Psyllid ID: psy1644

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920---
HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEAANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIALKGKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERKCSQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYFGILLDHGKLNKHESLELCRPVLAQVIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVGFAQMLVQDDEPLADINQSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDLVLYLYRNNLQKYIEIYVQKIRIKIKQSRFVHDLVLYLYRNNLQKYIEIYVQKVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQVLSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVFVHDLVLYLYRNNLQKYIEIYVQKRFDRENCNC
ccccEEEEEccccccccEEEEEEEEcccccEEEEEEccccccccccccEEEEEEEcccccccccccEEEEcccccEEEEEEcccEEEEEEcccccEEEEEEcccccEEEEccccccccEEEEEccccEEEEEEEccccccccEEEEEEEccccccEEEEEEccccccccccccccccccccccccEEEEccccccccccccccEEEEEEccccccccccEEcccEEEEccEEEEEEEEcccccEEEEEEccccccccccccccccccccccccEEEEEcccccccccccccEEEEEEcccccccccccccccEEEEEEccccEEEEEEccEEEEEcccccccccEEEcccccccccEEEEEEEcccccEEEEEEEEcccccccEEEEEEEccccccccccccEEEEEEcccccccccccEEEEEEEEEcccccccccEEEEccccccccccccccccccccHHHHcccccccccccccEEEEEEEcccccccEEEEEEEEEEcccccEEEEEEEEcccccEEEEccccccEEEEEcccccccccHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHccccHHHHHHHHHHHcccccEEEEEEEccEEEEEEcccHHHHHHcccccccEEEEccccccccEEEEcccccEEEEEccccccHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHEEEccccccccc
ccHEEEEEEccccccccEEEEEEEEcccccEEEEEEEcccccccccccccEEEEcccccccccccEEEEEcccccEEEEEEccEEEEEEEcccHHHEEEEccccccEEEEEccccccEEEEEEccccEEEEEEEccEEEccccEEEEEEccccccEEEEEEcccccccccccccccHEEEcccccEEEEEEEEEEEEcccHHHHHHEEEcccccccHccccccEEEEEcccEEEEEEEcccccEEEEEEcccccccccccccccHHEccccccEEEEEEccccccccccccEEEEEEccHHHHHccccccccEEEEEEEcccEEEEEEcccEEEEEcccccccEEEEEccccccccEEEEEEEccccccEEEEEEcccccccccHHHHHHHHHHccHHHHHHHHHHHHHccccccccccHEEEEEcccccccccccEEEEEcccccccccccccHHHHccHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHEEccHHcEEEEEEEHcccccHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHccccEEEEEccccHHHHHHHHHHcHHHHHHHHHHHccccccEEEEEEcccEEEEEEccccHEEEEEEcccccEEEEEcccccccEEEEEcccEEEEEEEcHHcHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHccccccccEEEEHHHHHHHHHHHcHHHHHHHHHHHHHccccccc
haasfasfksegnpepstlfcfavrtpaggklhiievgtppagntplakkavdvffppeaandfpvAMQVSAKYDVVYLITKFGYIHVYDIETATCIYmnrissdtifvtapheatggiigltnvgiNVGSVSFntltmesdkFICVREKIAESAQVVIIdmndptnpirrpisadsaimnPASKVIALkgkagndnnpngefknRIYLLTNVGINVGSVSFntltmesdkFICVREKIAESAQVVIIdmndptnpirrpisadsaimnPASKVIALkgkagndnnpnapktLQIFNIEMKSkmkahpmtdDVVFWKWISPNTLALVTETSVyhwsmegdstpekmfdrhstlngcqiinyrtdpkQTWLLLIGISAVSNRVVGAMQLYSVERKcsqpieekksrvaanapkgilrtpqtivkfqqvptpagqtspllQYFGILLdhgklnkheslELCRPVLAQVIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVmrvnpdqgvGFAQmlvqddepladiNQSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLkeakltdqlpliivcdrfdFVHDLVLYLYRNNLQKYIEIYVQKGRKHLLEKWLKEEKLECSEELgdlvkqsdptLALSVYLRANIKQSRFVHDLVLYLYRNNLQKYIEIYVQKIRIKIKQSRFVHDLVLYLYRNNLQKYIEIYVQKVSAKYDVVYLITKFGYIHVYDIETATCIYmnrissdtifvtapheatggiigvnrkgQVLSvsvdedniipyingtlqnpdLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAACKTGQIKEVERICRESNCYNAERVKNFLKeakltdqlplIIVFVHDLVLYLYRNNLQKYIEIYVQKRfdrencnc
haasfasfksegnpepsTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEAANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVviidmndptnpirrpisadsaimNPASKVIALkgkagndnnpnGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVviidmndptnpirrpisadsaimNPASKVIALkgkagndnnpnaPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERkcsqpieekksrvaanapkgilrtpqTIVKFQQVPTPAGQTSPLLQYFGILLDHGKLNKHESLELCRPVLAQVIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVGFAQMLVQDDEPLADINQSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLkeakltdqlPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKGRKHLLEKWLKEEKLECSEElgdlvkqsdPTLALSVYLRAnikqsrfvHDLVLYLYRNNLQKYIEIYVQKIRIKIKQSRFVHDLVLYLYRNNLQKYIEIYVQKVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEatggiigvnrkGQVLSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAACKTGQIKEVERICRESNCYNAERVKNFLKeakltdqlpLIIVFVHDLVLYLYRNNLQKYIEIYVQKrfdrencnc
HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEAANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIALKGKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERKCSQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYFGILLDHGKLNKHESLELCRPVLAQVIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVGFAQMLVQDDEPLADINQSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKGRkhllekwlkeeklecseelGDLVKQSDPTLALSVYLRANIKQSRFVHDLVLYLYRNNLQKYIEIYVQKIRIKIKQSRFVHDLVLYLYRNNLQKYIEIYVQKVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQVLSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVFVHDLVLYLYRNNLQKYIEIYVQKRFDRENCNC
*****************TLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEAANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMN**************************************EFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMN******************************************QIFNIE******AHPMTDDVVFWKWISPNTLALVTETSVYHWSME*******MFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERK*******************ILRTPQTIVKFQQVPTPAGQTSPLLQYFGILLDHGKLNKHESLELCRPVLAQVIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVGFAQMLVQDDEPLADINQSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDLVLYLYRNNLQKYIEIYVQKIRIKIKQSRFVHDLVLYLYRNNLQKYIEIYVQKVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQVLSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVFVHDLVLYLYRNNLQKYIEIYVQKRF*******
HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEV************KAVDVFFPPEAANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIALKGKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERKCSQPIEEKKSRVAANAPKGILRTPQTIVKFQQVP************************HESLELCRPVLAQVIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVGFAQMLVQDDEPLADINQSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVK********************FDFVHDLVLYLYRNNLQKYIEIYVQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDLVLYLYRNNLQKYIEIYVQKIRIKIKQSRFVHDLVLYLYRNNLQKYIEIYVQKVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQVLSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVFVHDLVLYLYRNNLQKYIEIYVQKR********
**************EPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEAANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIALKGKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERKCSQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYFGILLDHGKLNKHESLELCRPVLAQVIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVGFAQMLVQDDEPLADINQSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDLVLYLYRNNLQKYIEIYVQKIRIKIKQSRFVHDLVLYLYRNNLQKYIEIYVQKVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQVLSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSE*********QIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVFVHDLVLYLYRNNLQKYIEIYVQKRFDRENCNC
HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEAANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIALKGKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERKCSQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYFGILLDHGKLNKHESLELCRPVLAQVIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVGFAQMLVQDDEPLADINQSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDLVLYLYRNNLQKYIEIYVQKIRIKIKQSRFVHDLVLYLYRNNLQKYIEIYVQKVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQVLSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVFVHDLVLYLYRNNLQKYIEIYVQKRFDRENCNC
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEAANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIALKGKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERKCSQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYFGILLDHGKLNKHESLELCRPVLAQVIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVGFAQMLVQDDEPLADINQSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDLVLYLYRNNLQKYIEIYVQKIRIKIKQSRFVHDLVLYLYRNNLQKYIEIYVQKVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQVLSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVFVHDLVLYLYRNNLQKYIEIYVQKRFDRENCNC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query923 2.2.26 [Sep-21-2011]
P29742 1678 Clathrin heavy chain OS=D yes N/A 0.203 0.112 0.762 6e-83
P11442 1675 Clathrin heavy chain 1 OS yes N/A 0.210 0.115 0.735 1e-82
Q00610 1675 Clathrin heavy chain 1 OS yes N/A 0.210 0.115 0.735 1e-82
Q68FD5 1675 Clathrin heavy chain 1 OS yes N/A 0.210 0.115 0.735 1e-82
P49951 1675 Clathrin heavy chain 1 OS yes N/A 0.210 0.115 0.735 2e-82
P53675 1640 Clathrin heavy chain 2 OS no N/A 0.230 0.129 0.653 4e-79
P34574 1681 Probable clathrin heavy c yes N/A 0.196 0.107 0.612 9e-64
Q2QYW2 1708 Clathrin heavy chain 2 OS yes N/A 0.253 0.137 0.471 3e-55
Q2RBN7 1708 Clathrin heavy chain 1 OS yes N/A 0.253 0.137 0.471 3e-55
Q0WLB5 1703 Clathrin heavy chain 2 OS yes N/A 0.256 0.139 0.465 4e-55
>sp|P29742|CLH_DROME Clathrin heavy chain OS=Drosophila melanogaster GN=Chc PE=2 SV=1 Back     alignment and function desciption
 Score =  309 bits (792), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 151/198 (76%), Positives = 164/198 (82%), Gaps = 10/198 (5%)

Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
           LTNVGIN  S SF+TLTMESDKFICVREK+ ++AQVVIIDMND TNP RRPISADSAIMN
Sbjct: 15  LTNVGINANSFSFSTLTMESDKFICVREKVNDTAQVVIIDMNDATNPTRRPISADSAIMN 74

Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
           PASKVIALK          A KTLQIFNIEMKSKMKAH M +DVVFWKWIS NTLALVTE
Sbjct: 75  PASKVIALK----------AQKTLQIFNIEMKSKMKAHTMNEDVVFWKWISLNTLALVTE 124

Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389
           TSV+HWSMEGDS P+KMFDRHS+LNGCQIINYR +  Q WLLL+GISA+ +RV GAMQLY
Sbjct: 125 TSVFHWSMEGDSMPQKMFDRHSSLNGCQIINYRCNASQQWLLLVGISALPSRVAGAMQLY 184

Query: 390 SVERKCSQPIEEKKSRVA 407
           SVERK SQ IE   +  A
Sbjct: 185 SVERKVSQAIEGHAASFA 202
Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.
Drosophila melanogaster (taxid: 7227)
>sp|P11442|CLH1_RAT Clathrin heavy chain 1 OS=Rattus norvegicus GN=Cltc PE=1 SV=3 Back     alignment and function description
>sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5 Back     alignment and function description
>sp|Q68FD5|CLH1_MOUSE Clathrin heavy chain 1 OS=Mus musculus GN=Cltc PE=1 SV=3 Back     alignment and function description
>sp|P49951|CLH1_BOVIN Clathrin heavy chain 1 OS=Bos taurus GN=CLTC PE=1 SV=1 Back     alignment and function description
>sp|P53675|CLH2_HUMAN Clathrin heavy chain 2 OS=Homo sapiens GN=CLTCL1 PE=1 SV=2 Back     alignment and function description
>sp|P34574|CLH_CAEEL Probable clathrin heavy chain 1 OS=Caenorhabditis elegans GN=chc-1 PE=3 SV=1 Back     alignment and function description
>sp|Q2QYW2|CLH2_ORYSJ Clathrin heavy chain 2 OS=Oryza sativa subsp. japonica GN=Os12g0104800 PE=3 SV=1 Back     alignment and function description
>sp|Q2RBN7|CLH1_ORYSJ Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica GN=Os11g0104900 PE=3 SV=1 Back     alignment and function description
>sp|Q0WLB5|CLAH2_ARATH Clathrin heavy chain 2 OS=Arabidopsis thaliana GN=CHC2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query923
195394067 1427 GJ19488 [Drosophila virilis] gi|19415017 0.306 0.198 0.652 1e-107
328711155 1700 PREDICTED: clathrin heavy chain-like iso 0.213 0.115 0.818 1e-90
357631594 1681 clathrin heavy chain [Danaus plexippus] 0.216 0.118 0.799 1e-90
219362829 1681 clathrin heavy chain [Bombyx mori] gi|21 0.216 0.118 0.803 3e-90
242006398 1680 clathrin heavy chain, putative [Pediculu 0.202 0.111 0.837 8e-89
91085095 1684 PREDICTED: similar to AGAP003021-PA [Tri 0.216 0.118 0.784 1e-88
328711157 1693 PREDICTED: clathrin heavy chain-like iso 0.206 0.112 0.818 2e-88
307200331 1678 Clathrin heavy chain [Harpegnathos salta 0.210 0.115 0.799 3e-88
380013532 1635 PREDICTED: LOW QUALITY PROTEIN: clathrin 0.210 0.118 0.799 4e-88
307168135 1676 Clathrin heavy chain [Camponotus florida 0.210 0.115 0.799 4e-88
>gi|195394067|ref|XP_002055667.1| GJ19488 [Drosophila virilis] gi|194150177|gb|EDW65868.1| GJ19488 [Drosophila virilis] Back     alignment and taxonomy information
 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/317 (65%), Positives = 231/317 (72%), Gaps = 34/317 (10%)

Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
           LTNVGIN  S SF+TLTMESDKFICVREK  ++AQVVIIDMND +NP RRPISADSAIMN
Sbjct: 15  LTNVGINPNSFSFSTLTMESDKFICVREKTNDTAQVVIIDMNDSSNPTRRPISADSAIMN 74

Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
           PASKVIALK          A KTLQIFNIEMKSKMKAH M +DVVFWKWIS NTLALVTE
Sbjct: 75  PASKVIALK----------AQKTLQIFNIEMKSKMKAHTMNEDVVFWKWISLNTLALVTE 124

Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389
           TSV+HWSMEGDS P+KMFDRHS+LNGCQIINYR +  Q WLLL+GISA+ +RV GAMQLY
Sbjct: 125 TSVFHWSMEGDSMPQKMFDRHSSLNGCQIINYRCNASQQWLLLVGISALPSRVAGAMQLY 184

Query: 390 SVERKCSQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYFGILLDHGK 449
           SVERK SQ IE   +  A +      R  + +V          +TS L     I +    
Sbjct: 185 SVERKVSQAIEGHAASFATSRS----RCSENLVDL-------VKTSDLTLALSIYMRANV 233

Query: 450 LNKHESLELCRPVLAQVIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVG 509
            NK             VIQ FAETGQFQKIVLYAKKV Y+PDY+FLLR+VMR NP+QG G
Sbjct: 234 PNK-------------VIQCFAETGQFQKIVLYAKKVNYTPDYIFLLRSVMRSNPEQGAG 280

Query: 510 FAQMLVQDDEPLADINQ 526
           FA MLV ++EPLADINQ
Sbjct: 281 FASMLVAEEEPLADINQ 297

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328711155|ref|XP_003244459.1| PREDICTED: clathrin heavy chain-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|357631594|gb|EHJ79063.1| clathrin heavy chain [Danaus plexippus] Back     alignment and taxonomy information
>gi|219362829|ref|NP_001136443.1| clathrin heavy chain [Bombyx mori] gi|218563475|dbj|BAH03459.1| clathrin [Bombyx mori] Back     alignment and taxonomy information
>gi|242006398|ref|XP_002424037.1| clathrin heavy chain, putative [Pediculus humanus corporis] gi|212507343|gb|EEB11299.1| clathrin heavy chain, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|91085095|ref|XP_967829.1| PREDICTED: similar to AGAP003021-PA [Tribolium castaneum] gi|270008499|gb|EFA04947.1| hypothetical protein TcasGA2_TC015014 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328711157|ref|XP_001945333.2| PREDICTED: clathrin heavy chain-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307200331|gb|EFN80585.1| Clathrin heavy chain [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|380013532|ref|XP_003690808.1| PREDICTED: LOW QUALITY PROTEIN: clathrin heavy chain-like [Apis florea] Back     alignment and taxonomy information
>gi|307168135|gb|EFN61414.1| Clathrin heavy chain [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query923
FB|FBgn0000319 1678 Chc "Clathrin heavy chain" [Dr 0.196 0.107 0.785 5.2e-157
UNIPROTKB|F1MPU0 1661 CLTC "Clathrin heavy chain 1" 0.196 0.108 0.780 1.8e-153
UNIPROTKB|Q00610 1675 CLTC "Clathrin heavy chain 1" 0.196 0.108 0.780 1.9e-153
MGI|MGI:2388633 1675 Cltc "clathrin, heavy polypept 0.196 0.108 0.780 1.9e-153
UNIPROTKB|F1PHQ0 1675 CLTC "Uncharacterized protein" 0.196 0.108 0.780 1.9e-153
UNIPROTKB|P49951 1675 CLTC "Clathrin heavy chain 1" 0.196 0.108 0.780 1.9e-153
UNIPROTKB|D4AD25 1679 Cltc "Clathrin heavy chain 1" 0.200 0.110 0.769 2.5e-153
ZFIN|ZDB-GENE-050227-12 1683 cltcb "clathrin, heavy polypep 0.201 0.110 0.764 2.6e-153
RGD|2364 1675 Cltc "clathrin, heavy chain (H 0.196 0.108 0.780 6.5e-153
UNIPROTKB|P11442 1675 Cltc "Clathrin heavy chain 1" 0.196 0.108 0.780 6.5e-153
FB|FBgn0000319 Chc "Clathrin heavy chain" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 745 (267.3 bits), Expect = 5.2e-157, Sum P(3) = 5.2e-157
 Identities = 150/191 (78%), Positives = 162/191 (84%)

Query:   210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
             LTNVGIN  S SF+TLTMESDKFICVREK+ ++AQVVIIDMND TNP RRPISADSAIMN
Sbjct:    15 LTNVGINANSFSFSTLTMESDKFICVREKVNDTAQVVIIDMNDATNPTRRPISADSAIMN 74

Query:   270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
             PASKVIALK          A KTLQIFNIEMKSKMKAH M +DVVFWKWIS NTLALVTE
Sbjct:    75 PASKVIALK----------AQKTLQIFNIEMKSKMKAHTMNEDVVFWKWISLNTLALVTE 124

Query:   330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389
             TSV+HWSMEGDS P+KMFDRHS+LNGCQIINYR +  Q WLLL+GISA+ +RV GAMQLY
Sbjct:   125 TSVFHWSMEGDSMPQKMFDRHSSLNGCQIINYRCNASQQWLLLVGISALPSRVAGAMQLY 184

Query:   390 SVERKCSQPIE 400
             SVERK SQ IE
Sbjct:   185 SVERKVSQAIE 195
GO:0007291 "sperm individualization" evidence=IMP
GO:0016183 "synaptic vesicle coating" evidence=NAS;TAS
GO:0008021 "synaptic vesicle" evidence=TAS
GO:0030125 "clathrin vesicle coat" evidence=TAS
GO:0005905 "coated pit" evidence=TAS
GO:0030135 "coated vesicle" evidence=TAS
GO:0007269 "neurotransmitter secretion" evidence=NAS
GO:0030129 "clathrin coat of synaptic vesicle" evidence=NAS
GO:0030132 "clathrin coat of coated pit" evidence=IEA;NAS
GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA
GO:0005198 "structural molecule activity" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0033227 "dsRNA transport" evidence=IMP
GO:0005811 "lipid particle" evidence=IDA
GO:0035002 "liquid clearance, open tracheal system" evidence=IMP
GO:0030198 "extracellular matrix organization" evidence=IMP
GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP
GO:0045807 "positive regulation of endocytosis" evidence=IMP
GO:0046667 "compound eye retinal cell programmed cell death" evidence=IMP
GO:0005886 "plasma membrane" evidence=IDA
GO:0031410 "cytoplasmic vesicle" evidence=IDA
GO:0030136 "clathrin-coated vesicle" evidence=IDA
GO:0048471 "perinuclear region of cytoplasm" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
GO:0044459 "plasma membrane part" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0006897 "endocytosis" evidence=IMP
GO:0045747 "positive regulation of Notch signaling pathway" evidence=IMP
GO:0040008 "regulation of growth" evidence=IMP
GO:0033363 "secretory granule organization" evidence=IMP
GO:0030141 "secretory granule" evidence=IDA
GO:0007594 "puparial adhesion" evidence=IMP
GO:0048749 "compound eye development" evidence=IMP
UNIPROTKB|F1MPU0 CLTC "Clathrin heavy chain 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q00610 CLTC "Clathrin heavy chain 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2388633 Cltc "clathrin, heavy polypeptide (Hc)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PHQ0 CLTC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P49951 CLTC "Clathrin heavy chain 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|D4AD25 Cltc "Clathrin heavy chain 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050227-12 cltcb "clathrin, heavy polypeptide b (Hc)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|2364 Cltc "clathrin, heavy chain (Hc)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P11442 Cltc "Clathrin heavy chain 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query923
smart00299140 smart00299, CLH, Clathrin heavy chain repeat homol 3e-22
pfam1383866 pfam13838, Clathrin_H_link, Clathrin-H-link 2e-19
pfam00637143 pfam00637, Clathrin, Region in Clathrin and VPS 2e-17
smart00299140 smart00299, CLH, Clathrin heavy chain repeat homol 2e-12
pfam00637143 pfam00637, Clathrin, Region in Clathrin and VPS 3e-09
pfam1383866 pfam13838, Clathrin_H_link, Clathrin-H-link 3e-08
pfam0926824 pfam09268, Clathrin-link, Clathrin, heavy-chain li 2e-07
pfam0139437 pfam01394, Clathrin_propel, Clathrin propeller rep 0.004
>gnl|CDD|128594 smart00299, CLH, Clathrin heavy chain repeat homology Back     alignment and domain information 
 Score = 93.1 bits (232), Expect = 3e-22
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 6/112 (5%)

Query: 528 YEGLFYFLGSIVN-YSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKEA 586
            E L  +L S +   S++  +  K I+   K    KE+ER+  +SN Y+ E+V    ++A
Sbjct: 23  LEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCEKA 82

Query: 587 KLTDQLPLIIVCDRFDFVHDLVLYLYR-NNLQKYIEIYVQKGRKHLLEKWLK 637
           KL ++   +   D  +F   +V  +    N +K IE +V++      E W +
Sbjct: 83  KLYEEAVELYKKD-GNFKDAIVTLIEHLGNYEKAIEYFVKQNNP---ELWAE 130

Length = 140
>gnl|CDD|206009 pfam13838, Clathrin_H_link, Clathrin-H-link Back     alignment and domain information
>gnl|CDD|216037 pfam00637, Clathrin, Region in Clathrin and VPS Back     alignment and domain information
>gnl|CDD|128594 smart00299, CLH, Clathrin heavy chain repeat homology Back     alignment and domain information
>gnl|CDD|216037 pfam00637, Clathrin, Region in Clathrin and VPS Back     alignment and domain information
>gnl|CDD|206009 pfam13838, Clathrin_H_link, Clathrin-H-link Back     alignment and domain information
>gnl|CDD|150065 pfam09268, Clathrin-link, Clathrin, heavy-chain linker Back     alignment and domain information
>gnl|CDD|216475 pfam01394, Clathrin_propel, Clathrin propeller repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 923
KOG0985|consensus 1666 100.0
KOG0985|consensus 1666 100.0
PF1383866 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1 99.65
PF1383866 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1 99.17
PF0139437 Clathrin_propel: Clathrin propeller repeat; InterP 98.56
PF0926824 Clathrin-link: Clathrin, heavy-chain linker; Inter 98.35
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 97.88
smart00299140 CLH Clathrin heavy chain repeat homology. 96.96
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 95.99
smart00299140 CLH Clathrin heavy chain repeat homology. 95.86
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 95.65
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 95.64
PF00637143 Clathrin: Region in Clathrin and VPS; InterPro: IP 95.07
PF0139437 Clathrin_propel: Clathrin propeller repeat; InterP 94.7
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 94.55
PF00637143 Clathrin: Region in Clathrin and VPS; InterPro: IP 92.01
KOG0279|consensus315 90.88
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 90.13
KOG1645|consensus463 88.25
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 87.82
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 87.44
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 87.41
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 86.25
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 86.15
PRK11028330 6-phosphogluconolactonase; Provisional 85.64
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 83.58
KOG0650|consensus733 83.3
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 83.21
KOG0292|consensus1202 82.97
KOG2315|consensus566 82.92
PRK03629429 tolB translocation protein TolB; Provisional 82.18
PLN00181793 protein SPA1-RELATED; Provisional 80.65
>KOG0985|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.3e-190  Score=1620.80  Aligned_cols=499  Identities=66%  Similarity=1.036  Sum_probs=488.8

Q ss_pred             ccceeeeccccccccCCcccccceeeecceEEEEEeccCCCceEEEEECCCCCCCcccccCccccccCCCccEEEEeccC
Q psy1644         202 EFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIALKGKA  281 (923)
Q Consensus       202 ~~~~e~~~Lt~lGI~~~si~F~~lTmESDkyICVRE~~~~~~qVvIVDL~n~~~v~Rrpi~ADSAIMnP~~~IIALra~~  281 (923)
                      .|. ||+||+|+||+|++|+|+++||||||||||||+.|+++|||||||+++.+|+||||+||||||||+++|||||   
T Consensus         7 ~f~-E~lqL~~~GI~~~~~~F~~~TmESDk~icvRe~~~~~~qVvIiDm~d~~~piRRpisadSaIm~P~kkvialk---   82 (1666)
T KOG0985|consen    7 RFQ-EHLQLQNLGINPQNIGFSNVTMESDKFICVREKVGGQNQVVIIDMADPVNPIRRPISADSAIMNPDKKVIALK---   82 (1666)
T ss_pred             eHH-HHhcccccCcCccccccceeeeecCceEEEeccCCCcceEEEEEcCCCcccccCCCCCCchhhCchHHHHHHh---
Confidence            455 9999999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             CCCCCCCCCCeEEEEecccccccccccCCCceeEEEeccCCeEEEEecCeEEEEeccCCCCchhhhhcccCCCCCeeEee
Q psy1644         282 GNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINY  361 (923)
Q Consensus       282 ~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWis~~tLglVT~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInY  361 (923)
                             +|++|||||+|+|+|+|+|+|+|+|+||||||+++||+||+||||||+++|+++|+||||||++|+|||||||
T Consensus        83 -------a~~~lQIFniE~KsK~ksh~m~E~VifWkWIs~kti~lVT~tsV~hws~egds~PvkmfdRh~sL~gcQiIny  155 (1666)
T KOG0985|consen   83 -------AGKTLQIFNIERKSKSKAHTMDEDVIFWKWISDKTIALVTATSVYHWSKEGDSAPVKMFDRHRSLNGCQIINY  155 (1666)
T ss_pred             -------hCCeEEEEehhhhhhhccCCCCCceEEEEecchhHHHHhhhhheeeecccccchHHHHHHhhhccccceEEEe
Confidence                   6889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCeEEEEeeecccccccceeeecccccccccccccce--------------------------------------
Q psy1644         362 RTDPKQTWLLLIGISAVSNRVVGAMQLYSVERKCSQPIEEKK--------------------------------------  403 (923)
Q Consensus       362 r~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~~SQ~iEGk~--------------------------------------  403 (923)
                      ++|..++|++|+||+++++||+|+|||||++|++||+|||++                                      
T Consensus       156 k~~~~~eWl~LVGIs~r~~rv~G~MQLyS~~rkvSQ~iegHaa~Fa~fk~egne~p~~lF~fa~r~~~~GkLhiiEvg~~  235 (1666)
T KOG0985|consen  156 KGNLNAEWLALVGISARTNRVAGKMQLYSVDRKVSQPIEGHAASFAAFKDEGNEVPSCLFSFAVRKPTGGKLHIIEVGDP  235 (1666)
T ss_pred             ccccccCceeEEeeecccchhheeeeeeeeccchhhhhHHHHHHHHHhcccCCCCceEEEEecCCCCCCCeeEEEecCCC
Confidence            999999999999999999999999999999999999999900                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy1644         404 --------------------------------------------------------------------------------  403 (923)
Q Consensus       404 --------------------------------------------------------------------------------  403 (923)
                                                                                                      
T Consensus       236 ~tg~~~f~kk~vDvffppda~nDFPvamqvs~k~~vIyLiTKyG~ihlYdlEt~tciy~NRIs~dtIFvta~~~~s~Gi~  315 (1666)
T KOG0985|consen  236 PTGNMPFLKKKVDVFFPPDAINDFPVAMQVSAKYGVIYLITKYGYIHLYDLETGTCIYRNRISADTIFVTAPHDSSSGIQ  315 (1666)
T ss_pred             ccCCCcchhhhhhccCChhhccccchheeeccccCeEEEEeecchhhhhhhhhhhhhhhhhccccceeEecccccCcchh
Confidence                                                                                            


Q ss_pred             ----------------------------------------------------------------eEEeccCCCccccCHH
Q psy1644         404 ----------------------------------------------------------------SRVAANAPKGILRTPQ  419 (923)
Q Consensus       404 ----------------------------------------------------------------AkvAA~SP~giLRt~e  419 (923)
                                                                                      ||+||+||+||||||+
T Consensus       316 ~iNrKGQVLsv~v~e~~IVpyi~~~LqnpeLal~~A~R~nLaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsSPrgILRt~~  395 (1666)
T KOG0985|consen  316 GINRKGQVLSVLVNEQNIVPYITNVLQNPELALRLAVRANLAGAENLFVRRFNELFAQGEYEEAAKVAASSPRGILRTPG  395 (1666)
T ss_pred             hhhhcceEEEEEecCcceehhhhccccChHHHHHhhhhcCCccHHHHHHHHHHHHHhCccHHHHHHHHHhCchhhhcCHH
Confidence                                                                            9999999999999999


Q ss_pred             HHHhhhcCCCCCCCCchHHHHHHHHHhcCCCCcccccccchhhHHH----------------------------------
Q psy1644         420 TIVKFQQVPTPAGQTSPLLQYFGILLDHGKLNKHESLELCRPVLAQ----------------------------------  465 (923)
Q Consensus       420 TI~rFK~vp~~pGq~sPLL~YF~~LL~~g~LN~~ESlEL~rpVL~Q----------------------------------  465 (923)
                      ||+|||++|++|||++|||||||+||++|+||++||||||||||+|                                  
T Consensus       396 Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqGkLNk~ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL  475 (1666)
T KOG0985|consen  396 TINKFQSVPAQPGQPSPLLQYFGTLLDQGKLNKYETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLAL  475 (1666)
T ss_pred             HHHHHHcCCCCCCCCCcHHHHHHHHHhcccccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHH
Confidence            9999999999999999999999999999999999999999999999                                  


Q ss_pred             -----------HHHHHHHhcChhHHHHHHHHhCCCccHHHHHHHHHhcCCchhhHHHHhhhcCCCCCcCccc--------
Q psy1644         466 -----------VIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVGFAQMLVQDDEPLADINQ--------  526 (923)
Q Consensus       466 -----------Vi~clae~Gqfdkiv~Y~~~vgytpDy~~LL~~i~~~nP~~a~efA~~L~~~~~pl~di~~--------  526 (923)
                                 |++||||+|||+||+.||+|+||||||+++||+++|++||+|++||.||.++++|++|+++        
T Consensus       476 ~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPdymflLq~l~r~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~  555 (1666)
T KOG0985|consen  476 SIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPDYMFLLQQLKRSSPDQALQFAMMLVQDEEPLADIEQIVDLFMEL  555 (1666)
T ss_pred             HHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCccHHHHHHHHHccChhHHHHHHHHhhccCCCcccHHHHHHHHHHH
Confidence                       9999999999999999999999999999999999999999999999999999999999998        


Q ss_pred             --------------------------------------------------------------------------------
Q psy1644         527 --------------------------------------------------------------------------------  526 (923)
Q Consensus       527 --------------------------------------------------------------------------------  526 (923)
                                                                                                      
T Consensus       556 N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DI  635 (1666)
T KOG0985|consen  556 NLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDI  635 (1666)
T ss_pred             HhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHH
Confidence                                                                                            


Q ss_pred             ----------------------------------------------------------------------cchhhhhhhc
Q psy1644         527 ----------------------------------------------------------------------SYEGLFYFLG  536 (923)
Q Consensus       527 ----------------------------------------------------------------------~~egLyy~Lg  536 (923)
                                                                                            +|||||||||
T Consensus       636 KR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLg  715 (1666)
T KOG0985|consen  636 KRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLG  715 (1666)
T ss_pred             HHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHH
Confidence                                                                                  6999999999


Q ss_pred             ccccccCCcchhhHHHHHHHhcCChhhhHHhhhcCCccChHHHHhHHhhccCCCCCceEEeeccccchhHHHHHHHhcCc
Q psy1644         537 SIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNL  616 (923)
Q Consensus       537 sivn~s~d~dVhfKYIeAA~k~gq~~EvERicresn~YdpekvKnfLKeakL~d~~PLI~VCDrf~fV~dLv~YLY~n~~  616 (923)
                      ||||+|||||||||||||||||||+|||||||||||||||||||||||||||+||+||||||||||||||||+|||+||+
T Consensus       716 Sivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~  795 (1666)
T KOG0985|consen  716 SIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNL  795 (1666)
T ss_pred             HHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hheehhhhhccCccccceeee-eccccCCHHHhhhhhccCcchhhhHHhhhccccccchhhHHHHH-hhcchhHHHHHHH
Q psy1644         617 QKYIEIYVQKGRKHLLEKWLK-EEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDLVLYL-YRNNLQKYIEIYV  694 (923)
Q Consensus       617 ~k~IEvYvqkvNp~~tP~Vvg-LlD~dc~E~~Ik~LL~sv~~l~~~~~v~~~~~~~~pv~~Lv~ev-~RnrL~kll~p~L  694 (923)
                      +||||+|||||||+|||+||| |||+|||||+||+|++||             +|++|+||||+|| ||||| |||+|||
T Consensus       796 ~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v-------------~gq~~~deLv~EvEkRNRL-klLlp~L  861 (1666)
T KOG0985|consen  796 QKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSV-------------RGQFPVDELVEEVEKRNRL-KLLLPWL  861 (1666)
T ss_pred             HHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHH-------------hccCChHHHHHHHHhhhhH-HHHHHHH
Confidence            999999999999999999999 999999999999999996             6777999999999 69999 9999999


Q ss_pred             HHHHHhhcccchhhhHHHHhH---hcCccceeee
Q psy1644         695 QKIRIKIKQSRFVHDLVLYLY---RNNLQKYIEI  725 (923)
Q Consensus       695 E~~~~~g~q~~~v~nalakiy---~~~~~~~~~i  725 (923)
                      |++++||+||||+||||||||   +++|++|+.=
T Consensus       862 E~~i~eG~~d~a~hnAlaKIyIDSNNnPE~fLke  895 (1666)
T KOG0985|consen  862 ESLIQEGSQDPATHNALAKIYIDSNNNPERFLKE  895 (1666)
T ss_pred             HHHHhccCcchHHHhhhhheeecCCCChHHhccc
Confidence            999999999999999999999   7779988753

>KOG0985|consensus Back     alignment and domain information
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A Back     alignment and domain information
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A Back     alignment and domain information
>PF01394 Clathrin_propel: Clathrin propeller repeat; InterPro: IPR022365 This entry represents the propeller repeat found in clathrin heavy chains Back     alignment and domain information
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>smart00299 CLH Clathrin heavy chain repeat homology Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>smart00299 CLH Clathrin heavy chain repeat homology Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF01394 Clathrin_propel: Clathrin propeller repeat; InterPro: IPR022365 This entry represents the propeller repeat found in clathrin heavy chains Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0279|consensus Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>KOG1645|consensus Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0650|consensus Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>KOG0292|consensus Back     alignment and domain information
>KOG2315|consensus Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query923
1xi4_A 1630 Clathrin D6 Coat Length = 1630 6e-84
1xi4_A 1630 Clathrin D6 Coat Length = 1630 3e-52
1xi4_A 1630 Clathrin D6 Coat Length = 1630 3e-52
1xi4_A 1630 Clathrin D6 Coat Length = 1630 2e-31
1bpo_A494 Clathrin Heavy-Chain Terminal Domain And Linker Len 1e-83
1bpo_A494 Clathrin Heavy-Chain Terminal Domain And Linker Len 3e-52
1utc_A363 Clathrin Terminal Domain Complexed With Tlpwdlwtt L 1e-83
1utc_A363 Clathrin Terminal Domain Complexed With Tlpwdlwtt L 4e-43
2xzg_A365 Clathrin Terminal Domain Complexed With Pitstop 1 L 1e-83
2xzg_A365 Clathrin Terminal Domain Complexed With Pitstop 1 L 8e-44
4g55_A369 Clathrin Terminal Domain Complexed With Pitstop 2 L 1e-83
4g55_A369 Clathrin Terminal Domain Complexed With Pitstop 2 L 8e-44
1c9i_A359 Peptide-In-Groove Interactions Link Target Proteins 2e-83
1c9i_A359 Peptide-In-Groove Interactions Link Target Proteins 4e-41
1c9l_A357 Peptide-In-Groove Interactions Link Target Proteins 2e-83
1c9l_A357 Peptide-In-Groove Interactions Link Target Proteins 4e-41
>pdb|1XI4|A Chain A, Clathrin D6 Coat Length = 1630 Back     alignment and structure 
Iteration: 1

 Score =  308 bits (790), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 150/204 (73%), Positives = 165/204 (80%), Gaps = 10/204 (4%)
Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
           L N+GIN  ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 15  LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 74
Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
           PASKVIALK          A KTLQIFNIEMKSKMKAH MTDDV FWKWIS NT+ALVT+
Sbjct: 75  PASKVIALK----------AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTD 124
Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389
            +VYHWSMEG+S P KMFDRHS+L GCQIINYRTD KQ WLLL GISA  NRVVGAMQLY
Sbjct: 125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184
Query: 390 SVERKCSQPIEEKKSRVAANAPKG 413
           SV+RK SQPIE   +  A    +G
Sbjct: 185 SVDRKVSQPIEGHAASFAQFKMEG 208
>pdb|1XI4|A Chain A, Clathrin D6 Coat Length = 1630 Back     alignment and structure
>pdb|1XI4|A Chain A, Clathrin D6 Coat Length = 1630 Back     alignment and structure
>pdb|1XI4|A Chain A, Clathrin D6 Coat Length = 1630 Back     alignment and structure
>pdb|1BPO|A Chain A, Clathrin Heavy-Chain Terminal Domain And Linker Length = 494 Back     alignment and structure
>pdb|1BPO|A Chain A, Clathrin Heavy-Chain Terminal Domain And Linker Length = 494 Back     alignment and structure
>pdb|1UTC|A Chain A, Clathrin Terminal Domain Complexed With Tlpwdlwtt Length = 363 Back     alignment and structure
>pdb|1UTC|A Chain A, Clathrin Terminal Domain Complexed With Tlpwdlwtt Length = 363 Back     alignment and structure
>pdb|2XZG|A Chain A, Clathrin Terminal Domain Complexed With Pitstop 1 Length = 365 Back     alignment and structure
>pdb|2XZG|A Chain A, Clathrin Terminal Domain Complexed With Pitstop 1 Length = 365 Back     alignment and structure
>pdb|4G55|A Chain A, Clathrin Terminal Domain Complexed With Pitstop 2 Length = 369 Back     alignment and structure
>pdb|4G55|A Chain A, Clathrin Terminal Domain Complexed With Pitstop 2 Length = 369 Back     alignment and structure
>pdb|1C9I|A Chain A, Peptide-In-Groove Interactions Link Target Proteins To The B-Propeller Of Clathrin Length = 359 Back     alignment and structure
>pdb|1C9I|A Chain A, Peptide-In-Groove Interactions Link Target Proteins To The B-Propeller Of Clathrin Length = 359 Back     alignment and structure
>pdb|1C9L|A Chain A, Peptide-In-Groove Interactions Link Target Proteins To The B-Propeller Of Clathrin Length = 357 Back     alignment and structure
>pdb|1C9L|A Chain A, Peptide-In-Groove Interactions Link Target Proteins To The B-Propeller Of Clathrin Length = 357 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query923
2xzh_A365 Clathrin heavy chain 1; endocytosis, endocytosis i 8e-88
2xzh_A365 Clathrin heavy chain 1; endocytosis, endocytosis i 2e-58
2xzh_A365 Clathrin heavy chain 1; endocytosis, endocytosis i 1e-45
2xzh_A365 Clathrin heavy chain 1; endocytosis, endocytosis i 1e-27
1bpo_A494 Protein (clathrin); clathrin endocytosis beta-prop 7e-87
1bpo_A494 Protein (clathrin); clathrin endocytosis beta-prop 1e-56
1bpo_A494 Protein (clathrin); clathrin endocytosis beta-prop 2e-48
1bpo_A494 Protein (clathrin); clathrin endocytosis beta-prop 3e-27
1bpo_A494 Protein (clathrin); clathrin endocytosis beta-prop 7e-25
1bpo_A494 Protein (clathrin); clathrin endocytosis beta-prop 2e-16
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 5e-79
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 3e-54
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 7e-53
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 1e-49
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 2e-44
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 2e-28
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 6e-26
1xi4_A1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 Length = 494 Back     alignment and structure
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 Length = 494 Back     alignment and structure
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 Length = 494 Back     alignment and structure
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 Length = 494 Back     alignment and structure
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 Length = 494 Back     alignment and structure
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 Length = 494 Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Length = 1630 Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Length = 1630 Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Length = 1630 Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Length = 1630 Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Length = 1630 Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Length = 1630 Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Length = 1630 Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Length = 1630 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query923
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 100.0
1bpo_A494 Protein (clathrin); clathrin endocytosis beta-prop 100.0
2xzh_A365 Clathrin heavy chain 1; endocytosis, endocytosis i 100.0
1bpo_A494 Protein (clathrin); clathrin endocytosis beta-prop 100.0
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 100.0
2xzh_A365 Clathrin heavy chain 1; endocytosis, endocytosis i 100.0
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 98.0
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 97.98
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 97.67
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 97.65
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 97.61
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 97.55
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 97.46
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 97.38
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 97.38
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 97.34
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 97.24
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 97.23
2xyi_A430 Probable histone-binding protein CAF1; transcripti 97.18
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 97.15
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 97.14
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 97.13
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 97.09
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 97.06
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 97.01
3jrp_A379 Fusion protein of protein transport protein SEC13 96.98
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 96.98
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 96.95
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 96.88
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 96.88
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 96.88
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 96.88
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 96.87
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 96.85
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 96.81
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 96.81
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 96.8
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 96.8
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 96.78
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 96.75
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 96.71
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 96.67
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 96.63
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 96.6
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 96.49
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 96.49
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 96.42
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 96.41
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 96.4
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 96.39
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 96.37
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 96.34
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.3
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 96.26
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 96.25
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 96.22
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 96.19
3jro_A753 Fusion protein of protein transport protein SEC13 96.15
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 96.12
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 96.06
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 95.99
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 95.98
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 95.97
3ow8_A321 WD repeat-containing protein 61; structural genomi 95.96
4g56_B357 MGC81050 protein; protein arginine methyltransfera 95.92
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 95.9
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 95.89
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 95.88
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 95.69
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 95.57
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 95.44
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 95.36
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 95.17
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 95.1
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 95.02
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 94.96
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 94.95
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 94.9
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 94.84
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 94.73
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 94.71
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 94.66
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 94.64
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 94.27
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 94.12
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 93.98
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 93.9
4e54_B435 DNA damage-binding protein 2; beta barrel, double 93.82
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 93.81
1k32_A1045 Tricorn protease; protein degradation, substrate g 93.8
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 93.8
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 93.75
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 93.58
3ow8_A321 WD repeat-containing protein 61; structural genomi 93.56
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 93.47
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 93.28
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 93.25
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 93.21
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 93.18
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 93.12
1qks_A567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 92.97
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 92.86
2z3z_A706 Dipeptidyl aminopeptidase IV; peptidase family S9, 92.64
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 92.53
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 92.46
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 92.32
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 92.14
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 92.0
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 92.0
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 91.65
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 91.63
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 90.78
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 90.76
4e54_B435 DNA damage-binding protein 2; beta barrel, double 90.12
3pe7_A388 Oligogalacturonate lyase; seven-bladed beta-propel 89.68
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 89.35
4fhn_B 1139 Nucleoporin NUP120; protein complex,structural pro 89.34
2oiz_A361 Aromatic amine dehydrogenase, large subunit; oxido 89.29
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 89.19
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 88.81
2ymu_A577 WD-40 repeat protein; unknown function, two domain 88.81
2j04_A588 TAU60, YPL007P, hypothetical protein YPL007C; beta 88.37
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 88.26
4g56_B357 MGC81050 protein; protein arginine methyltransfera 88.23
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 88.07
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 87.84
3jrp_A379 Fusion protein of protein transport protein SEC13 87.7
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 87.11
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 87.04
3jro_A753 Fusion protein of protein transport protein SEC13 86.52
4g26_A501 Pentatricopeptide repeat-containing protein AT2G3 86.39
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 85.6
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 85.18
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 85.18
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 84.64
2xyi_A430 Probable histone-binding protein CAF1; transcripti 84.56
2ymu_A577 WD-40 repeat protein; unknown function, two domain 83.45
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 83.43
1xfd_A723 DIP, dipeptidyl aminopeptidase-like protein 6, dip 83.4
4gq2_M950 Nucleoporin NUP120; beta propeller alpha helical, 82.55
2z3z_A706 Dipeptidyl aminopeptidase IV; peptidase family S9, 81.68
2xdw_A710 Prolyl endopeptidase; alpha/beta-hydrolase, amnesi 81.36
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 80.82
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
Probab=100.00  E-value=5.7e-185  Score=1669.43  Aligned_cols=498  Identities=72%  Similarity=1.095  Sum_probs=487.6

Q ss_pred             ccceeeeccccccccCCcccccceeeecceEEEEEeccCCCceEEEEECCCCCCCcccccCccccccCCCccEEEEeccC
Q psy1644         202 EFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIALKGKA  281 (923)
Q Consensus       202 ~~~~e~~~Lt~lGI~~~si~F~~lTmESDkyICVRE~~~~~~qVvIVDL~n~~~v~Rrpi~ADSAIMnP~~~IIALra~~  281 (923)
                      .|+ |+++|+++||+|++|+|++|||||||||||||++|+++|||||||.||++|+||||+||||||||+++|||||   
T Consensus         8 ~~~-e~~~L~~lGi~~~~i~f~~~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~rrpi~AdsAIMnP~~~iiALr---   83 (1630)
T 1xi4_A            8 RFQ-EHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALK---   83 (1630)
T ss_pred             ehh-hhhhhhhcCCCcccccccceeeecCceEEEEecCCCCceEEEEECCCCCCcccccccchhhccCCCcceEEEe---
Confidence            344 9999999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             CCCCCCCCCCeEEEEecccccccccccCCCceeEEEeccCCeEEEEecCeEEEEeccCCCCchhhhhcccCCCCCeeEee
Q psy1644         282 GNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINY  361 (923)
Q Consensus       282 ~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWis~~tLglVT~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInY  361 (923)
                             +|++|||||||+|+|||+|+|+|+|+||||||+++|||||+|+||||+|+|+++|+||||||++|+|||||||
T Consensus        84 -------ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY  156 (1630)
T 1xi4_A           84 -------AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINY  156 (1630)
T ss_pred             -------cCCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEe
Confidence                   6999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCeEEEEeeecccccccceeeeccccccccccccc------------------------c---------------
Q psy1644         362 RTDPKQTWLLLIGISAVSNRVVGAMQLYSVERKCSQPIEE------------------------K---------------  402 (923)
Q Consensus       362 r~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~~SQ~iEG------------------------k---------------  402 (923)
                      |+|+++|||+|+||++++|+|+|+|||||+||++||+|||                        |               
T Consensus       157 ~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~  236 (1630)
T 1xi4_A          157 RTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP  236 (1630)
T ss_pred             eeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCC
Confidence            9999999999999999999999999999999999999999                        0               


Q ss_pred             ---------e----------------------------------------------------------------------
Q psy1644         403 ---------K----------------------------------------------------------------------  403 (923)
Q Consensus       403 ---------~----------------------------------------------------------------------  403 (923)
                               |                                                                      
T Consensus       237 ~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~  316 (1630)
T 1xi4_A          237 PTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII  316 (1630)
T ss_pred             ccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceE
Confidence                     0                                                                      


Q ss_pred             ----------------------------------------------------------------eEEeccCCCccccCHH
Q psy1644         404 ----------------------------------------------------------------SRVAANAPKGILRTPQ  419 (923)
Q Consensus       404 ----------------------------------------------------------------AkvAA~SP~giLRt~e  419 (923)
                                                                                      |++||+||+|+||||+
T Consensus       317 ~vnr~G~vl~v~v~~~~iv~yi~~~l~~~~la~~~a~r~~lpGad~l~~~~F~~l~~~g~y~~AA~~aa~sp~giLRt~~  396 (1630)
T 1xi4_A          317 GVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPD  396 (1630)
T ss_pred             EEcCCceEEEEEEccchhhhhHhhccCCHHHHHHHHHhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHH
Confidence                                                                            9999999999999999


Q ss_pred             HHHhhhcCCCCCCCCchHHHHHHHHHhcCCCCcccccccchhhHHH----------------------------------
Q psy1644         420 TIVKFQQVPTPAGQTSPLLQYFGILLDHGKLNKHESLELCRPVLAQ----------------------------------  465 (923)
Q Consensus       420 TI~rFK~vp~~pGq~sPLL~YF~~LL~~g~LN~~ESlEL~rpVL~Q----------------------------------  465 (923)
                      ||+|||++|++|||+||||+||++||++|+||++||+||+||||+|                                  
T Consensus       397 ti~rfk~~~~~pgq~~pll~YF~~ll~~g~Ln~~eSlEl~r~vl~q~r~~lle~Wl~e~KL~~SEeLGDlv~~~d~~lAl  476 (1630)
T 1xi4_A          397 TIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLAL  476 (1630)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchHHHHHHHHHhCCccccHHHHHHHHhcChHHHH
Confidence            9999999999999999999999999999999999999999999999                                  


Q ss_pred             -----------HHHHHHHhcChhHHHHHHHHhCCCccHHHHHHHHHhcCCchhhHHHHhhhcCCCCCcCccc--------
Q psy1644         466 -----------VIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVGFAQMLVQDDEPLADINQ--------  526 (923)
Q Consensus       466 -----------Vi~clae~Gqfdkiv~Y~~~vgytpDy~~LL~~i~~~nP~~a~efA~~L~~~~~pl~di~~--------  526 (923)
                                 ||+||||+|||+||++||+++||||||++||++++|+||++|++||++|+++++|++|+++        
T Consensus       477 ~iY~~a~~~~Kvi~~l~~~gq~~ki~~Y~~~~~~~pDy~~ll~~~~~~~P~~~~~fa~~L~~~~~p~~d~~~ivd~f~~~  556 (1630)
T 1xi4_A          477 SVYLRANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDEEPLADITQIVDVFMEY  556 (1630)
T ss_pred             HHHHhcCCcHHHHHHHHHhCCHHHHHHHHhccCCCccHHHHHHHHhhcChHHHHHHHHHHhcCCCCccCHHHHHHHHHhc
Confidence                       9999999999999999999999999999999999999999999999999999889999987        


Q ss_pred             --------------------------------------------------------------------------------
Q psy1644         527 --------------------------------------------------------------------------------  526 (923)
Q Consensus       527 --------------------------------------------------------------------------------  526 (923)
                                                                                                      
T Consensus       557 ~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~di  636 (1630)
T 1xi4_A          557 NLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDI  636 (1630)
T ss_pred             CcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHH
Confidence                                                                                            


Q ss_pred             ----------------------------------------------------------------------cchhhhhhhc
Q psy1644         527 ----------------------------------------------------------------------SYEGLFYFLG  536 (923)
Q Consensus       527 ----------------------------------------------------------------------~~egLyy~Lg  536 (923)
                                                                                            ++||||||||
T Consensus       637 kR~~~~~~~~~~~~l~~~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~  716 (1630)
T 1xi4_A          637 KRAVVHTHLLNPEWLVNYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLG  716 (1630)
T ss_pred             HHHhhccCcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHH
Confidence                                                                                  5899999999


Q ss_pred             ccccccCCcchhhHHHHHHHhcCChhhhHHhhhcCCccChHHHHhHHhhccCCCCCceEEeeccccchhHHHHHHHhcCc
Q psy1644         537 SIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNL  616 (923)
Q Consensus       537 sivn~s~d~dVhfKYIeAA~k~gq~~EvERicresn~YdpekvKnfLKeakL~d~~PLI~VCDrf~fV~dLv~YLY~n~~  616 (923)
                      ||||+|+||||||||||||+|+||++|||||||||||||||||||||||||||||+||||||||||||||||+|||+|++
T Consensus       717 siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~  796 (1630)
T 1xi4_A          717 SIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNL  796 (1630)
T ss_pred             hhccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hheehhhhhccCccccceeee-eccccCCHHHhhhhhccCcchhhhHHhhhccccccchhhHHHHH-hhcchhHHHHHHH
Q psy1644         617 QKYIEIYVQKGRKHLLEKWLK-EEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDLVLYL-YRNNLQKYIEIYV  694 (923)
Q Consensus       617 ~k~IEvYvqkvNp~~tP~Vvg-LlD~dc~E~~Ik~LL~sv~~l~~~~~v~~~~~~~~pv~~Lv~ev-~RnrL~kll~p~L  694 (923)
                      +||||+|||||||++||+||| |||+|||||+||+||++|             +++||++|||+|| ||||| |||+|||
T Consensus       797 ~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v-------------~~~~~~~~lv~~~ekrnrL-kll~p~L  862 (1630)
T 1xi4_A          797 QKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVV-------------RGQFSTDELVAEVEKRNRL-KLLLPWL  862 (1630)
T ss_pred             hhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHh-------------ccCCCHHHHHHHHHHHHHH-HHHHHHH
Confidence            999999999999999999999 999999999999999997             8999999999999 69999 9999999


Q ss_pred             HHHHHhhcccchhhhHHHHhH---hcCccceee
Q psy1644         695 QKIRIKIKQSRFVHDLVLYLY---RNNLQKYIE  724 (923)
Q Consensus       695 E~~~~~g~q~~~v~nalakiy---~~~~~~~~~  724 (923)
                      |+|++||+|||++||||||||   +++|++|+.
T Consensus       863 E~~~~~g~~~~~~hnalakiyid~n~npe~fL~  895 (1630)
T 1xi4_A          863 EARIHEGCEEPATHNALAKIYIDSNNNPERFLR  895 (1630)
T ss_pred             HHHHhCCCCCHHHHHHHHHHHhccCCCHHHHhh
Confidence            999999999999999999999   666888764
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 Back     alignment and structure
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} Back     alignment and structure
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Back     alignment and structure
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 923
d1utca2327 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal d 1e-101
d1utca2327 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal d 4e-66
d1utca2327 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal d 9e-32
d1utca2327 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal d 8e-31
d1bpoa1157 a.118.1.4 (A:331-487) Clathrin heavy-chain linker 2e-29
d1bpoa1157 a.118.1.4 (A:331-487) Clathrin heavy-chain linker 6e-22
d1bpoa1157 a.118.1.4 (A:331-487) Clathrin heavy-chain linker 4e-19
d1b89a_336 a.118.1.3 (A:) Clathrin heavy chain proximal leg s 1e-18
d1b89a_ 336 a.118.1.3 (A:) Clathrin heavy chain proximal leg s 1e-07
d1utca126 a.118.1.4 (A:331-355) Clathrin heavy-chain linker 4e-09
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 327 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  317 bits (813), Expect = e-101
 Identities = 148/196 (75%), Positives = 161/196 (82%), Gaps = 10/196 (5%)

Query: 205 NRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISAD 264
                L N+GIN  ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISAD
Sbjct: 7   QEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISAD 66

Query: 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTL 324
           SAIMNPASKVIALK          A KTLQIFNIEMKSKMKAH MTDDV FWKWIS NT+
Sbjct: 67  SAIMNPASKVIALK----------AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV 116

Query: 325 ALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVG 384
           ALVT+ +VYHWSMEG+S P KMFDRHS+L GCQIINYRTD KQ WLLL GISA  NRVVG
Sbjct: 117 ALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG 176

Query: 385 AMQLYSVERKCSQPIE 400
           AMQLYSV+RK SQPIE
Sbjct: 177 AMQLYSVDRKVSQPIE 192
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 327 Back     information, alignment and structure
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 327 Back     information, alignment and structure
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 327 Back     information, alignment and structure
>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 Back     information, alignment and structure
>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 Back     information, alignment and structure
>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Length = 336 Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Length = 336 Back     information, alignment and structure
>d1utca1 a.118.1.4 (A:331-355) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 26 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query923
d1utca2327 Clathrin heavy-chain terminal domain {Rat (Rattus 100.0
d1utca2327 Clathrin heavy-chain terminal domain {Rat (Rattus 100.0
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 99.94
d1bpoa1157 Clathrin heavy-chain linker domain {Rat (Rattus no 99.88
d1bpoa1157 Clathrin heavy-chain linker domain {Rat (Rattus no 99.87
d1utca126 Clathrin heavy-chain linker domain {Rat (Rattus no 97.88
d1b89a_ 336 Clathrin heavy chain proximal leg segment {Cow (Bo 97.34
d1tbga_340 beta1-subunit of the signal-transducing G protein 97.09
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 96.86
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 96.71
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 96.61
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 96.44
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 96.36
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 96.15
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 95.43
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 95.19
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 94.83
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 94.75
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 94.63
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 94.26
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 93.6
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 92.81
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 92.68
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 92.29
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 91.51
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 90.09
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 89.71
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 89.7
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 88.2
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 87.99
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 87.65
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 86.45
d1tbga_340 beta1-subunit of the signal-transducing G protein 85.71
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 84.85
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 84.44
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.4e-103  Score=837.20  Aligned_cols=194  Identities=77%  Similarity=1.154  Sum_probs=190.7

Q ss_pred             eeeeccccccccCCcccccceeeecceEEEEEeccCCCceEEEEECCCCCCCcccccCccccccCCCccEEEEeccCCCC
Q psy1644         205 NRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIALKGKAGND  284 (923)
Q Consensus       205 ~e~~~Lt~lGI~~~si~F~~lTmESDkyICVRE~~~~~~qVvIVDL~n~~~v~Rrpi~ADSAIMnP~~~IIALra~~~~~  284 (923)
                      +|+++|+++||+|++|+|+++||||||||||||+.++++||+||||.|+++|+||||+||||||||+++|||||      
T Consensus         7 ~E~~~L~~~Gi~~~~i~f~~~T~ESDkyicVRe~~~~~~~VvIidl~n~~~~~Rrpi~AdsAIMhP~~~IiALr------   80 (327)
T d1utca2           7 QEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALK------   80 (327)
T ss_dssp             EEEEEGGGGTCCGGGCSTTTEECSSSSEEEEEEEETTEEEEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEE------
T ss_pred             EeeeehhhcCCCccccccccEEEecCCEEEEEeccCCCceEEEEECCCCCcceecccchhhhhcCCCCcEEEEe------
Confidence            49999999999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             CCCCCCCeEEEEecccccccccccCCCceeEEEeccCCeEEEEecCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeC
Q psy1644         285 NNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTD  364 (923)
Q Consensus       285 n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWis~~tLglVT~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d  364 (923)
                          +|++|||||||+|+|||+|+|+|+|+||||||+++|||||+++||||+|+|+++|+||||||++|+|||||||++|
T Consensus        81 ----ag~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d  156 (327)
T d1utca2          81 ----AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD  156 (327)
T ss_dssp             ----ETTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEEC
T ss_pred             ----cCCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEEC
Confidence                6899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEeeecccccccceeeecccccccccccccceeEEec
Q psy1644         365 PKQTWLLLIGISAVSNRVVGAMQLYSVERKCSQPIEEKKSRVAA  408 (923)
Q Consensus       365 ~~~kW~~LvGI~~~~~~i~G~mQLYS~er~~SQ~iEGk~AkvAA  408 (923)
                      +++|||+|+||++++++|+|+|||||+||++||+|||++|.+|-
T Consensus       157 ~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~  200 (327)
T d1utca2         157 AKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQ  200 (327)
T ss_dssp             TTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEE
T ss_pred             CCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEE
Confidence            99999999999999999999999999999999999999988874
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1utca1 a.118.1.4 (A:331-355) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure