Psyllid ID: psy16438

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
ESVDDAGGGYNECLSELCEELRDNSLLKVLIPTPNSNDENGSNRDKFILNPDPFAAAGSNDKLFFFLGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMPFSTASSSNQFYVHLNPFENDITESNIRQYVVLPTTRYSKSCAFQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMPFSTASSSNQFYVHLNPFENDITESNIRQYVVLVLQFRLHEFDERIHYVRKGLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEVLEEMSNQDRVLFIRFVSGRSRLAKSAREFRGLKFEIQFLDRDCDPDTLFPESSTCFFLLRLPRYTNKDTLKHKLVEAIHLSKAINTDDNILAEYLEGNESPVNSIDNSDVDE
cccccccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHccccccccccccccHHHHHHHHHHHcccccccccccccEEEEcccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHcccccccccHHHccHHHHHHHHHHHccccccccccccEEEEEcccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccccHHHHHHHHcccccccHHHHHHccEEccccccccccEEHHHHHHHcccHHHHHHHcccccccccccccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHccccccccccccccccc
cccccccccccHHHHHHHHHHHccccEEEEEEcccccccccccccEEEcccccccccccccccccccccccccEEEcccEEEEEccccccccccccEEEEEEcHHHHHHHHHHHHHHHccHHHHHHHEEEEEccccccccccccccccEcEEEEEcccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccHHcccEEEEEEEccEEEEEEEccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHccccccHHHHHHcccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccccEccccccccEEEEEEccccccccEEEHHHcEEEccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccc
esvddagggyNECLSELCEELrdnsllkvliptpnsndengsnrdkfilnpdpfaaagsndkLFFFLGILLGIAIRTGHYLNLFLAEpiwtllsgdilslHDLMEIDQNFITVLSNmtqmpgeevnalqmpfstasssnqfyvhlnpfenditesnirqyvvlpttryskscaFQGILLGIAIRTGHYLNLFLAEpiwtllsgdilslHDLMEIDQNFITVLSNmtqmpgeevnalqmpfstasssnqfyvhlnpfenditesnIRQYVVLVLQFRLHEFDERIHYVRKGLyqvipvpllhlfsgaeietlvcstpeisIDVLKQVTFykdemnvttPQIIWFWEVLEEMSNQDRVLFIRFVSGRSRLAKSAREFRGLKFEIQFldrdcdpdtlfpesstcffllrlprytnkdtLKHKLVEAIHlskaintdDNILAEYlegnespvnsidnsdvde
esvddagggyNECLSELCEELRDNSLLKVLIPtpnsndengsnrDKFILNPDPFAAAGSNDKLFFFLGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMPFSTASSSNQFYVHLNPFENDITESNIRQYVVLPTTRYSKSCAFQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMPFSTASSSNQFYVHLNPFENDITESNIRQYVVLVLQFRLHEFDERIHYVRKGLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEVLEEMSNQDRVLFIRFVSGRSRLAKSAREFRGLKFEIQFLDRDCDPDTLFPESSTCFFLLRLPRYTNKDTLKHKLVEAihlskaintDDNILAEYlegnespvnsidnsdvde
ESVDDAGGGYNECLSELCEELRDNSLLKVLIPTPNSNDENGSNRDKFILNPDPFAAAGSNDKlffflgillgiAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMPFSTASSSNQFYVHLNPFENDITESNIRQYVVLPTTRYSKSCAFQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMPFSTASSSNQFYVHLNPFENDITESNIRQYVVLVLQFRLHEFDERIHYVRKGLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEVLEEMSNQDRVLFIRFVSGRSRLAKSAREFRGLKFEIQFLDRDCDPDTLFPESSTCFFLLRLPRYTNKDTLKHKLVEAIHLSKAINTDDNILAEYLEGNESPVNSIDNSDVDE
*********YNECLSELCEELRDNSLLKVLI***************FILNPDPFAAAGSNDKLFFFLGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMT********************NQFYVHLNPFENDITESNIRQYVVLPTTRYSKSCAFQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMT********************NQFYVHLNPFENDITESNIRQYVVLVLQFRLHEFDERIHYVRKGLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEVLEEMSNQDRVLFIRFVSGRSRLAKSAREFRGLKFEIQFLDRDCDPDTLFPESSTCFFLLRLPRYTNKDTLKHKLVEAIHLSKAINTDDNILAEYL*****************
ESVDDAGGGYNECLSELCEELRDNSLLKVLIPTPNSNDENGSNRDKFILNPDPFAAAGSNDKLFFFLGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMPFSTASSSNQFYVHLNPFENDITESNIRQYVVLPTTRYSKSCAFQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMPFSTASSSNQFYVHLNPFENDITESNIRQYVVLVLQFRLHEFDERIHYVRKGLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEVLEEMSNQDRVLFIRFVSGRSRLAKSAREFRGLKFEIQFLDRDCDPDTLFPESSTCFFLLRLPRYTNKDTLKHKLVEAIHLSKAINTDDNILAEY******************
********GYNECLSELCEELRDNSLLKVLIPTPNSNDENGSNRDKFILNPDPFAAAGSNDKLFFFLGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMPFSTASSSNQFYVHLNPFENDITESNIRQYVVLPTTRYSKSCAFQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMPFSTASSSNQFYVHLNPFENDITESNIRQYVVLVLQFRLHEFDERIHYVRKGLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEVLEEMSNQDRVLFIRFVSGRSRLAKSAREFRGLKFEIQFLDRDCDPDTLFPESSTCFFLLRLPRYTNKDTLKHKLVEAIHLSKAINTDDNILAEYLEGNESPV**********
*******GGYNECLSELCEELRDNSLLKVLIPTPNSND****NRDKFILNPDPFAAAGSNDKLFFFLGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMPFSTASSSNQFYVHLNPFENDITESNIRQYVVLPTTRYSKSCAFQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMPFSTASSSNQFYVHLNPFENDITESNIRQYVVLVLQFRLHEFDERIHYVRKGLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEVLEEMSNQDRVLFIRFVSGRSRLAKSAREFRGLKFEIQFLDRDCDPDTLFPESSTCFFLLRLPRYTNKDTLKHKLVEAIHLSKAINTDDNILAEYLEGNE*************
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ESVDDAGGGYNECLSELCEELRDNSLLKVLIPTPNSNDENGSNRDKFILNPDPFAAAGSNDKLFFFLGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMPFSTASSSNQFYVHLNPFENDITESNIRQYVVLPTTRYSKSCAFQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMPFSTASSSNQFYVHLNPFENDITESNIRQYVVLVLQFRLHEFDERIHYVRKGLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEVLEEMSNQDRVLFIRFVSGRSRLAKSAREFRGLKFEIQFLDRDCDPDTLFPESSTCFFLLRLPRYTNKDTLKHKLVEAIHLSKAINTDDNILAEYLEGNESPVNSIDNSDVDE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query458 2.2.26 [Sep-21-2011]
Q4U2R14836 E3 ubiquitin-protein liga yes N/A 0.672 0.063 0.443 7e-68
O957144834 E3 ubiquitin-protein liga yes N/A 0.628 0.059 0.457 6e-67
Q9VR914912 Probable E3 ubiquitin-pro yes N/A 0.609 0.056 0.452 4e-65
Q157514861 Probable E3 ubiquitin-pro no N/A 0.593 0.055 0.373 6e-45
Q5T447861 E3 ubiquitin-protein liga no N/A 0.561 0.298 0.310 1e-26
Q3U487861 E3 ubiquitin-protein liga no N/A 0.561 0.298 0.306 4e-26
F8W2M1904 E3 ubiquitin-protein liga no N/A 0.543 0.275 0.295 5e-24
D3ZBM7909 E3 ubiquitin-protein liga no N/A 0.543 0.273 0.287 5e-22
Q3U0D9909 E3 ubiquitin-protein liga no N/A 0.543 0.273 0.283 1e-21
Q8IYU2909 E3 ubiquitin-protein liga no N/A 0.543 0.273 0.283 2e-21
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function desciption
 Score =  258 bits (659), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 140/316 (44%), Positives = 199/316 (62%), Gaps = 8/316 (2%)

Query: 145  LNPFENDITESNIRQYVVLPTTRYSKSCA---FQGILLGIAIRTGHYLNLFLAEPIWTLL 201
            + P   D + +N   Y++ P TR    C+   F G+LLGIAIRTG  L+L LAEP+W  L
Sbjct: 4505 VTPNGRDESGANRDCYLLNPATRAPVHCSMFRFLGVLLGIAIRTGSPLSLNLAEPVWKQL 4564

Query: 202  SGDILSLHDLMEIDQNFITVLSNM--TQMPGEEVNALQMPFSTASSSNQFYVHLNPFEND 259
            +G  L++ DL E+D++FI  L  +   +   EE  A+ +PF+  S+S Q  + L+     
Sbjct: 4565 AGMSLTIADLSEVDKDFIPGLMYIRDNEATSEEFEAMSLPFTVPSASGQ-DIQLSSKHTH 4623

Query: 260  ITESNIRQYVVLVLQFRLHEFDERIHYVRKGLYQVIPVPLLHLFSGAEIETLVCSTPEIS 319
            IT  N  +YV L + +RLHEFDE++  VR+G+ +V+PVPLL LF+G E+ET+VC +P+I 
Sbjct: 4624 ITLDNRAEYVRLAINYRLHEFDEQVAAVREGMARVVPVPLLSLFTGYELETMVCGSPDIP 4683

Query: 320  IDVLKQVTFYKDEMNVTTPQIIWFWEVLEEMSNQDRVLFIRFVSGRSRLAKSAREFRGLK 379
            + +LK V  YK  +  +   + WFWEV+E  SN +R LF+RFV GR+RL ++  +FRG  
Sbjct: 4684 LHLLKSVATYKG-IEPSASLVQWFWEVMESFSNTERSLFLRFVWGRTRLPRTIADFRGRD 4742

Query: 380  FEIQFLDRDCDPDTLFPESSTCFFLLRLPRYTNKDTLKHKLVEAIHLSKAINTDDNILAE 439
            F IQ LD+   PD   PES TCFFLL+LPRY+ K  L+ KL  AIH  K+I+TDD     
Sbjct: 4743 FVIQVLDKYNPPDHFLPESYTCFFLLKLPRYSCKQVLEEKLKYAIHFCKSIDTDDYARIA 4802

Query: 440  YLEGNESPVNSIDNSD 455
             L G  +  +S ++SD
Sbjct: 4803 -LTGEPAADDSSEDSD 4817
E3 ubiquitin-protein ligase that regulates ubiquitin-dependent retention of repair proteins on damaged chromosomes. Recruited to sites of DNA damage in response to ionizing radiation (IR) and facilitates the assembly of UBE2N and RNF8 promoting DNA damage-induced formation of 'Lys-63'-linked ubiquitin chains. Acts as a mediator of binding specificity between UBE2N and RNF8. Involved in the maintenance of RNF168 levels. E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of XPA which influences the circadian oscillation of DNA excision repair activity.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function description
>sp|Q5T447|HECD3_HUMAN E3 ubiquitin-protein ligase HECTD3 OS=Homo sapiens GN=HECTD3 PE=1 SV=1 Back     alignment and function description
>sp|Q3U487|HECD3_MOUSE E3 ubiquitin-protein ligase HECTD3 OS=Mus musculus GN=Hectd3 PE=1 SV=2 Back     alignment and function description
>sp|F8W2M1|HACE1_DANRE E3 ubiquitin-protein ligase HACE1 OS=Danio rerio GN=hace1 PE=3 SV=2 Back     alignment and function description
>sp|D3ZBM7|HACE1_RAT E3 ubiquitin-protein ligase HACE1 OS=Rattus norvegicus GN=Hace1 PE=2 SV=1 Back     alignment and function description
>sp|Q3U0D9|HACE1_MOUSE E3 ubiquitin-protein ligase HACE1 OS=Mus musculus GN=Hace1 PE=1 SV=1 Back     alignment and function description
>sp|Q8IYU2|HACE1_HUMAN E3 ubiquitin-protein ligase HACE1 OS=Homo sapiens GN=HACE1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query458
390359737 4064 PREDICTED: E3 ubiquitin-protein ligase H 0.679 0.076 0.429 2e-67
60360320 1871 mKIAA0393 protein [Mus musculus] 0.679 0.166 0.438 3e-67
443690304 4817 hypothetical protein CAPTEDRAFT_172844 [ 0.626 0.059 0.458 4e-67
405965978 5345 Putative E3 ubiquitin-protein ligase HER 0.613 0.052 0.454 4e-66
74201803 681 unnamed protein product [Mus musculus] 0.672 0.452 0.443 4e-66
134288898 4836 E3 ubiquitin-protein ligase HERC2 [Mus m 0.672 0.063 0.443 4e-66
74183965 714 unnamed protein product [Mus musculus] 0.672 0.431 0.443 5e-66
27882442 1183 Herc2 protein, partial [Mus musculus] 0.672 0.260 0.443 5e-66
354489070 4836 PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu 0.672 0.063 0.443 5e-66
148689922 4841 hect (homologous to the E6-AP (UBE3A) ca 0.672 0.063 0.443 5e-66
>gi|390359737|ref|XP_003729552.1| PREDICTED: E3 ubiquitin-protein ligase HERC2, partial [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 138/321 (42%), Positives = 202/321 (62%), Gaps = 10/321 (3%)

Query: 145  LNPFENDITESNIRQYVVLPTTR---YSKSCAFQGILLGIAIRTGHYLNLFLAEPIWTLL 201
            L P   D   +N   ++V PT R   +     F GIL+GIAIRTG  L+L LAEP+W  L
Sbjct: 3734 LTPNGRDEAGANRDCFLVKPTARLQSHQSMFKFLGILMGIAIRTGSPLSLSLAEPVWKQL 3793

Query: 202  SGDILSLHDLMEIDQNFITVLSNMTQMP--GEEVNALQMPFSTASSSNQFYVHLNPFEND 259
            +G  L++ D+ E+D++++  L  +  M    E  N + MP+ST S++ Q  V LN     
Sbjct: 3794 AGMPLTVADVTEVDKDYVAGLMCIRDMESDAEAFNQMDMPYSTPSATGQ-DVPLNTKYAR 3852

Query: 260  ITESNIRQYVVLVLQFRLHEFDERIHYVRKGLYQVIPVPLLHLFSGAEIETLVCSTPEIS 319
            IT  N  +YV   L +RL EFD+++ +VR+G+ +VIPVPLL LF+G+E+ET+VC +P+I 
Sbjct: 3853 ITADNRMEYVRAALNYRLSEFDDQVQWVREGMARVIPVPLLSLFTGSELETMVCGSPDIP 3912

Query: 320  IDVLKQVTFYKDEMNVTTPQIIWFWEVLEEMSNQDRVLFIRFVSGRSRLAKSAREFRGLK 379
            +D+LK V  YK  ++ T P + WFWE++E+ +N +R LF+RFV GR+RL ++  +FRG  
Sbjct: 3913 LDLLKSVATYKG-IDATAPLVTWFWEIMEDFTNNERSLFLRFVWGRTRLPRTIADFRGRD 3971

Query: 380  FEIQFLDRDCDPDTLFPESSTCFFLLRLPRYTNKDTLKHKLVEAIHLSKAINTDDN---I 436
            F +Q LD+   PD   PES TCFFLL+LPRY+ ++ L+ KL  AI+  K+I+TDD     
Sbjct: 3972 FVLQVLDKYNPPDHFLPESYTCFFLLKLPRYSCREVLREKLKYAIYFCKSIDTDDYARIA 4031

Query: 437  LAEYLEGNESPVNSIDNSDVD 457
            L     G ES    I+  ++D
Sbjct: 4032 LTGEAAGGESSSEDIEEDELD 4052

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota
>gi|60360320|dbj|BAD90404.1| mKIAA0393 protein [Mus musculus] Back     alignment and taxonomy information
>gi|443690304|gb|ELT92472.1| hypothetical protein CAPTEDRAFT_172844 [Capitella teleta] Back     alignment and taxonomy information
>gi|405965978|gb|EKC31310.1| Putative E3 ubiquitin-protein ligase HERC2 [Crassostrea gigas] Back     alignment and taxonomy information
>gi|74201803|dbj|BAE28504.1| unnamed protein product [Mus musculus] Back     alignment and taxonomy information
>gi|134288898|ref|NP_034548.2| E3 ubiquitin-protein ligase HERC2 [Mus musculus] gi|341941077|sp|Q4U2R1.3|HERC2_MOUSE RecName: Full=E3 ubiquitin-protein ligase HERC2; AltName: Full=HECT domain and RCC1-like domain-containing protein 2 Back     alignment and taxonomy information
>gi|74183965|dbj|BAE37031.1| unnamed protein product [Mus musculus] Back     alignment and taxonomy information
>gi|27882442|gb|AAH44667.1| Herc2 protein, partial [Mus musculus] Back     alignment and taxonomy information
>gi|354489070|ref|XP_003506687.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HERC2-like [Cricetulus griseus] Back     alignment and taxonomy information
>gi|148689922|gb|EDL21869.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2, isoform CRA_b [Mus musculus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query458
UNIPROTKB|I3LJ08502 I3LJ08 "Uncharacterized protei 0.676 0.617 0.442 7.9e-62
UNIPROTKB|D4ACN34779 Herc2 "Protein Herc2" [Rattus 0.679 0.065 0.438 6.3e-61
MGI|MGI:1032344836 Herc2 "hect (homologous to the 0.679 0.064 0.438 6.4e-61
UNIPROTKB|O957144834 HERC2 "E3 ubiquitin-protein li 0.679 0.064 0.442 8.2e-61
UNIPROTKB|G3MX124757 HERC2 "Uncharacterized protein 0.676 0.065 0.445 1.3e-60
UNIPROTKB|E1B7824847 HERC2 "Uncharacterized protein 0.676 0.063 0.445 1.3e-60
RGD|13079893607 Herc2 "HECT and RLD domain con 0.679 0.086 0.437 1.5e-60
UNIPROTKB|F1M5603643 Herc2 "Protein Herc2" [Rattus 0.679 0.085 0.437 1.5e-60
ZFIN|ZDB-GENE-070718-64832 herc2 "hect domain and RLD 2" 0.615 0.058 0.466 3.1e-60
UNIPROTKB|E1BW484841 HERC2 "Uncharacterized protein 0.615 0.058 0.466 5e-60
UNIPROTKB|I3LJ08 I3LJ08 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 142/321 (44%), Positives = 198/321 (61%)

Query:   145 LNPFENDITESNIRQYVVLPTTR---YSKSCAFQGILLGIAIRTGHYLNLFLAEPIWTLL 201
             + P   D + +N   Y+  P  R   ++    F G+LLGIAIRTG  L+L LAEP+W  L
Sbjct:   171 VTPNGRDESGANRDCYLFSPAARAPVHTNMFRFLGVLLGIAIRTGSPLSLNLAEPVWKQL 230

Query:   202 SGDILSLHDLMEIDQNFITVLSNM--TQMPGEEVNALQMPFSTASSSNQFYVHLNPFEND 259
             +G  L++ DL E+D++FI  L  +   +   EE  A+ +PF+  S+S Q  + L+     
Sbjct:   231 AGMSLTIADLSEVDKDFIPGLMYIRDNEATSEEFEAMSLPFTVPSASGQD-IQLSSKYTH 289

Query:   260 ITESNIRQYVVLVLQFRLHEFDERIHYVRKGLYQVIPVPLLHLFSGAEIETLVCSTPEIS 319
             IT  N  +YV L + +RLHEFDE++  VR+G+ +V+PVPLL LF+G E+ET+VC +P+I 
Sbjct:   290 ITLDNRAEYVRLAINYRLHEFDEQVAAVREGMARVVPVPLLSLFTGYELETMVCGSPDIP 349

Query:   320 IDVLKQVTFYKDEMNVTTPQIIWFWEVLEEMSNQDRVLFIRFVSGRSRLAKSAREFRGLK 379
             + +LK V  YK  +  +   I WFWEV+E  SN +R LF+RFV GR+RL ++  +FRG  
Sbjct:   350 LHLLKSVATYKG-VEPSASLIQWFWEVMESFSNTERSLFLRFVWGRTRLPRTIADFRGRD 408

Query:   380 FEIQFLDRDCDPDTLFPESSTCFFLLRLPRYTNKDTLKHKLVEAIHLSKAINTDDNILAE 439
             F IQ LD+   PD   PES TCFFLL+LPRY+ K  L+ KL  AIH  K+I+TDD     
Sbjct:   409 FVIQVLDKYNPPDHFLPESYTCFFLLKLPRYSCKQVLEEKLKYAIHFCKSIDTDDYARIA 468

Query:   440 YLEGNESPVNSID---NSDVD 457
              L G  +  +S D   N DVD
Sbjct:   469 -LTGEPAADDSSDDSENEDVD 488
GO:0005622 "intracellular" evidence=IEA
GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA
UNIPROTKB|D4ACN3 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:103234 Herc2 "hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|O95714 HERC2 "E3 ubiquitin-protein ligase HERC2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3MX12 HERC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1B782 HERC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1307989 Herc2 "HECT and RLD domain containing E3 ubiquitin protein ligase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M560 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070718-6 herc2 "hect domain and RLD 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BW48 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
pfam00632298 pfam00632, HECT, HECT-domain (ubiquitin-transferas 3e-61
cd00078352 cd00078, HECTc, HECT domain; C-terminal catalytic 8e-56
smart00119328 smart00119, HECTc, Domain Homologous to E6-AP Carb 2e-48
COG5021872 COG5021, HUL4, Ubiquitin-protein ligase [Posttrans 7e-30
pfam00632298 pfam00632, HECT, HECT-domain (ubiquitin-transferas 1e-15
cd00078352 cd00078, HECTc, HECT domain; C-terminal catalytic 2e-14
smart00119328 smart00119, HECTc, Domain Homologous to E6-AP Carb 3e-10
COG5021872 COG5021, HUL4, Ubiquitin-protein ligase [Posttrans 2e-04
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase) Back     alignment and domain information 
 Score =  200 bits (512), Expect = 3e-61
 Identities = 96/255 (37%), Positives = 141/255 (55%), Gaps = 11/255 (4%)

Query: 176 GILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNA 235
           G L+G AI  G  L+L      W  L G  ++L DL E+D      L ++ ++ G+    
Sbjct: 45  GALIGKAIYNGILLDLPFPPAFWKKLLGKPITLEDLEEVDPELYRSLKSLLELDGD-EEE 103

Query: 236 LQMPFSTASSSNQFYVHLNPFENDI--TESNIRQYVVLVLQFRLHE-FDERIHYVRKGLY 292
           L + F T S   +  + L P  ++I  T  N  +YV L + +RL+E   +++   R+G Y
Sbjct: 104 LCLTF-TVSGEGEGTIELIPNGSNIPVTNENKEEYVNLYVDYRLNESIKKQLEAFREGFY 162

Query: 293 QVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEVLEEMSN 352
            VIP  LL LF+  E+E L+C +PEI ++ LK+ T Y    +  +P I WFWEVLEE + 
Sbjct: 163 SVIPKELLSLFTPEELELLICGSPEIDVEDLKKNTEYDGGYSKNSPTIKWFWEVLEEFTQ 222

Query: 353 QDRVLFIRFVSGRSRLAKSAREFRGLKFEIQFLDRDCDPDTLFPESSTCFFLLRLPRYTN 412
           ++R  F++FV+G SRL      F+ LK  IQ  D   D D L P + TCF  L+LP Y++
Sbjct: 223 EERRKFLKFVTGSSRL--PLGGFKKLKITIQRKD---DDDRL-PTAHTCFNRLKLPPYSS 276

Query: 413 KDTLKHKLVEAIHLS 427
           K+ LK KL+ AI   
Sbjct: 277 KEILKEKLLIAIEEG 291

The name HECT comes from Homologous to the E6-AP Carboxyl Terminus. Length = 298
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase) Back     alignment and domain information
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 458
smart00119336 HECTc Domain Homologous to E6-AP Carboxyl Terminus 100.0
cd00078352 HECTc HECT domain; C-terminal catalytic domain of 100.0
COG5021872 HUL4 Ubiquitin-protein ligase [Posttranslational m 100.0
KOG0942|consensus1001 100.0
KOG0941|consensus850 100.0
KOG0939|consensus720 100.0
PF00632317 HECT: HECT-domain (ubiquitin-transferase); InterPr 100.0
KOG0170|consensus621 100.0
KOG4427|consensus1096 100.0
KOG0940|consensus358 100.0
KOG0943|consensus3015 100.0
COG5021872 HUL4 Ubiquitin-protein ligase [Posttranslational m 99.2
KOG0941|consensus850 99.09
KOG0939|consensus720 99.05
cd00078352 HECTc HECT domain; C-terminal catalytic domain of 98.95
smart00119336 HECTc Domain Homologous to E6-AP Carboxyl Terminus 98.94
PF00632317 HECT: HECT-domain (ubiquitin-transferase); InterPr 98.79
KOG0170|consensus621 98.43
KOG4427|consensus1096 98.27
KOG0940|consensus358 97.87
KOG0942|consensus1001 97.16
KOG0943|consensus3015 97.14
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information 
Probab=100.00  E-value=2.3e-76  Score=588.60  Aligned_cols=310  Identities=34%  Similarity=0.548  Sum_probs=274.6

Q ss_pred             CCCCCCCcchHHHHHHHHHHHhcCCCCcceeeCCCCCCCCCCCcceEEECCCCCCCCCchhhHHHHHHHHHHHHHhcCcc
Q psy16438          1 ESVDDAGGGYNECLSELCEELRDNSLLKVLIPTPNSNDENGSNRDKFILNPDPFAAAGSNDKLFFFLGILLGIAIRTGHY   80 (458)
Q Consensus         1 E~~~D~GG~~RE~~~~l~~el~~~p~~~lf~~~~n~~~~~g~~~~~~~~np~~~~~~~~~~~~f~f~G~llg~al~~~~~   80 (458)
                      |+|+|+|||+||||+++|+||+ +|+.+||++++|+.        +++|||.+...++.|+++|+++|+++|+||+++.+
T Consensus        19 E~g~d~gG~~rEf~~~l~~el~-~~~~~lf~~~~~~~--------~~~~~p~~~~~~~~~l~~f~~~G~lig~al~~~~~   89 (336)
T smart00119       19 EEGLDGGGVTREFFFLLSKELF-NPDYGLFRYSPNDY--------LLYPNPRAFFANPEHLAYFRFIGRVLGKALYDNRL   89 (336)
T ss_pred             CCCccCCchHHHHHHHHHHHHh-CcccCCceEcCCCC--------eEEeCCCccccchHHHHHHHHHHHHHHHHHHcCCe
Confidence            8899999999999999999999 99999999999875        48999975344577899999999999999999999


Q ss_pred             ccccccHHHHHHHcCCCCCccchhhhchhhHHHhhhcc-cCccccccccCCCccccccCCceEEecCCCcccccccchhh
Q psy16438         81 LNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMT-QMPGEEVNALQMPFSTASSSNQFYVHLNPFENDITESNIRQ  159 (458)
Q Consensus        81 l~l~~~~~f~k~L~g~~~t~~DL~~~D~~~~~~l~~l~-~~~~~~~~~l~l~F~~~~~s~~~~~~l~p~~~~v~~~n~~~  159 (458)
                      ++++||+.|||.|+|.+++++||.++|+++++++++|+ +.+.                                     
T Consensus        90 ~~l~f~~~f~k~L~~~~~tl~Dl~~~D~~~~~sl~~l~~~~~~-------------------------------------  132 (336)
T smart00119       90 LDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLKWLLLNNDT-------------------------------------  132 (336)
T ss_pred             eCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHHhCCC-------------------------------------
Confidence            99999999999999999999999999999988888773 2210                                     


Q ss_pred             hcccCcccccccchhhhhhhhhhhhcCccccccccHHHHHhhcCCCCCccchhhhhHHHHHHHHHhhcCCcccccccccc
Q psy16438        160 YVVLPTTRYSKSCAFQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMP  239 (458)
Q Consensus       160 yi~~p~~~~~~~~~~~G~lig~ai~~~~~l~l~~~~~~~k~llg~~~~~~Dl~~~d~~~~~sl~~l~~~~~~~~~~l~l~  239 (458)
                                                                                               .+.++++
T Consensus       133 -------------------------------------------------------------------------~~~~~l~  139 (336)
T smart00119      133 -------------------------------------------------------------------------SEELDLT  139 (336)
T ss_pred             -------------------------------------------------------------------------cccccce
Confidence                                                                                     0123455


Q ss_pred             eEeec---CCCeeEEecCCC--CCCCChhhHHHHHHHHHHhHHHH-HHHHHHHHhcccccccccccccCCCHHHHhHhhc
Q psy16438        240 FSTAS---SSNQFYVHLNPF--ENDITESNIRQYVVLVLQFRLHE-FDERIHYVRKGLYQVIPVPLLHLFSGAEIETLVC  313 (458)
Q Consensus       240 F~~~~---~~~~~~v~l~~~--~~~Vt~~N~~eyv~~~~~~~l~~-~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~lic  313 (458)
                      |++..   .++..+++|+++  ++.||.+|+++||+++++|++.+ ++.|++|||+||++|+|.+++++|+|+||++++|
T Consensus       140 F~~~~~~~~g~~~~~eL~~~G~~~~Vt~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~lic  219 (336)
T smart00119      140 FSIVLTSEFGQVKVVELKPGGSNIPVTEENKKEYVHLVIEYRLNKGIEKQLEAFREGFSEVIPENLLRLFTPEELELLIC  219 (336)
T ss_pred             EEEEeeecCCCcceEecCCCCCCCcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCHHHhhCCCHHHHHHHhC
Confidence            54321   123345777765  78899999999999999999965 7999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHccCCCCCCCCCHHHHHHHHHHHhCCHHHHhhhceeccCCCCCCCCcccccCCceEEEEecCCCCCCC
Q psy16438        314 STPEISIDVLKQVTFYKDEMNVTTPQIIWFWEVLEEMSNQDRVLFIRFVSGRSRLAKSAREFRGLKFEIQFLDRDCDPDT  393 (458)
Q Consensus       314 G~~~i~~~~l~~~~~y~~~~~~~~~~i~~fw~vl~~~s~e~r~~fL~FvTG~~rlP~~~~g~~~l~~~i~~~~~~~~~~~  393 (458)
                      |.++||+++|++++.|.++|++++++|+|||+||++||+++|++||+|+||++|+|++  |+++++++|++... +.+++
T Consensus       220 G~~~i~~~~l~~~~~~~~g~~~~~~~i~~Fw~vl~~~s~ee~~~fL~F~TG~~rlP~~--G~~~l~~~~~i~~~-~~~~~  296 (336)
T smart00119      220 GSPEIDVDDLKSNTEYKGGYSENSQTIKWFWEVVESFTNEERRKLLQFVTGSSRLPVG--GFAALSPKFTIRKA-GSDDD  296 (336)
T ss_pred             CCCCCCHHHHhhheEEcCCCCCCCHHHHHHHHHHHHCCHHHHHHhheeccCCCCCCCC--chhhcCCceEEEEC-CCCCC
Confidence            9999999999999999988899999999999999999999999999999999999987  89888777777654 33688


Q ss_pred             CCceecccCCeeecCCCCCHHHHHHHHHHHHHhCccccC
Q psy16438        394 LFPESSTCFFLLRLPRYTNKDTLKHKLVEAIHLSKAINT  432 (458)
Q Consensus       394 ~LP~a~TCf~~L~LP~Yss~e~l~~kL~~AI~~~~~f~~  432 (458)
                      +||+||||||+|+||.|+|+|+||+||++||++|+||+.
T Consensus       297 ~LP~a~TCfn~L~LP~Yss~e~l~~kL~~AI~~~~gF~l  335 (336)
T smart00119      297 RLPTAHTCFNRLKLPPYSSKEILREKLLLAINEGKGFGL  335 (336)
T ss_pred             CCCccccccCcCcCCCCCCHHHHHHHHHHHHHcCCCCCC
Confidence            999999999999999999999999999999999999974

E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0942|consensus Back     alignment and domain information
>KOG0941|consensus Back     alignment and domain information
>KOG0939|consensus Back     alignment and domain information
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] Back     alignment and domain information
>KOG0170|consensus Back     alignment and domain information
>KOG4427|consensus Back     alignment and domain information
>KOG0940|consensus Back     alignment and domain information
>KOG0943|consensus Back     alignment and domain information
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941|consensus Back     alignment and domain information
>KOG0939|consensus Back     alignment and domain information
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] Back     alignment and domain information
>KOG0170|consensus Back     alignment and domain information
>KOG4427|consensus Back     alignment and domain information
>KOG0940|consensus Back     alignment and domain information
>KOG0942|consensus Back     alignment and domain information
>KOG0943|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
3tug_A398 Crystal Structure Of The Hect Domain Of Itch E3 Ubi 1e-20
3jvz_C385 E2~ubiquitin-Hect Length = 385 2e-20
3jw0_C385 E2~ubiquitin-Hect Length = 385 3e-20
1nd7_A374 Conformational Flexibility Underlies Ubiquitin Liga 1e-19
2xbb_A386 Nedd4 Hect:ub Complex Length = 386 2e-19
2oni_A392 Catalytic Domain Of The Human Nedd4-Like E3 Ligase 2e-19
3g1n_A388 Catalytic Domain Of The Human E3 Ubiquitin-Protein 3e-19
3h1d_A405 Structure Of The Huwe1 Hect Domain Length = 405 3e-19
3olm_A429 Structure And Function Of A Ubiquitin Binding Site 3e-17
1c4z_A358 Structure Of E6ap: Insights Into Ubiquitination Pat 2e-16
1zvd_A380 Regulation Of Smurf2 Ubiquitin Ligase Activity By A 6e-14
3pt3_A118 Crystal Structure Of The C-Terminal Lobe Of The Hum 4e-05
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin Ligase Length = 398 Back     alignment and structure 
Iteration: 1

 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 127/270 (47%), Gaps = 8/270 (2%)
Query: 170 KSCAFQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMP 229
           K   F G  + +A+  G +++   + P +  +    + L DL  ID  F   L  + +  
Sbjct: 131 KYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKDLESIDPEFYNSLIWVKENN 190
Query: 230 GEEVNALQMPFSTASSS-NQFYVH-LNPFENDI--TESNIRQYVVLVLQFRLHE-FDERI 284
            EE + L+M FS       +   H L P   +I  TE N  +Y+ +V ++RL    +E+ 
Sbjct: 191 IEECD-LEMYFSVDKEILGEIKSHDLKPNGGNILVTEENKEEYIRMVAEWRLSRGVEEQT 249
Query: 285 HYVRKGLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFW 344
               +G  +++P   L  F   E+E L+C   EI ++  ++   Y+     T+ QI+WFW
Sbjct: 250 QAFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQRHAIYR-RYARTSKQIMWFW 308
Query: 345 EVLEEMSNQDRVLFIRFVSGRSRLAKSA-REFRGLKFEIQFLDRDCDPDTLFPESSTCFF 403
           + ++E+ N+ R+  ++FV+G  RL      +  G     +F       +   P S TCF 
Sbjct: 309 QFVKEIDNEKRMRLLQFVTGTCRLPVGGFADLMGSNGPQKFCIEKVGKENWLPRSHTCFN 368
Query: 404 LLRLPRYTNKDTLKHKLVEAIHLSKAINTD 433
            L LP Y + + LK KL+ AI  ++    +
Sbjct: 369 RLDLPPYKSYEQLKEKLLFAIEETEGFGQE 398
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation Mediated By The Wwp1 Hect Domain E3 Ligase Length = 374 Back     alignment and structure
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex Length = 386 Back     alignment and structure
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase Length = 392 Back     alignment and structure
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase Huwe1 Length = 388 Back     alignment and structure
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain Length = 405 Back     alignment and structure
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 429 Back     alignment and structure
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 358 Back     alignment and structure
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The E2 To The Hect Domain Length = 380 Back     alignment and structure
>pdb|3PT3|A Chain A, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5 Hect Domain Length = 118 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 6e-45
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 4e-05
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 1e-44
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 6e-06
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 1e-44
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 2e-05
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 2e-43
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 2e-05
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 2e-43
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 1e-05
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 1e-42
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 9e-05
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 3e-32
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 Back     alignment and structure
 Score =  160 bits (407), Expect = 6e-45
 Identities = 74/303 (24%), Positives = 140/303 (46%), Gaps = 30/303 (9%)

Query: 132 FSTASSSNQFYVHLNPFENDITESNIRQYVVLPTTRYSKSCAFQGILLGIAIRTGHYLNL 191
           F  +++ N     +NP      E ++  +             F G + G+A+  G  L+ 
Sbjct: 108 FEYSATDNYTL-QINPNSGLCNEDHLSYF------------TFIGRVAGLAVFHGKLLDG 154

Query: 192 FLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMPFSTASSSN-QFY 250
           F   P + ++ G  ++L+D+  +D  +   L  + +    E   L + F     +  Q Y
Sbjct: 155 FFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILENDPTE---LDLMFCIDEENFGQTY 211

Query: 251 VH-LNPFENDI--TESNIRQYVVLVLQFRLHE-FDERIHYVRKGLYQVIPVPLLHLFSGA 306
              L P  ++I  T  N R+Y+ LV+Q+R      ++++   +G  +++P+ L+ +F   
Sbjct: 212 QVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDEN 271

Query: 307 EIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEVLEEMSNQDRVLFIRFVSGRS 366
           E+E L+C   ++ ++  +Q + YK+      P I WFW+ +  M  + R+  ++FV+G S
Sbjct: 272 ELELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTS 331

Query: 367 R-----LAKSAREFRGLKFEIQFLDRDCDPDTLFPESSTCFFLLRLPRYTNKDTLKHKLV 421
           R      A+         F I+   +   P+ L P + TCF  L LP Y   + L+ KL+
Sbjct: 332 RVPMNGFAELYGSNGPQLFTIE---QWGSPEKL-PRAHTCFNRLDLPPYETFEDLREKLL 387

Query: 422 EAI 424
            A+
Sbjct: 388 MAV 390
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 Back     alignment and structure
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 Back     alignment and structure
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Length = 118 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query458
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 100.0
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 100.0
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 100.0
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 100.0
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 100.0
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 100.0
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 100.0
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 99.41
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 99.37
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 99.18
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 99.16
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 99.1
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 99.1
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=5e-79  Score=614.34  Aligned_cols=308  Identities=25%  Similarity=0.441  Sum_probs=266.2

Q ss_pred             CCCCCCCcchHHHHHHHHHHHhcCCCCcceeeCCCCCCCCCCCcceEEECCCCCCCCCchhhHHHHHHHHHHHHHhcCcc
Q psy16438          1 ESVDDAGGGYNECLSELCEELRDNSLLKVLIPTPNSNDENGSNRDKFILNPDPFAAAGSNDKLFFFLGILLGIAIRTGHY   80 (458)
Q Consensus         1 E~~~D~GG~~RE~~~~l~~el~~~p~~~lf~~~~n~~~~~g~~~~~~~~np~~~~~~~~~~~~f~f~G~llg~al~~~~~   80 (458)
                      |+|+|+|||+||||+++++|++ +|.+|||.++++..       .++.|||.+ ...++|+++|+|+|+++|+||+++.+
T Consensus        61 E~G~D~GG~~rEff~ll~~el~-~p~~gLF~~~~~~~-------~~~~~np~s-~~~~~~l~~f~flG~l~g~al~~~~~  131 (380)
T 1zvd_A           61 EEGLDYGGVAREWLYLLSHEML-NPYYGLFQYSRDDI-------YTLQINPDS-AVNPEHLSYFHFVGRIMGMAVFHGHY  131 (380)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHT-SGGGSSEEEETTEE-------EEEEECTTG-GGSTTHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CcCcCCCccHHHHHHHHHHHHc-CCcCCCeeccCCCC-------eeeccCchh-hcChHHHHHHHHhHHHHHHHHhCCce
Confidence            8999999999999999999999 99999999876432       356789974 44678999999999999999999999


Q ss_pred             ccccccHHHHHHHcCCCCCccchhhhchhhHHHhhhcccCccccccccCCCccccccCCceEEecCCCcccccccchhhh
Q psy16438         81 LNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMPFSTASSSNQFYVHLNPFENDITESNIRQY  160 (458)
Q Consensus        81 l~l~~~~~f~k~L~g~~~t~~DL~~~D~~~~~~l~~l~~~~~~~~~~l~l~F~~~~~s~~~~~~l~p~~~~v~~~n~~~y  160 (458)
                      ++++||++|||+|+|.+++++||.++||+++++|.+|.+.+.+  +.++                               
T Consensus       132 ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~ll~~d~~--~~l~-------------------------------  178 (380)
T 1zvd_A          132 IDGGFTLPFYKQLLGKSITLDDMELVDPDLHNSLVWILENDIT--GVLD-------------------------------  178 (380)
T ss_dssp             CCCCCCHHHHHHHTTCCCCSTTHHHHCHHHHHHHHHHHHSCCT--TTSC-------------------------------
T ss_pred             eCCcCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhCCcc--cccc-------------------------------
Confidence            9999999999999999999999999999999988888654311  1234                               


Q ss_pred             cccCcccccccchhhhhhhhhhhhcCccccccccHHHHHhhcCCCCCccchhhhhHHHHHHHHHhhcCCcccccccccce
Q psy16438        161 VVLPTTRYSKSCAFQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMPF  240 (458)
Q Consensus       161 i~~p~~~~~~~~~~~G~lig~ai~~~~~l~l~~~~~~~k~llg~~~~~~Dl~~~d~~~~~sl~~l~~~~~~~~~~l~l~F  240 (458)
                                                                                                   ++|
T Consensus       179 -----------------------------------------------------------------------------ltF  181 (380)
T 1zvd_A          179 -----------------------------------------------------------------------------HTF  181 (380)
T ss_dssp             -----------------------------------------------------------------------------CCS
T ss_pred             -----------------------------------------------------------------------------cee
Confidence                                                                                         444


Q ss_pred             EeecC--CCeeEEecCCC--CCCCChhhHHHHHHHHHHhHHHH-HHHHHHHHhcccccccccccccCCCHHHHhHhhccC
Q psy16438        241 STASS--SNQFYVHLNPF--ENDITESNIRQYVVLVLQFRLHE-FDERIHYVRKGLYQVIPVPLLHLFSGAEIETLVCST  315 (458)
Q Consensus       241 ~~~~~--~~~~~v~l~~~--~~~Vt~~N~~eyv~~~~~~~l~~-~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~  315 (458)
                      +++.+  +...+++|+|+  +++||.+|+++||+++++|++.+ ++.|++||++||++|+|.++|++|+|+||+.++||.
T Consensus       182 ~~~~~~~g~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~  261 (380)
T 1zvd_A          182 CVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGL  261 (380)
T ss_dssp             EEEEEETTEEEEEESSTTCCCCCCTTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCB
T ss_pred             EEeeecCCcEeEEecCCCCCCCccccccHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHhHHHHHhCCCHHHHHHhhCCC
Confidence            44322  22345788775  78999999999999999999986 699999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHccCCCCCCCCCHHHHHHHHHHHhCCHHHHhhhceeccCCCCCCCCcccccCCc-------eEEEEecCC
Q psy16438        316 PEISIDVLKQVTFYKDEMNVTTPQIIWFWEVLEEMSNQDRVLFIRFVSGRSRLAKSAREFRGLK-------FEIQFLDRD  388 (458)
Q Consensus       316 ~~i~~~~l~~~~~y~~~~~~~~~~i~~fw~vl~~~s~e~r~~fL~FvTG~~rlP~~~~g~~~l~-------~~i~~~~~~  388 (458)
                      ++||+++|+++|.|+|+ ++++++|+|||+||++||++||++||+|||||+|+|++  ||+++.       |+|+..   
T Consensus       262 ~~id~~dl~~~t~y~gy-~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~--Gf~~L~~~~gp~~f~I~~~---  335 (380)
T 1zvd_A          262 GKIDVNDWKVNTRLKHC-TPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQ--GFKALQGAAGPRLFTIHQI---  335 (380)
T ss_dssp             SSCCHHHHHHTEEEESS-CTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSSBCTT--CGGGCEETTEECCEEEEEC---
T ss_pred             CCCChhhhhhccEecCC-CCCcchhhhHHHHHHhCCHHHHHHHHHHHhCCCCCCCc--chhhccccCCCCceEEEec---
Confidence            99999999999999965 99999999999999999999999999999999999997  888873       666642   


Q ss_pred             CCCCCCCceecccCCeeecCCCCCHHHHHHHHHHHHHhCccccCc
Q psy16438        389 CDPDTLFPESSTCFFLLRLPRYTNKDTLKHKLVEAIHLSKAINTD  433 (458)
Q Consensus       389 ~~~~~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~AI~~~~~f~~d  433 (458)
                      +.++++||+||||||+|+||.|+|+|+||+||++||++|+||+.+
T Consensus       336 ~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~GF~l~  380 (380)
T 1zvd_A          336 DACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCGFAVE  380 (380)
T ss_dssp             CCCTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHHCC-------
T ss_pred             CCCCCCCCEEecCcCEEECCCCCCHHHHHHHHHHHHHhCCCcCcC
Confidence            346789999999999999999999999999999999999999863
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Back     alignment and structure
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Back     alignment and structure
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Back     alignment and structure
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Back     alignment and structure
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 458
d1c4za_350 d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) 1e-44
d1c4za_350 d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) 3e-11
d1nd7a_374 d.148.1.1 (A:) WW domain-containing protein 1, WWP 1e-42
d1nd7a_374 d.148.1.1 (A:) WW domain-containing protein 1, WWP 9e-12
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: Ubiquitin-protein ligase E3a (E6ap)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  157 bits (398), Expect = 1e-44
 Identities = 64/261 (24%), Positives = 118/261 (45%), Gaps = 12/261 (4%)

Query: 174 FQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEV 233
             GI+LG+AI     L++     ++  L G   +  DL +        L ++ +  G   
Sbjct: 95  LIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVE 154

Query: 234 NALQMPFSTASSS---NQFYVHLNPFENDI--TESNIRQYVVLVLQFRLHE-FDERIHYV 287
           + + + F  + +    N     L    + I  T  N +++V L   + L++  +++    
Sbjct: 155 DDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAF 214

Query: 288 RKGLYQVIP-VPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEV 346
           R+G + V    PL +LF   EIE L+C +  +    L++ T Y       +  I  FWE+
Sbjct: 215 RRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEI 274

Query: 347 LEEMSNQDRVLFIRFVSGRSRLAKSAREFRGLKFEIQFLDRDCDPDTLFPESSTCFFLLR 406
           +   +++ + LF++F +G  R          LK  I    ++       P S TCF +L 
Sbjct: 275 VHSFTDEQKRLFLQFTTGTDRA--PVGGLGKLKMIIA---KNGPDTERLPTSHTCFNVLL 329

Query: 407 LPRYTNKDTLKHKLVEAIHLS 427
           LP Y++K+ LK +L++AI  +
Sbjct: 330 LPEYSSKEKLKERLLKAITYA 350
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 Back     information, alignment and structure
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 Back     information, alignment and structure
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query458
d1nd7a_374 WW domain-containing protein 1, WWP1 {Human (Homo 100.0
d1c4za_350 Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s 100.0
d1c4za_350 Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s 99.17
d1nd7a_374 WW domain-containing protein 1, WWP1 {Human (Homo 98.91
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-72  Score=566.92  Aligned_cols=305  Identities=27%  Similarity=0.435  Sum_probs=266.7

Q ss_pred             CCCCCCCcchHHHHHHHHHHHhcCCCCcceeeCCCCCCCCCCCcceEEECCCCCCCCCchhhHHHHHHHHHHHHHhcCcc
Q psy16438          1 ESVDDAGGGYNECLSELCEELRDNSLLKVLIPTPNSNDENGSNRDKFILNPDPFAAAGSNDKLFFFLGILLGIAIRTGHY   80 (458)
Q Consensus         1 E~~~D~GG~~RE~~~~l~~el~~~p~~~lf~~~~n~~~~~g~~~~~~~~np~~~~~~~~~~~~f~f~G~llg~al~~~~~   80 (458)
                      |+|+|+|||+||||++|++||+ +|.+++|+.++++       +.+++|||.+ ...+.++++|+|+|+++|+||+++.+
T Consensus        60 E~g~D~GG~~rEff~~l~~el~-~p~~~lf~~~~~~-------~~~~~~~p~~-~~~~~~~~~f~~lG~lig~al~~~~~  130 (374)
T d1nd7a_          60 EEGLDYGGLAREWFFLLSHEVL-NPMYCLFEYAGKN-------NYCLQINPAS-TINPDHLSYFCFIGRFIAMALFHGKF  130 (374)
T ss_dssp             TCCCCCTHHHHHHHHHHHHHHT-CGGGSSEEESSSS-------SCCEEECGGG-GGSTTHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCccCCCccHHHHHHHHHHHHc-CCccCCeeecCCC-------CcccccCCcc-ccChhHHHHHHHhHHHHHHHHHcCcc
Confidence            8999999999999999999999 9999999988754       3478999974 55678999999999999999999999


Q ss_pred             ccccccHHHHHHHcCCCCCccchhhhchhhHHHhhhcccCccccccccCCCccccccCCceEEecCCCcccccccchhhh
Q psy16438         81 LNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMPFSTASSSNQFYVHLNPFENDITESNIRQY  160 (458)
Q Consensus        81 l~l~~~~~f~k~L~g~~~t~~DL~~~D~~~~~~l~~l~~~~~~~~~~l~l~F~~~~~s~~~~~~l~p~~~~v~~~n~~~y  160 (458)
                      ++++||+.|||+|+|.+++++||.++|+++++++.++.+.+.++. .++++|+                           
T Consensus       131 ~~~~f~~~f~k~Llg~~~t~~DL~~iD~~~~~sl~~l~~~~~e~~-~l~l~f~---------------------------  182 (374)
T d1nd7a_         131 IDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEEC-GLEMYFS---------------------------  182 (374)
T ss_dssp             CCCCCCHHHHHHHTTCCCCHHHHHTTCHHHHHHHHHHHSSCSCSS-CCCCBSE---------------------------
T ss_pred             cCCCccHHHHHHhcCCCCCHHHHHHhCHHHHHhHHHHHhcccccc-ccceeEE---------------------------
Confidence            999999999999999999999999999999999988876542221 2333343                           


Q ss_pred             cccCcccccccchhhhhhhhhhhhcCccccccccHHHHHhhcCCCCCccchhhhhHHHHHHHHHhhcCCcccccccccce
Q psy16438        161 VVLPTTRYSKSCAFQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMPF  240 (458)
Q Consensus       161 i~~p~~~~~~~~~~~G~lig~ai~~~~~l~l~~~~~~~k~llg~~~~~~Dl~~~d~~~~~sl~~l~~~~~~~~~~l~l~F  240 (458)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (374)
T d1nd7a_         183 --------------------------------------------------------------------------------  182 (374)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeecC--CCeeEEecCCC--CCCCChhhHHHHHHHHHHhHHHH-HHHHHHHHhcccccccccccccCCCHHHHhHhhccC
Q psy16438        241 STASS--SNQFYVHLNPF--ENDITESNIRQYVVLVLQFRLHE-FDERIHYVRKGLYQVIPVPLLHLFSGAEIETLVCST  315 (458)
Q Consensus       241 ~~~~~--~~~~~v~l~~~--~~~Vt~~N~~eyv~~~~~~~l~~-~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~  315 (458)
                       ++.+  +...+++|+++  ++.||.+|+++||+++++|++.+ ++.|++|||+||++|+|..++++|+|+||+.++||.
T Consensus       183 -~~~~~~~~~~~~eL~~~G~~~~VT~~N~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~  261 (374)
T d1nd7a_         183 -VDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGM  261 (374)
T ss_dssp             -ECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCC
T ss_pred             -EEeecCCCcceeecCCCCCcccchHHHHHHHHHHHHHHHHhccHHHHHHHHHHhHHHhCCHHHHhhCCHHHHHHhhCCC
Confidence             2221  11223677765  78999999999999999999987 699999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHccCCCCCCCCCHHHHHHHHHHHhCCHHHHhhhceeccCCCCCCCCcccccCCc-----eEEEEecCCCC
Q psy16438        316 PEISIDVLKQVTFYKDEMNVTTPQIIWFWEVLEEMSNQDRVLFIRFVSGRSRLAKSAREFRGLK-----FEIQFLDRDCD  390 (458)
Q Consensus       316 ~~i~~~~l~~~~~y~~~~~~~~~~i~~fw~vl~~~s~e~r~~fL~FvTG~~rlP~~~~g~~~l~-----~~i~~~~~~~~  390 (458)
                      +++|+++|++++.|.|+ +.+++.|+|||+||++||++||++||+||||++|+|++  ||+++.     .++++. + ..
T Consensus       262 ~~id~~~l~~~~~y~gy-~~~s~~i~~fw~vl~~~t~ee~~~fL~FvTGs~rlP~~--G~~~l~~~~~~~~~~i~-~-~~  336 (374)
T d1nd7a_         262 QEVDLADWQRNTVYRHY-TRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLG--GFAELMGSNGPQKFCIE-K-VG  336 (374)
T ss_dssp             CCCCHHHHHHTEEEESC-CTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTT--CGGGCEETTEECCEEEE-C-CS
T ss_pred             CCCCHHHHhhheeeccC-CCCCHHHHHHHHHHHhcCHHHHHHhheeecCCCCCCCc--chhhhcccCCCCceeec-c-CC
Confidence            99999999999999865 99999999999999999999999999999999999997  887662     234433 2 33


Q ss_pred             CCCCCceecccCCeeecCCCCCHHHHHHHHHHHHHhCc
Q psy16438        391 PDTLFPESSTCFFLLRLPRYTNKDTLKHKLVEAIHLSK  428 (458)
Q Consensus       391 ~~~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~AI~~~~  428 (458)
                      ++++||+||||||+|+||.|+|+|+||+||++||+||+
T Consensus       337 ~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~e  374 (374)
T d1nd7a_         337 KDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE  374 (374)
T ss_dssp             CTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred             CCCCCCchhhhhcEeeCCCCCCHHHHHHHHHHHHHhcC
Confidence            56799999999999999999999999999999999985
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure