 899999 666654

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.94  E-value=1.4e-09  Score=74.06  Aligned_cols=111  Identities=15%  Similarity=0.182  Sum_probs=71.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC-
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP-   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~-   79 (151)
                      |.+++.+|+|.|+|.+.|..+...+..+.|.|..         ....+|.+...+  ....+.+|+.+.|.|.+.+.+. 
T Consensus       148 i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~---------~~~~~p~i~~~~--~~~~~~~g~~v~l~C~~~~~~~~  216 (292)
T 4dkd_C          148 IHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQK---------VIPGPPALTLVP--AELVRIRGEAAQIVCSASSVDVN  216 (292)
T ss_dssp             ETTCCGGGCSEEEEEECSTTSCEECCCEEEEEEC---------CCCSSCEEEEES--SCBCCCSSSCEEEEEEEEESSSC
T ss_pred             ECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeC---------CCCCCCeEEccC--CceeEecCCCEEEEEEecCCCCc
Confidence            4678999999999999988775555577777751         112377777666  4556678999999999988664 


Q ss_pred             CeEEEEeCCeeeEecccC--CCCC-----CeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         80 PSIMWRREGGEMITNSFN--NTVP-----PIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~--~~~~-----p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +.+.|++ ++..+.....  ....     -.+.+.    .+...+.....|.+..
T Consensus       217 ~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~----~v~~~d~G~Y~C~a~N  266 (292)
T 4dkd_C          217 FDVFLQH-NNTKLAIPQQSDFHNNRYQKVLTLNLD----QVDFQHAGNYSCVASN  266 (292)
T ss_dssp             CEEECCB-SSCCCCCCBEEEEETTEEEEEEEEEES----SCCTTSCEEEEEEEEC
T ss_pred             eEEEEeC-CCcccccCccceeccceeeeEEEEEEC----ccChhcCeEEEEEEec
Confidence            5677777 4543321110  0000     011111    2456788899999864

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.93  E-value=7.1e-10  Score=73.05  Aligned_cols=79  Identities=19%  Similarity=0.313  Sum_probs=52.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCC--CccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC-
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPS--VSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS-   77 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-   77 (151)
                      |.+++.+|+|.|.|.+.+..+..  ....+.|.|...         ...+|.+...+   ...+.+|+.+.|.|.+.+. 
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~---------~~~~P~v~~~~---~~~~~~g~~v~L~C~~~g~~  150 (220)
T 2fbj_H           83 MSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAE---------SARNPTIYPLT---LPPALSSDPVIIGCLIHDYF  150 (220)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSS---------CCBCCEEEEEC---CCSSSCCSSEEEEEEEEEEB
T ss_pred             ECCCChhhCEEEEEEEeccccccceecCCEEEEecCC---------CCCCCEEEEee---cccccCCCcEEEEEEEEeEE
Confidence            57899999999999999875421  223456666411         11345554432   1234679999999999875 


Q ss_pred             CC--CeEEEEeCCeeeE
Q psy16421         78 PP--PSIMWRREGGEMI   92 (151)
Q Consensus        78 ~~--~~~~W~~~~~~~~   92 (151)
                      |.  +.+.|++ ++..+
T Consensus       151 P~~~~~v~W~~-~~~~~  166 (220)
T 2fbj_H          151 PSGTMNVTWGK-SGKDI  166 (220)
T ss_dssp             SCCCEEEEESC-CCSSC
T ss_pred             CCCcEEEEEec-CCEec
Confidence            65  6899999 45443

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.93  E-value=2.3e-09  Score=69.94  Aligned_cols=29  Identities=17%  Similarity=0.433  Sum_probs=23.0

Q ss_pred             cCCcEEEEeeeccc-CCC-eeEEEcCCceec
Q psy16421        115 EGQQLVLECISEAY-PKS-VNYWTREKGDMI  143 (151)
Q Consensus       115 ~g~~~~l~C~~~g~-p~~-~~~W~k~~~~~~  143 (151)
                      .|..+.|.|.+.|. |++ .++|+|||..+.
T Consensus       123 ~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~  153 (207)
T 1l6x_A          123 TKNQVSLTCLVKGFYPSDIAVEWESNGQPEN  153 (207)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             cCCcEEEEEEEeCeECCCeEEEEEECCeecc
Confidence            46679999999995 543 799999987654

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.93  E-value=1e-09  Score=72.59  Aligned_cols=76  Identities=20%  Similarity=0.384  Sum_probs=48.1

Q ss_pred             CccccccCCeEEEEEEEcCCCC--------CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP--------SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRC   72 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~--------~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C   72 (151)
                      |.+++.+|+|.|.|.+.+..+.        .....+.|.|..         ....+|.+...+  ....+.+|+.+.|.|
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~---------~~~~~P~i~~~~--~~~~~~~g~~~~l~C  152 (228)
T 3bae_H           84 ITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSS---------AKTTAPSVYPLA--PVCGDTTGSSVTLGC  152 (228)
T ss_dssp             ECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECS---------CCCBCCEEEEEC--C-----CCSEEEEEE
T ss_pred             EcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecC---------CCCCCCEEEEec--ccccccCCCCEEEEE
Confidence            5789999999999999987541        111235555531         011345544322  122356799999999


Q ss_pred             eecCC-CCC-eEEEEeC
Q psy16421         73 AASGS-PPP-SIMWRRE   87 (151)
Q Consensus        73 ~~~g~-~~~-~~~W~~~   87 (151)
                      .+.+. |.+ .+.|+++
T Consensus       153 ~~~g~~P~p~~v~W~~~  169 (228)
T 3bae_H          153 LVKGYFPEPVTLTWNSG  169 (228)
T ss_dssp             EEEEEBSSCCEEEEGGG
T ss_pred             EEccEeCCCEEEEEeeC
Confidence            99875 767 9999984

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.93  E-value=3.2e-09  Score=70.67  Aligned_cols=35  Identities=11%  Similarity=0.337  Sum_probs=29.4

Q ss_pred             CceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      +....+.+|+++.|.|.+.|.|.|.+.|+|++..+
T Consensus       143 ~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~  177 (250)
T 2fbo_J          143 AEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFF  177 (250)
T ss_dssp             CSEEECCTTCCEEECCCEESCTTCEEEEEEEEECS
T ss_pred             CceEEecCCCcEEEEEEecCCCCCeeEEEeCCCcc
Confidence            34456678999999999999999999999986644

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.92  E-value=1.8e-08  Score=65.25  Aligned_cols=82  Identities=13%  Similarity=0.220  Sum_probs=56.7

Q ss_pred             ceEeecCCeEEEEeeecCCCCCeEEEEeCCe----e-e---------------------------EecccC---------
Q psy16421         59 DIMVREGSNVSMRCAASGSPPPSIMWRREGG----E-M---------------------------ITNSFN---------   97 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~----~-~---------------------------~~~~~~---------   97 (151)
                      ...+.+|+.+.|.|.+.+.+.+.+.|++.+.    . .                           +....-         
T Consensus         8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~   87 (208)
T 3r4d_A            8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYT   87 (208)
T ss_dssp             SSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEE
T ss_pred             cceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEE
Confidence            3567889999999998888889999998421    0 0                           000000         


Q ss_pred             ------------------C---CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421         98 ------------------N---TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus        98 ------------------~---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                                        +   ...|.+......  +.+|+.+.|.|.+.+.| |.+.|+++|..+.
T Consensus        88 C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~  151 (208)
T 3r4d_A           88 LDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQ  151 (208)
T ss_dssp             EEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECC
T ss_pred             EEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCC
Confidence                              1   112344443333  78899999999999976 7999999877664

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.91  E-value=1.7e-09  Score=73.29  Aligned_cols=85  Identities=18%  Similarity=0.388  Sum_probs=53.9

Q ss_pred             CccccccCCeEEEEEEEcCCCC---CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP---SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-   76 (151)
                      |.+++.+|+|.|.|.+.+....   .......|.|...       +....+|.+..... ....+..|+.+.|.|.+.+ 
T Consensus       105 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~-------~~~~~~P~v~~~~~-~~~~~~~g~~v~L~C~~~g~  176 (270)
T 3qib_D          105 IQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLED-------LKNVFPPEVAVFEP-SEAEISHTQKATLVCLATGF  176 (270)
T ss_dssp             ESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESC-------STTCBCCEEEEEEC-CHHHHHHHSEEEEEEEEEEE
T ss_pred             ECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccc-------cccccCCceEEECC-CccccccCCceEEEEEecce
Confidence            6789999999999999874321   2223445655411       11122455433211 2334456999999999988 


Q ss_pred             CCCC-eEEEEeCCeeeEec
Q psy16421         77 SPPP-SIMWRREGGEMITN   94 (151)
Q Consensus        77 ~~~~-~~~W~~~~~~~~~~   94 (151)
                      .|.+ .+.|++ +++.+..
T Consensus       177 ~P~~~~v~W~k-~g~~l~~  194 (270)
T 3qib_D          177 YPDHVELSWWV-NGKEVHS  194 (270)
T ss_dssp             BSSCEEEEEEE-TTEEECT
T ss_pred             eCCCeEEEEEE-CCEECCC
Confidence            6666 799999 6777653

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.91  E-value=4.7e-09  Score=68.46  Aligned_cols=29  Identities=24%  Similarity=0.572  Sum_probs=25.3

Q ss_pred             ecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        114 HEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       114 ~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      .+|+++.|.|.  |.|.|.+.|+|+|..+..
T Consensus       126 ~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~  154 (204)
T 1sy6_A          126 ISGTTVILTCP--QYPGSEILWQHNDKNIGG  154 (204)
T ss_dssp             EETTEEEEECS--CCCSSCEEEEETTEEESC
T ss_pred             ecCCcEEEEcC--CCCCCceEEEECCEECCC
Confidence            38999999999  889999999999877644

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.91  E-value=4.7e-09  Score=68.35  Aligned_cols=112  Identities=19%  Similarity=0.269  Sum_probs=62.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEee-ecCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCA-ASGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~-~~g~~~   79 (151)
                      |.+++.+|+|.|.|.+.|..+........+.+.             .+|.....+  .......++...+.|. +.+.|+
T Consensus        87 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~--~~~~~~~~~~~~~~c~~~~~~P~  151 (225)
T 4fmk_A           87 FRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVI-------------AQPENHAEA--QEVTIGPQSVAVARCVSTGGRPP  151 (225)
T ss_dssp             ECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEE-------------BCCEEEEEE--CCBCCSSSCEEEEEEEEEEEBSC
T ss_pred             EccCCHHHCcceEEEEEeCCCcceeeeeeeeee-------------cCCceeecc--cceeecceeeeeeeeeecCCCCC
Confidence            578999999999999999876433333333332             334433332  2334455677777766 566888


Q ss_pred             CeEEEEeCCeeeEecccC-CCCCCeeeeC--CceeEeecCCcEEEEeeecc
Q psy16421         80 PSIMWRREGGEMITNSFN-NTVPPIVKIP--SQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~~~~-~~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +.+.|+++++........ ....-.+...  .....+...+...++|.|..
T Consensus       152 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N  202 (225)
T 4fmk_A          152 ARITWISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEH  202 (225)
T ss_dssp             CEEEEECSSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEEC
T ss_pred             CEEEEEECCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEc
Confidence            999999854433322111 0101111100  00111345666789999874

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.91  E-value=3.2e-08  Score=66.28  Aligned_cols=90  Identities=16%  Similarity=0.167  Sum_probs=61.2

Q ss_pred             CCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecc-------cC---------------------
Q psy16421         46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS-------FN---------------------   97 (151)
Q Consensus        46 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~-------~~---------------------   97 (151)
                      ..+|.+...+  .. .+.+|++++|.|.+.+ +.+.+.|+| +++.+...       ..                     
T Consensus         5 ~~kP~i~~~P--~~-~v~~G~~VtL~C~~~~-~~~~~~w~k-~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~   79 (242)
T 1p6f_A            5 LPKPFIWAEP--HF-MVPKEKQVTICCQGNY-GAVEYQLHF-EGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIY   79 (242)
T ss_dssp             CCCCEEEEES--CS-EEETTCCEEEEEECCT-TCCEEEEEE-TTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCEEEeeC--CC-ccCCCCcEEEEEeeCC-CCcEEEEEE-CCCccccccccccCCcceeEEEecCCCcccCeEEEEEE
Confidence            3567777766  33 7889999999999876 467899999 45443210       00                     


Q ss_pred             ----------------C---CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421         98 ----------------N---TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus        98 ----------------~---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                                      +   ..+|.+...+ ...+.+|+++.|.|.+.+. .+.+.|+|+|..+
T Consensus        80 ~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~  141 (242)
T 1p6f_A           80 RVGELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSS  141 (242)
T ss_dssp             EETTEECCCCCCEEEEEECCSCCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSC
T ss_pred             ecCCccccCCcceEEEeecccCCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCcc
Confidence                            0   0133343333 2357899999999999875 4689999997644

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.90  E-value=7.8e-09  Score=67.71  Aligned_cols=29  Identities=17%  Similarity=0.497  Sum_probs=25.8

Q ss_pred             eecCCcEEEEeeecc-cCCC-eeEEEcCCce
Q psy16421        113 AHEGQQLVLECISEA-YPKS-VNYWTREKGD  141 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~  141 (151)
                      +.+|+.+.|.|.+.| +|.| .++|+|+|..
T Consensus       136 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~  166 (219)
T 1c1e_H          136 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  166 (219)
T ss_dssp             SCCSSEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             cccCCeEEEEEEcccccCCCeEEEEEeCCcc
Confidence            467999999999998 8999 8999998764

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.90  E-value=2e-09  Score=70.12  Aligned_cols=87  Identities=17%  Similarity=0.310  Sum_probs=57.3

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCC-eeeEe--------------------cccC-------------------
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREG-GEMIT--------------------NSFN-------------------   97 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~-~~~~~--------------------~~~~-------------------   97 (151)
                      ..+.+.+|+++.|.|.+.+.+.+.+.|++.+ +..+.                    ....                   
T Consensus         7 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C   86 (212)
T 1nfd_E            7 SSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYC   86 (212)
T ss_dssp             SEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEE
T ss_pred             CeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEEE
Confidence            4567889999999999988887889999842 22110                    0000                   


Q ss_pred             --C---------------------CCCCeeeeCCceeEeecCCcEEEEeeeccc-CC-CeeEEEcCCceecc
Q psy16421         98 --N---------------------TVPPIVKIPSQLIGAHEGQQLVLECISEAY-PK-SVNYWTREKGDMIA  144 (151)
Q Consensus        98 --~---------------------~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~k~~~~~~~  144 (151)
                        .                     ..+|.+........+.+|+.+.|.|.+.|. |+ +.++|+|+|..+..
T Consensus        87 ~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~  158 (212)
T 1nfd_E           87 LSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATIND  158 (212)
T ss_dssp             EEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECS
T ss_pred             EEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCC
Confidence              0                     122333322222223569999999999987 55 78999999877654

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=98.90  E-value=2.4e-09  Score=71.32  Aligned_cols=85  Identities=18%  Similarity=0.360  Sum_probs=53.6

Q ss_pred             CccccccCCeEEEEEEEcCC---CCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-
Q psy16421          1 MTEVSREHMGAYLCIASNGV---PPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-   76 (151)
                      |.+++.+|+|.|.|.+.+..   .........|.|...       +....+|.+..... ....+.+|+.+.|.|.+.| 
T Consensus        80 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~-------~~~~~~p~~~~~~~-~~~~~~~g~~v~l~C~~~g~  151 (245)
T 4ei6_B           80 IQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLED-------LKNVFPPEVAVFEP-SEAEISHTQKATLVCLATGF  151 (245)
T ss_dssp             ECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESC-------GGGCBCCEEEEECC-CHHHHHHHSEEEEEEEEEEE
T ss_pred             ECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecc-------cCCCCCceEEEeCC-CcccccCCCceEEEEEEeeE
Confidence            57899999999999998642   112334455665410       00113454433221 3344556999999999988 


Q ss_pred             CCCC-eEEEEeCCeeeEec
Q psy16421         77 SPPP-SIMWRREGGEMITN   94 (151)
Q Consensus        77 ~~~~-~~~W~~~~~~~~~~   94 (151)
                      .|.+ .+.|++ +++.+..
T Consensus       152 ~p~~~~v~W~~-~g~~l~~  169 (245)
T 4ei6_B          152 YPDHVELSWWV-NGKEVHS  169 (245)
T ss_dssp             BSSCEEEEEEE-TTEEECT
T ss_pred             eCCCeEEEEEE-CCEECCC
Confidence            4444 899999 6777653

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=98.90  E-value=2.7e-09  Score=71.39  Aligned_cols=82  Identities=17%  Similarity=0.267  Sum_probs=52.0

Q ss_pred             eecCCeEEEEeeecCC---CCC-eEEEEeCCeeeEec--------ccC--------------------------C-----
Q psy16421         62 VREGSNVSMRCAASGS---PPP-SIMWRREGGEMITN--------SFN--------------------------N-----   98 (151)
Q Consensus        62 ~~~g~~~~l~C~~~g~---~~~-~~~W~~~~~~~~~~--------~~~--------------------------~-----   98 (151)
                      +.+|+++.|.|.+.+.   |.+ .+.|+++++.....        ...                          .     
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            6789999999999876   655 89999955332110        000                          0     


Q ss_pred             ------------CCCCeeeeCCceeEeecCCcEEEEeeecc-cCC-CeeEEEcCCceec
Q psy16421         99 ------------TVPPIVKIPSQLIGAHEGQQLVLECISEA-YPK-SVNYWTREKGDMI  143 (151)
Q Consensus        99 ------------~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~-~~~~W~k~~~~~~  143 (151)
                                  ..+|.+.+.+.......|+.+.|.|.+.| +|+ ..++|+|||..+.
T Consensus       109 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  167 (239)
T 1i1c_A          109 PIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQE  167 (239)
T ss_dssp             CEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             CcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECC
Confidence                        11233332222111235789999999998 555 3699999987653

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.90  E-value=7e-09  Score=70.19  Aligned_cols=85  Identities=19%  Similarity=0.236  Sum_probs=50.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEecccc-----ceeEEeecCCCCee-EeCCCCCceEeecCCeEEEEeee
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYF-----SKLYIYTSSMPPDI-LDYPTSSDIMVREGSNVSMRCAA   74 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~-----~~~~~~~~~~~p~~-~~~~~~~~~~~~~g~~~~l~C~~   74 (151)
                      |.+++.+|+|.|.|.+.+..+........|.|.....     ..........+|.+ ...+  ....+.+|+++.|.|.+
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~G~~v~L~C~~  162 (264)
T 2gjj_A           85 IGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQS--GPEVVKTGASVKISCKA  162 (264)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEEC--CCEEECTTCCEEEEEEE
T ss_pred             ECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCC--CCEEEcCCCcEEEEEEE
Confidence            5789999999999999987542233445666642100     00000000001222 2222  23468899999999999


Q ss_pred             cCCCC--CeEEEEeC
Q psy16421         75 SGSPP--PSIMWRRE   87 (151)
Q Consensus        75 ~g~~~--~~~~W~~~   87 (151)
                      .+.+.  +.+.|++.
T Consensus       163 ~~~~~~~~~v~W~r~  177 (264)
T 2gjj_A          163 SGYSFTGYFINWVKK  177 (264)
T ss_dssp             ESSCGGGSEEEEEEE
T ss_pred             eCCccCCeEEEEEEE
Confidence            88763  78999984

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.90  E-value=1.9e-09  Score=70.88  Aligned_cols=78  Identities=19%  Similarity=0.430  Sum_probs=51.9

Q ss_pred             CccccccCCeEEEEEEEcCCC-CCCccceEEEEeccccceeEEeecCCCCeeE-eCCCCCceEeecCCeEEEEeeecC-C
Q psy16421          1 MTEVSREHMGAYLCIASNGVP-PSVSKRIMLIVQCQYFSKLYIYTSSMPPDIL-DYPTSSDIMVREGSNVSMRCAASG-S   77 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~g~~~~l~C~~~g-~   77 (151)
                      |.+++.+|+|.|.|.+.+... ........|.|..         ....+|.+. ..+  ...  .+|+.+.|.|.+.+ .
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~---------~~~~~p~v~~~~~--~~~--~~g~~v~L~C~~~~~~  151 (221)
T 3m8o_H           85 MNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSS---------ASPTSPKVFPLSL--CST--QPDGNVVIACLVQGFF  151 (221)
T ss_dssp             ECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECS---------CCCBCCEEEEEEC--CSC--CCTTEEEEEEEEEEEB
T ss_pred             ECCCCHHHCEEEEEEEECCChhheECCCEEEEEec---------CCCCCCeEEEecC--ccc--ccCCCEEEEEEEEeeE
Confidence            578999999999999998741 2234445666531         112345554 222  112  67999999999987 6


Q ss_pred             CC--CeEEEEeCCeeeE
Q psy16421         78 PP--PSIMWRREGGEMI   92 (151)
Q Consensus        78 ~~--~~~~W~~~~~~~~   92 (151)
                      |.  +.+.|++ +++.+
T Consensus       152 P~~~~~v~W~~-~g~~~  167 (221)
T 3m8o_H          152 PQEPLSVTWSE-SGQGV  167 (221)
T ss_dssp             SSCSEEEEESC-CSTTC
T ss_pred             CCCCEEEEEEE-CCEEC
Confidence            65  4899998 56554

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.89  E-value=6.9e-09  Score=69.58  Aligned_cols=84  Identities=21%  Similarity=0.342  Sum_probs=50.3

Q ss_pred             CccccccCCeEEEEEEEcCCCC--CCccceEEEEeccccceeEEe--------ecCCCCeeEeCCCCCceEeecCCeEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP--SVSKRIMLIVQCQYFSKLYIY--------TSSMPPDILDYPTSSDIMVREGSNVSM   70 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~~~~~~~~~--------~~~~~p~~~~~~~~~~~~~~~g~~~~l   70 (151)
                      |.+++.+|+|.|.|.+.+..+.  .....+.|.|...........        ....++.+...   ....+.+|+++.|
T Consensus        78 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~G~~v~L  154 (256)
T 3ux9_B           78 ITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVES---GGGLVQPGGSLRL  154 (256)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEE---CCEEECTTCCEEE
T ss_pred             ECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcC---CCeEEcCCCeEEE
Confidence            5789999999999999986542  222345566542110000000        00001123332   2456889999999


Q ss_pred             EeeecCCC--CCeEEEEeC
Q psy16421         71 RCAASGSP--PPSIMWRRE   87 (151)
Q Consensus        71 ~C~~~g~~--~~~~~W~~~   87 (151)
                      .|.+.+.+  .+.+.|++.
T Consensus       155 ~C~~~~~~~~~~~v~W~r~  173 (256)
T 3ux9_B          155 SCAASGFTFSSYAMSWVRQ  173 (256)
T ss_dssp             EEEEESSCGGGSEEEEEEE
T ss_pred             EEEEeCCcccccEEEEEEE
Confidence            99998866  789999984

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=98.89  E-value=8.2e-09  Score=67.75  Aligned_cols=80  Identities=13%  Similarity=0.170  Sum_probs=53.8

Q ss_pred             eEeecCCeEEEEeeecCCCCC--eEEEEeCCe---eeEecccC----------------------------------CCC
Q psy16421         60 IMVREGSNVSMRCAASGSPPP--SIMWRREGG---EMITNSFN----------------------------------NTV  100 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g~~~~--~~~W~~~~~---~~~~~~~~----------------------------------~~~  100 (151)
                      +.+..|+++.|.|.+ +.|.|  .+.|++.+.   ........                                  +..
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV~~   95 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYA   95 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEB
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeecccccCcEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEEEe
Confidence            678899999999999 88888  999998541   11101100                                  233


Q ss_pred             CCeeee-CCceeEeecCCcEEEEeeeccc-CC----CeeEEEcCCceec
Q psy16421        101 PPIVKI-PSQLIGAHEGQQLVLECISEAY-PK----SVNYWTREKGDMI  143 (151)
Q Consensus       101 ~p~~~~-~~~~~~~~~g~~~~l~C~~~g~-p~----~~~~W~k~~~~~~  143 (151)
                      +|.... .+.  ....|+.+ |.|.+.|. |.    +.|.|+|||..+.
T Consensus        96 ~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~  141 (210)
T 1gsm_A           96 FPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELE  141 (210)
T ss_dssp             CCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECT
T ss_pred             cCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcc
Confidence            443222 221  45578888 99999985 64    4799999987763

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.89  E-value=3.3e-09  Score=71.82  Aligned_cols=81  Identities=22%  Similarity=0.355  Sum_probs=48.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCC--------------eeEeCCCCCceEeecCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPP--------------DILDYPTSSDIMVREGS   66 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p--------------~~~~~~~~~~~~~~~g~   66 (151)
                      |.+++.+|+|.|.|.+.|..+........|.|.......    ....+|              .....+  ....+.+|+
T Consensus        94 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~----~p~~pp~~~~~~~~~~~~~~v~~~~~--~~~~v~~G~  167 (268)
T 1x9q_A           94 INRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDA----KKDAAKKDDAKKDDAKKDGGVKLDET--GGGLVQPGG  167 (268)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEC----------------------------CGGGCEEEEE--CCEEECTTC
T ss_pred             ECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCC----CccccccccccccccccccceEEECC--CceEecCCC
Confidence            578999999999999998754222334455554211000    000011              112222  356788999


Q ss_pred             eEEEEeeecCCCC--CeEEEEeC
Q psy16421         67 NVSMRCAASGSPP--PSIMWRRE   87 (151)
Q Consensus        67 ~~~l~C~~~g~~~--~~~~W~~~   87 (151)
                      ++.|.|.+.+.+.  +.+.|++.
T Consensus       168 ~v~L~C~~~~~~~~~~~v~W~k~  190 (268)
T 1x9q_A          168 AMKLSCVTSGFTFGHYWMNWVRQ  190 (268)
T ss_dssp             CEEEEEEEESSCGGGCEEEEEEE
T ss_pred             cEEEEEEecCccccccEEEEEEe
Confidence            9999999988653  78999983

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.88  E-value=4.4e-09  Score=72.16  Aligned_cols=85  Identities=16%  Similarity=0.175  Sum_probs=51.1

Q ss_pred             CccccccCCeEEEEEEEcCC-CC---CCccceEEEEecc-cccee-EEee-cCCCCeeEeCCCCCceEeecCCeEEEEee
Q psy16421          1 MTEVSREHMGAYLCIASNGV-PP---SVSKRIMLIVQCQ-YFSKL-YIYT-SSMPPDILDYPTSSDIMVREGSNVSMRCA   73 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~-~~---~~~~~~~l~v~~~-~~~~~-~~~~-~~~~p~~~~~~~~~~~~~~~g~~~~l~C~   73 (151)
                      |.+++.+|+|.|.|.+.|.. +.   .......|.|... ..... ..+. ...++.+...+  ..+.+.+|+++.|.|.
T Consensus       105 I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p--~~~~v~~G~~v~L~C~  182 (291)
T 2gki_A          105 LSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSP--SSLAVSAGEKVTMSCK  182 (291)
T ss_dssp             ECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSC--SEEEEETTSCEEEEEE
T ss_pred             ECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCC--CEEEEcCCCcEEEEEE
Confidence            57899999999999999874 21   1112345555310 00000 0000 00123343333  4567889999999999


Q ss_pred             ecCCCCC------eEEEEeC
Q psy16421         74 ASGSPPP------SIMWRRE   87 (151)
Q Consensus        74 ~~g~~~~------~~~W~~~   87 (151)
                      +.+.+.+      .+.|++.
T Consensus       183 ~~~~~~~~~~~~~~v~W~k~  202 (291)
T 2gki_A          183 SSQSLFNSRTRKNYLAWYQQ  202 (291)
T ss_dssp             ESSCCEETTTTEECEEEEEE
T ss_pred             cCCccccccccceeEEEEEE
Confidence            9887765      8999984

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.87  E-value=1e-08  Score=68.34  Aligned_cols=29  Identities=21%  Similarity=0.575  Sum_probs=26.2

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|.+.+.+.+.+.|++
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~r   37 (246)
T 4dzb_B            9 SWVISKSGTSVKIECRSLDFQATTMFWYR   37 (246)
T ss_dssp             SEEEEETTSCEEEEEEESSSCCCSEEEEE
T ss_pred             cEEEEeCCCcEEEEeEecCCCceEEEEEE
Confidence            45778899999999999998999999998

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=98.87  E-value=2.8e-09  Score=71.64  Aligned_cols=77  Identities=18%  Similarity=0.445  Sum_probs=48.1

Q ss_pred             CccccccCCeEEEEEEEcCCC---CCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-
Q psy16421          1 MTEVSREHMGAYLCIASNGVP---PSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~---~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-   76 (151)
                      |.+++.+|+|.|.|.+.+...   ........|.|..         ....+|.+....  ....+.+|+.+.|.|.+.+ 
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~---------~~~~~P~i~~~~--~~~~~~~g~~v~L~C~~~g~  151 (253)
T 3liz_H           83 MSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSA---------AKTTPPSVYPLA--PGSAAQTNSMVTLGCLVKGY  151 (253)
T ss_dssp             ECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECS---------SCCBCCEEEEEC--C------CCEEEEEEEEEEE
T ss_pred             ECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEec---------cCCCCCeEEEec--CCcccCCCCcEEEEEEEeeE
Confidence            578999999999999988631   1223334566531         122455555322  2234557999999999987 


Q ss_pred             CCCC-eEEEEeCC
Q psy16421         77 SPPP-SIMWRREG   88 (151)
Q Consensus        77 ~~~~-~~~W~~~~   88 (151)
                      .|.+ .+.|++++
T Consensus       152 ~P~~~~v~W~~~~  164 (253)
T 3liz_H          152 FPEPVTVTWNSGS  164 (253)
T ss_dssp             BSSCCEEEEGGGT
T ss_pred             eCCCeEEEEEeCC
Confidence            6766 89999943

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.87  E-value=3.3e-10  Score=79.49  Aligned_cols=72  Identities=21%  Similarity=0.359  Sum_probs=53.0

Q ss_pred             CccccccCCe-EEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC
Q psy16421          1 MTEVSREHMG-AYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP   79 (151)
Q Consensus         1 i~~v~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~   79 (151)
                      |.+++.+|+| .|+|.|.|..| ..+..+.|.|             ..+|.+..      ....+|+.+.|.|.+.|.|.
T Consensus       216 i~~v~~~D~G~~Y~C~a~n~~g-~~~~~~~l~V-------------~~~P~i~~------~~~~~g~~v~l~C~~~g~P~  275 (347)
T 2ifg_A          216 LANVTSDLNRKNVTCWAENDVG-RAEVSVQVNV-------------SFPASVQL------HTAVEMHHWCIPFSVDGQPA  275 (347)
T ss_dssp             EESCCSTTTTCCEEECCEETTE-ECCEEECCCC-------------BEEEEEEE------CCCEESSSEEEEEEEEEESC
T ss_pred             EeeCChHHCCCeEEEEEEcCCC-CEEEEEEEEE-------------cCCCeeee------ccCccCceEEEEEEeeecCC
Confidence            4678999999 99999999987 3344444333             34555411      12357899999999999999


Q ss_pred             CeEEEEeCCeeeEe
Q psy16421         80 PSIMWRREGGEMIT   93 (151)
Q Consensus        80 ~~~~W~~~~~~~~~   93 (151)
                      |.+.|++ +++.+.
T Consensus       276 p~i~W~~-~g~~l~  288 (347)
T 2ifg_A          276 PSLRWLF-NGSVLN  288 (347)
T ss_dssp             CEEEEEE-TTEECC
T ss_pred             CcEEEEe-CCEECC
Confidence            9999999 566655

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.86  E-value=1.9e-08  Score=67.33  Aligned_cols=38  Identities=21%  Similarity=0.312  Sum_probs=29.3

Q ss_pred             CeeEeCCCCCceEeecCCeEEEEeeecCCC-----CCeEEEEeCC
Q psy16421         49 PDILDYPTSSDIMVREGSNVSMRCAASGSP-----PPSIMWRREG   88 (151)
Q Consensus        49 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~-----~~~~~W~~~~   88 (151)
                      +.+...+  ..+.+.+|+++.|.|.+.+.+     .+.+.|++.+
T Consensus        35 ~~v~~~p--~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~   77 (252)
T 3bkj_L           35 VLMTQTP--LSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQR   77 (252)
T ss_dssp             CCEEEEC--SEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEEC
T ss_pred             cEEEeCC--ceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEEC
Confidence            3344434  567788999999999999887     6899999843

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=98.86  E-value=2.8e-09  Score=69.95  Aligned_cols=81  Identities=16%  Similarity=0.270  Sum_probs=51.8

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC-CC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS-PP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-~~   79 (151)
                      |.+++.+|+|.|.|.+.|..+. ......+.+          +.+..+|.+...+. ....+.+|+.+.|.|.+.|. |.
T Consensus        70 I~~~~~~D~g~Y~C~~~~~~~~-~~~~~~i~~----------~~~~~~P~v~~~~~-~~~~~~~g~~~~L~C~~~g~~P~  137 (214)
T 1ow0_A           70 GCAEPWNHGKTFTCTAAYPESK-TPLTATLSK----------SGNTFRPEVHLLPP-PSEELALNELVTLTCLARGFSPK  137 (214)
T ss_dssp             TTHHHHHHTCEEEEEECCSSCS-SCEEEEEEC----------CSSCCCCEEEEECC-CTTTTTSSSEEEEEEEEEEESSS
T ss_pred             EeHHHcCCCCeEEEEEecCCCC-CceeEeecc----------CCCCCCCEEEecCC-CHHHhccCCceEEEEEEeeeECC
Confidence            4567788999999999987652 221222211          12345676644331 22235678999999999884 53


Q ss_pred             -CeEEEEeCCeeeEec
Q psy16421         80 -PSIMWRREGGEMITN   94 (151)
Q Consensus        80 -~~~~W~~~~~~~~~~   94 (151)
                       +.+.|++ +++.+..
T Consensus       138 ~~~v~W~k-~g~~l~~  152 (214)
T 1ow0_A          138 DVLVRWLQ-GSQELPR  152 (214)
T ss_dssp             CCEEEEEE-TTEECCG
T ss_pred             CcEEEEEE-CCEECCC
Confidence             5899999 6666543

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.86  E-value=2.8e-09  Score=70.44  Aligned_cols=30  Identities=20%  Similarity=0.520  Sum_probs=19.6

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~   87 (151)
                      ..+.+.+|+++.|.|.+.+.+.+.+.|++.
T Consensus        31 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~   60 (233)
T 3bqu_C           31 ASLSMSIGEKVTIRCITSTDIDDDMNWYQQ   60 (233)
T ss_dssp             SBC-------CCEEEEEEEEESSCEEEEEE
T ss_pred             CeEEEecCCCEEEEEecCCcCCCeEEEEEE
Confidence            467788999999999998877788999984

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.86  E-value=2.8e-08  Score=65.79  Aligned_cols=33  Identities=21%  Similarity=0.332  Sum_probs=28.5

Q ss_pred             CCceeEeecCCcEEEEeeecccCCCeeEEEcCC
Q psy16421        107 PSQLIGAHEGQQLVLECISEAYPKSVNYWTREK  139 (151)
Q Consensus       107 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~  139 (151)
                      .+....+.+|+++.|.|.+.+.|.+.+.|+|++
T Consensus       133 ~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~  165 (238)
T 2p1y_A          133 SPQSLTVWEGETAILNCSYENSAFDYFPWYQQF  165 (238)
T ss_dssp             ECSEEEEETTSCEEEEEECCCTTCCEEEEEEEC
T ss_pred             cCceEEEeCCCeEEEEEEEecCCCCcEEEEEEC
Confidence            345567889999999999999999999999963

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=98.85  E-value=4.4e-09  Score=70.62  Aligned_cols=84  Identities=19%  Similarity=0.403  Sum_probs=53.4

Q ss_pred             CccccccCCeEEEEEEEcCCCC--CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC-
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP--SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS-   77 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-   77 (151)
                      |.+++.+|+|.|.|.+.+..+.  .......|.|...       +....+|.+..... ....+.+|+.+.|.|.+.|. 
T Consensus        80 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~-------~~~~~~P~v~~~~~-~~~~~~~g~~~~L~C~~~g~~  151 (252)
T 1oga_E           80 VTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTED-------LKNVFPPEVAVFEP-SEAEISHTQKATLVCLATGFY  151 (252)
T ss_dssp             ECSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESC-------GGGCBCCEEEEECC-CHHHHHHHSEEEEEEEEEEEB
T ss_pred             ECcCChhhCEEEEEEEecCCccceeECCCEEEEEecc-------cCCCCCCeEEEECC-ChhhhccCCceEEEEEEeeEc
Confidence            5789999999999999986210  1122345655411       11124566644321 23344578999999999874 


Q ss_pred             CC-CeEEEEeCCeeeEe
Q psy16421         78 PP-PSIMWRREGGEMIT   93 (151)
Q Consensus        78 ~~-~~~~W~~~~~~~~~   93 (151)
                      |. +.+.|++ +++.+.
T Consensus       152 P~~~~v~W~~-~g~~l~  167 (252)
T 1oga_E          152 PDHVELSWWV-NGKEVH  167 (252)
T ss_dssp             SSCEEEEEEE-TTEEEC
T ss_pred             CCCcEEEEEE-CCEECC
Confidence            64 4899999 666654

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.84  E-value=7.3e-09  Score=68.79  Aligned_cols=81  Identities=16%  Similarity=0.312  Sum_probs=47.7

Q ss_pred             CccccccCCeEEEEEEEcCC--CC---CCccceEEEEeccccceeEEeecCCCCeeEe-CCCCCceEeecC-CeEEEEee
Q psy16421          1 MTEVSREHMGAYLCIASNGV--PP---SVSKRIMLIVQCQYFSKLYIYTSSMPPDILD-YPTSSDIMVREG-SNVSMRCA   73 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~--~~---~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~g-~~~~l~C~   73 (151)
                      |.+++.+|+|.|.|.+.+..  +.   .......|.|...         ...+|.+.. .+  . ..+..| +.+.|.|.
T Consensus        82 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~---------~~~~P~v~~~~p--~-~~~~~g~~~v~L~C~  149 (232)
T 1dn0_B           82 LSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSG---------SASAPTLFPLVS--C-ENSPSDTSSVAVGCL  149 (232)
T ss_dssp             ECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSS---------CCBCCEEEEEEC--C-------CCSEEEEEE
T ss_pred             ECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccC---------CCCCCceEEecc--c-cccCCCCCcEEEEEE
Confidence            67899999999999998421  11   1123446666410         112344432 22  1 123467 89999999


Q ss_pred             ecCC-CCC-eEEEEeCCeeeEe
Q psy16421         74 ASGS-PPP-SIMWRREGGEMIT   93 (151)
Q Consensus        74 ~~g~-~~~-~~~W~~~~~~~~~   93 (151)
                      +.+. |.+ .+.|++.+++.+.
T Consensus       150 ~~g~~P~p~~v~W~~~~g~~l~  171 (232)
T 1dn0_B          150 AQDFLPDSITFSWKYKNNSDIS  171 (232)
T ss_dssp             EEEEBSSCCEEEEEETTSCEEC
T ss_pred             EEEEeCCCeEEEEEcCCCCcee
Confidence            9874 766 9999994455543

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.84  E-value=2.9e-08  Score=64.74  Aligned_cols=28  Identities=14%  Similarity=0.406  Sum_probs=25.1

Q ss_pred             ceEeecCCeEEEEeeecCC-CCCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGS-PPPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~-~~~~~~W~~   86 (151)
                      .+.+.+|+++.|.|.+.+. +.+.+.|++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k   37 (218)
T 3s96_B            9 SASFSLGASAKLTCTLNSQHSTYTIEWYQ   37 (218)
T ss_dssp             EEEEETTSCEEEEEEECGGGTTCCEEEEE
T ss_pred             cEEECCCCcEEEEEECCCCCCCcEEEEEE
Confidence            4567889999999999998 889999998

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.84  E-value=3.7e-09  Score=70.99  Aligned_cols=85  Identities=15%  Similarity=0.320  Sum_probs=53.0

Q ss_pred             CccccccCCeEEEEEEEcCCCC-----CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeec
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP-----SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAAS   75 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~-----~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~   75 (151)
                      |.+++.+|+|.|.|.+.+..+.     .......|.|...       +....+|.+..... ....+.+|+.+.|.|.+.
T Consensus        78 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~-------~~~~~~P~v~~~~~-~~~~~~~g~~~~L~C~~~  149 (253)
T 3to4_D           78 LQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLED-------LKNVFPPEVAVFEP-SEAEISHTQKATLVCLAT  149 (253)
T ss_dssp             EEEESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESC-------STTCBCCEEEEEEC-CHHHHHHHSEEEEEEEEE
T ss_pred             EccCChhhCeEEEEEEecCCCCcccceEECCCEEEEEecC-------CCCCCCCeEEEeCC-ChhhcccCCceEEEEEEc
Confidence            5789999999999999876431     1122335555310       11124555443221 222334578999999998


Q ss_pred             C-CCCC-eEEEEeCCeeeEec
Q psy16421         76 G-SPPP-SIMWRREGGEMITN   94 (151)
Q Consensus        76 g-~~~~-~~~W~~~~~~~~~~   94 (151)
                      | .|.+ .+.|++ +++.+..
T Consensus       150 g~~P~~i~v~W~k-~g~~l~~  169 (253)
T 3to4_D          150 GFYPDHVELSWWV-NGKEVHS  169 (253)
T ss_dssp             EEBSSCEEEEEEE-TTEEECT
T ss_pred             eEECCcEEEEEEE-CCEECCC
Confidence            8 6666 899999 6776653

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.83  E-value=1.5e-09  Score=73.97  Aligned_cols=84  Identities=19%  Similarity=0.385  Sum_probs=53.2

Q ss_pred             CccccccCCeEEEEEEEcCCCC-----CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeec
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP-----SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAAS   75 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~-----~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~   75 (151)
                      |.+++.+|+|.|.|.+.|..+.     .......|.|...       +....+|.+..... ....+.+|+.+.|.|.+.
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~-------~~~~~~P~v~~~~~-~~~~~~~g~~v~L~C~~~  175 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTED-------LKNVFPPEVAVFEP-SEAEISHTQKATLVCLAT  175 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESC-------GGGCBCCEEEEEEC-CHHHHHHHSCCEEEEEEE
T ss_pred             EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecC-------CCCCCCCEEEEECC-CcccccCCCceEEEEEEe
Confidence            5789999999999999995320     1123345666421       01123565543221 223345789999999998


Q ss_pred             CC-CC-CeEEEEeCCeeeEe
Q psy16421         76 GS-PP-PSIMWRREGGEMIT   93 (151)
Q Consensus        76 g~-~~-~~~~W~~~~~~~~~   93 (151)
                      +. |. +.+.|++ +++.+.
T Consensus       176 g~~P~~~~v~W~k-~g~~l~  194 (279)
T 2wbj_D          176 GFYPDHVELSWWV-NGKEVH  194 (279)
T ss_dssp             EEBSSCEEEEEEE-TTEECC
T ss_pred             eEcCCCcEEEEEE-CCEECC
Confidence            86 43 6999999 666654

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.83  E-value=1.5e-08  Score=68.51  Aligned_cols=92  Identities=20%  Similarity=0.216  Sum_probs=60.2

Q ss_pred             CCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEe-------cccC---------------------
Q psy16421         46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMIT-------NSFN---------------------   97 (151)
Q Consensus        46 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~-------~~~~---------------------   97 (151)
                      ..+|.+...+  . ..+.+|++++|.|.+.+ +.+.+.|+|++.....       ....                     
T Consensus         5 ~~kP~i~~~P--~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   80 (257)
T 1b6u_A            5 HRKPSLLAHP--G-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCY   80 (257)
T ss_dssp             CCCCEECCBS--C-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEE
T ss_pred             CCCCEEEEcC--C-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEe
Confidence            3567776655  2 57889999999999975 5778999994432110       0000                     


Q ss_pred             --CC---------------------CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421         98 --NT---------------------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus        98 --~~---------------------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                        ..                     .+|.+...+. ..+.+|+++.|.|.+.+.| +.|.|+|+|..+.
T Consensus        81 a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~  147 (257)
T 1b6u_A           81 GSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHE  147 (257)
T ss_dssp             EECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCE
T ss_pred             EeccCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCCC-cEEEEEECCcccC
Confidence              00                     1122222222 2478999999999998864 6899999987554

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.82  E-value=1.9e-08  Score=67.11  Aligned_cols=82  Identities=16%  Similarity=0.234  Sum_probs=51.2

Q ss_pred             CceEeecCCeEEEEeeecCCCCCe-----EEEEeCCeee----------------------------------EecccC-
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPS-----IMWRREGGEM----------------------------------ITNSFN-   97 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~-----~~W~~~~~~~----------------------------------~~~~~~-   97 (151)
                      ..+.+.+|+++.|.|.+.+.|.+.     +.|++.+...                                  +....- 
T Consensus        11 ~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~   90 (248)
T 3pv7_A           11 GTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQ   90 (248)
T ss_dssp             SEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCC
T ss_pred             CCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCC
Confidence            345677899999999998877765     9999842111                                  000000 


Q ss_pred             -------------------------CCCCCeeeeCCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCc
Q psy16421         98 -------------------------NTVPPIVKIPSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKG  140 (151)
Q Consensus        98 -------------------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~  140 (151)
                                               +..+|.+...+.. ....|+.+.|.|.+.| +|.| .++|+|+|.
T Consensus        91 ~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~  159 (248)
T 3pv7_A           91 LEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQ-VGMKENEDKYMCESSGFYPEAINITWEKQTQ  159 (248)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECS
T ss_pred             HHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecCC-ccccCCCcEEEEEEccEECCCeEEEEEECCc
Confidence                                     2235555544332 2456788889999999 8998 899999875

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.82  E-value=5.4e-09  Score=70.78  Aligned_cols=79  Identities=19%  Similarity=0.338  Sum_probs=49.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCC--CccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-C
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPS--VSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-S   77 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~   77 (151)
                      |.+++.+|+|.|.|.+.+..+..  ....+.|.|...         ...+|.+....  ....+.+|+.+.|.|.+.+ .
T Consensus        89 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~---------~~~~P~v~~~~--p~~~v~~g~~v~L~C~~~g~~  157 (261)
T 2xqy_G           89 LSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSA---------KTTAPSVYPLA--PVCGDTTGSSVTLGCLVKGYF  157 (261)
T ss_dssp             ECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSS---------CCBCCEEEEEC--CCCC--CCSEEEEEEEEEEEB
T ss_pred             EcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccC---------CCCCCeEEEeC--CCccccCCCcEEEEEEEEeEe
Confidence            67899999999999999864211  123345665410         11245444322  1123567999999999987 4


Q ss_pred             CCC-eEEEEeCCeee
Q psy16421         78 PPP-SIMWRREGGEM   91 (151)
Q Consensus        78 ~~~-~~~W~~~~~~~   91 (151)
                      |.+ .+.|+++ ++.
T Consensus       158 P~~i~v~W~k~-g~~  171 (261)
T 2xqy_G          158 PEPVTLTWNSG-SLS  171 (261)
T ss_dssp             SSCCEEEEGGG-TCC
T ss_pred             CCCCEEEEecC-CCc
Confidence            665 9999994 443

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=98.80  E-value=8.4e-08  Score=61.72  Aligned_cols=105  Identities=16%  Similarity=0.313  Sum_probs=62.5

Q ss_pred             ccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CCCC
Q psy16421          2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SPPP   80 (151)
Q Consensus         2 ~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~~~   80 (151)
                      .+|+. | |.|.|.+.+. +......+.|.|..            .|..+...+  ....+.+|+.+.|.|.+.| .|..
T Consensus        55 ~~vs~-~-g~y~C~~~c~-~~~~~~~~~l~V~~------------~P~~v~i~~--~~~~~~~G~~~tL~C~v~g~~P~~  117 (185)
T 1iam_A           55 SNVQE-D-SQPMCYSNCP-DGQSTAKTFLTVYW------------TPERVELAP--LPSWQPVGKQLTLRCQVEGGAPRA  117 (185)
T ss_dssp             EEECS-C-BCCEEEEECS-SCEEEEECEEEEEB------------CCSEEEECC--CCSEECTTSEEEEEEEEECCBCGG
T ss_pred             EecCc-C-CEEEEEEECC-CCceEEEEEEEEeC------------CCCCCEEcc--CCccccCCCcEEEEEEcCCccCCC
Confidence            46652 4 9999998554 33566677777651            233333433  3345788999999999877 4443


Q ss_pred             --eEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeec
Q psy16421         81 --SIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISE  126 (151)
Q Consensus        81 --~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~  126 (151)
                        .+.|++ +++.+.............  .......+.+-..|+|.|.
T Consensus       118 ~l~i~w~k-g~~~l~~~~~~~~~~~~t--l~~~~~reD~g~~~sC~A~  162 (185)
T 1iam_A          118 QLTVVLLR-GEKELKREPAVGEPAEVT--TTVLVRRDHHGAQFSCRTE  162 (185)
T ss_dssp             GEEEEEEE-TTEEEEEEECCTTTEEEE--EEEECCSSCSSCEEEEEEE
T ss_pred             CcEEEEEe-CCEEcccccCCCccccEE--EEEeceeccCCCeEEEEEE
Confidence              489999 666655322111111111  1111223566779999986

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=98.80  E-value=4.2e-09  Score=70.41  Aligned_cols=80  Identities=18%  Similarity=0.288  Sum_probs=50.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~~   79 (151)
                      |.+++.+|+|.|+|.+.|..+.. .....+...         ..+..+|.+...+.  ......|+.+.|.|.+.| .|.
T Consensus        86 I~~~~~~D~g~Y~C~~~~~~~~~-~~~~~v~~~---------~~~~~~P~v~v~~~--~~~~~~g~~~~L~C~~~g~~P~  153 (239)
T 1i1c_A           86 IVERDWLNGKTFKCKVNSGAFPA-PIEKSISKP---------EGTPRGPQVYTMAP--PKEEMTQSQVSITCMVKGFYPP  153 (239)
T ss_dssp             CCHHHHHTTCCEEEEEECSSSSS-CEEEEECCC---------SSCCBCCEEEEECC--CGGGGGSSEEEEEEEEEEEBSS
T ss_pred             EEhhHccCCCeEEEEEecccCCC-CcEEEEecC---------CCCCcCCEEEEECC--ChHHhcCCcEEEEEEEeeeECC
Confidence            46678889999999999987632 111121110         12345676655442  222235789999999988 454


Q ss_pred             -CeEEEEeCCeeeEe
Q psy16421         80 -PSIMWRREGGEMIT   93 (151)
Q Consensus        80 -~~~~W~~~~~~~~~   93 (151)
                       ..+.|++ +++.+.
T Consensus       154 ~~~v~W~k-~g~~l~  167 (239)
T 1i1c_A          154 DIYTEWKM-NGQPQE  167 (239)
T ss_dssp             CCEEEEEE-TTEECS
T ss_pred             CeEEEEEE-CCEECC
Confidence             4899999 666653

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.80  E-value=4.8e-09  Score=72.74  Aligned_cols=80  Identities=11%  Similarity=0.213  Sum_probs=49.8

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~~   79 (151)
                      |.+++.+|+|.|+|.|.|..+ .  ....+.|...       .....+|.+...+.  ......|+.+.|.|.+.| .|.
T Consensus       182 I~~~~~~D~G~Y~C~a~n~~~-~--~~~~~~v~~~-------~~~~~~P~v~~~~~--~~~~~~g~~~~l~C~~~g~~p~  249 (323)
T 2wqr_A          182 VGTRDWIEGETYQCRVTHPHL-P--RALMRSTTKT-------SGPRAAPEVYAFAT--PEWPGSRDKRTLACLIQNFMPE  249 (323)
T ss_dssp             CCHHHHHTTCCEEEEEECTTS-S--SCEEEEECCC-------CSCCBCCEEEEEEC--CCCTTCTTEEEEEEEEEEEBSS
T ss_pred             ECHHHccCCCCEEEEEECCCC-C--CCeeeEEEcc-------CCCCCCCEEEEeCC--ChHHhcCCcEEEEEEeeeeeCC
Confidence            567788999999999999764 1  2234443210       00224565543321  111223999999999988 444


Q ss_pred             C-eEEEEeCCeeeEe
Q psy16421         80 P-SIMWRREGGEMIT   93 (151)
Q Consensus        80 ~-~~~W~~~~~~~~~   93 (151)
                      + .+.|++ +++.+.
T Consensus       250 ~~~v~W~k-~g~~l~  263 (323)
T 2wqr_A          250 DISVQWLH-NEVQLP  263 (323)
T ss_dssp             CCEEEEEE-TTEECC
T ss_pred             CcEEEEEE-CCEECC
Confidence            3 799999 666654

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.79  E-value=7.1e-09  Score=67.19  Aligned_cols=29  Identities=17%  Similarity=0.291  Sum_probs=25.6

Q ss_pred             EeecCCcEEEEeee-cccCCCeeEEEcCCc
Q psy16421        112 GAHEGQQLVLECIS-EAYPKSVNYWTREKG  140 (151)
Q Consensus       112 ~~~~g~~~~l~C~~-~g~p~~~~~W~k~~~  140 (151)
                      .+.+|+.+.|.|.+ .|.|.|.+.|+|++.
T Consensus       132 ~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~  161 (214)
T 3jz7_A          132 SEEIGNDFKLKCEPKEGSLPLQFEWQKLSD  161 (214)
T ss_dssp             CCBTTCCEEEEEECSBCCSSCEEEEEECST
T ss_pred             ceecCCcEEEEecCCCCCCCCEEEEEECCC
Confidence            46789999999999 899999999999643

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=98.79  E-value=1e-08  Score=68.09  Aligned_cols=34  Identities=18%  Similarity=0.259  Sum_probs=25.8

Q ss_pred             CceEeecCCeEEEEeeecC-CCC-C-eEEEEeCCeeeE
Q psy16421         58 SDIMVREGSNVSMRCAASG-SPP-P-SIMWRREGGEMI   92 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g-~~~-~-~~~W~~~~~~~~   92 (151)
                      ....+.+|+.+.|.|.+.| .|. | .+.|++ +++.+
T Consensus        21 ~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~-~g~~~   57 (231)
T 2w59_A           21 SPGELYISLDAKLRCLVVNLPSDSSLSVTWTR-EKSGN   57 (231)
T ss_dssp             CHHHHHTSCCCEEEEEEEEESCCTTCEEEEEC-SSSSC
T ss_pred             ChhhcccCCceEEEEEEeCccCCCCeEEEEEc-CCeec
Confidence            4456678999999999988 463 4 999998 55444

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.79  E-value=7.9e-08  Score=64.00  Aligned_cols=34  Identities=15%  Similarity=0.307  Sum_probs=28.9

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +...+....+.+|+++.|.|.+.+.|.+.+.|+|
T Consensus       138 ~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k  171 (247)
T 2ghw_B          138 LTQSPATLSLSPGERATLSCRASQSVRSNLAWYQ  171 (247)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEE
T ss_pred             EEccCCEEEecCCCcEEEEEEeCCCccceEEEEE
Confidence            3444556678899999999999999999999999

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.79  E-value=7.5e-08  Score=64.21  Aligned_cols=30  Identities=23%  Similarity=0.453  Sum_probs=26.7

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~   87 (151)
                      ..+.+.+|+++.|.|.+.+.+.+.+.|++.
T Consensus        12 ~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~   41 (250)
T 3esu_F           12 SSLSASLGDRVTISCRASQDIRNYLNWYQQ   41 (250)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CEEEeeCCCcEEEEEEecccCCceEEEEEE
Confidence            456788999999999999999999999983

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.78  E-value=1.1e-08  Score=69.82  Aligned_cols=83  Identities=13%  Similarity=0.203  Sum_probs=49.8

Q ss_pred             CccccccCCeEEEEEEEcC--------CCCCCccceEEEEeccccc--eeEEeecCCCCeeEeCCCCCceEeecCCeEEE
Q psy16421          1 MTEVSREHMGAYLCIASNG--------VPPSVSKRIMLIVQCQYFS--KLYIYTSSMPPDILDYPTSSDIMVREGSNVSM   70 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~--------~~~~~~~~~~l~v~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l   70 (151)
                      |.+++.+|+|.|.|.+.+.        ..........|.|......  .........++.+...+  . +.+.+|+++.|
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p--~-~~v~~G~~v~L  159 (280)
T 3fku_X           83 LRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPP--S-VSKGLRQTATL  159 (280)
T ss_dssp             ECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCS--E-EEECTTCCEEE
T ss_pred             ECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCC--c-EEEecCCCEEE
Confidence            5789999999999999886        1112233445555310000  00000011234444433  3 77889999999


Q ss_pred             EeeecC-CC-CCeEEEEe
Q psy16421         71 RCAASG-SP-PPSIMWRR   86 (151)
Q Consensus        71 ~C~~~g-~~-~~~~~W~~   86 (151)
                      .|.+.+ .+ .+.+.|++
T Consensus       160 ~C~~~~~~~~~~~v~W~r  177 (280)
T 3fku_X          160 TCTGNSNNVGNQGAAWLQ  177 (280)
T ss_dssp             EEECCCCCCCTTCCEEEE
T ss_pred             EEEecCCCCCCceEEEEE
Confidence            999987 44 47899987

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.78  E-value=2.4e-08  Score=70.93  Aligned_cols=81  Identities=11%  Similarity=0.180  Sum_probs=52.9

Q ss_pred             eecCCeEEEEeeecCC-CC---CeEEEEeCCeeeEeccc--------C--------------------------------
Q psy16421         62 VREGSNVSMRCAASGS-PP---PSIMWRREGGEMITNSF--------N--------------------------------   97 (151)
Q Consensus        62 ~~~g~~~~l~C~~~g~-~~---~~~~W~~~~~~~~~~~~--------~--------------------------------   97 (151)
                      +..|+++.|.|.+.|. |.   ..+.|+++++.......        .                                
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  259 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  259 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence            6779999999999886 32   36999995533211100        0                                


Q ss_pred             -----------CCCCCeeeeCCceeEeecCCcEEEEeeeccc-C-CCeeEEEcCCcee
Q psy16421         98 -----------NTVPPIVKIPSQLIGAHEGQQLVLECISEAY-P-KSVNYWTREKGDM  142 (151)
Q Consensus        98 -----------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p-~~~~~W~k~~~~~  142 (151)
                                 ...+|.+.+.+.......|+.+.|.|.+.|. | .+.|+|+|||..+
T Consensus       260 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~  317 (376)
T 2aty_A          260 PIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPA  317 (376)
T ss_pred             ceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEEC
Confidence                       1123444444333334468899999999995 4 3579999998765

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.78  E-value=2.4e-08  Score=64.95  Aligned_cols=43  Identities=12%  Similarity=0.248  Sum_probs=29.8

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccC--CCeeEEEcCCceec
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYP--KSVNYWTREKGDMI  143 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~k~~~~~~  143 (151)
                      +|.+...+....+.+|+.+.|.|.+.|.+  .+.+.|+|+|..+.
T Consensus       111 ~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  155 (211)
T 3tv3_L          111 APSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVK  155 (211)
T ss_dssp             CCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             CCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecC
Confidence            34444333333334699999999999863  46799999987664

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.78  E-value=1e-08  Score=66.87  Aligned_cols=57  Identities=16%  Similarity=0.321  Sum_probs=36.8

Q ss_pred             cCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC----CCCeeeeCCceeEe-ecCCcEEEEeeecc
Q psy16421         64 EGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT----VPPIVKIPSQLIGA-HEGQQLVLECISEA  127 (151)
Q Consensus        64 ~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~----~~p~~~~~~~~~~~-~~g~~~~l~C~~~g  127 (151)
                      +|+++.|.|.  +.|.|.+.|++ ++..+.......    ....+.+.    .+ ...+.....|.+..
T Consensus       127 ~G~~v~L~C~--g~p~p~i~W~k-~~~~l~~~~~~~~~~~~~~~L~I~----~v~~~~D~G~Y~C~A~N  188 (204)
T 1sy6_A          127 SGTTVILTCP--QYPGSEILWQH-NDKNIGGDEDDKNIGSDEDHLSLK----EFSELEQSGYYVCYPRG  188 (204)
T ss_dssp             ETTEEEEECS--CCCSSCEEEEE-TTEEESCCTTCTTEEEETTEEEET----TCCHHHHCEEEEEEETT
T ss_pred             cCCcEEEEcC--CCCCCceEEEE-CCEECCCccCCceEecCCCEEEEe----eCCccccCEEEEEEecc
Confidence            8999999999  77889999999 566654321100    01122222    13 45677899999864

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.78  E-value=2e-08  Score=65.39  Aligned_cols=30  Identities=20%  Similarity=0.516  Sum_probs=25.7

Q ss_pred             EeecCCcEEEEeeeccc-CCC-eeEEEcCCce
Q psy16421        112 GAHEGQQLVLECISEAY-PKS-VNYWTREKGD  141 (151)
Q Consensus       112 ~~~~g~~~~l~C~~~g~-p~~-~~~W~k~~~~  141 (151)
                      .+.+|+.+.|.|.+.|. |.| .++|++++..
T Consensus       129 ~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~  160 (210)
T 3d9a_H          129 AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  160 (210)
T ss_dssp             SCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             ccccCCcEEEEEEEeeEecCCcEEEEeeCCcc
Confidence            35689999999999986 888 8999998764

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.78  E-value=4e-08  Score=64.15  Aligned_cols=30  Identities=13%  Similarity=0.377  Sum_probs=24.4

Q ss_pred             cCCcEEEEeeecc-cCCC-eeEEEcCCceecc
Q psy16421        115 EGQQLVLECISEA-YPKS-VNYWTREKGDMIA  144 (151)
Q Consensus       115 ~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~~  144 (151)
                      .|+.+.|.|.+.| .|++ .++|+|+|..+..
T Consensus       128 ~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~  159 (216)
T 2xzc_L          128 KSGTASVVCLLNNFYPREAKVQWKVDNALQSG  159 (216)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCS
T ss_pred             cCCcEEEEEEEEeEcCCceEEEEEECCeecCC
Confidence            5889999999998 5555 7999999876543

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.77  E-value=3.2e-09  Score=71.77  Aligned_cols=79  Identities=19%  Similarity=0.427  Sum_probs=43.6

Q ss_pred             CccccccCCeEEEEEEEcCCCC------------CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP------------SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNV   68 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~------------~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~   68 (151)
                      |.+++.+|+|.|.|.+.+..+.            .......|.|...         ...+|.+....  ....+.+|+.+
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~---------~~~~P~v~~~~--p~~~~~~g~~v  151 (257)
T 3bn9_D           83 MSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSA---------STKGPSVFPLA--PSSKSTSGGTA  151 (257)
T ss_dssp             EESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSS---------CCBCCEECCCC--C----------
T ss_pred             ECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCC---------CCcCCcEEEec--CcccccCCCcE
Confidence            5789999999999999987541            0112345655310         11245543322  11235678999


Q ss_pred             EEEeeecCC-CCC-eEEEEeCCeee
Q psy16421         69 SMRCAASGS-PPP-SIMWRREGGEM   91 (151)
Q Consensus        69 ~l~C~~~g~-~~~-~~~W~~~~~~~   91 (151)
                      .|.|.+.+. |.+ .+.|++ +++.
T Consensus       152 ~L~C~~~g~~P~pi~v~W~k-~g~~  175 (257)
T 3bn9_D          152 ALGCLVKDYFPEPVTVSWNS-GALT  175 (257)
T ss_dssp             -CCCEEEEEBSSCCEEEETT-TTCC
T ss_pred             EEEEEEeeEECCCcEEEEee-CCCc
Confidence            999999874 766 899999 4544

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.77  E-value=1.1e-08  Score=58.92  Aligned_cols=48  Identities=13%  Similarity=0.178  Sum_probs=40.8

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccCC
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG  146 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~~  146 (151)
                      ..+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+|+|..+....
T Consensus         3 ~~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~   50 (100)
T 2kdg_A            3 MGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDD   50 (100)
T ss_dssp             CEEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCS
T ss_pred             CCCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCC
Confidence            346777777888889999999999999999999999999987765543

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.75  E-value=5.7e-08  Score=63.50  Aligned_cols=39  Identities=21%  Similarity=0.566  Sum_probs=26.8

Q ss_pred             CeeeeCCceeEeecCCcEEEEeee-cccCCCeeEEEcCCce
Q psy16421        102 PIVKIPSQLIGAHEGQQLVLECIS-EAYPKSVNYWTREKGD  141 (151)
Q Consensus       102 p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~k~~~~  141 (151)
                      |.+...+ ...+.+|+.+.|.|.+ .|.|.|.+.|+++++.
T Consensus       112 p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~  151 (222)
T 4i0k_A          112 PSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGV  151 (222)
T ss_dssp             CEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSC
T ss_pred             CcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCc
Confidence            4444433 3357789999999999 7899999999995443

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=98.75  E-value=2e-08  Score=58.13  Aligned_cols=47  Identities=11%  Similarity=0.125  Sum_probs=40.9

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      ..+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+|++..+..+
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~   52 (103)
T 3qp3_A            6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQES   52 (103)
T ss_dssp             CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCC
T ss_pred             CCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCC
Confidence            45678888888889999999999999999999999999998766543

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=98.74  E-value=2.2e-08  Score=57.44  Aligned_cols=45  Identities=11%  Similarity=0.073  Sum_probs=39.7

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      .+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+|+|..+..
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~   48 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIER   48 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCC
Confidence            467888888888999999999999999999999999999876654

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.74  E-value=6.1e-08  Score=62.16  Aligned_cols=28  Identities=11%  Similarity=0.274  Sum_probs=24.5

Q ss_pred             eecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421        113 AHEGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      +.+|+++.|.|.+   |.|.+.|+|||..+.
T Consensus       119 ~~~G~~v~l~C~~---p~p~i~W~k~g~~i~  146 (186)
T 1jbj_A          119 SRGDGSVLLTCGL---TDKTIKWLKDGSIIS  146 (186)
T ss_dssp             CSSSCEEEEECSS---SCSCEEEEETTEECC
T ss_pred             cCCCCeEEEEeeC---CCCeEEEEECCEECc
Confidence            3499999999999   889999999987764

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.74  E-value=1.1e-07  Score=64.51  Aligned_cols=37  Identities=22%  Similarity=0.502  Sum_probs=29.7

Q ss_pred             CeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeC
Q psy16421         49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRRE   87 (151)
Q Consensus        49 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~   87 (151)
                      +.+...+  ..+.+.+|+++.|.|.+.+.+.+.+.|++.
T Consensus        13 ~~v~~~p--~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~   49 (276)
T 3auv_A           13 IQMTQSP--SSLSASVGDRVTITCRASQDVSTAVAWYQQ   49 (276)
T ss_dssp             CCEEEEC--SEEECCTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             eeEEeCC--CeEEEcCCCCEEEEeEcCCCCCCcEEEEEE
Confidence            3344434  567788999999999999988999999984

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=98.74  E-value=1.9e-08  Score=57.26  Aligned_cols=40  Identities=23%  Similarity=0.243  Sum_probs=36.4

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCC
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREK  139 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~  139 (151)
                      .+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|+|++
T Consensus         1 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~   40 (93)
T 1wit_A            1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGD   40 (93)
T ss_dssp             CCCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECST
T ss_pred             CCCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECC
Confidence            3678877778889999999999999999999999999998

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.74  E-value=1e-07  Score=63.18  Aligned_cols=81  Identities=16%  Similarity=0.279  Sum_probs=55.6

Q ss_pred             CceEeecCCeEEEEeeecCCC----CCeEEEEeCC-ee---eE--------------------------ecccC------
Q psy16421         58 SDIMVREGSNVSMRCAASGSP----PPSIMWRREG-GE---MI--------------------------TNSFN------   97 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~----~~~~~W~~~~-~~---~~--------------------------~~~~~------   97 (151)
                      ..+.+.+|+++.|.|.+.+.+    .+.+.|++.+ +.   .+                          ....-      
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   88 (240)
T 1moe_A            9 ASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVA   88 (240)
T ss_dssp             SEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhCE
Confidence            457788999999999999987    7889999842 11   01                          00000      


Q ss_pred             ---------------------CCC------CCeeeeCCceeEeecCCcEEEEeeecccCC--CeeEEEcC
Q psy16421         98 ---------------------NTV------PPIVKIPSQLIGAHEGQQLVLECISEAYPK--SVNYWTRE  138 (151)
Q Consensus        98 ---------------------~~~------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~k~  138 (151)
                                           +..      ++.+...+....+.+|+++.|.|.+.|.|.  +.+.|+|+
T Consensus        89 ~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~  158 (240)
T 1moe_A           89 TYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQ  158 (240)
T ss_dssp             EEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             EEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEE
Confidence                                 011      112333345567889999999999999874  58999995

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=98.74  E-value=2e-08  Score=57.62  Aligned_cols=45  Identities=24%  Similarity=0.444  Sum_probs=39.7

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      .+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+|++..+..
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~   48 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRP   48 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCC
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCC
Confidence            467888888888999999999999999999999999999776654

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.73  E-value=2.1e-07  Score=62.61  Aligned_cols=35  Identities=14%  Similarity=0.096  Sum_probs=28.7

Q ss_pred             eCCceeEeecCCcEEEEeeecccCCC-----eeEEEc--CCc
Q psy16421        106 IPSQLIGAHEGQQLVLECISEAYPKS-----VNYWTR--EKG  140 (151)
Q Consensus       106 ~~~~~~~~~~g~~~~l~C~~~g~p~~-----~~~W~k--~~~  140 (151)
                      ..+....+.+|+++.|.|.+.+.|.+     .+.|+|  +|.
T Consensus       126 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~  167 (256)
T 1nqb_A          126 QTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQ  167 (256)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTS
T ss_pred             ecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCC
Confidence            34556678999999999999998876     899999  554

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.73  E-value=1.2e-08  Score=68.09  Aligned_cols=82  Identities=13%  Similarity=0.235  Sum_probs=49.3

Q ss_pred             CccccccCCeEEEEEEEcCCC-C-----CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeee
Q psy16421          1 MTEVSREHMGAYLCIASNGVP-P-----SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA   74 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~-~-----~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~   74 (151)
                      |.+++.+|+|.|.|.+.+... .     .......|.|.....      ....+|...... +....+.+|+.+.|.|.+
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~------~~~~~p~~~v~~-p~~~~~~~g~~v~L~C~~  156 (242)
T 1hxm_B           84 IHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQL------DADVSPKPTIFL-PSIAETKLQKAGTYLCLL  156 (242)
T ss_dssp             ECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCC------CSCCSCBCCCCC-CCGGGGGSSSCEEEEEEE
T ss_pred             ECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEccccc------CCCcCCCceEEC-CChhhcccCCCceEEEEE
Confidence            578999999999999988631 0     112345666642110      000123222211 123345579999999999


Q ss_pred             cCC-CC-CeEEEEeCCe
Q psy16421         75 SGS-PP-PSIMWRREGG   89 (151)
Q Consensus        75 ~g~-~~-~~~~W~~~~~   89 (151)
                      .|. |. +.+.|++++.
T Consensus       157 ~g~~P~~~~v~W~~~~~  173 (242)
T 1hxm_B          157 EKFFPDVIKIHWEEKKS  173 (242)
T ss_dssp             EEESSCCEEEEEEESSS
T ss_pred             eeEECCCeEEEEEcCCC
Confidence            875 54 7899999543

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.70  E-value=1.5e-07  Score=62.45  Aligned_cols=28  Identities=14%  Similarity=0.493  Sum_probs=24.4

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|.+.+ +.+.+.|++
T Consensus        10 ~~v~v~~G~~v~L~C~~~~-~~~~v~W~k   37 (240)
T 3q5y_A           10 RHIIKEKGGRSVLTCIPIS-GHSNVVWYQ   37 (240)
T ss_dssp             SEEEEETTCCEEEEEECCT-TCCEEEEEE
T ss_pred             ceeeecCCCcEEEEEEeCC-CCceEEEEE
Confidence            4577889999999999876 778999998

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.70  E-value=9.6e-08  Score=64.16  Aligned_cols=36  Identities=14%  Similarity=0.274  Sum_probs=29.3

Q ss_pred             eeeeCCceeEeecCCcEEEEeeeccc-CCCeeEEEcC
Q psy16421        103 IVKIPSQLIGAHEGQQLVLECISEAY-PKSVNYWTRE  138 (151)
Q Consensus       103 ~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~k~  138 (151)
                      .+...+....+.+|+++.|.|.+.+. |.+.+.|+|.
T Consensus       138 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~  174 (259)
T 3omz_A          138 KVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKR  174 (259)
T ss_dssp             EEECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEE
T ss_pred             eeEEeCCEEEEcCCCCEEEEEECCCccCCceEEEeee
Confidence            44555666788999999999998874 7888999984

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=98.69  E-value=2.7e-08  Score=66.02  Aligned_cols=81  Identities=17%  Similarity=0.253  Sum_probs=49.3

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC-C-
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS-P-   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-~-   78 (151)
                      |.+++.+|+|.|+|.+.|..+.   ..+.+.|....       ....+|.+..... .... ..+..+.|.|.+.|. | 
T Consensus        81 I~~~~~~D~g~Y~C~~~~~~~~---~~~~~~v~~~~-------~~~~~P~v~v~~~-~~~~-~~~~~~~L~C~~~g~~P~  148 (231)
T 2w59_A           81 VSTQDWLSGERFTCTVQHEELP---LPLSKSVYRNT-------GPTTPPLIYPFAP-HPEE-LSLSRVTLSCLVRGFRPR  148 (231)
T ss_dssp             CCHHHHHTTCCEEEEEECTTCS---SCEEEEECCCC-------SCCBCCEEEEECC-CGGG-GGSSEEEEEEEEEEEBSS
T ss_pred             ecchhccCCCEEEEEEEcCCCC---CceEEEEecCC-------CCCcCCEEEEeCC-CHHH-hccCceEEEEEEEeccCC
Confidence            4567788999999999998652   33444442100       0123555543221 1111 235679999999884 4 


Q ss_pred             CCeEEEEeCCeeeEec
Q psy16421         79 PPSIMWRREGGEMITN   94 (151)
Q Consensus        79 ~~~~~W~~~~~~~~~~   94 (151)
                      .+.+.|++ +++.+..
T Consensus       149 ~~~v~W~k-~g~~l~~  163 (231)
T 2w59_A          149 DIEIRWLR-DHRAVPA  163 (231)
T ss_dssp             CCEEEEEE-TTEECCG
T ss_pred             CcEEEEEE-CCEECCC
Confidence            47899999 6776653

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.69  E-value=1.6e-07  Score=62.60  Aligned_cols=30  Identities=27%  Similarity=0.390  Sum_probs=26.6

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~   87 (151)
                      ..+.+.+|+++.|.|.+.+.+.+.+.|++.
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~   38 (242)
T 2znx_A            9 ATLSVTPGNSVSLSCRASQSIGNNLHXYQQ   38 (242)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CeEEEcCCCcEEEEEEeCCCCCceEEEEEe
Confidence            457788999999999999988899999984

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=4.9e-08  Score=56.14  Aligned_cols=45  Identities=20%  Similarity=0.259  Sum_probs=40.6

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      ..+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+|++..+.
T Consensus         6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~   50 (100)
T 2edj_A            6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFP   50 (100)
T ss_dssp             CSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEES
T ss_pred             CCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECC
Confidence            467888888888899999999999999999999999999987765

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.69  E-value=1.9e-08  Score=65.51  Aligned_cols=74  Identities=20%  Similarity=0.334  Sum_probs=43.9

Q ss_pred             cCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC-CC-CeEEE
Q psy16421          7 EHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS-PP-PSIMW   84 (151)
Q Consensus         7 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-~~-~~~~W   84 (151)
                      +|+|.|+|.|.|..+.. .....+.+.         ..+..+|.+...+. .. ....|..+.|.|.+.|. |. +.+.|
T Consensus        78 ~d~g~Y~C~a~n~~~~~-~~~~~v~~~---------~~~~~~P~v~~~~~-~~-~~~~~~~~~L~C~~~g~~P~~~~v~W  145 (207)
T 1l6x_A           78 LNGKEYKCKVSNKALPA-PIEKTISKA---------KGQPREPQVYTLPP-SR-DELTKNQVSLTCLVKGFYPSDIAVEW  145 (207)
T ss_dssp             HTTCCEEEEEECTTSSS-CEEEEECCC---------CSCCBCCEEEEECC-CG-GGGGSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             cCCceEEEEEEcCcCCc-ceEEEeccC---------CCCCcCCEEEEECC-Ch-HHhcCCcEEEEEEEeCeECCCeEEEE
Confidence            34999999999986632 111122110         02335666554331 11 12346679999999884 54 48999


Q ss_pred             EeCCeeeEe
Q psy16421         85 RREGGEMIT   93 (151)
Q Consensus        85 ~~~~~~~~~   93 (151)
                      ++ +++.+.
T Consensus       146 ~k-~g~~~~  153 (207)
T 1l6x_A          146 ES-NGQPEN  153 (207)
T ss_dssp             EE-TTEEEC
T ss_pred             EE-CCeecc
Confidence            99 566654

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.69  E-value=6.5e-08  Score=61.54  Aligned_cols=30  Identities=13%  Similarity=0.016  Sum_probs=25.7

Q ss_pred             cCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        115 EGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       115 ~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      .+.++.|.|.+.|.|.|.+.|+|+|..+..
T Consensus       109 ~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~  138 (176)
T 1hng_A          109 ECSNATLTCEVLEGTDVELKLYQGKEHLRS  138 (176)
T ss_dssp             ETTTTEEEEECSSCSSCEEEEEETTEEEEE
T ss_pred             cCCcEEEEEEecCCCCcEEEEEECCEECCC
Confidence            456799999999999999999999876654

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=98.69  E-value=1.6e-07  Score=62.42  Aligned_cols=28  Identities=21%  Similarity=0.439  Sum_probs=24.2

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.| ..+.+.+.+.|++
T Consensus        10 ~~v~v~~G~~v~L~C-~~~~~~~~v~W~r   37 (245)
T 4ei6_B           10 SHQIIDMGQMVTLNC-DPVSNHLYFYWYK   37 (245)
T ss_dssp             SEEEEETTCCEEEEE-ECCTTCCEEEEEE
T ss_pred             ceEEecCCCCEEEEE-EcCCCCCEEEEEE
Confidence            457888999999999 6677889999998

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.68  E-value=4.8e-08  Score=57.66  Aligned_cols=46  Identities=9%  Similarity=0.052  Sum_probs=40.5

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ..+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+|++..+..
T Consensus         5 ~~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~   50 (114)
T 2cqv_A            5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQE   50 (114)
T ss_dssp             CCCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCC
T ss_pred             CCCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcC
Confidence            3578888888888999999999999999999999999999876653

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=2.6e-08  Score=57.21  Aligned_cols=46  Identities=22%  Similarity=0.278  Sum_probs=40.5

Q ss_pred             CCCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421         98 NTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus        98 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      +..+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+|+|..+.
T Consensus         8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~   53 (99)
T 2yr3_A            8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQ   53 (99)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCS
T ss_pred             cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECc
Confidence            3567888888888899999999999999999999999999976654

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=98.67  E-value=2.3e-08  Score=59.25  Aligned_cols=47  Identities=17%  Similarity=0.328  Sum_probs=41.1

Q ss_pred             CCCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         98 NTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        98 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      +..+|.|...+....+.+|+++.|.|.+.|.|.|.++|+|++..+..
T Consensus         6 ~~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~   52 (117)
T 2v9t_A            6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVET   52 (117)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCC
T ss_pred             ccCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccc
Confidence            34678888888888899999999999999999999999999776654

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=98.67  E-value=2e-07  Score=71.42  Aligned_cols=77  Identities=17%  Similarity=0.239  Sum_probs=56.9

Q ss_pred             CCeEEEEeeecCCCCCeEEEEeCCeee-------Eecc---cC----------------------------CCCCCeeee
Q psy16421         65 GSNVSMRCAASGSPPPSIMWRREGGEM-------ITNS---FN----------------------------NTVPPIVKI  106 (151)
Q Consensus        65 g~~~~l~C~~~g~~~~~~~W~~~~~~~-------~~~~---~~----------------------------~~~~p~~~~  106 (151)
                      ..++.+.|.+.|.|.|.+.|.+++.+.       +...   ..                            ...+|.|. 
T Consensus        91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~~-  169 (731)
T 2v5y_A           91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFL-  169 (731)
T ss_dssp             SEEEEEEEEETTCCCCSEEEEECCCCCSSCEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEEC-
T ss_pred             cceEEEEEecCCCCccceeEEEeCCcCCceeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccccccc-
Confidence            458999999999999999999954321       1001   00                            12456666 


Q ss_pred             CCceeEeecCCcEEEEeeecccCCCeeE-EE--cCCcee
Q psy16421        107 PSQLIGAHEGQQLVLECISEAYPKSVNY-WT--REKGDM  142 (151)
Q Consensus       107 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~-W~--k~~~~~  142 (151)
                      .+....+..|+++.|.|.+.|.|.|.+. |+  +||..+
T Consensus       170 ~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l  208 (731)
T 2v5y_A          170 RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDA  208 (731)
T ss_dssp             CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCE
T ss_pred             cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccc
Confidence            4556889999999999999999999987 88  776544

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=98.67  E-value=2.6e-08  Score=65.90  Aligned_cols=78  Identities=18%  Similarity=0.408  Sum_probs=44.9

Q ss_pred             CccccccCCeEEEEEEEcCCCC-------CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEee
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP-------SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCA   73 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~-------~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~   73 (151)
                      |.+++.+|+|.|.|.+.+..+.       .......|.|..         ....+|.+....  ....+..|+.+.|.|.
T Consensus        87 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~---------~~~~~P~v~~~~--~~~~~~~g~~v~L~C~  155 (232)
T 3qhz_H           87 MTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSS---------ASTKGPSVFPLA--PSSKSTSGGTAALGCL  155 (232)
T ss_dssp             ECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECS---------SCCBCCEEEEEC--C-------CEEEEEEE
T ss_pred             ECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEec---------CCCCCCEEEEec--ccccccCCCcEEEEEE
Confidence            5789999999999999876310       122334555531         122455554222  1234556999999999


Q ss_pred             ecCC-C-CCeEEEEeCCee
Q psy16421         74 ASGS-P-PPSIMWRREGGE   90 (151)
Q Consensus        74 ~~g~-~-~~~~~W~~~~~~   90 (151)
                      +.+. | ...+.|++ ++.
T Consensus       156 ~~~~~P~~~~v~W~~-~g~  173 (232)
T 3qhz_H          156 VKDYFPEPVTVSWNS-GAL  173 (232)
T ss_dssp             EEEEBSSCCEEEEGG-GTB
T ss_pred             EeeEeCCCeEEEEEE-CCE
Confidence            8774 3 33577998 443

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=98.66  E-value=8.1e-08  Score=54.34  Aligned_cols=45  Identities=16%  Similarity=0.279  Sum_probs=38.8

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      ++.|...+....+.+|+++.|.|.+.|.|.|.+.|+|+|..+...
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~   47 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE   47 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTC
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcC
Confidence            567777888888999999999999999999999999997765443

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.66  E-value=2.3e-07  Score=62.08  Aligned_cols=37  Identities=11%  Similarity=0.276  Sum_probs=30.7

Q ss_pred             CeeeeCCceeEeecCCcEEEEeeecccCCC----eeEEEcC
Q psy16421        102 PIVKIPSQLIGAHEGQQLVLECISEAYPKS----VNYWTRE  138 (151)
Q Consensus       102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~----~~~W~k~  138 (151)
                      +.+...+....+.+|+++.|.|.+.+.|.+    .+.|+|+
T Consensus       134 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~  174 (253)
T 3uzq_A          134 LVMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQ  174 (253)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEE
T ss_pred             ceEECcCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEE
Confidence            445555667788999999999999998887    8999984

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.66  E-value=1.8e-07  Score=61.77  Aligned_cols=30  Identities=23%  Similarity=0.614  Sum_probs=21.0

Q ss_pred             EeecCCcEEEEeeeccc-CCC-eeEEEcCCce
Q psy16421        112 GAHEGQQLVLECISEAY-PKS-VNYWTREKGD  141 (151)
Q Consensus       112 ~~~~g~~~~l~C~~~g~-p~~-~~~W~k~~~~  141 (151)
                      .+.+|+.+.|.|.+.|. |.+ .++|+|++..
T Consensus       132 ~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~  163 (227)
T 1mju_H          132 GDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLS  163 (227)
T ss_dssp             ------CEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             cccCCCcEEEEEEeecEeCCCeEEEEecCCCc
Confidence            35679999999999985 777 8999998764

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.65  E-value=6.1e-08  Score=56.79  Aligned_cols=46  Identities=17%  Similarity=0.411  Sum_probs=40.1

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ..+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+..
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~   51 (110)
T 2dm2_A            6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISP   51 (110)
T ss_dssp             SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCT
T ss_pred             CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCC
Confidence            4578888888888999999999999999999999999999776654

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=98.64  E-value=6.6e-08  Score=55.38  Aligned_cols=45  Identities=11%  Similarity=0.216  Sum_probs=39.5

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      .+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+|+|..+..
T Consensus         5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~   49 (99)
T 3puc_A            5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQ   49 (99)
T ss_dssp             EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCS
T ss_pred             CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcC
Confidence            467788888888999999999999999999999999999776644

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.64  E-value=9.1e-08  Score=66.89  Aligned_cols=30  Identities=20%  Similarity=0.470  Sum_probs=25.1

Q ss_pred             EeecCCcEEEEeeeccc-CC-CeeEEEcCCce
Q psy16421        112 GAHEGQQLVLECISEAY-PK-SVNYWTREKGD  141 (151)
Q Consensus       112 ~~~~g~~~~l~C~~~g~-p~-~~~~W~k~~~~  141 (151)
                      .+.+|+.+.|.|.+.|. |. +.++|+|+|..
T Consensus       131 ~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~  162 (344)
T 1za6_B          131 KSTSGGTAALGCLVKDYFPEPVTVSWNSGALT  162 (344)
T ss_dssp             TTTSSSEEEEEEEEEEEBSSCCCEEETTTTBC
T ss_pred             cccCCCcEEEEEEEeeEECCCeEEEEecCCcc
Confidence            35689999999999987 64 68999998764

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.64  E-value=4.2e-07  Score=60.98  Aligned_cols=29  Identities=31%  Similarity=0.671  Sum_probs=26.2

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|.+.+.+.+.+.|++
T Consensus        11 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~r   39 (256)
T 3tf7_C           11 ARVTVSEGASLQLRCKYSYSATPYLFWYV   39 (256)
T ss_dssp             SEEEEETTSCEEECCEEECSSCCEEEEEE
T ss_pred             ceEEecCCCeEEEEEEeCCCCCceEEEEE
Confidence            46788899999999999888999999997

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.64  E-value=5.2e-08  Score=62.86  Aligned_cols=30  Identities=10%  Similarity=0.315  Sum_probs=25.9

Q ss_pred             ecCCcEEEEeeec-ccCCCeeEEEcCCceec
Q psy16421        114 HEGQQLVLECISE-AYPKSVNYWTREKGDMI  143 (151)
Q Consensus       114 ~~g~~~~l~C~~~-g~p~~~~~W~k~~~~~~  143 (151)
                      ..|+.+.|.|.+. |.|.|.++|+|+|..+.
T Consensus       119 ~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~  149 (201)
T 1dr9_A          119 PTSNIRRIICSTSGGFPEPHLSWLENGEELN  149 (201)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEEC
T ss_pred             CCCCeEEEEEecCCccCCCEEEEEECCEECc
Confidence            4588999999995 99999999999977664

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.63  E-value=2.1e-07  Score=60.89  Aligned_cols=28  Identities=21%  Similarity=0.555  Sum_probs=24.9

Q ss_pred             eecCCcEEEEeeeccc-CCC-eeEEEcCCc
Q psy16421        113 AHEGQQLVLECISEAY-PKS-VNYWTREKG  140 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g~-p~~-~~~W~k~~~  140 (151)
                      +.+|+.+.|.|.+.|. |.| .++|++++.
T Consensus       137 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~  166 (220)
T 1pz5_B          137 DTSGSSVTLGCLVKGYFPEPVTVKWNYGAL  166 (220)
T ss_dssp             CSCSSSEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred             cCCCCcEEEEEEEEEEeCCCeEEEEecCCc
Confidence            4679999999999997 888 899999876

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=98.63  E-value=8.8e-08  Score=54.71  Aligned_cols=45  Identities=16%  Similarity=0.146  Sum_probs=38.3

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      .++.|...+....+.+|+++.|.|.+.+ |++.+.|+|||..+..+
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~   48 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAAS   48 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCB
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCC
Confidence            4678888888899999999999999987 55789999998776543

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.63  E-value=5.9e-08  Score=57.45  Aligned_cols=45  Identities=16%  Similarity=0.164  Sum_probs=39.2

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      ++.|...+....+.+|+++.|.|.+.|.|.|.+.|+|+|..+..+
T Consensus        13 p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~   57 (115)
T 2cr6_A           13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHAN   57 (115)
T ss_dssp             CCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCS
T ss_pred             CCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCC
Confidence            346777788889999999999999999999999999998777554

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.62  E-value=2.7e-07  Score=59.94  Aligned_cols=30  Identities=20%  Similarity=0.265  Sum_probs=25.4

Q ss_pred             eecCCcEEEEeeeccc----CCCeeEEEcCCcee
Q psy16421        113 AHEGQQLVLECISEAY----PKSVNYWTREKGDM  142 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g~----p~~~~~W~k~~~~~  142 (151)
                      +.+|+.+.|.|.+.|.    |.|.++|+|++...
T Consensus       135 ~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~  168 (214)
T 2zg1_A          135 LESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSP  168 (214)
T ss_dssp             CCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSS
T ss_pred             ccCCCeEEEEEEeccCCCCCCCceEEEeCCCCcc
Confidence            5689999999999874    88999999987543

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.62  E-value=2.1e-07  Score=62.73  Aligned_cols=28  Identities=29%  Similarity=0.620  Sum_probs=24.2

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|.+. .+.+.+.|++
T Consensus        34 ~~v~v~~G~~v~L~C~~~-~~~~~v~W~r   61 (268)
T 3pl6_D           34 SNKVTEKGKYVELRCDPI-SGHTALYWYR   61 (268)
T ss_dssp             SEEEEETTCCEEEEEBCB-TTCCEEEEEE
T ss_pred             CEEEecCCCCEEEEEEeC-CCCceEEEEE
Confidence            567788999999999986 4778999998

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.62  E-value=3.1e-08  Score=65.62  Aligned_cols=86  Identities=17%  Similarity=0.256  Sum_probs=50.1

Q ss_pred             CccccccCCeEEEEEEEcCC--C-CCCccceEEEEeccccceeEEeecCCCCeeE-eCCCCCceEeecCCeEEEEeeecC
Q psy16421          1 MTEVSREHMGAYLCIASNGV--P-PSVSKRIMLIVQCQYFSKLYIYTSSMPPDIL-DYPTSSDIMVREGSNVSMRCAASG   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~--~-~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~g~~~~l~C~~~g   76 (151)
                      |.+++.+|+|.|.|.+.+..  . ........|.|......    +....+|... ..+  ....+.+|+.+.|.|.+.+
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~----l~~~~~p~~~v~~p--~~~~v~~g~~~~L~C~~~g  156 (230)
T 1ypz_F           83 IYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKR----LDADISPKPTIFLP--SVAETNLHKTGTYLCLLEA  156 (230)
T ss_dssp             ECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTT----CCSCCSCCCCEECC--CHHHHHHHSCEEEEEEEEE
T ss_pred             ECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEeccccc----CcccCCCCceEECC--CchhhccCCcceEEEEEee
Confidence            67899999999999998851  1 11223446666411000    0000122221 112  2334456889999999987


Q ss_pred             C-CC-CeEEEEeCCeeeE
Q psy16421         77 S-PP-PSIMWRREGGEMI   92 (151)
Q Consensus        77 ~-~~-~~~~W~~~~~~~~   92 (151)
                      . |. +.+.|++.+++.+
T Consensus       157 ~~P~~~~v~W~~~~g~~l  174 (230)
T 1ypz_F          157 FFPDVIRVYWKEKDGNTI  174 (230)
T ss_dssp             ESSCCCEEEEECTTSSCB
T ss_pred             ecCCCeEEEEEccCCeEc
Confidence            4 64 6999999555544

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.61  E-value=7.4e-08  Score=68.43  Aligned_cols=80  Identities=13%  Similarity=0.241  Sum_probs=52.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC-C-
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS-P-   78 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-~-   78 (151)
                      |..++.+|+|.|+|.+.+..+. ......+.+.         ..+..+|.+...+  ......+|+.+.|.|.+.|. | 
T Consensus       237 I~~~~~~D~g~Y~C~~~~~~~~-~~~~~~v~~~---------~~~~~~P~v~v~~--~~~~~~~g~~~~L~C~~~g~~P~  304 (376)
T 2aty_A          237 IMHQDWLNGKEFKCRVNSAAFP-APIEKTISKT---------KGRPKAPQLYTIP--PPKEQMAKDKVSLTCMITDFFPE  304 (376)
T ss_pred             echHhccCCCEEEEEEecCCCC-CceEEEEcCC---------CCCCcCCeEEeeC--CCHHHhcCCceEEEEEEEEeECC
Confidence            3466778999999999988652 2111122111         1334677776655  23334468899999999885 3 


Q ss_pred             CCeEEEEeCCeeeEe
Q psy16421         79 PPSIMWRREGGEMIT   93 (151)
Q Consensus        79 ~~~~~W~~~~~~~~~   93 (151)
                      .+.+.|++ +++.+.
T Consensus       305 ~i~v~W~k-~g~~~~  318 (376)
T 2aty_A          305 DITVEWQW-NGQPAE  318 (376)
T ss_pred             CcEEEEEE-CCEECC
Confidence            45899999 666553

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=98.60  E-value=3.1e-08  Score=66.02  Aligned_cols=78  Identities=17%  Similarity=0.407  Sum_probs=47.0

Q ss_pred             CccccccCCeEEEEEEEcCCCC------------CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP------------SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNV   68 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~------------~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~   68 (151)
                      |.+++.+|+|.|.|.+.+..+.            .......|.|..         ....+|.+...+  ....+..|+.+
T Consensus        90 I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~---------~~~~~P~v~~~~--~~~~~~~g~~v  158 (239)
T 3tv3_H           90 LNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSS---------ASTKGPSVFPLA--PSSKSTSGGTA  158 (239)
T ss_dssp             ECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECC---------CCCBCCEEEEEC--CCCCC--TTEE
T ss_pred             ECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeecc---------CCCcCCEEEEEC--CChhhccCCcE
Confidence            5789999999999999875320            112233444431         112345554322  12334569999


Q ss_pred             EEEeeecC-CCCC-eEEEEeCCee
Q psy16421         69 SMRCAASG-SPPP-SIMWRREGGE   90 (151)
Q Consensus        69 ~l~C~~~g-~~~~-~~~W~~~~~~   90 (151)
                      .|.|.+.+ .|.+ .+.|++ +++
T Consensus       159 ~l~C~~~~~~p~~~~v~W~~-~g~  181 (239)
T 3tv3_H          159 ALGCLVKDYFPEPVTVSWNS-GAL  181 (239)
T ss_dssp             EEEEEEEEEBSSCCEEEEGG-GTB
T ss_pred             EEEEEEeeEeCCCeEEEEEE-CCc
Confidence            99999877 4544 478998 443

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.60  E-value=5.8e-08  Score=55.29  Aligned_cols=47  Identities=13%  Similarity=0.299  Sum_probs=35.6

Q ss_pred             CCCCeeeeCCce--eEeecCCcEEEEeeecccCCCeeEEEcCCceeccCC
Q psy16421         99 TVPPIVKIPSQL--IGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG  146 (151)
Q Consensus        99 ~~~p~~~~~~~~--~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~~  146 (151)
                      ..|+.|..+...  +.+.+|+++.|.|.+.+ |.|.+.|+|||..+..+.
T Consensus         2 ~~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~   50 (91)
T 2lvc_A            2 HMPVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESD   50 (91)
T ss_dssp             CCCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCS
T ss_pred             CCCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeee
Confidence            356667666544  34578999999999966 888999999988776543

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.59  E-value=7.4e-08  Score=57.19  Aligned_cols=47  Identities=23%  Similarity=0.379  Sum_probs=41.3

Q ss_pred             CCCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         98 NTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        98 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ...+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+|++..+..
T Consensus        12 ~~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~   58 (116)
T 2kkq_A           12 HKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQF   58 (116)
T ss_dssp             CCBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCC
T ss_pred             CCCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcC
Confidence            35678888888889999999999999999999999999999776653

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.59  E-value=7.5e-08  Score=57.14  Aligned_cols=46  Identities=15%  Similarity=0.341  Sum_probs=40.2

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ..+|.|...+....+.+|+++.|.|.+.|.|.+.+.|+|+|..+..
T Consensus         6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~   51 (118)
T 2eo9_A            6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVST   51 (118)
T ss_dssp             CCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCT
T ss_pred             CCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcC
Confidence            4578888888888999999999999999999999999999776643

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.59  E-value=8.8e-07  Score=59.32  Aligned_cols=34  Identities=12%  Similarity=0.262  Sum_probs=28.4

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCC-CeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPK-SVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~~~W~k  137 (151)
                      +...+....+.+|+++.|.|.+.+.|. +.+.|+|
T Consensus       152 ~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k  186 (256)
T 3juy_B          152 LTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQ  186 (256)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEE
T ss_pred             EEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEE
Confidence            344456677899999999999999886 8899998

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=5.5e-08  Score=56.90  Aligned_cols=47  Identities=13%  Similarity=0.238  Sum_probs=41.3

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      ..+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+|++..+...
T Consensus         7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~   53 (110)
T 2dm3_A            7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPD   53 (110)
T ss_dssp             CCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCC
T ss_pred             CCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCC
Confidence            45788988888899999999999999999999999999998766543

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=98.58  E-value=1.4e-07  Score=54.61  Aligned_cols=74  Identities=26%  Similarity=0.465  Sum_probs=49.9

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC-------CCCeeeeCCceeEeecCCcE
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT-------VPPIVKIPSQLIGAHEGQQL  119 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~-------~~p~~~~~~~~~~~~~g~~~  119 (151)
                      .||.|...+  .++.+.+|+.+.|.|.+.|.|.|.+.|++ +++.+.......       ..-.+.+.    .+...+..
T Consensus         4 ~PP~i~~~p--~~~~v~~G~~~~l~C~~~g~P~p~v~W~k-~g~~i~~~~~~~~~~~~~~~~~~L~I~----~~~~~D~G   76 (100)
T 3knb_A            4 IPPKIEALP--SDISIDEGKVLTVACAFTGEPTPEVTWSC-GGRKIHSQEQGRFHIENTDDLTTLIIM----DVQKQDGG   76 (100)
T ss_dssp             EEEEECCCC--SEEEEETTSEEEEEEEEEEESCCEEEEEE-TTEECCTTGGGTEEEEECSSEEEEEES----SCCGGGCE
T ss_pred             CCCEEEeCC--CcEEEeCCCeEEEEEEEEEecCCEEEEEE-CceEeeeeccceeeeecccceEEEEEc----CCCccCCE
Confidence            356666655  67889999999999999999999999999 666665322100       00011111    13456778


Q ss_pred             EEEeeecc
Q psy16421        120 VLECISEA  127 (151)
Q Consensus       120 ~l~C~~~g  127 (151)
                      ...|.+..
T Consensus        77 ~Y~C~a~N   84 (100)
T 3knb_A           77 LYTLSLGN   84 (100)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            89998863

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.58  E-value=1.3e-07  Score=62.39  Aligned_cols=30  Identities=20%  Similarity=0.461  Sum_probs=24.2

Q ss_pred             CceEeecCCeEEEEeeecCCC-CC-eEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASGSP-PP-SIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~-~~-~~~W~~~   87 (151)
                      ..+.+.+|+++.|.|.+.+.+ .+ .+.|++.
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~   58 (234)
T 2j6e_L           27 PSASGTPGQRVTISCSGSSSNIGSNYVYWYQQ   58 (234)
T ss_dssp             SCCCBCTTCEEEEEEECCTTTTTTSCCEEEEE
T ss_pred             CcEEeeCCCcEEEEEEecCCCCCCCeEEEEEe
Confidence            456788999999999998754 34 6999984

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.57  E-value=4.3e-07  Score=58.50  Aligned_cols=30  Identities=13%  Similarity=0.070  Sum_probs=24.4

Q ss_pred             CceEeecCCeEEEEeeecC-CCCCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASG-SPPPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g-~~~~~~~W~~~   87 (151)
                      ..+.+.+|+++.|.|.+.+ .+.+.+.|++.
T Consensus         6 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~   36 (193)
T 2if7_A            6 LMVNGILGESVTLPLEFPAGEKVNFITWLFN   36 (193)
T ss_dssp             EEEEEETTSCEEECCCCCCCSCCCEEEEEET
T ss_pred             eEEEEEecCeEEEeccCCCcccccEEEEEEC
Confidence            4567789999999999865 45578999994

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.57  E-value=7.8e-07  Score=59.16  Aligned_cols=30  Identities=20%  Similarity=0.339  Sum_probs=25.8

Q ss_pred             CceEeecCCeEEEEeeecCCC-----CCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASGSP-----PPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~-----~~~~~W~~~   87 (151)
                      ..+.+.+|+++.|.|.+.+.+     .+.+.|++.
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~   43 (247)
T 1svz_A            9 LYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQ   43 (247)
T ss_dssp             SEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             CeEEecCCCCEEEEEeCCCcccccCCCceEEEEEE
Confidence            457788999999999998877     689999983

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.57  E-value=9.3e-07  Score=59.21  Aligned_cols=38  Identities=13%  Similarity=0.221  Sum_probs=31.5

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcC
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTRE  138 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~  138 (151)
                      ++.+...+....+.+|+++.|.|.+.+.|.+.+.|+|+
T Consensus       138 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~  175 (256)
T 3umt_A          138 DIQLTQSPSSLSASLGERVSITCRASQDIGSNLNWLQQ  175 (256)
T ss_dssp             CCCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             ccEEEcCCCeEEEECCCCEEEEEEEecCCCcEEEEEEE
Confidence            44455556667889999999999999999899999984

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.57  E-value=3.5e-07  Score=59.90  Aligned_cols=29  Identities=21%  Similarity=0.528  Sum_probs=24.9

Q ss_pred             eecCCcEEEEeeeccc-CCC-eeEEEcCCce
Q psy16421        113 AHEGQQLVLECISEAY-PKS-VNYWTREKGD  141 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g~-p~~-~~~W~k~~~~  141 (151)
                      +.+|+.+.|.|.+.|. |.| .++|+++|..
T Consensus       139 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~  169 (222)
T 1q9r_B          139 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  169 (222)
T ss_dssp             CCCSSEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             ccCCCcEEEEEEEccEECCCCEEEEecCCeE
Confidence            4579999999999985 888 8999998754

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=98.57  E-value=6.8e-08  Score=64.83  Aligned_cols=76  Identities=18%  Similarity=0.417  Sum_probs=44.4

Q ss_pred             CccccccCCeEEEEEEEcCC---------------------CCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCc
Q psy16421          1 MTEVSREHMGAYLCIASNGV---------------------PPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD   59 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~---------------------~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~   59 (151)
                      |.+++.+|+|.|.|.+.+..                     .........|.|..         ....+|.+...+  ..
T Consensus        82 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~---------~~~~~P~v~~~~--~~  150 (248)
T 3u2s_H           82 MNSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSS---------ASTKGPSVFPLA--PS  150 (248)
T ss_dssp             ECSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECS---------CCCBCCEEEEEC--CC
T ss_pred             ECCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcc---------cCCCCCEEEEeC--CC
Confidence            57899999999999998741                     00122334555531         112345554322  12


Q ss_pred             eEeecCCeEEEEeeecC-CC-CCeEEEEeC
Q psy16421         60 IMVREGSNVSMRCAASG-SP-PPSIMWRRE   87 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g-~~-~~~~~W~~~   87 (151)
                      ..+..|+.+.|.|.+.+ .| ...+.|+++
T Consensus       151 ~~~~~g~~~~L~C~~~~~~P~~~~v~W~~~  180 (248)
T 3u2s_H          151 SKSTSGGTAALGCLVKDYFPEPVTVSWNSG  180 (248)
T ss_dssp             ------CEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             ccccCCCcEEEEEEEeeEECCCeEEEEeEC
Confidence            33456899999999877 45 457899984

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.57  E-value=4.8e-08  Score=56.42  Aligned_cols=46  Identities=9%  Similarity=0.174  Sum_probs=39.5

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccCC
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG  146 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~~  146 (151)
                      .||.|...+....+.+|+++.|.|.+.+.| +.+.|+|||..+..+.
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~   52 (101)
T 2edk_A            7 GPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTRED   52 (101)
T ss_dssp             CCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSC
T ss_pred             CCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCC
Confidence            467788888888999999999999999998 9999999987776544

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=98.56  E-value=2.7e-07  Score=59.84  Aligned_cols=109  Identities=17%  Similarity=0.291  Sum_probs=62.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~~   79 (151)
                      |.+++ +|.+.|.|.+.... ......+.|.|..            .|-.+...+  ....+.+|+.+.|.|.+.+ .|.
T Consensus        56 ls~vs-~d~~~~~C~~~c~~-~~~~~~v~l~Vy~------------~P~~v~i~~--~~~~~~~G~~~tL~C~v~~~~P~  119 (196)
T 3bn3_B           56 LVDIR-EPETQPVCFFRCAR-RTLQARGLIRTFQ------------RPDRVELMP--LPPWQPVGENFTLSCRVPGAGPR  119 (196)
T ss_dssp             EEEEC-SSEECCEEEEEETT-EEEEEECEEEEEB------------CCCCCEECC--CCSSEETTSEEEEEEEETTCBCG
T ss_pred             EEEEc-cCCCceEEEEECCC-CceEEEEEEEEec------------CCCcCEEcc--CCccccCCCcEEEEEEeCCccCC
Confidence            35677 78888999976643 3566677777751            122222222  1223678999999999877 444


Q ss_pred             Ce--EEEEeCCeeeEecccCCCCCCe---eeeCCceeEeecCCcEEEEeeec
Q psy16421         80 PS--IMWRREGGEMITNSFNNTVPPI---VKIPSQLIGAHEGQQLVLECISE  126 (151)
Q Consensus        80 ~~--~~W~~~~~~~~~~~~~~~~~p~---~~~~~~~~~~~~g~~~~l~C~~~  126 (151)
                      ..  +.|++ |++.+...........   ...........+.+-..++|.|.
T Consensus       120 ~~L~i~wlk-g~~~l~~~~~~~~~~~~~~~t~~~~~~~~r~D~g~~~sC~A~  170 (196)
T 3bn3_B          120 ASLTLTLLR-GAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAE  170 (196)
T ss_dssp             GGEEEEEEE-TTEEEEEEECTTSCTTCCCEEEEEEEECCGGGTTCEEEEEEE
T ss_pred             CCcEEEEEe-CCEEeeccccccccccccceeEEEEEeeeeccCCCeEEEEEE
Confidence            33  79999 6666643221111100   11111111123566679999986

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=98.56  E-value=8.5e-08  Score=56.21  Aligned_cols=74  Identities=26%  Similarity=0.591  Sum_probs=52.1

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCC-----CeeeeCCceeEeecCCcEEE
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVP-----PIVKIPSQLIGAHEGQQLVL  121 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~-----p~~~~~~~~~~~~~g~~~~l  121 (151)
                      .||.|...+  .++.+.+|+.+.|.|.+.|.|.|.+.|++ +++.+....+....     -.+.+.    .+...+....
T Consensus        12 ~pP~f~~~p--~~~~v~~G~~~~l~C~~~G~P~p~v~W~k-~g~~l~~~~~~~~~~~~~~~~L~I~----~v~~~D~G~Y   84 (107)
T 3knb_B           12 SPPCFLRFP--RPVRVVSGAEAELKCVVLGEPPPVVVWEK-GGQQLAASERLSFPADGAEHGLLLT----AALPTDAGVY   84 (107)
T ss_dssp             EEEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCCSSEECCEETTEEEEEES----SCCGGGCEEE
T ss_pred             CCCEEEeCC--CcEEEeCCCcEEEEEEEEEecCCEEEEEE-CcccccceeeEEEeecCceEEEEEe----cCChhhCEEE
Confidence            578888877  67899999999999999999999999999 66666543321100     012221    2345677888


Q ss_pred             Eeeecc
Q psy16421        122 ECISEA  127 (151)
Q Consensus       122 ~C~~~g  127 (151)
                      .|.+..
T Consensus        85 ~C~a~N   90 (107)
T 3knb_B           85 VCRARN   90 (107)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            998763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.56  E-value=4.5e-08  Score=69.17  Aligned_cols=56  Identities=21%  Similarity=0.224  Sum_probs=27.0

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP   80 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~   80 (151)
                      |.+++.+|+|.|+|.|.|..| ..+..+.|.|.             ..+             .+|+.+.|.|.+.|.|.|
T Consensus       305 I~~v~~~D~G~Y~C~a~N~~g-~~~~~~~l~V~-------------~~~-------------~~g~~~~l~C~~~g~P~P  357 (361)
T 2xot_A          305 FKKVQVEDGGVYTCYAMGETF-NETLSVELKVY-------------NFT-------------LHGHHDTLNAAADPWSHP  357 (361)
T ss_dssp             ESSCCTTSCEEEEEEEECSSC-EEEEEEEEEEE-------------SSC-------------CC----------------
T ss_pred             EeecCcccCEEEEEEEecCCC-ccEEEEEEEEE-------------eee-------------ccCCceEEEEEeCCCCCC
Confidence            578999999999999999977 55566666653             111             357789999999999988


Q ss_pred             eEE
Q psy16421         81 SIM   83 (151)
Q Consensus        81 ~~~   83 (151)
                      .+.
T Consensus       358 ~i~  360 (361)
T 2xot_A          358 QFE  360 (361)
T ss_dssp             ---
T ss_pred             ccc
Confidence            763

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.55  E-value=4.1e-07  Score=59.00  Aligned_cols=33  Identities=21%  Similarity=0.503  Sum_probs=25.4

Q ss_pred             ceEeecCCeEEEEeeecCCCCCe---EEEEeCCeee
Q psy16421         59 DIMVREGSNVSMRCAASGSPPPS---IMWRREGGEM   91 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~~~~---~~W~~~~~~~   91 (151)
                      .+.+..|+++.|.|.+.+.+.+.   +.|+|.++..
T Consensus        10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~   45 (225)
T 4fmk_A           10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTV   45 (225)
T ss_dssp             EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCE
T ss_pred             EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcc
Confidence            35667899999999998877663   7899965443

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.55  E-value=1.1e-07  Score=63.88  Aligned_cols=32  Identities=13%  Similarity=0.211  Sum_probs=27.4

Q ss_pred             CceeEeecCCcEEEEeee---cccCCCeeEEEcCC
Q psy16421        108 SQLIGAHEGQQLVLECIS---EAYPKSVNYWTREK  139 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~---~g~p~~~~~W~k~~  139 (151)
                      +....+.+|+++.|.|.+   .+.|.+.+.|+|++
T Consensus       125 p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~  159 (268)
T 3mj6_A          125 PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSS  159 (268)
T ss_dssp             CSEEEEETTCCEEECCBCEESSSSCCCEEEEEEEC
T ss_pred             CCccccccCCcEEEEEEecCCCCCCccceEEEecC
Confidence            456778999999999999   67799999999953

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=98.55  E-value=1.5e-07  Score=58.61  Aligned_cols=47  Identities=19%  Similarity=0.373  Sum_probs=41.2

Q ss_pred             CCCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         98 NTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        98 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      +..+|.|...+....+..|+++.|.|.+.|.|.|.+.|+|++..+..
T Consensus        38 v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~   84 (154)
T 1fhg_A           38 PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKE   84 (154)
T ss_dssp             CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC
T ss_pred             CCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCC
Confidence            45678888888888999999999999999999999999999876644

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.54  E-value=3.1e-07  Score=60.08  Aligned_cols=29  Identities=17%  Similarity=0.486  Sum_probs=24.9

Q ss_pred             eecCCcEEEEeeeccc-CCC-eeEEEcCCce
Q psy16421        113 AHEGQQLVLECISEAY-PKS-VNYWTREKGD  141 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g~-p~~-~~~W~k~~~~  141 (151)
                      +.+|+.+.|.|.+.|. |.| .++|+++|..
T Consensus       134 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~  164 (215)
T 1c5d_H          134 DTTSSTVTLGCLVKGYFPEPVTVTWNSGALS  164 (215)
T ss_dssp             CCCCSSEEEEEEEEEEBSSCCEEEEGGGTTC
T ss_pred             hccCCcEEEEEEEeeeEcCCcEEEEccCCcc
Confidence            3579999999999986 888 8999998764

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=98.54  E-value=8.1e-08  Score=55.92  Aligned_cols=46  Identities=13%  Similarity=0.353  Sum_probs=34.3

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ..+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+|++..+..
T Consensus         8 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~   53 (108)
T 3kvq_A            8 RVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE   53 (108)
T ss_dssp             ---CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCC
T ss_pred             cCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEccc
Confidence            4577888778888899999999999999999999999999876643

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=98.53  E-value=6.3e-08  Score=56.56  Aligned_cols=46  Identities=15%  Similarity=0.290  Sum_probs=40.7

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ..+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+|+|..+..
T Consensus        12 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~   57 (106)
T 1nct_A           12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLST   57 (106)
T ss_dssp             SCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTT
T ss_pred             CCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCC
Confidence            4578888888899999999999999999999999999999776543

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.53  E-value=1.1e-06  Score=58.84  Aligned_cols=37  Identities=19%  Similarity=0.478  Sum_probs=30.1

Q ss_pred             CeeeeCCceeEeecCCcEEEEeeecccCCC-eeEEEcC
Q psy16421        102 PIVKIPSQLIGAHEGQQLVLECISEAYPKS-VNYWTRE  138 (151)
Q Consensus       102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~k~  138 (151)
                      +.+...+....+.+|+++.|.|.+.+.|.+ .+.|+|+
T Consensus       142 ~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~  179 (257)
T 3gkz_A          142 IVLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYWYQQ  179 (257)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESSCCCGGGEEEEEE
T ss_pred             eEEEcCCceEEEeCCCcEEEEEEEccCccceEEEEEEE
Confidence            344445566788999999999999998887 8999983

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=98.52  E-value=2e-07  Score=61.60  Aligned_cols=73  Identities=16%  Similarity=0.411  Sum_probs=45.9

Q ss_pred             CccccccCCeEEEEEEEcCCC-----C--CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEee
Q psy16421          1 MTEVSREHMGAYLCIASNGVP-----P--SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCA   73 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~-----~--~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~   73 (151)
                      |.+++.+|+|.|.|.+.+..+     .  .......|.|..         ....+|.+....  ....+.+|+.+.|.|.
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~---------~~~~~P~v~~~~--~~~~~~~g~~v~L~C~  151 (230)
T 3n9g_H           83 LSSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSS---------ASTKGPSVFPLA--PSSKSTSGGTAALGCL  151 (230)
T ss_dssp             ECSCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECS---------SCCBCCEEEEEC--CCCCCCTTCEEEEEEE
T ss_pred             ECCCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEe---------cCCCCCEEEecC--CCccccCCCCEEEEEE
Confidence            578999999999999987541     0  122334555531         112345554322  1223457999999999


Q ss_pred             ecC-CC-CCeEEE
Q psy16421         74 ASG-SP-PPSIMW   84 (151)
Q Consensus        74 ~~g-~~-~~~~~W   84 (151)
                      +.+ .| .+.+.|
T Consensus       152 ~~~~~P~~~~v~W  164 (230)
T 3n9g_H          152 VKDYFPEPVTVSW  164 (230)
T ss_dssp             EEEEBSSCCEEEE
T ss_pred             EEeEECCCEEEEE
Confidence            877 44 456899

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.51  E-value=1e-07  Score=55.24  Aligned_cols=45  Identities=18%  Similarity=0.241  Sum_probs=37.1

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccCC
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG  146 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~~  146 (151)
                      |+.|...+....+.+|+++.|.|.+.+ |.+.+.|+|+|..+..+.
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~   51 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGP   51 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCST
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCC
Confidence            344777777889999999999999988 779999999987765544

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.49  E-value=5.1e-07  Score=60.61  Aligned_cols=29  Identities=21%  Similarity=0.434  Sum_probs=25.7

Q ss_pred             ceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        109 QLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      ....+.+|+++.|.|.+.+.|.+.+.|+|
T Consensus       147 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~k  175 (257)
T 1f3r_B          147 SLLSASVGDRVTLSCKGSQNINNYLAWYQ  175 (257)
T ss_dssp             SEECCCTTCCEEEEEECSSCCBTCEEEEE
T ss_pred             CEEEEcCCCCEEEEEEECCcCCCcEEEEE
Confidence            34567899999999999999989999999

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.49  E-value=9.8e-07  Score=59.62  Aligned_cols=30  Identities=30%  Similarity=0.597  Sum_probs=25.0

Q ss_pred             CceEeecCCeEEEEeeecCCC--CCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASGSP--PPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~--~~~~~W~~~   87 (151)
                      ..+.+.+|+++.|.|.+.+.+  .+.+.|++.
T Consensus        14 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~   45 (261)
T 2xqy_G           14 GAELVKPGASVKMSCKASGYSFTSYWMNWVKQ   45 (261)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CCEEEcCCCCEEEEEEeCCcccCCceEEEEEe
Confidence            356778899999999998866  688999984

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=2.8e-07  Score=54.50  Aligned_cols=44  Identities=9%  Similarity=0.081  Sum_probs=38.3

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccCC
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG  146 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~~  146 (151)
                      ++.|...+....+.+|+++.|.|.+.+  .|.+.|+|||..+..+.
T Consensus         8 ~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~   51 (112)
T 2e6q_A            8 TARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNE   51 (112)
T ss_dssp             CCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSC
T ss_pred             CcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCc
Confidence            467888888999999999999999998  77899999988886654

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=98.49  E-value=1.9e-07  Score=66.68  Aligned_cols=71  Identities=21%  Similarity=0.343  Sum_probs=49.0

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceE-eecCC-eEEEEeeecC-C
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM-VREGS-NVSMRCAASG-S   77 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~g~-~~~l~C~~~g-~   77 (151)
                      |.+++.+|+|.|.|.+.+..+ .....+.|.|.             .+|.+...+  .... +..|+ .+.|.|.+.+ .
T Consensus       258 I~~v~~~D~G~Y~C~v~~~~~-~~~~~v~L~V~-------------~pP~V~v~p--~~~~~~~~G~~~vtL~C~a~Gfy  321 (401)
T 3f8u_B          258 LPRVQPFQEGTYLATIHLPYL-QGQVTLELAVY-------------KPPKVSLMP--ATLARAAPGEAPPELLCLVSHFY  321 (401)
T ss_dssp             ETTCCGGGCEEEEEEEEETTE-EEEEEEEEEEE-------------BCCEEEEES--SSCCCCCTTCCCCCEEEEEEEEB
T ss_pred             ECcCCHhhCceEEEEEEeccc-ceeEEEEEeec-------------cCCeEeecc--CcceeecCCCccEEEEEEecCCc
Confidence            578999999999999998765 33334444443             567766544  2222 34576 7999999988 4


Q ss_pred             CC--CeEEEE-eC
Q psy16421         78 PP--PSIMWR-RE   87 (151)
Q Consensus        78 ~~--~~~~W~-~~   87 (151)
                      |.  +.+.|+ ++
T Consensus       322 P~~~~~VtW~~rd  334 (401)
T 3f8u_B          322 PSGGLEVEWELRG  334 (401)
T ss_dssp             SSTTCEEEEEEES
T ss_pred             CCCCcEEEEEecC
Confidence            55  789995 73

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.49  E-value=1.1e-07  Score=55.33  Aligned_cols=46  Identities=11%  Similarity=0.115  Sum_probs=39.6

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      ..+|.|...+....+.+|+++.|.|.+.+.|.+ +.|+|+|..+..+
T Consensus         6 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~   51 (106)
T 2dlt_A            6 SGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPS   51 (106)
T ss_dssp             CCCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCC
T ss_pred             CCCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCC
Confidence            357888888888999999999999999998887 9999998766543

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=98.48  E-value=1.7e-07  Score=57.08  Aligned_cols=45  Identities=13%  Similarity=0.031  Sum_probs=38.5

Q ss_pred             CCCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421         98 NTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus        98 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      ...+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+|++..+
T Consensus        18 ~~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~   62 (137)
T 3qr2_A           18 GSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGP   62 (137)
T ss_dssp             ---CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESST
T ss_pred             CCCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCc
Confidence            457899999999999999999999999999999999999976543

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=98.48  E-value=1.4e-07  Score=53.82  Aligned_cols=44  Identities=20%  Similarity=0.286  Sum_probs=37.0

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      .+|.|...+....+.+|+++.|.|.+.|.| |.+.|+|+|..+..
T Consensus         8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~   51 (95)
T 2ckn_A            8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVE   51 (95)
T ss_dssp             CSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCC
T ss_pred             CCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCC
Confidence            456777777788899999999999999998 79999998776654

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.48  E-value=1.5e-07  Score=52.77  Aligned_cols=36  Identities=14%  Similarity=0.258  Sum_probs=30.7

Q ss_pred             ceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        109 QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      ..+.+.+|+++.|.|.+.+ |.|.+.|+|||..+..+
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~   39 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQ   39 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCC
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEcccc
Confidence            4567899999999999976 88999999998777554

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=98.48  E-value=2.1e-07  Score=53.76  Aligned_cols=44  Identities=14%  Similarity=0.207  Sum_probs=38.2

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      ..+|.|...+....+.+|+++.|.|.+.+.|.+ +.|+|++..+.
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~   49 (103)
T 2e7b_A            6 SGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLR   49 (103)
T ss_dssp             CCCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCC
T ss_pred             CCCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECC
Confidence            457778777888899999999999999999999 99999877654

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.47  E-value=1.3e-06  Score=56.35  Aligned_cols=108  Identities=14%  Similarity=0.177  Sum_probs=62.6

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~~   79 (151)
                      |.+|+  |+|.|.|.+..... .....+.|+|.          .....+.+...    ...+.+|+.++|.|.+.+ .|.
T Consensus        56 l~~vs--~~g~~~C~~~c~~~-~~~~~~~itVy----------~~P~~v~i~~~----p~~~~~G~~~tL~C~v~~v~P~  118 (192)
T 1zxq_A           56 VSNIS--HDTVLQCHFTCSGK-QESMNSNVSVY----------QPPRQVILTLQ----PTLVAVGKSFTIECRVPTVEPL  118 (192)
T ss_dssp             EEEEC--SCEEEEEEEEETTE-EEEEEEEEEEC----------BCCCCCEEEEE----SSEECTTSEEEEEEEECSCBCG
T ss_pred             Eeccc--cCCeeEEEEECCCc-ceEEEEEEEEE----------eCCCCceEccC----CccccCCCcEEEEEEeCCeECC
Confidence            34666  78999999987543 45566677664          22223333321    225678999999999865 664


Q ss_pred             C--eEEEEeCCeeeEecccC---CCCCCeeeeCCceeEeecCCcEEEEeeec
Q psy16421         80 P--SIMWRREGGEMITNSFN---NTVPPIVKIPSQLIGAHEGQQLVLECISE  126 (151)
Q Consensus        80 ~--~~~W~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~~~g~~~~l~C~~~  126 (151)
                      .  ++.|++ |.+.+.....   ...+...........-.+.+-..++|.|.
T Consensus       119 ~~L~v~llr-G~~~l~~~~f~~~~~~~~~~tv~~~~~~~r~D~g~~~sC~A~  169 (192)
T 1zxq_A          119 DSLTLFLFR-GNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAV  169 (192)
T ss_dssp             GGEEEEEEE-TTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEE
T ss_pred             CCcEEEEEc-CCEEeeecccccccCcCcceEEEEEEecchhhCCceEEEEEE
Confidence            4  479999 6666653211   11111222211111123466679999975

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.47  E-value=1.6e-07  Score=54.25  Aligned_cols=44  Identities=14%  Similarity=0.176  Sum_probs=38.0

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      .+|.|...+....+.+|+++.|.|.+  .|.|.+.|+|||..+..+
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~   49 (100)
T 2yuz_A            6 SGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQES   49 (100)
T ss_dssp             CCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCC
T ss_pred             CCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCC
Confidence            46778888888899999999999999  789999999998776543

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.47  E-value=1.7e-06  Score=57.77  Aligned_cols=29  Identities=21%  Similarity=0.499  Sum_probs=24.8

Q ss_pred             ceEeecCCeEEEEeeecCC--CCCeEEEEeC
Q psy16421         59 DIMVREGSNVSMRCAASGS--PPPSIMWRRE   87 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~--~~~~~~W~~~   87 (151)
                      .+.+.+|+++.|.|.+.+.  +.+.+.|++.
T Consensus        11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~   41 (256)
T 3ux9_B           11 SVSGAPGQRVTISCSGSSSNIGSNYVSWYQQ   41 (256)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCCEEEEE
T ss_pred             cEEEcCCCcEEEEEecCCCCCCCceEEEEEE
Confidence            4677889999999999886  7889999983

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.46  E-value=1.1e-06  Score=57.71  Aligned_cols=30  Identities=20%  Similarity=0.557  Sum_probs=24.9

Q ss_pred             eecCCcEEEEeeeccc-CC--CeeEEEcCCcee
Q psy16421        113 AHEGQQLVLECISEAY-PK--SVNYWTREKGDM  142 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g~-p~--~~~~W~k~~~~~  142 (151)
                      +..|+.+.|.|.+.|. |.  +.++|++++..+
T Consensus       134 ~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~  166 (220)
T 2fbj_H          134 ALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDI  166 (220)
T ss_dssp             SSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSC
T ss_pred             ccCCCcEEEEEEEEeEECCCcEEEEEecCCEec
Confidence            4579999999999986 76  689999987653

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.46  E-value=7.4e-07  Score=66.37  Aligned_cols=30  Identities=23%  Similarity=0.692  Sum_probs=26.0

Q ss_pred             CceEeecCCeEEEEeee-cCCCCCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAA-SGSPPPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~-~g~~~~~~~W~~~   87 (151)
                      ....+.+|++++|.|.+ .+.|.+.+.|++.
T Consensus       374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~  404 (581)
T 3o3u_N          374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLN  404 (581)
T ss_dssp             EEEEEETTSCEEECCTTCCSSSSCEEEEEEE
T ss_pred             cccceecCCcEEEeeeecCCCCCceEEEEEc
Confidence            34677899999999998 7889999999994

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=98.46  E-value=8.4e-07  Score=56.17  Aligned_cols=30  Identities=17%  Similarity=0.389  Sum_probs=24.5

Q ss_pred             ceEeecCCeEEEEeeecCCCCCeEEEEeCCe
Q psy16421         59 DIMVREGSNVSMRCAASGSPPPSIMWRREGG   89 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~   89 (151)
                      .+.+.+|+++.|.|.+.+ +.+.+.|++.+.
T Consensus         4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~   33 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKD   33 (171)
T ss_dssp             EEEEETTCCEEECCCCSS-CCSCEEEEETTE
T ss_pred             EEEEEcCCCEEEcCCCCC-CcceEEEEeCCc
Confidence            456778999999999855 888999999543

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=98.46  E-value=3.8e-07  Score=61.26  Aligned_cols=73  Identities=18%  Similarity=0.426  Sum_probs=43.7

Q ss_pred             CccccccCCeEEEEEEEcCCC---------C-CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVP---------P-SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSM   70 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~---------~-~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l   70 (151)
                      |.+++.+|+|.|.|.+.+..+         . .......|.|..         ....+|.+....  ....+.+|+.+.|
T Consensus       106 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~---------~~~~~P~i~~~~--~~~~~~~g~~v~L  174 (256)
T 3sob_H          106 MNSLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSS---------ASTKGPSVFPLA--PSSKSTSGGTAAL  174 (256)
T ss_dssp             ECSCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECS---------SCCBCCEEEEEC--CC-----TTEEEE
T ss_pred             ECCCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEec---------CCCCCCEEEEEC--CCcccccCCcEEE
Confidence            678999999999999987531         0 122334555531         122445554322  1234567999999


Q ss_pred             EeeecC-CC-CCeEEE
Q psy16421         71 RCAASG-SP-PPSIMW   84 (151)
Q Consensus        71 ~C~~~g-~~-~~~~~W   84 (151)
                      .|.+.+ .| .+.+.|
T Consensus       175 ~C~~~~~~p~~~~v~W  190 (256)
T 3sob_H          175 GCLVKDYFPEPVTVSW  190 (256)
T ss_dssp             EEEEEEEBSSCCEEEE
T ss_pred             EEEEEEEECCCeEEEE
Confidence            999876 44 457899

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.45  E-value=2.3e-06  Score=58.24  Aligned_cols=29  Identities=17%  Similarity=0.466  Sum_probs=25.8

Q ss_pred             CceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +....+.+|+++.|.|.+.+.| +.+.|+|
T Consensus       169 p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k  197 (282)
T 1qok_A          169 PAIMSASPGEKVTITCSASSSV-SYMHWFQ  197 (282)
T ss_dssp             CSEEEECTTCCEEEEEEESSCC-SCCEEEE
T ss_pred             CCEEEEcCCCcEEEEEEecCCC-ceEEEEE
Confidence            4456688999999999999999 8999999

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.45  E-value=2e-06  Score=58.08  Aligned_cols=30  Identities=27%  Similarity=0.533  Sum_probs=25.9

Q ss_pred             CceEeecCCeEEEEeeecCCC------CCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASGSP------PPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~------~~~~~W~~~   87 (151)
                      ..+.+.+|+++.|.|.+.+.+      .+.+.|++.
T Consensus        13 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~   48 (264)
T 2gjj_A           13 SSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQ   48 (264)
T ss_dssp             SEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEE
T ss_pred             CeEEecCCCcEEEEeEcCCcccccccCCceEEEEEE
Confidence            567888999999999998877      678999984

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=98.44  E-value=1.1e-07  Score=62.27  Aligned_cols=31  Identities=16%  Similarity=0.496  Sum_probs=24.9

Q ss_pred             eecCCcEEEEeeeccc-CC-CeeEEEcCCceec
Q psy16421        113 AHEGQQLVLECISEAY-PK-SVNYWTREKGDMI  143 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g~-p~-~~~~W~k~~~~~~  143 (151)
                      +..|+.+.|.|.+.|. |. +.++|+|||..+.
T Consensus       119 ~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  151 (214)
T 1ow0_A          119 LALNELVTLTCLARGFSPKDVLVRWLQGSQELP  151 (214)
T ss_dssp             TTSSSEEEEEEEEEEESSSCCEEEEEETTEECC
T ss_pred             hccCCceEEEEEEeeeECCCcEEEEEECCEECC
Confidence            4578889999999995 54 4799999987654

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.43  E-value=7.7e-07  Score=60.47  Aligned_cols=30  Identities=20%  Similarity=0.575  Sum_probs=26.5

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~   87 (151)
                      ..+.+.+|+++.|.|.+.+.+.+.+.|++.
T Consensus        32 ~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~   61 (279)
T 2wbj_D           32 SWVISKSGTSVKIECRSLDFQATTMFWYRQ   61 (279)
T ss_dssp             SEEEEETTSCEEEEEEESSSCEEEEEEEEE
T ss_pred             CeEEecCCCeEEEEEEeCCCCCCeEEEEEe
Confidence            567888999999999998888889999984

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=98.43  E-value=1.9e-07  Score=53.59  Aligned_cols=45  Identities=11%  Similarity=0.253  Sum_probs=36.1

Q ss_pred             CCCeeeeCC----ceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        100 VPPIVKIPS----QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       100 ~~p~~~~~~----~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      .+|.|...+    ....+.+|+++.|.|.+.|.|.|.+.|+|+|..+..
T Consensus         3 ~~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~   51 (100)
T 3caf_A            3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQ   51 (100)
T ss_dssp             EEEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCG
T ss_pred             CCCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEccc
Confidence            356665433    466788999999999999999999999999876654

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.42  E-value=8.9e-08  Score=54.72  Aligned_cols=45  Identities=13%  Similarity=0.172  Sum_probs=38.1

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      .+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+|++..+..
T Consensus         9 ~~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~   53 (96)
T 2ens_A            9 EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPL   53 (96)
T ss_dssp             CSCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSS
T ss_pred             CCCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcC
Confidence            456677777777899999999999999999999999999776643

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=98.42  E-value=5.9e-08  Score=57.99  Aligned_cols=46  Identities=20%  Similarity=0.356  Sum_probs=39.4

Q ss_pred             CCCCCeeeeCCceeEeecCCcEEEEeeecccCCCe-eEEEcCCceecc
Q psy16421         98 NTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSV-NYWTREKGDMIA  144 (151)
Q Consensus        98 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~k~~~~~~~  144 (151)
                      +..+|.|.. +....+.+|+++.|.|.+.|.|.|. +.|++++..+..
T Consensus        11 V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~   57 (122)
T 2cry_A           11 VNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLES   57 (122)
T ss_dssp             CCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECS
T ss_pred             EecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccC
Confidence            456788877 6777889999999999999999997 999999876654

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=98.41  E-value=4e-07  Score=51.85  Aligned_cols=44  Identities=16%  Similarity=0.208  Sum_probs=37.3

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      .+.|...+....+.+|+++.|.|.+ +.|.+.+.|+|+|..+..+
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~   51 (95)
T 2k1m_A            8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISAS   51 (95)
T ss_dssp             CCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSS
T ss_pred             CCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCC
Confidence            4567777788899999999999999 8888999999998777543

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=98.41  E-value=3.8e-07  Score=53.24  Aligned_cols=39  Identities=13%  Similarity=0.100  Sum_probs=33.9

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCC---CeeEEEcCC
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPK---SVNYWTREK  139 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~---~~~~W~k~~  139 (151)
                      .|.|...+..+.+.+|+++.|.|.+.|.|.   |.++|+|++
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~   45 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGK   45 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETT
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCC
Confidence            466777788889999999999999999998   999999976

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=1.5e-07  Score=54.74  Aligned_cols=47  Identities=15%  Similarity=0.165  Sum_probs=38.4

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCC-eeEEEcCCceeccCC
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKS-VNYWTREKGDMIANG  146 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~k~~~~~~~~~  146 (151)
                      .++.|...+....+.+|+++.|.|.+.+.|.+ .+.|+|||..+..+.
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~   54 (104)
T 2eny_A            7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSS   54 (104)
T ss_dssp             CCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCS
T ss_pred             CCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCC
Confidence            35567777888899999999999999998754 799999987765543

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=98.40  E-value=7.8e-07  Score=50.73  Aligned_cols=41  Identities=17%  Similarity=0.167  Sum_probs=34.4

Q ss_pred             eeeCCceeEeecCCcEEEEeeeccc-CCCeeEEEcCCceecc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAY-PKSVNYWTREKGDMIA  144 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~k~~~~~~~  144 (151)
                      +...+....+.+|+++.|.|.+.|. |.|.+.|+|++..+..
T Consensus         4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~   45 (97)
T 2bk8_A            4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLEN   45 (97)
T ss_dssp             EECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCS
T ss_pred             eeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcC
Confidence            4455677889999999999999997 9999999999776543

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.40  E-value=1.6e-06  Score=57.02  Aligned_cols=29  Identities=17%  Similarity=0.612  Sum_probs=24.6

Q ss_pred             ecCCcEEEEeeeccc-CCC-eeEEEc-CCcee
Q psy16421        114 HEGQQLVLECISEAY-PKS-VNYWTR-EKGDM  142 (151)
Q Consensus       114 ~~g~~~~l~C~~~g~-p~~-~~~W~k-~~~~~  142 (151)
                      .+|+.+.|.|.+.|. |.| .++|++ ||..+
T Consensus       139 ~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l  170 (223)
T 1dee_B          139 NPSSTVAVGCLAQDFLPDSITFSWKYKNNSDI  170 (223)
T ss_dssp             CSSSEEEEEEEEEEEBSSCCEEEEEETTSCBC
T ss_pred             CCCCcEEEEEEEEEEeCCCeEEEeEccCCCcc
Confidence            478999999999986 777 899999 77654

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.40  E-value=1.2e-06  Score=57.55  Aligned_cols=29  Identities=21%  Similarity=0.510  Sum_probs=24.7

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEeC
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRRE   87 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~~   87 (151)
                      .+.+.+|+++.|.|.+.+.+  .+.+.|++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~   39 (225)
T 1op3_H            9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRR   39 (225)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CeEecCCCCEEEEEEecCcccCCceEEEEEe
Confidence            46788999999999998866  688999974

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=3.4e-07  Score=52.88  Aligned_cols=45  Identities=13%  Similarity=0.253  Sum_probs=38.5

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ..||.|...+....+.+|+++.|.|.+.+ |.+.+.|+|++..+..
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~   50 (103)
T 2edf_A            6 SGPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRK   50 (103)
T ss_dssp             CCCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCC
T ss_pred             CCCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccC
Confidence            45778888888889999999999999998 8889999999876644

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.38  E-value=4.6e-07  Score=53.71  Aligned_cols=46  Identities=24%  Similarity=0.372  Sum_probs=37.4

Q ss_pred             CCCCCeeeeC---CceeEeecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421         98 NTVPPIVKIP---SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus        98 ~~~~p~~~~~---~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      +..+|.|...   .....+.+|+++.|.|.+.|.|.|.+.|+|+|..+.
T Consensus        18 v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~   66 (118)
T 2e7c_A           18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD   66 (118)
T ss_dssp             CSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC
T ss_pred             eccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC
Confidence            3456777543   466788999999999999999999999999977664

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.37  E-value=3.2e-06  Score=57.01  Aligned_cols=38  Identities=21%  Similarity=0.329  Sum_probs=28.8

Q ss_pred             CCeeEeCCCCCceEeecCCeEEEEeeecCCC-----CCeEEEEeC
Q psy16421         48 PPDILDYPTSSDIMVREGSNVSMRCAASGSP-----PPSIMWRRE   87 (151)
Q Consensus        48 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~-----~~~~~W~~~   87 (151)
                      .+.+...+  ..+.+.+|+++.|.|.+.+.+     .+.+.|++.
T Consensus        15 ~~~v~~~p--~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~   57 (268)
T 1x9q_A           15 DVVMTQTP--LSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQ   57 (268)
T ss_dssp             CCCEEEEC--SEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             cceEEeeC--CeEEecCCCCEEEEeEecCCcccccCCceEEEEEE
Confidence            34444444  467788999999999998876     478999974

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.37  E-value=5.1e-07  Score=52.53  Aligned_cols=46  Identities=9%  Similarity=0.109  Sum_probs=37.1

Q ss_pred             CCCCeeeeCCce-eEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421         99 TVPPIVKIPSQL-IGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus        99 ~~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      ..+|.|...+.. ..+.+|+++.|.|.+ +.|.+.+.|+|+|..+..+
T Consensus        13 ~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~   59 (104)
T 1pd6_A           13 KKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMS   59 (104)
T ss_dssp             STTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCC
T ss_pred             cCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCC
Confidence            356666665444 789999999999999 7899999999998877654

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.37  E-value=1.1e-06  Score=57.29  Aligned_cols=74  Identities=16%  Similarity=0.337  Sum_probs=44.3

Q ss_pred             CccccccCCeEEEEEEEcCCCC--------C--CccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP--------S--VSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSM   70 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~--------~--~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l   70 (151)
                      |.+++.+|+|.|.|.+.+..+.        .  ......|.|....       ....+|.+         .+..+ .+.|
T Consensus        75 I~~v~~~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~-------~~~~~P~v---------~~~~~-~~~l  137 (207)
T 1ypz_E           75 IRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKS-------QPPAKPSV---------FIMKN-GTNV  137 (207)
T ss_dssp             ECSCCGGGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCC-------CCCCCCEE---------EEEEE-TTEE
T ss_pred             ECCCCHHHCEEEEEEEecCCcccccccccceeeecCccEEEEccCC-------CCCCCCeE---------EEeCC-CCeE
Confidence            6789999999999999987420        1  1233566664110       00112322         22222 3789


Q ss_pred             EeeecC-CCC-CeEEEEeCCeeeEe
Q psy16421         71 RCAASG-SPP-PSIMWRREGGEMIT   93 (151)
Q Consensus        71 ~C~~~g-~~~-~~~~W~~~~~~~~~   93 (151)
                      .|.+.+ .|. +.+.|++ + +.+.
T Consensus       138 ~C~~~g~~P~~~~v~W~~-~-~~l~  160 (207)
T 1ypz_E          138 ACLVKDFYPKEVTISLRS-S-KKIV  160 (207)
T ss_dssp             EEEEEEESSSCCEEEEEC-S-SEEE
T ss_pred             EEEEeeEeCCCeEEEEec-C-Cccc
Confidence            999877 454 7999999 4 4544

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=98.37  E-value=9.4e-06  Score=52.13  Aligned_cols=85  Identities=19%  Similarity=0.245  Sum_probs=53.5

Q ss_pred             CceEeecCCeEEEEeeecCCCCCe-EEEEeCCeeeEe-cc------------c--C--------------------CC-C
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPS-IMWRREGGEMIT-NS------------F--N--------------------NT-V  100 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~-~~W~~~~~~~~~-~~------------~--~--------------------~~-~  100 (151)
                      ....+.+|+++.|.|.+.. +.|. +.|.-.-++... ..            .  .                    ++ .
T Consensus         7 ~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~~~~~~~l~l~~vs~~g~y~C~~~c~~~~~~~~~~l~V~~~   85 (185)
T 1iam_A            7 SKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWT   85 (185)
T ss_dssp             SEEEEETTEEEEEEEEECS-SSCSEEEEECSSCEEEECSSSSSEEEEEEEEECSCBCCEEEEECSSCEEEEECEEEEEBC
T ss_pred             CCcEEeCCCCEEEEEEccC-CCCccceEEeeCCCccEeccCCceeEEEEEecCcCCEEEEEEECCCCceEEEEEEEEeCC
Confidence            3466889999999999865 4444 666421111111 10            0  0                    12 2


Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecc-cCCC--eeEEEcCCceec
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEA-YPKS--VNYWTREKGDMI  143 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~--~~~W~k~~~~~~  143 (151)
                      |..+.+.+....+.+|+.++|.|.+.| .|.+  .|.|+|++..+.
T Consensus        86 P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~  131 (185)
T 1iam_A           86 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELK  131 (185)
T ss_dssp             CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEE
T ss_pred             CCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcc
Confidence            334455555455899999999999998 5554  389999876553

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=2.1e-07  Score=53.84  Aligned_cols=44  Identities=14%  Similarity=0.247  Sum_probs=35.7

Q ss_pred             CCCeeeeCCce---eEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        100 VPPIVKIPSQL---IGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       100 ~~p~~~~~~~~---~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      .+|.+...+..   ..+.+|+++.|.|.+.+.|.+ +.|+|++..+..
T Consensus         6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~   52 (104)
T 2e6p_A            6 SGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEE   52 (104)
T ss_dssp             SSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCC
T ss_pred             CCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCC
Confidence            35666555555   788999999999999999999 999999876654

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=98.36  E-value=2.9e-06  Score=50.04  Aligned_cols=79  Identities=28%  Similarity=0.641  Sum_probs=51.3

Q ss_pred             CCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCcee--------EeecCC
Q psy16421         46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLI--------GAHEGQ  117 (151)
Q Consensus        46 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~--------~~~~g~  117 (151)
                      ..+|.+...+  ..+.+.+|+++.|.|.+.|.|.|.+.|++ ++..+...................        .+...+
T Consensus         7 ~~pP~i~~~p--~~~~v~~G~~v~L~C~~~g~P~p~v~W~k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D   83 (117)
T 2v9t_A            7 DFPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPD   83 (117)
T ss_dssp             CEEEEEEECC--CCEEECTTCCEEECCEEEEESCCEEEEEE-TTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSS
T ss_pred             cCCCeeEcCC--CCEEEcCCCcEEEEEECCccCCCeEEEEE-CCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCc
Confidence            3577777766  57788999999999999999999999999 555554321100001111111110        124678


Q ss_pred             cEEEEeeecc
Q psy16421        118 QLVLECISEA  127 (151)
Q Consensus       118 ~~~l~C~~~g  127 (151)
                      .....|.+..
T Consensus        84 ~G~Y~C~a~N   93 (117)
T 2v9t_A           84 EGVYVCVARN   93 (117)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEEe
Confidence            8899999863

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.35  E-value=3.6e-06  Score=49.38  Aligned_cols=74  Identities=23%  Similarity=0.343  Sum_probs=50.3

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCC-----CCeeeeCCceeEeecCCcEEE
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV-----PPIVKIPSQLIGAHEGQQLVL  121 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~-----~p~~~~~~~~~~~~~g~~~~l  121 (151)
                      .+|.+...+  ..+.+.+|+.+.|.|.+.|.|.+.+.|++ +++.+....+...     .-.+.+.    .+...+....
T Consensus         6 ~pp~i~~~~--~~~~v~~G~~v~l~C~~~g~p~p~i~W~k-~~~~~~~~~~~~~~~~~~~~~L~I~----~v~~~D~G~Y   78 (114)
T 2cqv_A            6 SGPQIIQFP--EDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQIQESEHMKVENSENGSKLTIL----AARQEHCGCY   78 (114)
T ss_dssp             CCCEESCCC--CSEEEETTCCEEEEEEEESSSSCEEEEEE-SSSBCCCSSSEEEEECSSEEEEEET----TCCTTTCEEE
T ss_pred             CCCEEEeCC--CCeEEeCCCeEEEEEEEEcCCCCEEEEEE-CCEECcCCCCEEEEEcCCEEEEEEC----CCChhcCEEE
Confidence            577777665  67889999999999999999999999999 5555443211000     0011111    2456788889


Q ss_pred             Eeeecc
Q psy16421        122 ECISEA  127 (151)
Q Consensus       122 ~C~~~g  127 (151)
                      .|.+..
T Consensus        79 ~C~a~N   84 (114)
T 2cqv_A           79 TLLVEN   84 (114)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            998753

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=98.35  E-value=3.2e-07  Score=60.55  Aligned_cols=73  Identities=16%  Similarity=0.398  Sum_probs=44.7

Q ss_pred             CccccccCCeEEEEEEEcCCC--------CCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVP--------PSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRC   72 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~--------~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C   72 (151)
                      |.+++.+|+|.|.|.+.+..+        ........|.|..         ....+|.+...+  ....+.+|+.+.|.|
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~---------~~~~~P~i~~~~--~~~~~~~g~~~~l~C  151 (226)
T 3mlr_H           83 WTTLQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSS---------GTTKGPSVFPLA--PSSKSTSGGTAALGC  151 (226)
T ss_dssp             ESSCCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECC---------CCCBCCEEEEEE--EEECSTTSSEEEEEE
T ss_pred             ECCCCcccCEEEEEeEccCCCcccccchhhhhCCccEEeecc---------CCCCCCcEEEec--CcccccCCCCEEEEE
Confidence            678999999999999977531        0111233455531         112345554221  122345789999999


Q ss_pred             eecC-CC-CCeEEE
Q psy16421         73 AASG-SP-PPSIMW   84 (151)
Q Consensus        73 ~~~g-~~-~~~~~W   84 (151)
                      .+.+ .| .+.+.|
T Consensus       152 ~~~~~~p~~~~v~W  165 (226)
T 3mlr_H          152 LVKDYFPEPVTVSW  165 (226)
T ss_dssp             EEEEEBSSCCEEEE
T ss_pred             EEEEEECCCeEEEE
Confidence            9877 44 467899

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=98.33  E-value=4.1e-07  Score=60.85  Aligned_cols=76  Identities=18%  Similarity=0.303  Sum_probs=44.5

Q ss_pred             ccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CCCC-e
Q psy16421          4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SPPP-S   81 (151)
Q Consensus         4 v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~~~-~   81 (151)
                      ...+|.|.|+|++.+..+. ......+...         +....+|.+...+.  .....+|+.+.|.|.+.+ .|.+ .
T Consensus        96 ~~~~d~~~YtC~v~h~~~~-~~~~~~i~~~---------~~~~~~P~V~v~~~--~~~~~~g~~~~L~C~~~gf~P~~i~  163 (240)
T 4acp_A           96 QDWLNGKEYKCKVSNKALP-APIEKTISKA---------KGQPREPQVYTLPP--SRDELTKNQVSLTCLVKGFYPSDIA  163 (240)
T ss_dssp             HHHHHTCCEEEEEECC-----CEEEEECCC---------CSCCBCCEEEEECC--CGGGGGSSEEEEEEEEEEEBSSCCE
T ss_pred             hhccCCCEEEEEEEcCCCC-cccccccccc---------CCCCCCCEEEEECC--ChHHhcCCceEEEEEEeEEeCCCcE
Confidence            3445789999999998652 1111121110         12235666655442  222234889999999988 5553 7


Q ss_pred             EEEEeCCeeeE
Q psy16421         82 IMWRREGGEMI   92 (151)
Q Consensus        82 ~~W~~~~~~~~   92 (151)
                      +.|++ +++.+
T Consensus       164 v~W~k-~g~~~  173 (240)
T 4acp_A          164 VEWES-NGQPE  173 (240)
T ss_dssp             EEEEE-TTEEC
T ss_pred             EEEEE-CCEEC
Confidence            99999 56554

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.33  E-value=2.4e-06  Score=57.17  Aligned_cols=29  Identities=28%  Similarity=0.511  Sum_probs=25.4

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|.+.+.+.+.+.|++
T Consensus         9 ~~v~v~~G~~v~L~C~~~~~~~~~v~W~r   37 (253)
T 3to4_D            9 RWRLVPRGQAVNLRCILKNSQYPWMSWYQ   37 (253)
T ss_dssp             SEEEEESSCCEEEEEECSCTTCCCEEEEE
T ss_pred             CeEEEeCCCcEEEEEEeCCCCcceEEEEE
Confidence            45678899999999998888889999987

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=98.33  E-value=5.8e-07  Score=51.78  Aligned_cols=77  Identities=16%  Similarity=0.193  Sum_probs=51.5

Q ss_pred             ecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCC-----ceeEeecCCc
Q psy16421         44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPS-----QLIGAHEGQQ  118 (151)
Q Consensus        44 ~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~-----~~~~~~~g~~  118 (151)
                      .+..+|.+...+  ....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....+    -.+....     ....+...+.
T Consensus         4 ~~~~~P~~~~~~--~~~~v~~G~~v~l~C~~~g~p~p~i~W~k-~~~~~~~~~~----~~~~~~~~~~~L~i~~~~~~D~   76 (103)
T 3qp3_A            4 TLDHAPRITLRM--RSHRVPCGQNTRFILNVQSKPTAEVKWYH-NGVELQESSK----IHYTNTSGVLTLEILDCHTDDS   76 (103)
T ss_dssp             TTCEEEEEEECC--CCEEEETTCCEEEEEEEEEESCCEEEEEE-TTEECCCCSS----EEEEEETTEEEEEECSCCGGGC
T ss_pred             CCCCCCEEEeCC--cceEEeCCCeEEEEEEEEecCCCEEEEEE-CCEECCCCCC----EEEEECCCEEEEEEcCCCcccC
Confidence            344577777766  67889999999999999999999999999 5655543221    0111100     0112345777


Q ss_pred             EEEEeeecc
Q psy16421        119 LVLECISEA  127 (151)
Q Consensus       119 ~~l~C~~~g  127 (151)
                      ....|.+..
T Consensus        77 G~Y~C~a~N   85 (103)
T 3qp3_A           77 GTYRAVCTN   85 (103)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            888998753

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.33  E-value=8.3e-07  Score=51.19  Aligned_cols=44  Identities=14%  Similarity=0.161  Sum_probs=37.7

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      .+|.|...+....+.+|+++.|.|. .+.|.+.+.|+|++..+..
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~   50 (103)
T 2dku_A            7 GANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRA   50 (103)
T ss_dssp             CCCCCSSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCS
T ss_pred             CCCEeEecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCC
Confidence            4677877888889999999999999 5889999999999876654

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=98.32  E-value=6.9e-06  Score=46.18  Aligned_cols=68  Identities=22%  Similarity=0.337  Sum_probs=47.1

Q ss_pred             CeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        49 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +.+...+  ....+.+|+.+.|.|.+.|.|.|.+.|++ +++.+...    ....+.+..    +...+.....|.+..
T Consensus         4 ~~i~~~p--~~~~v~~G~~~~l~C~~~g~p~p~i~W~~-~~~~~~~~----~~~~L~i~~----v~~~d~G~Y~C~a~n   71 (91)
T 3bfo_A            4 LQICVEP--TSQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTHE----TKKLYMVPY----VDLEHQGTYWCHVYN   71 (91)
T ss_dssp             CEEEECC--CCEEECTTSCEEEECEEECSSCCEEEEEE-TTEECTTC----CSSEEEESS----CCGGGCEEEEEEEEC
T ss_pred             eEEEECC--CccEecCCCcEEEEEEeccCCCCEEEEEc-CCeeCCcC----CCCeEEECC----CCHHhCEEEEEEEEc
Confidence            4444444  46778899999999999999999999999 56554421    112333332    345677889999864

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=98.32  E-value=1.1e-06  Score=50.41  Aligned_cols=44  Identities=9%  Similarity=0.057  Sum_probs=36.1

Q ss_pred             CCCeeeeCCce-eEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        100 VPPIVKIPSQL-IGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       100 ~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      .+|.|...+.. ..+.+|+++.|.|.+. .|.+.+.|+|+|..+..
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~   50 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRP   50 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCC
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCC
Confidence            46777776655 6788999999999998 79999999999876644

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.30  E-value=4.4e-06  Score=57.15  Aligned_cols=31  Identities=13%  Similarity=0.329  Sum_probs=26.6

Q ss_pred             CceeEeecCCcEEEEeeecccCCC------eeEEEcC
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKS------VNYWTRE  138 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~------~~~W~k~  138 (151)
                      +....+.+|+++.|.|.+.+.|.+      .+.|+|+
T Consensus       166 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~  202 (291)
T 2gki_A          166 PSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQ  202 (291)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEE
T ss_pred             CCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEE
Confidence            445678899999999999998876      8999996

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.28  E-value=4.3e-06  Score=53.29  Aligned_cols=30  Identities=17%  Similarity=0.328  Sum_probs=24.2

Q ss_pred             CceEeecCCeEEEEeeecC-CCCCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASG-SPPPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g-~~~~~~~W~~~   87 (151)
                      ..+.+.+|+++.|.|.+.+ .+.+.+.|++.
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~   37 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHT   37 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESS
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEec
Confidence            4567889999999999855 34789999983

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.28  E-value=4.2e-06  Score=54.72  Aligned_cols=29  Identities=14%  Similarity=0.568  Sum_probs=24.4

Q ss_pred             ecCCcEEEEeeecc-cCC-C-eeEEEcCCcee
Q psy16421        114 HEGQQLVLECISEA-YPK-S-VNYWTREKGDM  142 (151)
Q Consensus       114 ~~g~~~~l~C~~~g-~p~-~-~~~W~k~~~~~  142 (151)
                      .+|+.+.|.|.+.| .|. + .++|+|+|..+
T Consensus       136 ~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~  167 (221)
T 3m8o_H          136 QPDGNVVIACLVQGFFPQEPLSVTWSESGQGV  167 (221)
T ss_dssp             CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTC
T ss_pred             ccCCCEEEEEEEEeeECCCCEEEEEEECCEEC
Confidence            57999999999998 776 4 79999987654

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=98.27  E-value=1e-06  Score=57.36  Aligned_cols=46  Identities=22%  Similarity=0.354  Sum_probs=38.1

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      ..+|.| ..+....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+
T Consensus        17 ~~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~   62 (215)
T 3mtr_A           17 MYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSS   62 (215)
T ss_dssp             CEEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCS
T ss_pred             ecCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCC
Confidence            456677 4556688999999999999999999999999998766544

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.26  E-value=5.9e-06  Score=54.37  Aligned_cols=29  Identities=21%  Similarity=0.556  Sum_probs=23.6

Q ss_pred             eecCCcEEEEeeeccc-CCC-eeEEEcCCce
Q psy16421        113 AHEGQQLVLECISEAY-PKS-VNYWTREKGD  141 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g~-p~~-~~~W~k~~~~  141 (151)
                      +.+|+.+.|.|.+.|. |.| .++|+|++..
T Consensus       142 ~~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~  172 (228)
T 3bae_H          142 DTTGSSVTLGCLVKGYFPEPVTLTWNSGSLS  172 (228)
T ss_dssp             --CCSEEEEEEEEEEEBSSCCEEEEGGGTCC
T ss_pred             ccCCCCEEEEEEEccEeCCCEEEEEeeCCcc
Confidence            4579999999999986 877 8999998754

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.25  E-value=3.9e-06  Score=53.69  Aligned_cols=28  Identities=7%  Similarity=-0.020  Sum_probs=24.3

Q ss_pred             cCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421        115 EGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       115 ~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      .+.++.|.|.+.+.|.|.+.|+++|..+
T Consensus       114 ~~~~v~L~C~~~~~p~~~~~W~~~g~~l  141 (182)
T 1hnf_A          114 TCINTTLTCEVMNGTDPELNLYQDGKHL  141 (182)
T ss_dssp             ETTTTEEEEECSSCSSCEEEEEESSCEE
T ss_pred             ccCcEEEEeEccCCCCCEEEEEECCEEC
Confidence            3458999999999999999999998765

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=98.25  E-value=2e-06  Score=49.81  Aligned_cols=44  Identities=9%  Similarity=0.197  Sum_probs=33.0

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      ..||.+.....   ...+..+.|.|.+.|.|.|.++|+|+|..+..+
T Consensus         2 ~~pP~i~~~~~---~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~   45 (103)
T 1wwb_X            2 HFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNES   45 (103)
T ss_dssp             CCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCC
T ss_pred             CCCCEEEeccC---ceECcEEEEEEEEEEeCCCEEEEEECCEECCCC
Confidence            35666542221   346889999999999999999999998776544

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=98.24  E-value=5.8e-06  Score=55.29  Aligned_cols=29  Identities=24%  Similarity=0.591  Sum_probs=24.2

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~   87 (151)
                      ..+.+.+|+++.|.|.+.. +.+.+.|++.
T Consensus        11 ~~v~v~~G~~v~L~C~~~~-~~~~v~W~r~   39 (252)
T 1oga_E           11 KYLFRKEGQNVTLSCEQNL-NHDAMYWYRQ   39 (252)
T ss_dssp             SEEEEETTCCEEECCEECS-CCSEEEEEEE
T ss_pred             CeEEEcCCCcEEEEEEeCC-CCCEEEEEEE
Confidence            4577889999999999854 5789999984

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=98.23  E-value=4.2e-06  Score=48.46  Aligned_cols=76  Identities=21%  Similarity=0.420  Sum_probs=44.4

Q ss_pred             cCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCC---CCCCeeeeCCceeEeecCCcEEE
Q psy16421         45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN---TVPPIVKIPSQLIGAHEGQQLVL  121 (151)
Q Consensus        45 ~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~g~~~~l  121 (151)
                      +..+|.+...+  ....+.+|+.+.|.|.+.|.|.+.+.|++ ++..+......   .....+.+.    .+...+....
T Consensus         7 ~~~~P~~~~~~--~~~~v~~G~~v~l~C~~~g~p~p~i~W~~-~~~~~~~~~~~~~~~~~~~L~i~----~v~~~D~G~Y   79 (108)
T 3kvq_A            7 ERVAPTITGNL--ENQTTSIGESIEVSCTASGNPPPQIMWFK-DNETLVEDSGIVLKDGNRNLTIR----RVRKEDEGLY   79 (108)
T ss_dssp             ----CCCBSCC--CCEEEETTCCEEEECBCC----CCEEEEE-SSSBCCCBTTEEEETTTTEEEEC----SCCGGGCEEE
T ss_pred             ccCCCceecCC--CCeEEeCCCeEEEEEECcCcCCCeEEEEE-CCeEcccCCCeEEeCCCcEEEEe----ecCcccCEEE
Confidence            34677777766  67888999999999999999999999999 45444322110   011122221    2345778888


Q ss_pred             Eeeecc
Q psy16421        122 ECISEA  127 (151)
Q Consensus       122 ~C~~~g  127 (151)
                      .|.+..
T Consensus        80 ~C~a~n   85 (108)
T 3kvq_A           80 TCQACS   85 (108)
T ss_dssp             EEEEC-
T ss_pred             EEEEEe
Confidence            998864

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=98.23  E-value=4.3e-06  Score=48.41  Aligned_cols=46  Identities=11%  Similarity=0.260  Sum_probs=37.8

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecccC--CCeeEEEcCCceecc
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYP--KSVNYWTREKGDMIA  144 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~k~~~~~~~  144 (151)
                      ..+|.|...+....+.+|+++.|.|.+.+.|  .+.+.|+|++..+..
T Consensus         8 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~   55 (112)
T 3so5_A            8 FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQD   55 (112)
T ss_dssp             CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTT
T ss_pred             CCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCccccc
Confidence            4578888888888899999999999999654  578999999776543

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.23  E-value=1.3e-05  Score=53.02  Aligned_cols=31  Identities=16%  Similarity=0.401  Sum_probs=25.3

Q ss_pred             ecCCcEEEEeeeccc-CCC-eeEEEcCCceecc
Q psy16421        114 HEGQQLVLECISEAY-PKS-VNYWTREKGDMIA  144 (151)
Q Consensus       114 ~~g~~~~l~C~~~g~-p~~-~~~W~k~~~~~~~  144 (151)
                      ..|+.+.|.|.+.|. |.+ .+.|+|||..+..
T Consensus       134 ~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~~~  166 (238)
T 1bec_A          134 ANKQKATLVCLARGFFPDHVELSWWVNGKEVHS  166 (238)
T ss_dssp             SSSCSCSEEEEEEEEBSCCEEEEEEETTEEECT
T ss_pred             ccCCceEEEEEEeeEeCCCcEEEEEECCEECCC
Confidence            469999999999985 655 7999999876643

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=98.22  E-value=9e-06  Score=54.42  Aligned_cols=29  Identities=17%  Similarity=0.497  Sum_probs=22.3

Q ss_pred             EeecCCcEEEEeeecc-cCCC-eeEEEcCCc
Q psy16421        112 GAHEGQQLVLECISEA-YPKS-VNYWTREKG  140 (151)
Q Consensus       112 ~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~  140 (151)
                      .+..|+.+.|.|.+.| .|.+ .++|++++.
T Consensus       135 ~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~  165 (253)
T 3liz_H          135 AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  165 (253)
T ss_dssp             ----CCEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             ccCCCCcEEEEEEEeeEeCCCeEEEEEeCCe
Confidence            3457999999999998 7777 799999876

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.22  E-value=9.8e-06  Score=53.55  Aligned_cols=29  Identities=17%  Similarity=0.593  Sum_probs=22.4

Q ss_pred             ecC-CcEEEEeeeccc-CCC-eeEEEc-CCcee
Q psy16421        114 HEG-QQLVLECISEAY-PKS-VNYWTR-EKGDM  142 (151)
Q Consensus       114 ~~g-~~~~l~C~~~g~-p~~-~~~W~k-~~~~~  142 (151)
                      ..| +.+.|.|.+.|. |.| .++|++ ||..+
T Consensus       138 ~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l  170 (232)
T 1dn0_B          138 PSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDI  170 (232)
T ss_dssp             ---CCSEEEEEEEEEEBSSCCEEEEEETTSCEE
T ss_pred             CCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCce
Confidence            367 999999999985 776 899999 87655

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=98.22  E-value=2e-06  Score=49.09  Aligned_cols=74  Identities=19%  Similarity=0.246  Sum_probs=49.5

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC----CCC--eeeeCCceeEeecCCcEE
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT----VPP--IVKIPSQLIGAHEGQQLV  120 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~----~~p--~~~~~~~~~~~~~g~~~~  120 (151)
                      .+|.+...+  ....+.+|+.+.|.|.+.|.|.+.+.|++ +++.+.......    ..-  .+.+.    .+...+...
T Consensus         4 ~~P~~~~~~--~~~~v~~G~~v~l~C~~~g~p~p~v~W~k-~g~~~~~~~~~~~~~~~~~~~~L~i~----~v~~~D~G~   76 (99)
T 1g1c_A            4 EAPKIFERI--QSQTVGQGSDAHFRVRVVGKPDPECEWYK-NGVKIERSDRIYWYWPEDNVCELVIR----DVTGEDSAS   76 (99)
T ss_dssp             EEEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCCSSEEEEEEETTEEEEEEC----SCCGGGCEE
T ss_pred             CCCceEecC--cceEEcCCCcEEEEEEEEEeCCCEEEEEE-CCEECCCCCCEEEEEcCCCEEEEEEC----CCCcCCCEE
Confidence            456776665  57888999999999999999999999999 566554322100    000  11111    244677888


Q ss_pred             EEeeecc
Q psy16421        121 LECISEA  127 (151)
Q Consensus       121 l~C~~~g  127 (151)
                      ..|.+..
T Consensus        77 Y~C~a~N   83 (99)
T 1g1c_A           77 IMVKAIN   83 (99)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999864

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=98.20  E-value=6.1e-07  Score=53.36  Aligned_cols=32  Identities=28%  Similarity=0.527  Sum_probs=26.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |.+++.+|+|.|+|.|.|..| .....+.|.|.
T Consensus        78 I~~v~~~DsG~Y~C~a~n~~g-~~~~~~~l~V~  109 (122)
T 3s35_X           78 IDGVTRSDQGLYTCAASSGLM-TKKNSTFVRVH  109 (122)
T ss_dssp             ESSCCGGGCEEEEEEEECSSC-EEEEEEEEEEE
T ss_pred             ECCCCcccCEEEEEEEccCCC-ceEEEEEEEEe
Confidence            578999999999999999988 45566666664

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.20  E-value=1.8e-06  Score=52.03  Aligned_cols=38  Identities=16%  Similarity=0.101  Sum_probs=32.9

Q ss_pred             CeeeeCCceeEeecCCcEEEEeeeccc---CCCeeEEEcCC
Q psy16421        102 PIVKIPSQLIGAHEGQQLVLECISEAY---PKSVNYWTREK  139 (151)
Q Consensus       102 p~~~~~~~~~~~~~g~~~~l~C~~~g~---p~~~~~W~k~~  139 (151)
                      +.|...+..+.+.+|+++.|.|.+.|.   |.|.|.|||++
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk   48 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGK   48 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESS
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCc
Confidence            457777888899999999999999875   89999999973

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.20  E-value=1.6e-06  Score=49.58  Aligned_cols=74  Identities=18%  Similarity=0.379  Sum_probs=49.2

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC----CC--CeeeeCCceeEeecCCcEE
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT----VP--PIVKIPSQLIGAHEGQQLV  120 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~----~~--p~~~~~~~~~~~~~g~~~~  120 (151)
                      .+|.+...+  ..+.+.+|+.+.|.|.+.|.|.+.+.|++ +++.+.......    ..  ..+.+.    .+...+...
T Consensus         4 ~~P~~~~~p--~~~~~~~G~~~~l~C~~~g~p~p~v~W~~-~g~~~~~~~~~~~~~~~~~~~~L~i~----~v~~~D~G~   76 (100)
T 2kdg_A            4 GPPRFIQVP--ENMSIDEGRFCRMDFKVSGLPAPDVSWYL-NGRTVQSDDLHKMIVSEKGLHSLIFE----VVRASDAGA   76 (100)
T ss_dssp             EEEECCCCC--CCEEEETTCCEEEEEECEEESCCEEEEEE-TTEEECCCSSSCEEEETTTEEEEEES----SCCGGGCEE
T ss_pred             CCCeEEeCC--CCEEecCCCEEEEEEEEEeeCCCEEEEEE-CCEECcCCCcEEEEEcCCCeEEEEEC----CCCcccCEE
Confidence            355665555  56788999999999999999999999999 566655322100    00  012221    244577788


Q ss_pred             EEeeecc
Q psy16421        121 LECISEA  127 (151)
Q Consensus       121 l~C~~~g  127 (151)
                      ..|.+..
T Consensus        77 Y~C~a~n   83 (100)
T 2kdg_A           77 YACVAKN   83 (100)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEc
Confidence            9999764

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.19  E-value=1.9e-06  Score=50.84  Aligned_cols=75  Identities=15%  Similarity=0.175  Sum_probs=50.1

Q ss_pred             ecCCCC-eeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCC------CeeeeCCceeEeecC
Q psy16421         44 TSSMPP-DILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVP------PIVKIPSQLIGAHEG  116 (151)
Q Consensus        44 ~~~~~p-~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~------p~~~~~~~~~~~~~g  116 (151)
                      .+..+| .+...+  ..+.+.+|+.+.|.|.+.+.|.|.+.|++ ++..+....+....      ..+.+.    .+...
T Consensus         8 ~V~~~p~~~~~~~--~~~~v~~G~~v~l~C~~~g~p~p~v~W~k-~g~~l~~~~~~~~~~~~~~~~~L~I~----~v~~~   80 (115)
T 2cr6_A            8 LVQGRRVHIIEDL--EDVDVQEGSSATFRCRISPANYEPVHWFL-DKTPLHANELNEIDAQPGGYHVLTLR----QLALK   80 (115)
T ss_dssp             CCCSSCCEEEECC--CEEEEETTSCEECCCEEESTTCCSCEEEE-SSCEECCSSSCCBCCBTTTBCCBEEC----SCCTT
T ss_pred             EEcCCCCeEeccC--ccEEEeCCCcEEEEEEEcCCCCCccEEEE-CCEECCCCCcEEEEEcCCCEEEEEEc----CCChh
Confidence            334444 666665  67889999999999999999999999999 66666543221110      112221    24567


Q ss_pred             CcEEEEeee
Q psy16421        117 QQLVLECIS  125 (151)
Q Consensus       117 ~~~~l~C~~  125 (151)
                      +.....|.+
T Consensus        81 D~G~Y~C~~   89 (115)
T 2cr6_A           81 DSGTIYFEA   89 (115)
T ss_dssp             TCEEEEEEE
T ss_pred             hCEEEEEEE
Confidence            888889984

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=98.19  E-value=1.6e-06  Score=50.36  Aligned_cols=44  Identities=16%  Similarity=0.213  Sum_probs=36.8

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ..+|.|...+....+.+|+++.|.|.+.+.  |.+.|+|++..+..
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~   49 (108)
T 2dm7_A            6 SGPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRD   49 (108)
T ss_dssp             CCCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCS
T ss_pred             CCCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCC
Confidence            467888878888899999999999999875  68999999776643

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=98.19  E-value=1.8e-06  Score=48.85  Aligned_cols=74  Identities=16%  Similarity=0.303  Sum_probs=46.7

Q ss_pred             CCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCC-eeeEecccCC---CCCCeeeeCCceeEeecCCcEEEEe
Q psy16421         48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG-GEMITNSFNN---TVPPIVKIPSQLIGAHEGQQLVLEC  123 (151)
Q Consensus        48 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~-~~~~~~~~~~---~~~p~~~~~~~~~~~~~g~~~~l~C  123 (151)
                      +|.+...+  ..+.+.+|+.+.|.|.+.|.|.|.+.|++++ +..+......   ...-.+.+.    .+...+.....|
T Consensus         2 ~P~i~~~~--~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~----~~~~~D~G~Y~C   75 (93)
T 1wit_A            2 KPKILTAS--RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFP----SAKRADSGNYKL   75 (93)
T ss_dssp             CCEECCCC--CEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECT----TBCGGGCEEEEE
T ss_pred             CCeEEcCC--CceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEEC----CCChhcCEEEEE
Confidence            45565444  5678889999999999999999999999943 1444321100   000011111    234567788999


Q ss_pred             eecc
Q psy16421        124 ISEA  127 (151)
Q Consensus       124 ~~~g  127 (151)
                      .+..
T Consensus        76 ~a~N   79 (93)
T 1wit_A           76 KVKN   79 (93)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            8864

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.19  E-value=4.7e-06  Score=49.23  Aligned_cols=77  Identities=19%  Similarity=0.336  Sum_probs=52.2

Q ss_pred             cCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeC------CceeEeecCCc
Q psy16421         45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIP------SQLIGAHEGQQ  118 (151)
Q Consensus        45 ~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~------~~~~~~~~g~~  118 (151)
                      ...+|.|...+  ..+.+.+|+.+.|.|.+.|.|.+.+.|++ +++.+.....   .-.+...      .....+...+.
T Consensus        12 ~~~~p~f~~~p--~~~~v~~G~~v~L~C~~~g~p~p~v~W~k-~~~~~~~~~~---~~~~~~~~~~~~~L~I~~v~~~D~   85 (116)
T 2kkq_A           12 HKRAPMFIYKP--QSKKVLEGDSVKLECQISAIPPPKLFWKR-NNEMVQFNTD---RISLYQDNTGRVTLLIKDVNKKDA   85 (116)
T ss_dssp             CCBCCCBSSCC--CCEEEETTEEEEEEEEBCCBSCCEEEEEE-TTEECCCCBT---TEEEEECTTCEEEEEEEEECGGGC
T ss_pred             CCCCCeEEeCC--CcEEEeCCCcEEEEEEEeccCCCEEEEEE-CCEECcCCCC---eEEEEeCCCCeEEEEECCCCcccC
Confidence            34678887777  67899999999999999999999999999 5555442110   0011111      11123556788


Q ss_pred             EEEEeeecc
Q psy16421        119 LVLECISEA  127 (151)
Q Consensus       119 ~~l~C~~~g  127 (151)
                      ....|.+..
T Consensus        86 G~Y~C~a~N   94 (116)
T 2kkq_A           86 GWYTVSAVN   94 (116)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEc
Confidence            889998754

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.18  E-value=9.6e-06  Score=45.20  Aligned_cols=63  Identities=17%  Similarity=0.381  Sum_probs=42.8

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCC-----CCCCeeeeCCceeEeecCCcEEEEeeec
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN-----TVPPIVKIPSQLIGAHEGQQLVLECISE  126 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~~~~g~~~~l~C~~~  126 (151)
                      ..+.+.+|+.+.|.|.+.+ |.|.+.|+| +++.+....+.     ...-.+.+.    .+...+.....|.+.
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k-~g~~l~~~~~~~~~~~~~~~~L~I~----~~~~~D~G~Y~C~a~   71 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYK-DGERLASQGRVQLEQAGARQVLRVQ----GARSGDAGEYLCDAP   71 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEE-TTEECCCCSSEEEEECSSCEEEEES----SCSSTTCEEEEEECT
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEE-CCEEccccccEEEeecCCeEEEEec----CCCCcccEEEEEEEC
Confidence            4678889999999999977 888999999 67776543320     001112221    245678888999873

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.18  E-value=1.7e-06  Score=49.13  Aligned_cols=74  Identities=15%  Similarity=0.297  Sum_probs=43.4

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCC-----CCeeeeCCceeEeecCCcEEE
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV-----PPIVKIPSQLIGAHEGQQLVL  121 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~-----~p~~~~~~~~~~~~~g~~~~l  121 (151)
                      .|+.+..++....+.+.+|+.+.|.|.+.+ |.+.+.|+| |++.+....+...     .-.+.+.    .+...+....
T Consensus         3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k-~g~~i~~~~~~~i~~~~~~~~L~I~----~v~~~D~G~Y   76 (91)
T 2lvc_A            3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYK-DGQEVEESDFVVLENEGPHRRLVLP----ATQPSDGGEF   76 (91)
T ss_dssp             CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEE-TTSCCCCCSSCEEEEETTEEEEEES----SCCGGGCSEE
T ss_pred             CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEE-CCEEeeeeeeeeEEecCCeEEEEeC----CCChhhcEEE
Confidence            455555544212234468999999999976 888999999 6766654332100     0011111    2345666778


Q ss_pred             Eeeec
Q psy16421        122 ECISE  126 (151)
Q Consensus       122 ~C~~~  126 (151)
                      .|.+.
T Consensus        77 ~C~a~   81 (91)
T 2lvc_A           77 QCVAG   81 (91)
T ss_dssp             EEECS
T ss_pred             EEEEc
Confidence            88763

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.18  E-value=1.7e-06  Score=52.10  Aligned_cols=32  Identities=19%  Similarity=0.177  Sum_probs=27.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |.+++++|+|.|+|.+.|..+ ..+..+.|+|.
T Consensus        79 I~~v~~~DaG~Y~Cevsn~~g-~~~~~~~L~V~  110 (126)
T 2dav_A           79 IIKAKDNFAGNYRCEVTYKDK-FDSCSFDLEVH  110 (126)
T ss_dssp             ECSCCTTSCEEEEEEEECSSC-EEEECCEEEEE
T ss_pred             EccCCcccCEEEEEEEEeCCC-cEEEEEEEEEE
Confidence            678999999999999999987 67777888875

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.18  E-value=4.9e-06  Score=47.54  Aligned_cols=74  Identities=20%  Similarity=0.383  Sum_probs=50.4

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccC-C--CCCCeeeeCCceeEeecCCcEEEEe
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN-N--TVPPIVKIPSQLIGAHEGQQLVLEC  123 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~-~--~~~p~~~~~~~~~~~~~g~~~~l~C  123 (151)
                      .+|.+...+  ..+.+.+|+.+.|.|.+.|.|.+.+.|++ ++..+..... .  ...-.+.+    ..+...+.....|
T Consensus         7 ~~P~i~~~p--~~~~v~~G~~~~l~C~~~g~p~p~v~W~~-~~~~~~~~~~~~~~~~~~~L~i----~~v~~~d~G~Y~C   79 (100)
T 2edj_A            7 GPPIILQGP--ANQTLAVDGTALLKCKATGDPLPVISWLK-EGFTFPGRDPRATIQEQGTLQI----KNLRISDTGTYTC   79 (100)
T ss_dssp             SSCEEEECC--CCEEEESSSEEEECCEEECSSCCEEEEEE-SSSEESSSCSSCEECTTCCEEE----ESCCTTTCCEEEE
T ss_pred             CCCEEEeCc--CCEEEcCCCcEEEEEEEEEcCCCEEEEEE-CCEECCCCCCCEEEcCCCEEEE----ccCCcccCEEEEE
Confidence            578887766  67888999999999999999999999999 5555542111 0  00011211    1244577778999


Q ss_pred             eecc
Q psy16421        124 ISEA  127 (151)
Q Consensus       124 ~~~g  127 (151)
                      .+..
T Consensus        80 ~a~n   83 (100)
T 2edj_A           80 VATS   83 (100)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9864

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=98.17  E-value=2.8e-06  Score=48.45  Aligned_cols=74  Identities=24%  Similarity=0.372  Sum_probs=48.9

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC---CC---CeeeeCCceeEeecCCcEE
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT---VP---PIVKIPSQLIGAHEGQQLV  120 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~---~~---p~~~~~~~~~~~~~g~~~~  120 (151)
                      .+|.+...+  ....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.......   ..   -.+.+.    .+...+...
T Consensus         4 ~~P~~~~~~--~~~~v~~G~~v~l~C~~~g~p~p~v~W~k-~~~~~~~~~~~~~~~~~~~~~~L~i~----~~~~~D~G~   76 (99)
T 1u2h_A            4 APPTFKVSL--MDQSVREGQDVIMSIRVQGEPKPVVSWLR-NRQPVRPDQRRFAEEAEGGLCRLRIL----AAERGDAGF   76 (99)
T ss_dssp             EEEEEEECC--CCEEEETTCCEEEEEEEEEESCCEEEEEE-TTEECCCBTTEEEEECGGGEEEEEES----SCCGGGCEE
T ss_pred             CCCEEEEcC--CceEecCCCEEEEEEEEEEcCCCEEEEEE-CCEECCCCCCEEEEECCCCEEEEEEc----cCCcCCCEE
Confidence            356666665  56788999999999999999999999999 555544321100   00   011111    244677888


Q ss_pred             EEeeecc
Q psy16421        121 LECISEA  127 (151)
Q Consensus       121 l~C~~~g  127 (151)
                      ..|.+..
T Consensus        77 Y~C~a~N   83 (99)
T 1u2h_A           77 YTCKAVN   83 (99)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9998864

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=98.17  E-value=2.6e-06  Score=47.33  Aligned_cols=35  Identities=11%  Similarity=0.245  Sum_probs=28.4

Q ss_pred             CceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      +....+..|+++.|+|.+.|.|.  |+|+|||..+..
T Consensus         6 p~~~v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l~~   40 (82)
T 3r08_E            6 IEYKVSISGTSVELTCPLDSDEN--LKWEKNGQELPQ   40 (82)
T ss_dssp             CCCEEEEETTEEEEECSSCCCSS--CEEEETTEECTT
T ss_pred             CceeEEEcCCeEEEEEECCCCCc--EEEEECCEECcC
Confidence            34455778999999999999984  999999877653

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=98.16  E-value=6.7e-06  Score=46.73  Aligned_cols=73  Identities=12%  Similarity=0.056  Sum_probs=49.5

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCC-----ceeEeecCCcEEE
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPS-----QLIGAHEGQQLVL  121 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~-----~~~~~~~g~~~~l  121 (151)
                      .+|.|...+  .++.+.+|+.+.|.|.+.+ +.+.+.|++ +++.+....+    -.+....     .-..+...+....
T Consensus         4 ~~~~~~~~~--~~~~v~~G~~v~l~C~v~~-~~~~v~W~k-~g~~i~~~~~----~~i~~~g~~~~L~I~~v~~~D~G~Y   75 (93)
T 1waa_A            4 ALIEVEKPL--YGVEVFVGETAHFEIELSE-PDVHGQWKL-KGQPLAASPD----CEIIEDGKKHILILHNCQLGMTGEV   75 (93)
T ss_dssp             CCCCEEECC--CCEEEETTSCEEEEEEESS-SSCCCEEEE-TTEECCCBTT----EEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CCcEeeccC--cceEEeCCCCEEEEEEECC-CCCeEEEEE-CCEECcCCCC----EEEEEECCEEEEEECCCChhhCEEE
Confidence            567777776  6789999999999999987 557899999 6766653221    1111111     1112456788889


Q ss_pred             Eeeecc
Q psy16421        122 ECISEA  127 (151)
Q Consensus       122 ~C~~~g  127 (151)
                      .|.+..
T Consensus        76 ~C~a~n   81 (93)
T 1waa_A           76 SFQAAN   81 (93)
T ss_dssp             EEEETT
T ss_pred             EEEECC
Confidence            998764

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=98.16  E-value=3.9e-06  Score=49.19  Aligned_cols=43  Identities=19%  Similarity=0.199  Sum_probs=35.8

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      .||.|...+....+.+|+++.|.|.+.+.  |.+.|+|++..+..
T Consensus        18 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~   60 (113)
T 2edh_A           18 LPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRD   60 (113)
T ss_dssp             SCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCC
T ss_pred             CCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCC
Confidence            45678777888889999999999999775  68999999876653

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.16  E-value=8.7e-07  Score=50.69  Aligned_cols=76  Identities=22%  Similarity=0.413  Sum_probs=50.2

Q ss_pred             cCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC--CCCeeeeCCceeEeecCCcEEEE
Q psy16421         45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT--VPPIVKIPSQLIGAHEGQQLVLE  122 (151)
Q Consensus        45 ~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~g~~~~l~  122 (151)
                      +..+|.+...+  ....+.+|+.+.|.|.+.|.|.|.+.|++ +++.+.......  ....+.+.    .+...+.....
T Consensus         8 ~~~~P~~~~~~--~~~~v~~G~~v~l~C~~~g~p~p~v~W~~-~g~~~~~~~~~~~~~~~~L~i~----~v~~~D~G~Y~   80 (99)
T 2yr3_A            8 MEVAPSFSSVL--KDCAVIEGQDFVLQCSVRGTPVPRITWLL-NGQPIQYARSTCEAGVAELHIQ----DALPEDHGTYT   80 (99)
T ss_dssp             CCEEEEEEECC--CCEEECTTCCEEEECEEEEESCCCCEEEE-SSSBCSSCCCEEETTEEEEEEC----SCCTTCCBCEE
T ss_pred             cccCCceeecC--CCCEEeCCCeEEEEEEEeeeCCCeEEEEE-CCEECcccceEeeCCeEEEEEC----CCChhhCEEEE
Confidence            34577777766  57889999999999999999999999999 555543211000  00111111    23456777888


Q ss_pred             eeecc
Q psy16421        123 CISEA  127 (151)
Q Consensus       123 C~~~g  127 (151)
                      |.+..
T Consensus        81 C~a~N   85 (99)
T 2yr3_A           81 CLAEN   85 (99)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            98754

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.15  E-value=5e-06  Score=56.07  Aligned_cols=29  Identities=21%  Similarity=0.515  Sum_probs=18.1

Q ss_pred             eecCCcEEEEeeeccc-CCC-eeEEEcCCce
Q psy16421        113 AHEGQQLVLECISEAY-PKS-VNYWTREKGD  141 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g~-p~~-~~~W~k~~~~  141 (151)
                      +.+|+.+.|.|.+.|. |.| .++|+|++..
T Consensus       145 ~~~g~~v~L~C~~~g~~P~pi~v~W~k~g~~  175 (257)
T 3bn9_D          145 STSGGTAALGCLVKDYFPEPVTVSWNSGALT  175 (257)
T ss_dssp             --------CCCEEEEEBSSCCEEEETTTTCC
T ss_pred             ccCCCcEEEEEEEeeEECCCcEEEEeeCCCc
Confidence            4578999999999985 877 7999998764

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=97.44  E-value=2.7e-07  Score=59.38  Aligned_cols=77  Identities=13%  Similarity=0.181  Sum_probs=45.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SPP   79 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~~   79 (151)
                      |.+++.+|+|.|.|.+.+... .......|+|....        ...+|.+....  .     ..+.+.|.|.+.| .|.
T Consensus        76 I~~v~~~DsG~Y~C~~~~~~~-~fg~gT~L~V~~~~--------~~~~P~V~~~~--~-----~~~~vtL~C~~~gf~P~  139 (185)
T 3c6l_A           76 IADSQPGDSATYFCAASDNRI-FFGDGTQLVVKPNI--------QNPEPAVYQLK--D-----PRSQDSTLCLFTDFDSQ  139 (185)
Confidence            678999999999999876211 11222345543110        00123333221  0     1127899999877 789


Q ss_pred             CeEEEEeCCeeeEec
Q psy16421         80 PSIMWRREGGEMITN   94 (151)
Q Consensus        80 ~~~~W~~~~~~~~~~   94 (151)
                      |.+.|.. +......
T Consensus       140 p~v~~~~-~~~~~~~  153 (185)
T 3c6l_A          140 INVPKTM-ESGTFIT  153 (185)
Confidence            9999987 5555443

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=98.15  E-value=2.8e-06  Score=51.20  Aligned_cols=32  Identities=9%  Similarity=0.099  Sum_probs=28.0

Q ss_pred             ecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        114 HEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       114 ~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      ..+..+.|.|.+.|+|.|.|+|+|||..+..+
T Consensus        13 ~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~   44 (126)
T 1he7_A           13 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNET   44 (126)
T ss_dssp             CCCCEEEEEEEECCSSCCEEEEEETTEECCCC
T ss_pred             ccCccEEEEEEEeeeCCCeEEEEECCEECCCC
Confidence            46789999999999999999999998777543

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.13  E-value=1.2e-05  Score=53.36  Aligned_cols=30  Identities=23%  Similarity=0.457  Sum_probs=24.9

Q ss_pred             CceEeecCCeEEEEeeecCC--CCCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASGS--PPPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~--~~~~~~W~~~   87 (151)
                      ..+.+.+|+++.|.|.+.+.  +.+.+.|++.
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~   40 (242)
T 1hxm_B            9 ISSTKTLSKTARLECVVSGITISATSVYWYRE   40 (242)
T ss_dssp             SEEEEETTCCEEEEEEEESSCTTTSCEEEEEE
T ss_pred             ceEEecCCCcEEEEEEeCCccccCceEEEEEe
Confidence            45778899999999998775  5678999984

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=98.11  E-value=3.8e-06  Score=47.79  Aligned_cols=74  Identities=19%  Similarity=0.320  Sum_probs=49.1

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCC-----ceeEeecCCcEEE
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPS-----QLIGAHEGQQLVL  121 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~-----~~~~~~~g~~~~l  121 (151)
                      .+|.+...+  ....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+....+    ..+....     ....+...+....
T Consensus         5 ~~P~i~~~~--~~~~v~~G~~~~l~C~~~g~p~p~v~W~~-~g~~~~~~~~----~~~~~~~~~~~L~i~~~~~~d~G~Y   77 (99)
T 3puc_A            5 SKPVIVTGL--QDTTVSSDSVAKFAVKATGEPRPTAIWTK-DGKAITQGGK----YKLSEDKGGFFLEIHKTDTSDSGLY   77 (99)
T ss_dssp             EEEEEEECC--CCEEEESSSCEEEEEEEEEESCCEEEEEE-TTEECCSSSS----EEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEecC--ccEEEeCCCcEEEEEEEEecCCCEEEEEE-CCEECcCCCC----EEEEEeCCEEEEEECCCCcccCEEE
Confidence            456666666  56788999999999999999999999999 5655543211    1111110     0112345778889


Q ss_pred             Eeeecc
Q psy16421        122 ECISEA  127 (151)
Q Consensus       122 ~C~~~g  127 (151)
                      .|.+..
T Consensus        78 ~C~a~n   83 (99)
T 3puc_A           78 TCTVKN   83 (99)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            998863

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.11  E-value=4.9e-06  Score=48.47  Aligned_cols=44  Identities=27%  Similarity=0.511  Sum_probs=36.7

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEe
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMIT   93 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~   93 (151)
                      .+|.+...+  ..+.+.+|+.+.|.|.+.|.|.+.+.|++ +++.+.
T Consensus         7 ~~P~~~~~~--~~~~v~~G~~v~l~C~~~g~p~p~v~W~k-~g~~~~   50 (110)
T 2dm2_A            7 GAPFFEMKL--KHYKIFEGMPVTFTCRVAGNPKPKIYWFK-DGKQIS   50 (110)
T ss_dssp             CCCCBSSCC--CCEEEETTCCEEEEEEBCCSSCCEEEEEC-SSCBCC
T ss_pred             CCCEEEecC--cCeEEeCCCeEEEEEEEEecCCCEEEEEE-CCEECC
Confidence            567777666  67889999999999999999999999999 565554

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.10  E-value=2.3e-06  Score=50.99  Aligned_cols=39  Identities=13%  Similarity=0.198  Sum_probs=33.6

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeeccc---CCCeeEEEcCC
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAY---PKSVNYWTREK  139 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~---p~~~~~W~k~~  139 (151)
                      .+.|...+..+.+.+|+++.|.|.+.|.   |.|.|+|+|++
T Consensus        12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk   53 (118)
T 2edn_A           12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGK   53 (118)
T ss_dssp             SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETT
T ss_pred             cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCC
Confidence            4567777888999999999999999875   78999999974

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=98.10  E-value=4.1e-05  Score=51.98  Aligned_cols=86  Identities=12%  Similarity=0.195  Sum_probs=54.5

Q ss_pred             CceEeecCCeEEEEeee-cCCC---CCeEEEEeCCeeeEecccC-----------------------------------C
Q psy16421         58 SDIMVREGSNVSMRCAA-SGSP---PPSIMWRREGGEMITNSFN-----------------------------------N   98 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~-~g~~---~~~~~W~~~~~~~~~~~~~-----------------------------------~   98 (151)
                      +...+..|+.+.|.|.+ .|.|   +..++|+| |+..+.....                                   .
T Consensus        10 ~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyK-DG~~IsGaT~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~VtVT~   88 (304)
T 3shs_A           10 NKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTK-DDQPHENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLME   88 (304)
T ss_dssp             SCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEE-TTEECSCCSSEEEESSCCGGGCEEEEEEEEETTTCCEEECCCEEEC
T ss_pred             CCccccCCCCEEEEEEecCCCCCCCCceEEEEE-CCccccCCcceEEeeeccccCCeEEEEEEEECCCCeeeeeeEEEec
Confidence            34456789999999996 4566   45899999 5554432111                                   0


Q ss_pred             CCCCeeeeC-CceeEeecCCcEEEEeee--cc-cC-----CCeeEEEcCCceecc
Q psy16421         99 TVPPIVKIP-SQLIGAHEGQQLVLECIS--EA-YP-----KSVNYWTREKGDMIA  144 (151)
Q Consensus        99 ~~~p~~~~~-~~~~~~~~g~~~~l~C~~--~g-~p-----~~~~~W~k~~~~~~~  144 (151)
                      ...+.+... +....+..|..+.|.+.+  .| .|     ...+.|+||+..+..
T Consensus        89 ~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg  143 (304)
T 3shs_A           89 EAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT  143 (304)
T ss_dssp             BCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES
T ss_pred             cCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC
Confidence            011122222 444555678899999987  54 44     357999999876644

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=98.10  E-value=4.5e-06  Score=48.18  Aligned_cols=41  Identities=15%  Similarity=0.150  Sum_probs=33.8

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCc
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKG  140 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~  140 (151)
                      .+|.+...+....+.+|+++.|.|.+.+.|.+.+.|+|++.
T Consensus         5 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~   45 (108)
T 3m45_A            5 GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQ   45 (108)
T ss_dssp             ---CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTC
T ss_pred             cCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCC
Confidence            35566666778889999999999999999999999999765

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=98.08  E-value=1.3e-06  Score=50.60  Aligned_cols=31  Identities=23%  Similarity=0.222  Sum_probs=24.8

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|+|.|.|..| .....+.|.|
T Consensus        66 I~~v~~~D~G~Y~C~A~N~~G-~~~~~~~l~V   96 (103)
T 1wwb_X           66 LDNPTHMNNGDYTLIAKNEYG-KDEKQISAHF   96 (103)
T ss_dssp             EESCCGGGCEEEEEEEECSSC-EEEEEEEECC
T ss_pred             ECCCCcccCEEEEEEEEeCCC-cEeEEEEEEE
Confidence            467899999999999999998 4555555544

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=98.07  E-value=2.7e-06  Score=48.52  Aligned_cols=31  Identities=26%  Similarity=0.381  Sum_probs=25.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|+|.+.|..| .....+.|.|
T Consensus        66 i~~v~~~D~G~Y~C~a~n~~g-~~~~~~~l~V   96 (98)
T 1gl4_B           66 IRNVQPSDAGTYVCTGSNMFA-MDQGTATLHV   96 (98)
T ss_dssp             ECSCCGGGCEEEEEEEECSSC-EEEEEEEEEE
T ss_pred             EeCCChhhCEEEEEEecCCCC-ccccEEEEEE
Confidence            578999999999999999988 4555566555

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.07  E-value=9.4e-06  Score=46.07  Aligned_cols=70  Identities=20%  Similarity=0.448  Sum_probs=49.3

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeec
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISE  126 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~  126 (151)
                      .+|.+...+  ....+.+|+.+.|.|.+.+.|.+.+.|++ +++.+...    ....+.+.    .+...+.....|.+.
T Consensus         9 ~~~~i~~~p--~~~~v~~G~~v~l~C~~~g~p~~~v~W~k-~~~~~~~~----~~~~L~i~----~v~~~d~G~Y~C~a~   77 (96)
T 2ens_A            9 EEVQLVVEP--EGGAVAPGGTVTLTCEVPAQPSPQIHWMK-DGVPLPLP----PSPVLILP----EIGPQDQGTYSCVAT   77 (96)
T ss_dssp             CSCCCEEES--TTSEECTTCEEEEECCCSSCSSCCCCCEE-SSSBCSSC----CCSEEEEE----SCCTTTCEEEECEEC
T ss_pred             CCCEEEECC--CCCEEcCCCeEEEEEEEccCCCCEEEEEE-CCEECcCC----CCCEEEEC----CCCcccCEEEEEEEE
Confidence            456666655  46778899999999999999999999999 56554321    11223322    245678888999986


Q ss_pred             c
Q psy16421        127 A  127 (151)
Q Consensus       127 g  127 (151)
                      .
T Consensus        78 n   78 (96)
T 2ens_A           78 H   78 (96)
T ss_dssp             C
T ss_pred             e
Confidence            5

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=98.06  E-value=7.7e-05  Score=48.31  Aligned_cols=84  Identities=14%  Similarity=0.160  Sum_probs=50.9

Q ss_pred             CceEeecCCeEEEEeeecCCCCC-eEEEEeCCee-eEecc------------c----C------------------CCCC
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPP-SIMWRREGGE-MITNS------------F----N------------------NTVP  101 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~-~~~W~~~~~~-~~~~~------------~----~------------------~~~~  101 (151)
                      ....+.+|+++.|.|.+.. +.+ .+.|.-.-++ .....            .    .                  ++.+
T Consensus        10 ~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~g~~~~~~~ls~vs~d~~~~~C~~~c~~~~~~~~v~l~Vy~~   88 (196)
T 3bn3_B           10 RVAFVERGGSLWLNCSTNC-PRPERGGLETSLRRNGTQRGLRWLARQLVDIREPETQPVCFFRCARRTLQARGLIRTFQR   88 (196)
T ss_dssp             SEEEEETTEEEEEEEEECC-SSCSEEEEECSSEEEEEEEETTEEEEEEEEECSSEECCEEEEEETTEEEEEECEEEEEBC
T ss_pred             CCcEEcCCCeEEEEEeCCC-CCCCccEEEEccCCeeEccccCceEEEEEEEccCCCceEEEEECCCCceEEEEEEEEecC
Confidence            3466889999999999865 444 5666321111 11110            0    0                  1222


Q ss_pred             C-eeeeCCceeEeecCCcEEEEeeecc-cCCCe--eEEEcCCcee
Q psy16421        102 P-IVKIPSQLIGAHEGQQLVLECISEA-YPKSV--NYWTREKGDM  142 (151)
Q Consensus       102 p-~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~--~~W~k~~~~~  142 (151)
                      | ...+.+....+.+|+.++|.|.+.| .|...  |.|+|++..+
T Consensus        89 P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l  133 (196)
T 3bn3_B           89 PDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQEL  133 (196)
T ss_dssp             CCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEE
T ss_pred             CCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEe
Confidence            2 2333333233789999999999987 55544  8999987655

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=98.06  E-value=5.1e-06  Score=51.55  Aligned_cols=78  Identities=19%  Similarity=0.302  Sum_probs=52.5

Q ss_pred             eecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC------CCCeeeeCCceeEeecC
Q psy16421         43 YTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT------VPPIVKIPSQLIGAHEG  116 (151)
Q Consensus        43 ~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~------~~p~~~~~~~~~~~~~g  116 (151)
                      +.+..+|.+...+  ..+.+.+|+.+.|.|.+.|.|.|.+.|++ +++.+....+..      ....+.+.    .+...
T Consensus        36 ~~v~~~P~~~~~~--~~~~v~~G~~v~L~C~~~g~P~p~v~W~k-~g~~~~~~~~~~~~~~~~~~~~L~I~----~v~~~  108 (154)
T 1fhg_A           36 EKPHVKPYFTKTI--LDMEVVEGSAARFDCKVEGYPDPEVMWFK-DDNPVKESRHFQIDYDEEGNCSLTIS----EVCGD  108 (154)
T ss_dssp             CCCCEEEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCSSSEEEEECTTCEEEEEES----SCCGG
T ss_pred             ccCCCCCeEEccC--CcEEEeCCCeEEEEEEEEEecCCEEEEEE-CCEECCCCCcEEEEECCCCeEEEEEC----CCChh
Confidence            3445678888776  56889999999999999999999999999 565554322100      00011111    24456


Q ss_pred             CcEEEEeeecc
Q psy16421        117 QQLVLECISEA  127 (151)
Q Consensus       117 ~~~~l~C~~~g  127 (151)
                      +.....|.+..
T Consensus       109 D~G~Y~C~a~N  119 (154)
T 1fhg_A          109 DDAKYTCKAVN  119 (154)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCEEEEEEEEE
Confidence            77888998753

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.05  E-value=6.2e-06  Score=48.22  Aligned_cols=33  Identities=21%  Similarity=0.416  Sum_probs=28.3

Q ss_pred             eEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        111 IGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ..+.+|+++.|.|.+. .|.+.+.|+|+|..+..
T Consensus        23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~   55 (113)
T 2cpc_A           23 VAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVE   55 (113)
T ss_dssp             EEEETTCCEEEEEEES-CTTCCCEEEETTEECCC
T ss_pred             EEEEcCCeEEEEEEec-CCCCeEEEEECCEECcc
Confidence            5788999999999995 78899999999876643

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.02  E-value=7.3e-06  Score=48.36  Aligned_cols=44  Identities=34%  Similarity=0.736  Sum_probs=36.5

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEe
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMIT   93 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~   93 (151)
                      .+|.+...+  ..+.+.+|+.+.|.|.+.|.|.+.+.|++ +++.+.
T Consensus         7 ~pP~i~~~p--~~~~v~~G~~v~l~C~~~g~p~p~i~W~k-~g~~~~   50 (118)
T 2eo9_A            7 GPPVIRQGP--VNQTVAVDGTFVLSCVATGSPVPTILWRK-DGVLVS   50 (118)
T ss_dssp             CSCCCSBCC--CCEEEETTCEEEEECBCCCSSCCEEEEEE-SSSBCC
T ss_pred             CCCEEEcCC--CCEEEcCCCeEEEEEEEEecCCCEEEEEE-CCEECc
Confidence            567776666  57889999999999999999999999999 565544

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.02  E-value=2.9e-05  Score=51.43  Aligned_cols=74  Identities=16%  Similarity=0.234  Sum_probs=42.9

Q ss_pred             CccccccCCeEEEEEEEcCCC-----CC--CccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEee
Q psy16421          1 MTEVSREHMGAYLCIASNGVP-----PS--VSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCA   73 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~-----~~--~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~   73 (151)
                      |.+++.+|+|.|.|.+.+..+     ..  ......|.|....       ....+|.+..         .. ....|.|.
T Consensus        79 I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~-------~~~~~P~v~~---------~~-~~~~L~C~  141 (229)
T 1hxm_A           79 ILAPSERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRS-------QPHTKPSVFV---------MK-NGTNVACL  141 (229)
T ss_dssp             ESSCCGGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCS-------CCCBCCEEEE---------EE-ETTEEEEE
T ss_pred             ECcCCHhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccC-------CCCcCCcEEE---------cC-CCCeEEEE
Confidence            678999999999999987631     01  1123455554100       0012333322         11 12489999


Q ss_pred             ecCC-CCC-eEEEEeCCeeeEe
Q psy16421         74 ASGS-PPP-SIMWRREGGEMIT   93 (151)
Q Consensus        74 ~~g~-~~~-~~~W~~~~~~~~~   93 (151)
                      +.+. |.+ .+.|++ + +.+.
T Consensus       142 ~~g~~P~~i~v~W~~-~-~~~~  161 (229)
T 1hxm_A          142 VKEFYPKDIRINLVS-S-KKIT  161 (229)
T ss_dssp             EESCBSSCCEEEEEC-S-SEEE
T ss_pred             EEEEeCCCEEEEEec-C-CEEe
Confidence            9874 543 899999 4 5544

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.01  E-value=1.4e-05  Score=47.18  Aligned_cols=44  Identities=16%  Similarity=0.195  Sum_probs=36.2

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecc
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS   95 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~   95 (151)
                      .+|.|...+  .+..+.+|+.+.|.|.+.+  .+.+.|++ |++++...
T Consensus         7 p~~~~~~~l--~d~~v~eG~~a~f~C~vs~--~p~v~W~k-nG~~l~~~   50 (112)
T 2e6q_A            7 GTARLVAGL--EDVQVYDGEDAVFSLDLST--IIQGTWFL-NGEELKSN   50 (112)
T ss_dssp             SCCCEEECC--CCEEEETTCEEEEEEEESS--CCCCEEEE-SSCBCCSS
T ss_pred             CCcEEecCC--CCeEEcCCCcEEEEEEECC--CCeEEEEE-CCEECccC
Confidence            456777776  7899999999999999987  77899999 67777643

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.01  E-value=5.2e-05  Score=52.10  Aligned_cols=85  Identities=19%  Similarity=0.274  Sum_probs=51.1

Q ss_pred             CceEeecCCeEEEEeeecCCCCCe-EEEEeCCe-eeE------------eccc--C--------------------CCCC
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPS-IMWRREGG-EMI------------TNSF--N--------------------NTVP  101 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~-~~W~~~~~-~~~------------~~~~--~--------------------~~~~  101 (151)
                      ....+.+|+++.|.|.+.. +.|. +.|.-... ..+            ....  .                    +..+
T Consensus         7 ~~~~V~~G~sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~g~~~~~~~l~~v~~~~~y~C~~~~~~~~~~~~v~l~V~~~   85 (291)
T 1mq8_A            7 SKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWT   85 (291)
T ss_dssp             SEEEECTTCEEEEEEEECC-SSCSEEEEECSSCCCCCCCSCSSEEEEEEESCCSCCCCEEEEECSSCEEEEECEEEECBC
T ss_pred             CccEEcCCCeEEEEEeCCC-CCCccceEEecCCCcccccCCCceEEEEEEecccCCeEEEEEEcCCccEEEEEEEEEecC
Confidence            3567889999999999864 5444 78852111 111            0000  0                    1222


Q ss_pred             C-eeeeCCceeEeecCCcEEEEeeeccc-CCC--eeEEEcCCceec
Q psy16421        102 P-IVKIPSQLIGAHEGQQLVLECISEAY-PKS--VNYWTREKGDMI  143 (151)
Q Consensus       102 p-~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~--~~~W~k~~~~~~  143 (151)
                      | .+.+......+.+|+.+.|.|.+.|. |..  .|+|+|++..+.
T Consensus        86 P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~  131 (291)
T 1mq8_A           86 PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELK  131 (291)
T ss_dssp             CSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEE
T ss_pred             CCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEee
Confidence            2 22222222347889999999999874 443  489999986553

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=98.00  E-value=1e-05  Score=46.02  Aligned_cols=41  Identities=20%  Similarity=0.425  Sum_probs=32.3

Q ss_pred             CCeeeeC-CceeEeecCCcEEEEeeec-ccCCCeeEEEcCCce
Q psy16421        101 PPIVKIP-SQLIGAHEGQQLVLECISE-AYPKSVNYWTREKGD  141 (151)
Q Consensus       101 ~p~~~~~-~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~k~~~~  141 (151)
                      ++.+... +....+.+|+++.|.|.+. |.|.+.+.|+|++..
T Consensus         9 ~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~   51 (98)
T 1gl4_B            9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNG   51 (98)
T ss_dssp             CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGB
T ss_pred             CcEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCC
Confidence            3444443 5667899999999999998 689999999997543

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=98.00  E-value=7.3e-06  Score=55.43  Aligned_cols=72  Identities=15%  Similarity=0.411  Sum_probs=43.1

Q ss_pred             CccccccCCeEEEEEEEc-------CCC-------------CC----CccceEEEEeccccceeEEeecCCCCeeEe-CC
Q psy16421          1 MTEVSREHMGAYLCIASN-------GVP-------------PS----VSKRIMLIVQCQYFSKLYIYTSSMPPDILD-YP   55 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~-------~~~-------------~~----~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~-~~   55 (151)
                      |.+++.+|+|.|.|.+.+       ..+             ..    ......|.|..         ....+|.+.. .+
T Consensus       106 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~---------~~~~~P~v~~~~~  176 (267)
T 3u1s_H          106 LRGLTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSS---------ASTKGPSVFPLAP  176 (267)
T ss_dssp             ECSCCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECC---------CCCBCCEEEEECC
T ss_pred             ECCCChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecC---------CCCCCCEEEEecC
Confidence            678999999999999862       100             00    11223444431         1123455542 32


Q ss_pred             CCCceEeecCCeEEEEeeecC-CC-CCeEEE
Q psy16421         56 TSSDIMVREGSNVSMRCAASG-SP-PPSIMW   84 (151)
Q Consensus        56 ~~~~~~~~~g~~~~l~C~~~g-~~-~~~~~W   84 (151)
                         .....+|+.+.|.|.+.+ .| .+.+.|
T Consensus       177 ---~~~~~~g~~~~l~C~~~~~~p~~~~v~W  204 (267)
T 3u1s_H          177 ---SSKSTSGGTAALGCLVKDYFPEPVTVSW  204 (267)
T ss_dssp             ---CGGGEETTEEEEEEEEEEEBSSCCEEEE
T ss_pred             ---CcccCCCCcEEEEEEEeEEECCCeEEEE
Confidence               122357899999999876 45 567899

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=97.99  E-value=6.9e-05  Score=50.88  Aligned_cols=29  Identities=28%  Similarity=0.522  Sum_probs=24.1

Q ss_pred             CceEeecCCeEEEEeeecCC--CCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGS--PPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~--~~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|.+.+.  +.+.+.|++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r   38 (280)
T 3fku_X            8 GAEVKKPGSSVKVSCTSSEVTFSSFAISWVR   38 (280)
T ss_dssp             CCCEECTTCCEEEEEEECCSCCTTSCEEECC
T ss_pred             CCEEECCCCcEEEEEEeeccCCCCeEEEEEE
Confidence            45778899999999998774  567899987

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=97.99  E-value=3.5e-05  Score=57.42  Aligned_cols=30  Identities=13%  Similarity=0.374  Sum_probs=24.4

Q ss_pred             eecCCcEEEEeeecc-cCC-CeeEEEcCCcee
Q psy16421        113 AHEGQQLVLECISEA-YPK-SVNYWTREKGDM  142 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g-~p~-~~~~W~k~~~~~  142 (151)
                      ...|+.+.|.|.+.| +|. ..|+|+|||..+
T Consensus       461 ~~~~~~~~L~C~v~gfyP~~i~v~W~k~g~~~  492 (551)
T 1ntl_A          461 QMAKDKVSLTCMITDFFPEDITVEWQWNGQPA  492 (551)
T ss_pred             hccCCceEEEEEEEEeECCCCEEEEEECCEEc
Confidence            456899999999999 565 359999998765

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=97.98  E-value=5.7e-06  Score=49.42  Aligned_cols=31  Identities=23%  Similarity=0.465  Sum_probs=25.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |.+++.+|+|.|+|.+.|. + .....+.|.|.
T Consensus        70 I~~v~~~DsG~Y~C~a~n~-g-~~~~~~~l~V~  100 (124)
T 3rbg_A           70 VPNVTLQDEGVYKCLHYSD-S-VSTKEVKVIVL  100 (124)
T ss_dssp             ESSCCGGGCEEEEEEEESS-S-EEEEEEEEEEE
T ss_pred             ECCCChHHCEEEEEEEEcC-C-CCcEEEEEEEE
Confidence            5789999999999999998 5 55666666664

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=97.98  E-value=2.4e-05  Score=50.76  Aligned_cols=104  Identities=20%  Similarity=0.315  Sum_probs=56.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeee----cC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA----SG   76 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~----~g   76 (151)
                      |.+++.+|+|.|+|.|.|..| .....+.|.|.             .+|......    .....+.++.+.|..    .+
T Consensus        80 i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~v~-------------~~P~~p~~~----~~~~~~~~~~l~w~~p~~~~~  141 (215)
T 3mtr_A           80 VTPDSENDFGNYNCTAVNRIG-QESLEFILVQA-------------DTPSSPSID----QVEPYSSTAQVQFDEPEATGG  141 (215)
T ss_dssp             ECCCSGGGCEEEEEEEECSSC-EEEEEEEEEEC-------------CCCCCCEEE----EEEEETTEEEEEEECCSCCCS
T ss_pred             EecCChhhCeEEEEEEEECCC-ceEEEEEEEEC-------------CCCCCCcce----EEEEecceEEEEEecCCccCC
Confidence            568899999999999999998 44555565553             223221111    112346778888863    22


Q ss_pred             CCCC--eEEEEeCCeeeEeccc-CC---CCCCeeeeCCceeEeecCCcEEEEeeec
Q psy16421         77 SPPP--SIMWRREGGEMITNSF-NN---TVPPIVKIPSQLIGAHEGQQLVLECISE  126 (151)
Q Consensus        77 ~~~~--~~~W~~~~~~~~~~~~-~~---~~~p~~~~~~~~~~~~~g~~~~l~C~~~  126 (151)
                      .|..  .+.|.+.+........ ..   .....+.+    ..+..++...+.|.+.
T Consensus       142 ~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i----~~L~~~~~y~~~~~A~  193 (215)
T 3mtr_A          142 VPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTI----VGLKPETTYAVRLAAL  193 (215)
T ss_dssp             SCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEE----ECCCTTCEEEEEEEEE
T ss_pred             CceEEEEEEEEECCCCcccccccccccccccccEEE----CCCCCCCEEEEEEEEE
Confidence            3332  3667773321110000 00   00012222    2356788899999975

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.97  E-value=3.9e-06  Score=59.21  Aligned_cols=32  Identities=19%  Similarity=0.394  Sum_probs=27.9

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCee
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGE   90 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~   90 (151)
                      ..+.+.+|+++.|.|.+.| |.|.+.|++.++.
T Consensus       254 ~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~  285 (361)
T 2xot_A          254 SAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNE  285 (361)
T ss_dssp             CCCEEETTCCEEECCCCSS-TTCEEEEECTTSC
T ss_pred             cCceecCCCeEEEEeEeeC-CCCeEEEEeCCCe
Confidence            5678899999999999999 9999999995543

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.96  E-value=8.5e-06  Score=48.09  Aligned_cols=76  Identities=18%  Similarity=0.301  Sum_probs=49.1

Q ss_pred             CCCCeeEeCC-CCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCc-----eeEeecCCcE
Q psy16421         46 SMPPDILDYP-TSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQ-----LIGAHEGQQL  119 (151)
Q Consensus        46 ~~~p~~~~~~-~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~~~~g~~~  119 (151)
                      ..+|.+.... ....+.+.+|+.+.|.|.+.|.|.|.+.|++ +++.+....     ..+.....     ...+...+..
T Consensus        19 ~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~g~~l~~~~-----~~~~~~~~~~~L~i~~~~~~D~G   92 (118)
T 2e7c_A           19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK-GGAPLDTSR-----VHVRTSDFDTVFFVRQAARSDSG   92 (118)
T ss_dssp             SEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEE-TTEECCCSS-----CEEEECSSEEEEEESSCCTTTCE
T ss_pred             ccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEE-CCEECCCCc-----EEEEECCCeEEEEECCCChhcCE
Confidence            3466664421 1256788899999999999999999999999 566554111     11111111     1124567888


Q ss_pred             EEEeeecc
Q psy16421        120 VLECISEA  127 (151)
Q Consensus       120 ~l~C~~~g  127 (151)
                      ...|.+..
T Consensus        93 ~Y~C~a~N  100 (118)
T 2e7c_A           93 EYELSVQI  100 (118)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEe
Confidence            99998754

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.96  E-value=9.8e-06  Score=46.62  Aligned_cols=73  Identities=19%  Similarity=0.191  Sum_probs=48.9

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC-----CCCeeeeCCceeEeecCCcEEE
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT-----VPPIVKIPSQLIGAHEGQQLVL  121 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~-----~~p~~~~~~~~~~~~~g~~~~l  121 (151)
                      .+|.|...+  .++.+.+|+++.|.|.+  .|.+.+.|++ +++.+....+..     ....+.+.    .+...+....
T Consensus         6 ~p~~~~~~~--~~~~v~~G~~v~l~C~v--~p~p~v~W~k-~g~~l~~~~r~~i~~~~~~~~L~I~----~v~~~D~G~Y   76 (100)
T 2yuz_A            6 SGLKILTPL--TDQTVNLGKEICLKCEI--SENIPGKWTK-NGLPVQESDRLKVVQKGRIHKLVIA----NALTEDEGDY   76 (100)
T ss_dssp             CCCCCSBCC--CCEEEETTSCCCEEEEC--SSCCCEEEEE-TTEECCCCSSEEEEECSSEEEEEES----SCCGGGCSEE
T ss_pred             CCCEEeccC--CceEEcCCCCEEEEEEe--CCCCeEEEEE-CCEECCCCCcEEEEEeCCEEEEEEC----CCChhhCEEE
Confidence            466776666  67899999999999999  7889999999 666665322100     00011111    2345777888


Q ss_pred             Eeeeccc
Q psy16421        122 ECISEAY  128 (151)
Q Consensus       122 ~C~~~g~  128 (151)
                      .|.+...
T Consensus        77 ~C~a~N~   83 (100)
T 2yuz_A           77 VFAPDAY   83 (100)
T ss_dssp             EEEESSS
T ss_pred             EEEEcCC
Confidence            8988765

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.96  E-value=5.1e-06  Score=47.57  Aligned_cols=36  Identities=19%  Similarity=0.279  Sum_probs=29.8

Q ss_pred             CceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      +....+.+|+.+.|.|.+.|.| |.+.|+|++..+..
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~   45 (99)
T 2cr3_A           10 VESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAE   45 (99)
T ss_dssp             EEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCC
T ss_pred             CcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCC
Confidence            4455688999999999999987 79999999866644

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.95  E-value=5.8e-06  Score=48.05  Aligned_cols=44  Identities=34%  Similarity=0.760  Sum_probs=37.0

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEe
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMIT   93 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~   93 (151)
                      .+|.+...+  ..+.+.+|+.+.|.|.+.+.|.+.+.|++ +++.+.
T Consensus         8 ~~P~i~~~~--~~~~v~~G~~v~l~C~~~g~p~p~v~W~~-~g~~~~   51 (110)
T 2dm3_A            8 FRPHFLQAP--GDLTVQEGKLCRMDCKVSGLPTPDLSWQL-DGKPVR   51 (110)
T ss_dssp             CCCEEEECC--CEEEEESSSCBCCEEEEECSSCCEEECBB-SSSBCC
T ss_pred             CCCcEEeCC--CcEEEeCCCEEEEEEEEEEcCCCEEEEEE-CCEECC
Confidence            578887776  67889999999999999999999999999 555544

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=97.95  E-value=6.3e-06  Score=46.70  Aligned_cols=32  Identities=25%  Similarity=0.353  Sum_probs=25.6

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |.+++.+|+|.|+|.|.|..| .....+.|.|.
T Consensus        55 i~~~~~~D~G~Y~C~a~n~~g-~~~~~~~l~V~   86 (95)
T 4hwu_A           55 IKGATPRDSGLYACTAARTVD-SETWIFMVNVT   86 (95)
T ss_dssp             ECSCCGGGCEEEEEEEECSSC-EEEEEEEEEEC
T ss_pred             ECcCCcccCEEEEEEEccCCC-cEEEEEEEEEe
Confidence            568899999999999999988 55556666653

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=97.95  E-value=1.6e-05  Score=46.20  Aligned_cols=38  Identities=18%  Similarity=0.344  Sum_probs=31.3

Q ss_pred             CCeeEeCCCCCceEeecCCeEEEEeeecCCCC---CeEEEEeC
Q psy16421         48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPP---PSIMWRRE   87 (151)
Q Consensus        48 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~---~~~~W~~~   87 (151)
                      .|.|...+  ..+.+.+|+++.|.|.+.|.|.   |.+.|++.
T Consensus         4 ~p~f~~~p--~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~   44 (108)
T 3cx2_A            4 IGLFVMRP--QDGEVTVGGSITFSARVAGASLLKPPVVKWFKG   44 (108)
T ss_dssp             CCSCSBCC--CCEEEETTCCEEEEEEEECC-CCSCCEEEEEET
T ss_pred             ccEEEeCC--CcEEEeCCCCEEEEEEECCCccCCCcEEEEccC
Confidence            45666665  6788999999999999999888   99999994

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=97.94  E-value=1.9e-05  Score=47.80  Aligned_cols=42  Identities=31%  Similarity=0.541  Sum_probs=35.7

Q ss_pred             CCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCee
Q psy16421         46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGE   90 (151)
Q Consensus        46 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~   90 (151)
                      ..+|.+...+  ..+.+.+|+++.|.|.+.|.|.|.+.|++ ++.
T Consensus        19 ~~pP~~~~~p--~~~~v~~G~~v~L~C~~~g~P~p~i~W~k-~~~   60 (137)
T 3qr2_A           19 SHMAGFVQAP--LSQQRWVGGSVELHCEAVGSPVPEIQWWF-EGQ   60 (137)
T ss_dssp             --CCEEEECC--CCEEEETTSCEEEEEEEECSSCCEEEEEE-EES
T ss_pred             CCCCeEEcCC--CCEEEeCCCCEEEEEEEeeecCCeEEEEE-CCC
Confidence            4688998877  67889999999999999999999999999 444

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=97.94  E-value=7.8e-05  Score=49.41  Aligned_cols=28  Identities=21%  Similarity=0.541  Sum_probs=21.3

Q ss_pred             eecCCcEEEEeeecc-cCCCe-eEEEcCCc
Q psy16421        113 AHEGQQLVLECISEA-YPKSV-NYWTREKG  140 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g-~p~~~-~~W~k~~~  140 (151)
                      +..|+.+.|.|.+.+ .|.+. ++|+++|.
T Consensus       152 ~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~  181 (239)
T 3tv3_H          152 STSGGTAALGCLVKDYFPEPVTVSWNSGAL  181 (239)
T ss_dssp             C--TTEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             hccCCcEEEEEEEeeEeCCCeEEEEEECCc
Confidence            456899999999998 55554 89999875

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.92  E-value=8.7e-06  Score=46.69  Aligned_cols=35  Identities=14%  Similarity=0.332  Sum_probs=29.9

Q ss_pred             ceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        109 QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ....+.+|+++.|.|.+. .|.+.+.|+|+|..+..
T Consensus        19 ~~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~   53 (102)
T 2eo1_A           19 REVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSS   53 (102)
T ss_dssp             EEEEEETTCCEEECCBCS-CSSSCCEEEETTEECCC
T ss_pred             ccEEEeCCCcEEEEEEec-CCCCceEEEECCEECCC
Confidence            455789999999999998 88899999999876644

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=97.92  E-value=3.6e-05  Score=43.58  Aligned_cols=65  Identities=14%  Similarity=0.180  Sum_probs=43.2

Q ss_pred             CceEeecCCeEEEEeeecCC-CCCeEEEEeCCeeeEecccCCCCCCeeeeCCc-----eeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAASGS-PPPSIMWRREGGEMITNSFNNTVPPIVKIPSQ-----LIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~-~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~~~~g~~~~l~C~~~g  127 (151)
                      ..+.+.+|+.+.|.|.+.|. |.+.+.|++ +++.+.....    -.+.....     ...+...+.....|.+..
T Consensus         9 ~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~-~~~~~~~~~~----~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (97)
T 2bk8_A            9 MHAVGEEGGHVKYVCKIENYDQSTQVTWYF-GVRQLENSEK----YEITYEDGVAILYVKDITKLDDGTYRCKVVN   79 (97)
T ss_dssp             CCEEECTTCCEEEEEEEESCCTTCEEEEEE-TTEECCSSSS----EEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             cCEEEcCCCcEEEEEEEeccCCCCEEEEEE-CCEECcCCCC----EEEEEcCCeEEEEEecCChhhCeEEEEEEEC
Confidence            56788899999999999997 899999999 5555442211    11111111     112446778889998864

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=97.90  E-value=1.7e-05  Score=45.52  Aligned_cols=43  Identities=26%  Similarity=0.543  Sum_probs=34.4

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEe
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMIT   93 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~   93 (151)
                      .+|.+...+  ..+.+.+|+++.|.|.+.+.+.+ +.|++ +++.+.
T Consensus         7 ~pp~~~~~~--~~~~v~~G~~v~l~C~~~~~p~~-v~W~k-~~~~l~   49 (103)
T 2e7b_A            7 GPVRFQEAL--KDLEVLEGGAATLRCVLSSVAAP-VKWCY-GNNVLR   49 (103)
T ss_dssp             CCCCCTBCC--CCEEEESSSCEEEEEECSSCCCS-CEEEE-SSSBCC
T ss_pred             CCCEEEecC--ccEEEECCCcEEEEEEEeCCCCC-eEEEE-CCEECC
Confidence            466666555  57889999999999999998888 99999 555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	151
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-08
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-06
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	4e-06
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	5e-06
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	5e-06
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	3e-04
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	6e-06
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	1e-05
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-05
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-05
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	4e-05
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	5e-05
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	6e-05
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	9e-05
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-04
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-04
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	2e-04
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	3e-04
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	5e-04
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	5e-04
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	7e-04
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	0.001
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	0.001
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	0.002
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	0.002
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	0.004

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.6 bits (112), Expect = 2e-08
 Identities = 11/52 (21%), Positives = 25/52 (48%)

Query: 47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN 98
          +PP +    +  +     G +V++ C A G P P++ W ++G  +     ++
Sbjct: 2  VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDD 53

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-06
 Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 1/91 (1%)

Query: 45  SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIV 104
           S   P IL     ++     G +V   C       P I W +   +  +    + +P + 
Sbjct: 1   SRHRP-ILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLK 59

Query: 105 KIPSQLIGAHEGQQLVLECISEAYPKSVNYW 135
            + +  +   + +  VL   +  +  +  Y 
Sbjct: 60  VLKAAGVNTTDKEIEVLYIRNVTFEDAGEYT 90

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 4e-06
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF 96
          P I+ +P   D  VR G +V +    +G+ P +  W +   ++  +  
Sbjct: 1  PQIIQFP--EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEH 46

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 5e-06
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
          V   + V  RC A G+P P++ W + G E     
Sbjct: 17 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH 50

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 40.5 bits (94), Expect = 5e-06
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF 96
           P     P    I+V++G +V++ C  +G P P+++W      +     
Sbjct: 2  APKYEQKP-EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRA 49

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.5 bits (81), Expect = 3e-04
 Identities = 8/44 (18%), Positives = 17/44 (38%)

Query: 99  TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM 142
           + P   + P ++I   +GQ + + C     P     W+     +
Sbjct: 1   SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL 44

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 6e-06
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEM 91
           P + +     +    E S  +  C A G+P P +   ++G   
Sbjct: 2  GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 45

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.9 bits (92), Expect = 1e-05
 Identities = 10/72 (13%), Positives = 22/72 (30%)

Query: 56  TSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHE 115
            S D+M + G    + C    +P     + + G ++  N  +           +L+    
Sbjct: 9   VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTT 68

Query: 116 GQQLVLECISEA 127
             +       E 
Sbjct: 69  LPEDEGVYTCEV 80

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 2e-05
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 48 PPDI-LDYP--TSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
          PP I LD P      I+V  G+ + +    SG P P+++W++   +     
Sbjct: 4  PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAP 54

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.7 bits (89), Expect = 2e-05
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 58  SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV 100
           +    +EG +  + C    S PP+I+W+ +G ++I       +
Sbjct: 9   TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI 51

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.3 bits (88), Expect = 4e-05
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWR 85
           P I      +D     G  V++ C A G+P P I WR
Sbjct: 4  APSI-KAKFPADTYALTGQMVTLECFAFGNPVPQIKWR 40

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.5 bits (86), Expect = 5e-05
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 49  PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIP 107
           PD LD    +D     GS++   C ASG P P++ W R+G  + + +        ++  
Sbjct: 2   PDWLDVI--TDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFS 58

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 6e-05
 Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 2/37 (5%)

Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMW 84
           P I +        V +GS+   R    G P P   W
Sbjct: 4  APKIFERI--QSQTVGQGSDAHFRVRVVGKPDPECEW 38

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 9e-05
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 51 ILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN 98
          IL  P    + V EG +    C   G P P++ W R+G  + T++ + 
Sbjct: 2  ILTKP--RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQ 47

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 2e-04
 Identities = 9/41 (21%), Positives = 16/41 (39%)

Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN 98
            + V +G  V + C+  G   P I W ++G  +       
Sbjct: 4  VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLY 44

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 3e-04
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 1  MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
          +  V R   G Y C   +G    +S+ + L V+
Sbjct: 58 LKSVERSDAGRYWCQVEDGGETEISQPVWLTVE 90

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.0 bits (82), Expect = 2e-04
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 46 SMPPDILDYPTSSDIMVREGS---NVSMRCAASGSPPPSIMWRREGGEMITNS 95
          S  P   + P  +  +  EGS    V++ C A  +PP +  W+  G E+    
Sbjct: 2  SYGPVFEEQP--AHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGP 52

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.7 bits (81), Expect = 3e-04
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMW 84
          + P IL       I ++ G   ++     G+P P+  W
Sbjct: 1  LKPKILTAS--RKIKIKAGFTHNLEVDFIGAPDPTATW 36

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 35.3 bits (80), Expect = 5e-04
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEM 91
           + P         D+ V EGS     C   G P P +MW ++   +
Sbjct: 6  HVKPYFTKTI--LDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPV 49

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.3 bits (80), Expect = 5e-04
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMW 84
          P  +  P      V EG + +  C    S PP + W
Sbjct: 2  PRFIVKP--YGTEVGEGQSANFYCRVIASSPPVVTW 35

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 7e-04
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 48 PPDILDYPTSSDIMVREGSNVSMRC-AASGSPPPSIMWRREGGEMITNS 95
          PP        S      G+   + C    GSPP    W ++G  M TN 
Sbjct: 2  PPSKPTVNIPSS--ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNP 48

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 0.001
 Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 2/62 (3%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIP 107
           PP +      S   + EG    + C +   PP +     +  +    +  N       + 
Sbjct: 2   PPRVKAVK--SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVS 59

Query: 108 SQ 109
           S 
Sbjct: 60  SS 61

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.001
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITN 94
          P I+  P +  + V  GS + + C  +G       W+  G  +  +
Sbjct: 2  PVIV-SPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDED 46

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 33.7 bits (76), Expect = 0.002
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 1  MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
          + + +  H G Y C  + G     SK + + VQ
Sbjct: 53 IPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQ 85

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 33.5 bits (75), Expect = 0.002
 Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 2/77 (2%)

Query: 48  PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIP 107
            P + D P  ++++ RE +   + C   G+        ++ G+      +N      +  
Sbjct: 2   YPVLKDQP--AEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 59

Query: 108 SQLIGAHEGQQLVLECI 124
              +      +   +C 
Sbjct: 60  LVFLRPQASDEGHYQCF 76

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.1 bits (74), Expect = 0.004
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAAS-GSPPPSIMWRREGGEMITNSF 96
          PP        S   V  G+   + C+   GSPP    W ++G  M+T   
Sbjct: 2  PPSKPTISVPSS--VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADA 49

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.99
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.96
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	98.95
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	98.93
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	98.9
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.87
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.82
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.8
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.79
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.77
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.76
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.75
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	98.74
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	98.71
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.66
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	98.64
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.63
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.62
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.61
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.61
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.6
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.59
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.59
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.58
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.58
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.56
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.55
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.54
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	98.53
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.53
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.53
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.5
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.49
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.48
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	98.48
d2avga1	110	Cardiac myosin binding protein C, different domain	98.46
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.46
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.44
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	98.43
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.43
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.43
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.42
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.42
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.41
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.41
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.39
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.38
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.38
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.35
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.35
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.33
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.32
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.32
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.32
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.32
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.32
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.31
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.31
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.3
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	98.29
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.27
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.27
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.26
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.26
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.25
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.25
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.25
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.23
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.23
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.22
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.22
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.2
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.19
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.19
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.19
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.18
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.15
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.15
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.12
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.11
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.1
d2avga1	110	Cardiac myosin binding protein C, different domain	98.09
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.08
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.07
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.06
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.06
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.05
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.05
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.03
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.02
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.01
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.0
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.0
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.99
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	97.99
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	97.98
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	97.97
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.95
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	97.93
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	97.88
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	97.85
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	97.85
d1gxea_	130	Cardiac myosin binding protein C, different domain	97.84
d1pd6a_	94	Cardiac myosin binding protein C, different domain	97.83
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.82
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	97.81
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.8
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.8
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	97.79
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.77
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	97.76
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	97.73
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	97.65
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	97.61
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.58
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	97.52
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.47
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.46
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.45
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.44
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	97.43
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.42
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.39
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	97.34
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.32
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.32
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.31
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.22
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.13
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.13
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.11
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.08
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.08
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.05
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.05
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	96.99
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	96.97
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	96.94
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	96.92
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	96.9
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	96.9
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	96.89
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	96.88
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	96.86
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	96.85
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	96.82
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	96.81
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	96.8
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	96.77
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	96.76
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	96.75
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	96.75
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	96.74
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	96.74
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	96.73
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.67
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	96.62
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	96.59
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.56
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	96.52
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	96.5
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	96.48
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	96.47
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	96.45
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	96.45
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	96.44
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	96.39
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	96.34
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	96.32
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	96.29
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	96.26
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	96.26
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	96.24
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.24
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	96.24
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	96.23
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	96.23
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	96.21
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	96.21
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	96.19
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	96.16
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	96.15
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	96.11
d8faba1	103	Immunoglobulin light chain lambda variable domain,	96.1
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	96.07
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	95.99
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	95.98
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	95.98
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	95.98
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	95.97
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	95.97
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	95.95
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	95.93
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	95.93
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	95.92
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	95.92
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	95.88
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	95.87
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	95.87
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	95.85
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	95.84
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	95.81
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	95.73
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	95.66
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	95.64
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	95.62
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	95.56
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	95.54
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	95.53
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	95.5
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	95.49
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	95.48
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	95.42
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	95.42
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	95.42
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	95.39
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	95.37
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	95.36
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	95.26
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	95.24
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	95.23
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	95.23
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	95.19
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	95.13
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	95.09
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	95.09
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	95.09
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	95.08
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	95.05
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	95.03
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	95.0
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	94.97
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	94.93
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	94.92
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	94.9
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	94.89
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	94.88
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	94.85
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	94.85
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	94.77
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	94.74
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	94.73
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	94.72
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	94.71
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	94.66
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	94.64
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	94.58
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	94.58
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	94.54
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	94.54
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	94.51
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	94.47
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	94.45
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	94.45
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	94.43
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	94.39
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	94.39
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	94.36
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	94.35
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	94.32
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	94.31
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	94.31
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	94.31
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	94.3
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	94.27
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	94.26
d8faba1	103	Immunoglobulin light chain lambda variable domain,	94.23
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	94.15
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	94.14
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	94.11
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	94.11
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	94.08
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	94.07
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	94.03
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	94.0
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	93.99
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	93.98
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	93.93
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	93.89
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	93.83
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	93.83
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	93.82
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	93.75
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	93.73
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	93.71
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	93.71
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	93.69
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	93.67
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	93.66
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	93.59
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	93.58
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	93.57
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	93.56
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	93.54
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	93.53
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	93.52
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	93.52
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	93.45
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	93.44
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	93.38
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	93.34
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	93.32
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	93.3
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	93.26
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	93.23
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	93.21
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	93.19
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	93.19
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	93.18
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	93.18
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	93.18
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	93.1
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	93.1
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	92.89
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	92.86
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	92.83
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	92.8
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	92.8
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	92.79
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	92.77
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	92.77
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	92.7
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	92.67
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	92.67
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	92.63
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	92.61
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	92.58
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	92.55
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	92.47
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	92.43
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	92.43
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	92.4
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	92.34
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	92.32
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	92.29
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	92.28
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	92.24
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	92.22
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	92.21
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	92.21
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	92.17
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	92.17
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	92.14
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	92.03
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	92.01
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	91.97
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	91.94
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	91.88
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	91.85
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	91.8
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	91.77
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	91.75
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	91.73
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	91.7
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	91.66
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	91.6
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	91.56
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	91.45
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	91.4
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	91.35
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	91.35
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	91.33
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	91.31
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	91.28
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	91.28
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	91.25
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	91.25
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	91.21
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	91.2
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	91.18
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	91.12
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	90.98
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	90.95
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	90.88
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	90.85
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	90.85
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	90.85
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	90.83
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	90.82
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	90.79
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	90.72
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	90.7
d1igyb3	116	Immunoglobulin heavy chain gamma constant domain 2	90.66
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	90.65
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	90.65
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	90.64
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	90.6
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	90.53
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	90.51
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	90.48
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	90.43
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	90.43
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	90.43
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	90.41
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	90.41
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	90.36
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	90.34
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	90.32
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	90.32
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	90.29
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	90.26
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	90.25
d2j88h1	68	Immunoglobulin heavy chain gamma constant domain 1	90.17
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	90.05
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	89.95
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	89.93
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	89.9
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	89.85
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	89.73
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	89.51
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	89.48
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	89.18
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	89.16
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	89.08
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	88.96
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	88.85
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	88.84
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	88.76
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	88.68
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	88.67
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	88.65
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	88.43
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	88.31
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	88.29
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	88.28
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	87.96
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	87.93
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	87.92
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	87.73
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	87.71
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	87.67
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	87.37
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	87.25
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	87.16
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	86.43
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	86.4
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	86.29
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	86.19
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	86.03
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	85.83
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	85.83
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	85.82
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	85.72
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	85.52
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	85.2
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	84.98
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	84.93
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	84.93
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	84.8
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	84.7
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	84.43
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	84.37
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	84.24
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	83.82
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	83.79
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	83.66
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	83.59
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	83.57
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	83.49
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	83.46
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	83.36
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	83.34
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	83.33
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	83.29
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	83.27
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	83.09
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	82.93
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	82.83
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	82.71
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	82.54
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	82.46
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	82.39
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	82.21
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	82.13
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	81.97
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	81.71
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	81.67
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	81.55
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	81.54
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	81.48
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	81.37
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	81.32
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	81.18
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	81.12
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	81.12
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	80.97
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	80.97
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	80.94
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	80.56
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	80.33
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	80.28

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.99  E-value=5.1e-10  Score=62.29  Aligned_cols=44  Identities=18%  Similarity=0.290  Sum_probs=39.3

Q ss_pred             CeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        102 PIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      |.|...+....+..|+++.|.|.+.|.|.|.++|+|||..+..+
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~   45 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQ   45 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCC
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeecccccc
Confidence            67888888899999999999999999999999999998776543

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.96  E-value=8.9e-10  Score=62.22  Aligned_cols=45  Identities=18%  Similarity=0.256  Sum_probs=39.9

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      .|.|...+....+.+|+++.|.|.+.|.|.|.+.|+|||..+..+
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~   45 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS   45 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSB
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeecccee
Confidence            378888888889999999999999999999999999998776544

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=6.6e-10  Score=61.31  Aligned_cols=44  Identities=14%  Similarity=0.291  Sum_probs=38.7

Q ss_pred             CeeeeCCceeEeecCCcEEEEeeecccCCC-eeEEEcCCceeccC
Q psy16421        102 PIVKIPSQLIGAHEGQQLVLECISEAYPKS-VNYWTREKGDMIAN  145 (151)
Q Consensus       102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~k~~~~~~~~  145 (151)
                      |.|...+....+.+|+++.|.|.+.|.|.| .+.|+|||..+...
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~   46 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP   46 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCS
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCC
Confidence            678888888999999999999999999998 79999998766543

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.93  E-value=1e-09  Score=62.07  Aligned_cols=47  Identities=11%  Similarity=0.078  Sum_probs=41.1

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccCC
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG  146 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~~  146 (151)
                      .+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+|||..+..+.
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~   49 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSD   49 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCS
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeee
Confidence            36788888888999999999999999999999999999987775543

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=98.90  E-value=1.5e-09  Score=61.84  Aligned_cols=47  Identities=19%  Similarity=0.386  Sum_probs=41.5

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      ..+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+|||..+..+
T Consensus         6 ~~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~   52 (102)
T d1fhga_           6 HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES   52 (102)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCS
T ss_pred             CCCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccce
Confidence            45788888888899999999999999999999999999998777544

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.87  E-value=1.8e-09  Score=60.46  Aligned_cols=46  Identities=20%  Similarity=0.169  Sum_probs=40.6

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccCC
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG  146 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~~  146 (151)
                      +|.|...+..+.+.+|+++.|.|.+.|.|.|.+.|+||+..+..+.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~   47 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAP   47 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCST
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeee
Confidence            6888888888999999999999999999999999999987665443

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=2.8e-09  Score=59.55  Aligned_cols=46  Identities=17%  Similarity=0.233  Sum_probs=40.3

Q ss_pred             CeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccCCC
Q psy16421        102 PIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGK  147 (151)
Q Consensus       102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~~~  147 (151)
                      +.|...+...++.+|+++.|.|.+.|.|.|.+.|+|+++.+.....
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~   47 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD   47 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCC
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccc
Confidence            5677788889999999999999999999999999999887765544

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.5e-09  Score=60.66  Aligned_cols=44  Identities=18%  Similarity=0.271  Sum_probs=38.8

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      .|.|...+....+.+|+++.|.|.+.|.|.|.+.|++++..+..
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~   45 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSA   45 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSE
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeee
Confidence            57888888888899999999999999999999999999766543

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.79  E-value=4.3e-09  Score=59.62  Aligned_cols=46  Identities=26%  Similarity=0.600  Sum_probs=37.3

Q ss_pred             CCCeeeeCCcee--EeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        100 VPPIVKIPSQLI--GAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       100 ~~p~~~~~~~~~--~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      +||.|...+...  ++..|+++.|.|.+.|.|.|.+.|+|+|..+...
T Consensus         2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~   49 (100)
T d1qz1a3           2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENE   49 (100)
T ss_dssp             EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC
T ss_pred             cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccc
Confidence            477887765543  5678999999999999999999999998766543

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.77  E-value=5e-09  Score=58.14  Aligned_cols=43  Identities=16%  Similarity=0.400  Sum_probs=36.1

Q ss_pred             CCeeeeCC-ceeEeecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421        101 PPIVKIPS-QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       101 ~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      +|.|...+ ..+.+.+|+++.|.|.+.|.|.|.+.|+|+|..+.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~   45 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS   45 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECC
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCc
Confidence            46777664 45678899999999999999999999999987663

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.76  E-value=6.2e-09  Score=57.96  Aligned_cols=43  Identities=26%  Similarity=0.380  Sum_probs=36.8

Q ss_pred             CCCeeeeC-CceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421        100 VPPIVKIP-SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       100 ~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      .+|.|... +....+.+|+++.|.|.+.|.|.|.+.|+|+++..
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~   46 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ   46 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCC
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEeccccc
Confidence            46777665 67888999999999999999999999999976644

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.75  E-value=5.4e-09  Score=58.88  Aligned_cols=48  Identities=17%  Similarity=0.315  Sum_probs=39.0

Q ss_pred             CCCeeeeCCceeEeecC---CcEEEEeeecccCCCeeEEEcCCceeccCCC
Q psy16421        100 VPPIVKIPSQLIGAHEG---QQLVLECISEAYPKSVNYWTREKGDMIANGK  147 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g---~~~~l~C~~~g~p~~~~~W~k~~~~~~~~~~  147 (151)
                      .+|.|...+....+.+|   +++.|.|.+.|.|.|.++|+|||..+.....
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~   53 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPD   53 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTT
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCC
Confidence            35778877777777665   7899999999999999999999877755443

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1e-08  Score=58.10  Aligned_cols=45  Identities=9%  Similarity=0.062  Sum_probs=38.2

Q ss_pred             CeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccCC
Q psy16421        102 PIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG  146 (151)
Q Consensus       102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~~  146 (151)
                      |.|...+....+.+|+++.|.|.+.|.|.|.+.|+|||..+..+.
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~   45 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE   45 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSS
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCC
Confidence            456666778889999999999999999999999999987765443

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.71  E-value=2e-09  Score=59.98  Aligned_cols=42  Identities=14%  Similarity=0.305  Sum_probs=35.8

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      |...|..+.+.+|+++.|.|.+.|.|.|.+.|+|||..+..+
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~   43 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTS   43 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSS
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccc
Confidence            344567788999999999999999999999999998766543

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=4.8e-09  Score=57.60  Aligned_cols=38  Identities=11%  Similarity=-0.098  Sum_probs=33.8

Q ss_pred             CceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      +...++.+|+++.|.|.+.|.|.|.++|+|+|..+...
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~   48 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI   48 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee
Confidence            56778999999999999999999999999998877643

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.1e-07  Score=52.14  Aligned_cols=68  Identities=25%  Similarity=0.455  Sum_probs=47.8

Q ss_pred             CeeEeCCCCCceEeecCCeEEEEeeecCCCCC-eEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPP-SIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        49 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~-~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      |.|...|  .++.+.+|+++.|.|.+.|.|.| .+.|++ |++.+....   .... .+    ......+.....|.+..
T Consensus         2 P~f~~~P--~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k-~g~~i~~~~---~~~~-~l----~~~~~~d~G~Y~C~A~N   70 (85)
T d1rhfa2           2 PFFTVEP--KDLAVPPNAPFQLSCEAVGPPEPVTIVWWR-GTTKIGGPA---PSPS-VL----NVTGVTQSTMFSCEAHN   70 (85)
T ss_dssp             CEEEECC--CCEEECTTCCEEEEEEEECSSSCCEEEEEE-TTEECSCSE---ESSE-EE----EECCCSSCEEEEEEEEE
T ss_pred             CcEEEeC--CcEEEcCCCEEEEEEEEecCCcceEEEEEE-CCEECCCCC---Ccce-EE----ecCCccccEEEEEEEEc
Confidence            5666666  67889999999999999999987 899999 666654321   1111 11    11234577899999864

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.63  E-value=1.8e-08  Score=56.65  Aligned_cols=38  Identities=11%  Similarity=0.293  Sum_probs=32.3

Q ss_pred             ceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccCC
Q psy16421        109 QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG  146 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~~  146 (151)
                      ....+..|+++.|.|.+.|.|.|.+.|+|||..+..+.
T Consensus        13 ~~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~   50 (97)
T d3dara1          13 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH   50 (97)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGG
T ss_pred             ccEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccC
Confidence            34567899999999999999999999999988776543

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.62  E-value=2.9e-08  Score=55.36  Aligned_cols=44  Identities=23%  Similarity=0.314  Sum_probs=38.2

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCC-eeEEEcCCceecc
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKS-VNYWTREKGDMIA  144 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~k~~~~~~~  144 (151)
                      .|.|...+....+.+|+.+.|.|.+.|.|.| .+.|+|||..+..
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~   46 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNW   46 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCT
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeee
Confidence            5778888888999999999999999999976 5999999876644

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.61  E-value=4.9e-08  Score=54.84  Aligned_cols=40  Identities=18%  Similarity=0.277  Sum_probs=34.2

Q ss_pred             CceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccCCC
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGK  147 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~~~  147 (151)
                      +..+.+..|+++.|.|.+.|.|.|.+.|+|+|..+..+..
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~   49 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPE   49 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTT
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccce
Confidence            4567889999999999999999999999999887765443

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.1e-08  Score=56.95  Aligned_cols=46  Identities=28%  Similarity=0.377  Sum_probs=36.1

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeee-cccCCCeeEEEcCCceeccC
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECIS-EAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~k~~~~~~~~  145 (151)
                      +||.+........+..|+++.|.|.+ .|.|.|.+.|+|+|..+...
T Consensus         1 VPP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~   47 (104)
T d1nbqa2           1 VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTN   47 (104)
T ss_dssp             BCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSC
T ss_pred             CCCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCC
Confidence            35666555445568899999999998 58999999999998776544

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.60  E-value=5.1e-08  Score=53.90  Aligned_cols=73  Identities=21%  Similarity=0.508  Sum_probs=48.8

Q ss_pred             CeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        49 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      |.|...+. ..+.+.+|+.+.|.|.+.|.|.|.+.|++ +++++.........-.+.+.    .+...+.....|.+..
T Consensus         3 P~f~~~p~-~~~~v~~G~~~~l~C~~~g~P~p~v~W~~-~~~~i~~~~~~~~~~~L~i~----~v~~~d~G~Y~C~a~N   75 (89)
T d1biha4           3 PKYEQKPE-KVIVVKQGQDVTIPCKVTGLPAPNVVWSH-NAKPLSGGRATVTDSGLVIK----GVKNGDKGYYGCRATN   75 (89)
T ss_dssp             EEEEECCC-SEEEECTTSCEEEECEEEEESCCCCEEEE-TTEECCSSSEEEETTEEEES----SCCSTTCEEEEEEEEE
T ss_pred             CeEEECCC-CCEEEeCCCeEEEEEEEEEeCCCEEEEEe-CCccCccccEEEeeeeEEEC----CCChhhCEEEEEEEEE
Confidence            55655552 44677899999999999999999999999 66665432110111122222    2456788899999864

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.59  E-value=3.1e-08  Score=54.81  Aligned_cols=72  Identities=25%  Similarity=0.459  Sum_probs=50.1

Q ss_pred             CeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC-CCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT-VPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        49 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      |.|...+  .+..+..|+++.|.|.+.|.|.|.+.|++ +++++....+.. ..-.+.+.    .+...+.....|.+..
T Consensus         2 P~f~~~~--~~~~v~~G~~~~l~C~~~g~P~p~v~W~k-~g~~i~~~~~~~~~~~~L~i~----~v~~~D~G~Y~C~a~N   74 (89)
T d1cs6a4           2 PDWLDVI--TDTEADIGSDLRWSCVASGKPRPAVRWLR-DGQPLASQNRIEVSGGELRFS----KLVLEDSGMYQCVAEN   74 (89)
T ss_dssp             EEEEECC--CCEEEETTCCEEEECEEEEESCCEEEEEE-TTEECCCCSSEEEETTEEEES----SCCGGGCEEEEEEEEE
T ss_pred             CCeEEEC--CCEEECCCCcEEEEEEEEEEcCCEEEEEE-eeccccccceeeeeeeeEEEE----eecccCCEEEEEEEEe
Confidence            5666666  67889999999999999999999999999 667665433210 01122222    2445678889998764

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3.3e-08  Score=54.82  Aligned_cols=38  Identities=16%  Similarity=0.291  Sum_probs=33.3

Q ss_pred             CceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      |..+++.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~   40 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNL   40 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSS
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccc
Confidence            56778999999999999999999999999998766543

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=5.2e-08  Score=55.01  Aligned_cols=40  Identities=30%  Similarity=0.395  Sum_probs=36.2

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCC-eeEEEcCC
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKS-VNYWTREK  139 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~k~~  139 (151)
                      .||.|...+....+.+|+.+.|.|.+.|.|+| .+.|+|++
T Consensus         1 GPP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~   41 (101)
T d3b5ha1           1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKIT   41 (101)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECC
T ss_pred             CCceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEecc
Confidence            47889988899999999999999999999988 69999865

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2.9e-08  Score=56.45  Aligned_cols=42  Identities=14%  Similarity=0.220  Sum_probs=34.8

Q ss_pred             CeeeeCCceeEeecCCcEEEEeeecccC-CCeeEEEcCCceec
Q psy16421        102 PIVKIPSQLIGAHEGQQLVLECISEAYP-KSVNYWTREKGDMI  143 (151)
Q Consensus       102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~k~~~~~~  143 (151)
                      +.|...++..++..|+++.|.|.+.|.| .|.++|+|++..+.
T Consensus         4 ~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~   46 (104)
T d2aw2a1           4 QLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTC   46 (104)
T ss_dssp             EECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCE
T ss_pred             cEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccc
Confidence            3455567788899999999999999998 48999999876553

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.56  E-value=9.3e-08  Score=53.59  Aligned_cols=72  Identities=17%  Similarity=0.298  Sum_probs=49.0

Q ss_pred             CeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC---CCC--eeeeCCceeEeecCCcEEEEe
Q psy16421         49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT---VPP--IVKIPSQLIGAHEGQQLVLEC  123 (151)
Q Consensus        49 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~---~~p--~~~~~~~~~~~~~g~~~~l~C  123 (151)
                      |.|...+  .++.+.+|+.+.|.|.+.|.|.|.+.|++ +++.+....+..   ..-  .+.+.    .+...+.....|
T Consensus         2 P~f~~~p--~~~~v~~G~~~~l~C~~~g~P~p~v~W~~-~~~~l~~~~~~~~~~~~~~~~L~I~----~~~~~D~G~Y~C   74 (97)
T d1koaa1           2 PRFIVKP--YGTEVGEGQSANFYCRVIASSPPVVTWHK-DDRELKQSVKYMKRYNGNDYGLTIN----RVKGDDKGEYTV   74 (97)
T ss_dssp             CEEEECC--CCCEEETTSCEEEEEEEECSSCCEEEEEE-TTEECCSBTTBBCCCSTTEEEEEES----CCCSGGGSCEEE
T ss_pred             CEEEEeC--CCEEEeCCCcEEEEEEEEEcCCCEEEEEE-eeeccceeeEEEEEecCCeeEEEeC----CCceecCEEEEE
Confidence            6677766  67889999999999999999999999999 667665433210   000  12221    134556667888


Q ss_pred             eecc
Q psy16421        124 ISEA  127 (151)
Q Consensus       124 ~~~g  127 (151)
                      .+..
T Consensus        75 ~a~N   78 (97)
T d1koaa1          75 RAKN   78 (97)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8753

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.55  E-value=5e-08  Score=55.77  Aligned_cols=41  Identities=12%  Similarity=0.193  Sum_probs=34.9

Q ss_pred             CCCeeeeC-CceeEeecCCcEEEEeeecccCCCeeEEEcCCc
Q psy16421        100 VPPIVKIP-SQLIGAHEGQQLVLECISEAYPKSVNYWTREKG  140 (151)
Q Consensus       100 ~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~  140 (151)
                      .+|.|... +...++..|+++.|.|.+.|.|.|.|.|+|++.
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~   44 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVE   44 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCc
Confidence            45777655 678899999999999999999999999998753

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.54  E-value=6.6e-08  Score=54.24  Aligned_cols=39  Identities=18%  Similarity=0.215  Sum_probs=32.0

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCC-CeeEEEcCCcee
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPK-SVNYWTREKGDM  142 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~~~W~k~~~~~  142 (151)
                      +.+.|....+..|+++.|.|.+.|.|+ |.+.|+|+++..
T Consensus         3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~   42 (97)
T d1epfa1           3 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEK   42 (97)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCE
T ss_pred             EEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeee
Confidence            455677788999999999999999985 689999955443

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=98.53  E-value=1.7e-07  Score=52.96  Aligned_cols=74  Identities=20%  Similarity=0.337  Sum_probs=51.4

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC----CC--CeeeeCCceeEeecCCcEE
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT----VP--PIVKIPSQLIGAHEGQQLV  120 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~----~~--p~~~~~~~~~~~~~g~~~~  120 (151)
                      .+|.|...+  .++.+.+|+++.|.|.+.|.|.|.+.|++ +++.+....+..    ..  -.+.+.    .+...+...
T Consensus         7 ~~P~f~~~~--~~~~v~~G~~~~l~C~~~g~P~p~v~W~k-~~~~i~~~~~~~~~~~~~~~~~L~I~----~~~~~D~G~   79 (102)
T d1fhga_           7 VKPYFTKTI--LDMEVVEGSAARFDCKVEGYPDPEVMWFK-DDNPVKESRHFQIDYDEEGNCSLTIS----EVCGDDDAK   79 (102)
T ss_dssp             EEEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCSSSEEEEECTTCEEEEEES----SCCGGGCEE
T ss_pred             CCCeEEcCC--CcEEEecCCcEEEEEEEEeccCCeEEEEe-eeccccceeeEeEEEecCceeeeEec----CCCHHhCEE
Confidence            467787777  67889999999999999999999999999 666665433200    00  011111    244567788


Q ss_pred             EEeeecc
Q psy16421        121 LECISEA  127 (151)
Q Consensus       121 l~C~~~g  127 (151)
                      ..|.+..
T Consensus        80 Y~C~a~N   86 (102)
T d1fhga_          80 YTCKAVN   86 (102)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9998753

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=3.7e-08  Score=54.97  Aligned_cols=46  Identities=13%  Similarity=0.216  Sum_probs=38.7

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecccCC-CeeEEEcCCceecc
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPK-SVNYWTREKGDMIA  144 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~~~W~k~~~~~~~  144 (151)
                      ..+|.|...+..+.+.+|+++.|.|.+.|.|+ +.++|+|+|..+..
T Consensus         4 ~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~   50 (93)
T d1n26a1           4 RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGS   50 (93)
T ss_dssp             SCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSC
T ss_pred             CCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccc
Confidence            35688888888899999999999999998775 57999999776643

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=4.8e-08  Score=56.02  Aligned_cols=35  Identities=23%  Similarity=0.413  Sum_probs=29.2

Q ss_pred             eEeecCCcEEEEeeec-ccCCCeeEEEcCCceeccC
Q psy16421        111 IGAHEGQQLVLECISE-AYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~-g~p~~~~~W~k~~~~~~~~  145 (151)
                      ..+..|+++.|.|.+. |.|.+.+.|+|++..+...
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~   47 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTA   47 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCC
Confidence            3578999999999985 8999999999998766544

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.50  E-value=1.3e-07  Score=52.51  Aligned_cols=73  Identities=16%  Similarity=0.252  Sum_probs=49.4

Q ss_pred             CCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC-----CCCeeeeCCceeEeecCCcEEEE
Q psy16421         48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT-----VPPIVKIPSQLIGAHEGQQLVLE  122 (151)
Q Consensus        48 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~-----~~p~~~~~~~~~~~~~g~~~~l~  122 (151)
                      +|.+...+  .++.+.+|+++.|.|.+.|.|.|.+.|++ +++.+....+..     ..-.+.+.    .+...+.....
T Consensus         2 ~P~i~~~~--~~~~v~~G~~~~l~c~~~g~P~p~v~W~~-~~~~i~~~~~~~~~~~~~~~~L~I~----~~~~~D~G~Y~   74 (93)
T d1wiua_           2 KPKILTAS--RKIKIKAGFTHNLEVDFIGAPDPTATWTV-GDSGAALAPELLVDAKSSTTSIFFP----SAKRADSGNYK   74 (93)
T ss_dssp             CCEECCCC--CEEEECSSBCCEEEEEEECCSSCEEEEEC-SSSSCBCSTTSEEEEETTEEEEECT----TBCGGGCEEEE
T ss_pred             CCeEEeCC--CcEEEeCCCeEEEEEEEEEecCCeEEEEe-eeeeceeeeeeeecccccceeeccc----cccccccEEEE
Confidence            46666655  67889999999999999999999999999 565554332110     00011111    24456778889


Q ss_pred             eeecc
Q psy16421        123 CISEA  127 (151)
Q Consensus       123 C~~~g  127 (151)
                      |.+..
T Consensus        75 c~a~N   79 (93)
T d1wiua_          75 LKVKN   79 (93)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98764

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=6.6e-08  Score=52.82  Aligned_cols=35  Identities=20%  Similarity=0.091  Sum_probs=30.3

Q ss_pred             eeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        110 LIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ...+.+|+++.|.|.+.|.|.|.+.|++++..+..
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~   42 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ   42 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeeccccee
Confidence            34689999999999999999999999998765543

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.5e-07  Score=53.61  Aligned_cols=43  Identities=19%  Similarity=0.427  Sum_probs=34.5

Q ss_pred             CeeeeCC-ceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        102 PIVKIPS-QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       102 p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      |.|..+. ..+.+..|+++.|.|.+.|.|.|.+.|++||..+..
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~   45 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDE   45 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCT
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCccccc
Confidence            5555543 446678899999999999999999999999776543

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.48  E-value=8.5e-08  Score=53.86  Aligned_cols=74  Identities=19%  Similarity=0.230  Sum_probs=51.0

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC------CCCeeeeCCceeEeecCCcEE
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT------VPPIVKIPSQLIGAHEGQQLV  120 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~------~~p~~~~~~~~~~~~~g~~~~  120 (151)
                      .+|.|...+  .+..+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....+..      ..-.+.+.    .+...+...
T Consensus         3 eaP~f~~~~--~~~~v~~g~~v~l~c~v~g~P~p~v~W~k-~~~~i~~~~~~~~~~~~~~~~~L~I~----~~~~~D~G~   75 (98)
T d1g1ca_           3 EAPKIFERI--QSQTVGQGSDAHFRVRVVGKPDPECEWYK-NGVKIERSDRIYWYWPEDNVCELVIR----DVTGEDSAS   75 (98)
T ss_dssp             EEEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCCSSEEEEEEETTEEEEEEC----SCCGGGCEE
T ss_pred             cCCeEecCC--CcEEEcCCCcEEEEEEEEEecCCeEEEEe-CceEEeeeeeeEEEeccceEEEEEec----cCccccCEE
Confidence            357777776  67889999999999999999999999999 676665432100      00011111    234567788


Q ss_pred             EEeeecc
Q psy16421        121 LECISEA  127 (151)
Q Consensus       121 l~C~~~g  127 (151)
                      ..|.+..
T Consensus        76 Y~c~a~N   82 (98)
T d1g1ca_          76 IMVKAIN   82 (98)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8998763

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.6e-07  Score=52.89  Aligned_cols=42  Identities=12%  Similarity=0.069  Sum_probs=35.4

Q ss_pred             CeeeeCCceeEeecCCcEEEEeeecccC---CCeeEEEcCCceec
Q psy16421        102 PIVKIPSQLIGAHEGQQLVLECISEAYP---KSVNYWTREKGDMI  143 (151)
Q Consensus       102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~~~~~W~k~~~~~~  143 (151)
                      +.|...+...++..|+++.|.|.+.|.|   .|.+.|+|++...+
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~   49 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDL   49 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCS
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeee
Confidence            4577778889999999999999999998   57899999875443

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.46  E-value=4.3e-07  Score=50.29  Aligned_cols=72  Identities=18%  Similarity=0.368  Sum_probs=48.6

Q ss_pred             CeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCC----CCCCeeeeCCceeEeecCCcEEEEee
Q psy16421         49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN----TVPPIVKIPSQLIGAHEGQQLVLECI  124 (151)
Q Consensus        49 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~----~~~p~~~~~~~~~~~~~g~~~~l~C~  124 (151)
                      +.|...|  ....+.+|+.+.|.|.+.|.|.|.+.|++ +++.+......    ...-.+.+.    .+...+.....|.
T Consensus         2 ~~F~~~P--~~~~v~~G~~~~l~C~v~g~p~p~v~W~~-~~~~i~~~~~~~~~~~~~~~L~I~----~~~~~D~G~Y~C~   74 (92)
T d1epfa2           2 LMFKNAP--TPQEFKEGEDAVIVCDVVSSLPPTIIWKH-KGRDVILKKDVRFIVLSNNYLQIR----GIKKTDEGTYRCE   74 (92)
T ss_dssp             SEEEECC--SSEECCTTSCEEECCEEECSSCCEEEEEE-TTEEGGGGCCTTEEECTTSCEEET----TCCGGGCEEEEEE
T ss_pred             cEEEEcC--CCEEEeCCCcEEEEEEEeecCCCeEEEEE-cCcccccccceeeeeeeeeeEEEC----CCCHHhCEEEEEE
Confidence            3455555  67889999999999999999999999999 45554432210    001112222    2456788899998


Q ss_pred             ecc
Q psy16421        125 SEA  127 (151)
Q Consensus       125 ~~g  127 (151)
                      +..
T Consensus        75 a~n   77 (92)
T d1epfa2          75 GRI   77 (92)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            754

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.1e-07  Score=52.55  Aligned_cols=44  Identities=20%  Similarity=0.274  Sum_probs=35.9

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccCCCC
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKT  148 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~~~~  148 (151)
                      |..++....+..|+++.|.|.+. .|.|.+.|+|+|..+..+...
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~   46 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKS   46 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTC
T ss_pred             EEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCc
Confidence            44567788999999999999984 688999999998877665543

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=8.2e-07  Score=49.95  Aligned_cols=65  Identities=20%  Similarity=0.228  Sum_probs=44.7

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCC-----CCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN-----TVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      ....+.+|+.+.|.|.+.|.|.+.+.|++ +++.+....+.     .....+.+.    .+...+.....|.+..
T Consensus         8 ~~~~v~~G~~~~l~C~v~g~p~p~v~W~k-~~~~l~~~~~~~~~~~~~~~~L~I~----~~~~~D~G~Y~C~a~N   77 (101)
T d2cqva1           8 EDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQIQESEHMKVENSENGSKLTIL----AARQEHCGCYTLLVEN   77 (101)
T ss_dssp             CSEEEETTCCEEEEEEEESSSSCEEEEEE-SSSBCCCSSSEEEEECSSEEEEEET----TCCTTTCEEEEEEEEC
T ss_pred             CcEEEeCCCcEEEEEEEEecCCCEEEEEe-CceeeccCCcEEEEEecceeEEEEe----eCCcccCEEEEEEEEE
Confidence            57889999999999999999999999999 66665543320     000111111    2356778888898763

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.43  E-value=2.5e-07  Score=52.01  Aligned_cols=75  Identities=24%  Similarity=0.503  Sum_probs=47.2

Q ss_pred             CCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCC-------CCeeeeCCceeEeecCCcEE
Q psy16421         48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV-------PPIVKIPSQLIGAHEGQQLV  120 (151)
Q Consensus        48 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~-------~p~~~~~~~~~~~~~g~~~~  120 (151)
                      ||.+...+.....++..|+++.|.|.+.|.|.|.+.|++ +++.+........       .-.+.+.    .+...+...
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~-~g~~i~~~~~~~~~~~~~~~~~~L~I~----~v~~~D~G~   77 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTK-DGEPIENEEEDDEKHIFSDDSSELTIR----NVDKNDEAE   77 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEE-TTEECCCC--CCSSEEECTTSCEEEEC----SCCGGGCEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEe-CCcccccccccceeEEeecCceEEEeC----CCCcccCEE
Confidence            455555442223455679999999999999999999999 6666653321110       1112221    245577888


Q ss_pred             EEeeecc
Q psy16421        121 LECISEA  127 (151)
Q Consensus       121 l~C~~~g  127 (151)
                      ..|.+..
T Consensus        78 Y~C~a~N   84 (100)
T d1qz1a3          78 YVCIAEN   84 (100)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999863

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=3.5e-07  Score=50.89  Aligned_cols=45  Identities=9%  Similarity=0.165  Sum_probs=35.0

Q ss_pred             CCeeeeC-CceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccCC
Q psy16421        101 PPIVKIP-SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG  146 (151)
Q Consensus       101 ~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~~  146 (151)
                      +|.|... .....+.+|+++.|.|.+. .|+|.+.|+|||..+..++
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~   50 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSG   50 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCS
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeee
Confidence            4555544 4456789999999999985 5889999999988886543

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=2.7e-07  Score=50.74  Aligned_cols=43  Identities=16%  Similarity=0.359  Sum_probs=34.2

Q ss_pred             Ceeee-CCceeEeecCCcEEEEeeec-ccCCCeeEEEcCCceecc
Q psy16421        102 PIVKI-PSQLIGAHEGQQLVLECISE-AYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       102 p~~~~-~~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~k~~~~~~~  144 (151)
                      +.+.. .+....+.+|+++.|.|.+. +.|.|.+.|+|++..+..
T Consensus         2 ~~v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~   46 (89)
T d1gl4b_           2 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP   46 (89)
T ss_dssp             EEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCC
T ss_pred             CEEEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeec
Confidence            44444 46677899999999999997 678899999998776654

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.42  E-value=2e-07  Score=50.97  Aligned_cols=44  Identities=18%  Similarity=0.336  Sum_probs=35.6

Q ss_pred             CeeeeCCceeEeecCCcEEEEeeecccCCCe-eEEEcCCceeccC
Q psy16421        102 PIVKIPSQLIGAHEGQQLVLECISEAYPKSV-NYWTREKGDMIAN  145 (151)
Q Consensus       102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~k~~~~~~~~  145 (151)
                      |.+.+.+....+.+|+++.|.|.+.+.|.+. +.|+|||..+..+
T Consensus         5 p~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~   49 (85)
T d2fcba1           5 AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH   49 (85)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC
T ss_pred             CEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccc
Confidence            4566667777899999999999999988775 8899987665443

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.41  E-value=2.9e-07  Score=50.15  Aligned_cols=45  Identities=16%  Similarity=0.309  Sum_probs=36.1

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCe-eEEEcCCceeccC
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSV-NYWTREKGDMIAN  145 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~k~~~~~~~~  145 (151)
                      +|.+.+.+....+.+|+++.|+|.+.|.|.+. +.|+|+|..+..+
T Consensus         5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~   50 (84)
T d1fnla1           5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ   50 (84)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS
T ss_pred             CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec
Confidence            46677778788899999999999999999887 6667876655443

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=3.8e-07  Score=50.69  Aligned_cols=80  Identities=9%  Similarity=0.101  Sum_probs=52.3

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCC-CeEEEEeCCeeeEecccCC--CCCCeeeeCCceeEeecCCcEEEEe
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPP-PSIMWRREGGEMITNSFNN--TVPPIVKIPSQLIGAHEGQQLVLEC  123 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~-~~~~W~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~g~~~~l~C  123 (151)
                      .+|.+...+  ..+.+.+|+++.|.|.+.+.++ +.+.|+| +++.+......  ..-..+.+.    .+...+.....|
T Consensus         5 ~~P~~~~~~--~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k-~~~~l~~~~~~~~~~~~~L~I~----~v~~~D~G~Y~C   77 (93)
T d1n26a1           5 RCPAQEVAR--GVLTSLPGDSVTLTCPGVEPEDNATVHWVL-RKPAAGSHPSRWAGMGRRLLLR----SVQLHDSGNYSC   77 (93)
T ss_dssp             CCCCCCCCT--TEEEECTTCCEEEECTTSCTTCCSEEEEEE-ECSSSSCCCEEEEEESSEEEEC----SCCGGGCEEEEE
T ss_pred             CCCcEEeCC--CCEEEeCCCcEEEEEEeecCCCCceEEEEE-ccccccceeeEEecCCCEEEEC----CCChhcCEEEEE
Confidence            456666655  5678889999999999988665 5899999 45554321110  001122221    255788899999


Q ss_pred             eecccCCCee
Q psy16421        124 ISEAYPKSVN  133 (151)
Q Consensus       124 ~~~g~p~~~~  133 (151)
                      .+.+.....+
T Consensus        78 ~a~n~~~~t~   87 (93)
T d1n26a1          78 YRAGRPAGTV   87 (93)
T ss_dssp             ESSSSCSCEE
T ss_pred             EECCccccEE
Confidence            9988765544

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.2e-07  Score=55.69  Aligned_cols=45  Identities=18%  Similarity=0.282  Sum_probs=36.6

Q ss_pred             CCCCeeee-----CCceeEeecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421         99 TVPPIVKI-----PSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus        99 ~~~p~~~~-----~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      +.||.|..     .+..+.+.+|+.+.|.|.+.|.|.|.+.|+|++..+.
T Consensus         2 q~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~   51 (130)
T d1gxea_           2 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGN   51 (130)
T ss_dssp             CBCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSC
T ss_pred             CCCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEcc
Confidence            35676632     3567889999999999999999999999999876554

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.4e-07  Score=51.19  Aligned_cols=44  Identities=14%  Similarity=0.262  Sum_probs=32.4

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCe-eEEEcCCceecc
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSV-NYWTREKGDMIA  144 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~k~~~~~~~  144 (151)
                      .|.|.+.+....+.+|+.+.|.|.+.|.|.+. +.|++++..+..
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~   45 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE   45 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeec
Confidence            36777788778899999999999999999886 666788665543

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=6.2e-08  Score=54.23  Aligned_cols=32  Identities=19%  Similarity=0.387  Sum_probs=26.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.++.++|+|.|+|.|.|..|...+..+.|.|
T Consensus        64 I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          64 VVNTTKRDAGKYRCMIRTEGGVGISNYAELVV   95 (96)
T ss_dssp             ECSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ECCCCHHHCeEEEEEEEeCCCeEEEEEEEEEE
Confidence            57899999999999999999965566667665

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=1.7e-07  Score=52.41  Aligned_cols=33  Identities=33%  Similarity=0.456  Sum_probs=28.0

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |.+++++|+|.|+|.|.|..|...+..+.|.|.
T Consensus        60 I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~   92 (96)
T d1l6za2          60 IDPIKREDAGEYQCEISNPVSVRRSNSIKLDII   92 (96)
T ss_dssp             ECSCCGGGCEEEEEEEESSSCCEECCCCEEEEC
T ss_pred             EeccchhhceEEEEEEEeCCCCeEEEeEEEEEE
Confidence            568899999999999999998666677887774

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.4e-07  Score=52.20  Aligned_cols=33  Identities=27%  Similarity=0.567  Sum_probs=27.8

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |.+++++|+|.|+|.|.|..|...+..+.|+|+
T Consensus        58 I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~l~V~   90 (91)
T d1rhfa1          58 LKSVERSDAGRYWCQVEDGGETEISQPVWLTVE   90 (91)
T ss_dssp             ESSCCGGGCEEEEEEESSCTTCEECCCEEEEEE
T ss_pred             ECCCCcccCEEEEEEEEECCCCEEEEEEEEEEE
Confidence            578999999999999999998656677777764

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.5e-07  Score=52.11  Aligned_cols=31  Identities=23%  Similarity=0.439  Sum_probs=26.1

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|+|+|.|..| .....+.|.|
T Consensus        59 i~~v~~~D~G~Y~C~Asn~~g-~~~~s~~l~V   89 (90)
T d1gsma1          59 VRNASLSAAGTRVCVGSCGGR-TFQHTVQLLV   89 (90)
T ss_dssp             ECSCCGGGCEEEEEEEEETTE-EEEEEEEEEE
T ss_pred             cCccChhhCCcEEEEEEeCCC-cEEEEEEEEE
Confidence            578999999999999999887 5666777665

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.32  E-value=1.5e-07  Score=51.99  Aligned_cols=33  Identities=15%  Similarity=0.382  Sum_probs=27.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |.+++++|+|.|.|+|.|..+...+..+.|+|+
T Consensus        55 I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~   87 (89)
T d1fnla2          55 IPKATLKDSGSYFCRGLVGSKNVSSETVNITIT   87 (89)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             ECccceeccceEEEEEEeCCCCeEEeeEEEEEE
Confidence            568999999999999999988555677777774

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.7e-07  Score=53.12  Aligned_cols=42  Identities=17%  Similarity=0.330  Sum_probs=35.2

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      ++.+...+..+.+.+|+++.|.|.+.|.|.|.+.|+|++..+
T Consensus         4 ~v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~   45 (105)
T d1nbqa1           4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDT   45 (105)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTE
T ss_pred             ceEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeece
Confidence            455666677788999999999999999999999999976543

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.32  E-value=1.2e-06  Score=48.29  Aligned_cols=73  Identities=26%  Similarity=0.491  Sum_probs=47.7

Q ss_pred             CCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        48 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +|.+.... +..+.+.+|+.+.|.|.+.|.|.|.+.|+++++..... . ......+.+.    .+...+.....|.+..
T Consensus         4 ~P~i~~~~-p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~-~-~~~~~~L~I~----~v~~~D~G~Y~C~a~N   76 (91)
T d1cs6a3           4 APSIKAKF-PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK-W-LSSEPLLHIQ----NVDFEDEGTYECEAEN   76 (91)
T ss_dssp             EEEEEECC-CSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC-C-SBSSSEEEEC----SCCGGGCEEEEEEEEE
T ss_pred             CCeEEeeC-CCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE-e-eeeeeEEEeC----CCCccCCEEEEEEEEE
Confidence            45554432 15778889999999999999999999999955432221 0 1112233332    2456778889999864

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.32  E-value=6e-08  Score=53.61  Aligned_cols=42  Identities=17%  Similarity=0.190  Sum_probs=35.1

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccCC
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG  146 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~~  146 (151)
                      |..+.....+.+|+++.|.|.+ +.|.|.+.|+|||..+..+.
T Consensus         4 i~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~   45 (89)
T d1tiua_           4 VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASP   45 (89)
T ss_dssp             CSBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSS
T ss_pred             EEcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccce
Confidence            4556788899999999999998 57899999999988775543

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.32  E-value=2.3e-06  Score=46.47  Aligned_cols=71  Identities=15%  Similarity=0.145  Sum_probs=48.7

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeec
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISE  126 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~  126 (151)
                      .+|.+...|  ....+.+|++++|.|.+.+.+.+.+.|++.++..+...     ...+.+..    +...+.....|.+.
T Consensus         4 Pkpvi~~~P--~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~----~~~~d~G~Y~C~a~   72 (84)
T d1fnla1           4 PKAVVFLEP--QWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ-----ASSYFIDA----ATVNDSGEYRCQTN   72 (84)
T ss_dssp             CCCEEEEES--CCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS-----CSEEEESS----CCGGGCEEEEEECS
T ss_pred             CCCEEEECC--CCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec-----ceeeEecC----CcccCCEEEEEEcc
Confidence            456666666  56789999999999999998877655543366665532     22344332    45678889999987


Q ss_pred             cc
Q psy16421        127 AY  128 (151)
Q Consensus       127 g~  128 (151)
                      +.
T Consensus        73 ~s   74 (84)
T d1fnla1          73 LS   74 (84)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=7.6e-07  Score=49.01  Aligned_cols=35  Identities=14%  Similarity=0.257  Sum_probs=29.5

Q ss_pred             ceeEeecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421        109 QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~  143 (151)
                      ....+..|+++.|.|.+.|.|.|.+.|++++..+.
T Consensus         9 ~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~   43 (90)
T d1vcaa2           9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL   43 (90)
T ss_dssp             SEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCC
T ss_pred             CcEEEECCCEEEEEEeccCCCCceEEEEecCccce
Confidence            34556789999999999999999999999766543

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.31  E-value=1.5e-06  Score=48.04  Aligned_cols=73  Identities=15%  Similarity=0.346  Sum_probs=48.6

Q ss_pred             CCeeEeCCCCCceEeecCCeEEEEeeecCCCCC-eEEEEeCCeeeEecccC----CCCCCeeeeCCceeEeecCCcEEEE
Q psy16421         48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPP-SIMWRREGGEMITNSFN----NTVPPIVKIPSQLIGAHEGQQLVLE  122 (151)
Q Consensus        48 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~-~~~W~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~~~g~~~~l~  122 (151)
                      .|.|...+  .++.+.+|+.+.|.|.+.|.|.| .+.|++ +++.+.....    ....-.+.+.    .+...+.....
T Consensus         2 ~P~i~~~p--~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~-~g~~l~~~~~~~~~~~~~~~L~i~----~v~~~D~G~Y~   74 (94)
T d1biha1           2 YPVLKDQP--AEVLFRENNPTVLECIIEGNDQGVKYSWKK-DGKSYNWQEHNAALRKDEGSLVFL----RPQASDEGHYQ   74 (94)
T ss_dssp             CCEECCCC--SEEEEETTSCEEECCCEESCCSSCEEEEEE-SSSBCCTTTTTEEECTTSCCEEES----SCCGGGCEEEE
T ss_pred             CCEEEecC--CcEEEeCCCeEEEEEEecCCCCeeEEEEEe-eeeeeeeecceeeecccceEEEEe----ccChhcCeEEE
Confidence            46666665  67889999999999999998865 699999 6766653321    0001122222    23456778899


Q ss_pred             eeecc
Q psy16421        123 CISEA  127 (151)
Q Consensus       123 C~~~g  127 (151)
                      |.+..
T Consensus        75 C~a~N   79 (94)
T d1biha1          75 CFAET   79 (94)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99863

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.30  E-value=1.5e-07  Score=51.82  Aligned_cols=33  Identities=27%  Similarity=0.487  Sum_probs=27.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |.+++.+|+|.|.|.|.|..+...+..+.|+|+
T Consensus        53 i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~   85 (88)
T d2fcba2          53 IPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQ   85 (88)
T ss_dssp             ETTCCGGGCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             cCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEe
Confidence            568999999999999999988555667777764

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.29  E-value=4.3e-07  Score=50.15  Aligned_cols=65  Identities=20%  Similarity=0.462  Sum_probs=44.5

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCC-----ceeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPS-----QLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~-----~~~~~~~g~~~~l~C~~~g  127 (151)
                      .++.+.+|+++.|.|.+.|.|.|.+.|++ +++.+.....    ..+....     ....+...+.....|.+..
T Consensus         7 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~~-~g~~l~~~~~----~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   76 (91)
T d1tnna_           7 RSMTVYEGESARFSCDTDGEPVPTVTWLR-KGQVLSTSAR----HQVTTTKYKSTFEISSVQASDEGNYSVVVEN   76 (91)
T ss_dssp             CCEECSSSSCCCEEEECCCSSCCCCEEES-SSSTTCSSSS----CEEEECSSEEEEECSSCCSCCCEEEEEECBC
T ss_pred             cCEEEeCCCcEEEEEEEEEEeCCeEEEEE-eecccccccc----eeeeeecceeEEeecCCCHHHCEEEEEEEEE
Confidence            57888999999999999999999999999 5666543221    1111110     0112445678899998864

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=4.3e-07  Score=52.15  Aligned_cols=38  Identities=16%  Similarity=0.040  Sum_probs=32.3

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccC---CCeeEEEcCCce
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYP---KSVNYWTREKGD  141 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p---~~~~~W~k~~~~  141 (151)
                      |...+...++.+|+++.|.|.+.|.|   .|.+.|+|++..
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~   43 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWM   43 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSC
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeecc
Confidence            45567788999999999999999998   578999998643

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.27  E-value=3.6e-06  Score=46.85  Aligned_cols=65  Identities=12%  Similarity=0.213  Sum_probs=45.1

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC-------CCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT-------VPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~-------~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      .++.+.+|+++.|.|.+.|.|.|.+.|++ +++.+.......       .--.+.+.    .+...+.....|.+..
T Consensus        11 ~~~~~~~G~~v~l~C~~~g~P~~~v~W~k-~g~~i~~~~~~~~~~~~~~~~~~L~I~----~~~~~D~G~Y~C~a~N   82 (97)
T d1biha3          11 KDMMAKAGDVTMIYCMYGSNPMGYPNYFK-NGKDVNGNPEDRITRHNRTSGKRLLFK----TTLPEDEGVYTCEVDN   82 (97)
T ss_dssp             CSEEEETTSCEEEEEEEECSSCCCCEEEE-TTEECCCCTTSSEESCSSSTTSEEEES----SCCGGGCEEEEEEECC
T ss_pred             CCEEEecCCeEEEEEEEEEecCCEEEEEE-eeeeccccceeeeeeeeecCCCEEEEE----eccccccEEEEEEEEE
Confidence            56888999999999999999999999999 566654322100       01122222    2345788899999864

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=5.1e-07  Score=50.85  Aligned_cols=39  Identities=15%  Similarity=0.276  Sum_probs=34.0

Q ss_pred             CeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCc
Q psy16421        102 PIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKG  140 (151)
Q Consensus       102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~  140 (151)
                      |.+......+.+.+|+++.|.|.+.|.|.|.+.|+|++.
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~   40 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQG   40 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEET
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccc
Confidence            556667778889999999999999999999999998654

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.26  E-value=3.1e-07  Score=52.22  Aligned_cols=36  Identities=17%  Similarity=0.319  Sum_probs=31.0

Q ss_pred             CceeEeecCCcEEEEeee-cccCCCeeEEEcCCceec
Q psy16421        108 SQLIGAHEGQQLVLECIS-EAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~k~~~~~~  143 (151)
                      ...+.+.+|+.+.|.|.+ .|.|.|.+.|+|||..+.
T Consensus        11 ~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~   47 (105)
T d1cs6a2          11 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNF   47 (105)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCB
T ss_pred             CCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeecccc
Confidence            455789999999999997 689999999999987554

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=4.1e-07  Score=52.25  Aligned_cols=32  Identities=19%  Similarity=0.177  Sum_probs=27.6

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |.+++.+|+|.|+|.|.|..| ..+..+.|.|.
T Consensus        72 I~~v~~~D~G~Y~C~a~N~~G-~~~~~~~L~V~  103 (113)
T d2dava1          72 IIKAKDNFAGNYRCEVTYKDK-FDSCSFDLEVH  103 (113)
T ss_dssp             ECSCCTTSCEEEEEEEECSSC-EEEECCEEEEE
T ss_pred             EccCCHHHCeEEEEEEEeCCC-EEEEEEEEEEE
Confidence            578999999999999999999 56677788775

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.25  E-value=3.1e-07  Score=51.38  Aligned_cols=32  Identities=9%  Similarity=0.285  Sum_probs=25.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|+|.|.|..|......+.|.|
T Consensus        64 I~~~~~~D~G~Y~C~a~N~~G~~~~~tv~l~V   95 (97)
T d1epfa1          64 IYNANIDDAGIYKCVVTAEDGTQSEATVNVKI   95 (97)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEEEEEEEEE
T ss_pred             cccCchhhceEEEEEEEeCCCcEEEEEEEEEE
Confidence            57899999999999999998854455666665

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=3.3e-07  Score=50.52  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=27.4

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |.+++.+|+|.|.|+|.|..+...+..+.|+|.
T Consensus        53 i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~   85 (89)
T d1f2qa2          53 ITNATVEDSGTYYCTGKVWQLDYESEPLNITVI   85 (89)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEE
Confidence            467899999999999999887556677777775

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=9.7e-07  Score=48.67  Aligned_cols=41  Identities=17%  Similarity=0.228  Sum_probs=32.0

Q ss_pred             CeeeeCCceeEeecCCcEEEEeeec-ccCCCeeEEEcCCcee
Q psy16421        102 PIVKIPSQLIGAHEGQQLVLECISE-AYPKSVNYWTREKGDM  142 (151)
Q Consensus       102 p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~k~~~~~  142 (151)
                      +.+..+.....+..|+++.|.|.+. |.|.|.|+|++++..+
T Consensus         4 ~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~   45 (90)
T d1gsma1           4 LQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSL   45 (90)
T ss_dssp             EEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTT
T ss_pred             cEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeee
Confidence            3444445667788999999999875 8999999999976543

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.9e-07  Score=50.76  Aligned_cols=32  Identities=28%  Similarity=0.363  Sum_probs=27.0

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |.+++.+|+|.|+|.|.|..| ..+..+.|.|.
T Consensus        58 I~~v~~~d~G~Y~C~a~N~~g-~~~~~~~v~V~   89 (90)
T d1vcaa2          58 MNPVSFGNEHSYLCTATCESR-KLEKGIQVEIY   89 (90)
T ss_dssp             ESSCCGGGCSEEEEEEEETTE-EEEEEEEEEEE
T ss_pred             EecccccccceEEEEEEeCCC-EEEEEEEEEEE
Confidence            578999999999999999998 56777777663

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.3e-06  Score=46.39  Aligned_cols=59  Identities=14%  Similarity=0.233  Sum_probs=42.6

Q ss_pred             ceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         59 DIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      +..+.+|+++.|.|.+.|.|.|.+.|+++++.....      ...+.+.    .+...+.....|.+..
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~------~~~l~i~----~v~~~DsG~Y~C~a~N   66 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG------GKTLSVS----QLELQDSGTWTCTVLQ   66 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEE------SSEEEES----SCCGGGCEEEEEEEEE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeecccceee------eeeeeee----ecccccccEEEEEEEe
Confidence            346789999999999999999999999965544332      1223332    2456778889998864

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=4.4e-07  Score=51.66  Aligned_cols=39  Identities=15%  Similarity=0.198  Sum_probs=29.7

Q ss_pred             eCCceeEeecCCcEEEEeeecc-cC--CCeeEEEcCCceecc
Q psy16421        106 IPSQLIGAHEGQQLVLECISEA-YP--KSVNYWTREKGDMIA  144 (151)
Q Consensus       106 ~~~~~~~~~~g~~~~l~C~~~g-~p--~~~~~W~k~~~~~~~  144 (151)
                      +......+.+|+.+.|+|.+.| +|  .+.++|+|+|..+..
T Consensus         7 i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~   48 (106)
T d1zxqa1           7 LTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHY   48 (106)
T ss_dssp             EEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEE
T ss_pred             ecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeee
Confidence            3444456889999999999987 44  457999999877654

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.20  E-value=1.2e-06  Score=48.14  Aligned_cols=36  Identities=14%  Similarity=0.017  Sum_probs=28.2

Q ss_pred             CceeEeecCCcEEEEeeecc-cCCCeeEEEcCCceec
Q psy16421        108 SQLIGAHEGQQLVLECISEA-YPKSVNYWTREKGDMI  143 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~k~~~~~~  143 (151)
                      +....+.+|+.+.|.|.+.+ .|.+.+.|+|||..+.
T Consensus         9 ~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~   45 (89)
T d1fnla2           9 APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK   45 (89)
T ss_dssp             CSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEE
T ss_pred             CCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccc
Confidence            34455889999999999875 5566799999987654

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=4.7e-07  Score=50.08  Aligned_cols=39  Identities=21%  Similarity=0.326  Sum_probs=32.6

Q ss_pred             CCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCC
Q psy16421         48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG   88 (151)
Q Consensus        48 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~   88 (151)
                      .|.+...+  ....+.+|+.+.|.|.+.|.|.|.+.|++++
T Consensus         2 ~P~i~~~~--~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~   40 (92)
T d2ifga1           2 VPTLKVQV--PNASVDVGDDVLLRCQVEGRGLEQAGWILTE   40 (92)
T ss_dssp             CCEEEEEC--CSSCCBTTCCEEEEEEEECSSCCCCCEEESC
T ss_pred             CCEEEEeC--CCEEEeCCCEEEEeeeccCCCCcEEEEEECC
Confidence            35666555  5678889999999999999999999999954

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.19  E-value=7.9e-07  Score=49.62  Aligned_cols=73  Identities=18%  Similarity=0.442  Sum_probs=46.3

Q ss_pred             CCeeEeCCCCCceEeecC---CeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeC-CceeE---eecCCcEE
Q psy16421         48 PPDILDYPTSSDIMVREG---SNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIP-SQLIG---AHEGQQLV  120 (151)
Q Consensus        48 ~p~~~~~~~~~~~~~~~g---~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~-~~~~~---~~~g~~~~  120 (151)
                      +|.|...|  .+..+.+|   +++.|.|.+.|.|.|.+.|++ ++..+.....    ..+... .....   +...+...
T Consensus         4 ~P~f~~~P--~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~-ng~~i~~~~~----~~~~~~~~~~l~i~~~~~~d~G~   76 (97)
T d1cs6a1           4 GPVFEEQP--AHTLFPEGSAEEKVTLTCRARANPPATYRWKM-NGTELKMGPD----SRYRLVAGDLVISNPVKAKDAGS   76 (97)
T ss_dssp             EEEEEECC--CCEEEETTCSCCEEEECCEEEEESCCEEEEEE-TTEECCCSTT----SSEEEETTEEEEESCCHHHHCEE
T ss_pred             CCEEEEeC--CCEEEECccCCCeEEEEEEEEEeCCCEEEEEE-eeeeccCCCC----ceEEeeeeeEEEEecccccCCEE
Confidence            46676666  45555554   789999999999999999999 5666653221    111111 11111   23456788


Q ss_pred             EEeeecc
Q psy16421        121 LECISEA  127 (151)
Q Consensus       121 l~C~~~g  127 (151)
                      ..|.+..
T Consensus        77 Y~C~a~N   83 (97)
T d1cs6a1          77 YQCVATN   83 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9998763

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.6e-06  Score=48.98  Aligned_cols=43  Identities=9%  Similarity=0.195  Sum_probs=33.3

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ..||.|.....   ...++...+.|.+.|+|.|.+.|+|||..+..
T Consensus         2 ~~pP~it~~~~---~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~   44 (103)
T d1wwbx_           2 HFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNE   44 (103)
T ss_dssp             CCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECC
T ss_pred             ccCCeeEEcCC---CccceeEEEEEEEEEeCCCEEEEEECCEEeee
Confidence            45777754322   34678889999999999999999999877754

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.9e-06  Score=46.52  Aligned_cols=68  Identities=16%  Similarity=0.174  Sum_probs=42.9

Q ss_pred             CeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEE-EeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMW-RREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        49 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      |.+...|  ....+.+|+++.|.|.+.+.+.+...| ++ ++..+..     ....+.+.    .+...+.....|.+.+
T Consensus         2 P~It~~P--~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~-~~~~~~~-----~~~~l~i~----~v~~~d~G~Y~C~a~~   69 (82)
T d1f2qa1           2 PKVSLNP--PWNRIFKGENVTLTCNGNNFFEVSSTKWFH-NGSLSEE-----TNSSLNIV----NAKFEDSGEYKCQHQQ   69 (82)
T ss_dssp             CCCEEES--SCSEEETTCCEEEECCTTCC----CCEEEE-TTEECSC-----CSSEEEEC----SCCGGGCEEEEEECTT
T ss_pred             CEEEEcC--CCeEEeCCCeEEEEEEEeeeeeecceeeee-eeeeeec-----ccceeEEC----CCChhhCCcEEEEecC
Confidence            4555555  456788999999999999988776554 55 6655442     12234333    2556788899999865


Q ss_pred             c
Q psy16421        128 Y  128 (151)
Q Consensus       128 ~  128 (151)
                      .
T Consensus        70 s   70 (82)
T d1f2qa1          70 V   70 (82)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.15  E-value=2.6e-06  Score=47.46  Aligned_cols=63  Identities=19%  Similarity=0.367  Sum_probs=43.4

Q ss_pred             eEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCC------CCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV------PPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~------~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      ..+.+|+++.|.|.+.|.|.|.+.|++ +++.+........      .-.+.+.    .+...+.....|.+..
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~k-ng~~l~~~~~~~~~~~~~~~~~L~I~----~v~~~D~G~Y~C~a~N   83 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKVRNQHWSLIME----SVVPSDKGNYTCVVEN   83 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEE-TTEECCGGGSTTCCEEEGGGTEEEEC----SCCGGGCEEEEEEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEE-CCEeccccCceeeEEEcCCcEEEEEC----CCCcccCEEEEEEEEE
Confidence            467789999999999999999999999 6777654332110      0122222    2345677889998864

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.15  E-value=2.2e-06  Score=46.98  Aligned_cols=36  Identities=19%  Similarity=0.190  Sum_probs=28.3

Q ss_pred             ceeEeecCCcEEEEeeeccc-CCCeeEEEcCCceecc
Q psy16421        109 QLIGAHEGQQLVLECISEAY-PKSVNYWTREKGDMIA  144 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g~-p~~~~~W~k~~~~~~~  144 (151)
                      ....+.+|+++.|.|.+.+. |.+.+.|+|||..+..
T Consensus         8 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~   44 (88)
T d2fcba2           8 PHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF   44 (88)
T ss_dssp             SCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE
T ss_pred             CCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccc
Confidence            34458899999999999754 5567999999876543

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.6e-06  Score=48.11  Aligned_cols=45  Identities=22%  Similarity=0.316  Sum_probs=36.2

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecc-cCCC--eeEEEcCCceecc
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEA-YPKS--VNYWTREKGDMIA  144 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~--~~~W~k~~~~~~~  144 (151)
                      .|+.+.+.+....+.+|+.+.|+|.+.| .|.|  .+.|+|++..+..
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~   50 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKR   50 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccc
Confidence            5778888877778899999999999986 6665  4889999776643

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=5.5e-06  Score=45.17  Aligned_cols=65  Identities=22%  Similarity=0.324  Sum_probs=42.5

Q ss_pred             CceEeecCCeEEEEeeec-CCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAAS-GSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~-g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      ....+.+|+++.|.|.+. +.|.+.+.|+++ +..+.........-.+.+.    .+...+.....|.+..
T Consensus        10 ~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~-~~~~~~~~~~~~~~~L~i~----~v~~~d~G~Y~C~a~N   75 (89)
T d1gl4b_          10 RSQSVRPGADVTFICTAKSKSPAYTLVWTRL-HNGKLPSRAMDFNGILTIR----NVQPSDAGTYVCTGSN   75 (89)
T ss_dssp             CEEEECTTCCEEEEEEEEESSSCCEEEEEEG-GGBCCCTTEEEETTEEEEC----SCCGGGCEEEEEEEEC
T ss_pred             CeEEEeCCCcEEEEEEccCCCCCCEEEEecC-CceeeccccEeeceEEEEe----cCCcccCEEEEEEEEE
Confidence            567888999999999986 678899999994 4433221101111122222    2456788899999864

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.2e-06  Score=46.39  Aligned_cols=36  Identities=17%  Similarity=0.099  Sum_probs=28.3

Q ss_pred             CceeEeecCCcEEEEeeecccC-CCeeEEEcCCceec
Q psy16421        108 SQLIGAHEGQQLVLECISEAYP-KSVNYWTREKGDMI  143 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~k~~~~~~  143 (151)
                      +....+.+|+.+.|.|.+.+.+ +..+.|+|||..+.
T Consensus         7 ~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~   43 (89)
T d1f2qa2           7 ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK   43 (89)
T ss_dssp             ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECC
T ss_pred             CCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccc
Confidence            3445689999999999998764 45699999977654

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.2e-05  Score=45.65  Aligned_cols=76  Identities=16%  Similarity=0.257  Sum_probs=47.1

Q ss_pred             CeeEeCCCCCceEeecCCeEEEEeeecCCC---CCeEEEEeCCeeeEecc-cCC---------CCCCeeeeCCceeEeec
Q psy16421         49 PDILDYPTSSDIMVREGSNVSMRCAASGSP---PPSIMWRREGGEMITNS-FNN---------TVPPIVKIPSQLIGAHE  115 (151)
Q Consensus        49 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~---~~~~~W~~~~~~~~~~~-~~~---------~~~p~~~~~~~~~~~~~  115 (151)
                      +.|...|  ..+.+.+|+++.|.|.+.|.|   .|.+.|++ ++...... ...         ...........-..+..
T Consensus         5 ~~Fv~~P--~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   81 (110)
T d2avga1           5 GLFVMRP--QDGEVTVGGSITFSARVAGASLLKPPVVKWFK-GKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQP   81 (110)
T ss_dssp             CSEEECC--CCEEEETTSEEEEEEEEECCSCSSSCEEEEEC-STTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCT
T ss_pred             CEeEECC--CeEEEECCCCEEEEEeecCCCCCCCCEEEEEe-CceeeecccCCceeEeeeeeEEecccCEEEEEEeccCH
Confidence            5566666  678999999999999999988   57899999 44322111 100         00000011111223567


Q ss_pred             CCcEEEEeeecc
Q psy16421        116 GQQLVLECISEA  127 (151)
Q Consensus       116 g~~~~l~C~~~g  127 (151)
                      .+.....|.+..
T Consensus        82 ~D~G~Y~C~a~N   93 (110)
T d2avga1          82 AFTGGYRCEVST   93 (110)
T ss_dssp             TCCEEEEEEEEE
T ss_pred             HHCcEEEEEEEE
Confidence            889999999864

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=3.9e-07  Score=52.46  Aligned_cols=48  Identities=19%  Similarity=0.344  Sum_probs=36.6

Q ss_pred             CCCCCeeeeCCceeEeecCCcEEEEeeecccC-CCeeEEEcCCceeccCC
Q psy16421         98 NTVPPIVKIPSQLIGAHEGQQLVLECISEAYP-KSVNYWTREKGDMIANG  146 (151)
Q Consensus        98 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~k~~~~~~~~~  146 (151)
                      +..||.|.. +....+.+|+++.|.|.+.|.| .+.+.|++++..+....
T Consensus         4 V~~Pp~i~~-~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~   52 (115)
T d2crya1           4 VNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGT   52 (115)
T ss_dssp             CCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEE
T ss_pred             EecCCEEec-CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeee
Confidence            456777764 4456788999999999999965 55799999988776543

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=6.7e-07  Score=50.57  Aligned_cols=31  Identities=23%  Similarity=0.222  Sum_probs=24.8

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++++|+|.|+|.|.|..| ..+..+.|.|
T Consensus        66 i~~~~~~D~G~Y~C~a~N~~G-~~~~~~~v~V   96 (103)
T d1wwbx_          66 LDNPTHMNNGDYTLIAKNEYG-KDEKQISAHF   96 (103)
T ss_dssp             EESCCGGGCEEEEEEEECSSC-EEEEEEEECC
T ss_pred             ECCCCHHhCceEEEEEeccCC-EEEEEEEEEE
Confidence            467899999999999999998 4555555544

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=3.6e-06  Score=47.53  Aligned_cols=45  Identities=13%  Similarity=0.183  Sum_probs=31.0

Q ss_pred             CCCCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421         98 NTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus        98 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      +..||.+.....   ...+....+.|.+.|+|.|.+.|+|||..+..+
T Consensus         2 V~~PP~i~~~~~---~~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~   46 (105)
T d1wwca_           2 VYYPPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRES   46 (105)
T ss_dssp             CCCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEECCCS
T ss_pred             EEcCCeeEEeCC---CEEEEEEEEEEEEEEeCCCeEEEEeCccccCCC
Confidence            345666643322   124455668889999999999999998766543

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=3.5e-07  Score=49.86  Aligned_cols=57  Identities=16%  Similarity=0.202  Sum_probs=41.6

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      ..+.+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....            ....+...+.....|.+..
T Consensus        12 ~~~~~~~G~~~~l~C~a~G~P~P~v~W~k-~g~~~~~~~------------~~~~v~~~d~G~Y~C~A~N   68 (84)
T d2oz4a3          12 GNWTWPENSQQTPMCQAWGNPLPELKCLK-DGTFPLPIG------------ESVTVTRDLEGTYLCRARS   68 (84)
T ss_dssp             SEEEEETTCEECCCCCCEEESCCEEEEEE-TTTEECCTT------------SCEECCGGGCEEEEEEEEE
T ss_pred             ccEEEeCCCEEEEEEEEeEcCccEEEEEE-eeccceeee------------eeeccccCCCCEEEEEEEc
Confidence            56788899999999999999999999999 454433211            1112345677788999864

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=4.6e-06  Score=46.98  Aligned_cols=68  Identities=12%  Similarity=0.187  Sum_probs=42.6

Q ss_pred             CceEeecCCeEEEEeeecCCC-CCeEEEEeCCeeeEecccCCCCCCeeeeC-------CceeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAASGSP-PPSIMWRREGGEMITNSFNNTVPPIVKIP-------SQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~-~~~~~W~~~~~~~~~~~~~~~~~p~~~~~-------~~~~~~~~g~~~~l~C~~~g  127 (151)
                      ....+..|+++.|.|.+.|.| .|.+.|++++.........  ........       .....+...+.....|.+..
T Consensus        11 ~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   86 (104)
T d2aw2a1          11 SEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLED--RQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANF   86 (104)
T ss_dssp             EEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCS--SCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccce--eeeeEEecCCceEEEEEEccccHHHCCeEEEEEEc
Confidence            456788999999999999988 5899999954433332111  00011100       00112456788999999864

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.05  E-value=5.3e-07  Score=51.77  Aligned_cols=34  Identities=26%  Similarity=0.530  Sum_probs=28.6

Q ss_pred             eeEeecCCcEEEEeee-cccCCCeeEEEcCCceec
Q psy16421        110 LIGAHEGQQLVLECIS-EAYPKSVNYWTREKGDMI  143 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~-~g~p~~~~~W~k~~~~~~  143 (151)
                      ..++.+|+.+.|.|.+ .|.|.|.+.|+|++..+.
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~   45 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGAD   45 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSC
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCcccc
Confidence            3457799999999997 899999999999876543

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=5.3e-06  Score=46.00  Aligned_cols=42  Identities=14%  Similarity=0.279  Sum_probs=31.8

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      +|.+..  ....+.+|+++.|+|.+.+ |++.+.|+|+|..+..+
T Consensus         5 ~P~i~~--~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~   46 (96)
T d1l6za2           5 QPFLQV--TNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLT   46 (96)
T ss_dssp             CCCEEC--SCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCC
T ss_pred             CCeEEc--CceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccc
Confidence            345543  4456899999999999877 56889999998766543

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2.9e-06  Score=46.85  Aligned_cols=37  Identities=16%  Similarity=0.288  Sum_probs=30.8

Q ss_pred             ceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccCC
Q psy16421        109 QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG  146 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~~  146 (151)
                      ....+.+|+++.|.|.+.| |+|.+.|+++|..+..+.
T Consensus         5 ~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~   41 (92)
T d1olza1           5 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAES   41 (92)
T ss_dssp             EEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCS
T ss_pred             hheeEeCCCEEEEEEEeec-cCCceeeecCcccceeee
Confidence            3467899999999999998 778999999987776543

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.01  E-value=4.3e-06  Score=47.34  Aligned_cols=40  Identities=18%  Similarity=0.350  Sum_probs=32.4

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeC
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRRE   87 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~   87 (151)
                      .+|.+.... ++.+++.+|+++.|.|.+.|.|.|.+.|+++
T Consensus         3 ~~P~i~~~~-P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~   42 (109)
T d2fdbp2           3 HRPILQAGL-PANASTVVGGDVEFVCKVYSDAQPHIQWIKH   42 (109)
T ss_dssp             SCCEECTTC-SCCEEECTTCCEEEEEEEECSSCCEEEEEEE
T ss_pred             CCCEEcCCC-CCCEEEecCCcEEEEEEEEEcCCCeEEEEec
Confidence            346664432 2678999999999999999999999999984

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=8.2e-07  Score=50.32  Aligned_cols=31  Identities=19%  Similarity=0.208  Sum_probs=24.7

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|+|.|.|..| ..+..+.|.|
T Consensus        66 i~~~~~~D~G~Y~C~a~N~~G-~~~~~~~v~V   96 (105)
T d1wwca_          66 FNKPTHYNNGNYTLIAKNPLG-TANQTINGHF   96 (105)
T ss_dssp             EESCCGGGCEEEEEEEEETTE-EEEEEEEECC
T ss_pred             EeecccccceEEEEEEEcCCC-EEEEEEEEEE
Confidence            467899999999999999988 5555555554

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=5.3e-06  Score=46.89  Aligned_cols=43  Identities=23%  Similarity=0.506  Sum_probs=32.4

Q ss_pred             CeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEe
Q psy16421         49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMIT   93 (151)
Q Consensus        49 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~   93 (151)
                      |.+..+.. ..+.+..|+++.|.|.+.|.|.|.+.|++ ++..+.
T Consensus         2 P~i~~p~~-~~i~v~~G~~v~l~C~v~g~P~p~i~W~~-~g~~i~   44 (107)
T d1iray3           2 PVIVSPAN-ETMEVDLGSQIQLICNVTGQLSDIAYWKW-NGSVID   44 (107)
T ss_dssp             CEEEECCS-EEEECCTTCCEEEEEEEEECTTCEEEEEE-TTEECC
T ss_pred             CCEEEECC-CEEEEeCCCEEEEEEEeccCCCCeEEEEE-CCcccc
Confidence            44444331 34567789999999999999999999999 566654

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.6e-06  Score=48.81  Aligned_cols=32  Identities=19%  Similarity=0.317  Sum_probs=26.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |.+++.+|+|.|+|.|.|..| .....+.|.|.
T Consensus        63 I~~v~~~D~G~Y~C~a~N~~g-~~~~~~~L~V~   94 (101)
T d1iray1          63 FVPAKVEDSGHYYCVVRNSSY-CLRIKISAKFV   94 (101)
T ss_dssp             ETTCCGGGCEEEEEEEEETTE-EEEEEEEEEEE
T ss_pred             eccceecCCEEEEEEEECCCC-eEEEEEEEEEE
Confidence            578999999999999999988 55566777764

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=5.1e-06  Score=47.06  Aligned_cols=69  Identities=14%  Similarity=0.263  Sum_probs=40.7

Q ss_pred             ceEeecCCeEEEEeeecC-CC--CCeEEEEeCCeeeEecccCCC--CCC-eeeeCCceeEeecCCcEEEEeeeccc
Q psy16421         59 DIMVREGSNVSMRCAASG-SP--PPSIMWRREGGEMITNSFNNT--VPP-IVKIPSQLIGAHEGQQLVLECISEAY  128 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g-~~--~~~~~W~~~~~~~~~~~~~~~--~~p-~~~~~~~~~~~~~g~~~~l~C~~~g~  128 (151)
                      ...+.+|+.+.|.|.+.| .|  .+.+.|++ |++.+.......  ... ............+.+...++|.|...
T Consensus        11 p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~-~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~   85 (106)
T d1zxqa1          11 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFR-GNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLD   85 (106)
T ss_dssp             SSEECTTSEEEEEEEECSCBCGGGEEEEEEE-TTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             CCEEeCCCEEEEEEEEeCcccCCCceEEEEc-CCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEec
Confidence            346778999999999976 44  45799999 677665432211  111 11100111112356667999998753

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=1.5e-05  Score=45.18  Aligned_cols=66  Identities=18%  Similarity=0.255  Sum_probs=40.1

Q ss_pred             EeecCCeEEEEeee-cCCCCCeEEEEeCCeeeEecccC--C--CCCCeeeeC--Cce---eEeecCCcEEEEeeecc
Q psy16421         61 MVREGSNVSMRCAA-SGSPPPSIMWRREGGEMITNSFN--N--TVPPIVKIP--SQL---IGAHEGQQLVLECISEA  127 (151)
Q Consensus        61 ~~~~g~~~~l~C~~-~g~~~~~~~W~~~~~~~~~~~~~--~--~~~p~~~~~--~~~---~~~~~g~~~~l~C~~~g  127 (151)
                      .+.+|+.+.|.|.+ .|.|.+.+.|++ +++.+.....  .  .........  ...   ..+...+.....|.+..
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N   88 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFK-DGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQN   88 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEE-TTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEEC
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEe-CCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEE
Confidence            57789999999997 479999999999 5555443221  0  000111111  111   12445677899999864

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1e-06  Score=50.10  Aligned_cols=31  Identities=23%  Similarity=0.313  Sum_probs=24.5

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.++..+|+|.|+|.|.|..| .....+.|.|
T Consensus        67 i~~~~~~D~G~Y~C~A~N~~G-~~~~~i~v~v   97 (107)
T d1he7a_          67 LNQPTHVNNGNYTLLAANPFG-QASASIMAAF   97 (107)
T ss_dssp             EESCCGGGCEEEEEEEEETTE-EEEEEEEECC
T ss_pred             ECcccHHHCcEEEEEEEeCCC-EEEEEEEEEE
Confidence            467889999999999999998 4555555544

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=9e-06  Score=45.36  Aligned_cols=39  Identities=23%  Similarity=0.521  Sum_probs=32.2

Q ss_pred             CCeeEeCCCCCceEeecCCeEEEEeeecCCCCC-eEEEEeCC
Q psy16421         48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPP-SIMWRREG   88 (151)
Q Consensus        48 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~-~~~W~~~~   88 (151)
                      ||.+...+  ....+.+|+.+.|.|.+.|.|.+ .+.|++.+
T Consensus         2 PP~i~~~~--~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~   41 (101)
T d3b5ha1           2 PPRVKAVK--SSEHINEGETAMLVCKSESVPPVTDWAWYKIT   41 (101)
T ss_dssp             SCCCEESC--SEEEECTTSCEEEEEECCCSSCCCEEEEEECC
T ss_pred             CceEEEcC--CcEEECcCCeEEEEEEEEecCCeeEEEEEecc
Confidence            67776665  56788899999999999999877 69999843

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=4.1e-06  Score=46.22  Aligned_cols=21  Identities=24%  Similarity=0.556  Sum_probs=19.4

Q ss_pred             CccccccCCeEEEEEEEcCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVP   21 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~   21 (151)
                      |.+++++|+|.|+|.|.|..+
T Consensus        54 I~~v~~~DsG~Y~C~A~n~~g   74 (92)
T d1olza1          54 IFNLSEGDSGVYQCLSEERVK   74 (92)
T ss_dssp             ECSCCGGGCEEEEEEEEEECS
T ss_pred             ECCCCHHHCcEEEEEEEEcCC
Confidence            578999999999999999887

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.88  E-value=3.3e-06  Score=49.09  Aligned_cols=32  Identities=19%  Similarity=0.292  Sum_probs=25.2

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ   33 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   33 (151)
                      |.+++.+|+|.|.|.+.+..+ .....+.|.|.
T Consensus        85 I~~v~~~D~G~Y~C~v~~~~~-~~~~~v~L~V~  116 (126)
T d1pkoa_          85 IQNVRFSDEGGYTCFFRDHSY-QEEAAVELKVE  116 (126)
T ss_dssp             ESSCCGGGCEEEEEEEEETTE-EEEEEEEEEEE
T ss_pred             EEEEchhHCeEEEEEEEECCC-EEEEEEEEEEe
Confidence            678999999999999998766 44555666664

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=6.2e-06  Score=46.27  Aligned_cols=35  Identities=23%  Similarity=0.587  Sum_probs=28.5

Q ss_pred             ceEeecCCeEEEEeee-cCCCCCeEEEEeCCeeeEec
Q psy16421         59 DIMVREGSNVSMRCAA-SGSPPPSIMWRREGGEMITN   94 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~-~g~~~~~~~W~~~~~~~~~~   94 (151)
                      ...+.+|+.+.|.|.+ .|.|.+.+.|++ +++.+..
T Consensus        11 ~~~v~~G~~v~l~C~~~~g~p~p~v~W~~-~~~~i~~   46 (104)
T d1nbqa2          11 PSSATIGNRAVLTCSEQDGSPPSEYTWFK-DGIVMPT   46 (104)
T ss_dssp             BSEEETTSCEEECCCCCSCBSCCEEEEEE-TTCCCCS
T ss_pred             CCEEecCCcEEEEEEeecCCCCCEEEEEE-CCEEccC
Confidence            4567889999999997 589999999999 5655543

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=3.4e-05  Score=43.30  Aligned_cols=74  Identities=16%  Similarity=0.324  Sum_probs=45.4

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecC-CCCC--eEEEEeCCeeeEecccCCCCC--CeeeeCCceeEeecCCcEEE
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASG-SPPP--SIMWRREGGEMITNSFNNTVP--PIVKIPSQLIGAHEGQQLVL  121 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~~~--~~~W~~~~~~~~~~~~~~~~~--p~~~~~~~~~~~~~g~~~~l  121 (151)
                      .|+.+...+  ....+.+|+.+.|.|.+.| .|.+  .+.|++ +++.+.........  ..+.+    ......+...+
T Consensus         3 ~P~~v~i~p--~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~-~~~~l~~~~~~~~~~~s~l~i----~~~~~dd~g~y   75 (103)
T d1iama1           3 TPERVELAP--LPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLR-GEKELKREPAVGEPAEVTTTV----LVRRDHHGAQF   75 (103)
T ss_dssp             CCSEEEECC--CCSEECTTSEEEEEEEEECCBCGGGEEEEEEE-TTEEEEEEECCTTTEEEEEEE----ECCSSCSSCEE
T ss_pred             CCCceEEeC--CCceEeCCCEEEEEEEecCCCCCCceEEEEcc-ccccccccccccccceEEEEE----eeehhHCCCEE
Confidence            355555555  3456788999999999876 5655  578999 56666543211111  11111    12345677789


Q ss_pred             Eeeecc
Q psy16421        122 ECISEA  127 (151)
Q Consensus       122 ~C~~~g  127 (151)
                      +|.|..
T Consensus        76 tC~A~n   81 (103)
T d1iama1          76 SCRTEL   81 (103)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999863

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=3.5e-06  Score=49.08  Aligned_cols=35  Identities=23%  Similarity=0.573  Sum_probs=29.9

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMIT   93 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~   93 (151)
                      ..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+.
T Consensus        17 ~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~-~~~~~   51 (130)
T d1gxea_          17 DTIVVVAGNKLRLDVPISGDPAPTVIWQKA-ITQGN   51 (130)
T ss_dssp             CEEEESSSSCCCCEEECCSBSCCEEEEEEE-CCCSC
T ss_pred             CCEEEEcCCeEEEEEEEEEecCCeEEEeeC-CeEcc
Confidence            578899999999999999999999999994 44443

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.4e-05  Score=44.11  Aligned_cols=74  Identities=11%  Similarity=0.214  Sum_probs=46.0

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC------CCCeeeeCCceeEeecCCcEE
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT------VPPIVKIPSQLIGAHEGQQLV  120 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~------~~p~~~~~~~~~~~~~g~~~~  120 (151)
                      .+|.|..... ....+.+|+.+.|.|.+.+ |.+.+.|++ +++.+..+....      ..-.+.+.    .+...+...
T Consensus         4 ~~~~f~~~l~-~~~~v~~G~~v~l~c~v~~-p~~~v~W~k-~g~~i~~~~~~~~~~~~~~~~~L~I~----~~~~~D~G~   76 (94)
T d1pd6a_           4 KSTAFQKKLE-PAYQVSKGHKIRLTVELAD-HDAEVKWLK-NGQEIQMSGSKYIFESIGAKRTLTIS----QCSLADDAA   76 (94)
T ss_dssp             TTSSCSEECC-SEEEEETTSCEEEEEECSS-SSSCCEEEE-SSSEECCCSSSSEEEEETTEEEEEEC----SCSSSSCEE
T ss_pred             CCCcEEEeCC-CCEEECcCCeEEEEEEECC-CCceEEEEE-cCccceeeeeeEeeeccCCeEEeecC----CCCceecEE
Confidence            4566655442 3457889999999999865 889999999 666665322100      00011111    245677788


Q ss_pred             EEeeecc
Q psy16421        121 LECISEA  127 (151)
Q Consensus       121 l~C~~~g  127 (151)
                      .+|.+..
T Consensus        77 Y~c~a~n   83 (94)
T d1pd6a_          77 YQCVVGG   83 (94)
T ss_dssp             EEEEETT
T ss_pred             EEEEEee
Confidence            8888743

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.82  E-value=2.2e-05  Score=44.22  Aligned_cols=65  Identities=14%  Similarity=0.179  Sum_probs=42.8

Q ss_pred             CceEeecCCeEEEEeee-cCCCCCeEEEEeCCeeeEecccC-----CCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAA-SGSPPPSIMWRREGGEMITNSFN-----NTVPPIVKIPSQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~-~g~~~~~~~W~~~~~~~~~~~~~-----~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  127 (151)
                      ..+.+.+|+++.|.|.+ .+.|.+.+.|++ +++.+.....     ....-.|.+.    .+...+.....|.+..
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k-~g~~~~~~~~~~~~~~~~~~~L~I~----~v~~~D~G~Y~C~a~N   82 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLL-NEFPNFIPADGRRFVSQTTGNLYIA----KTEASDLGNYSCFATS   82 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEE-SSTTCBCCCCSSEEECTTTCCEEES----SCCGGGCEEEEEEEEE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEE-eeccccccccceeeeecCCCEEeec----ccccccCcEEEEEEEE
Confidence            45789999999999997 788999999999 4544332110     0001112221    2456788899999864

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.81  E-value=1.4e-05  Score=44.63  Aligned_cols=70  Identities=20%  Similarity=0.330  Sum_probs=43.8

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccC-----CCCCCeeeeCCcee---EeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN-----NTVPPIVKIPSQLI---GAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~-----~~~~p~~~~~~~~~---~~~~g~~~~l~C~~~g  127 (151)
                      ..+.+.+|+++.|.|.+.|.|.|.+.|++.++........     ..............   .+...+.....|.+..
T Consensus         9 ~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n   86 (102)
T d1f97a1           9 SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSE   86 (102)
T ss_dssp             SEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEE
T ss_pred             CcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEE
Confidence            4578889999999999999999999999854443332110     01111111111111   2456888899999763

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=7e-06  Score=46.28  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=19.0

Q ss_pred             CccccccCCeEEEEEEEcCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVP   21 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~   21 (151)
                      |.+++.+|+|.|+|.|.|..+
T Consensus        62 I~~v~~~D~G~Y~C~a~n~~~   82 (103)
T d1iray2          62 VMNVAEKHRGNYTCHASYTYL   82 (103)
T ss_dssp             ESSCCGGGCEEEEEEEEEEET
T ss_pred             EcccccccCcEEEEEEEECcC
Confidence            578999999999999999776

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.80  E-value=1.3e-05  Score=43.42  Aligned_cols=68  Identities=21%  Similarity=0.288  Sum_probs=46.4

Q ss_pred             CCeeEeCCCCCceEeecCCeEEEEeeecCCCCC-eEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeec
Q psy16421         48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPP-SIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISE  126 (151)
Q Consensus        48 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~-~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~  126 (151)
                      +|.+...|  ....+.+|+++.|.|.+.+.+.+ .+.|++ +++.+....     ..+.+    ..+...+.....|.+.
T Consensus         4 kp~i~~~P--~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~-~g~~~~~~~-----~~l~i----~~v~~~dsG~Y~C~a~   71 (85)
T d2fcba1           4 KAVLKLEP--QWINVLQEDSVTLTCRGTHSPESDSIQWFH-NGNLIPTHT-----QPSYR----FKANNNDSGEYTCQTG   71 (85)
T ss_dssp             BCEEEEES--CCSEEETTCEEEEEEECSSCCCTTCCEEEE-TTEECTTCC-----SSEEE----EECCGGGCEEEEEECT
T ss_pred             CCEEEECC--CCeEEcCCCeEEEEEEEeeccceeEEEeec-ccccccccc-----cceEE----eeccccCCcEEEEECC
Confidence            45555555  46788999999999999998866 567777 666654321     12222    2355678889999986


Q ss_pred             c
Q psy16421        127 A  127 (151)
Q Consensus       127 g  127 (151)
                      +
T Consensus        72 n   72 (85)
T d2fcba1          72 Q   72 (85)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=1.7e-05  Score=43.87  Aligned_cols=34  Identities=15%  Similarity=0.159  Sum_probs=28.5

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEE
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYW  135 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W  135 (151)
                      +|.|. .+..+.+.+|+++.|.|.+.|.|.|.+.|
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~   35 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRL   35 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEE
Confidence            57776 57788999999999999999999886443

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.6e-05  Score=44.72  Aligned_cols=34  Identities=12%  Similarity=0.088  Sum_probs=29.0

Q ss_pred             eEeecCCcEEEEe------eecccCCCeeEEEcCCceecc
Q psy16421        111 IGAHEGQQLVLEC------ISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       111 ~~~~~g~~~~l~C------~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      ..+..|....|.|      .+.|.|.|.+.|+|||..+..
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~   48 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL   48 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCC
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccC
Confidence            4578999999999      567999999999999777654

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.76  E-value=1.3e-05  Score=44.72  Aligned_cols=32  Identities=16%  Similarity=0.298  Sum_probs=24.9

Q ss_pred             CccccccCCeEEEEEEEcCCCCC-CccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPS-VSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v   32 (151)
                      |.+++.+|+|.|+|.+.+..|.. ....+.|.|
T Consensus        64 I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~V   96 (98)
T d1hnga1          64 IKNLTRDDSGTYNVTVYSTNGTRILNKALDLRI   96 (98)
T ss_dssp             ESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEE
T ss_pred             EeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEEE
Confidence            67999999999999999988742 244555655

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=1.2e-05  Score=45.52  Aligned_cols=33  Identities=9%  Similarity=0.146  Sum_probs=24.1

Q ss_pred             EeecCCcEE---EEeeecccCCCeeEEEcCCceecc
Q psy16421        112 GAHEGQQLV---LECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       112 ~~~~g~~~~---l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      .+..|....   +.|.+.|+|.|.+.|+|||..+..
T Consensus         8 ~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~   43 (107)
T d1he7a_           8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNE   43 (107)
T ss_dssp             CCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCC
T ss_pred             EECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccC
Confidence            344444444   555899999999999999877654

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=2.3e-05  Score=43.88  Aligned_cols=31  Identities=26%  Similarity=0.637  Sum_probs=27.5

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCC
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREG   88 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~   88 (151)
                      ..+.+.+|+++.|.|.+.|.|.|.+.|++++
T Consensus        12 ~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~   42 (105)
T d1nbqa1          12 PEVRIPENNPVKLSCAYSGFSSPRVEWKFDQ   42 (105)
T ss_dssp             SBCCEETTCCCEEECEEESCSSEEEEEEEEE
T ss_pred             CeEEEeCCCeEEEEEEeCCCCCCeeEEEeee
Confidence            4567889999999999999999999999943

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=3.7e-05  Score=41.95  Aligned_cols=66  Identities=17%  Similarity=0.319  Sum_probs=42.8

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeC-----CceeEeecCCcEEEEeeecc
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIP-----SQLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~~~g~~~~l~C~~~g  127 (151)
                      .+..+.+|+.+.|.|.+. .|.+.+.|++ +++++.......  -.+...     ..-..+...+.....|.+..
T Consensus         8 ~~~~v~~G~~v~l~C~v~-~p~~~v~W~k-~~~~~~~~~~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   78 (90)
T d1x44a1           8 EDTTAYCGERVELECEVS-EDDANVKWFK-NGEEIIPGPKSR--YRIRVEGKKHILIIEGATKADAAEYSVMTTG   78 (90)
T ss_dssp             CCEEEETTEEEEEEEECS-SSSCCCEEEE-TTEECCCSTTCS--EEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             CCEEEeCCCcEEEEEEEC-CCCceEEEEE-eecccCCCCCcc--EEEEEeCCccEEEECccccccCEEEEEEEec
Confidence            678899999999999985 5888999999 566654322100  011110     11223566788888888743

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.58  E-value=6.9e-06  Score=46.92  Aligned_cols=67  Identities=12%  Similarity=0.237  Sum_probs=40.6

Q ss_pred             eEeecCCeEEEEeee-cCCCCCeEEEEeCCeeeEecccC-CCCCCeeeeCC-c-----e-eEeecCCcEEEEeeecc
Q psy16421         60 IMVREGSNVSMRCAA-SGSPPPSIMWRREGGEMITNSFN-NTVPPIVKIPS-Q-----L-IGAHEGQQLVLECISEA  127 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~-~g~~~~~~~W~~~~~~~~~~~~~-~~~~p~~~~~~-~-----~-~~~~~g~~~~l~C~~~g  127 (151)
                      .++.+|+++.|.|.+ .|.|.|.+.|+++ +..+..... ......+.... .     . .....|+.....|.|..
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N   87 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKR-LSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKN   87 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEE-ETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEEC
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeC-CccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEe
Confidence            346789999999996 8999999999994 444332211 11111111111 1     1 11235778899999864

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=97.52  E-value=1.1e-05  Score=44.18  Aligned_cols=63  Identities=16%  Similarity=0.158  Sum_probs=41.2

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCC-----CCCCeeeeCCceeEeecCCcEEEEeeec
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN-----TVPPIVKIPSQLIGAHEGQQLVLECISE  126 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~~~~g~~~~l~C~~~  126 (151)
                      .++.+.+|+++.|.|.+. .|.|.+.|++ |++.+....+.     .....+.+.    .+...+....+|.+.
T Consensus         9 ~d~~v~~G~~~~~~c~vs-~p~~~v~W~k-~g~~i~~~~~~~~~~~~~~~~L~I~----~~~~~D~G~Y~c~a~   76 (89)
T d1tiua_           9 YGVEVFVGETAHFEIELS-EPDVHGQWKL-KGQPLTASPDCEIIEDGKKHILILH----NCQLGMTGEVSFQAA   76 (89)
T ss_dssp             CCEEEETTSCCCEEEBCS-SSSCCCBCCS-SSCCCCSSSSCEEEECSSCEEEECC----SCCSCCCSEECCBCS
T ss_pred             cCEEEeCCCcEEEEEEEC-CCCcEEEEEE-eeeecccceeEEEEeeceeEEEEEc----CCChhcCEEEEEEEC
Confidence            678999999999999984 6889999999 67666543320     001111111    134566677778764

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00019  Score=39.48  Aligned_cols=41  Identities=29%  Similarity=0.579  Sum_probs=30.1

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      .+||.+.+..    ...++.+.|.|.+.| +|.. .++|++||..+.
T Consensus         2 ~vpP~V~v~~----~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~   44 (94)
T d1de4a1           2 QVPPLVKVTH----HVTSSVTTLRCRALNYYPQNITMKWLKDKQPMD   44 (94)
T ss_dssp             CBCCEEEEEE----EECSSCEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCCCEEEEEE----cCCCCCEEEEEEEeeEECCCCEEEEEECCEECc
Confidence            4677776532    235678899999999 6765 599999987764

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=9.2e-05  Score=41.27  Aligned_cols=36  Identities=11%  Similarity=0.157  Sum_probs=29.1

Q ss_pred             CceeEeecCCcEEEEeeec-ccCCCeeEEEcCCceec
Q psy16421        108 SQLIGAHEGQQLVLECISE-AYPKSVNYWTREKGDMI  143 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~k~~~~~~  143 (151)
                      +....+.+|+.+.|.|.+. +.|.+.+.|+|+|..+.
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~   45 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTP   45 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSB
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccc
Confidence            3445678899999999885 78899999999886554

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00083  Score=36.80  Aligned_cols=70  Identities=14%  Similarity=0.307  Sum_probs=42.5

Q ss_pred             cCCeEEEEeeecC-CCCCeEEEEeCCeeeEecccC----CCCCCeeeeCCceeEeecCCcEEEEeeecccC--CCe-eEE
Q psy16421         64 EGSNVSMRCAASG-SPPPSIMWRREGGEMITNSFN----NTVPPIVKIPSQLIGAHEGQQLVLECISEAYP--KSV-NYW  135 (151)
Q Consensus        64 ~g~~~~l~C~~~g-~~~~~~~W~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~-~~W  135 (151)
                      .++.+.|.|.+.| .|.+.+.|++ +++.+.....    ....-.+.+. +...+.......++|.+...-  .+. +.|
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~-n~~~~~~~~~~~~~~~~~g~y~v~-S~L~v~~~~~~~~tC~V~h~~l~~~~~~~w   92 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLE-NGEELNAINTTVSQDPETELYAVS-SKLDFNMTTNHSFMCLIKYGHLRVNQTFNW   92 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEE-SSCEECCSEEEEEECTTTCCEEEE-EEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             CCCEEEEEEEECcccCCCEEEEec-CCcEecccceeeEecCCCccEEEE-EEEEccCCccceEEEEEEecCCCCcEEEEc
Confidence            4678899999877 7988999999 5666543221    0000112211 223355667789999987433  233 666

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00012  Score=40.80  Aligned_cols=44  Identities=16%  Similarity=0.291  Sum_probs=30.7

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeeccc-CCC-eeEEEcCCceec
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEAY-PKS-VNYWTREKGDMI  143 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~k~~~~~~  143 (151)
                      ..+|.+.+-+. ..+..|+.+.|.|.+.|. |.. .++|++||..+.
T Consensus         3 ~~~P~V~v~~~-~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~   48 (100)
T d1k5nb_           3 QRTPKIQVYSR-HPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIE   48 (100)
T ss_dssp             CBCCEEEEEES-SCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECT
T ss_pred             cCCCeeEEEcC-CcccCCCCEEEEEEECccCCCCcEEEEEECCEecC
Confidence            34666655321 124678999999999994 554 499999987664

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=0.00013  Score=42.12  Aligned_cols=37  Identities=22%  Similarity=0.262  Sum_probs=32.7

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +|.+...|..+.+.+|+++.|.|.+.+.....+.|+|
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyr   37 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLF   37 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEE
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEE
Confidence            4778888899999999999999999887777899986

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=9.8e-05  Score=40.72  Aligned_cols=31  Identities=13%  Similarity=0.331  Sum_probs=25.8

Q ss_pred             ecCCcEEEEeeecc-cCCCeeEEEcCCceecc
Q psy16421        114 HEGQQLVLECISEA-YPKSVNYWTREKGDMIA  144 (151)
Q Consensus       114 ~~g~~~~l~C~~~g-~p~~~~~W~k~~~~~~~  144 (151)
                      ..++.+.|.|.+.| +|.+.+.|++||..+..
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~   45 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNA   45 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECC
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecc
Confidence            35788899999997 79899999999876643

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.39  E-value=0.00011  Score=40.88  Aligned_cols=42  Identities=19%  Similarity=0.294  Sum_probs=29.7

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeeccc-CC-CeeEEEcCCceec
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAY-PK-SVNYWTREKGDMI  143 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~k~~~~~~  143 (151)
                      ||.+.+-+.. .+..|+.+.|.|.+.|. |. ..++|++||..+.
T Consensus         3 pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~   46 (100)
T d1muja1           3 APQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVA   46 (100)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCC
T ss_pred             CCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeecc
Confidence            5665553322 35678899999999994 54 4599999986654

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=5.2e-05  Score=43.10  Aligned_cols=47  Identities=21%  Similarity=0.421  Sum_probs=34.6

Q ss_pred             eecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCC-CCeEEEEeCCeeeEe
Q psy16421         43 YTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSP-PPSIMWRREGGEMIT   93 (151)
Q Consensus        43 ~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~-~~~~~W~~~~~~~~~   93 (151)
                      |++..||.+...   ....+.+|+.+.|.|.+.+.+ .+.+.|++ +++.+.
T Consensus         2 L~V~~Pp~i~~~---~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~-~~~~i~   49 (115)
T d2crya1           2 LTVNGPPIISST---QTQHALHGEKGQIKCFIRSTPPPDRIAWSW-KENVLE   49 (115)
T ss_dssp             CCCCSSCCEEEE---CCCCCCTTSCCCCCEEECCSSCCSEEEEES-SSCEEC
T ss_pred             eEEecCCEEecC---CCEEEecCCEEEEEEEeecCCCeeEEEEee-eeeeEe
Confidence            455678877653   356678899999999998854 55788998 555554

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.32  E-value=0.00021  Score=39.78  Aligned_cols=44  Identities=23%  Similarity=0.372  Sum_probs=30.5

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      .++|.+.+.+.. .+..|+...|.|.+.| +|.. .++|++||..+.
T Consensus         3 ~v~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~   48 (101)
T d1fnga1           3 NVAPEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVT   48 (101)
T ss_dssp             CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             CcCCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecC
Confidence            356766653221 2456788899999999 4654 599999987654

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00046  Score=37.79  Aligned_cols=41  Identities=29%  Similarity=0.475  Sum_probs=29.3

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      .||.+.+..   ....|+.+.|.|.+.| +|.. .++|++||..+.
T Consensus         2 ~PP~V~v~~---~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~   44 (94)
T d1t7va1           2 DPPSVVVTS---HQAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQE   44 (94)
T ss_dssp             BCCEEEEEE---EECTTSCEEEEEEEEEEBSSCEEEEEEETTEECC
T ss_pred             cCCEeEEec---cCCCCCCEEEEEEEEeEECCCCEEEEEECCEECC
Confidence            356666532   2245889999999999 6664 499999986553

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00016  Score=40.43  Aligned_cols=21  Identities=14%  Similarity=0.313  Sum_probs=18.3

Q ss_pred             CccccccCCeEEEEEEEcCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVP   21 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~   21 (151)
                      |.+++.+|+|.|.|.+.+..+
T Consensus        69 I~~v~~~D~G~Y~C~V~~~~~   89 (105)
T d1dr9a1          69 ILALRPSDEGTYECVVLKYEK   89 (105)
T ss_dssp             ECSCCGGGCEEEEEEEEECCT
T ss_pred             ECcCChHHCeEEEEEEEeCCC
Confidence            678999999999999987654

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.0003  Score=38.98  Aligned_cols=44  Identities=14%  Similarity=0.234  Sum_probs=29.9

Q ss_pred             CCCCeeeeCCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421         99 TVPPIVKIPSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus        99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      +.+|.+.+.+.. ....|+.+.|.|.+.| +|.. .++|++||..+.
T Consensus         2 ~~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~   47 (99)
T d1lk2b_           2 QKTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIP   47 (99)
T ss_dssp             CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECT
T ss_pred             CCCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecC
Confidence            346666543221 2356888999999999 5554 499999986553

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.13  E-value=0.00086  Score=36.44  Aligned_cols=40  Identities=20%  Similarity=0.362  Sum_probs=27.6

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCcee
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDM  142 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~  142 (151)
                      .||.+.+...   ...+..+.|.|.+.| +|.. .++|++||..+
T Consensus         2 ~PP~V~v~~~---~~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~   43 (91)
T d3frua1           2 EPPSMRLKAR---PGNSGSSVLTCAAFSFYPPELKFRFLRNGLAS   43 (91)
T ss_dssp             BCCEEEEEEE---ECSTTEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             CCCEEEEEec---CCCCCCEEEEEEEEeEECCCCEEEEEECCEeC
Confidence            3566655321   234568899999999 5664 49999998654

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.13  E-value=0.00069  Score=36.66  Aligned_cols=40  Identities=18%  Similarity=0.496  Sum_probs=27.6

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      ||.+.+...   ...++.+.|.|.+.| +|.. .++|++||..+.
T Consensus         3 pP~v~v~~~---~~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~   44 (89)
T d2mhaa1           3 SPKAHVTHH---SRPEDKVTLRCWALGFYPADITLTWQLNGEELI   44 (89)
T ss_dssp             CCEEEECCE---ESCSSEEEEEEEEESCBSSCCEEEEEETTEEEC
T ss_pred             CCEeEEEcc---CCCCCCEEEEEEEEeEECCCCEEEEEECCEEeC
Confidence            555554322   245678999999999 5544 399999987654

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.0002  Score=39.67  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=22.7

Q ss_pred             CccccccCCeEEEEEEEcCCC-CCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVP-PSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v   32 (151)
                      |.+|+.+|+|.|+|...+... +..++.+.|.|
T Consensus        66 l~~vt~~~~G~Y~C~y~~~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          66 IDHMDANKAGRYQCQYRIGHYRFRYSDTLELVV   98 (99)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEECCCEEEEE
T ss_pred             ecCCCHHHCceEEEEEECCCcccCCCCCEEEEe
Confidence            467899999999999988654 22344455544

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00032  Score=39.26  Aligned_cols=44  Identities=14%  Similarity=0.196  Sum_probs=29.3

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecc-cCC-CeeEEEcCCceec
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEA-YPK-SVNYWTREKGDMI  143 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~-~~~~W~k~~~~~~  143 (151)
                      .+|.+.+-+.......++.+.|.|.+.| +|. ..|.|++||..+.
T Consensus         3 ~~P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~   48 (105)
T d1fp5a2           3 AAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLP   48 (105)
T ss_dssp             BCCEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCCEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECC
Confidence            3555443322233456778999999998 554 4599999987653

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00013  Score=41.48  Aligned_cols=31  Identities=23%  Similarity=0.354  Sum_probs=21.4

Q ss_pred             CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   32 (151)
                      |.+++.+|+|.|.|.+..... .....+.|+|
T Consensus        78 I~~l~~~DsG~Y~C~v~~~~~-~~~~~v~L~V  108 (116)
T d1xeda_          78 IAQLSQDDSGRYKCGLGINSR-GLSFDVSLEV  108 (116)
T ss_dssp             ECSCCGGGCEEEEEEESCGGG-CCEEEEEEEE
T ss_pred             EhhhCcCCCEEEEEEEEcCCC-CceEeEEEEE
Confidence            678999999999998854432 3333455555

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00026  Score=39.39  Aligned_cols=44  Identities=16%  Similarity=0.355  Sum_probs=29.5

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      .+|.+.+.+....-..++.+.|.|.+.| +|.. .|.|++||..+.
T Consensus         4 ~~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~   49 (102)
T d1rzfl2           4 AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVK   49 (102)
T ss_dssp             BCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECC
Confidence            4566655332222335778999999999 5544 499999986654

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.05  E-value=0.00051  Score=37.96  Aligned_cols=42  Identities=17%  Similarity=0.427  Sum_probs=28.9

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeeccc-CC-CeeEEEcCCceec
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAY-PK-SVNYWTREKGDMI  143 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~k~~~~~~  143 (151)
                      ||.+.+.... ....++.+.|.|.+.|. |. ..++|++||..+.
T Consensus         3 PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~   46 (98)
T d1hdmb1           3 PPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVM   46 (98)
T ss_dssp             CCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEecc
Confidence            5665543221 24567889999999994 54 4599999987654

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00036  Score=39.20  Aligned_cols=44  Identities=18%  Similarity=0.407  Sum_probs=31.1

Q ss_pred             CCCeeee-CCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421        100 VPPIVKI-PSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus       100 ~~p~~~~-~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      .+|.+.+ .+....+..++.+.|.|.+.| +|.. .|+|++||..+.
T Consensus         3 ~~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~   49 (108)
T d1ow0a2           3 FRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELP   49 (108)
T ss_dssp             CCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECC
T ss_pred             CCCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcC
Confidence            4565554 344444567889999999998 5654 599999987654

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00065  Score=37.26  Aligned_cols=41  Identities=22%  Similarity=0.520  Sum_probs=27.2

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceecc
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMIA  144 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~~  144 (151)
                      ||.+.+...   ...++.+.|.|.+.| +|.. .++|++||..+..
T Consensus         3 PP~v~v~~~---~~~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~   45 (95)
T d1k5na1           3 PPKTHVTHH---PISDHEATLRCWALGFYPAEITLTWQRDGEDQTQ   45 (95)
T ss_dssp             CCEEEEEEE---EEETTEEEEEEEEEEEBSSCCEEEEEETTEECGG
T ss_pred             CCccEEEec---cCCCCCEEEEEEEEeEeCCCCEEEEEECCEEcCC
Confidence            555554321   224568999999999 4543 3999999876543

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00047  Score=38.34  Aligned_cols=44  Identities=14%  Similarity=0.238  Sum_probs=28.6

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeeccc-CCC-eeEEEcCCceec
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAY-PKS-VNYWTREKGDMI  143 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~k~~~~~~  143 (151)
                      .+|.+.+.+....-..++.+.|.|.+.|. |.. .|+|++||..+.
T Consensus         4 ~~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~   49 (102)
T d1q0xl2           4 SSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVT   49 (102)
T ss_dssp             BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             CCCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECC
Confidence            45665543322222346788999999984 543 499999987654

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=96.92  E-value=0.0011  Score=36.31  Aligned_cols=42  Identities=26%  Similarity=0.395  Sum_probs=28.1

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      ++|.+.+....  ...++.+.|.|.+.| +|.. .++|++|+..+.
T Consensus         2 v~P~V~l~~~~--~~~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~   45 (96)
T d2h26a1           2 VKPEAWLSSGP--SPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQ   45 (96)
T ss_dssp             BCCEEEEEEES--CCSTTEEEEEEEEEEEBSSCEEEEEEETTEECT
T ss_pred             cCCEEEEEcCC--CCCCCeEEEEEEEEEEECCCcEEEEEECcccCC
Confidence            34555443221  235678999999999 6766 499999876543

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=96.90  E-value=0.0013  Score=35.93  Aligned_cols=41  Identities=20%  Similarity=0.532  Sum_probs=27.8

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      +||.+.+...   -..+..+.|.|.+.| +|.. .++|++||..+.
T Consensus         2 vpP~V~v~~~---~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~   44 (94)
T d1hyrc1           2 VPPMVNVTRS---EASEGNITVTCRASGFYPWNITLSWRQDGVSLS   44 (94)
T ss_dssp             BCCEEEEEEC---CCSSSEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             cCCEEEEEec---CCCCCCEEEEEEEEEEECCCcEEEEeECCeEcC
Confidence            4565554321   134567899999999 5654 499999987654

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=96.90  E-value=0.00055  Score=37.79  Aligned_cols=43  Identities=23%  Similarity=0.301  Sum_probs=24.6

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      ++|.+.+.+.. ....++...|.|.+.| +|.. .++|++||..+.
T Consensus         3 V~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~   47 (98)
T d1d5mb1           3 VYPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEK   47 (98)
T ss_dssp             BCCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcC
Confidence            45666553222 2344667789999999 5553 499999986653

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.89  E-value=0.0011  Score=36.68  Aligned_cols=43  Identities=21%  Similarity=0.277  Sum_probs=29.1

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeeccc-CCC-eeEEEcCCceec
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAY-PKS-VNYWTREKGDMI  143 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~k~~~~~~  143 (151)
                      .+|.+.+-+.. ....|+...|.|.+.|. |.. .++|++||..+.
T Consensus         4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~   48 (99)
T d1uvqa1           4 EVPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVT   48 (99)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEEC
T ss_pred             cCCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEecc
Confidence            35555442211 24567888999999994 554 499999987664

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00055  Score=37.56  Aligned_cols=32  Identities=25%  Similarity=0.431  Sum_probs=23.3

Q ss_pred             CccccccCCeEEEEEEEcCCC-CCCccceEEEE
Q psy16421          1 MTEVSREHMGAYLCIASNGVP-PSVSKRIMLIV   32 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v   32 (151)
                      |.+|+.+|+|.|+|...+... +..++.+.|.|
T Consensus        61 i~~v~~~~~G~Y~C~y~~~~~~S~~Sd~leL~V   93 (95)
T d1olla1          61 IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVV   93 (95)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEECCCCCCEEEEE
T ss_pred             EeeeecCCCceEEEEeCCCCCccCCCCCEEEEE
Confidence            468899999999999887654 23455556555

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00083  Score=37.26  Aligned_cols=29  Identities=21%  Similarity=0.464  Sum_probs=23.1

Q ss_pred             cCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421        115 EGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus       115 ~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      .++.+.|.|.+.| +|.. .|+|++||....
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~   48 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPEN   48 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECC
Confidence            5778999999999 5654 599999986543

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00093  Score=36.99  Aligned_cols=73  Identities=15%  Similarity=0.199  Sum_probs=40.9

Q ss_pred             ecCCeEEEEeeecC-CC-CCeEEEEeCCeeeEecccCCC----CCCeeeeCCceeEeecCCcEEEEeeecc--cCCCe-e
Q psy16421         63 REGSNVSMRCAASG-SP-PPSIMWRREGGEMITNSFNNT----VPPIVKIPSQLIGAHEGQQLVLECISEA--YPKSV-N  133 (151)
Q Consensus        63 ~~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~~~~~~~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g--~p~~~-~  133 (151)
                      ..|+...|.|.+.| .| ...+.|++ ||+.+.......    .--.+.. .+...+..++...++|.+..  -+.|. .
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~-ng~~v~~~~~~~~~~~~dgty~~-~s~l~v~~~~~~~ytC~V~H~sl~~p~~~   94 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPSDIEVDLLK-NGERIEKVEHSDLSFSKDWSFYL-LYYTEFTPTEKDEYACRVNHVTLSQPKIV   94 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEE-TTEECTTCEECCCEECTTSCEEE-EEEEEECCCSSCCEEEEEECTTCSSCEEE
T ss_pred             cCCCCEEEEEEECccCCCCcEEEEEE-CCEecCCccccceecCCCCcEEE-EEEeEECCCCCCEEEEEEEeCCCCCCeEE
Confidence            45788899999988 34 45789999 566654211100    0001111 12223334445579999864  34454 6


Q ss_pred             EEEc
Q psy16421        134 YWTR  137 (151)
Q Consensus       134 ~W~k  137 (151)
                      +|-+
T Consensus        95 ~wd~   98 (100)
T d1k5nb_          95 KWDR   98 (100)
T ss_dssp             ECCT
T ss_pred             EccC
Confidence            7744

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0016  Score=36.41  Aligned_cols=39  Identities=15%  Similarity=0.306  Sum_probs=28.9

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecc-cCCC--eeEEEcCCcee
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEA-YPKS--VNYWTREKGDM  142 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~--~~~W~k~~~~~  142 (151)
                      .|.|....   .+.+|+.+.|.|.+.+ +|.+  .++|++++..+
T Consensus         4 ~P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~   45 (109)
T d1vcaa1           4 DPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLM   45 (109)
T ss_dssp             CCEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEE
T ss_pred             CCEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccCcee
Confidence            45665543   3679999999999875 6754  59999986654

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00062  Score=38.11  Aligned_cols=20  Identities=20%  Similarity=0.463  Sum_probs=17.2

Q ss_pred             CccccccCCeEEEEEEEcCC
Q psy16421          1 MTEVSREHMGAYLCIASNGV   20 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~   20 (151)
                      |.+++.+|+|.|.|.+....
T Consensus        73 I~~v~~~D~G~Y~C~V~~~~   92 (110)
T d1ncna_          73 LHNLQIKDKGLYQCIIHHKK   92 (110)
T ss_dssp             ECSCCGGGCEEEEEEEEEEC
T ss_pred             ECCCChhHCEEEEEEEEecC
Confidence            67999999999999986554

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0006  Score=36.95  Aligned_cols=32  Identities=16%  Similarity=0.209  Sum_probs=26.4

Q ss_pred             eeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421        110 LIGAHEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      .+....|++++|.|.+. .|.+.+.|++++..+
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i   35 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKV   35 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEE
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEecccc
Confidence            35688999999999864 588899999987654

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=96.77  E-value=0.0017  Score=35.86  Aligned_cols=74  Identities=16%  Similarity=0.288  Sum_probs=39.9

Q ss_pred             eecCCeEEEEeeecC-CC-CCeEEEEeCCeeeEecccCCC----CC-CeeeeCCceeEeecCCcEEEEeeecc--cCCCe
Q psy16421         62 VREGSNVSMRCAASG-SP-PPSIMWRREGGEMITNSFNNT----VP-PIVKIPSQLIGAHEGQQLVLECISEA--YPKSV  132 (151)
Q Consensus        62 ~~~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~~~~~~~----~~-p~~~~~~~~~~~~~g~~~~l~C~~~g--~p~~~  132 (151)
                      +..|+..+|.|.+.| .| ...+.|++ +|+.+.......    .. -.+... +...+...+.-.++|.+..  -+.|.
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~-ng~~v~~~~~~t~~~~~~dgtf~~~-s~l~v~~~~~~~ytC~V~H~sl~~pi   91 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLR-NSKSVADGVYETSFFVNRDYSFHKL-SYLTFIPSDDDIYDCKVEHWGLEEPV   91 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEE-SSSBCCSSEEECCCEECTTSCEEEE-EEEEECCCTTCCEEEEEECTTSSSCE
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEe-CCeeccCCceeeeeEECCCCCEEEE-EEeEEcCCCCCEEEEEEEECCCCCce
Confidence            345788899999988 44 56899999 565554211000    00 011111 1112223333458999864  34454


Q ss_pred             -eEEEc
Q psy16421        133 -NYWTR  137 (151)
Q Consensus       133 -~~W~k  137 (151)
                       ..|..
T Consensus        92 ~~~w~~   97 (100)
T d1muja1          92 LKHWSS   97 (100)
T ss_dssp             EEEECG
T ss_pred             eeEECC
Confidence             77743

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.00079  Score=37.72  Aligned_cols=43  Identities=19%  Similarity=0.288  Sum_probs=27.9

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      +|.+.+-+....-..+..+.|.|.+.| +|.. .|+|++||..+.
T Consensus         5 ~P~V~l~~ps~~~~~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~   49 (107)
T d1mjul2           5 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ   49 (107)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEEcc
Confidence            455544322222235678999999998 5553 599999986653

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.75  E-value=0.00091  Score=36.80  Aligned_cols=42  Identities=21%  Similarity=0.355  Sum_probs=23.7

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecc-cCC-CeeEEEcCCceec
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEA-YPK-SVNYWTREKGDMI  143 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~-~~~~W~k~~~~~~  143 (151)
                      +|.+.+.+... ...++...|.|.+.| +|. ..++|++||..+.
T Consensus         2 ~P~V~v~p~~~-~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~   45 (97)
T d1uvqb1           2 EPTVTISPSRT-EALNHHNLLVCSVTDFYPGQIKVRWFRNDQEET   45 (97)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             CCEEEEecCCc-ccCCCCEEEEEEEeeeECCCeEEEEEECCEEcC
Confidence            45555432221 344677789999998 454 3599999986654

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.75  E-value=0.0042  Score=34.07  Aligned_cols=70  Identities=19%  Similarity=0.411  Sum_probs=39.5

Q ss_pred             ecCCeEEEEeeecC-CC-CCeEEEEeCCeeeEecccCCCCCC------eeeeCCceeEeecCCcEEEEeeecc--cCCCe
Q psy16421         63 REGSNVSMRCAASG-SP-PPSIMWRREGGEMITNSFNNTVPP------IVKIPSQLIGAHEGQQLVLECISEA--YPKSV  132 (151)
Q Consensus        63 ~~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~~~~~~~~~p------~~~~~~~~~~~~~g~~~~l~C~~~g--~p~~~  132 (151)
                      ..++.+.|.|.+.| .| ...+.|++ |++.+..... ...+      .+.. .+...+..++.-.++|.+..  .+.|.
T Consensus        15 ~~~~~~tL~C~~~gFyP~~i~v~W~~-ng~~~~~~~~-~~~~~~~~dgty~~-~s~L~v~~~~~~~ytC~V~H~sl~~p~   91 (98)
T d1hdmb1          15 NTREPVMLACYVWGFYPAEVTITWRK-NGKLVMHSSA-HKTAQPNGDWTYQT-LSHLALTPSYGDTYTCVVEHIGAPEPI   91 (98)
T ss_dssp             SSSCSEEEEEEEEEEBSSCCEEEEEE-TTEECCCCCS-BCCCEECSSSCEEE-EEEEEECCCTTCCEEEEEECTTSSSCE
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEE-CCEeccCCeE-eCceEECCCCCEEE-EEEeEcCCCCCCEEEEEEEeCCCCCCe
Confidence            34678999999988 34 67899999 5665542211 1111      1111 11223333333468999864  44554


Q ss_pred             -eEE
Q psy16421        133 -NYW  135 (151)
Q Consensus       133 -~~W  135 (151)
                       ..|
T Consensus        92 ~~~w   95 (98)
T d1hdmb1          92 LRDW   95 (98)
T ss_dssp             EEEE
T ss_pred             eEEc
Confidence             777

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.74  E-value=0.00093  Score=37.06  Aligned_cols=29  Identities=21%  Similarity=0.424  Sum_probs=22.8

Q ss_pred             ecCCcEEEEeeecc-cCCC-eeEEEcCCcee
Q psy16421        114 HEGQQLVLECISEA-YPKS-VNYWTREKGDM  142 (151)
Q Consensus       114 ~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~  142 (151)
                      ..++.+.|.|.+.| +|.. .|+|++||...
T Consensus        17 ~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~   47 (102)
T d1igtb4          17 MTKKQVTLTCMVTDFMPEDIYVEWTNNGKTE   47 (102)
T ss_dssp             TTSSEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             hcCCcEEEEEEEEEeECCCcEEEEEECCEEc
Confidence            35788999999999 5653 59999997643

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0013  Score=36.91  Aligned_cols=64  Identities=14%  Similarity=0.223  Sum_probs=37.5

Q ss_pred             eecCCeEEEEeeecC-CCCC--eEEEEeCCeeeEecccCC---CCCCeeeeC-Cce-eEeecCCcEEEEeeec
Q psy16421         62 VREGSNVSMRCAASG-SPPP--SIMWRREGGEMITNSFNN---TVPPIVKIP-SQL-IGAHEGQQLVLECISE  126 (151)
Q Consensus        62 ~~~g~~~~l~C~~~g-~~~~--~~~W~~~~~~~~~~~~~~---~~~p~~~~~-~~~-~~~~~g~~~~l~C~~~  126 (151)
                      +.+|+.+.|.|.+.+ +|.+  .+.|++ |++.+......   ......... ... ....+.+...|+|.|.
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~-g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~   84 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLK-GDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAK   84 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEE-TTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEE
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEec-cCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEE
Confidence            668999999999755 6643  689999 66666532211   111111111 001 1123567779999986

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.73  E-value=0.0011  Score=36.78  Aligned_cols=28  Identities=14%  Similarity=0.408  Sum_probs=22.3

Q ss_pred             cCCcEEEEeeecc-cCCC-eeEEEcCCcee
Q psy16421        115 EGQQLVLECISEA-YPKS-VNYWTREKGDM  142 (151)
Q Consensus       115 ~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~  142 (151)
                      ..+.+.|.|.+.| +|.. .|.|++||..+
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~   46 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPA   46 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEc
Confidence            4678899999999 5654 49999998654

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.67  E-value=0.00061  Score=39.46  Aligned_cols=44  Identities=20%  Similarity=0.395  Sum_probs=31.1

Q ss_pred             CCCeeee-CCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421        100 VPPIVKI-PSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus       100 ~~p~~~~-~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      .||.+.+ .++...+..+..+.|.|.+.| +|.. .|+|++||..+.
T Consensus         3 ~PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~   49 (127)
T d1ogae2           3 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH   49 (127)
T ss_dssp             BCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             cCCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEcc
Confidence            5676654 344444556788999999998 5544 499999987653

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00088  Score=37.51  Aligned_cols=43  Identities=16%  Similarity=0.243  Sum_probs=27.8

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      +|.+.+.+........+.+.|.|.+.| +|.. .|+|++||....
T Consensus         5 ~P~V~l~~Ps~~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~   49 (107)
T d1c5cl2           5 APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQS   49 (107)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEEeeCCCCEEEEEECCEECC
Confidence            455544322222234678999999998 5654 599999986553

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.59  E-value=0.0017  Score=35.75  Aligned_cols=73  Identities=15%  Similarity=0.187  Sum_probs=38.8

Q ss_pred             ecCCeEEEEeeecC-CC-CCeEEEEeCCeeeEecccCC----CCCCeeeeCCceeEeecCCcEEEEeeeccc--CCCe-e
Q psy16421         63 REGSNVSMRCAASG-SP-PPSIMWRREGGEMITNSFNN----TVPPIVKIPSQLIGAHEGQQLVLECISEAY--PKSV-N  133 (151)
Q Consensus        63 ~~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~~~~~~----~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~--p~~~-~  133 (151)
                      ..|+.+.|.|.+.| .| ...+.|++ +++.+......    ..--.+.. .+...+...+...++|.+...  ..|. .
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~-~g~~~~~~~~~~~~~~~dgtf~~-~s~l~v~~~~~~~ytC~V~H~sl~~p~~~   93 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLK-NGKKIPKVEMSDMSFSKDWSFYI-LAHTEFTPTETDTYACRVKHDSMAEPKTV   93 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEE-TTEECTTCEEEEEEECTTCCEEE-EEEEEECCCSSCCEEEEEECTTSSSCEEE
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEee-CCeecCCcEECceeECCCCCEEE-EEEeEecCcCCCEEEEEEEeCCCCCCeEE
Confidence            35778999999988 44 45789999 56654321110    00001111 111222333334699998653  3344 6


Q ss_pred             EEEc
Q psy16421        134 YWTR  137 (151)
Q Consensus       134 ~W~k  137 (151)
                      +|-+
T Consensus        94 ~wd~   97 (99)
T d1lk2b_          94 YWDR   97 (99)
T ss_dssp             ECCT
T ss_pred             EecC
Confidence            6644

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.56  E-value=0.0021  Score=36.33  Aligned_cols=35  Identities=20%  Similarity=0.383  Sum_probs=29.4

Q ss_pred             eeeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        103 IVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       103 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      .+...+..+.+.+|+++.|.|.........+.|+|
T Consensus         3 ~V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyr   37 (115)
T d1lp9e1           3 SVTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYV   37 (115)
T ss_dssp             EEEECCSEEEEETTSCEEECEEEECSSSCCEEEEE
T ss_pred             CEEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEE
Confidence            35567788889999999999998776677899997

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.52  E-value=0.0019  Score=36.40  Aligned_cols=34  Identities=26%  Similarity=0.352  Sum_probs=28.2

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +...|..+.+.+|+++.|+|...+.....+.|+|
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyr   36 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFR   36 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEE
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEE
Confidence            4556778889999999999998776666799997

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0039  Score=33.85  Aligned_cols=70  Identities=14%  Similarity=0.320  Sum_probs=38.5

Q ss_pred             cCCeEEEEeeecC-CCC-CeEEEEeCCeeeEecccC----CCCCCeeeeCCceeEeecCCcEEEEeeecc--cCCCe-eE
Q psy16421         64 EGSNVSMRCAASG-SPP-PSIMWRREGGEMITNSFN----NTVPPIVKIPSQLIGAHEGQQLVLECISEA--YPKSV-NY  134 (151)
Q Consensus        64 ~g~~~~l~C~~~g-~~~-~~~~W~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g--~p~~~-~~  134 (151)
                      .|+.+.|.|.+.| .|. ..+.|++ |++.+.....    ....-.+... +...+..++.-.++|.+..  -+.|. +.
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~-ng~~~~~~~~~~~~~~~~~t~~~~-s~l~~~~~~~~~ytC~V~H~sl~~pl~~~   91 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTR-AGEVQEPELRGDVLHNGNGTYQSW-VVVAVPPQDTAPYSCHVQHSSLAQPLVVP   91 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEE-TTEECCCSEEEEEEETTTTEEEEE-EEEEECTTCCSCEEEEEEETTCSSCEEEE
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEE-CCEECCCcEEeeeecCCCCeEEEE-EEeEeCCCCCCEEEEEEEECCCCCCeEEE
Confidence            4678999999988 553 5789999 5665432111    0011112111 1222333444569999864  34444 55


Q ss_pred             E
Q psy16421        135 W  135 (151)
Q Consensus       135 W  135 (151)
                      |
T Consensus        92 w   92 (94)
T d1t7va1          92 W   92 (94)
T ss_dssp             C
T ss_pred             e
Confidence            5

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.48  E-value=0.003  Score=36.09  Aligned_cols=36  Identities=22%  Similarity=0.494  Sum_probs=28.1

Q ss_pred             CeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        49 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      |.+...|  ..+.+.+|+++.|.|.+.+.....+.|++
T Consensus         2 ~~~~~~P--~~~~~~~G~~vtL~C~~~~~~~~~v~Wyr   37 (122)
T d1nezg_           2 PELRIFP--KKMDAELGQKVDLVCEVLGSVSQGCSWLF   37 (122)
T ss_dssp             CEEEEES--SCEEECTTCCEEEEEEEESCCSSCEEEEE
T ss_pred             CceEEcC--CEEEECCCCCEEEEEEEcCccCCCEEEEE
Confidence            3444444  56788899999999998777777899987

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.47  E-value=0.002  Score=35.60  Aligned_cols=28  Identities=18%  Similarity=0.470  Sum_probs=21.7

Q ss_pred             cCCcEEEEeeecc-cCC-CeeEEEcCCcee
Q psy16421        115 EGQQLVLECISEA-YPK-SVNYWTREKGDM  142 (151)
Q Consensus       115 ~g~~~~l~C~~~g-~p~-~~~~W~k~~~~~  142 (151)
                      ..+.+.|.|.+.| +|. ..|+|++||...
T Consensus        18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~   47 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQ   47 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             cCCeEEEEEEEEEEECCCCEEEEEECCeec
Confidence            4678899999998 454 349999997654

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0022  Score=35.61  Aligned_cols=30  Identities=20%  Similarity=0.366  Sum_probs=23.5

Q ss_pred             ecCCcEEEEeeecc-cCCCe-eEEEcCCceec
Q psy16421        114 HEGQQLVLECISEA-YPKSV-NYWTREKGDMI  143 (151)
Q Consensus       114 ~~g~~~~l~C~~~g-~p~~~-~~W~k~~~~~~  143 (151)
                      ..+..+.|.|.+.| +|... |+|++||..+.
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~   50 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMD   50 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECC
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEcc
Confidence            45567899999999 66654 99999986654

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.45  E-value=0.0015  Score=36.48  Aligned_cols=44  Identities=20%  Similarity=0.393  Sum_probs=30.3

Q ss_pred             CCCeeeeC-CceeEeecCCcEEEEeeecc-cCCCe-eEEEcCCceec
Q psy16421        100 VPPIVKIP-SQLIGAHEGQQLVLECISEA-YPKSV-NYWTREKGDMI  143 (151)
Q Consensus       100 ~~p~~~~~-~~~~~~~~g~~~~l~C~~~g-~p~~~-~~W~k~~~~~~  143 (151)
                      .+|.+.+- ++...+..+..+.|.|.+.| +|... |+|++||..+.
T Consensus         7 ~~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~   53 (107)
T d1hxmb2           7 VSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTI   53 (107)
T ss_dssp             CSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCC
T ss_pred             CCCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEcc
Confidence            34554433 44444667889999999998 56544 99999886553

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.44  E-value=0.0032  Score=35.11  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=28.5

Q ss_pred             eeeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        103 IVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       103 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      .++..|..+.+.+|+++.|.|.........+.|+|
T Consensus         3 ~~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYr   37 (107)
T d1tjgl1           3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYR   37 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             cEEeeCCEEEECCCCCEEEEEEECCCCCccEEEEe
Confidence            35566888889999999999998765556788986

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.39  E-value=0.0032  Score=35.19  Aligned_cols=34  Identities=15%  Similarity=0.298  Sum_probs=28.1

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +...|..+.+.+|+++.|.|.........+.|+|
T Consensus         4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyr   37 (107)
T d1c5cl1           4 LTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQ   37 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEE
Confidence            4456778889999999999998776666799996

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.34  E-value=0.0045  Score=34.44  Aligned_cols=34  Identities=15%  Similarity=0.370  Sum_probs=27.9

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +...|..+.+.+|+++.|.|.........+.|+|
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYr   37 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQ   37 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEE
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCCceEEEE
Confidence            3456778889999999999998766556799996

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.32  E-value=0.0034  Score=34.81  Aligned_cols=31  Identities=16%  Similarity=0.341  Sum_probs=24.4

Q ss_pred             eecCCcEEEEeeecc-cCCCe-eEEEcCCceec
Q psy16421        113 AHEGQQLVLECISEA-YPKSV-NYWTREKGDMI  143 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g-~p~~~-~~W~k~~~~~~  143 (151)
                      +..|+...|.|.+.| +|... +.|++||..+.
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~   47 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVE   47 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECS
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecC
Confidence            456888899999999 66544 99999987543

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.29  E-value=0.0041  Score=35.27  Aligned_cols=34  Identities=21%  Similarity=0.390  Sum_probs=28.1

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +...|....+.+|+++.|.|...+.....+.|+|
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYr   37 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYR   37 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEE
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEE
Confidence            4556777889999999999998776667799997

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.26  E-value=0.0035  Score=35.33  Aligned_cols=33  Identities=12%  Similarity=0.261  Sum_probs=26.2

Q ss_pred             eeCCceeEeecCCcEEEEeeeccc-CCCeeEEEc
Q psy16421        105 KIPSQLIGAHEGQQLVLECISEAY-PKSVNYWTR  137 (151)
Q Consensus       105 ~~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~k  137 (151)
                      ...+..+.+.+|+++.|+|.+.+. ....+.|+|
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyr   35 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLR   35 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEE
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEE
Confidence            345677889999999999998763 445699986

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0039  Score=34.06  Aligned_cols=20  Identities=20%  Similarity=0.281  Sum_probs=16.6

Q ss_pred             CccccccCCeEEEEEEEcCC
Q psy16421          1 MTEVSREHMGAYLCIASNGV   20 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~   20 (151)
                      |.+++.+|+|.|+|......
T Consensus        60 l~~v~~~~~G~Y~C~y~~~~   79 (96)
T d1ucta2          60 LGPVDLNVSGIYRCYGWYNR   79 (96)
T ss_dssp             CCSCCGGGCEEEEEEEECTT
T ss_pred             EeccccccCcEEEEEEEcCC
Confidence            56899999999999986653

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.24  E-value=0.0045  Score=34.49  Aligned_cols=34  Identities=15%  Similarity=0.242  Sum_probs=27.6

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +...|..+.+.+|+++.|.|...+.....+.|+|
T Consensus         4 ~tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYr   37 (107)
T d1ospl1           4 MSQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQ   37 (107)
T ss_dssp             EECCCSEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             EEeeCCEEEECCCCCEEEEEecCCCcccccEEEE
Confidence            3455778889999999999998766555799997

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.24  E-value=0.0036  Score=35.23  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=28.4

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +...|..+.+.+|+++.|.|.....+...+.|+|
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyr   36 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYK   36 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEE
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEE
Confidence            4556778889999999999998776667799996

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=96.24  E-value=0.0082  Score=33.05  Aligned_cols=71  Identities=14%  Similarity=0.306  Sum_probs=38.7

Q ss_pred             cCCeEEEEeeecC-CC-CCeEEEEeCCeeeEecccC--CC---CCCeeeeCCceeEeecCCcEEEEeeeccc--CCCe-e
Q psy16421         64 EGSNVSMRCAASG-SP-PPSIMWRREGGEMITNSFN--NT---VPPIVKIPSQLIGAHEGQQLVLECISEAY--PKSV-N  133 (151)
Q Consensus        64 ~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~~~~~--~~---~~p~~~~~~~~~~~~~g~~~~l~C~~~g~--p~~~-~  133 (151)
                      .|+..+|.|.+.| .| ...+.|++ ||+.+.....  ..   .--.+... +...+..++.-.++|.+...  ..|. .
T Consensus        18 ~~~~~tL~C~v~gF~P~~i~v~W~~-ng~~~~~~~~~~~~~~~~dgty~~~-S~L~v~~~~~~~ytC~V~H~sl~~pi~~   95 (101)
T d1fnga1          18 LGEPNILICFIDKFSPPVVNVTWLR-NGRPVTEGVSETVFLPRDDHLFRKF-HYLTFLPSTDDFYDCEVDHWGLEEPLRK   95 (101)
T ss_dssp             TTSCEEEEEEEEEEBSSCCEEEEEE-TTEEECSSEEECCCEECSSSCEEEE-EEEEECCCTTCCEEEEEECTTCSSCEEE
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEE-CCeecCCCcEeCeEEECCCCcEEEE-EEeEEcCCCCCEEEEEEEECCCCCCceE
Confidence            4677889999988 45 45899999 6666543110  00   00011111 11222323333689999653  4454 7


Q ss_pred             EEE
Q psy16421        134 YWT  136 (151)
Q Consensus       134 ~W~  136 (151)
                      .|-
T Consensus        96 ~w~   98 (101)
T d1fnga1          96 HWE   98 (101)
T ss_dssp             EEC
T ss_pred             Ecc
Confidence            774

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0057  Score=33.27  Aligned_cols=69  Identities=23%  Similarity=0.433  Sum_probs=37.4

Q ss_pred             cCCeEEEEeeecC-CC-CCeEEEEeCCeeeEecccCCCCCC------eeeeCCceeEeecCCcEEEEeeeccc--CCCe-
Q psy16421         64 EGSNVSMRCAASG-SP-PPSIMWRREGGEMITNSFNNTVPP------IVKIPSQLIGAHEGQQLVLECISEAY--PKSV-  132 (151)
Q Consensus        64 ~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~~~~~~~~~p------~~~~~~~~~~~~~g~~~~l~C~~~g~--p~~~-  132 (151)
                      .+..+.|.|.+.| .| ...+.|++ +|+.+..... ...+      .+.. .....+..++.-.++|.+...  +.|. 
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~-~g~~~~~~~~-~~~~~~~~~~~~~~-~s~l~v~~~~~~~ytC~V~H~~L~~pl~   90 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQR-DGEDQTQDTE-LVETRPAGDRTFQK-WAAVVVPSGEEQRYTCHVQHEGLPKPLT   90 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEE-TTEECGGGCE-ECCCEECSSSCEEE-EEEEEEETTCGGGEEEEEECTTCSSCEE
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEE-CCEEcCCCce-eccEEcCCCCeEEE-EEEEEEEcCCCCEEEEEEEECcCCCCce
Confidence            3567999999988 44 45789999 5665543211 0001      1111 112233444445689998753  4444 


Q ss_pred             eEE
Q psy16421        133 NYW  135 (151)
Q Consensus       133 ~~W  135 (151)
                      +.|
T Consensus        91 ~~w   93 (95)
T d1k5na1          91 LRW   93 (95)
T ss_dssp             ECC
T ss_pred             EEc
Confidence            444

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.23  E-value=0.0043  Score=34.53  Aligned_cols=34  Identities=12%  Similarity=0.259  Sum_probs=27.7

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +...|..+.+.+|+++.|.|.........+.|+|
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYr   37 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQ   37 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             EECcCCeEEECCCCCEEEEEEecCCCCcceEEEE
Confidence            4456778889999999999997765566799996

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.21  E-value=0.0043  Score=34.49  Aligned_cols=34  Identities=12%  Similarity=0.300  Sum_probs=27.5

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      ++..|..+.+.+|+++.|.|...+.-...+.|++
T Consensus         3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYr   36 (106)
T d1op3k1           3 MTQSPSTLSASVGDTITITCRASQSIETWLAWYQ   36 (106)
T ss_dssp             EEEECSEEEECTTCEEEEEEEESSCCTTCEEEEE
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEe
Confidence            3456778889999999999998765556699996

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.21  E-value=0.0045  Score=34.41  Aligned_cols=34  Identities=15%  Similarity=0.270  Sum_probs=27.7

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +...|..+.+.+|+.+.|.|.........+.|++
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYr   36 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQ   36 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEE
Confidence            4556778889999999999997766555699997

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.19  E-value=0.004  Score=34.63  Aligned_cols=34  Identities=9%  Similarity=0.344  Sum_probs=27.3

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      ++..|..+.+.+|+++.|.|.........+.|+|
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYr   37 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQ   37 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEe
Confidence            3456777889999999999987765556799996

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.16  E-value=0.005  Score=34.29  Aligned_cols=34  Identities=15%  Similarity=0.261  Sum_probs=27.7

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +...|..+.+.+|+++.|.|.........+.|+|
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYr   37 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQDINSYLSWFQ   37 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCCCCCCccceeE
Confidence            4456777889999999999998766666799986

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.15  E-value=0.0043  Score=34.95  Aligned_cols=34  Identities=18%  Similarity=0.328  Sum_probs=28.0

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +...+..+.+.+|+.+.|+|.....-...+.|+|
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYr   36 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYV   36 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEE
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEE
Confidence            4556778889999999999998765556799997

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.11  E-value=0.0058  Score=34.01  Aligned_cols=34  Identities=9%  Similarity=0.299  Sum_probs=27.0

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      ++..+..+.+.+|+++.|.|.....-...+.|+|
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYr   37 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQ   37 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCTTCEEEEE
T ss_pred             EEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEe
Confidence            4456777889999999999997655555699996

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.10  E-value=0.0031  Score=34.87  Aligned_cols=29  Identities=24%  Similarity=0.602  Sum_probs=24.1

Q ss_pred             ceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        109 QLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      ..+.+.+|+++.|.|.........+.|+|
T Consensus         6 ~sl~~~~G~svtl~C~~~~~~~~~~~WYr   34 (103)
T d8faba1           6 PSVSVSPGQTARITCSANALPNQYAYWYQ   34 (103)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCCEEEEE
Confidence            36788999999999998765556799996

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.07  E-value=0.0058  Score=34.11  Aligned_cols=34  Identities=12%  Similarity=0.299  Sum_probs=27.6

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +...|..+.+.+|+++.|.|.........+.|++
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYr   37 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQ   37 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEE
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEE
Confidence            4456777889999999999998766566799986

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.99  E-value=0.0066  Score=33.85  Aligned_cols=34  Identities=12%  Similarity=0.269  Sum_probs=27.6

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +...|..+.+.+|+.+.|.|...+.-...+.|+|
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYr   39 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQ   39 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCCCcceEee
Confidence            4455778889999999999998776556789986

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=95.98  E-value=0.003  Score=34.67  Aligned_cols=27  Identities=22%  Similarity=0.649  Sum_probs=21.0

Q ss_pred             cCCcEEEEeeecc-cCCCe-eEEEcCCce
Q psy16421        115 EGQQLVLECISEA-YPKSV-NYWTREKGD  141 (151)
Q Consensus       115 ~g~~~~l~C~~~g-~p~~~-~~W~k~~~~  141 (151)
                      ....+.|.|.+.| +|... |.|++||..
T Consensus        13 ~~~~vtL~C~~~gFyP~~I~v~W~~ng~~   41 (98)
T d1u58a1          13 REGGMRLRCFARDYYPADLEIRWWKDDGG   41 (98)
T ss_dssp             SSSCEEEEEEEEEEBSSCEEEEEEEECSS
T ss_pred             CCCcEEEEEEEEEEcCCCCEEEEEECCcc
Confidence            3557899999999 56544 999998753

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.98  E-value=0.0015  Score=36.33  Aligned_cols=43  Identities=19%  Similarity=0.335  Sum_probs=28.8

Q ss_pred             CCCeeeeCC-ceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421        100 VPPIVKIPS-QLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus       100 ~~p~~~~~~-~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      .+|.+.+-+ .... ..++.+.|.|.+.| +|.. .|.|++||..+.
T Consensus         4 ~~P~V~v~~ps~~~-~~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~   49 (104)
T d1nfde2           4 SSPKVTVFPPSPEE-LRTNKATLVCLVNDFYPGSATVTWKANGATIN   49 (104)
T ss_dssp             BCCEEECCCCCHHH-HHTTEECCCEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             cCCEEEEECCCHHH-HcCCcEEEEEEEEEeeCCCCEEEEEECCEECC
Confidence            456555432 2222 34677899999998 5543 599999987665

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.012  Score=31.90  Aligned_cols=29  Identities=21%  Similarity=0.474  Sum_probs=22.3

Q ss_pred             cCCeEEEEeeecC-CC-CCeEEEEeCCeeeEe
Q psy16421         64 EGSNVSMRCAASG-SP-PPSIMWRREGGEMIT   93 (151)
Q Consensus        64 ~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~   93 (151)
                      .++.++|.|.+.| .| ...+.|++ ||+.+.
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~-dg~~~~   44 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLK-DKQPMD   44 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEE-CCEECc
Confidence            3567899999988 56 45899999 676664

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.97  E-value=0.0068  Score=33.84  Aligned_cols=34  Identities=15%  Similarity=0.268  Sum_probs=27.4

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      ++..|..+.+.+|+.+.|.|.........+.|+|
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYr   37 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQ   37 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCcccceee
Confidence            3455777888999999999998765556699997

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0039  Score=35.10  Aligned_cols=34  Identities=15%  Similarity=0.126  Sum_probs=26.9

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccC-CCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYP-KSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~k  137 (151)
                      +...|...++.+|+++.|.|...+.. ...+.|+|
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~Wyr   37 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLF   37 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEE
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEE
Confidence            55667788899999999999976543 44589987

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0074  Score=33.43  Aligned_cols=43  Identities=16%  Similarity=0.349  Sum_probs=26.3

Q ss_pred             CCeee-eCCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421        101 PPIVK-IPSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI  143 (151)
Q Consensus       101 ~p~~~-~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~  143 (151)
                      +|.+. ..+..........+.|.|.+.| +|.. .|+|.++|....
T Consensus         5 ~P~V~~l~p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~   50 (105)
T d1dn0b2           5 APTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDI   50 (105)
T ss_dssp             CCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEE
T ss_pred             CCeEEeECCCccccCCCCceEEEEEEecccCCcEEEEEEECCcccc
Confidence            45443 3344444556788999999999 5654 499999876543

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.93  E-value=0.0073  Score=33.47  Aligned_cols=30  Identities=17%  Similarity=0.375  Sum_probs=25.0

Q ss_pred             CceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +..+.+.+|+++.|.|...+.....+.|+|
T Consensus         7 p~s~~~~~G~svtL~C~~s~~~~~~~~WYr   36 (106)
T d1lk3l1           7 PPALTVSPGEKLTISCKASESVTSRMHWYQ   36 (106)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCccEEEEe
Confidence            446889999999999998766566799996

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.93  E-value=0.003  Score=35.25  Aligned_cols=34  Identities=12%  Similarity=0.290  Sum_probs=27.6

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +...|..+.+.+|+++.|.|.........+.|+|
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYr   37 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQ   37 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEE
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEE
Confidence            4456777888999999999998776666799996

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=95.92  E-value=0.014  Score=31.98  Aligned_cols=30  Identities=23%  Similarity=0.491  Sum_probs=22.5

Q ss_pred             ecCCeEEEEeeecC-CC-CCeEEEEeCCeeeEe
Q psy16421         63 REGSNVSMRCAASG-SP-PPSIMWRREGGEMIT   93 (151)
Q Consensus        63 ~~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~   93 (151)
                      ..|+...|.|.+.| .| ...+.|++ +|+.+.
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~-ng~~~~   48 (99)
T d1uvqa1          17 TLGQPNTLICLVDNIFPPVVNITWLS-NGQSVT   48 (99)
T ss_dssp             CTTSCEEEEEEEEEECSSCCEEEEEE-TTEEEC
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEE-CCEecc
Confidence            34677889999988 44 46799999 666654

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.92  E-value=0.0077  Score=34.07  Aligned_cols=36  Identities=25%  Similarity=0.225  Sum_probs=25.2

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccC---CCeeEEEcCC
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYP---KSVNYWTREK  139 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p---~~~~~W~k~~  139 (151)
                      +..+...+.+..|+++.|.|.....+   ...+.|++.+
T Consensus         5 V~~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~   43 (126)
T d1pkoa_           5 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSP   43 (126)
T ss_dssp             EECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC-
T ss_pred             EECCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecC
Confidence            33445557889999999999975322   3359999864

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=95.88  E-value=0.0037  Score=34.18  Aligned_cols=29  Identities=31%  Similarity=0.670  Sum_probs=21.4

Q ss_pred             cCCeEEEEeeecC-CCCC-eEEEEeCCeeeEe
Q psy16421         64 EGSNVSMRCAASG-SPPP-SIMWRREGGEMIT   93 (151)
Q Consensus        64 ~g~~~~l~C~~~g-~~~~-~~~W~~~~~~~~~   93 (151)
                      +++.+.|.|.+.| .|.. .+.|++ +++.+.
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~-~~~~~~   45 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMR-GEQEQQ   45 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEE-TTEECT
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEE-CcccCC
Confidence            3568999999988 5644 789999 555543

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0052  Score=33.51  Aligned_cols=19  Identities=26%  Similarity=0.639  Sum_probs=15.9

Q ss_pred             CccccccCCeEEEEEEEcC
Q psy16421          1 MTEVSREHMGAYLCIASNG   19 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~   19 (151)
                      |.+|+.+|+|.|+|.....
T Consensus        61 i~~v~~~~~G~Y~C~y~~~   79 (96)
T d1ugna1          61 IPSITWEHTGRYRCYYGSD   79 (96)
T ss_dssp             ESSCCGGGCEEEEEEEEET
T ss_pred             EEecCHHHCCeEEEEEeCC
Confidence            5689999999999987644

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.87  E-value=0.0099  Score=33.14  Aligned_cols=34  Identities=24%  Similarity=0.325  Sum_probs=27.1

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +...+..+.+.+|+.+.|.|...+.....+.|++
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYr   36 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYK   36 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEE
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEE
Confidence            4456777888999999999997766556688986

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.85  E-value=0.0085  Score=33.66  Aligned_cols=34  Identities=15%  Similarity=0.378  Sum_probs=26.9

Q ss_pred             eeeCCceeEeecCCcEEEEeeeccc-CCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAY-PKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~k  137 (151)
                      ++..|..+.+.+|+++.|.|...+. ....+.|+|
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyr   36 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNR   36 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEE
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEE
Confidence            4566788889999999999997653 345689997

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.84  E-value=0.006  Score=33.02  Aligned_cols=19  Identities=16%  Similarity=0.497  Sum_probs=16.5

Q ss_pred             CccccccCCeEEEEEEEcC
Q psy16421          1 MTEVSREHMGAYLCIASNG   19 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~   19 (151)
                      |++++++|+|.|.|.+...
T Consensus        61 I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1          61 IRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             ECSCCGGGCEEEEEEEESS
T ss_pred             eeccccCcCccceeeEecC
Confidence            6789999999999988654

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.81  E-value=0.0068  Score=33.68  Aligned_cols=33  Identities=21%  Similarity=0.356  Sum_probs=26.0

Q ss_pred             eeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        105 KIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       105 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      ...+..+.+.+|+.+.|.|.....-...+.|+|
T Consensus         3 ~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYr   35 (110)
T d1u3ha1           3 RQSPQSLTVWEGETAILNCSYENSAFDYFPWYQ   35 (110)
T ss_dssp             ECSCSSEEEETTSCEEEEEEECCTTEEEEEEEE
T ss_pred             EecCCEEEEcCCCCEEEEEEecCCCCcEEEEEe
Confidence            345667788999999999998765445699996

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=95.73  E-value=0.014  Score=31.90  Aligned_cols=69  Identities=14%  Similarity=0.247  Sum_probs=35.7

Q ss_pred             CCeEEEEeeecC-CC-CCeEEEEeCCeeeEecccC--CC---CCCeeeeCCceeEeecCCcEEEEeeecc--cCCCe-eE
Q psy16421         65 GSNVSMRCAASG-SP-PPSIMWRREGGEMITNSFN--NT---VPPIVKIPSQLIGAHEGQQLVLECISEA--YPKSV-NY  134 (151)
Q Consensus        65 g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~~~~~--~~---~~p~~~~~~~~~~~~~g~~~~l~C~~~g--~p~~~-~~  134 (151)
                      ++...|.|.+.| .| ...+.|++ ||..+.....  ..   .--.+... +...+...+...++|.+..  -+.|. +.
T Consensus        18 ~~~~tL~C~v~~F~P~~i~v~W~~-~g~~~~~~~~~~~~~~~~dgtf~~~-s~l~~~~~~~~~ytC~V~H~sl~~pi~~~   95 (98)
T d1d5mb1          18 QHHNLLVCSVNGFYPGSIEVRWFR-NGQEEKTGVVSTGLIQNGDWTFQTL-VMLETVPRSGEVYTCQVEHPSVTSPLTVE   95 (98)
T ss_dssp             ---CEEEEEEEEEBSSCCEEEEEE-TTEECCSSEEECCCEECSSSCEEEE-EEEECCCCTTCEEEEEEECTTCSSCEEEE
T ss_pred             CCceEEEEEEeeeECCCcEEEEEE-CCEEcCCCCEECeEEeCCCcEEEEE-EEeeEcCCCCCEEEEEEEECCCCCCeEEE
Confidence            556789999988 44 45899999 5555432110  00   00011111 1122334555579999964  34554 77


Q ss_pred             E
Q psy16421        135 W  135 (151)
Q Consensus       135 W  135 (151)
                      |
T Consensus        96 w   96 (98)
T d1d5mb1          96 W   96 (98)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.66  E-value=0.0092  Score=33.50  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=27.5

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +..++..+.+.+|+++.|.|.........+.|+|
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyr   36 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYV   36 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCCEEEEEE
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEE
Confidence            4556777889999999999998765556788986

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.64  E-value=0.01  Score=33.13  Aligned_cols=34  Identities=18%  Similarity=0.244  Sum_probs=26.9

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +...|....+.+|+++.|.|...+.-...+.|+|
T Consensus         4 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYr   37 (112)
T d1fo0b_           4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQ   37 (112)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESCTTCCEEEEEE
T ss_pred             EEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEe
Confidence            4455677778999999999997765556799997

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=95.62  E-value=0.0084  Score=33.78  Aligned_cols=34  Identities=26%  Similarity=0.484  Sum_probs=26.9

Q ss_pred             eeeCCceeEeecCCcEEEEeeecc-cCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEA-YPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~k  137 (151)
                      +...+..+.+.+|+++.|.|...+ .....+.|+|
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyr   37 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYR   37 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEE
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEE
Confidence            455677888999999999998754 3456799986

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.56  E-value=0.011  Score=32.98  Aligned_cols=34  Identities=18%  Similarity=0.261  Sum_probs=27.4

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +...+..+.+.+|+++.|.|.....-...+.|+|
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYr   36 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYV   36 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEE
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEE
Confidence            4566778889999999999987655445699997

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.014  Score=31.73  Aligned_cols=40  Identities=20%  Similarity=0.242  Sum_probs=30.0

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCc
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKG  140 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~  140 (151)
                      -.|.|...+.. .+..|.+++|.|.........|.|+|+|.
T Consensus         4 PkP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~   43 (96)
T d1ucta2           4 GKPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGE   43 (96)
T ss_dssp             CCCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTC
T ss_pred             CCCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCc
Confidence            35677776655 58899999999986434445799999875

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=95.53  E-value=0.018  Score=32.57  Aligned_cols=35  Identities=17%  Similarity=0.197  Sum_probs=27.3

Q ss_pred             eeeeCCceeEeecCCcEEEEeeecccC--CCeeEEEc
Q psy16421        103 IVKIPSQLIGAHEGQQLVLECISEAYP--KSVNYWTR  137 (151)
Q Consensus       103 ~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~k  137 (151)
                      .+...+..+.+.+|+++.|.|...+..  ...+.|+|
T Consensus         3 ~vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~Wyr   39 (120)
T d1hxma1           3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYR   39 (120)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEE
T ss_pred             eEeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEE
Confidence            355567778899999999999987643  34599997

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.50  E-value=0.015  Score=32.38  Aligned_cols=30  Identities=17%  Similarity=0.347  Sum_probs=23.8

Q ss_pred             CceeEeecCCcEEEEeeecccC-CCeeEEEc
Q psy16421        108 SQLIGAHEGQQLVLECISEAYP-KSVNYWTR  137 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~k  137 (151)
                      +..+.+.+|+++.|.|...+.. ...+.|+|
T Consensus         5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYr   35 (112)
T d1kgcd1           5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYR   35 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESCCCTTCCEEEEE
T ss_pred             CCEEEECCCCCEEEEEEEeCCCccccEEEEE
Confidence            5567889999999999977644 34499997

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=95.49  E-value=0.011  Score=32.24  Aligned_cols=20  Identities=20%  Similarity=0.502  Sum_probs=16.3

Q ss_pred             CccccccCCeEEEEEEEcCC
Q psy16421          1 MTEVSREHMGAYLCIASNGV   20 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~   20 (151)
                      |.+++..|+|.|+|......
T Consensus        61 l~~v~~~~~G~Y~C~y~~~~   80 (96)
T d1nkra1          61 ISRMTQDLAGTYRCYGSVTH   80 (96)
T ss_dssp             ESSCCGGGCEEEEEEEEBTT
T ss_pred             EcccCcccCeEEEEEEEcCC
Confidence            46789999999999876553

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=95.48  E-value=0.015  Score=33.14  Aligned_cols=34  Identities=21%  Similarity=0.405  Sum_probs=26.3

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccC--CCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYP--KSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~k  137 (151)
                      +..++.+++..+|+.+.|+|.++|..  ...+.|+|
T Consensus         4 l~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYr   39 (123)
T d1hxmb1           4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYR   39 (123)
T ss_dssp             EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEE
T ss_pred             eECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEE
Confidence            45556677888999999999998754  23589986

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=95.42  E-value=0.017  Score=32.29  Aligned_cols=34  Identities=18%  Similarity=0.348  Sum_probs=26.8

Q ss_pred             eeeCCceeEeecCCcEEEEeeeccc--CCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAY--PKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~--p~~~~~W~k  137 (151)
                      +...|..+.+.+|+++.|+|...+.  ....+.|+|
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyr   38 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYR   38 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEE
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceee
Confidence            4556778889999999999998753  345699996

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.42  E-value=0.022  Score=31.46  Aligned_cols=29  Identities=21%  Similarity=0.458  Sum_probs=23.9

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|.........+.||+
T Consensus         9 ~~l~v~~G~svtl~C~~s~~~~~~~~WYr   37 (107)
T d1kcvl1           9 KSMGMSVGEAVTLNCKASENVGTYVSWYQ   37 (107)
T ss_dssp             SEEEEETTCCEEEEEEESSCCTTCEEEEE
T ss_pred             CEEeECCCCCEEEEEEecCCcCCceEEEE
Confidence            45678889999999998766666799997

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.011  Score=32.18  Aligned_cols=39  Identities=10%  Similarity=0.042  Sum_probs=29.3

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCc
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKG  140 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~  140 (151)
                      ..|.|...+.. .+..|++|+|.|.+.. +...+.|+|+|.
T Consensus         6 pkPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~l~k~g~   44 (99)
T d1ucta1           6 PMPFISAKSSP-VIPLDGSVKIQCQAIR-EAYLTQLMIIKN   44 (99)
T ss_dssp             CCCCEEESSCS-EEETTCCEEEEECCCT-TCSEEEEEEEET
T ss_pred             CCCEEEecCCC-ceeCCCeEEEEEcCCC-CCcEEEEEECCC
Confidence            35777777655 4889999999998753 456799998764

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.39  E-value=0.0077  Score=33.09  Aligned_cols=27  Identities=15%  Similarity=0.484  Sum_probs=21.6

Q ss_pred             ecCCcEEEEeeecc-cCCC-eeEEEcCCc
Q psy16421        114 HEGQQLVLECISEA-YPKS-VNYWTREKG  140 (151)
Q Consensus       114 ~~g~~~~l~C~~~g-~p~~-~~~W~k~~~  140 (151)
                      ..++.+.|.|.+.| +|.. .|.|.++|.
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~   46 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGAL   46 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCC
Confidence            46889999999998 6654 499988764

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=95.37  E-value=0.028  Score=30.48  Aligned_cols=68  Identities=16%  Similarity=0.301  Sum_probs=35.2

Q ss_pred             CCeEEEEeeecC-CC-CCeEEEEeCCeeeEecccCCCCCC------eeeeCCceeEeecCCcEEEEeeeccc--CCCe-e
Q psy16421         65 GSNVSMRCAASG-SP-PPSIMWRREGGEMITNSFNNTVPP------IVKIPSQLIGAHEGQQLVLECISEAY--PKSV-N  133 (151)
Q Consensus        65 g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~~~~~~~~~p------~~~~~~~~~~~~~g~~~~l~C~~~g~--p~~~-~  133 (151)
                      ++...|.|.+.| .| ...+.|++ +++.+..... ...+      .+... +...+...+...++|.+...  ..|. .
T Consensus        16 ~~~~tL~C~~~gF~P~~i~v~W~~-ng~~~~~~~~-~~~~~~~~dgty~~~-s~l~v~~~~~~~ytC~V~H~sl~~p~~~   92 (97)
T d1uvqb1          16 NHHNLLVCSVTDFYPGQIKVRWFR-NDQEETAGVV-STPLIRNGDWTFQIL-VMLEMTPQRGDVYTCHVEHPSLQSPITV   92 (97)
T ss_dssp             ---CEEEEEEEEEBSSCCEEEEEE-TTEEECTTEE-ECCCEECSSSCEEEE-EEEECCSCTTCCEEEEEECTTCSSCEEE
T ss_pred             CCCEEEEEEEeeeECCCeEEEEEE-CCEEcCCCcE-eceeecCCCceEEEE-EEeccCCCCCCEEEEEEEeCCCCCCcce
Confidence            566789999887 44 46899999 5555442110 0011      11111 12223344445799998653  4444 6


Q ss_pred             EE
Q psy16421        134 YW  135 (151)
Q Consensus       134 ~W  135 (151)
                      .|
T Consensus        93 ~w   94 (97)
T d1uvqb1          93 EW   94 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            67

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.36  E-value=0.017  Score=32.04  Aligned_cols=34  Identities=24%  Similarity=0.405  Sum_probs=26.9

Q ss_pred             eeeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        103 IVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       103 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      .+...|....+.+|+++.|.|...+ ....+.|+|
T Consensus         3 ~V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYr   36 (110)
T d2aq2a1           3 AVTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYR   36 (110)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESS-CCSEEEEEE
T ss_pred             CEEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEE
Confidence            3556677888999999999998754 345799997

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.26  E-value=0.015  Score=32.52  Aligned_cols=29  Identities=28%  Similarity=0.574  Sum_probs=23.9

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|...+.....+.|++
T Consensus         8 ~~v~v~~G~sv~L~C~~s~~~~~~~~Wyr   36 (113)
T d2bnqd1           8 AALSVPEGENLVLNCSFTDSAIYNLQWFR   36 (113)
T ss_dssp             SEEEEETTCCEEEEEEESCCCEEEEEEEE
T ss_pred             CEEEEcCCCCEEEEEEEecCcccCCeEEE
Confidence            45777889999999998776666789997

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=95.24  E-value=0.015  Score=32.22  Aligned_cols=34  Identities=12%  Similarity=0.229  Sum_probs=25.9

Q ss_pred             eeeCCceeEeecCCcEEEEeeeccc-CCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAY-PKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~k  137 (151)
                      +...|..+.+.+|+.+.|.|...+. ....+.|+|
T Consensus         4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYr   38 (108)
T d2fx7l1           4 LTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQ   38 (108)
T ss_dssp             EECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEE
T ss_pred             EEeeCCeEEECCCCCEEEEEEeecCCCCccceeEe
Confidence            3455778889999999999987643 334588986

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=95.23  E-value=0.022  Score=31.46  Aligned_cols=29  Identities=24%  Similarity=0.489  Sum_probs=23.8

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|.........+.||+
T Consensus         8 ~sl~~~~G~svtL~C~~~~~~~~~~~WYr   36 (106)
T d1op3k1           8 STLSASVGDTITITCRASQSIETWLAWYQ   36 (106)
T ss_dssp             SEEEECTTCEEEEEEEESSCCTTCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCcEEEEe
Confidence            45677889999999998765666789997

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=95.23  E-value=0.019  Score=32.12  Aligned_cols=34  Identities=18%  Similarity=0.442  Sum_probs=26.6

Q ss_pred             eeeCCceeEeecCCcEEEEeeeccc--CCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAY--PKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~--p~~~~~W~k  137 (151)
                      +...|..+.+.+|+.+.|.|..++.  ....+.|+|
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYr   37 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYR   37 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEE
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEE
Confidence            3456778888999999999987653  345699997

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.19  E-value=0.022  Score=31.40  Aligned_cols=28  Identities=25%  Similarity=0.578  Sum_probs=22.8

Q ss_pred             ceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      .+.+.+|++++|.|.........+.|++
T Consensus         9 s~~~~~G~svtL~C~~s~~~~~~~~WYr   36 (106)
T d1lk3l1           9 ALTVSPGEKLTISCKASESVTSRMHWYQ   36 (106)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCccEEEEe
Confidence            3566789999999998766666789996

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=95.13  E-value=0.021  Score=31.84  Aligned_cols=34  Identities=15%  Similarity=0.348  Sum_probs=25.4

Q ss_pred             eeeCCceeEeecCCcEEEEeeeccc-----CCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAY-----PKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~-----p~~~~~W~k  137 (151)
                      ++..+..+.+.+|+++.|.|...+.     ....+.|++
T Consensus         4 lTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYr   42 (112)
T d1mjul1           4 MTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFL   42 (112)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEE
T ss_pred             eEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEE
Confidence            3455777888999999999987653     134589986

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.09  E-value=0.012  Score=32.35  Aligned_cols=38  Identities=18%  Similarity=0.468  Sum_probs=22.0

Q ss_pred             CCeee-eCCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCC
Q psy16421        101 PPIVK-IPSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREK  139 (151)
Q Consensus       101 ~p~~~-~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~  139 (151)
                      +|.+. ..+... -..++.+.|.|.+.| +|.. .|+|.+++
T Consensus         5 ~PsV~~l~p~~~-~~~~~~~~l~Cl~~gf~P~~i~v~W~~~~   45 (102)
T d1mjuh2           5 APSVYPLAPVCG-DTSGSSVTLGCLVKGYFPEPVTLTWNSGS   45 (102)
T ss_dssp             CCEEEEECCCC-------CEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CCEEEEECCCcc-ccCCCcEEEEEEEeeeeCCCeEEEECcCC
Confidence            45543 333332 246789999999999 5544 49997765

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0088  Score=31.99  Aligned_cols=68  Identities=15%  Similarity=0.217  Sum_probs=39.6

Q ss_pred             ceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccC------CCCCCeeeeC--C---ceeEeecCCcEEEEeeecc
Q psy16421         59 DIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN------NTVPPIVKIP--S---QLIGAHEGQQLVLECISEA  127 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~------~~~~p~~~~~--~---~~~~~~~g~~~~l~C~~~g  127 (151)
                      .+....|++++|.|... .|.+.+.|++. +..+.....      ......+...  .   .-..+...+.....|.+.+
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQ-KDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEET-TEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEe-ccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence            45667899999999865 48889999994 444432111      0001111111  0   1112456788888898765


Q ss_pred             c
Q psy16421        128 Y  128 (151)
Q Consensus       128 ~  128 (151)
                      .
T Consensus        82 ~   82 (93)
T d1ccza1          82 I   82 (93)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.09  E-value=0.027  Score=31.14  Aligned_cols=29  Identities=28%  Similarity=0.497  Sum_probs=23.3

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+++.+|++++|.|...+.....+.|++
T Consensus         9 ~~ltv~~G~svtl~C~~s~~~~~~~~WYr   37 (107)
T d1ospl1           9 SSFSVSLGDRVTITCKASEDIYSRLAWYQ   37 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             CEEEECCCCCEEEEEecCCCcccccEEEE
Confidence            45677789999999998765555789997

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.08  E-value=0.026  Score=31.73  Aligned_cols=29  Identities=24%  Similarity=0.645  Sum_probs=23.7

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|...+.....+.|++
T Consensus         9 ~~~~~~~G~~v~L~C~~~~~~~~~~~WYr   37 (118)
T d2ij0c1           9 SMVIVKSGTSVKIECRSLDTNIHTMFWYR   37 (118)
T ss_dssp             SEEEECTTCCEEEEEEECSSCCSEEEEEE
T ss_pred             CeEEEcCCCCEEEEEEEcCCcccEEEEEE
Confidence            34667789999999998766667899997

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=95.05  E-value=0.024  Score=31.57  Aligned_cols=34  Identities=15%  Similarity=0.248  Sum_probs=25.1

Q ss_pred             eeeCCceeEeecCCcEEEEeeeccc-C---CCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAY-P---KSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~-p---~~~~~W~k  137 (151)
                      ++..|..+.+.+|+++.|.|..++. .   ...+.|+|
T Consensus         4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYr   41 (111)
T d2gsia1           4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQ   41 (111)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEE
T ss_pred             eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEE
Confidence            3456778889999999999987542 1   22389987

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.03  E-value=0.022  Score=31.45  Aligned_cols=29  Identities=24%  Similarity=0.565  Sum_probs=23.3

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|.........+.|++
T Consensus         9 ~slsv~~G~svtl~C~~s~~~~~~~~WYr   37 (106)
T d1i8ka_           9 ASLSVATGEKVTIRCMTSTDIDDDMNWYQ   37 (106)
T ss_dssp             SEEECCTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             CEEEECCCCCEEEEEEeCCCCCccEEEEe
Confidence            45667789999999998765666789996

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.00  E-value=0.01  Score=33.71  Aligned_cols=33  Identities=18%  Similarity=0.372  Sum_probs=26.1

Q ss_pred             eeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        105 KIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       105 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      ...|..+.+.+|+++.|.|...+.-...+.|+|
T Consensus         5 tQ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYr   37 (119)
T d1f3rb2           5 TQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQ   37 (119)
T ss_dssp             CEETSEECCCTTCCEEEEEECSSCCBTCEEEEE
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCcceeEEee
Confidence            345677788999999999997765455699997

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=94.97  E-value=0.024  Score=31.70  Aligned_cols=34  Identities=21%  Similarity=0.303  Sum_probs=25.3

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccC-----CCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYP-----KSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p-----~~~~~W~k  137 (151)
                      ++..|..+.+.+|+.+.|.|...+..     ...+.|++
T Consensus         4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYr   42 (112)
T d1ncwl1           4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLL   42 (112)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEE
T ss_pred             EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEE
Confidence            34557778899999999999865432     23488985

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.93  E-value=0.031  Score=30.90  Aligned_cols=29  Identities=24%  Similarity=0.422  Sum_probs=22.8

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|.........+.|++
T Consensus         9 ~~l~~~~G~svtl~C~~s~~~~~~~~WYr   37 (107)
T d1mexl1           9 KFMSTSLGNRVSVTCKASQNVGTNVAWFQ   37 (107)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCceEEEe
Confidence            34667789999999997665556789996

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.11  Score=27.81  Aligned_cols=71  Identities=18%  Similarity=0.208  Sum_probs=43.0

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEeccc-C---CCCCCeeeeCCceeEeecCCcEEEE
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF-N---NTVPPIVKIPSQLIGAHEGQQLVLE  122 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~-~---~~~~p~~~~~~~~~~~~~g~~~~l~  122 (151)
                      .+|.+...+   ...+..|++++|.|.... ....+.|+++ +....... .   ......|.+.+    +...+.....
T Consensus         3 PKPsLsa~P---~~~V~~G~~VTL~C~~~~-~~~~f~L~k~-g~~~~~~~~~~~~~~~~a~F~i~~----v~~~~~G~Y~   73 (95)
T d1olla1           3 PKPFIWAEP---HFMVPKEKQVTICCQGNY-GAVEYQLHFE-GSLFAVDRPKPPERINKVKFYIPD----MNSRMAGQYS   73 (95)
T ss_dssp             CCCEEEEES---CSEEETTCCEEEEEECCT-TCCEEEEEET-TEEEEEECCSSCTTCCEEEEEESS----CCGGGCEEEE
T ss_pred             CCCEEEeeC---CCcccCCCcEEEEEecCC-CccEEEEEEC-CCCcceeEEccCCCccEEEEEEee----eecCCCceEE
Confidence            357776665   235778999999999754 4677889984 43322111 0   11112344433    4567788889


Q ss_pred             eeec
Q psy16421        123 CISE  126 (151)
Q Consensus       123 C~~~  126 (151)
                      |...
T Consensus        74 C~y~   77 (95)
T d1olla1          74 CIYR   77 (95)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            9753

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.90  E-value=0.019  Score=32.06  Aligned_cols=34  Identities=18%  Similarity=0.420  Sum_probs=26.4

Q ss_pred             eeeCCceeEeecCCcEEEEeeecc-cCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEA-YPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~k  137 (151)
                      +...+..+.+.+|+++.|.|.... .....+.|+|
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYr   36 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYK   36 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEE
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEE
Confidence            445677888999999999998654 4445689997

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.014  Score=31.58  Aligned_cols=30  Identities=13%  Similarity=0.340  Sum_probs=24.5

Q ss_pred             eeEeecCCcEEEEeeecccCCCeeEEEcCC
Q psy16421        110 LIGAHEGQQLVLECISEAYPKSVNYWTREK  139 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~  139 (151)
                      .+...+|+++.|.|.........+.|++..
T Consensus         3 ~V~~~~G~svtL~C~~s~~~~~~~~W~~~~   32 (97)
T d2nxyb1           3 VVLGKKGDTVELTCTASQKKSIQFHWKNSN   32 (97)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETT
T ss_pred             EEEEEcCCcEEEEEEEecCCCceEEEEEeC
Confidence            356789999999999887777789999753

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.88  E-value=0.024  Score=31.46  Aligned_cols=30  Identities=23%  Similarity=0.462  Sum_probs=23.3

Q ss_pred             CceeEeecCCcEEEEeeeccc-CCCeeEEEc
Q psy16421        108 SQLIGAHEGQQLVLECISEAY-PKSVNYWTR  137 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~k  137 (151)
                      +.++.+.+|+++.|.|...+. ....+.|+|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYr   35 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYR   35 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEE
Confidence            446788999999999987643 344589997

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.85  E-value=0.024  Score=31.57  Aligned_cols=34  Identities=21%  Similarity=0.430  Sum_probs=26.2

Q ss_pred             eeeCCceeEeecCCcEEEEeeecc-cCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEA-YPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~k  137 (151)
                      +...+..+.+.+|+++.|.|.... .....+.|+|
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyr   37 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYK   37 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEE
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEE
Confidence            455677888999999999998653 3345589997

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=94.85  E-value=0.031  Score=30.87  Aligned_cols=29  Identities=24%  Similarity=0.579  Sum_probs=23.5

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|.........+.|++
T Consensus         9 ~sl~~~~G~svtL~C~~s~~~~~~~~WYr   37 (107)
T d1tjgl1           9 SSLSASVGDRITITCRASQGVTSALAWYR   37 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             CEEEECCCCCEEEEEEECCCCCccEEEEe
Confidence            45667789999999998765567889997

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.77  E-value=0.033  Score=30.70  Aligned_cols=29  Identities=31%  Similarity=0.572  Sum_probs=23.3

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|.........+.|++
T Consensus         9 ~~l~v~~G~~vtL~C~~~~~~~~~~~WYr   37 (107)
T d1j1pl_           9 ATLSVTPGNSVSLSCRASQSIGNNLHWYQ   37 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             CeEEECCCCCEEEEEEecCCCCcceEEEE
Confidence            35667789999999997665566799997

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.74  E-value=0.034  Score=30.74  Aligned_cols=29  Identities=24%  Similarity=0.445  Sum_probs=23.3

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|.........+.|++
T Consensus         9 ~s~~~~~G~svtl~C~~s~~~~~~~~Wyr   37 (107)
T d1c5cl1           9 SSLSASLGERVSLTCRTSQEISGYLSWLQ   37 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             CEEEECCCCCEEEEEEeCCCCCCCEEEEE
Confidence            34667789999999998776666789997

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.73  E-value=0.034  Score=30.82  Aligned_cols=29  Identities=28%  Similarity=0.574  Sum_probs=23.2

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|.........+.|++
T Consensus         9 ~~l~~~~G~svtL~C~~s~~~~~~~~WYr   37 (108)
T d1jhll_           9 SYLVASPGETITINCRASKSISKSLAWYQ   37 (108)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEE
T ss_pred             CeEEecCCCCEEEEEEccCCcCCceEEEE
Confidence            45677789999999998765566789986

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.72  E-value=0.027  Score=31.47  Aligned_cols=29  Identities=21%  Similarity=0.480  Sum_probs=24.0

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|.........+.|++
T Consensus         9 ~~v~v~~G~~vtL~C~~~~~~~~~i~Wyr   37 (115)
T d1lp9e1           9 GLVTLTEGLPVMLNCTYQSTYSPFLFWYV   37 (115)
T ss_dssp             SEEEEETTSCEEECEEEECSSSCCEEEEE
T ss_pred             CeEEECCCCCEEEEEEEeCCCcCCeeEEE
Confidence            45678889999999997766677899997

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.71  E-value=0.035  Score=30.79  Aligned_cols=29  Identities=21%  Similarity=0.436  Sum_probs=23.4

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|.........+.|++
T Consensus         9 ~~l~~~~G~svtL~C~~s~~~~~~i~WYr   37 (109)
T d1mqkl_           9 VSLSASVGETVTITCRASENIYSYLAWYQ   37 (109)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             CEEEECCCCCEEEEEEeCCCcCcccceee
Confidence            45677789999999998765566689997

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.66  E-value=0.031  Score=31.12  Aligned_cols=29  Identities=24%  Similarity=0.661  Sum_probs=24.2

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|.........+.|++
T Consensus         8 ~~~~~~~G~~vtL~C~~~~~~~~~~~Wyr   36 (114)
T d2cdea1           8 QSLIILEGKNCTLQCNYTVSPFSNLRWYK   36 (114)
T ss_dssp             SEEEEETTCCCEEEEEECCSCCSEEEEEE
T ss_pred             CEEEEeCCCCEEEEEEEcCCCccCceEEE
Confidence            46778899999999998766667799997

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.015  Score=31.97  Aligned_cols=26  Identities=19%  Similarity=0.529  Sum_probs=20.1

Q ss_pred             cCCcEEEEeeecc-cCCC-eeEEEcCCc
Q psy16421        115 EGQQLVLECISEA-YPKS-VNYWTREKG  140 (151)
Q Consensus       115 ~g~~~~l~C~~~g-~p~~-~~~W~k~~~  140 (151)
                      .+..+.|.|.+.| +|.. .|+|.+++.
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~   46 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGAL   46 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCC
Confidence            5778999999998 5544 499987753

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=94.58  E-value=0.02  Score=31.83  Aligned_cols=29  Identities=14%  Similarity=0.264  Sum_probs=23.5

Q ss_pred             ceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        109 QLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      .++.+.+|+++.|.|.........+.|+|
T Consensus         8 ~sl~~~~G~svtl~C~~~~~~~~~i~WYr   36 (109)
T d1w72l1           8 PSVSVAPGQTARITCGGNNIGSRSVHWYQ   36 (109)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEE
T ss_pred             CeEEECCCCCEEEEEEcCCCCCcceeeee
Confidence            46788999999999997665555699986

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.58  E-value=0.011  Score=32.74  Aligned_cols=28  Identities=11%  Similarity=0.155  Sum_probs=21.4

Q ss_pred             EeecCCcEEEEeeecccCCCeeEEEcCC
Q psy16421        112 GAHEGQQLVLECISEAYPKSVNYWTREK  139 (151)
Q Consensus       112 ~~~~g~~~~l~C~~~g~p~~~~~W~k~~  139 (151)
                      .+.+|+++.|.|.........+.|+|..
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~   37 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGN   37 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESS
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCc
Confidence            3679999999998544445679999853

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=94.54  E-value=0.03  Score=31.14  Aligned_cols=34  Identities=12%  Similarity=0.254  Sum_probs=24.4

Q ss_pred             eeeCCceeEeecCCcEEEEeeeccc-C---CCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAY-P---KSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~-p---~~~~~W~k  137 (151)
                      ++..|..+.+.+|+++.|.|..... +   ...+.|+|
T Consensus         4 ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYr   41 (111)
T d1j05a_           4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQ   41 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEE
T ss_pred             EEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEE
Confidence            3455777788999999999987432 1   22399987

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.54  E-value=0.025  Score=31.42  Aligned_cols=30  Identities=10%  Similarity=0.334  Sum_probs=23.6

Q ss_pred             CceeEeecCCcEEEEeeecccCC--CeeEEEc
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPK--SVNYWTR  137 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~k  137 (151)
                      |.++++.+|+++.|.|...+...  .-+.|+|
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~Wyr   38 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQ   38 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEE
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEee
Confidence            45788999999999999876432  3489986

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.51  E-value=0.042  Score=30.31  Aligned_cols=29  Identities=24%  Similarity=0.466  Sum_probs=23.2

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|........-+.|++
T Consensus         9 ~sl~~~~G~svtl~C~~s~~~~~~~~WYr   37 (107)
T d1d5il1           9 SSMYASLGERVTITCKASQDINSYLSWFQ   37 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             CEEEECCCCCEEEEEEcCCCCCCccceeE
Confidence            34667789999999998766666788996

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.47  E-value=0.011  Score=32.89  Aligned_cols=19  Identities=16%  Similarity=0.468  Sum_probs=16.1

Q ss_pred             CccccccCCeEEEEEEEcC
Q psy16421          1 MTEVSREHMGAYLCIASNG   19 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~   19 (151)
                      |.+++++|+|.|.|.+...
T Consensus        73 I~~~~~~Dsa~YyCa~~~~   91 (110)
T d2esvd1          73 LPHATLRDTAVYYCIVVRS   91 (110)
T ss_dssp             ESSCCGGGCEEEEEEEEES
T ss_pred             hcccccCCceEEEEEEeCC
Confidence            5789999999999987644

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=94.45  E-value=0.033  Score=31.03  Aligned_cols=29  Identities=31%  Similarity=0.602  Sum_probs=23.1

Q ss_pred             CceEeecCCeEEEEeeecC-CCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASG-SPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g-~~~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|...+ .....+.|++
T Consensus         6 ~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyr   35 (115)
T d2atpb1           6 SSLLVQTNHTAKMSCEVKSISKLTSIYWLR   35 (115)
T ss_dssp             SEEEECTTSCEEEEEECCSSCCSSEEEEEE
T ss_pred             CcEEEcCCCCEEEEEEEeCCCCCCceEEEE
Confidence            4567889999999999866 3456789997

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.45  E-value=0.044  Score=30.15  Aligned_cols=29  Identities=28%  Similarity=0.462  Sum_probs=23.2

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|.........+.|++
T Consensus         8 ~~l~~~~G~svtl~C~~s~~~~~~~~WYr   36 (106)
T d1a0ql1           8 SSLSASLGGKVTITCKASQDIKKYIGWYQ   36 (106)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             CEEEECCCCCEEEEEEcCCCCCCCeEEEE
Confidence            35667789999999998765555689997

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=94.43  E-value=0.017  Score=30.77  Aligned_cols=26  Identities=19%  Similarity=0.354  Sum_probs=19.7

Q ss_pred             CcEEEEeeecc-cCCCe-eEEEcCCcee
Q psy16421        117 QQLVLECISEA-YPKSV-NYWTREKGDM  142 (151)
Q Consensus       117 ~~~~l~C~~~g-~p~~~-~~W~k~~~~~  142 (151)
                      +.+.|.|.+.| +|... +.|.+||..+
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~   41 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKIT   41 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEE
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEc
Confidence            45689999999 45443 9999997654

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.39  E-value=0.034  Score=31.03  Aligned_cols=29  Identities=41%  Similarity=0.744  Sum_probs=23.8

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|.........+.|++
T Consensus         8 ~~v~~~~G~~vtl~C~~s~~~~~~i~WYr   36 (115)
T d1j8hd1           8 SHVSVSEGALVLLRCNYSSSVPPYLFWYV   36 (115)
T ss_dssp             SEEEEETTSCEEECCEEECSSCCEEEEEE
T ss_pred             CeEEEcCCCCEEEEEEeCCCCceeEEEEE
Confidence            45778899999999997665566799997

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.39  E-value=0.039  Score=30.69  Aligned_cols=33  Identities=21%  Similarity=0.393  Sum_probs=23.8

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCC---eeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKS---VNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~---~~~W~k  137 (151)
                      +..++ ++.+.+|+++.|.|...+....   .+.|+|
T Consensus         4 ~tQ~~-slsvs~G~tvtl~C~~s~~~~~~~~~v~Wyr   39 (110)
T d1oaql_           4 VTQES-ALTTSPGETVTLTCRSSTGAVTTSNYANWVQ   39 (110)
T ss_dssp             EEECS-EEEECTTCEEEEEEEETTBCCCGGGCCEEEE
T ss_pred             EeeCC-CEEeCCCCCEEEEEEEcCCCCcceeeeEEEE
Confidence            34443 6788999999999998754322   288996

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.012  Score=32.29  Aligned_cols=38  Identities=13%  Similarity=0.225  Sum_probs=26.3

Q ss_pred             eeCCceeEeecCCcEEEEeeecc-cCC---CeeEEEcCCcee
Q psy16421        105 KIPSQLIGAHEGQQLVLECISEA-YPK---SVNYWTREKGDM  142 (151)
Q Consensus       105 ~~~~~~~~~~~g~~~~l~C~~~g-~p~---~~~~W~k~~~~~  142 (151)
                      ..+|....+..+..+.|.|.+.| +|.   ..+.|+++++..
T Consensus         5 l~pPs~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~   46 (103)
T d1fp5a1           5 LSRPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKP   46 (103)
T ss_dssp             EECCCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCC
T ss_pred             EeCcCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCcee
Confidence            34455455667888999999998 454   247788876644

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.35  E-value=0.034  Score=31.10  Aligned_cols=33  Identities=27%  Similarity=0.478  Sum_probs=26.0

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +...+..+.+.+|+++.|.|...+. ...+.|+|
T Consensus         3 l~Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYr   35 (115)
T d1ogad1           3 LEQSPQFLSIQEGENLTVYCNSSSV-FSSLQWYR   35 (115)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSSC-CSCEEEEE
T ss_pred             eEeCCCeEEECCCCCEEEEEEECCC-CceEEEEe
Confidence            4456777889999999999997653 34699997

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=94.32  E-value=0.045  Score=30.33  Aligned_cols=30  Identities=27%  Similarity=0.513  Sum_probs=23.4

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~   87 (151)
                      ..+.+.+|+++.|.|.........+.||+.
T Consensus         9 ~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ   38 (112)
T d1fo0b_           9 RWRLVPRGQAVNLRCILKNSQYPWMSWYQQ   38 (112)
T ss_dssp             SEEECCTTCCEEEEEEESCTTCCEEEEEEE
T ss_pred             CeEEECCCCCEEEEEEEecCCCCcEEEEeE
Confidence            345677899999999976655667899973

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.31  E-value=0.051  Score=30.17  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=26.0

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +...+..+.+.+|+.+.|.|...+. ...+.|+|
T Consensus         4 V~Q~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYr   36 (113)
T d1h5ba_           4 VEQSPSALSLHEGTDSALRCNFTTT-MRSVQWFR   36 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSC-CSEEEEEE
T ss_pred             eEECCCEEEEcCCCCEEEEEEEecC-CccceEEE
Confidence            4455778889999999999997653 34699997

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.31  E-value=0.027  Score=31.12  Aligned_cols=29  Identities=21%  Similarity=0.410  Sum_probs=23.5

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|.........+.|++
T Consensus         9 ~s~~~~~G~~vtl~C~~s~~~~~~~~WYr   37 (107)
T d3cx5k1           9 VSLAASLGDRVTISCRASQDINNFLNWYQ   37 (107)
T ss_dssp             TTCCBCSSSCCEEEEEESSCCTTCEEEEE
T ss_pred             CEEEECCCCCEEEEEEcCCCcCCCeEEEE
Confidence            35667789999999998776666789996

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.31  E-value=0.049  Score=30.08  Aligned_cols=29  Identities=24%  Similarity=0.448  Sum_probs=23.2

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|...+.....+.|++
T Consensus        11 ~~l~~~~G~svtL~C~~s~~~~~~~~WYr   39 (109)
T d1bwwa_          11 SSLSASVGDRVTITCQASQDIIKYLNWYQ   39 (109)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             CEEEECCCCCEEEEEEecCCCCCcceEee
Confidence            35667789999999998775566788997

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.30  E-value=0.06  Score=29.73  Aligned_cols=29  Identities=21%  Similarity=0.437  Sum_probs=23.2

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|........-+.|++
T Consensus         8 ~s~~~~~G~svtl~C~~s~~~~~~~~WYr   36 (111)
T d1bd2d1           8 PSLSVQEGRISILNCDYTNSMFDYFLWYK   36 (111)
T ss_dssp             SEEEEETTSCEEEEEEECCTTCCEEEEEE
T ss_pred             CEEEEcCCCCEEEEEEeCCCCCCeEEEEE
Confidence            35667889999999997766666788986

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.27  E-value=0.013  Score=32.78  Aligned_cols=20  Identities=25%  Similarity=0.586  Sum_probs=16.6

Q ss_pred             CccccccCCeEEEEEEEcCC
Q psy16421          1 MTEVSREHMGAYLCIASNGV   20 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~   20 (151)
                      |.+++++|+|.|.|.+....
T Consensus        75 I~~~~~~Dsa~YyCa~~~~~   94 (113)
T d1h5ba_          75 IRDAQLEDSGTYFCAAEASS   94 (113)
T ss_dssp             ECSCCGGGCEEEEEEEECSS
T ss_pred             ECCCCHhHCEEEEEEecCCC
Confidence            57899999999999876543

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.26  E-value=0.0072  Score=33.84  Aligned_cols=26  Identities=19%  Similarity=0.505  Sum_probs=20.2

Q ss_pred             cCCcEEEEeeecc-cCC-CeeEEEcCCc
Q psy16421        115 EGQQLVLECISEA-YPK-SVNYWTREKG  140 (151)
Q Consensus       115 ~g~~~~l~C~~~g-~p~-~~~~W~k~~~  140 (151)
                      .+..+.|.|.+.| +|. ..|.|.+++.
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~   53 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSSEP   53 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSCCT
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeCCC
Confidence            4678899999998 554 3599998763

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=94.23  E-value=0.02  Score=31.42  Aligned_cols=28  Identities=21%  Similarity=0.551  Sum_probs=22.0

Q ss_pred             ceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      .+.+.+|++++|.|.........+.|++
T Consensus         7 sl~~~~G~svtl~C~~~~~~~~~~~WYr   34 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPNQYAYWYQ   34 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCCEEEEE
Confidence            4566789999999997665556689996

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.15  E-value=0.086  Score=27.91  Aligned_cols=29  Identities=31%  Similarity=0.652  Sum_probs=21.7

Q ss_pred             cCCeEEEEeeecCC-C-CCeEEEEeCCeeeEe
Q psy16421         64 EGSNVSMRCAASGS-P-PPSIMWRREGGEMIT   93 (151)
Q Consensus        64 ~g~~~~l~C~~~g~-~-~~~~~W~~~~~~~~~   93 (151)
                      .++.+.|.|.+.|. | ...+.|++ +|+.+.
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~-~g~~~~   44 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQL-NGEELI   44 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEE-TTEEEC
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEE-CCEEeC
Confidence            35689999999884 3 34689999 566654

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.14  E-value=0.045  Score=30.11  Aligned_cols=29  Identities=21%  Similarity=0.422  Sum_probs=23.2

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|.........+.|++
T Consensus         7 ~~~~~~~G~~vtl~C~~~~~~~~~~~WYr   35 (110)
T d1u3ha1           7 QSLTVWEGETAILNCSYENSAFDYFPWYQ   35 (110)
T ss_dssp             SSEEEETTSCEEEEEEECCTTEEEEEEEE
T ss_pred             CEEEEcCCCCEEEEEEecCCCCcEEEEEe
Confidence            45678899999999997665555689997

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=94.11  E-value=0.052  Score=30.61  Aligned_cols=34  Identities=15%  Similarity=0.223  Sum_probs=25.9

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccC--CCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYP--KSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~k  137 (151)
                      +..++..+...+|+++.|.|.+.+..  ...+.|+|
T Consensus         4 l~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYr   39 (120)
T d1ypzf1           4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYR   39 (120)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEE
T ss_pred             eEcCCCEEEecCCCcEEEEEEEecccccCCcccEEE
Confidence            44556677788999999999977643  34599987

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.11  E-value=0.048  Score=30.18  Aligned_cols=32  Identities=22%  Similarity=0.288  Sum_probs=24.4

Q ss_pred             eeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        105 KIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       105 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      ...|..+.+.+|+++.|.|...+. ...+.|+|
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~~-~~~~~WYr   34 (111)
T d2esve1           3 TQFPSHSVIEKGQTVTLRCDPISG-HDNLYWYR   34 (111)
T ss_dssp             EEECSEEEEETTCCEEEEEECCTT-CSEEEEEE
T ss_pred             EECCCEEEECCCCCEEEEEEECCC-CceEEEEE
Confidence            345667788999999999985442 35699996

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=94.08  E-value=0.014  Score=31.85  Aligned_cols=26  Identities=23%  Similarity=0.473  Sum_probs=18.8

Q ss_pred             CCeEEEEeeecC-CC-CCeEEEEeCCeee
Q psy16421         65 GSNVSMRCAASG-SP-PPSIMWRREGGEM   91 (151)
Q Consensus        65 g~~~~l~C~~~g-~~-~~~~~W~~~~~~~   91 (151)
                      ...+.|.|.+.| .| ...+.|++ |++.
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~-ng~~   41 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWK-DDGG   41 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEE-ECSS
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEE-CCcc
Confidence            346889999988 44 44789999 4544

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=94.07  E-value=0.034  Score=31.12  Aligned_cols=29  Identities=17%  Similarity=0.401  Sum_probs=23.1

Q ss_pred             ceeEeecCCcEEEEeeecccC--CCeeEEEc
Q psy16421        109 QLIGAHEGQQLVLECISEAYP--KSVNYWTR  137 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g~p--~~~~~W~k  137 (151)
                      .++.+.+|+++.|.|...+.-  ...+.|++
T Consensus         8 ps~~v~~G~svtL~C~~s~~~~~~~~~~WYr   38 (114)
T d2rhea_           8 PSASGTPGQRVTISCTGSATDIGSNSVIWYQ   38 (114)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCEEEEE
T ss_pred             CcEEeCCCCCEEEEEEECCccccCCccccee
Confidence            367889999999999987643  45699996

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=94.03  E-value=0.049  Score=30.34  Aligned_cols=34  Identities=15%  Similarity=0.202  Sum_probs=25.8

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccC-----CCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYP-----KSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p-----~~~~~W~k  137 (151)
                      ++..|..+.+.+|+.+.|.|...+..     ...+.|++
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYr   43 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYL   43 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEE
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEe
Confidence            45667788899999999999975422     24589986

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.00  E-value=0.062  Score=29.74  Aligned_cols=32  Identities=19%  Similarity=0.401  Sum_probs=24.6

Q ss_pred             eeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        105 KIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       105 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      ...|....+.+|+++.|.|..... ...+.|+|
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~s~~-~~~~~WYr   34 (112)
T d2bnub1           3 TQTPKFQVLKTGQSMTLQCAQDMN-HEYMSWYR   34 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC-CSEEEEEE
T ss_pred             EECCCeEEECCCCCEEEEEEEECC-ccceEecc
Confidence            445666778999999999986543 45699996

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.06  Score=28.89  Aligned_cols=39  Identities=13%  Similarity=0.233  Sum_probs=29.0

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCc
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKG  140 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~  140 (151)
                      -+|.|...+.. .+..|++|+|.|.... +...+.|+|+|.
T Consensus         3 pkPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~Keg~   41 (93)
T d1olla2           3 DTPTLSVHPGP-EVISGEKVTFYCRLDT-ATSMFLLLKEGR   41 (93)
T ss_dssp             CCCEEEEESCS-EEETTCEEEEEEECSS-SCSEEEEEEESS
T ss_pred             CCCEEEEeCCC-cccCCCcEEEEECCCC-CCCEEEEEECCC
Confidence            35677766654 4889999999998753 345799999864

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.98  E-value=0.035  Score=30.38  Aligned_cols=31  Identities=10%  Similarity=0.161  Sum_probs=23.3

Q ss_pred             ecCCcEEEEeeecc-cCC---CeeEEEcCCceecc
Q psy16421        114 HEGQQLVLECISEA-YPK---SVNYWTREKGDMIA  144 (151)
Q Consensus       114 ~~g~~~~l~C~~~g-~p~---~~~~W~k~~~~~~~  144 (151)
                      ..+..+.|.|.+.| +|.   ..++|++||..+..
T Consensus        14 ~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~   48 (103)
T d1i1ca1          14 GGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHT   48 (103)
T ss_dssp             TSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECC
T ss_pred             ccCCCcEEEEEEEeeECCCCCEEEEEEECCccccC
Confidence            35677899999998 454   36899999876543

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=93.93  E-value=0.014  Score=32.67  Aligned_cols=21  Identities=19%  Similarity=0.317  Sum_probs=17.2

Q ss_pred             CccccccCCeEEEEEEEcCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVP   21 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~   21 (151)
                      |++++++|+|.|.|.+....+
T Consensus        69 I~~l~~~Dsa~YyCA~~~~~~   89 (112)
T d1sq2n_          69 INDLTVEDGGTYRCGLGVAGG   89 (112)
T ss_dssp             ECSCCGGGCEEEEEEECBTTT
T ss_pred             ecCCcCccCEEEeEEEecCCC
Confidence            678999999999998765543

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.027  Score=31.43  Aligned_cols=35  Identities=20%  Similarity=0.363  Sum_probs=24.7

Q ss_pred             eeeeCCceeEeecCCcEEEEeeecccCC----CeeEEEc
Q psy16421        103 IVKIPSQLIGAHEGQQLVLECISEAYPK----SVNYWTR  137 (151)
Q Consensus       103 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~----~~~~W~k  137 (151)
                      .+..+...+.+.+|+++.|.|.....+.    ..+.|++
T Consensus         6 ~Vt~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~   44 (124)
T d1eaja_           6 SITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLI   44 (124)
T ss_dssp             EESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEE
T ss_pred             EEEccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEE
Confidence            3344445577899999999999865433    2489986

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.83  E-value=0.049  Score=30.26  Aligned_cols=32  Identities=25%  Similarity=0.514  Sum_probs=24.8

Q ss_pred             eeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        105 KIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       105 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      ...|....+.+|+++.|.|.... ....+.|+|
T Consensus         3 tQsP~~~~~~~G~svtl~C~~s~-~~~~~~WYr   34 (114)
T d1ogae1           3 TQSPKYLFRKEGQNVTLSCEQNL-NHDAMYWYR   34 (114)
T ss_dssp             ECSCSEEEEETTCCEEECCEECS-CCSEEEEEE
T ss_pred             EEcCCeEEEcCCCCEEEEEEEec-CCCcEEEEe
Confidence            34567778999999999999753 345799996

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.096  Score=28.03  Aligned_cols=71  Identities=14%  Similarity=0.180  Sum_probs=41.7

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeee
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECIS  125 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~  125 (151)
                      .+|.+...|   ...+..|++++|.|.... ....+.++|++...............|.+    ..+...+.....|..
T Consensus         3 pkPsLsa~P---~~~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~~~~~~~~~a~F~i----~~v~~~~~G~Y~C~~   73 (93)
T d1olla2           3 DTPTLSVHP---GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPL----GPVTTAHRGTYRCFG   73 (93)
T ss_dssp             CCCEEEEES---CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEEEEECSSEEEEEE----EECCGGGCEEEEEEC
T ss_pred             CCCEEEEeC---CCcccCCCcEEEEECCCC-CCCEEEEEECCCccceeecCCCceeEEEe----cccChhcCceEEEEe
Confidence            467776665   346778999999999754 56788899844322111000111112222    235567788899964

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.82  E-value=0.058  Score=29.86  Aligned_cols=32  Identities=19%  Similarity=0.360  Sum_probs=24.4

Q ss_pred             eeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        105 KIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       105 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      ...|....+.+|+++.|.|...+ ....+.|+|
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYr   34 (112)
T d1kgce1           3 SQSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQ   34 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCCEEEEEE
T ss_pred             EECCCeEEECCCCCEEEEEEECC-CCCEEEeee
Confidence            34566777899999999998543 345699987

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=93.75  E-value=0.079  Score=29.28  Aligned_cols=29  Identities=24%  Similarity=0.413  Sum_probs=22.3

Q ss_pred             CceEeecCCeEEEEeeecCCC-CCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSP-PPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~-~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|...+.. ...+.|++
T Consensus         6 ~~~~~~~G~svtl~C~~s~~~~~~~~~WYr   35 (112)
T d1kgcd1           6 NSMESNEEEPVHLPCNHSTISGTDYIHWYR   35 (112)
T ss_dssp             SEEEEETTSCEEEEEEESCCCTTCCEEEEE
T ss_pred             CEEEECCCCCEEEEEEEeCCCccccEEEEE
Confidence            356778999999999976533 44589997

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=93.73  E-value=0.12  Score=27.91  Aligned_cols=39  Identities=26%  Similarity=0.405  Sum_probs=29.2

Q ss_pred             CCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCC
Q psy16421         46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG   88 (151)
Q Consensus        46 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~   88 (151)
                      ..+|.+...+   ...+..|++++|.|.... ....+.|+|++
T Consensus         4 ~pkPsLsa~P---~~~V~~G~~VTL~C~~~~-~~~~f~L~k~g   42 (99)
T d1nkra2           4 YEKPSLSAQP---GPTVLAGENVTLSCSSRS-SYDMYHLSREG   42 (99)
T ss_dssp             SCCCEEEEES---CSEECTTCEEEEEEEESS-CCSEEEEEETT
T ss_pred             CCCCEEEEeC---CCcccCCCeEEEEECCCC-CccEEEEEECC
Confidence            4567777766   346788999999999754 46678999943

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.022  Score=31.03  Aligned_cols=20  Identities=25%  Similarity=0.227  Sum_probs=16.2

Q ss_pred             CccccccCCeEEEEEEEcCC
Q psy16421          1 MTEVSREHMGAYLCIASNGV   20 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~   20 (151)
                      |.+|+.+|+|.|+|......
T Consensus        64 l~~v~~~~~G~Y~C~y~~~~   83 (98)
T d1ugna2          64 VGPVSPSRRWWYRCYAYDSN   83 (98)
T ss_dssp             ECCCCTTSCEEEEEEEECTT
T ss_pred             eeecccCCCeEEEEeeEcCC
Confidence            45788999999999886654

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.078  Score=27.43  Aligned_cols=32  Identities=16%  Similarity=0.361  Sum_probs=24.1

Q ss_pred             ecCCcEEEEeeecccCCCe--eEEEcCCceeccC
Q psy16421        114 HEGQQLVLECISEAYPKSV--NYWTREKGDMIAN  145 (151)
Q Consensus       114 ~~g~~~~l~C~~~g~p~~~--~~W~k~~~~~~~~  145 (151)
                      ..|..+.|+|.......+.  -.|+|+|..+...
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed   43 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKED   43 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECT
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEcccc
Confidence            4688889999986654433  9999998777654

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=93.69  E-value=0.088  Score=28.50  Aligned_cols=39  Identities=18%  Similarity=0.265  Sum_probs=28.9

Q ss_pred             CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCc
Q psy16421        100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKG  140 (151)
Q Consensus       100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~  140 (151)
                      -+|.|...+.. .+..|.+|+|.|.... +...+.|+|+|.
T Consensus         5 pkPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~k~g~   43 (99)
T d1nkra2           5 EKPSLSAQPGP-TVLAGENVTLSCSSRS-SYDMYHLSREGE   43 (99)
T ss_dssp             CCCEEEEESCS-EECTTCEEEEEEEESS-CCSEEEEEETTC
T ss_pred             CCCEEEEeCCC-cccCCCeEEEEECCCC-CccEEEEEECCC
Confidence            35677766654 4789999999998654 345699999874

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.67  E-value=0.034  Score=30.79  Aligned_cols=30  Identities=20%  Similarity=0.584  Sum_probs=23.6

Q ss_pred             CceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      |..+.+.+|+++.|.|.........+.|+|
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYr   35 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQ   35 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEe
Confidence            456778999999999987654445689986

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.66  E-value=0.086  Score=29.27  Aligned_cols=29  Identities=28%  Similarity=0.518  Sum_probs=22.8

Q ss_pred             CceEeecCCeEEEEeeecCC-CCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGS-PPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~-~~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|..... ....+.|++
T Consensus         7 ~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyr   36 (114)
T d3bp5a1           7 AWLTVSEGANATFTCSLSNWSEDLMLNWNR   36 (114)
T ss_dssp             SEEEEETTCCEEEEEEESCCCTTCEEEEEE
T ss_pred             CeEEECCCCCEEEEEEECCCCCcceEEEEE
Confidence            46778899999999997543 345688997

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=93.59  E-value=0.04  Score=30.59  Aligned_cols=27  Identities=19%  Similarity=0.338  Sum_probs=22.0

Q ss_pred             eEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ..+.+|+++.|+|.++|....  .+.|+|
T Consensus        10 ~~vkPG~Sl~LsC~~SG~t~~~~~~~WvR   38 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASGFTFNTDAMNWVR   38 (109)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CeECCCCCeEEEEEECCCcccccccccce
Confidence            457899999999999986544  488886

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.58  E-value=0.041  Score=30.29  Aligned_cols=32  Identities=25%  Similarity=0.549  Sum_probs=23.7

Q ss_pred             eecCCeEEEEeeecC-CC-CCeEEEEeCCeeeEec
Q psy16421         62 VREGSNVSMRCAASG-SP-PPSIMWRREGGEMITN   94 (151)
Q Consensus        62 ~~~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~~   94 (151)
                      +..++.+.|.|.+.+ .| ...+.|++ +++.+..
T Consensus        17 ~~~~~~~tl~C~~~~f~P~~i~v~W~~-~g~~~~~   50 (108)
T d1ow0a2          17 LALNELVTLTCLARGFSPKDVLVRWLQ-GSQELPR   50 (108)
T ss_dssp             TTSSSEEEEEEEEEEESSSCCEEEEEE-TTEECCG
T ss_pred             hccCCceEEEEEEEEeECCCEEEEEEE-CCeEcCC
Confidence            345789999999977 45 34899999 6666553

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.57  E-value=0.066  Score=30.07  Aligned_cols=28  Identities=14%  Similarity=0.413  Sum_probs=22.7

Q ss_pred             eeEeecCCcEEEEeeecccCCCe--eEEEc
Q psy16421        110 LIGAHEGQQLVLECISEAYPKSV--NYWTR  137 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~~--~~W~k  137 (151)
                      ...+.+|+.+.|+|.++|.....  +.|+|
T Consensus         8 ~~~~kPG~sl~LsC~~SG~~~~~y~~~WvR   37 (117)
T d1um5h1           8 PVLVKPGGSVKMSCKASEYTLTSYLFQWVK   37 (117)
T ss_dssp             CEEECTTCCEEEEEEESSCCCSCCEEEEEE
T ss_pred             CceECCCCCEEEEEEEccccCCCCcCccce
Confidence            45578899999999999976543  88986

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=93.56  E-value=0.061  Score=29.69  Aligned_cols=29  Identities=21%  Similarity=0.513  Sum_probs=23.2

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|.........+.|++
T Consensus         8 ~~~~~~~G~~vtl~C~~~~~~~~~~~WYr   36 (110)
T d1ac6a_           8 GQVALSEEDFLTIHCNYSASGYPALFWYV   36 (110)
T ss_dssp             SEEEEETTEEEEECEEEECSSCCEEEEEE
T ss_pred             CeEEECCCCCEEEEEEecCCCCcceEEEE
Confidence            45678899999999987655556789997

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.54  E-value=0.0038  Score=34.39  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=25.1

Q ss_pred             CceeEeecCCcEEEEeeeccc--CC-CeeEEEcCCce
Q psy16421        108 SQLIGAHEGQQLVLECISEAY--PK-SVNYWTREKGD  141 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~--p~-~~~~W~k~~~~  141 (151)
                      +....+..++.+.|.|.+.|.  |. ..|+|+++++.
T Consensus        10 Ps~~~~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~   46 (101)
T d1ow0a1          10 PALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGK   46 (101)
T ss_dssp             CCHHHHHHCSSCCCEEEETTCCSCCCCCCCBSSCSSC
T ss_pred             CCHHHHccCCCeEEEEEEeCCCCCcceEEEEEECCce
Confidence            444446678999999999985  44 35999987653

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=93.53  E-value=0.079  Score=29.40  Aligned_cols=29  Identities=14%  Similarity=0.373  Sum_probs=22.3

Q ss_pred             CceEeecCCeEEEEeeecCC--CCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGS--PPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~--~~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|...+.  ....+.|++
T Consensus         8 ~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyr   38 (113)
T d1vesa_           8 RTATKETGESLTINCVLRDASFELKDTGWYR   38 (113)
T ss_dssp             SEEEECTTCCEEEEEEEESCSSCCCEEEEEE
T ss_pred             CEEEEcCCCCEEEEEEECCCcccCCccceee
Confidence            45677889999999997643  345688996

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.52  E-value=0.068  Score=29.57  Aligned_cols=31  Identities=19%  Similarity=0.321  Sum_probs=24.1

Q ss_pred             eCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        106 IPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       106 ~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      ..|....+.+|+.+.|.|...+. ...+.|+|
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~-~~~~~WYr   34 (113)
T d2ntsp1           4 QTPRYLIKTRGQQVTLSCSPISG-HRSVSWYQ   34 (113)
T ss_dssp             EECSEEEEETTCCEEEEEECSTT-CCEEEEEE
T ss_pred             eCCCeEEECCCCCEEEEEEECCC-CCEEEEEE
Confidence            44667788999999999996542 35699997

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=93.52  E-value=0.051  Score=30.08  Aligned_cols=30  Identities=17%  Similarity=0.395  Sum_probs=23.2

Q ss_pred             CceeEeecCCcEEEEeeecccC--CCeeEEEc
Q psy16421        108 SQLIGAHEGQQLVLECISEAYP--KSVNYWTR  137 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~k  137 (151)
                      +.++.+.+|+++.|.|...+.-  ...+.|++
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYr   38 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQ   38 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEE
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCccccee
Confidence            3468899999999999876543  34599996

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.45  E-value=0.061  Score=28.82  Aligned_cols=30  Identities=20%  Similarity=0.556  Sum_probs=23.7

Q ss_pred             eEeecCCeEEEEeeecCCCCCeEEEEeCCe
Q psy16421         60 IMVREGSNVSMRCAASGSPPPSIMWRREGG   89 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~   89 (151)
                      +...+|++++|.|.........+.|++...
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~   33 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQ   33 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTC
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCC
Confidence            345689999999998776777899998443

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=93.44  E-value=0.065  Score=29.80  Aligned_cols=29  Identities=31%  Similarity=0.671  Sum_probs=23.1

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|.........+.|++
T Consensus         8 ~~v~v~~G~svtl~C~~~~~~~~~~~Wyr   36 (115)
T d1i9ea_           8 ARVTVSEGASLQLRCKYSYSATPYLFWYV   36 (115)
T ss_dssp             SEEEEETTSCEEECCEEECSSCCEEEEEE
T ss_pred             CeEEECCCCCEEEEEEEcCCCCCCEEEEE
Confidence            34677889999999997665566788996

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=93.38  E-value=0.062  Score=29.75  Aligned_cols=30  Identities=13%  Similarity=0.357  Sum_probs=23.5

Q ss_pred             CceeEeecCCcEEEEeeecccC---CCeeEEEc
Q psy16421        108 SQLIGAHEGQQLVLECISEAYP---KSVNYWTR  137 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p---~~~~~W~k  137 (151)
                      |.++.+.+|+++.|.|...+..   ...+.|+|
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYr   39 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQ   39 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeee
Confidence            5678899999999999976532   23489997

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.34  E-value=0.071  Score=29.09  Aligned_cols=33  Identities=15%  Similarity=0.506  Sum_probs=25.1

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      ++..|..+.+.+|+++.|.|..... ...+.|++
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~~-~~~~~WYr   35 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASSS-VNYMYWYQ   35 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESSC-CSCCEEEE
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCC-CCccEEEE
Confidence            3456778889999999999986432 34589996

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=93.32  E-value=0.056  Score=30.04  Aligned_cols=33  Identities=27%  Similarity=0.351  Sum_probs=25.4

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +...|..+.+.+|+++.|.|..... ...+.|+|
T Consensus         4 VtQ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYr   36 (113)
T d1nfdb1           4 VVQSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQ   36 (113)
T ss_dssp             CEEECSEEEEETTCCCEEEEECCTT-CCEEEEEE
T ss_pred             EEEcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEE
Confidence            4556777888999999999986432 34699997

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.30  E-value=0.056  Score=30.60  Aligned_cols=30  Identities=20%  Similarity=0.365  Sum_probs=23.7

Q ss_pred             CceeEeecCCcEEEEeeecccCCCe--eEEEc
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKSV--NYWTR  137 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~~--~~W~k  137 (151)
                      .....+.+|+++.|+|.++|...-.  +.|+|
T Consensus         8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvR   39 (122)
T d1vgeh1           8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVR   39 (122)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSEEEEEE
T ss_pred             cCCcEECCCCCEEEEEEEcCCCccCCCceeeE
Confidence            3445689999999999999876543  88886

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.26  E-value=0.075  Score=29.76  Aligned_cols=30  Identities=17%  Similarity=0.335  Sum_probs=23.7

Q ss_pred             CceeEeecCCcEEEEeeecccCCCe--eEEEc
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKSV--NYWTR  137 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~~--~~W~k  137 (151)
                      +....+.+|+++.|+|.++|.....  +.|.|
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvR   38 (116)
T d1mjuh1           7 PGAELVKPGASVKLSCKASGYTFTNYWINWVK   38 (116)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ECCcEECCCCCEEEEEEEccCccccCceEeee
Confidence            3445688999999999999866544  88986

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.07  Score=29.64  Aligned_cols=29  Identities=24%  Similarity=0.378  Sum_probs=22.4

Q ss_pred             CceEeecCCeEEEEeeecCC-CCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGS-PPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~-~~~~~~W~~   86 (151)
                      ...++.+|++++|.|..... ....+.|++
T Consensus         8 ~~~t~~~G~~vtL~C~~~~~~~~~~i~Wyr   37 (114)
T d1akjd_           8 LDRTWNLGETVELKCQVLLSNPTSGCSWLF   37 (114)
T ss_dssp             CSCCCCTTCCEEEEEEECCSSCCSCEEEEE
T ss_pred             CcEeccCCCcEEEEEEeCCCcCCCCEEEEE
Confidence            45677889999999997553 345689997

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.21  E-value=0.021  Score=32.02  Aligned_cols=19  Identities=21%  Similarity=0.370  Sum_probs=16.0

Q ss_pred             CccccccCCeEEEEEEEcC
Q psy16421          1 MTEVSREHMGAYLCIASNG   19 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~   19 (151)
                      |.+++.+|+|.|.|.+...
T Consensus        79 I~~l~~~Dsa~YyCa~~~~   97 (117)
T d1dqta_          79 IQGLRAVDTGLYLCKVELM   97 (117)
T ss_dssp             ECSCCGGGCEEEEEEEEEE
T ss_pred             hhcCccccCEeEEEEEecC
Confidence            5789999999999987543

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.19  E-value=0.062  Score=30.18  Aligned_cols=28  Identities=18%  Similarity=0.361  Sum_probs=22.2

Q ss_pred             eeEeecCCcEEEEeeecccCCCe--eEEEc
Q psy16421        110 LIGAHEGQQLVLECISEAYPKSV--NYWTR  137 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~~--~~W~k  137 (151)
                      ...+.+|+++.|+|.++|.....  +.|+|
T Consensus         9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~R   38 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKVSGYTLTELPVHWVR   38 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEE
Confidence            34578899999999999865443  88886

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.19  E-value=0.088  Score=29.11  Aligned_cols=33  Identities=24%  Similarity=0.599  Sum_probs=25.3

Q ss_pred             eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      +...|....+.+|+++.|.|.... -...+.|+|
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYr   35 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQDM-DHENMFWYR   35 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEESS-CCSEEEEEE
T ss_pred             EEccCCEEEECCCCCEEEEEEEcC-CccEEEeEE
Confidence            455677788899999999998532 245689997

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=93.18  E-value=0.08  Score=29.49  Aligned_cols=29  Identities=31%  Similarity=0.641  Sum_probs=22.7

Q ss_pred             CceEeecCCeEEEEeeecCC-CCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGS-PPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~-~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|..... ....+.|++
T Consensus         8 ~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyr   37 (116)
T d1tvda_           8 PDQTVASGSEVVLLCTYDTVYSNPDLFWYR   37 (116)
T ss_dssp             CCEEEETTCCEEECCEEECCSSSCCEEEEE
T ss_pred             CCEEEcCCCCEEEEEEEcCCccCCcEEEEE
Confidence            45778899999999986443 456789986

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.18  E-value=0.029  Score=31.14  Aligned_cols=21  Identities=24%  Similarity=0.577  Sum_probs=17.2

Q ss_pred             CccccccCCeEEEEEEEcCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVP   21 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~   21 (151)
                      |.+++++|+|.|.|-+....+
T Consensus        75 i~~~~~~Dsa~YyCA~~~~~~   95 (112)
T d2cdeb1          75 LESARPSHTSQYLCASSENIG   95 (112)
T ss_dssp             BSSCCTTTCSEEEEEEECSSS
T ss_pred             eccccccccccEEEEEecCCC
Confidence            568899999999998766544

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=93.18  E-value=0.1  Score=28.57  Aligned_cols=72  Identities=14%  Similarity=0.239  Sum_probs=38.4

Q ss_pred             cCCeEEEEeeecC-CC-CCeEEEEeCCeeeEecccCC----CCCCeeeeCCceeEeecCCcEEEEeeecccCC--Ce-eE
Q psy16421         64 EGSNVSMRCAASG-SP-PPSIMWRREGGEMITNSFNN----TVPPIVKIPSQLIGAHEGQQLVLECISEAYPK--SV-NY  134 (151)
Q Consensus        64 ~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~~~~~~----~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~-~~  134 (151)
                      .|+..+|.|.+.| .| ...+.|++ |+..+......    ...-.+... +...+...+.-.++|.+.....  +. .+
T Consensus        17 ~~~~~tL~C~v~gF~P~~i~V~W~~-ng~~~~~~~~~~~~~~~dgty~~~-S~L~v~~~~~~~ytC~V~H~~l~~p~~~~   94 (103)
T d1hdma1          17 FGKPNTLVCFVSNLFPPMLTVNWHD-HSVPVEGFGPTFVSAVDGLSFQAF-SYLNFTPEPSDIFSCIVTHEPDRYTAIAY   94 (103)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEE-TTEECSSCCCEEEEEETTTEEEEE-EEEEECCCTTCCEEEEEEETTTTEEEEEE
T ss_pred             cCCCeEEEEEEeeEECCCCEEEEEE-CCeecCCcEeceEEeCCCCcEEEE-EEEEEecCCCCEEEEEEEeCCCCCCEEEE
Confidence            4777899999988 45 45789999 56554321110    000111111 1122333333459999976443  33 67


Q ss_pred             EEc
Q psy16421        135 WTR  137 (151)
Q Consensus       135 W~k  137 (151)
                      |..
T Consensus        95 w~~   97 (103)
T d1hdma1          95 WVP   97 (103)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            754

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.10  E-value=0.028  Score=31.24  Aligned_cols=19  Identities=21%  Similarity=0.415  Sum_probs=16.2

Q ss_pred             CccccccCCeEEEEEEEcC
Q psy16421          1 MTEVSREHMGAYLCIASNG   19 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~   19 (151)
                      |.+++++|+|.|.|.+...
T Consensus        76 I~~~~~~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          76 VSTLELGDSALYLCASSLA   94 (113)
T ss_dssp             ECSCCGGGCEEEEEEEESS
T ss_pred             ECCCCcccceeeeeeeeCC
Confidence            5789999999999987654

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=93.10  E-value=0.11  Score=28.54  Aligned_cols=28  Identities=18%  Similarity=0.536  Sum_probs=22.3

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|...+ ....+.|++
T Consensus         9 ~~~~~~~G~~vtl~C~~s~-~~~~~~WYr   36 (110)
T d2aq2a1           9 RNKVAVTGEKVTLSCQQTN-NHNNMYWYR   36 (110)
T ss_dssp             SEEEECTTCCEEEEEEESS-CCSEEEEEE
T ss_pred             CeEEEcCCCCEEEEEEECC-CcCcEEEEE
Confidence            4567788999999999765 356789997

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.89  E-value=0.081  Score=30.27  Aligned_cols=28  Identities=18%  Similarity=0.229  Sum_probs=22.3

Q ss_pred             eeEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        110 LIGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ...+.+|+.+.|+|.++|....  .+.|+|
T Consensus         8 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvR   37 (130)
T d1rhhb1           8 AEVKKPGSSVQVSCKASGGTFSMYGFNWVR   37 (130)
T ss_dssp             CEEECTTCCEEEEEEETTSCCTTCEEEEEE
T ss_pred             CceECCCCCeEEEEEEeCCCccCCCcceEE
Confidence            4457899999999999986543  388886

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.86  E-value=0.14  Score=27.54  Aligned_cols=38  Identities=18%  Similarity=0.240  Sum_probs=27.3

Q ss_pred             CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCc
Q psy16421        101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKG  140 (151)
Q Consensus       101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~  140 (151)
                      .|.|...+..+ +..|++++|.|... .+...+.++|+|.
T Consensus         4 kP~Lsa~Ps~~-V~~G~~VTL~C~~~-~~~~~f~L~keg~   41 (96)
T d1ugna1           4 KPTLWAEPGSV-ITQGSPVTLRCQGG-QETQEYRLYREKK   41 (96)
T ss_dssp             CCEEEEESCSE-EETTCCEEEEEECC-TTCCCEEEEESSS
T ss_pred             CCEEEeECCCc-cCCCCcEEEEEeCC-CCCCEEEEEECCC
Confidence            56676666544 78999999999964 3344588888764

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.83  E-value=0.054  Score=30.52  Aligned_cols=28  Identities=18%  Similarity=0.402  Sum_probs=22.5

Q ss_pred             ceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      .+.+.+|++++|.|.........+.|++
T Consensus        10 sv~~~~G~svtl~C~~s~~~~~~i~WYr   37 (119)
T d1f3rb2          10 LLSASVGDRVTLSCKGSQNINNYLAWYQ   37 (119)
T ss_dssp             EECCCTTCCEEEEEECSSCCBTCEEEEE
T ss_pred             EEEECCCCCEEEEEEeCCCCcceeEEee
Confidence            4556789999999998765566789997

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.80  E-value=0.14  Score=27.23  Aligned_cols=28  Identities=21%  Similarity=0.302  Sum_probs=21.0

Q ss_pred             CCeEEEEeeecC-CC-CCeEEEEeCCeeeEe
Q psy16421         65 GSNVSMRCAASG-SP-PPSIMWRREGGEMIT   93 (151)
Q Consensus        65 g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~   93 (151)
                      +..+.|.|.+.| .| ...+.|++ +++.+.
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~-ng~~~~   44 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLR-NGLASG   44 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEE-CCEeCC
Confidence            457899999988 45 45899999 565543

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=92.80  E-value=0.12  Score=28.59  Aligned_cols=28  Identities=29%  Similarity=0.500  Sum_probs=20.9

Q ss_pred             ceEeecCCeEEEEeeecCC-----CCCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGS-----PPPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~-----~~~~~~W~~   86 (151)
                      .+.+.+|++++|.|...+.     ....+.|++
T Consensus        10 slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYr   42 (112)
T d1mjul1          10 SVPVTPGESVSISCRSSKSLLHSNGNTYLYWFL   42 (112)
T ss_dssp             EEEECTTSCEEEEEEESSCCBCTTSCBCEEEEE
T ss_pred             EEEECCCCCEEEEEEECCCCccCCCCceeEEEE
Confidence            4667789999999987553     244688986

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=92.79  E-value=0.043  Score=30.42  Aligned_cols=28  Identities=18%  Similarity=0.498  Sum_probs=21.6

Q ss_pred             ceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      .+.+.+|++++|.|.........+.|++
T Consensus         9 sl~~~~G~svtl~C~~~~~~~~~i~WYr   36 (109)
T d1w72l1           9 SVSVAPGQTARITCGGNNIGSRSVHWYQ   36 (109)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEE
T ss_pred             eEEECCCCCEEEEEEcCCCCCcceeeee
Confidence            3566789999999997654455689996

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=92.77  E-value=0.068  Score=30.13  Aligned_cols=27  Identities=22%  Similarity=0.341  Sum_probs=21.7

Q ss_pred             eEeecCCcEEEEeeecccCCCe--eEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKSV--NYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~~--~~W~k  137 (151)
                      ..+.+|+++.|+|.++|.....  +.|+|
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~R   37 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYR   37 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeee
Confidence            3478999999999999876543  88886

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.77  E-value=0.027  Score=31.64  Aligned_cols=19  Identities=16%  Similarity=0.347  Sum_probs=16.1

Q ss_pred             CccccccCCeEEEEEEEcC
Q psy16421          1 MTEVSREHMGAYLCIASNG   19 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~   19 (151)
                      |++++.+|+|.|.|.+...
T Consensus        79 I~~l~~~Dsa~YyCa~~~~   97 (118)
T d1i8lc_          79 IQGLRAMDTGLYICKVELM   97 (118)
T ss_dssp             ECSCCGGGCEEEEEEEEEE
T ss_pred             eeccccCCCEEEEEeEecc
Confidence            5789999999999987553

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=92.70  E-value=0.07  Score=30.11  Aligned_cols=27  Identities=22%  Similarity=0.147  Sum_probs=21.9

Q ss_pred             eEeecCCcEEEEeeecccCCCe--eEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKSV--NYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~~--~~W~k  137 (151)
                      ..+.+|+++.|+|.++|.....  +.|+|
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~y~~~W~R   38 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVYGGSFSDYYWSWIR   38 (120)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEE
T ss_pred             cEECCCCCEEEEEEEccccCccCcceeee
Confidence            3478899999999999976543  88886

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.67  E-value=0.08  Score=29.88  Aligned_cols=28  Identities=14%  Similarity=0.387  Sum_probs=21.8

Q ss_pred             eeEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        110 LIGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ...+.+|+.+.|+|.++|....  .+.|+|
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~R   38 (120)
T d1pg7x1           9 PELVKPGASVKISCKASGYSFTGHLLNWVK   38 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceee
Confidence            3457889999999999986533  488986

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.67  E-value=0.073  Score=29.37  Aligned_cols=28  Identities=18%  Similarity=0.491  Sum_probs=21.2

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      .+++.+|++++|.|...+..  ..-+.|++
T Consensus         9 s~sv~~G~svtL~C~~s~~~~~~~~i~Wyr   38 (111)
T d1cd0a_           9 SVSESPGKTVTISCTRSSGNIDSNYVQWYQ   38 (111)
T ss_dssp             EEEECTTSCEEEEEEESSSCGGGSCCEEEE
T ss_pred             eeEECCCCCEEEEEEECCCCccCceEEEee
Confidence            46677899999999986633  23488987

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=92.63  E-value=0.064  Score=28.67  Aligned_cols=22  Identities=23%  Similarity=0.471  Sum_probs=18.8

Q ss_pred             CCcEEEEeeecccCCCeeEEEc
Q psy16421        116 GQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       116 g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      |+++.|.|.........+.|+|
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyr   22 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYR   22 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEE
T ss_pred             CccEEEEEEEccccCCcEEEEE
Confidence            7899999998776667799997

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.61  E-value=0.044  Score=29.59  Aligned_cols=33  Identities=12%  Similarity=0.100  Sum_probs=23.6

Q ss_pred             eeEeecCCcEEEEeee-ccc-CCCeeEEEcCCcee
Q psy16421        110 LIGAHEGQQLVLECIS-EAY-PKSVNYWTREKGDM  142 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~-~g~-p~~~~~W~k~~~~~  142 (151)
                      .+....|+++.|.|.. ... ....|.|+|++..+
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i   38 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLV   38 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEE
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccce
Confidence            4566789999999974 232 23469999987655

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.58  E-value=0.065  Score=29.28  Aligned_cols=31  Identities=6%  Similarity=0.089  Sum_probs=23.7

Q ss_pred             eecCCcEEEEeeeccc-CC---CeeEEEcCCceec
Q psy16421        113 AHEGQQLVLECISEAY-PK---SVNYWTREKGDMI  143 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g~-p~---~~~~W~k~~~~~~  143 (151)
                      ...++.+.|.|.+.|. |.   ..+.|.++|..+.
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~   49 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVH   49 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEEC
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECC
Confidence            5568899999999984 54   3478999876654

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.55  E-value=0.087  Score=29.60  Aligned_cols=28  Identities=14%  Similarity=0.339  Sum_probs=22.5

Q ss_pred             eeEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        110 LIGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ...+.+|+.+.|+|.++|...-  .+.|+|
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvR   38 (118)
T d2jelh1           9 PELVRPGVSVKISCKGSGYTFTTYAMHWVK   38 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceecce
Confidence            3457899999999999987654  388886

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.47  E-value=0.099  Score=29.32  Aligned_cols=28  Identities=25%  Similarity=0.451  Sum_probs=22.3

Q ss_pred             eeEeecCCcEEEEeeecccCCCe--eEEEc
Q psy16421        110 LIGAHEGQQLVLECISEAYPKSV--NYWTR  137 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~~--~~W~k  137 (151)
                      ...+.+|+++.|+|.++|.....  +.|+|
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvR   38 (117)
T d1jnhb1           9 AELARPGASVKLSCRTSGYSFTTYWMQWVR   38 (117)
T ss_dssp             CEECCTTCCEEEEEEEESSCSSSSEEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeeee
Confidence            34568899999999999976553  88886

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=92.43  E-value=0.06  Score=30.24  Aligned_cols=31  Identities=6%  Similarity=0.109  Sum_probs=23.8

Q ss_pred             eecCCcEEEEeeeccc-CC---CeeEEEcCCceec
Q psy16421        113 AHEGQQLVLECISEAY-PK---SVNYWTREKGDMI  143 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g~-p~---~~~~W~k~~~~~~  143 (151)
                      ...+..+.|.|.+.|. |.   ..++|++||..+.
T Consensus        29 ~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~   63 (119)
T d1igtb3          29 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVH   63 (119)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECS
T ss_pred             cccCCceEEEEEeecccCCCCcEEEEEeeCCcccC
Confidence            3468899999999984 53   3589999987654

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=92.43  E-value=0.098  Score=28.68  Aligned_cols=29  Identities=21%  Similarity=0.448  Sum_probs=21.9

Q ss_pred             CceEeecCCeEEEEeeecCC-CCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGS-PPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~-~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|..... ....+.|++
T Consensus         9 ~~~~v~~G~tv~l~C~~~~~~~~~~~~WYr   38 (108)
T d2fx7l1           9 GTQSLSPGERATLSCRASQSVGNNKLAWYQ   38 (108)
T ss_dssp             SEEEECTTCCEEEEEEESSCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeecCCCCccceeEe
Confidence            45677789999999997553 344678987

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.40  E-value=0.092  Score=29.54  Aligned_cols=28  Identities=14%  Similarity=0.376  Sum_probs=22.2

Q ss_pred             eeEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        110 LIGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ...+.+|+++.|+|.++|....  .+.|+|
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvR   38 (119)
T d1eapb1           9 TELVKPGASVKISCKASGYISTDHAIHWVK   38 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CceECCCCCEEEEEEEccCcccCCCCccce
Confidence            3457889999999999987544  388986

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.34  E-value=0.095  Score=29.40  Aligned_cols=28  Identities=18%  Similarity=0.445  Sum_probs=21.8

Q ss_pred             eeEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        110 LIGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ...+.+|+++.|+|.++|....  .+.|+|
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~s~~~~~WvR   38 (117)
T d1mfah1           9 TVVARPGASVKMSCKASGYTFTNYWMHWIK   38 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             CceECCCCCEEEEEEEcccCCCCCceEeee
Confidence            4557899999999999986543  378876

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=92.32  E-value=0.1  Score=29.56  Aligned_cols=28  Identities=25%  Similarity=0.423  Sum_probs=22.5

Q ss_pred             eeEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        110 LIGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ...+.+|+.+.|+|.++|...-  .+.|+|
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~W~R   38 (124)
T d2b1hh1           9 AEVKKSGESLKISCQTSGYSFSDYWIGWVR   38 (124)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCcCccce
Confidence            3467899999999999997644  388886

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=92.29  E-value=0.18  Score=28.22  Aligned_cols=29  Identities=28%  Similarity=0.544  Sum_probs=22.6

Q ss_pred             CceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|...+..  ...+.|++
T Consensus         9 ~sv~v~~G~~vtL~C~~s~~~~~~~~~~Wyr   39 (120)
T d1hxma1           9 QTVPVSIGVPATLRCSMKGEAIGNYYINWYR   39 (120)
T ss_dssp             SEEEEETTCCEEEEEEECSSCGGGSEEEEEE
T ss_pred             CCEEECCCCCEEEEEEEeccCccCCcCeEEE
Confidence            456778899999999987643  35689986

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.28  E-value=0.11  Score=28.64  Aligned_cols=33  Identities=15%  Similarity=0.159  Sum_probs=24.2

Q ss_pred             eeCCceeEeecCCcEEEEeeecc----cCCCeeEEEc
Q psy16421        105 KIPSQLIGAHEGQQLVLECISEA----YPKSVNYWTR  137 (151)
Q Consensus       105 ~~~~~~~~~~~g~~~~l~C~~~g----~p~~~~~W~k  137 (151)
                      ...+..+.+..|+++.|.|....    .....+.|+|
T Consensus         3 v~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~   39 (119)
T d1neua_           3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRY   39 (119)
T ss_dssp             EECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEE
T ss_pred             EcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEE
Confidence            34566778999999999998542    2234699986

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=92.24  E-value=0.07  Score=29.82  Aligned_cols=27  Identities=26%  Similarity=0.516  Sum_probs=21.6

Q ss_pred             eEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ..+.+|+.+.|+|.++|....  .+.|+|
T Consensus        10 ~~vkpG~sl~LsC~~SG~~~s~~~~~WvR   38 (114)
T d1indh1          10 DSVKPGGSLKLSCAASGFTLSGETMSWVR   38 (114)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ceECCCCCEEEEEEECccCccCCceeccc
Confidence            357899999999999987544  388886

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=92.22  E-value=0.1  Score=29.07  Aligned_cols=28  Identities=21%  Similarity=0.547  Sum_probs=21.4

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      .+.+.+|++++|.|.+.+..  ...+.|++
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYr   38 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQ   38 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCccccee
Confidence            35667899999999976533  46788996

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=92.21  E-value=0.08  Score=29.70  Aligned_cols=27  Identities=22%  Similarity=0.396  Sum_probs=21.9

Q ss_pred             eEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ..+.+|+++.|+|.++|....  .+.|+|
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvR   38 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEYYMHWVR   38 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEcce
Confidence            457889999999999987643  488886

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=92.21  E-value=0.074  Score=29.82  Aligned_cols=27  Identities=22%  Similarity=0.247  Sum_probs=21.6

Q ss_pred             eEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ..+.+|+++.|+|.++|....  .+.|+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvR   38 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVR   38 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTSEEEEEE
T ss_pred             ceECCCCCEEEEEEEeeecCCCCcceece
Confidence            346789999999999987554  388886

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=92.17  E-value=0.18  Score=27.84  Aligned_cols=29  Identities=24%  Similarity=0.469  Sum_probs=20.9

Q ss_pred             CceEeecCCeEEEEeeecCCC----CCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSP----PPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~----~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|......    ...+.|++
T Consensus         9 ~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYr   41 (111)
T d2gsia1           9 ASLAVSLGQPATISCGASKSVRTSGYSYMDWNQ   41 (111)
T ss_dssp             SEEEEETTSCEEEEEEESSCCCCSSSCCEEEEE
T ss_pred             CEEEECCCCCEEEEEEECCCCccCCccceEEEE
Confidence            456778899999999865421    23488987

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.17  E-value=0.1  Score=29.19  Aligned_cols=27  Identities=15%  Similarity=0.319  Sum_probs=21.2

Q ss_pred             eEeecCCcEEEEeeecccCC--CeeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPK--SVNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~--~~~~W~k  137 (151)
                      ..+.+|+.+.|+|.++|...  -.+.|++
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~R   38 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVK   38 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeE
Confidence            35788999999999998643  3488886

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.14  E-value=0.1  Score=29.69  Aligned_cols=29  Identities=21%  Similarity=0.336  Sum_probs=23.0

Q ss_pred             ceeEeecCCcEEEEeeecccCCCe--eEEEc
Q psy16421        109 QLIGAHEGQQLVLECISEAYPKSV--NYWTR  137 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g~p~~~--~~W~k  137 (151)
                      ....+.+|+++.|+|.++|...-.  +.|+|
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvR   38 (127)
T d1n0xh1           8 GAEVKKPGASVKVSCQASGYRFSNFVIHWVR   38 (127)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCEEEEE
Confidence            345678999999999999865543  88986

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=92.03  E-value=0.12  Score=28.63  Aligned_cols=34  Identities=15%  Similarity=0.376  Sum_probs=25.0

Q ss_pred             eeeCCceeEeecCCcEEEEeeeccc---C---CCeeEEEc
Q psy16421        104 VKIPSQLIGAHEGQQLVLECISEAY---P---KSVNYWTR  137 (151)
Q Consensus       104 ~~~~~~~~~~~~g~~~~l~C~~~g~---p---~~~~~W~k  137 (151)
                      +...|..+.+.+|+++.|.|...+.   .   ...+.|+|
T Consensus         4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYr   43 (113)
T d1q9ra1           4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQ   43 (113)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEE
T ss_pred             EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEe
Confidence            3455778889999999999986542   1   13499997

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=92.01  E-value=0.16  Score=27.98  Aligned_cols=29  Identities=21%  Similarity=0.509  Sum_probs=21.9

Q ss_pred             CceEeecCCeEEEEeeecC-CCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASG-SPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g-~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|.... .....+.|++
T Consensus         8 ~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyr   37 (114)
T d2ak4d1           8 TEISVVEKEDVTLDCVYETRDTTYYLFWYK   37 (114)
T ss_dssp             CEEEEETTCCEEECCEEECSCSSCEEEEEE
T ss_pred             CeEEEeCCCCEEEEEEEcCCCcCccEEEEE
Confidence            4567889999999998543 3345678987

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.97  E-value=0.089  Score=28.78  Aligned_cols=29  Identities=14%  Similarity=0.366  Sum_probs=21.5

Q ss_pred             cCCeEEEEeeecC-CC-CCeEEEEeCCeeeEe
Q psy16421         64 EGSNVSMRCAASG-SP-PPSIMWRREGGEMIT   93 (151)
Q Consensus        64 ~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~   93 (151)
                      .++.++|.|.+.+ .| ...+.|++ +++.+.
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~-~g~~~~   48 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLH-NEVQLP   48 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEE-CCEECC
Confidence            4567999999877 45 46899999 565544

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=91.94  E-value=0.11  Score=29.09  Aligned_cols=28  Identities=14%  Similarity=0.336  Sum_probs=22.2

Q ss_pred             eeEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        110 LIGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ...+.+|+.+.|+|.++|....  .+.|+|
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~WvR   38 (118)
T d1nlbh1           9 PELKKPGETVKISCKASGYTFTDFSMHWVN   38 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeccc
Confidence            3457899999999999986543  488986

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.091  Score=28.67  Aligned_cols=29  Identities=24%  Similarity=0.628  Sum_probs=21.5

Q ss_pred             cCCeEEEEeeecC-CCCC-eEEEEeCCeeeEe
Q psy16421         64 EGSNVSMRCAASG-SPPP-SIMWRREGGEMIT   93 (151)
Q Consensus        64 ~g~~~~l~C~~~g-~~~~-~~~W~~~~~~~~~   93 (151)
                      .+.++.|.|.+.+ .|.. .+.|++ +|+.+.
T Consensus        20 ~~~tv~L~Cl~~~f~P~~i~v~W~~-~g~~~~   50 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGTIQITWLE-DGQVMD   50 (104)
T ss_dssp             CCSEEEEEEEEEEECCCCEEEEEEE-TTEECC
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEE-CCEEcc
Confidence            3567999999988 5544 689999 566654

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.85  E-value=0.087  Score=29.08  Aligned_cols=29  Identities=24%  Similarity=0.321  Sum_probs=22.0

Q ss_pred             ceeEeecCCcEEEEeeeccc--CCCeeEEEc
Q psy16421        109 QLIGAHEGQQLVLECISEAY--PKSVNYWTR  137 (151)
Q Consensus       109 ~~~~~~~g~~~~l~C~~~g~--p~~~~~W~k  137 (151)
                      ....+.+|+++.|.|...+.  ....+.|+|
T Consensus         7 ~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyr   37 (113)
T d1smoa_           7 EKYELKEGQTLDVKCDYTLEKFASSQKAWQI   37 (113)
T ss_dssp             EEEECCTTCCEEEEEECCHHHHTTSCEEEEE
T ss_pred             CcEEEccCCCEEEEEEeCCCCCCCCEEEEEE
Confidence            34567899999999987643  345689997

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=91.80  E-value=0.059  Score=29.73  Aligned_cols=28  Identities=21%  Similarity=0.453  Sum_probs=21.6

Q ss_pred             ceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      .+.+.+|++++|.|.........+.|++
T Consensus         8 s~~~~~G~svtl~C~~~~~~~~~i~WYr   35 (108)
T d1nfde1           8 SASVTVGETVKITCSGDQLPKNFAYWFQ   35 (108)
T ss_dssp             EEEEETTSCCCEEEEETTGGGSCCEEEE
T ss_pred             eeEECCCCCEEEEEECCCCCCccEEEEe
Confidence            4567789999999987554455688997

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.77  E-value=0.12  Score=29.38  Aligned_cols=28  Identities=18%  Similarity=0.339  Sum_probs=22.0

Q ss_pred             eeEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        110 LIGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ...+.+|+.+.|+|.++|...-  .+.|+|
T Consensus         9 ~~l~kPg~sl~LsC~~SG~~~~~y~~~WvR   38 (125)
T d1rihh1           9 NELAKPGASMKMSCRASGYSFTSYWIHWLK   38 (125)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CceECCCCCEEEEEEEccCCCCCCCCcccc
Confidence            3457889999999999986543  388876

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.75  E-value=0.053  Score=29.12  Aligned_cols=30  Identities=13%  Similarity=0.320  Sum_probs=23.0

Q ss_pred             eecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        113 AHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      -..|..|.|+|...+.  ..|.|-+|+..+..
T Consensus        11 SISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g   40 (100)
T d1jbja2          11 SISGTSVELTCPLDSD--ENLKWEKNGQELPQ   40 (100)
T ss_dssp             EEETTEEEEECSSCCC--TTCEEEETTEEECS
T ss_pred             EEeCCEEEEECCCCCC--CceEEeeccccCCC
Confidence            4579999999997653  46999998765544

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=91.73  E-value=0.11  Score=29.52  Aligned_cols=27  Identities=26%  Similarity=0.422  Sum_probs=22.0

Q ss_pred             eEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ..+.+|+++.|+|.++|....  .+.|+|
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvR   37 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFR   37 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCcccccccccccc
Confidence            357789999999999987654  388987

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=91.70  E-value=0.15  Score=28.63  Aligned_cols=28  Identities=18%  Similarity=0.413  Sum_probs=22.2

Q ss_pred             eeEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        110 LIGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ...+.+|+.+.|+|.++|...-  .+.|.|
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvR   38 (118)
T d1ct8b1           9 AVLVKPGASVKLSCKTSGFTFSSSYINWLK   38 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTCEEEEEE
T ss_pred             CceECCCCCEEEEEEEccccCCCCCCcccE
Confidence            3567889999999999986543  388886

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=91.66  E-value=0.16  Score=28.04  Aligned_cols=29  Identities=24%  Similarity=0.496  Sum_probs=22.3

Q ss_pred             CceEeecCCeEEEEeeecC-CCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASG-SPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g-~~~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|.... .....+.|++
T Consensus         7 ~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYr   36 (115)
T d1fo0a_           7 TSISVMEKTTVTMDCVYETQDSSYFLFWYK   36 (115)
T ss_dssp             CEEEEETTCCEEECCEECCCCSSCEEEEEE
T ss_pred             CEEEEcCCCCEEEEEEEcCCCCCCCCEEEE
Confidence            4577889999999998643 3455688997

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=91.60  E-value=0.085  Score=30.09  Aligned_cols=27  Identities=26%  Similarity=0.327  Sum_probs=21.5

Q ss_pred             eEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ..+.+|+++.|+|.++|....  .+.|+|
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~s~y~~~W~R   38 (127)
T d1i3ua_          10 GLVQAGDSLKLSCEASGDSIGTYVIGWFR   38 (127)
T ss_dssp             EECCTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCCCCCceEeee
Confidence            456789999999999986543  388986

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=91.56  E-value=0.1  Score=29.38  Aligned_cols=27  Identities=22%  Similarity=0.388  Sum_probs=21.5

Q ss_pred             eEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ..+.+|+++.|+|.++|....  .+.|+|
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~y~~~WvR   38 (120)
T d1dlfh_          10 GLVQPGGSMKLSCATSGFTFSDAWMDWVR   38 (120)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTCEEEEEE
T ss_pred             ceECCCCCeEEEEEECCccCcCCceEeee
Confidence            347889999999999987544  388886

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.45  E-value=0.1  Score=29.22  Aligned_cols=26  Identities=27%  Similarity=0.521  Sum_probs=21.4

Q ss_pred             EeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        112 GAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       112 ~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      .+.+|+.+.|+|.++|....  .+.|+|
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~W~R   38 (117)
T d1c5db1          11 LVQPSQTLSLTCTVSGFPLTTNGVSWVR   38 (117)
T ss_dssp             EECTTSCEEEEEEECSSCTTTCCEEEEE
T ss_pred             eECCCCCeEEEEEEcCCCccCCceEccc
Confidence            47899999999999987654  388886

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.40  E-value=0.14  Score=28.91  Aligned_cols=28  Identities=14%  Similarity=0.345  Sum_probs=21.8

Q ss_pred             eeEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        110 LIGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ...+.+|+.+.|+|.++|...-  .+.|+|
T Consensus         9 ~~~~kpG~sv~LsC~~SG~~~s~~~~~W~R   38 (121)
T d1j05b_           9 AELVEPGASVKLSCTASGFNIKDTYMHWVK   38 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             CceECCCCCEEEEEEEecCCCCCCCcceee
Confidence            3457899999999999886433  488986

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.35  E-value=0.09  Score=28.82  Aligned_cols=23  Identities=22%  Similarity=0.546  Sum_probs=18.8

Q ss_pred             cCCcEEEEeeecccCCC--eeEEEc
Q psy16421        115 EGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       115 ~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      +|+++.|+|.++|....  .+.|+|
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvR   25 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVK   25 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEE
Confidence            58999999999997554  488986

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=0.12  Score=27.75  Aligned_cols=22  Identities=5%  Similarity=0.070  Sum_probs=19.9

Q ss_pred             CccccccCCeEEEEEEEcCCCC
Q psy16421          1 MTEVSREHMGAYLCIASNGVPP   22 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~~~   22 (151)
                      |+++.++|+|.|...+.+..|.
T Consensus        67 IK~L~~~d~GtYkv~vYd~~Gk   88 (101)
T d1hnfa1          67 IKHLKTDDQDIYKVSIYDTKGK   88 (101)
T ss_dssp             ECSCCGGGCEEEEEEEEETTSC
T ss_pred             eeeeeecCCCcEEEEEEcCCCc
Confidence            5788999999999999999884

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=91.33  E-value=0.13  Score=28.82  Aligned_cols=27  Identities=19%  Similarity=0.327  Sum_probs=21.6

Q ss_pred             eEeecCCcEEEEeeecccCCCe--eEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKSV--NYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~~--~~W~k  137 (151)
                      ..+.+|+.+.|+|.++|.....  +.|+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~y~~~WvR   38 (116)
T d1a2yb_          10 GLVAPSQSLSITCTVSGFSLTGYGVNWVR   38 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEE
T ss_pred             ceECCCCCeEEEEEEcccccCCCCCccce
Confidence            3478899999999999865544  78886

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=91.31  E-value=0.14  Score=28.72  Aligned_cols=27  Identities=26%  Similarity=0.551  Sum_probs=21.9

Q ss_pred             eEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ..+.+|+.+.|+|.++|....  .+.|+|
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvR   38 (119)
T d1rz7h1          10 EVKKPGATVKISCKASGYTFSDFYMYWVR   38 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEccc
Confidence            456889999999999986654  388986

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.28  E-value=0.17  Score=28.74  Aligned_cols=28  Identities=21%  Similarity=0.349  Sum_probs=22.5

Q ss_pred             eeEeecCCcEEEEeeecccCCCe--eEEEc
Q psy16421        110 LIGAHEGQQLVLECISEAYPKSV--NYWTR  137 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~~--~~W~k  137 (151)
                      ...+.+|+++.|+|.++|...-.  +.|+|
T Consensus         8 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvR   37 (126)
T d1lmka1           8 TELMKPGRSLKISCKTTGYIFSNYWIEWVK   37 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCTTTEEEEEEE
T ss_pred             CceECCCCCeEEEEEEccCCCCCCCCccee
Confidence            34578899999999999976543  88886

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.28  E-value=0.068  Score=28.86  Aligned_cols=20  Identities=15%  Similarity=0.343  Sum_probs=16.8

Q ss_pred             CccccccCCeEEEEEEEcCC
Q psy16421          1 MTEVSREHMGAYLCIASNGV   20 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~~~   20 (151)
                      |.+++..|.|.|.|.|....
T Consensus        63 I~~~~~~~~g~y~C~a~~~g   82 (95)
T d1fltx_          63 ISNATYKEIGLLTCEATVNG   82 (95)
T ss_dssp             ESSCCGGGCEEEEEEEEETT
T ss_pred             EeCCCcccCeEEEEEEEECC
Confidence            46788999999999997764

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=91.25  E-value=0.16  Score=27.93  Aligned_cols=28  Identities=21%  Similarity=0.564  Sum_probs=21.1

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      .+.+.+|++++|.|...+..  ...+.|++
T Consensus         9 s~~v~~G~svtl~C~~s~~~~~~~~~~WYr   38 (111)
T d1rzfl1           9 SVSAAPGQKVTISCSGSSSNIGNNDVSWYQ   38 (111)
T ss_dssp             EEEECTTSCEEEEEECCCCCCCTSCEEEEE
T ss_pred             ceEeCCCCCEEEEEEECCcCCcCCccccee
Confidence            46677899999999875532  44589996

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=91.25  E-value=0.17  Score=28.53  Aligned_cols=27  Identities=26%  Similarity=0.418  Sum_probs=21.5

Q ss_pred             eEeecCCcEEEEeeecccCCCe--eEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKSV--NYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~~--~~W~k  137 (151)
                      ..+.+|+.+.|+|.++|.....  +.|.|
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvR   38 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFR   38 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeecc
Confidence            3578999999999999865443  78886

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=91.21  E-value=0.19  Score=27.87  Aligned_cols=28  Identities=29%  Similarity=0.603  Sum_probs=22.1

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|...+. ...+.||+
T Consensus         8 ~~~~~~~G~svtl~C~~s~~-~~~~~WYr   35 (115)
T d1ogad1           8 QFLSIQEGENLTVYCNSSSV-FSSLQWYR   35 (115)
T ss_dssp             SEEEEETTCCEEEEEECSSC-CSCEEEEE
T ss_pred             CeEEECCCCCEEEEEEECCC-CceEEEEe
Confidence            45677889999999997663 34689997

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=91.20  E-value=0.21  Score=27.57  Aligned_cols=29  Identities=24%  Similarity=0.366  Sum_probs=21.2

Q ss_pred             CceEeecCCeEEEEeeecCCC-----CCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSP-----PPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~-----~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|...+..     ..-+.|++
T Consensus         9 ~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYr   42 (112)
T d1ncwl1           9 KTISVTIGQPASISCKSSQRLLNSNGKTFLNWLL   42 (112)
T ss_dssp             SEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEE
T ss_pred             CEEEECCCCCEEEEEEECcccccCCCCcccEEEE
Confidence            356778899999999865432     24588986

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.18  E-value=0.22  Score=27.42  Aligned_cols=28  Identities=18%  Similarity=0.429  Sum_probs=20.2

Q ss_pred             ceEeecCCeEEEEeeecCCCC---CeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSPP---PSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~~---~~~~W~~   86 (151)
                      .+.+.+|++++|.|...+...   --+.|++
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~Wyr   39 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQ   39 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEE
Confidence            356778999999999864322   2378986

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.12  E-value=0.1  Score=28.35  Aligned_cols=29  Identities=14%  Similarity=0.582  Sum_probs=21.8

Q ss_pred             ecCCcEEEEeeecc-cCCC-e-eEEEcCCcee
Q psy16421        114 HEGQQLVLECISEA-YPKS-V-NYWTREKGDM  142 (151)
Q Consensus       114 ~~g~~~~l~C~~~g-~p~~-~-~~W~k~~~~~  142 (151)
                      ..++.+.|.|.+.| +|+. . +.|.+|+..+
T Consensus        17 ~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~   48 (102)
T d2fbjh2          17 LSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDI   48 (102)
T ss_dssp             SCCSSEEEEEEEEEEBSCCCEEEEESCCCSSC
T ss_pred             cCCCcEEEEEEEEcccCCCcEEEEEccCCCcC
Confidence            45788999999999 4653 3 7888876543

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.98  E-value=0.19  Score=28.56  Aligned_cols=27  Identities=19%  Similarity=0.310  Sum_probs=21.5

Q ss_pred             eEeecCCcEEEEeeecccCCCe--eEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKSV--NYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~~--~~W~k  137 (151)
                      ..+.+|+.+.|+|.++|.....  +.|.|
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~y~~~WvR   38 (127)
T d2fx7h1          10 EVKRPGSSVTVSCKASGGSFSTYALSWVR   38 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTSCEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCeEEEE
Confidence            4578899999999999865433  88886

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=90.95  E-value=0.11  Score=29.35  Aligned_cols=27  Identities=22%  Similarity=0.428  Sum_probs=21.7

Q ss_pred             eEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ..+.+|+++.|+|.++|....  .+.|+|
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvR   38 (122)
T d1q9rb1          10 GLVQSGGSLRLSCATSGFTFTDYYMSWVR   38 (122)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccCccc
Confidence            357889999999999986544  388985

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=90.88  E-value=0.12  Score=28.99  Aligned_cols=27  Identities=22%  Similarity=0.384  Sum_probs=21.8

Q ss_pred             eEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ..+.+|+.+.|+|.++|....  .+.|+|
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvR   38 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVR   38 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEE
T ss_pred             ceECCCCCeEEEEEECCCcccCCCccccc
Confidence            346889999999999997654  388886

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=90.85  E-value=0.12  Score=28.46  Aligned_cols=32  Identities=19%  Similarity=0.408  Sum_probs=24.2

Q ss_pred             eeCCceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        105 KIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       105 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      ...|....+.+|+.+.|.|..... ...+.|+|
T Consensus         2 ~QsP~~~~~~~G~svtL~C~~~~~-~~~~~WYr   33 (112)
T d2cdeb1           2 YQTPRYLVIGTGKKITLECSQTMG-HDKMYWYQ   33 (112)
T ss_dssp             EEECSEEEEETTCCBCCEEEETTC-CSEEEEEE
T ss_pred             EECCCEEEECCCCCEEEEEEEeCC-cccEEEEE
Confidence            345667788999999999986532 34699997

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=90.85  E-value=0.17  Score=28.43  Aligned_cols=27  Identities=19%  Similarity=0.410  Sum_probs=21.8

Q ss_pred             eEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ..+.+|+++.|+|.++|....  .+.|.|
T Consensus        10 ~~vkpg~sl~LsC~vSG~s~~~~~~~WvR   38 (120)
T d1ad9b1          10 EVKKPGSSVKVSCKASGYTFTDYYINWMR   38 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccccce
Confidence            457899999999999986544  488886

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=90.85  E-value=0.14  Score=28.83  Aligned_cols=27  Identities=26%  Similarity=0.406  Sum_probs=21.7

Q ss_pred             eEeecCCcEEEEeeecccCCC---eeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKS---VNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~---~~~W~k  137 (151)
                      ..+.+|+.+.|+|.++|....   .+.|+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~s~y~~~WvR   39 (119)
T d1ncwh1          10 GLVKPSQSLSLTCTVTGYSITSDFAWNWIR   39 (119)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEE
T ss_pred             cEECCCCCEEEEEEEccccccCCCccccce
Confidence            457899999999999997653   278876

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=90.83  E-value=0.2  Score=27.57  Aligned_cols=29  Identities=24%  Similarity=0.454  Sum_probs=20.4

Q ss_pred             CceEeecCCeEEEEeeecCCC----CCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSP----PPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~----~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|......    ...+.|++
T Consensus         9 ~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYr   41 (111)
T d1j05a_           9 ASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQ   41 (111)
T ss_dssp             SEEECCTTSCEEEEEEESSCCBSSSCBCEEEEE
T ss_pred             CEEEECCCCCEEEEEEeccCCccCCceeEEEEE
Confidence            345667899999999864321    23488997

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=90.82  E-value=0.21  Score=27.46  Aligned_cols=28  Identities=25%  Similarity=0.592  Sum_probs=22.2

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|.... ....+.|++
T Consensus         7 ~~~~~~~G~svtl~C~~s~-~~~~~~WYr   34 (114)
T d1ogae1           7 KYLFRKEGQNVTLSCEQNL-NHDAMYWYR   34 (114)
T ss_dssp             SEEEEETTCCEEECCEECS-CCSEEEEEE
T ss_pred             CeEEEcCCCCEEEEEEEec-CCCcEEEEe
Confidence            4567888999999999753 456789996

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=90.79  E-value=0.14  Score=28.76  Aligned_cols=27  Identities=26%  Similarity=0.399  Sum_probs=21.7

Q ss_pred             eEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ..+.+|+.+.|+|.++|....  .+.|+|
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~s~y~~~WvR   38 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFDFSKYWMSWVR   38 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ceECCCCCEEEEEEECCccccCCceeeee
Confidence            457889999999999997554  378885

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=90.72  E-value=0.14  Score=28.94  Aligned_cols=27  Identities=22%  Similarity=0.333  Sum_probs=21.6

Q ss_pred             eEeecCCcEEEEeeecccCCCe--eEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKSV--NYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~~--~~W~k  137 (151)
                      ..+.+|+.+.|+|.++|...-.  +.|+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvR   38 (122)
T d1bz7b1          10 GLVQPGGSRKLSCAASGFTFSNFGMHWVR   38 (122)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceEccc
Confidence            3467899999999999875443  88986

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=90.70  E-value=0.23  Score=27.23  Aligned_cols=28  Identities=25%  Similarity=0.644  Sum_probs=21.7

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|...+ ....+.||+
T Consensus         7 ~~~~~~~G~svtl~C~~~~-~~~~~~WYr   34 (111)
T d2esve1           7 SHSVIEKGQTVTLRCDPIS-GHDNLYWYR   34 (111)
T ss_dssp             SEEEEETTCCEEEEEECCT-TCSEEEEEE
T ss_pred             CEEEECCCCCEEEEEEECC-CCceEEEEE
Confidence            4567788999999998544 345789996

>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.66  E-value=0.075  Score=29.64  Aligned_cols=31  Identities=6%  Similarity=0.068  Sum_probs=23.2

Q ss_pred             EeecCCcEEEEeeecc-cCCC---eeEEEcCCcee
Q psy16421        112 GAHEGQQLVLECISEA-YPKS---VNYWTREKGDM  142 (151)
Q Consensus       112 ~~~~g~~~~l~C~~~g-~p~~---~~~W~k~~~~~  142 (151)
                      .+..+..+.|.|.+.| +|..   .+.|++++...
T Consensus        25 ~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~   59 (116)
T d1igyb3          25 TLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEV   59 (116)
T ss_dssp             HHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCB
T ss_pred             hcccCCCcEEEEEEecEeCCCCEEEEEECcCCeEc
Confidence            3567999999999998 4542   47788887654

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=90.65  E-value=0.082  Score=29.18  Aligned_cols=26  Identities=27%  Similarity=0.423  Sum_probs=18.5

Q ss_pred             EeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        112 GAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       112 ~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      .+.+|+++.|+|.++|....  .+.|+|
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvR   31 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYR   31 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEE
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEE
Confidence            35789999999999986433  378886

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=90.65  E-value=0.14  Score=29.05  Aligned_cols=27  Identities=22%  Similarity=0.449  Sum_probs=21.6

Q ss_pred             eEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ..+.+|+++.|+|.++|...-  .+.|+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvR   38 (126)
T d1dfbh1          10 GLVQPGRSLRLSCAASGFTFNDYAMHWVR   38 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ceECCCCCeEEEEEECCccccCCcceece
Confidence            347889999999999986544  388886

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=90.64  E-value=0.28  Score=27.06  Aligned_cols=29  Identities=21%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             CceEeecCCeEEEEeeecCCC-----CCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSP-----PPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~-----~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|...+..     ...+.|++
T Consensus        10 ~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYr   43 (113)
T d1n4xl_          10 LYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYL   43 (113)
T ss_dssp             SEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEE
T ss_pred             CEEEECCCCCEEEEEEeccccccCCCceEeEEEe
Confidence            456778899999999975422     24689996

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.60  E-value=0.12  Score=29.02  Aligned_cols=27  Identities=15%  Similarity=0.361  Sum_probs=21.0

Q ss_pred             eEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ..+.+|+++.|+|.++|....  .+.|+|
T Consensus        10 ~~~kpG~Sv~LsC~~SG~s~~~y~~~WyR   38 (119)
T d1qnzh_          10 ELVKPGASVKMSCKASGYTFTTYPIEWMK   38 (119)
T ss_dssp             CEECTTEEEEEEEEEETCCSSSSCEEEEE
T ss_pred             ceECCCCCEEEEEEEeccCCCCCCcceee
Confidence            357789999999999886432  388986

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=90.53  E-value=0.14  Score=29.40  Aligned_cols=27  Identities=22%  Similarity=0.381  Sum_probs=21.6

Q ss_pred             eEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ..+.+|+.+.|+|.++|....  .+.|+|
T Consensus        10 ~lvkPG~Sl~LsC~~SG~s~~~y~~~WvR   38 (135)
T d1ieha_          10 GLVQPGGSLRVSCAASGFTFSSYHMAWVR   38 (135)
T ss_dssp             CEECTTCEEEEEEEEESSCTTTSCEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceeccc
Confidence            457899999999999986543  388886

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.51  E-value=0.26  Score=26.68  Aligned_cols=28  Identities=29%  Similarity=0.546  Sum_probs=21.3

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|..... ...+.||+
T Consensus         8 ~~l~~~~G~~vtl~C~~s~~-~~~~~WYr   35 (104)
T d1yqvl1           8 AIMSASPGEKVTMTCSASSS-VNYMYWYQ   35 (104)
T ss_dssp             SEEEECTTCCEEEEEEESSC-CSCCEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCC-CCccEEEE
Confidence            45677789999999997543 34578997

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=90.48  E-value=0.13  Score=29.10  Aligned_cols=27  Identities=26%  Similarity=0.449  Sum_probs=21.5

Q ss_pred             eEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ..+.+|+.+.|+|.++|...-  .+.|+|
T Consensus        10 ~lvkPG~sl~LsC~~SG~s~~~y~~~WvR   38 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAASGFTFSSYTMSWVR   38 (123)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ceECCCCCEEEEEEECcccCcCCceEeee
Confidence            347889999999999986543  378886

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.43  E-value=0.19  Score=28.45  Aligned_cols=28  Identities=18%  Similarity=0.298  Sum_probs=22.2

Q ss_pred             eeEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        110 LIGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ...+.+|+++.|+|.++|....  .+.|.|
T Consensus         9 ~~~~kPG~sl~LsC~~SG~~~~~y~~~WvR   38 (124)
T d1yedb1           9 PELVRPGTSVKLSCKTSGYIFTSYWIHWLK   38 (124)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGSCEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCccCCccccce
Confidence            3457899999999999987544  388886

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.43  E-value=0.28  Score=27.13  Aligned_cols=30  Identities=13%  Similarity=-0.004  Sum_probs=22.0

Q ss_pred             CceeEeecCCcEEEEeeecccCCC---eeEEEc
Q psy16421        108 SQLIGAHEGQQLVLECISEAYPKS---VNYWTR  137 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p~~---~~~W~k  137 (151)
                      |..+.+.+|+.+.|.|.....-.+   .+.|+|
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~Wyr   38 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLR   38 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEE
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEE
Confidence            456678899999999997543222   488997

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=90.43  E-value=0.18  Score=28.63  Aligned_cols=27  Identities=30%  Similarity=0.439  Sum_probs=20.8

Q ss_pred             eEeecCCcEEEEeeecccCCCe--eEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKSV--NYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~~--~~W~k  137 (151)
                      ..+.+|+++.|+|.++|.....  +.|+|
T Consensus         9 ~lvkPg~sl~LsC~~SG~~~s~y~~~WvR   37 (126)
T d1rjca1           9 GSVQAGQSLRLSCATSGATSSSNCMGWFR   37 (126)
T ss_dssp             EEECTTCCEEEEEECC-CTTTCSEEEEEE
T ss_pred             ceECCCCCeEEEEEECCCCCcCCceEeee
Confidence            3568899999999999865544  88886

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=90.41  E-value=0.15  Score=28.75  Aligned_cols=28  Identities=25%  Similarity=0.450  Sum_probs=22.2

Q ss_pred             eeEeecCCcEEEEeeecccCCCe--eEEEc
Q psy16421        110 LIGAHEGQQLVLECISEAYPKSV--NYWTR  137 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~~--~~W~k  137 (151)
                      ...+.+|+.+.|+|.++|.....  +.|+|
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~~~~~WvR   38 (121)
T d1nfdf1           9 GDLVQPGSSLKVSCAASGFTFSDFWMYWVR   38 (121)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGEEEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceeece
Confidence            34578999999999999865443  78886

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.41  E-value=0.19  Score=28.55  Aligned_cols=27  Identities=15%  Similarity=0.225  Sum_probs=21.7

Q ss_pred             eEeecCCcEEEEeeecccCCCe--eEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKSV--NYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~~--~~W~k  137 (151)
                      ..+.+|+++.|+|.++|...-.  +.|+|
T Consensus        10 ~~~kpg~sl~LsC~~SG~s~~~y~~~WvR   38 (128)
T d2nxyd1          10 EVKKPGSSVKVSCKASGDTFIRYSFTWVR   38 (128)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGEEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCcccce
Confidence            4578999999999999976543  78876

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=90.36  E-value=0.24  Score=27.22  Aligned_cols=28  Identities=14%  Similarity=0.430  Sum_probs=21.2

Q ss_pred             ceEeecCCeEEEEeeecCC---CCCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGS---PPPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~---~~~~~~W~~   86 (151)
                      .+.+.+|++++|.|...+.   ....+.|++
T Consensus         9 s~~~~~G~svtl~C~~~~~~~~~~~~i~WYr   39 (112)
T d1lgva1           9 SVSGSPGQSITVSCTGVSSIVGSYNLVSWYQ   39 (112)
T ss_dssp             EEEECTTCCEEEEEECCCCSSSCCCCEEEEE
T ss_pred             cEEECCCCCEEEEEEeCCCCCCCCCcceeee
Confidence            4667789999999997653   234588997

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.34  E-value=0.26  Score=27.23  Aligned_cols=30  Identities=10%  Similarity=-0.013  Sum_probs=21.8

Q ss_pred             CceeEeecCCcEEEEeeecccC-CC--eeEEEc
Q psy16421        108 SQLIGAHEGQQLVLECISEAYP-KS--VNYWTR  137 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~p-~~--~~~W~k  137 (151)
                      +..+.+.+|+.+.|.|.....- ..  .+.|+|
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~Wyr   38 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLR   38 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEE
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEE
Confidence            4566788999999999964322 22  378997

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=90.32  E-value=0.17  Score=28.50  Aligned_cols=27  Identities=22%  Similarity=0.321  Sum_probs=20.7

Q ss_pred             eEeecCCcEEEEeeecccCC----CeeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPK----SVNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~----~~~~W~k  137 (151)
                      ..+.+|+++.|+|.++|...    ..+.|+|
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyR   40 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIR   40 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEE
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeecc
Confidence            34678999999999887532    3578996

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=90.32  E-value=0.35  Score=26.47  Aligned_cols=28  Identities=18%  Similarity=0.469  Sum_probs=21.9

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|++++|.|.... ....+.|++
T Consensus         7 ~~~~~~~G~svtl~C~~s~-~~~~~~WYr   34 (112)
T d2bnub1           7 KFQVLKTGQSMTLQCAQDM-NHEYMSWYR   34 (112)
T ss_dssp             SEEEEETTCCEEEEEEESS-CCSEEEEEE
T ss_pred             CeEEECCCCCEEEEEEEEC-CccceEecc
Confidence            4567788999999998754 356789996

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.29  E-value=0.065  Score=30.07  Aligned_cols=26  Identities=19%  Similarity=0.438  Sum_probs=21.0

Q ss_pred             EeecCCcEEEEeeecccCCCe--eEEEc
Q psy16421        112 GAHEGQQLVLECISEAYPKSV--NYWTR  137 (151)
Q Consensus       112 ~~~~g~~~~l~C~~~g~p~~~--~~W~k  137 (151)
                      .+.+|+++.|+|.++|.....  +.|+|
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvR   38 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSLTSFSVSWVR   38 (116)
T ss_dssp             BCCTTSEECCEEECCSSCTTSSEEEEEE
T ss_pred             eECCCCCeEEEEEEeCcccccCccceee
Confidence            367899999999999876543  88886

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=90.26  E-value=0.35  Score=27.13  Aligned_cols=28  Identities=21%  Similarity=0.464  Sum_probs=21.6

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      .++..+|++++|.|.+.|..  ...+.|++
T Consensus        10 s~t~~~g~t~~LsC~~sg~~~s~~~~~WYr   39 (123)
T d1hxmb1          10 SSTKTLSKTARLECVVSGITISATSVYWYR   39 (123)
T ss_dssp             EEEEETTCCEEEEEEEESSCTTTSCEEEEE
T ss_pred             eEEeCCCCCEEEEEEEcCCCcccCeEEEEE
Confidence            45667899999999987643  44688997

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.25  E-value=0.16  Score=28.97  Aligned_cols=28  Identities=18%  Similarity=0.271  Sum_probs=22.0

Q ss_pred             eeEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        110 LIGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ...+.+|+++.|+|.++|....  .+.|+|
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~s~y~~~WvR   38 (130)
T d1rzga1           9 AEVKKPGSSVKVSCKASGGTFSNYAINWVR   38 (130)
T ss_dssp             CEEECTTCCEEEEEECCSSCGGGCCEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceEccc
Confidence            3457889999999999986543  488886

>d2j88h1 b.1.1.2 (H:113-180) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.17  E-value=0.03  Score=28.30  Aligned_cols=25  Identities=16%  Similarity=0.595  Sum_probs=11.2

Q ss_pred             ecCCcEEEEeeecc-cCCC-eeEEEcC
Q psy16421        114 HEGQQLVLECISEA-YPKS-VNYWTRE  138 (151)
Q Consensus       114 ~~g~~~~l~C~~~g-~p~~-~~~W~k~  138 (151)
                      ...+.+.|.|.+.| +|.. .|+|..+
T Consensus        18 ~~~~~vtl~CL~~gF~P~~i~v~W~~~   44 (68)
T d2j88h1          18 QTNSMVTLGCLVKGYFPEPVTVTWNSG   44 (68)
T ss_dssp             ---------CEEEEEBSSCCCCCSCC-
T ss_pred             cCCCeEEEEEEEeceECCCcEEEECCC
Confidence            45788999999999 5554 4999443

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=90.05  E-value=0.17  Score=28.50  Aligned_cols=27  Identities=26%  Similarity=0.411  Sum_probs=21.1

Q ss_pred             eEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ..+.+|+++.|+|.++|....  .+.|+|
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~R   38 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFR   38 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEcce
Confidence            346889999999999986533  388886

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=89.95  E-value=0.27  Score=28.15  Aligned_cols=28  Identities=14%  Similarity=0.272  Sum_probs=22.1

Q ss_pred             eeEeecCCcEEEEeeecccCCCe--eEEEc
Q psy16421        110 LIGAHEGQQLVLECISEAYPKSV--NYWTR  137 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~~--~~W~k  137 (151)
                      ...+.+|+++.|+|.++|...-.  +.|+|
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~WvR   37 (133)
T d1rzfh1           8 AEVNKPGSSVKVSCQASGATLNSHAFSWVR   37 (133)
T ss_dssp             CEEECTTCCEEEEEEESSSCSTTEEEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCCccce
Confidence            34578999999999999875543  88876

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=89.93  E-value=0.26  Score=27.13  Aligned_cols=29  Identities=14%  Similarity=0.495  Sum_probs=22.1

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEeC
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRRE   87 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~   87 (151)
                      ..+.+.+|+++.|.|.... ....+.||+.
T Consensus         9 ~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ   37 (113)
T d1nfdb1           9 RHIIKEKGGRSVLTCIPIS-GHSNVVWYQQ   37 (113)
T ss_dssp             SEEEEETTCCCEEEEECCT-TCCEEEEEEB
T ss_pred             CEEEEeCCCCEEEEEEeCC-CCCEEEEEEE
Confidence            4567788999999999654 3457899973

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.90  E-value=0.12  Score=27.95  Aligned_cols=29  Identities=14%  Similarity=0.507  Sum_probs=21.3

Q ss_pred             cCCeEEEEeeecC-CC-CCeEEEEeCCeeeEe
Q psy16421         64 EGSNVSMRCAASG-SP-PPSIMWRREGGEMIT   93 (151)
Q Consensus        64 ~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~   93 (151)
                      .++.+.|.|.+.+ .| ...+.|++ +|+.+.
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~-~g~~~~   49 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKA-DSSPVK   49 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEE-CCEECC
Confidence            3667899999988 44 44789999 566544

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.85  E-value=0.24  Score=26.82  Aligned_cols=30  Identities=20%  Similarity=0.419  Sum_probs=21.7

Q ss_pred             CceeEeecCCcEEEEeeeccc-C-CCeeEEEc
Q psy16421        108 SQLIGAHEGQQLVLECISEAY-P-KSVNYWTR  137 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g~-p-~~~~~W~k  137 (151)
                      +..+.+.+|+.+.|.|..... . ...+.|+|
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r   34 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCK   34 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEE
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEE
Confidence            345678899999999986532 2 23578987

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.73  E-value=0.19  Score=27.17  Aligned_cols=28  Identities=18%  Similarity=0.530  Sum_probs=20.9

Q ss_pred             CCeEEEEeeecC-CC-CCeEEEEeCCeeeEe
Q psy16421         65 GSNVSMRCAASG-SP-PPSIMWRREGGEMIT   93 (151)
Q Consensus        65 g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~   93 (151)
                      +..+.|.|.+.| .| ...+.|++ +|+.+.
T Consensus        20 ~~~~tl~C~v~~f~P~~i~v~W~~-~g~~~~   49 (102)
T d1q0xl2          20 TAKATLVCTITDFYPGVVTVDWKV-DGTPVT   49 (102)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             CCeEEEEEEEeeeeCCCCEEEEEE-CCEECC
Confidence            567899999877 34 45799999 566654

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=89.51  E-value=0.026  Score=30.53  Aligned_cols=27  Identities=19%  Similarity=0.422  Sum_probs=20.9

Q ss_pred             eeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421        110 LIGAHEGQQLVLECISEAYPKSVNYWTR  137 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~p~~~~~W~k  137 (151)
                      ++++.+|+++.|.|...+. ...+.|+|
T Consensus         2 slsV~eG~~vtL~C~~~~~-~~~i~WYr   28 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKTS-INNLQWYR   28 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSSC-EEEEEEEC
T ss_pred             CceECCCCCEEEEEEEeCC-cccEEEEE
Confidence            3467899999999987542 34699997

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=89.48  E-value=0.22  Score=28.19  Aligned_cols=27  Identities=26%  Similarity=0.426  Sum_probs=21.3

Q ss_pred             eEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ..+.+|+.+.|+|.++|....  .+.|+|
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvR   38 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRISAHTMNWVR   38 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ceECCCCCeEEEEeECCccCcCcccCccc
Confidence            457889999999999985533  488886

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=89.18  E-value=0.19  Score=28.60  Aligned_cols=27  Identities=33%  Similarity=0.570  Sum_probs=21.2

Q ss_pred             eEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ..+.+|+++.|+|.++|....  .+.|+|
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvR   38 (127)
T d2fb4h1          10 GVVQPGRSLRLSCSSSGFIFSSYAMYWVR   38 (127)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ceECCCCCeEEEEEECCCCccCCceeeee
Confidence            346889999999999986543  388886

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=89.16  E-value=0.033  Score=30.09  Aligned_cols=27  Identities=26%  Similarity=0.645  Sum_probs=21.2

Q ss_pred             ceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      .++|.+|++++|.|.... ....+.|++
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYr   28 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYR   28 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEEC
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEE
Confidence            356789999999998754 345789997

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=89.08  E-value=0.33  Score=25.73  Aligned_cols=28  Identities=32%  Similarity=0.770  Sum_probs=21.0

Q ss_pred             CCeEEEEeeecC-CC-CCeEEEEeCCeeeEe
Q psy16421         65 GSNVSMRCAASG-SP-PPSIMWRREGGEMIT   93 (151)
Q Consensus        65 g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~   93 (151)
                      +..+.|.|.+.| .| ...+.|++ +++.+.
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~   44 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQ-DGVSLS   44 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeE-CCeEcC
Confidence            457899999988 45 45789999 566554

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.96  E-value=0.14  Score=28.22  Aligned_cols=32  Identities=19%  Similarity=0.517  Sum_probs=23.3

Q ss_pred             CCceeEeecCCcEEEEeeeccc---CCCeeEEEcC
Q psy16421        107 PSQLIGAHEGQQLVLECISEAY---PKSVNYWTRE  138 (151)
Q Consensus       107 ~~~~~~~~~g~~~~l~C~~~g~---p~~~~~W~k~  138 (151)
                      .|..+.+.+|+++.|.|.....   ....+.|+|.
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~   39 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQ   39 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEc
Confidence            4567888999999999986432   2334789873

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=88.85  E-value=0.43  Score=26.06  Aligned_cols=28  Identities=21%  Similarity=0.558  Sum_probs=21.6

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|.... ....+.|++
T Consensus         7 ~~~~~~~G~svtl~C~~~~-~~~~i~WYr   34 (112)
T d1kgce1           7 RYKVAKRGQDVALRCDPIS-GHVSLFWYQ   34 (112)
T ss_dssp             SEEEEETTCCEEEEEECCT-TCCEEEEEE
T ss_pred             CeEEECCCCCEEEEEEECC-CCCEEEeee
Confidence            4566788999999998643 345789997

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=88.84  E-value=0.21  Score=28.56  Aligned_cols=26  Identities=27%  Similarity=0.512  Sum_probs=21.0

Q ss_pred             EeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        112 GAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       112 ~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      .+.+|+++.|+|.++|....  .+.|+|
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~~~~~WvR   38 (131)
T d3c2ah1          11 LVKPGGSLRLTCVASGFTFSDVWLNWVR   38 (131)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             eECCCCCeEEEEEECCCCCcCCcccccc
Confidence            47889999999999986543  488886

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.76  E-value=0.38  Score=26.51  Aligned_cols=32  Identities=19%  Similarity=0.354  Sum_probs=22.8

Q ss_pred             CceeEeecCCcEEEEeeecc----cC---CCeeEEEcCC
Q psy16421        108 SQLIGAHEGQQLVLECISEA----YP---KSVNYWTREK  139 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~g----~p---~~~~~W~k~~  139 (151)
                      +..+++.+|+.+.|.|....    ..   ...+.|++..
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~   46 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAG   46 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEec
Confidence            56778999999999998641    11   1247898753

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.68  E-value=0.28  Score=25.87  Aligned_cols=30  Identities=20%  Similarity=0.453  Sum_probs=22.5

Q ss_pred             eecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421        113 AHEGQQLVLECISEAYPKSVNYWTREKGDMIA  144 (151)
Q Consensus       113 ~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~  144 (151)
                      -..|..|.|+|.-.  ....+.|.+|+..+..
T Consensus         7 sISGTtV~LTCP~~--~~~~i~W~~n~~~~~~   36 (91)
T d1xiwa_           7 SISGTTVILTCPQY--PGSEILWQHNDKNIGG   36 (91)
T ss_dssp             EEETTEEEEECSSC--TTSCEEEEETTEEESS
T ss_pred             EEeCCEEEEECCCC--CCCceeeeeccccccC
Confidence            35799999999743  3467999998766554

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.67  E-value=0.25  Score=26.88  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=19.8

Q ss_pred             eecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         62 VREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        62 ~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      +.+|+++.|.|.........+.|+|
T Consensus        11 v~~G~~V~L~c~~~p~~~~~~~W~k   35 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLALGAFAWYK   35 (107)
T ss_dssp             CCTTCCEEEEEESCCTTCSEEEEEE
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEe
Confidence            4589999999985444467899998

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.65  E-value=0.33  Score=26.08  Aligned_cols=29  Identities=24%  Similarity=0.562  Sum_probs=21.5

Q ss_pred             cCCeEEEEeeecC-CC-CCeEEEEeCCeeeEe
Q psy16421         64 EGSNVSMRCAASG-SP-PPSIMWRREGGEMIT   93 (151)
Q Consensus        64 ~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~   93 (151)
                      .++.+.|.|.+.| .| ...+.|++ +++...
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~-~g~~~~   48 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWES-NGQPEN   48 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEE-CCEECC
Confidence            3677899999988 45 45899999 565544

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=88.43  E-value=0.52  Score=25.72  Aligned_cols=28  Identities=21%  Similarity=0.523  Sum_probs=21.4

Q ss_pred             CceEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|.... ....+.||+
T Consensus         8 ~~~~~~~G~~v~l~C~~~~-~~~~~~WYr   35 (113)
T d1j8he1           8 RYLVKRTGEKVFLECVQDM-DHENMFWYR   35 (113)
T ss_dssp             SEEEEETTCCEEECEEESS-CCSEEEEEE
T ss_pred             CEEEECCCCCEEEEEEEcC-CccEEEeEE
Confidence            4566778999999998643 346788997

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=88.31  E-value=0.53  Score=26.24  Aligned_cols=28  Identities=29%  Similarity=0.590  Sum_probs=21.8

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|++++|.|.+.|..  .-.+.|++
T Consensus         8 ~~~~kPG~sl~LsC~~SG~~~~~y~~~WvR   37 (117)
T d1um5h1           8 PVLVKPGGSVKMSCKASEYTLTSYLFQWVK   37 (117)
T ss_dssp             CEEECTTCCEEEEEEESSCCCSCCEEEEEE
T ss_pred             CceECCCCCEEEEEEEccccCCCCcCccce
Confidence            45677899999999998854  34678886

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=88.29  E-value=0.3  Score=27.56  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=19.9

Q ss_pred             EeecCCcEEEEeeecccCCC----eeEEEc
Q psy16421        112 GAHEGQQLVLECISEAYPKS----VNYWTR  137 (151)
Q Consensus       112 ~~~~g~~~~l~C~~~g~p~~----~~~W~k  137 (151)
                      .+.+|+.+.|+|.++|....    .+.|+|
T Consensus        11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~R   40 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIR   40 (123)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEE
T ss_pred             eECCCCCeEEEEEEcCCccCCCCCeeeccc
Confidence            46789999999999885422    367986

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=88.28  E-value=0.29  Score=27.98  Aligned_cols=27  Identities=22%  Similarity=0.267  Sum_probs=20.9

Q ss_pred             eEeecCCcEEEEeeecccCC----CeeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPK----SVNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~----~~~~W~k  137 (151)
                      ..+.+|+++.|+|.++|...    ..+.|+|
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyR   40 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIR   40 (132)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTCEEEEEE
T ss_pred             eeECCCCCeEEEEEEeCCCcCCCCCceEEEE
Confidence            34788999999999987542    2478986

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.96  E-value=0.9  Score=24.16  Aligned_cols=70  Identities=17%  Similarity=0.334  Sum_probs=39.2

Q ss_pred             CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecc---cCC----CCCCeeeeCCceeEeecCCcE
Q psy16421         47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS---FNN----TVPPIVKIPSQLIGAHEGQQL  119 (151)
Q Consensus        47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~---~~~----~~~p~~~~~~~~~~~~~g~~~  119 (151)
                      .+|.+...+   ...+..|++++|.|.... ....+..+|+ +......   ...    .....|.+..    +...+..
T Consensus         3 pkPsLsa~P---~~~v~~G~~VTL~C~~~~-~~~~f~L~k~-g~~~~~~~~~~~~~~~~~~~a~F~l~~----v~~~~~G   73 (98)
T d1ugna2           3 IKPTLSAQP---SPVVNSGGNVTLQCDSQV-AFDGFILCKE-GEDEHPQCLNSQPHARGSSRAIFSVGP----VSPSRRW   73 (98)
T ss_dssp             CCCEEEEES---CSEEETTCCEEEEEECSS-CCSEEEEEEC-------CEEEC------CCEEEEEECC----CCTTSCE
T ss_pred             CCCEEEeeC---CCccCCCCcEEEEeCCCC-CCCEEEEEEC-CCcCCcEeeeeEEcCCCceEEEEEeee----cccCCCe
Confidence            456666665   246788999999999754 4567777784 4321100   000    0112344332    4567888


Q ss_pred             EEEeee
Q psy16421        120 VLECIS  125 (151)
Q Consensus       120 ~l~C~~  125 (151)
                      ...|.-
T Consensus        74 ~Y~C~y   79 (98)
T d1ugna2          74 WYRCYA   79 (98)
T ss_dssp             EEEEEE
T ss_pred             EEEEee
Confidence            999975

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.93  E-value=0.29  Score=26.35  Aligned_cols=28  Identities=21%  Similarity=0.475  Sum_probs=20.8

Q ss_pred             CCeEEEEeeecC-CC-CCeEEEEeCCeeeEe
Q psy16421         65 GSNVSMRCAASG-SP-PPSIMWRREGGEMIT   93 (151)
Q Consensus        65 g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~   93 (151)
                      .+.+.|.|.+.+ .| ...+.|++ +++.+.
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~-~g~~~~   47 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQW-NGQPAE   47 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEE-CCEEcc
Confidence            467899999988 45 56799999 565543

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.92  E-value=0.28  Score=26.68  Aligned_cols=28  Identities=18%  Similarity=0.411  Sum_probs=21.0

Q ss_pred             CCeEEEEeeecC-CC-CCeEEEEeCCeeeEe
Q psy16421         65 GSNVSMRCAASG-SP-PPSIMWRREGGEMIT   93 (151)
Q Consensus        65 g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~   93 (151)
                      +..+.|.|.+.| .| ...+.|++ +|+.+.
T Consensus        20 ~~~~tL~Cl~~~f~P~~i~v~W~~-ng~~~~   49 (107)
T d1mjul2          20 SGGASVVCFLNNFYPKDINVKWKI-DGSERQ   49 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             CCceEEEEEEEEeECCCCEEEEEE-CCEEcc
Confidence            567899999877 44 35799998 566554

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=87.73  E-value=0.87  Score=24.18  Aligned_cols=70  Identities=16%  Similarity=0.223  Sum_probs=39.6

Q ss_pred             CCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeee-Eeccc----CCCCCCeeeeCCceeEeecCCcEEEE
Q psy16421         48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEM-ITNSF----NNTVPPIVKIPSQLIGAHEGQQLVLE  122 (151)
Q Consensus        48 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~-~~~~~----~~~~~p~~~~~~~~~~~~~g~~~~l~  122 (151)
                      +|.+...+   ...+..|++++|.|.... ....+.++|++... .....    .......|.+..    +...+.....
T Consensus         2 KPsLsa~P---~~~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~----v~~~~~G~Y~   73 (96)
T d1nkra1           2 KPSLLAHP---GPLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISR----MTQDLAGTYR   73 (96)
T ss_dssp             CCEEEEES---CSEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESS----CCGGGCEEEE
T ss_pred             CCEEEeeC---CCccCCCCcEEEEECCCC-CCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcc----cCcccCeEEE
Confidence            45555544   346778999999999764 45678888844321 11000    001112344332    4456778888


Q ss_pred             eee
Q psy16421        123 CIS  125 (151)
Q Consensus       123 C~~  125 (151)
                      |.-
T Consensus        74 C~y   76 (96)
T d1nkra1          74 CYG   76 (96)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            964

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=87.71  E-value=0.35  Score=26.00  Aligned_cols=27  Identities=19%  Similarity=0.539  Sum_probs=20.5

Q ss_pred             cCCeEEEEeeecC-CC-CCeEEEEeCCeee
Q psy16421         64 EGSNVSMRCAASG-SP-PPSIMWRREGGEM   91 (151)
Q Consensus        64 ~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~   91 (151)
                      .++.+.|.|.+.| .| ...+.|++ +|+.
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~-~g~~   46 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTN-NGKT   46 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEE-TTEE
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEE-CCEE
Confidence            3678999999987 45 46899999 5554

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=87.67  E-value=0.28  Score=27.54  Aligned_cols=26  Identities=27%  Similarity=0.498  Sum_probs=20.5

Q ss_pred             EeecCCcEEEEeeecccCC--C--eeEEEc
Q psy16421        112 GAHEGQQLVLECISEAYPK--S--VNYWTR  137 (151)
Q Consensus       112 ~~~~g~~~~l~C~~~g~p~--~--~~~W~k  137 (151)
                      .+.+|+++.|+|.++|...  .  .+.|+|
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~s~y~~~W~R   40 (120)
T d1ai1h1          11 VIKPSQSLSLTCIVSGFSITRTNYCWHWIR   40 (120)
T ss_dssp             EECSSSCEEEEEEEESSCTTSTTEEEEEEE
T ss_pred             eECCCCCEEEEEEEcccccccCccccCccc
Confidence            4688999999999998643  2  378976

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=87.37  E-value=0.2  Score=27.34  Aligned_cols=30  Identities=13%  Similarity=0.181  Sum_probs=21.5

Q ss_pred             eecCCeEEEEeeecC-CC-CCeEEEEeCCeeeE
Q psy16421         62 VREGSNVSMRCAASG-SP-PPSIMWRREGGEMI   92 (151)
Q Consensus        62 ~~~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~   92 (151)
                      ...+.++.|.|.+.+ .| ...+.|++ +++.+
T Consensus        21 ~~~~~~~~l~Clv~~f~P~~i~v~W~~-~g~~~   52 (107)
T d1hxmb2          21 TKLQKAGTYLCLLEKFFPDVIKIHWEE-KKSNT   52 (107)
T ss_dssp             GGSSSCEEEEEEEEEESSCCEEEEEEE-SSSCC
T ss_pred             HccCCcEEEEEEEeEEeCCceEEEEEE-CCeEc
Confidence            445678999999988 44 34689999 55544

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=87.25  E-value=0.48  Score=26.38  Aligned_cols=28  Identities=18%  Similarity=0.339  Sum_probs=21.1

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      .+...+|+++.|.|...+..  ...+.|++
T Consensus        10 sv~~~~G~svtL~C~~~~~~~~~~~i~WYr   39 (120)
T d1ypzf1          10 SISRPRDETAQISCKVFIESFRSVTIHWYR   39 (120)
T ss_dssp             EEEEETTSCEEEEEEECCGGGGGCCEEEEE
T ss_pred             EEEecCCCcEEEEEEEecccccCCcccEEE
Confidence            45666899999999976532  45688997

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.16  E-value=0.47  Score=25.60  Aligned_cols=29  Identities=14%  Similarity=0.297  Sum_probs=20.9

Q ss_pred             CceEeecCCeEEEEeeecCC--CCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGS--PPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~--~~~~~~W~~   86 (151)
                      +.+...+|+++.|.|.....  ....+.|++
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r   34 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCK   34 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEE
Confidence            45677789999999986432  234568987

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=86.43  E-value=0.37  Score=27.30  Aligned_cols=26  Identities=27%  Similarity=0.456  Sum_probs=21.0

Q ss_pred             EeecCCcEEEEeeecccCCC---eeEEEc
Q psy16421        112 GAHEGQQLVLECISEAYPKS---VNYWTR  137 (151)
Q Consensus       112 ~~~~g~~~~l~C~~~g~p~~---~~~W~k  137 (151)
                      .+.+|+++.|+|.++|....   .+.|+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y~~~WvR   39 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGYYWNWIR   39 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSSEEEEEE
T ss_pred             eECCCCCEEEEEEEecccccCCCcceeee
Confidence            46789999999999987542   478986

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.40  E-value=0.51  Score=25.88  Aligned_cols=28  Identities=29%  Similarity=0.468  Sum_probs=22.2

Q ss_pred             eeEeecCCcEEEEeeeccc--CCCeeEEEc
Q psy16421        110 LIGAHEGQQLVLECISEAY--PKSVNYWTR  137 (151)
Q Consensus       110 ~~~~~~g~~~~l~C~~~g~--p~~~~~W~k  137 (151)
                      ...+.+|+++.|.|...+.  ..-...|.|
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~r   33 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQR   33 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEE
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEE
Confidence            4568899999999998764  344689997

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=86.29  E-value=0.5  Score=26.47  Aligned_cols=26  Identities=23%  Similarity=0.571  Sum_probs=19.3

Q ss_pred             EeecCCeEEEEeeecCCC----CCeEEEEe
Q psy16421         61 MVREGSNVSMRCAASGSP----PPSIMWRR   86 (151)
Q Consensus        61 ~~~~g~~~~l~C~~~g~~----~~~~~W~~   86 (151)
                      .+..|+++.|.|.+.|..    ...+.|++
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyR   40 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIR   40 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEE
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeecc
Confidence            456799999999987632    23578996

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.19  E-value=0.46  Score=25.51  Aligned_cols=27  Identities=30%  Similarity=0.555  Sum_probs=19.9

Q ss_pred             CCeEEEEeeecC-CC-CCeEEEEeCCeeeE
Q psy16421         65 GSNVSMRCAASG-SP-PPSIMWRREGGEMI   92 (151)
Q Consensus        65 g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~   92 (151)
                      .+.+.|.|.+.| .| ...+.|++ +++..
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~-~g~~~   47 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKM-NGQPQ   47 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEE-TTEEC
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEE-CCeec
Confidence            467899999877 34 45799999 55553

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=86.03  E-value=0.14  Score=28.67  Aligned_cols=27  Identities=22%  Similarity=0.463  Sum_probs=21.3

Q ss_pred             eEeecCCcEEEEeeecccCCC--eeEEEc
Q psy16421        111 IGAHEGQQLVLECISEAYPKS--VNYWTR  137 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g~p~~--~~~W~k  137 (151)
                      ..+.+|+++.|+|.++|....  .+.|+|
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvR   38 (117)
T d1b2wh1          10 GVVQPGRSLKLSCLASGYIFTSSWINWVK   38 (117)
T ss_dssp             CEECTTSCEEEEEECCHHHHTTSEECEEE
T ss_pred             ceECCCCCEEEEEEECCCCCcCCcccccc
Confidence            357899999999999986433  477876

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=85.83  E-value=0.54  Score=26.55  Aligned_cols=26  Identities=27%  Similarity=0.348  Sum_probs=19.7

Q ss_pred             EeecCCcEEEEeeecccCCC----eeEEEc
Q psy16421        112 GAHEGQQLVLECISEAYPKS----VNYWTR  137 (151)
Q Consensus       112 ~~~~g~~~~l~C~~~g~p~~----~~~W~k  137 (151)
                      .+.+|+.+.|+|.++|....    .+.|+|
T Consensus        11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~R   40 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIR   40 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEE
T ss_pred             eECCCCCEEEEEEEeCCccCCCCCCCeEEe
Confidence            56789999999999875432    367875

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.83  E-value=0.33  Score=26.39  Aligned_cols=29  Identities=14%  Similarity=0.464  Sum_probs=21.1

Q ss_pred             cCCeEEEEeeecC-CC-CCeEEEEeCCeeeEe
Q psy16421         64 EGSNVSMRCAASG-SP-PPSIMWRREGGEMIT   93 (151)
Q Consensus        64 ~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~   93 (151)
                      ....+.|.|.+.+ .| ...+.|++ |++...
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~-ng~~~~   49 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKV-DNALQS   49 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEE-CCEECC
Confidence            3578999999887 45 35799999 555543

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.82  E-value=0.51  Score=25.38  Aligned_cols=17  Identities=24%  Similarity=0.145  Sum_probs=14.4

Q ss_pred             eEeecCCcEEEEeeecc
Q psy16421        111 IGAHEGQQLVLECISEA  127 (151)
Q Consensus       111 ~~~~~g~~~~l~C~~~g  127 (151)
                      +.+..|+++.|.|....
T Consensus         4 V~a~~G~tv~L~C~~~~   20 (110)
T d1ncna_           4 IQAYFNETADLPCQFAN   20 (110)
T ss_dssp             EEEETTSCEEEECCCCC
T ss_pred             EEEEeCCcEEEEEEEeC
Confidence            56789999999999754

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=85.72  E-value=0.18  Score=28.47  Aligned_cols=30  Identities=20%  Similarity=0.526  Sum_probs=22.0

Q ss_pred             ecCCeEEEEeeecC-CC-CCeEEEEeCCeeeEe
Q psy16421         63 REGSNVSMRCAASG-SP-PPSIMWRREGGEMIT   93 (151)
Q Consensus        63 ~~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~   93 (151)
                      ..+..+.|.|.+.| .| ...+.|++ +++.+.
T Consensus        18 ~~~~~~tL~C~v~gf~P~~i~v~W~~-~g~~~~   49 (127)
T d1ogae2          18 SHTQKATLVCLATGFYPDHVELSWWV-NGKEVH   49 (127)
T ss_dssp             HHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEEC
T ss_pred             ccCCcEEEEEEEEeccCCCeEEEEEE-CCEEcc
Confidence            34678999999988 44 34789999 666654

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.52  E-value=0.67  Score=24.13  Aligned_cols=29  Identities=10%  Similarity=0.219  Sum_probs=20.7

Q ss_pred             ecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421        114 HEGQQLVLECISEAYPKSVNYWTREKGDMIAN  145 (151)
Q Consensus       114 ~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~  145 (151)
                      .+...|.|.|-..   ...+.|++++..+...
T Consensus        20 ~~dGsV~L~Cn~~---~k~i~W~kdg~~i~~~   48 (86)
T d1jbja1          20 RGDGSVLLTCGLT---DKTIKWLKDGSIISPL   48 (86)
T ss_dssp             SSSCEEEEECSSS---CSCEEEEETTEECCCS
T ss_pred             ccCCeEEEEeCCC---CcEEEEecCCceeccc
Confidence            3577899999443   2479999997765533

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=85.20  E-value=0.81  Score=25.56  Aligned_cols=27  Identities=30%  Similarity=0.637  Sum_probs=20.6

Q ss_pred             eEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         60 IMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ..+..|+++.|.|.+.|..  .-.+.|++
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~~~~~W~R   38 (120)
T d1pg7x1          10 ELVKPGASVKISCKASGYSFTGHLLNWVK   38 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceee
Confidence            4566799999999988744  34578986

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=84.98  E-value=0.84  Score=25.54  Aligned_cols=28  Identities=29%  Similarity=0.608  Sum_probs=21.4

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.+.|..  .-.+.|++
T Consensus         9 ~~~~kpG~sv~LsC~~SG~~~s~~~~~W~R   38 (121)
T d1j05b_           9 AELVEPGASVKLSCTASGFNIKDTYMHWVK   38 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             CceECCCCCEEEEEEEecCCCCCCCcceee
Confidence            44577899999999988744  34678976

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=84.93  E-value=0.66  Score=25.40  Aligned_cols=29  Identities=31%  Similarity=0.581  Sum_probs=21.0

Q ss_pred             CceEeecCCeEEEEeeecCCC------CCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGSP------PPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~~------~~~~~W~~   86 (151)
                      ..+.+.+|+++.|.|...+..      ...+.|++
T Consensus         9 ~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYr   43 (113)
T d1q9ra1           9 SSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQ   43 (113)
T ss_dssp             SEEEEETTSCEEEEEEESSCCEETTTTEECEEEEE
T ss_pred             CEEEECCCCCEEEEEEECCCcccCCCCCcceEEEe
Confidence            456777899999999865421      23488997

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=84.93  E-value=0.51  Score=25.94  Aligned_cols=28  Identities=29%  Similarity=0.569  Sum_probs=21.4

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.+.|..  .-.+.|++
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvR   38 (109)
T d2ck0h1           9 GGLVQPRGSLKLSCAASGFTFNTDAMNWVR   38 (109)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CCeECCCCCeEEEEEECCCcccccccccce
Confidence            45677899999999998844  34678876

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.80  E-value=0.84  Score=24.44  Aligned_cols=19  Identities=21%  Similarity=0.443  Sum_probs=16.4

Q ss_pred             CceeEeecCCcEEEEeeec
Q psy16421        108 SQLIGAHEGQQLVLECISE  126 (151)
Q Consensus       108 ~~~~~~~~g~~~~l~C~~~  126 (151)
                      |..+.+.+|+.|.|.|...
T Consensus         7 P~~v~~~~G~~V~l~C~f~   25 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFS   25 (118)
T ss_dssp             CSEEEEETTSCEEECCEEE
T ss_pred             CCEEEEecCCcEEEEEEEe
Confidence            5678899999999999864

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=84.70  E-value=1  Score=25.23  Aligned_cols=28  Identities=29%  Similarity=0.590  Sum_probs=21.7

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.+.|..  .-.+.|++
T Consensus        10 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvR   39 (122)
T d1vgeh1          10 AEVKKPGASVKVSCKASGYSFTSYGLHWVR   39 (122)
T ss_dssp             CEEECTTCCEEEEEEECSSCGGGSEEEEEE
T ss_pred             CcEECCCCCEEEEEEEcCCCccCCCceeeE
Confidence            44677899999999998854  34578886

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=84.43  E-value=0.86  Score=25.24  Aligned_cols=27  Identities=33%  Similarity=0.675  Sum_probs=20.6

Q ss_pred             eEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         60 IMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ..+..|++++|.|.+.|..  .-.+.|++
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~R   38 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVK   38 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeE
Confidence            3566799999999988743  34578886

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=84.37  E-value=0.74  Score=25.74  Aligned_cols=27  Identities=22%  Similarity=0.459  Sum_probs=21.0

Q ss_pred             eEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         60 IMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      -.+..|+++.|.|.+.|..  .-.+.|++
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~y~~~W~R   38 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVYGGSFSDYYWSWIR   38 (120)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEE
T ss_pred             cEECCCCCEEEEEEEccccCccCcceeee
Confidence            4567799999999998854  34578886

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=84.24  E-value=0.66  Score=25.69  Aligned_cols=28  Identities=32%  Similarity=0.628  Sum_probs=21.3

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.+.|..  .-.+.|++
T Consensus         9 ~~~vkpG~sl~LsC~~SG~~~s~~~~~WvR   38 (114)
T d1indh1           9 GDSVKPGGSLKLSCAASGFTLSGETMSWVR   38 (114)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CceECCCCCEEEEEEECccCccCCceeccc
Confidence            34667899999999998854  34577886

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=83.82  E-value=0.78  Score=25.60  Aligned_cols=28  Identities=32%  Similarity=0.653  Sum_probs=21.3

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.+.|..  .-.+.|++
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvR   38 (119)
T d1eapb1           9 TELVKPGASVKISCKASGYISTDHAIHWVK   38 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CceECCCCCEEEEEEEccCcccCCCCccce
Confidence            34566799999999998854  34578886

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.79  E-value=0.86  Score=23.45  Aligned_cols=26  Identities=15%  Similarity=0.353  Sum_probs=18.9

Q ss_pred             ecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421        114 HEGQQLVLECISEAYPKSVNYWTREKGDM  142 (151)
Q Consensus       114 ~~g~~~~l~C~~~g~p~~~~~W~k~~~~~  142 (151)
                      .....|.|.|-.   ....|.|+++|..+
T Consensus        15 ~~dg~V~L~Cn~---~~k~i~W~kdg~~i   40 (81)
T d1sy6a1          15 QEDGSVLLTCDA---EAKNITWFKDGKMI   40 (81)
T ss_dssp             CSSSEEEEEECS---CSSEEEEEETTEEE
T ss_pred             ccCCeEEEEeCC---CCcEEEEecCCeEe
Confidence            357789999942   33489999987644

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=83.66  E-value=1.1  Score=24.97  Aligned_cols=28  Identities=29%  Similarity=0.621  Sum_probs=21.3

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.+.|..  .-.+.|.+
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvR   38 (118)
T d2jelh1           9 PELVRPGVSVKISCKGSGYTFTTYAMHWVK   38 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceecce
Confidence            34567799999999998854  33578876

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.59  E-value=1.1  Score=24.30  Aligned_cols=29  Identities=28%  Similarity=0.492  Sum_probs=21.1

Q ss_pred             CceEeecCCeEEEEeeecC----CCCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASG----SPPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g----~~~~~~~W~~   86 (151)
                      ..+.+..|+++.|.|....    .....+.|++
T Consensus         7 ~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~   39 (119)
T d1neua_           7 REVYGAVGSQVTLHCSFWSSEWVSDDISFTWRY   39 (119)
T ss_dssp             SEEEEETTSCEEECCEEECSSCCCSCCEEEEEE
T ss_pred             CeEEEeeCCCEEEEEEEEecCCCCccEEEEEEE
Confidence            4567788999999998532    2234789986

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=83.57  E-value=1.1  Score=24.95  Aligned_cols=28  Identities=29%  Similarity=0.704  Sum_probs=21.3

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.+.|..  .-.+.|.+
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvR   38 (118)
T d1ct8b1           9 AVLVKPGASVKLSCKTSGFTFSSSYINWLK   38 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTCEEEEEE
T ss_pred             CceECCCCCEEEEEEEccccCCCCCCcccE
Confidence            45667799999999998844  44678875

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=83.49  E-value=0.82  Score=25.41  Aligned_cols=27  Identities=26%  Similarity=0.586  Sum_probs=20.6

Q ss_pred             eEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         60 IMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ..+..|+++.|.|.+.|..  .-.+.|++
T Consensus        10 ~~~kPg~sv~LsC~~SG~s~~~y~~~W~R   38 (117)
T d1iqdb1          10 EVKKPGASVKVSCKVSGYTLTELPVHWVR   38 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEE
Confidence            4566799999999998843  34578886

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.46  E-value=0.4  Score=26.19  Aligned_cols=28  Identities=14%  Similarity=0.417  Sum_probs=20.7

Q ss_pred             ceEeecCCeEEEEeeecC--CCCCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASG--SPPPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g--~~~~~~~W~~   86 (151)
                      ...+.+|++++|.|...+  .....+.|++
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyr   37 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQI   37 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEE
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEE
Confidence            356778999999998653  2345678997

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=83.36  E-value=1.1  Score=24.86  Aligned_cols=28  Identities=32%  Similarity=0.644  Sum_probs=20.9

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.+.|..  .-.+.|++
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~s~~~~~WvR   38 (117)
T d1mfah1           9 TVVARPGASVKMSCKASGYTFTNYWMHWIK   38 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             CceECCCCCEEEEEEEcccCCCCCceEeee
Confidence            44567799999999998743  34567875

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.34  E-value=1  Score=25.02  Aligned_cols=27  Identities=30%  Similarity=0.672  Sum_probs=20.8

Q ss_pred             eEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         60 IMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ..+..|++++|.|.+.|..  .-.+.|++
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~W~R   38 (117)
T d1c5db1          10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVR   38 (117)
T ss_dssp             SEECTTSCEEEEEEECSSCTTTCCEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceEccc
Confidence            4567899999999998854  34578876

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=83.33  E-value=1  Score=25.03  Aligned_cols=28  Identities=29%  Similarity=0.535  Sum_probs=21.2

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.+.|..  .-.+.|++
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~WvR   38 (118)
T d1nlbh1           9 PELKKPGETVKISCKASGYTFTDFSMHWVN   38 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeccc
Confidence            34567799999999998844  34578876

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=83.29  E-value=1.1  Score=25.17  Aligned_cols=28  Identities=25%  Similarity=0.491  Sum_probs=21.1

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.+.|..  .-.+.|++
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~W~R   38 (124)
T d2b1hh1           9 AEVKKSGESLKISCQTSGYSFSDYWIGWVR   38 (124)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCcCccce
Confidence            34567799999999998854  33568876

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.27  E-value=0.48  Score=25.99  Aligned_cols=29  Identities=17%  Similarity=0.422  Sum_probs=22.2

Q ss_pred             CceEeecCCeEEEEeeecCC--CCCeEEEEe
Q psy16421         58 SDIMVREGSNVSMRCAASGS--PPPSIMWRR   86 (151)
Q Consensus        58 ~~~~~~~g~~~~l~C~~~g~--~~~~~~W~~   86 (151)
                      +...+.+|++++|.|...+.  ..-.+.|.+
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~r   33 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQR   33 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEE
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEE
Confidence            34677899999999997653  345678997

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=83.09  E-value=1  Score=25.00  Aligned_cols=28  Identities=32%  Similarity=0.596  Sum_probs=21.1

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.+.|..  .-.+.|.+
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s~~~~~~~WvR   38 (116)
T d1mjuh1           9 AELVKPGASVKLSCKASGYTFTNYWINWVK   38 (116)
T ss_dssp             EEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CcEECCCCCEEEEEEEccCccccCceEeee
Confidence            45667799999999998844  34567875

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=82.93  E-value=1  Score=25.02  Aligned_cols=28  Identities=32%  Similarity=0.583  Sum_probs=21.6

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.+.|..  .-.+.|.+
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvR   38 (117)
T d1jpth1           9 GGLVQPGGSLRLSCAASGFNIKEYYMHWVR   38 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEcce
Confidence            34667799999999998855  44678876

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=82.83  E-value=1.3  Score=25.08  Aligned_cols=28  Identities=32%  Similarity=0.563  Sum_probs=21.2

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.+.|..  .-.+.|++
T Consensus         8 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvR   37 (130)
T d1rhhb1           8 AEVKKPGSSVQVSCKASGGTFSMYGFNWVR   37 (130)
T ss_dssp             CEEECTTCCEEEEEEETTSCCTTCEEEEEE
T ss_pred             CceECCCCCeEEEEEEeCCCccCCCcceEE
Confidence            34567799999999998843  34578876

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=82.71  E-value=1.3  Score=24.93  Aligned_cols=28  Identities=29%  Similarity=0.593  Sum_probs=20.4

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.+.|..  .-.+.|++
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvR   37 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFR   37 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEE
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeee
Confidence            34567799999999998844  44578886

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=82.54  E-value=1.1  Score=24.91  Aligned_cols=27  Identities=30%  Similarity=0.560  Sum_probs=20.7

Q ss_pred             eEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         60 IMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ..+..|+++.|.|.+.|..  .-.+.|++
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvR   38 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVR   38 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTSEEEEEE
T ss_pred             ceECCCCCEEEEEEEeeecCCCCcceece
Confidence            4566799999999998844  34677876

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=82.46  E-value=1  Score=24.97  Aligned_cols=28  Identities=29%  Similarity=0.592  Sum_probs=21.1

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.++|..  .-.+.|++
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvR   38 (117)
T d1jnhb1           9 AELARPGASVKLSCRTSGYSFTTYWMQWVR   38 (117)
T ss_dssp             CEECCTTCCEEEEEEEESSCSSSSEEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeeee
Confidence            34566799999999998854  34578876

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=82.39  E-value=1.1  Score=24.89  Aligned_cols=27  Identities=26%  Similarity=0.501  Sum_probs=20.7

Q ss_pred             eEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         60 IMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ..+..|+++.|.|.+.|..  .-.+.|++
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~y~~~WvR   38 (116)
T d1a2yb_          10 GLVAPSQSLSITCTVSGFSLTGYGVNWVR   38 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEE
T ss_pred             ceECCCCCeEEEEEEcccccCCCCCccce
Confidence            4567799999999998844  34577876

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=82.21  E-value=0.25  Score=28.05  Aligned_cols=17  Identities=24%  Similarity=0.507  Sum_probs=14.5

Q ss_pred             CccccccCCeEEEEEEE
Q psy16421          1 MTEVSREHMGAYLCIAS   17 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~   17 (151)
                      |++++.+|++.|.|-..
T Consensus        84 i~~l~~eDtAvYyCAr~  100 (126)
T d1etzb1          84 ITSVDTSDTATYHCARR  100 (126)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             eecccccccceEEEEEe
Confidence            56889999999999764

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=82.13  E-value=0.91  Score=25.30  Aligned_cols=28  Identities=32%  Similarity=0.612  Sum_probs=21.0

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.+.|..  .-.+.|++
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~W~R   37 (119)
T d1kxvc_           8 GGTVPAGGSLRLSCAASGNTLCTYDMSWYR   37 (119)
T ss_dssp             CEEECTTCCEEEEEEEESCTTCCEEEEEEE
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceeeee
Confidence            34567799999999998854  33567876

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=81.97  E-value=0.99  Score=25.39  Aligned_cols=28  Identities=29%  Similarity=0.607  Sum_probs=20.9

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.+.|..  .-.+.|++
T Consensus         9 ~~l~kPg~sl~LsC~~SG~~~~~y~~~WvR   38 (125)
T d1rihh1           9 NELAKPGASMKMSCRASGYSFTSYWIHWLK   38 (125)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CceECCCCCEEEEEEEccCCCCCCCCcccc
Confidence            34567799999999998744  33577875

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=81.71  E-value=1.1  Score=25.02  Aligned_cols=27  Identities=22%  Similarity=0.518  Sum_probs=20.1

Q ss_pred             eEeecCCeEEEEeeecCCCCC---eEEEEe
Q psy16421         60 IMVREGSNVSMRCAASGSPPP---SIMWRR   86 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g~~~~---~~~W~~   86 (151)
                      ..+..|+++.|.|.+.|....   .+.|.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~s~y~~~WvR   39 (119)
T d1ncwh1          10 GLVKPSQSLSLTCTVTGYSITSDFAWNWIR   39 (119)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEE
T ss_pred             cEECCCCCEEEEEEEccccccCCCccccce
Confidence            456679999999999885432   357865

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=81.67  E-value=1.1  Score=25.40  Aligned_cols=28  Identities=36%  Similarity=0.623  Sum_probs=21.3

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.+.|..  .-.+.|++
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~s~y~~~WvR   38 (130)
T d1rzga1           9 AEVKKPGSSVKVSCKASGGTFSNYAINWVR   38 (130)
T ss_dssp             CEEECTTCCEEEEEECCSSCGGGCCEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceEccc
Confidence            34566799999999998854  34678876

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=81.55  E-value=0.72  Score=26.07  Aligned_cols=27  Identities=33%  Similarity=0.636  Sum_probs=20.8

Q ss_pred             eEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         60 IMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ..+..|+++.|.|.+.|..  .-.+.|++
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~s~y~~~W~R   38 (127)
T d1i3ua_          10 GLVQAGDSLKLSCEASGDSIGTYVIGWFR   38 (127)
T ss_dssp             EECCTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCCCCCceEeee
Confidence            4566799999999998854  34678986

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=81.54  E-value=0.89  Score=25.34  Aligned_cols=26  Identities=38%  Similarity=0.765  Sum_probs=19.9

Q ss_pred             EeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         61 MVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        61 ~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      .+..|+++.|.|.+.|..  .-.+.|++
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyR   38 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMK   38 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEE
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceee
Confidence            566799999999988743  33578986

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=81.48  E-value=1.1  Score=24.99  Aligned_cols=28  Identities=29%  Similarity=0.553  Sum_probs=21.4

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.+.|..  .-.+.|++
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvR   38 (119)
T d1rz7h1           9 AEVKKPGATVKISCKASGYTFSDFYMYWVR   38 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEccc
Confidence            34567799999999998854  34578876

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=81.37  E-value=1.4  Score=24.62  Aligned_cols=27  Identities=33%  Similarity=0.567  Sum_probs=20.7

Q ss_pred             eEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         60 IMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ..+..|+++.|.|.+.|..  .-.+.|.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvR   38 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFR   38 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeecc
Confidence            4567899999999998743  44678876

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=81.32  E-value=0.95  Score=25.43  Aligned_cols=28  Identities=36%  Similarity=0.610  Sum_probs=21.4

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.+.|..  .-.+.|++
T Consensus         8 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvR   37 (124)
T d1zvya1           8 GGSVQAGGSLRLSCAASGSTDSIEYMTWFR   37 (124)
T ss_dssp             CEECCTTCCEEEEEEEESCSTTCCEEEEEE
T ss_pred             CceECCCCCeEEEEEEcCcccccccccccc
Confidence            34566799999999998844  34678886

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.18  E-value=0.78  Score=24.90  Aligned_cols=28  Identities=25%  Similarity=0.362  Sum_probs=20.3

Q ss_pred             ceEeecCCeEEEEeeecCCCC----CeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSPP----PSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~~----~~~~W~~   86 (151)
                      .+.+.+|+++.|.|.....+.    ..+.|++
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~   44 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLI   44 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEE
Confidence            356778999999999754332    3578986

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=81.12  E-value=1.3  Score=24.58  Aligned_cols=27  Identities=30%  Similarity=0.665  Sum_probs=20.8

Q ss_pred             eEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         60 IMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ..+..|+++.|.|.+.|..  .-.+.|++
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvR   38 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVR   38 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEE
T ss_pred             ceECCCCCeEEEEEECCCcccCCCccccc
Confidence            3567799999999998854  44678876

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=81.12  E-value=1.4  Score=24.87  Aligned_cols=28  Identities=32%  Similarity=0.551  Sum_probs=21.2

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.+.|..  .-.+.|++
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvR   38 (127)
T d1n0xh1           9 AEVKKPGASVKVSCQASGYRFSNFVIHWVR   38 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEE
Confidence            34667799999999998854  33568876

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=80.97  E-value=1.1  Score=25.15  Aligned_cols=28  Identities=18%  Similarity=0.481  Sum_probs=21.3

Q ss_pred             ceEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         59 DIMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        59 ~~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      ...+..|+++.|.|.+.|..  .-.+.|.+
T Consensus         8 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvR   37 (126)
T d1lmka1           8 TELMKPGRSLKISCKTTGYIFSNYWIEWVK   37 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCTTTEEEEEEE
T ss_pred             CceECCCCCeEEEEEEccCCCCCCCCccee
Confidence            45667899999999998854  34567875

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=80.97  E-value=1.4  Score=24.59  Aligned_cols=27  Identities=30%  Similarity=0.596  Sum_probs=20.6

Q ss_pred             eEeecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         60 IMVREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      -.+..|+++.|.|.+.|..  .-.+.|++
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~y~~~WvR   38 (120)
T d1dlfh_          10 GLVQPGGSMKLSCATSGFTFSDAWMDWVR   38 (120)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTCEEEEEE
T ss_pred             ceECCCCCeEEEEEECCccCcCCceEeee
Confidence            3566799999999998743  44678876

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=80.94  E-value=0.29  Score=27.98  Aligned_cols=18  Identities=33%  Similarity=0.569  Sum_probs=15.0

Q ss_pred             CccccccCCeEEEEEEEc
Q psy16421          1 MTEVSREHMGAYLCIASN   18 (151)
Q Consensus         1 i~~v~~~d~G~Y~C~~~~   18 (151)
                      |.+++.+|++.|.|-...
T Consensus        84 i~~l~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          84 MTRVSPVDTATYFCAHRR  101 (132)
T ss_dssp             ECSCCGGGCEEEEEEEEC
T ss_pred             cccCCcccceEEEEEEec
Confidence            568899999999997644

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=80.56  E-value=1.2  Score=24.89  Aligned_cols=27  Identities=22%  Similarity=0.466  Sum_probs=19.4

Q ss_pred             eEeecCCeEEEEeeecCCC--C--CeEEEEe
Q psy16421         60 IMVREGSNVSMRCAASGSP--P--PSIMWRR   86 (151)
Q Consensus        60 ~~~~~g~~~~l~C~~~g~~--~--~~~~W~~   86 (151)
                      ..+..|+++.|.|.+.|..  .  -.+.|++
T Consensus        10 ~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~R   40 (123)
T d1r0ah1          10 GIVQPSQPFRLTCTFSGFSLSTSGIGVTWIR   40 (123)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCccCCCCCeeeccc
Confidence            3566799999999987733  2  2457885

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=80.33  E-value=0.75  Score=25.15  Aligned_cols=25  Identities=36%  Similarity=0.711  Sum_probs=18.0

Q ss_pred             eecCCeEEEEeeecCCC--CCeEEEEe
Q psy16421         62 VREGSNVSMRCAASGSP--PPSIMWRR   86 (151)
Q Consensus        62 ~~~g~~~~l~C~~~g~~--~~~~~W~~   86 (151)
                      +..|+++.|.|.+.|..  .-.+.|++
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvR   31 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYR   31 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEE
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEE
Confidence            45799999999998732  44567886

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.28  E-value=1.4  Score=23.60  Aligned_cols=29  Identities=21%  Similarity=0.423  Sum_probs=20.8

Q ss_pred             cCCeEEEEeeecC-CC-CCeEEEEeCCeeeEe
Q psy16421         64 EGSNVSMRCAASG-SP-PPSIMWRREGGEMIT   93 (151)
Q Consensus        64 ~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~   93 (151)
                      ....+.|.|.+.| .| ...+.|.+ +++...
T Consensus        20 ~~~~~~l~Cl~~gF~P~~i~v~W~~-~~~~~~   50 (105)
T d1dn0b2          20 DTSSVAVGCLAQDFLPDSITFSWKY-KNNSDI   50 (105)
T ss_dssp             -CCSEEEEEEEEEEBSSCCEEEEEE-TTSCEE
T ss_pred             CCCceEEEEEEecccCCcEEEEEEE-CCcccc
Confidence            3577999999988 55 46899998 454443