Psyllid ID: psy16474

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
MSKSVELVGGHGRNPFDESEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQVRRLGNFVQDSYTTITLCHASRDVIKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR
Secondary Structure (PSIPRED)
cccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHccccccccccccHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccEEcEHHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccHHHHHHHccccccHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHcccccccccccHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHc
Coil and Loop (DISEMBL)
msksvelvgghgrnpfdeseeedTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNEtlpqlnslilvnpmkpmfcqPLEEHLALIGCKIAFPIELCTRALCQVRrlgnfvqdsytTITLCHASRDVIKQHEEALLHLNEtlpqlnslilvnpmkpmfcqPLEEHLALIGCKIAFPIELCTRALCQIgmdeeglfrvtggasKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRelpeplltYALYEDWLAAAR
Flexible Loop (DISEMBL)
msksvelvgghgrnpfdeseeedTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQVRRLGNFVQDSYTTITLCHASRDVIKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR
Low Complexity Region (SEG)
MSKSVELVGGHGRNPFDESEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQVRRLGNFVQDSYTTITLCHASRDVIKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR
Disordered region (IsUnstruct)
************************LATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQVRRLGNFVQDSYTTITLCHASRDVIKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLA***
Disordered Region (DISOPRED)
*****************ESEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQL*******************************IELCT***CQ*******************************************************CQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR
Disordered Region (DISEMBL)
MSKSVELVGGHGR**********TLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQVRRLGNFVQDSYTTITLCHASRDVIKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR
Disordered Region (DISPRO)
************RNPFDESEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQVRRLGNFVQDSYTTITLCHASRDVIKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKSVELVGGHGRNPFDESEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQVRRLGNFVQDSYTTITLCHASRDVIKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	264	2.2.26 [Sep-21-2011]
Q17R89	818	Rho GTPase-activating pro	yes	N/A	0.469	0.151	0.496	5e-27
Q5SSM3	814	Rho GTPase-activating pro	yes	N/A	0.469	0.152	0.496	7e-27
Q68EM7	881	Rho GTPase-activating pro	no	N/A	0.515	0.154	0.478	1e-26
Q99N37	858	Rho GTPase-activating pro	no	N/A	0.515	0.158	0.471	1e-26
Q3UIA2	846	Rho GTPase-activating pro	no	N/A	0.515	0.160	0.471	2e-26
Q9VDS5	740	Rho GTPase-activating pro	yes	N/A	0.477	0.170	0.437	1e-20
Q9Y3L3	701	SH3 domain-binding protei	no	N/A	0.344	0.129	0.51	2e-19
P55194	601	SH3 domain-binding protei	no	N/A	0.462	0.202	0.411	2e-18
Q8N264	748	Rho GTPase-activating pro	no	N/A	0.382	0.135	0.415	2e-12
Q5U2Z7	748	Rho GTPase-activating pro	no	N/A	0.378	0.133	0.419	4e-12

>sp|Q17R89|RHG44_HUMAN Rho GTPase-activating protein 44 OS=Homo sapiens GN=ARHGAP44 PE=1 SV=1

 Score =  121 bits (304), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 64/129 (49%), Positives = 82/129 (63%), Gaps = 5/129 (3%)

Query: 137 HEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMD 196
           H ++L  L   LPQ+ +       KP F +PLEEHL + G +IAFPIE C   L + GM 
Sbjct: 226 HRKSLTLLQAVLPQIKAQQEAWVEKPSFGKPLEEHLTISGREIAFPIEACVTMLLECGMQ 285

Query: 197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY--DAHVLAGVLKLYLRELPEPLLTYA 254
           EEGLFRV   ASK+K+LK  LD   +   D  EY  D H +AG LK YLRELPEPL+T+ 
Sbjct: 286 EEGLFRVAPSASKLKKLKAALDCCVV---DVQEYSADPHAIAGALKSYLRELPEPLMTFE 342

Query: 255 LYEDWLAAA 263
           LY++W+ A+
Sbjct: 343 LYDEWIQAS 351

GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state. Acts as a GTPase activitor in vitro for CDC42 and RAC1.
Homo sapiens (taxid: 9606)

>sp|Q5SSM3|RHG44_MOUSE Rho GTPase-activating protein 44 OS=Mus musculus GN=Arhgap44 PE=2 SV=1

 Score =  120 bits (302), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/129 (49%), Positives = 82/129 (63%), Gaps = 5/129 (3%)

Query: 137 HEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMD 196
           H ++L  L   LPQ+ +       KP F +PLEEHL + G +IAFPIE C   L + GM 
Sbjct: 226 HRKSLTLLQAVLPQIKAQQEAWVEKPSFGKPLEEHLMISGREIAFPIEACVTMLLECGMQ 285

Query: 197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY--DAHVLAGVLKLYLRELPEPLLTYA 254
           EEGLFRV   ASK+K+LK  LD   +   D  EY  D H +AG LK YLRELPEPL+T+ 
Sbjct: 286 EEGLFRVAPSASKLKKLKAALDCCVV---DVQEYSADPHAIAGALKSYLRELPEPLMTFE 342

Query: 255 LYEDWLAAA 263
           LY++W+ A+
Sbjct: 343 LYDEWIQAS 351

GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state. Acts as a GTPase activitor in vitro for CDC42 and RAC1.

Mus musculus (taxid: 10090)

>sp|Q68EM7|RHG17_HUMAN Rho GTPase-activating protein 17 OS=Homo sapiens GN=ARHGAP17 PE=1 SV=1

 Score =  120 bits (300), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/140 (47%), Positives = 82/140 (58%), Gaps = 4/140 (2%)

Query: 124 ITLCHASRDVIKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPI 183
           +TL  A  D    H +AL  L +TLP++ +       KP F  PLEEHL   G +IA PI
Sbjct: 213 VTLLEAQADY---HRKALAVLEKTLPEMRAHQDKWAEKPAFGTPLEEHLKRSGREIALPI 269

Query: 184 ELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYL 243
           E C   L + GM EEGLFR+  GASK+K+LK  LD       D    D H +AG LK YL
Sbjct: 270 EACVMLLLETGMKEEGLFRIGAGASKLKKLKAALDCSTSHL-DEFYSDPHAVAGALKSYL 328

Query: 244 RELPEPLLTYALYEDWLAAA 263
           RELPEPL+T+ LYE+W   A
Sbjct: 329 RELPEPLMTFNLYEEWTQVA 348

Rho GTPase-activating protein involved in the maintenance of tight junction by regulating the activity of CDC42, thereby playing a central role in apical polarity of epithelial cells. Specifically acts as a GTPase activator for the CDC42 GTPase by converting it to an inactive GDP-bound state. The complex formed with AMOT acts by regulating the uptake of polarity proteins at tight junctions, possibly by deciding whether tight junction transmembrane proteins are recycled back to the plasma membrane or sent elsewhere. Participates in the Ca(2+)-dependent regulation of exocytosis, possibly by catalyzing GTPase activity of Rho family proteins and by inducing the reorganization of the cortical actin filaments. Acts as a GTPase activitor in vitro for RAC1.

Homo sapiens (taxid: 9606)

>sp|Q99N37|RHG17_RAT Rho GTPase-activating protein 17 OS=Rattus norvegicus GN=Arhgap17 PE=1 SV=1

 Score =  120 bits (300), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/140 (47%), Positives = 82/140 (58%), Gaps = 4/140 (2%)

Query: 124 ITLCHASRDVIKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPI 183
           +TL  A  D    H +AL  L + LP++ +       KP F  PLEEHL   G +IA PI
Sbjct: 213 VTLLEAQADY---HRKALAVLEKALPEMRAHQDKWAEKPAFGTPLEEHLKRSGREIALPI 269

Query: 184 ELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYL 243
           E C   L + GM EEGLFR+  GASK+K+LK  LD       D    D H +AG LK YL
Sbjct: 270 EACVMLLLETGMKEEGLFRIGAGASKLKKLKAALDCSTSHL-DEFYSDPHAVAGALKSYL 328

Query: 244 RELPEPLLTYALYEDWLAAA 263
           RELPEPL+T++LYE+W   A
Sbjct: 329 RELPEPLMTFSLYEEWTQVA 348

Rho GTPase-activating protein involved in the maintenance of tight junction by regulating the activity of CDC42, thereby playing a central role in apical polarity of epithelial cells. Specifically acts as a GTPase activator for the CDC42 GTPase by converting it to an inactive GDP-bound state. The complex formed with AMOT acts by regulating the uptake of polarity proteins at tight junctions, possibly by deciding whether tight junction transmembrane proteins are recycled back to the plasma membrane or sent elsewhere (By similarity). Participates in the Ca(2+)-dependent regulation of exocytosis, possibly by catalyzing GTPase activity of Rho family proteins and by inducing the reorganization of the cortical actin filaments. Acts as a GTPase activitor in vitro for RAC1.

Rattus norvegicus (taxid: 10116)

>sp|Q3UIA2|RHG17_MOUSE Rho GTPase-activating protein 17 OS=Mus musculus GN=Arhgap17 PE=1 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/140 (47%), Positives = 82/140 (58%), Gaps = 4/140 (2%)

Query: 124 ITLCHASRDVIKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPI 183
           +TL  A  D    H +AL  L + LP++ +       KP F  PLEEHL   G +IA PI
Sbjct: 213 VTLLEAQADY---HRKALAVLEKALPEMRAHQDKWAEKPAFGTPLEEHLKRSGREIALPI 269

Query: 184 ELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYL 243
           E C   L + GM EEGLFR+  GASK+K+LK  LD       D    D H +AG LK YL
Sbjct: 270 EACVMLLLETGMKEEGLFRIGAGASKLKKLKAALDCSTSHL-DEFYSDPHAVAGALKSYL 328

Query: 244 RELPEPLLTYALYEDWLAAA 263
           RELPEPL+T++LYE+W   A
Sbjct: 329 RELPEPLMTFSLYEEWTQVA 348

Rho GTPase-activating protein involved in the maintenance of tight junction by regulating the activity of CDC42, thereby playing a central role in apical polarity of epithelial cells. Specifically acts as a GTPase activator for the CDC42 GTPase by converting it to an inactive GDP-bound state. The complex formed with AMOT acts by regulating the uptake of polarity proteins at tight junctions, possibly by deciding whether tight junction transmembrane proteins are recycled back to the plasma membrane or sent elsewhere. Participates in the Ca(2+)-dependent regulation of exocytosis, possibly by catalyzing GTPase activity of Rho family proteins and by inducing the reorganization of the cortical actin filaments. Acts as a GTPase activitor in vitro for RAC1.

Mus musculus (taxid: 10090)

>sp|Q9VDS5|RG92B_DROME Rho GTPase-activating protein 92B OS=Drosophila melanogaster GN=RhoGAP92B PE=1 SV=1

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/128 (43%), Positives = 81/128 (63%), Gaps = 2/128 (1%)

Query: 137 HEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMD 196
           HE AL H+N +L ++   I     K  F   L+EHL     +I++ +ELC   L + G++
Sbjct: 223 HERALQHVNASLARIQDTIQ-GTEKSRFGTSLKEHLTSTNREISYIVELCCCCLLEHGLE 281

Query: 197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY-DAHVLAGVLKLYLRELPEPLLTYAL 255
           EEGL RV   ++K++R+K  L+A  +K    L+Y D HV+  +LKLYLRELPEPLLTY L
Sbjct: 282 EEGLLRVGCASTKLRRMKHALEAQHVKTPLPLDYQDPHVIGSILKLYLRELPEPLLTYNL 341

Query: 256 YEDWLAAA 263
           Y+D++  A
Sbjct: 342 YKDFIRIA 349

GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state.

Drosophila melanogaster (taxid: 7227)

>sp|Q9Y3L3|3BP1_HUMAN SH3 domain-binding protein 1 OS=Homo sapiens GN=SH3BP1 PE=1 SV=3

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/100 (51%), Positives = 64/100 (64%), Gaps = 9/100 (9%)

Query: 168 LEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCL--DAHCIKFE 225
           L  HL  +G +IA PIE C   L   GM EEGLFR+  GAS +KRLK  +  D H ++  
Sbjct: 278 LATHLQELGREIALPIEACVMMLLSEGMKEEGLFRLAAGASVLKRLKQTMASDPHSLE-- 335

Query: 226 DALEY--DAHVLAGVLKLYLRELPEPLLTYALYEDWLAAA 263
              E+  D H +AG LK YLRELPEPL+T+ LY+DW+ AA
Sbjct: 336 ---EFCSDPHAVAGALKSYLRELPEPLMTFDLYDDWMRAA 372

Binds differentially to the SH3 domains of certain proteins of signal transduction pathways. This protein binds preferentially to the ABL1 proto-oncogene, SRC and GRB2. Shows GAP activity for Rac-related proteins but not for Rho- or Ras-related proteins. It inhibits PDGF-induced membrane ruffling mediated by Rac.

Homo sapiens (taxid: 9606)

>sp|P55194|3BP1_MOUSE SH3 domain-binding protein 1 OS=Mus musculus GN=Sh3bp1 PE=1 SV=2

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 77/141 (54%), Gaps = 19/141 (13%)

Query: 137 HEEALLHLNETLPQL---------NSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCT 187
           H ++L  L+  L +L         + L    P   ++   L  HL  +G  IA PIE C 
Sbjct: 158 HRKSLTSLDTALAELRDNHSQADHSPLTTAAPFSRVYGVSLRTHLQDLGRDIALPIEACV 217

Query: 188 RALCQIGM-DEEGLFRVTGGASKVKRLKTCL--DAHCIKFEDALEY--DAHVLAGVLKLY 242
             L   GM +EEGLFR+  GAS +KRLK  +  D H ++     E+  D H +AG LK Y
Sbjct: 218 LLLLSEGMQEEEGLFRLAAGASVLKRLKQTMASDPHSLE-----EFCSDPHAVAGALKSY 272

Query: 243 LRELPEPLLTYALYEDWLAAA 263
           LRELPEPL+T  LY+DW+ AA
Sbjct: 273 LRELPEPLMTSDLYDDWMRAA 293

Binds differentially to the SH3 domains of certain proteins of signal transduction pathways. This protein binds preferentially to the ABL1 proto-oncogene, SRC and GRB2. Shows GAP activity for Rac-related proteins but not for Rho- or Ras-related proteins. It inhibits PDGF-induced membrane ruffling mediated by Rac.

Mus musculus (taxid: 10090)

>sp|Q8N264|RHG24_HUMAN Rho GTPase-activating protein 24 OS=Homo sapiens GN=ARHGAP24 PE=1 SV=2

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 63/106 (59%), Gaps = 5/106 (4%)

Query: 163 MFCQPLEEHL---ALIGCKIA-FPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLD 218
           +F Q LE+ +      G ++A   +E C   + Q G+ EEGLFR+ G A+ VK L+   D
Sbjct: 132 IFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFD 191

Query: 219 AHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
                  D+   D H +A +LKLYLRELPEP++ YA YED+L+ A+
Sbjct: 192 CGEKPSFDS-NTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAK 236

Rho GTPase-activating protein involved in cell polarity, cell morphology and cytoskeletal organization. Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state. Controls actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity. Able to suppress RAC1 and CDC42 activity in vitro. Overexpression induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. Isoform 2 is a vascular cell-specific GAP involved in modulation of angiogenesis.

Homo sapiens (taxid: 9606)

>sp|Q5U2Z7|RHG24_RAT Rho GTPase-activating protein 24 OS=Rattus norvegicus GN=Arhgap24 PE=2 SV=2

 Score = 72.0 bits (175), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 5/105 (4%)

Query: 163 MFCQPLEEHL---ALIGCKIA-FPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLD 218
           +F Q LE+ +      G ++A   +E C   + Q G+ EEGLFR+ G A+ VK L+   D
Sbjct: 131 IFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFD 190

Query: 219 AHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAA 263
                  D+   D H +A +LKLYLRELPEP++ YA YED+L+ A
Sbjct: 191 CGEKPSFDS-NTDVHTVASLLKLYLRELPEPVVPYAKYEDFLSCA 234

Rho GTPase-activating protein involved in cell polarity, cell morphology and cytoskeletal organization. Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state. Controls actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity. Able to suppress RAC1 and CDC42 activity in vitro. Overexpression induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. Isoform 2 is a vascular cell-specific GAP involved in modulation of angiogenesis.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
193613348	750	PREDICTED: rho GTPase-activating protein	0.484	0.170	0.558	1e-34
328793639	854	PREDICTED: rho GTPase-activating protein	0.484	0.149	0.581	4e-34
340721493	854	PREDICTED: rho GTPase-activating protein	0.484	0.149	0.573	6e-34
350407047	854	PREDICTED: rho GTPase-activating protein	0.484	0.149	0.573	6e-34
380028921	775	PREDICTED: uncharacterized protein LOC10	0.484	0.165	0.581	1e-33
307174125	886	Rho GTPase-activating protein 17 [Campon	0.484	0.144	0.573	1e-33
383857901	845	PREDICTED: rho GTPase-activating protein	0.484	0.151	0.573	1e-33
242009254	828	conserved hypothetical protein [Pediculu	0.492	0.157	0.564	1e-33
307195670	900	Rho GTPase-activating protein 17 [Harpeg	0.484	0.142	0.573	2e-33
332031341	898	Rho GTPase-activating protein 17 [Acromy	0.484	0.142	0.558	4e-32

>gi|193613348|ref|XP_001950332.1| PREDICTED: rho GTPase-activating protein 17-like [Acyrthosiphon pisum]

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/129 (55%), Positives = 100/129 (77%), Gaps = 1/129 (0%)

Query: 137 HEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMD 196
           H+ AL  LNE +P+L ++I  NP KP+F Q LE+HL +   +IA+PIELC  AL ++G++
Sbjct: 226 HQTALAVLNEIVPELETVIDSNPSKPVFGQKLEDHLRVTKRRIAYPIELCICALLEMGVE 285

Query: 197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY-DAHVLAGVLKLYLRELPEPLLTYAL 255
           EEGLFR+  GASKV+ +K  LD++C+  E A+EY D H++AGVLK YLR+LPEPLLT+ L
Sbjct: 286 EEGLFRIAAGASKVRCMKLRLDSNCLDLESAVEYRDPHIIAGVLKSYLRQLPEPLLTHHL 345

Query: 256 YEDWLAAAR 264
           YE+W+AAA+
Sbjct: 346 YEEWMAAAK 354

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793639|ref|XP_395006.4| PREDICTED: rho GTPase-activating protein 17-like [Apis mellifera]

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 75/129 (58%), Positives = 92/129 (71%), Gaps = 1/129 (0%)

Query: 137 HEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMD 196
           HE AL  L + +P L S I  N MKP++  PLEEHL +   KIA PI+LC  AL ++GM+
Sbjct: 221 HESALHCLEDLIPGLESYINDNEMKPVYGYPLEEHLRVTNRKIALPIQLCVSALLRLGME 280

Query: 197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY-DAHVLAGVLKLYLRELPEPLLTYAL 255
           EEGLFR+ G ASK +R+K  LDA C+    ALEY D HV+AG LK YLRELPEPLLTY L
Sbjct: 281 EEGLFRIAGAASKSRRIKLSLDACCLTLPTALEYKDPHVIAGALKSYLRELPEPLLTYKL 340

Query: 256 YEDWLAAAR 264
           Y +W+AAA+
Sbjct: 341 YPEWMAAAK 349

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721493|ref|XP_003399154.1| PREDICTED: rho GTPase-activating protein 17-like [Bombus terrestris]

 Score =  150 bits (379), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 74/129 (57%), Positives = 92/129 (71%), Gaps = 1/129 (0%)

Query: 137 HEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMD 196
           HE AL  L + +P L S I  N MKP++  PLEEHL +   KIA P++LC  AL ++GM+
Sbjct: 221 HESALHCLEDLIPGLESYINDNEMKPVYGYPLEEHLRVTNRKIALPVQLCVSALLRLGME 280

Query: 197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY-DAHVLAGVLKLYLRELPEPLLTYAL 255
           EEGLFR+ G ASK +R+K  LDA C+    ALEY D HV+AG LK YLRELPEPLLTY L
Sbjct: 281 EEGLFRIAGAASKSRRIKLSLDACCLTLPTALEYKDPHVIAGALKSYLRELPEPLLTYKL 340

Query: 256 YEDWLAAAR 264
           Y +W+AAA+
Sbjct: 341 YPEWMAAAK 349

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407047|ref|XP_003487967.1| PREDICTED: rho GTPase-activating protein 17-like [Bombus impatiens]

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 74/129 (57%), Positives = 92/129 (71%), Gaps = 1/129 (0%)

Query: 137 HEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMD 196
           HE AL  L + +P L S I  N MKP++  PLEEHL +   KIA P++LC  AL ++GM+
Sbjct: 221 HESALHCLEDLIPGLESYINDNEMKPVYGYPLEEHLRVTNRKIALPVQLCVSALLRLGME 280

Query: 197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY-DAHVLAGVLKLYLRELPEPLLTYAL 255
           EEGLFR+ G ASK +R+K  LDA C+    ALEY D HV+AG LK YLRELPEPLLTY L
Sbjct: 281 EEGLFRIAGAASKSRRIKLSLDACCLTLPTALEYKDPHVIAGALKSYLRELPEPLLTYKL 340

Query: 256 YEDWLAAAR 264
           Y +W+AAA+
Sbjct: 341 YPEWMAAAK 349

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028921|ref|XP_003698132.1| PREDICTED: uncharacterized protein LOC100871079 [Apis florea]

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/129 (58%), Positives = 92/129 (71%), Gaps = 1/129 (0%)

Query: 137 HEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMD 196
           HE AL  L + +P L S I  N MKP++  PLEEHL +   KIA PI+LC  AL ++GM+
Sbjct: 141 HESALHCLEDLIPGLESYINDNEMKPVYGYPLEEHLRVTNRKIALPIQLCVSALLRLGME 200

Query: 197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY-DAHVLAGVLKLYLRELPEPLLTYAL 255
           EEGLFR+ G ASK +R+K  LDA C+    ALEY D HV+AG LK YLRELPEPLLTY L
Sbjct: 201 EEGLFRIAGAASKSRRIKLSLDACCLTLLTALEYKDPHVIAGALKSYLRELPEPLLTYKL 260

Query: 256 YEDWLAAAR 264
           Y +W+AAA+
Sbjct: 261 YPEWMAAAK 269

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174125|gb|EFN64783.1| Rho GTPase-activating protein 17 [Camponotus floridanus]

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/129 (57%), Positives = 92/129 (71%), Gaps = 1/129 (0%)

Query: 137 HEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMD 196
           HE AL  L + +P L S I  N MKP++  PLEEHL +   KIA PI+LC  AL ++G++
Sbjct: 221 HESALHCLEDLIPGLESYINDNEMKPVYGYPLEEHLRVTNRKIALPIQLCVSALLRLGIE 280

Query: 197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY-DAHVLAGVLKLYLRELPEPLLTYAL 255
           EEGLFR+ G ASK +R+K  LDA C+    ALEY D HV+AG LK YLRELPEPLLTY L
Sbjct: 281 EEGLFRIAGAASKSRRIKLSLDACCLTLATALEYKDPHVIAGALKSYLRELPEPLLTYKL 340

Query: 256 YEDWLAAAR 264
           Y +W+AAA+
Sbjct: 341 YHEWMAAAK 349

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857901|ref|XP_003704442.1| PREDICTED: rho GTPase-activating protein 17-like [Megachile rotundata]

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 1/129 (0%)

Query: 137 HEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMD 196
           HE AL  L + +P L   I  N MKP++  PLEEHL +   KIA PI+LC  AL ++GM+
Sbjct: 221 HESALHCLEDLIPGLERYINDNQMKPVYGYPLEEHLRVTNRKIALPIQLCVSALLRLGME 280

Query: 197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY-DAHVLAGVLKLYLRELPEPLLTYAL 255
           EEGLFR+ G ASK +R+K  LDA C+    ALEY D HV+AG LK YLRELPEPLLTY L
Sbjct: 281 EEGLFRIAGAASKSRRIKLSLDACCLTLPTALEYKDPHVIAGALKSYLRELPEPLLTYKL 340

Query: 256 YEDWLAAAR 264
           Y +W+AAA+
Sbjct: 341 YSEWMAAAK 349

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242009254|ref|XP_002425405.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212509214|gb|EEB12667.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/131 (56%), Positives = 96/131 (73%), Gaps = 1/131 (0%)

Query: 135 KQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIG 194
           + HE AL  L++ +P+L S I  +  KP++   LEEHL + G KIAFPIELC  AL ++G
Sbjct: 156 RYHEYALGILDKLIPELESDICSSKTKPVYGVDLEEHLQVTGRKIAFPIELCVCALLELG 215

Query: 195 MDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY-DAHVLAGVLKLYLRELPEPLLTY 253
           M+EEGLFR+ GGASK+KR+K   DA C+    AL Y D HV+AG LK YLRELPEPLLT+
Sbjct: 216 MEEEGLFRLAGGASKLKRMKLSFDAGCMTLATALTYRDPHVIAGALKSYLRELPEPLLTH 275

Query: 254 ALYEDWLAAAR 264
           +LY++WL AA+
Sbjct: 276 SLYDEWLNAAK 286

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195670|gb|EFN77512.1| Rho GTPase-activating protein 17 [Harpegnathos saltator]

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 1/129 (0%)

Query: 137 HEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMD 196
           HE AL  L + +P L S I  N MKP++  PLEEHL +   KIA PI+LC   L ++GM+
Sbjct: 224 HESALHCLEDLIPGLESYINDNEMKPVYGYPLEEHLRVTNRKIALPIQLCVSVLLRLGME 283

Query: 197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY-DAHVLAGVLKLYLRELPEPLLTYAL 255
           EEGLFR+ G ASK +R+K  LDA C+    ALEY D HV+AG LK YLRELPEPLLTY L
Sbjct: 284 EEGLFRIAGAASKSRRIKLSLDACCLTLPRALEYKDPHVIAGALKSYLRELPEPLLTYKL 343

Query: 256 YEDWLAAAR 264
           Y +W+AAA+
Sbjct: 344 YPEWMAAAK 352

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031341|gb|EGI70854.1| Rho GTPase-activating protein 17 [Acromyrmex echinatior]

 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/129 (55%), Positives = 90/129 (69%), Gaps = 1/129 (0%)

Query: 137 HEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMD 196
           HE AL  L + +P L   I  N MKP++  PLEEHL +   KIA PI+LC  AL ++G++
Sbjct: 226 HESALHCLEDLIPGLECYINDNEMKPVYGYPLEEHLRVTNRKIALPIQLCVSALLRLGIE 285

Query: 197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY-DAHVLAGVLKLYLRELPEPLLTYAL 255
           EEGLFR+ G ASK +R+K  LDA C+    ALEY D HV+AG LK YLRELPEPLLTY L
Sbjct: 286 EEGLFRIAGAASKSRRIKLSLDACCLTLTTALEYKDPHVIAGALKSYLRELPEPLLTYKL 345

Query: 256 YEDWLAAAR 264
           Y +W+AA +
Sbjct: 346 YPEWMAAVK 354

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
UNIPROTKB|F1NYA5	704	ARHGAP44 "Uncharacterized prot	0.469	0.176	0.511	3.3e-27
UNIPROTKB|F5H6L3	591	ARHGAP44 "Rho GTPase-activatin	0.469	0.209	0.503	8.8e-27
UNIPROTKB|E1C2R7	859	ARHGAP17 "Uncharacterized prot	0.814	0.250	0.364	1.1e-26
UNIPROTKB|E1C8J2	875	ARHGAP17 "Uncharacterized prot	0.814	0.245	0.364	1.1e-26
UNIPROTKB|E7ERK8	774	ARHGAP44 "Rho GTPase-activatin	0.469	0.160	0.503	1.8e-26
UNIPROTKB|A6NCP5	812	ARHGAP44 "Rho GTPase-activatin	0.469	0.152	0.503	2e-26
UNIPROTKB|Q17R89	818	ARHGAP44 "Rho GTPase-activatin	0.469	0.151	0.503	2e-26
UNIPROTKB|F1LST2	791	RGD1305664 "Protein RGD1305664	0.469	0.156	0.503	2.4e-26
UNIPROTKB|F1LQX4	797	RGD1305664 "Protein RGD1305664	0.469	0.155	0.503	2.5e-26
MGI|MGI:2144423	814	Arhgap44 "Rho GTPase activatin	0.469	0.152	0.503	2.6e-26

UNIPROTKB|F1NYA5 ARHGAP44 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 314 (115.6 bits), Expect = 3.3e-27, P = 3.3e-27
 Identities = 66/129 (51%), Positives = 84/129 (65%)

Query:   137 HEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMD 196
             H ++L  L   LPQ+ +       KP F +PLEEHLA+ G +IAFP+E C   L + GM 
Sbjct:   234 HRKSLALLQSVLPQIKAQQEAWMEKPSFGKPLEEHLAVSGREIAFPVEACVTMLLECGMQ 293

Query:   197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY--DAHVLAGVLKLYLRELPEPLLTYA 254
             EEGLFRV   ASK+K+LK  LD  C+   D  EY  D H +AG LK YLRELPEPL+T+ 
Sbjct:   294 EEGLFRVAPSASKLKKLKAALDC-CVV--DVQEYSADPHAIAGALKSYLRELPEPLMTFE 350

Query:   255 LYEDWLAAA 263
             LYE+W+ A+
Sbjct:   351 LYEEWIQAS 359

GO:0005737 "cytoplasm" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F5H6L3 ARHGAP44 "Rho GTPase-activating protein 44" [Homo sapiens (taxid:9606)]

 Score = 308 (113.5 bits), Expect = 8.8e-27, P = 8.8e-27
 Identities = 65/129 (50%), Positives = 83/129 (64%)

Query:   137 HEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMD 196
             H ++L  L   LPQ+ +       KP F +PLEEHL + G +IAFPIE C   L + GM 
Sbjct:   226 HRKSLTLLQAVLPQIKAQQEAWVEKPSFGKPLEEHLTISGREIAFPIEACVTMLLECGMQ 285

Query:   197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY--DAHVLAGVLKLYLRELPEPLLTYA 254
             EEGLFRV   ASK+K+LK  LD  C+   D  EY  D H +AG LK YLRELPEPL+T+ 
Sbjct:   286 EEGLFRVAPSASKLKKLKAALDC-CVV--DVQEYSADPHAIAGALKSYLRELPEPLMTFE 342

Query:   255 LYEDWLAAA 263
             LY++W+ A+
Sbjct:   343 LYDEWIQAS 351

GO:0005737 "cytoplasm" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|E1C2R7 ARHGAP17 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 311 (114.5 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 85/233 (36%), Positives = 118/233 (50%)

Query:    39 IAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVN----PMKPMFCQPLEEHLALIGC 94
             + +V +  +  Q+KQ  + +L  +    + N     +     M P     L+E +   G 
Sbjct:   120 LTEVEIPNIQKQRKQLAKLVLDWDSARGRYNQAHKTSGTNFQMHPSKIDSLKEEMDEAGN 179

Query:    95 KIAFPIELCTRALCQVRRLGNFV--QDSYTT--ITLCHASRDVIKQHEEALLHLNETLPQ 150
             K+    E C   L     + NFV  +  Y    + L  A  D    H +AL  + + LP+
Sbjct:   180 KV----EQCKDQLAA--DMYNFVSKEGEYAKFFVMLLEAQADY---HRKALAVIEKVLPE 230

Query:   151 LNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKV 210
             + +       KP F  PLEEHL   G +IA PIE C   L + GM EEGLFR+  GASK+
Sbjct:   231 IQAHQDKWTEKPAFGTPLEEHLKRSGREIAIPIEACVMMLLETGMREEGLFRIAAGASKL 290

Query:   211 KRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAA 263
             K+LK  LD    + ++    D H +AG LK YLRELPEPL+TYALYE+W  AA
Sbjct:   291 KKLKAALDCSTSQLDEFYS-DPHAVAGALKSYLRELPEPLMTYALYEEWTQAA 342

GO:0005737 "cytoplasm" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|E1C8J2 ARHGAP17 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 311 (114.5 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 85/233 (36%), Positives = 118/233 (50%)

Query:    39 IAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVN----PMKPMFCQPLEEHLALIGC 94
             + +V +  +  Q+KQ  + +L  +    + N     +     M P     L+E +   G 
Sbjct:   120 LTEVEIPNIQKQRKQLAKLVLDWDSARGRYNQAHKTSGTNFQMHPSKIDSLKEEMDEAGN 179

Query:    95 KIAFPIELCTRALCQVRRLGNFV--QDSYTT--ITLCHASRDVIKQHEEALLHLNETLPQ 150
             K+    E C   L     + NFV  +  Y    + L  A  D    H +AL  + + LP+
Sbjct:   180 KV----EQCKDQLAA--DMYNFVSKEGEYAKFFVMLLEAQADY---HRKALAVIEKVLPE 230

Query:   151 LNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKV 210
             + +       KP F  PLEEHL   G +IA PIE C   L + GM EEGLFR+  GASK+
Sbjct:   231 IQAHQDKWTEKPAFGTPLEEHLKRSGREIAIPIEACVMMLLETGMREEGLFRIAAGASKL 290

Query:   211 KRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAA 263
             K+LK  LD    + ++    D H +AG LK YLRELPEPL+TYALYE+W  AA
Sbjct:   291 KKLKAALDCSTSQLDEFYS-DPHAVAGALKSYLRELPEPLMTYALYEEWTQAA 342

GO:0005737 "cytoplasm" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|E7ERK8 ARHGAP44 "Rho GTPase-activating protein 44" [Homo sapiens (taxid:9606)]

 Score = 308 (113.5 bits), Expect = 1.8e-26, P = 1.8e-26
 Identities = 65/129 (50%), Positives = 83/129 (64%)

Query:   137 HEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMD 196
             H ++L  L   LPQ+ +       KP F +PLEEHL + G +IAFPIE C   L + GM 
Sbjct:   226 HRKSLTLLQAVLPQIKAQQEAWVEKPSFGKPLEEHLTISGREIAFPIEACVTMLLECGMQ 285

Query:   197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY--DAHVLAGVLKLYLRELPEPLLTYA 254
             EEGLFRV   ASK+K+LK  LD  C+   D  EY  D H +AG LK YLRELPEPL+T+ 
Sbjct:   286 EEGLFRVAPSASKLKKLKAALDC-CVV--DVQEYSADPHAIAGALKSYLRELPEPLMTFE 342

Query:   255 LYEDWLAAA 263
             LY++W+ A+
Sbjct:   343 LYDEWIQAS 351

GO:0005737 "cytoplasm" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|A6NCP5 ARHGAP44 "Rho GTPase-activating protein 44" [Homo sapiens (taxid:9606)]

 Score = 308 (113.5 bits), Expect = 2.0e-26, P = 2.0e-26
 Identities = 65/129 (50%), Positives = 83/129 (64%)

Query:   137 HEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMD 196
             H ++L  L   LPQ+ +       KP F +PLEEHL + G +IAFPIE C   L + GM 
Sbjct:   226 HRKSLTLLQAVLPQIKAQQEAWVEKPSFGKPLEEHLTISGREIAFPIEACVTMLLECGMQ 285

Query:   197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY--DAHVLAGVLKLYLRELPEPLLTYA 254
             EEGLFRV   ASK+K+LK  LD  C+   D  EY  D H +AG LK YLRELPEPL+T+ 
Sbjct:   286 EEGLFRVAPSASKLKKLKAALDC-CVV--DVQEYSADPHAIAGALKSYLRELPEPLMTFE 342

Query:   255 LYEDWLAAA 263
             LY++W+ A+
Sbjct:   343 LYDEWIQAS 351

GO:0005737 "cytoplasm" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|Q17R89 ARHGAP44 "Rho GTPase-activating protein 44" [Homo sapiens (taxid:9606)]

 Score = 308 (113.5 bits), Expect = 2.0e-26, P = 2.0e-26
 Identities = 65/129 (50%), Positives = 83/129 (64%)

Query:   137 HEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMD 196
             H ++L  L   LPQ+ +       KP F +PLEEHL + G +IAFPIE C   L + GM 
Sbjct:   226 HRKSLTLLQAVLPQIKAQQEAWVEKPSFGKPLEEHLTISGREIAFPIEACVTMLLECGMQ 285

Query:   197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY--DAHVLAGVLKLYLRELPEPLLTYA 254
             EEGLFRV   ASK+K+LK  LD  C+   D  EY  D H +AG LK YLRELPEPL+T+ 
Sbjct:   286 EEGLFRVAPSASKLKKLKAALDC-CVV--DVQEYSADPHAIAGALKSYLRELPEPLMTFE 342

Query:   255 LYEDWLAAA 263
             LY++W+ A+
Sbjct:   343 LYDEWIQAS 351

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

UNIPROTKB|F1LST2 RGD1305664 "Protein RGD1305664" [Rattus norvegicus (taxid:10116)]

 Score = 307 (113.1 bits), Expect = 2.4e-26, P = 2.4e-26
 Identities = 65/129 (50%), Positives = 83/129 (64%)

Query:   137 HEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMD 196
             H ++L  L   LPQ+ +       KP F +PLEEHL + G +IAFPIE C   L + GM 
Sbjct:   209 HRKSLTLLQAVLPQIKAQQEAWVEKPSFGKPLEEHLMISGREIAFPIEACVTMLLECGMQ 268

Query:   197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY--DAHVLAGVLKLYLRELPEPLLTYA 254
             EEGLFRV   ASK+K+LK  LD  C+   D  EY  D H +AG LK YLRELPEPL+T+ 
Sbjct:   269 EEGLFRVAPSASKLKKLKAALDC-CVV--DVQEYSADPHAIAGALKSYLRELPEPLMTFE 325

Query:   255 LYEDWLAAA 263
             LY++W+ A+
Sbjct:   326 LYDEWIQAS 334

GO:0005737 "cytoplasm" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1LQX4 RGD1305664 "Protein RGD1305664" [Rattus norvegicus (taxid:10116)]

 Score = 307 (113.1 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 65/129 (50%), Positives = 83/129 (64%)

Query:   137 HEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMD 196
             H ++L  L   LPQ+ +       KP F +PLEEHL + G +IAFPIE C   L + GM 
Sbjct:   209 HRKSLTLLQAVLPQIKAQQEAWVEKPSFGKPLEEHLMISGREIAFPIEACVTMLLECGMQ 268

Query:   197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY--DAHVLAGVLKLYLRELPEPLLTYA 254
             EEGLFRV   ASK+K+LK  LD  C+   D  EY  D H +AG LK YLRELPEPL+T+ 
Sbjct:   269 EEGLFRVAPSASKLKKLKAALDC-CVV--DVQEYSADPHAIAGALKSYLRELPEPLMTFE 325

Query:   255 LYEDWLAAA 263
             LY++W+ A+
Sbjct:   326 LYDEWIQAS 334

GO:0005737 "cytoplasm" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

MGI|MGI:2144423 Arhgap44 "Rho GTPase activating protein 44" [Mus musculus (taxid:10090)]

 Score = 307 (113.1 bits), Expect = 2.6e-26, P = 2.6e-26
 Identities = 65/129 (50%), Positives = 83/129 (64%)

Query:   137 HEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMD 196
             H ++L  L   LPQ+ +       KP F +PLEEHL + G +IAFPIE C   L + GM 
Sbjct:   226 HRKSLTLLQAVLPQIKAQQEAWVEKPSFGKPLEEHLMISGREIAFPIEACVTMLLECGMQ 285

Query:   197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY--DAHVLAGVLKLYLRELPEPLLTYA 254
             EEGLFRV   ASK+K+LK  LD  C+   D  EY  D H +AG LK YLRELPEPL+T+ 
Sbjct:   286 EEGLFRVAPSASKLKKLKAALDC-CVV--DVQEYSADPHAIAGALKSYLRELPEPLMTFE 342

Query:   255 LYEDWLAAA 263
             LY++W+ A+
Sbjct:   343 LYDEWIQAS 351

GO:0003674 "molecular_function" evidence=ND

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	264
cd04386	203	cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTP	5e-40
pfam00620	152	pfam00620, RhoGAP, RhoGAP domain	1e-26
smart00324	174	smart00324, RhoGAP, GTPase-activator protein for R	3e-23
cd00159	169	cd00159, RhoGAP, RhoGAP: GTPase-activator protein	2e-21
cd04398	192	cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPas	5e-15
cd04377	186	cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGA	8e-15
cd04390	199	cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24	3e-14
cd07595	244	cd07595, BAR_RhoGAP_Rich-like, The Bin/Amphiphysin	7e-14
cd04403	187	cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_	1e-13
cd04402	192	cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP	8e-13
cd04378	203	cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: Rho	2e-12
cd04400	190	cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPas	6e-12
cd04383	188	cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPas	1e-11
cd04406	186	cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: Rho	2e-11
cd04387	196	cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-ac	2e-11
cd04374	203	cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activato	5e-11
cd04407	186	cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: Rho	1e-10
cd04404	195	cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGA	1e-10
cd04375	220	cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-	2e-10
cd04409	211	cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPas	2e-10
cd04384	195	cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPas	2e-10
cd04397	213	cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPas	2e-10
cd04391	216	cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP	3e-10
cd04372	194	cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGA	4e-10
cd04408	200	cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-	5e-10
cd04381	182	cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTP	9e-10
cd04389	187	cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-	1e-09
cd04385	184	cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-	2e-09
cd04394	202	cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGA	3e-09
cd04382	193	cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGA	4e-09
cd04373	185	cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-	5e-09
cd04379	207	cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-	1e-08
cd04395	196	cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP	2e-07
cd04392	208	cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP	3e-07
cd04376	206	cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (G	2e-06
cd04393	189	cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP	2e-06
cd04396	225	cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: Rho	3e-06
cd07618	246	cd07618, BAR_Rich1, The Bin/Amphiphysin/Rvs (BAR)	9e-05
cd07595	244	cd07595, BAR_RhoGAP_Rich-like, The Bin/Amphiphysin	1e-04
cd07619	248	cd07619, BAR_Rich2, The Bin/Amphiphysin/Rvs (BAR)	3e-04
cd04399	212	cd04399, RhoGAP_fRGD2, RhoGAP_fRGD2: RhoGAP (GTPas	0.001

>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

 Score =  137 bits (346), Expect = 5e-40
 Identities = 62/104 (59%), Positives = 70/104 (67%), Gaps = 1/104 (0%)

Query: 161 KPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAH 220
           KP+F  PLEEHL   G +IA PIE C   L + GM+EEGLFRV GGASK+KRLK  LDA 
Sbjct: 2   KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAG 61

Query: 221 CIKFEDALEY-DAHVLAGVLKLYLRELPEPLLTYALYEDWLAAA 263
                    Y D H +A  LK YLRELP+PLLTY LYEDW+ AA
Sbjct: 62  TFSLPLDEFYSDPHAVASALKSYLRELPDPLLTYNLYEDWVQAA 105

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain

 Score =  100 bits (252), Expect = 1e-26
 Identities = 40/84 (47%), Positives = 57/84 (67%)

Query: 181 FPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLK 240
             +E C   L + G+D EG+FRV+G AS++K L+   D+      D  E D HV+A +LK
Sbjct: 2   LIVEKCVEFLEKRGLDTEGIFRVSGSASRIKELREAFDSGEDVDLDLEEEDVHVVASLLK 61

Query: 241 LYLRELPEPLLTYALYEDWLAAAR 264
           L+LRELPEPLLT+ LYE+++ AA+
Sbjct: 62  LFLRELPEPLLTFELYEEFIEAAK 85

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. Length = 152

>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases

 Score = 92.3 bits (230), Expect = 3e-23
 Identities = 41/86 (47%), Positives = 58/86 (67%)

Query: 179 IAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGV 238
           I   +E C   L + G+D EG++RV+G  S+VK L+   D+      D  EYD H +AG+
Sbjct: 3   IPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELRDAFDSGPDPDLDLSEYDVHDVAGL 62

Query: 239 LKLYLRELPEPLLTYALYEDWLAAAR 264
           LKL+LRELPEPL+TY LYE+++ AA+
Sbjct: 63  LKLFLRELPEPLITYELYEEFIEAAK 88

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers. Length = 174

>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

 Score = 87.7 bits (218), Expect = 2e-21
 Identities = 37/83 (44%), Positives = 55/83 (66%), Gaps = 1/83 (1%)

Query: 182 PIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKL 241
            IE C   L + G++ EG+FRV+G ASK++ LK   D      +D  +YD H +A +LKL
Sbjct: 3   IIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFD-RGEDIDDLEDYDVHDVASLLKL 61

Query: 242 YLRELPEPLLTYALYEDWLAAAR 264
           YLRELPEPL+ + LY++++  A+
Sbjct: 62  YLRELPEPLIPFELYDEFIELAK 84

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins. Length = 169

>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

 Score = 70.9 bits (174), Expect = 5e-15
 Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 4/105 (3%)

Query: 164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIK 223
           F  PLE+ +   G  +   +  C +A+   G++ EG++R++G  S+V +LK   D   + 
Sbjct: 1   FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLN 60

Query: 224 FE----DALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
                 +  E D H +A +LKL+ RELPEPLLT AL  +++ AA+
Sbjct: 61  VLLISPEDYESDIHSVASLLKLFFRELPEPLLTKALSREFIEAAK 105

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

 Score = 70.5 bits (173), Expect = 8e-15
 Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 5/72 (6%)

Query: 194 GMDEEGLFRVTGGASKVKRLKTCL--DAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLL 251
           G+  EG++R +G A+K+K L+  L  D   +  ED   Y  HV+  VLK +LRELPEPL+
Sbjct: 30  GLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLED---YPIHVITSVLKQWLRELPEPLM 86

Query: 252 TYALYEDWLAAA 263
           T+ LYE++L A 
Sbjct: 87  TFELYENFLRAM 98

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

 Score = 69.0 bits (169), Expect = 3e-14
 Identities = 37/82 (45%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 183 IELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLY 242
           +E C   + + G+ EEGLFR+ G A+ VK+L+   DA      D+ + D H +A +LKLY
Sbjct: 26  VEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDS-DTDVHTVASLLKLY 84

Query: 243 LRELPEPLLTYALYEDWLAAAR 264
           LRELPEP++ +A YED+L+ A+
Sbjct: 85  LRELPEPVIPWAQYEDFLSCAQ 106

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 199

>gnl|CDD|153279 cd07595, BAR_RhoGAP_Rich-like, The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins

 Score = 68.9 bits (169), Expect = 7e-14
 Identities = 31/68 (45%), Positives = 42/68 (61%)

Query: 21  EEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPM 80
             D LAT+MY  +A+E EIA  ++D +  Q++ H  AL  L   LP+L   I  +P KP+
Sbjct: 177 CRDALATDMYEFLAKEAEIASYLIDLIEAQREYHRTALSVLEAVLPELQEQIEQSPSKPV 236

Query: 81  FCQPLEEH 88
           F QPLEEH
Sbjct: 237 FGQPLEEH 244

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. SH3BP1 is a Rac GAP that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of Rich1 has been shown to form oligomers, bind membranes and induce membrane tubulation. Length = 244

>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 31/81 (38%), Positives = 54/81 (66%), Gaps = 1/81 (1%)

Query: 183 IELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLD-AHCIKFEDALEYDAHVLAGVLKL 241
           + LC  A+ + G+D +G++RV+G  + +++L+  +D    +  +D+   D HV+ G LKL
Sbjct: 20  VRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKL 79

Query: 242 YLRELPEPLLTYALYEDWLAA 262
           + RELPEPL  Y+L+ D++AA
Sbjct: 80  FFRELPEPLFPYSLFNDFVAA 100

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

 Score = 65.0 bits (159), Expect = 8e-13
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 182 PIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKL 241
           PI      L Q G   EG+FR +  A   K LK  L++      D       +LA VLK 
Sbjct: 18  PILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSG--VEVDLKAEPVLLLASVLKD 75

Query: 242 YLRELPEPLLTYALYEDWLAAA 263
           +LR +P  LL+  LYE+W++A 
Sbjct: 76  FLRNIPGSLLSSDLYEEWMSAL 97

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 23/97 (23%)

Query: 179 IAFPIELCT-----RALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFE------DA 227
           + F I+ CT     RAL       +G++RV+G  ++V++L       C  FE      + 
Sbjct: 16  VPFIIKKCTSEIENRALGV-----QGIYRVSGSKARVEKL-------CQAFENGKDLVEL 63

Query: 228 LEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
            E   H ++ VLKL+LR+LPEPL+ + LY D++A A+
Sbjct: 64  SELSPHDISSVLKLFLRQLPEPLILFRLYNDFIALAK 100

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

 Score = 62.4 bits (152), Expect = 6e-12
 Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 2/64 (3%)

Query: 197 EEGLFRVTGGASKVKRLKTCLDAH--CIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYA 254
           EEG+FR++G AS +K+LK   +       F  +L  D H +AG+LKLYLRELP  +L   
Sbjct: 41  EEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHTVAGLLKLYLRELPTLILGGE 100

Query: 255 LYED 258
           L+ D
Sbjct: 101 LHND 104

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 190

>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 9/107 (8%)

Query: 163 MFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI 222
           +F   LEE++   G  I   +E C R +   G+  +G+FRV+G   +V  +K   +    
Sbjct: 2   LFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFE---- 57

Query: 223 KFEDALEY-----DAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
           + ED L       D + +AGVLKLY R L  PL     +ED ++  +
Sbjct: 58  RGEDPLADDQNDHDINSVAGVLKLYFRGLENPLFPKERFEDLMSCVK 104

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 188

>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

 Score = 61.2 bits (148), Expect = 2e-11
 Identities = 30/71 (42%), Positives = 48/71 (67%), Gaps = 5/71 (7%)

Query: 194 GMDEEGLFRVTGGASKVKRLKTCLD--AHCIKFEDALEYDAHVLAGVLKLYLRELPEPLL 251
           G+  EG++R +G  +K+K L+  LD  A+ +  +D   Y+ HV+A V K +LR+LP PL+
Sbjct: 30  GLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDD---YNIHVIASVFKQWLRDLPNPLM 86

Query: 252 TYALYEDWLAA 262
           T+ LYE++L A
Sbjct: 87  TFELYEEFLRA 97

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

 Score = 61.1 bits (148), Expect = 2e-11
 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 7/83 (8%)

Query: 178 KIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDAL----EYDAH 233
           K+ + +  C   + + GM+E G++R++G A+ ++ LK   D +    +D      E D +
Sbjct: 15  KVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTN---NKDVSVMLSEMDVN 71

Query: 234 VLAGVLKLYLRELPEPLLTYALY 256
            +AG LKLY RELPEPL T  LY
Sbjct: 72  AIAGTLKLYFRELPEPLFTDELY 94

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|239839 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

 Score = 60.1 bits (146), Expect = 5e-11
 Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 8/111 (7%)

Query: 159 PMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCL- 217
           P +       E  L  IG K    +  C  A+   G++E+GL+RV G  SKV++L +   
Sbjct: 11  PGRLQSEVEGEAQLDDIGFKF---VRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGL 67

Query: 218 ---DAHCIKFED-ALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
               +     +    E++   +   LK YLR LPEPL+TY L+ D++ AA+
Sbjct: 68  DPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMTYELHNDFINAAK 118

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

 Score = 59.2 bits (143), Expect = 1e-10
 Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 194 GMDEEGLFRVTGGASKVKRLKTCL--DAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLL 251
           G+  EG++R +G A+++K L   L  D   +K E+   Y  H + G+LK +LRELPEPL+
Sbjct: 30  GLYTEGIYRKSGSANRMKELHQLLQADPENVKLEN---YPIHAITGLLKQWLRELPEPLM 86

Query: 252 TYALYEDWLAA 262
           T+A Y D+L A
Sbjct: 87  TFAQYNDFLRA 97

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 194 GMDEEGLFRVTGGASKVKRLKT-CLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLT 252
            +  EG+FR +     VK ++        + F+     D H+ A +LK +LRELPEPLLT
Sbjct: 38  ALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQ--YEDVHLPAVILKTFLRELPEPLLT 95

Query: 253 YALYED 258
           + LY+D
Sbjct: 96  FDLYDD 101

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 5/103 (4%)

Query: 161 KPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAH 220
           K +F  PL  +L   G  +   I+   R L    +D+ GLFR +G  S++++L++ +++ 
Sbjct: 2   KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESS 61

Query: 221 C--IKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLA 261
              + ++    YD   +A +LK Y R+LPEPLLT  L E ++A
Sbjct: 62  TDNVNYDGQQAYD---VADMLKQYFRDLPEPLLTNKLSETFIA 101

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 220

>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 23/97 (23%)

Query: 179 IAFPIELCT-----RALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDAL----- 228
           I F I+ CT     RALC      +G++RV G  S+V++L       C  FE+       
Sbjct: 16  IPFIIKKCTSEIESRALCL-----KGIYRVNGAKSRVEKL-------CQAFENGKDLVEL 63

Query: 229 -EYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
            E   H ++ VLKLYLR+LPEPL+ + LY +++  A+
Sbjct: 64  SELSPHDISNVLKLYLRQLPEPLILFRLYNEFIGLAK 100

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 211

>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 3/103 (2%)

Query: 162 PMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHC 221
            +F   L EHL   G  +   ++ CT  + + G+  +G++R++G AS ++RL+   D+  
Sbjct: 1   RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQ 59

Query: 222 IK--FEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAA 262
           I    +D    D H ++ + KLY RELP PLLTY LYE +  A
Sbjct: 60  IPDLTKDVYIQDIHSVSSLCKLYFRELPNPLLTYQLYEKFSEA 102

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|239862 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 30/87 (34%), Positives = 50/87 (57%)

Query: 178 KIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAG 237
           +I   I+    A+ Q+ M  EG+FR  G   ++K L   +D +  +  D  + +   LA 
Sbjct: 26  RIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENPVQLAA 85

Query: 238 VLKLYLRELPEPLLTYALYEDWLAAAR 264
           +LK +LRELP+PLLT+ LY  W+++ +
Sbjct: 86  LLKKFLRELPDPLLTFKLYRLWISSQK 112

Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 213

>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 5/62 (8%)

Query: 194 GMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDA---HVLAGVLKLYLRELPEPL 250
           G++ EG+ R+ G A +VK L   L+A    +E    +D    H  A +LKL++RELP+PL
Sbjct: 37  GLETEGILRIPGSAQRVKFLCQELEAKF--YEGTFLWDQVKQHDAASLLKLFIRELPQPL 94

Query: 251 LT 252
           LT
Sbjct: 95  LT 96

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 216

>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

 Score = 57.5 bits (139), Expect = 4e-10
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 2/103 (1%)

Query: 164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIK 223
           +   L   +     +    +++C R +   G+  EGL+RV+G A +++ +K   D    K
Sbjct: 1   YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEK 60

Query: 224 FEDALEY--DAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
            + +     D +V+ G LKLY R+LP P++TY  Y  ++ AA+
Sbjct: 61  ADISATVYPDINVITGALKLYFRDLPIPVITYDTYPKFIDAAK 103

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 194

>gnl|CDD|239873 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

 Score = 57.1 bits (138), Expect = 5e-10
 Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 13/93 (13%)

Query: 178 KIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFE------DALEYD 231
           ++ F +  CT  +    +  +G++R++G  ++V++L       C  FE      D   + 
Sbjct: 15  EVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKL-------CQAFENGRDLVDLSGHS 67

Query: 232 AHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
            H +  VLK +L+ELPEP+L + LY+D++A A+
Sbjct: 68  PHDITSVLKHFLKELPEPVLPFQLYDDFIALAK 100

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 200

>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

 Score = 56.3 bits (136), Expect = 9e-10
 Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 176 GCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLD-AHCIKFEDALEYDAHV 234
           G  +      C   + + GM  EG+++V+G  SKV  LK   +       E   EY+   
Sbjct: 17  GIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLE---EYEPPT 73

Query: 235 LAGVLKLYLRELPEPLLTYAL 255
           +A +LK YLRELPEPLLT  L
Sbjct: 74  VASLLKQYLRELPEPLLTKEL 94

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 182

>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 198 EGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYE 257
           EG+FRV G   +V  LK  +D     +  +   D HV A +LKL+LREL EPL+  ALY+
Sbjct: 41  EGIFRVPGDIDEVNELKLRVDQW--DYPLSGLEDPHVPASLLKLWLRELEEPLIPDALYQ 98

Query: 258 DWLAA 262
             ++A
Sbjct: 99  QCISA 103

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 183 IELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCL--DAHCIKFEDALEYDAHVLAGVLK 240
           ++ C   + Q G+  EG++R  G  S VK+L      DA  ++     EY  H +A VLK
Sbjct: 19  VDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQL-REGEYTVHDVADVLK 77

Query: 241 LYLRELPEPLLTYALYEDWLAAA 263
            +LR+LP+PLLT  L+ +W+ AA
Sbjct: 78  RFLRDLPDPLLTSELHAEWIEAA 100

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 184

>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

 Score = 55.2 bits (133), Expect = 3e-09
 Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 181 FPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLK 240
           F ++ CT  L  +    EGLFR +G   + K LK  L+        AL  D   +AG+LK
Sbjct: 23  FLVDACTFLLDHLST--EGLFRKSGSVVRQKELKAKLEGGEACLSSALPCD---VAGLLK 77

Query: 241 LYLRELPEPLLTYALYEDWLAAA 263
            + RELPEPLL Y L+E  L A 
Sbjct: 78  QFFRELPEPLLPYDLHEALLKAQ 100

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 202

>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 13/85 (15%)

Query: 186 CTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKF------EDALEYDAHVLAGVL 239
           C   +   G+ EEGL+RV+G   +VK LK        KF       +  + D HV+ G L
Sbjct: 24  CVNEIEARGLTEEGLYRVSGSEREVKALKE-------KFLRGKTVPNLSKVDIHVICGCL 76

Query: 240 KLYLRELPEPLLTYALYEDWLAAAR 264
           K +LR L EPL+T+AL+++++ AA 
Sbjct: 77  KDFLRSLKEPLITFALWKEFMEAAE 101

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 193

>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

 Score = 54.4 bits (131), Expect = 5e-09
 Identities = 23/83 (27%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 183 IELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDA-HCIKFEDALEYDAHVLAGVLKL 241
           +E C   +   G++ EG++RV+G  + +  L+   D  H +    + ++  + +AG LK 
Sbjct: 19  LEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDL-VSKDFTVNAVAGALKS 77

Query: 242 YLRELPEPLLTYALYEDWLAAAR 264
           +  ELP+PL+ Y+++ + + AA+
Sbjct: 78  FFSELPDPLIPYSMHLELVEAAK 100

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 185

>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 194 GMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY--DAHVLAGVLKLYLRELPEPLL 251
           G+D  GL+R+ G A+K K L+   + +    E + E   D +V+ GVLK YLRELPEPL+
Sbjct: 33  GLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVLKDYLRELPEPLI 92

Query: 252 TYALYEDWLAAA 263
           T  LYE  L A 
Sbjct: 93  TPQLYEMVLEAL 104

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 207

>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 183 IELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHC--IKFEDALEYDAHVLAGVLK 240
           +E+C   +   G++  G++RV G  + +  L+  L+     I  +D    D +V++ +LK
Sbjct: 22  VEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLLK 81

Query: 241 LYLRELPEPLLTYALYEDWLAAAR 264
            + R+LPEPL T  LY D++ A R
Sbjct: 82  SFFRKLPEPLFTNELYPDFIEANR 105

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 27/66 (40%), Positives = 39/66 (59%)

Query: 198 EGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYE 257
           EGLFR  G +++ + L+  L++      ++  + AH  A VLK +L ELPEPLLT+A Y 
Sbjct: 27  EGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKGFLGELPEPLLTHAHYP 86

Query: 258 DWLAAA 263
             L  A
Sbjct: 87  AHLQIA 92

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 208

>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 183 IELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLD-AHCIKFEDALEYDAHVLAGVLKL 241
           +E C + L + G+   G+FRV     +V++L+   D    +  ++   +  H +A +LK 
Sbjct: 13  VESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDE--NHSVHDVAALLKE 70

Query: 242 YLRELPEPLLTYALYEDWLAAA 263
           + R++P+PLL   LY  ++  A
Sbjct: 71  FFRDMPDPLLPRELYTAFIGTA 92

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 206

>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 162 PMFCQPLEE--HLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDA 219
            +F  PL+E          +   +      L Q G+++EGLFRV G A  V+ L+  LD+
Sbjct: 1   KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDS 60

Query: 220 HCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYAL 255
                    E D    A +L+L+L+ELPE L+  +L
Sbjct: 61  GEEVDLSK-EADVCSAASLLRLFLQELPEGLIPASL 95

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude. Length = 189

>gnl|CDD|239861 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 186 CTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDA---HCIKFEDALEYDAHVLAGVLKLY 242
           C   L +   + EG+FRV G + +++ L+        +   F+    Y  H  A VL+ Y
Sbjct: 39  CGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSFDW-DGYTVHDAASVLRRY 97

Query: 243 LRELPEPLLTYALYE 257
           L  LPEPL+   LYE
Sbjct: 98  LNNLPEPLVPLDLYE 112

Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 225

>gnl|CDD|153302 cd07618, BAR_Rich1, The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1

 Score = 42.3 bits (99), Expect = 9e-05
 Identities = 23/67 (34%), Positives = 35/67 (52%)

Query: 22  EDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPMF 81
           +D LA +MY   ++E E A+  V  +  Q   H +AL  + + LP++ +       KP F
Sbjct: 180 KDQLAADMYNFASKEGEYAKFFVLLLEAQADYHRKALAVIEKVLPEIQAHQDKWMEKPAF 239

Query: 82  CQPLEEH 88
             PLEEH
Sbjct: 240 GTPLEEH 246

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation. Length = 246

>gnl|CDD|153279 cd07595, BAR_RhoGAP_Rich-like, The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 18/35 (51%), Positives = 21/35 (60%)

Query: 137 HEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEH 171
           H  AL  L   LP+L   I  +P KP+F QPLEEH
Sbjct: 210 HRTALSVLEAVLPELQEQIEQSPSKPVFGQPLEEH 244

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. SH3BP1 is a Rac GAP that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of Rich1 has been shown to form oligomers, bind membranes and induce membrane tubulation. Length = 244

>gnl|CDD|153303 cd07619, BAR_Rich2, The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 21/66 (31%), Positives = 35/66 (53%)

Query: 23  DTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFC 82
           D L+ +MY  +A+E + A      + +Q + H ++L  L   LPQ+ +       KP + 
Sbjct: 183 DQLSADMYSFVAKEIDYANYFQTLIEVQAEYHRKSLELLQSVLPQIKAHQEAWVEKPSYG 242

Query: 83  QPLEEH 88
           +PLEEH
Sbjct: 243 KPLEEH 248

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 248

>gnl|CDD|239864 cd04399, RhoGAP_fRGD2, RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 229 EYDAHVLAGVLKLYLRELPEPLLTYALYED 258
           +++   +A VLKLYL ELP+ L+ + +Y+ 
Sbjct: 75  KFEPSTVASVLKLYLLELPDSLIPHDIYDL 104

Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 212

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	264
cd04408	200	RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator	99.93
cd04383	188	RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activato	99.93
cd04387	196	RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator pr	99.93
cd04375	220	RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator	99.93
cd04372	194	RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-	99.93
cd04403	187	RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: G	99.93
cd04384	195	RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activato	99.93
cd04378	203	RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPas	99.93
cd04409	211	RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activato	99.93
cd04381	182	RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activa	99.92
cd04407	186	RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPas	99.92
cd04379	207	RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator	99.92
cd04406	186	RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPas	99.92
cd04386	203	RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activa	99.92
cd04397	213	RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activato	99.92
cd04390	199	RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPas	99.92
cd04373	185	RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator	99.91
cd04391	216	RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-ac	99.91
cd04396	225	RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPas	99.91
KOG1451|consensus	812		99.9
cd04398	192	RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activato	99.9
cd04402	192	RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-ac	99.9
KOG4270|consensus	577		99.9
cd04389	187	RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator	99.9
cd04395	196	RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-ac	99.89
cd04377	186	RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-	99.89
cd04400	190	RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activato	99.89
cd04393	189	RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-ac	99.89
cd04394	202	RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-	99.89
cd04399	212	RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activato	99.88
cd04404	195	RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-	99.88
cd04385	184	RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator	99.88
cd04382	193	RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-	99.87
cd04388	200	RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator pr	99.87
cd04376	206	RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-acti	99.86
cd04380	220	RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activato	99.84
cd04392	208	RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-ac	99.84
KOG2200|consensus	674		99.81
cd04374	203	RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein	99.81
KOG4269|consensus	1112		99.77
smart00324	174	RhoGAP GTPase-activator protein for Rho-like GTPas	99.76
KOG1450|consensus	650		99.75
PF00620	151	RhoGAP: RhoGAP domain; InterPro: IPR000198 Members	99.74
KOG4407|consensus	1973		99.73
KOG2710|consensus	412		99.73
cd00159	169	RhoGAP RhoGAP: GTPase-activator protein (GAP) for	99.71
KOG1453|consensus	918		99.62
KOG3564|consensus	604		99.58
KOG4406|consensus	467		99.56
KOG1452|consensus	442		99.53
cd07618	246	BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of	99.51
cd07619	248	BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of	99.48
KOG1117|consensus	1186		99.47
cd07620	257	BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of	99.32
cd07595	244	BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR)	99.28
KOG4271|consensus	1100		99.16
cd04401	198	RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activato	98.75
cd04405	235	RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPas	98.6
KOG4724|consensus	741		98.45
KOG3565|consensus	640		97.99
KOG4370|consensus	514		97.88
cd07615	223	BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) do	97.54
cd07592	223	BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) dom	97.3
cd07613	223	BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) do	97.26
cd07614	223	BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) do	96.71
KOG4724|consensus	741		96.15
cd07593	215	BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom	96.12
PF08101	420	DUF1708: Domain of unknown function (DUF1708); Int	96.01
cd01249	104	PH_oligophrenin Oligophrenin Pleckstrin homology (	94.38
smart00721	239	BAR BAR domain.	94.18
cd07618	246	BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of	92.62
cd07619	248	BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of	90.78
PF00784	114	MyTH4: MyTH4 domain; InterPro: IPR000857 The micro	90.0
KOG1118|consensus	366		89.06
PF03114	229	BAR: BAR domain; InterPro: IPR004148 Endocytosis a	88.93
cd07595	244	BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR)	86.06
cd07600	242	BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of	84.94
cd07616	229	BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) do	82.31
KOG1453|consensus	918		81.94

>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

Probab=99.93  E-value=4e-26  Score=198.38  Aligned_cols=99  Identities=26%  Similarity=0.496  Sum_probs=92.2

Q ss_pred             CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHH
Q psy16474        164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYL  243 (264)
Q Consensus       164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yL  243 (264)
                      ||+||+.+.++++..||.+|.+|++||+++|+++|||||++|+..++++|++.+|.|... .+...+|+|+||++||.||
T Consensus         1 FGv~l~~l~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~-~~~~~~~~h~va~lLK~fL   79 (200)
T cd04408           1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDL-VDLSGHSPHDITSVLKHFL   79 (200)
T ss_pred             CCCCHHHHHHhCCCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCc-cCcccCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998632 2334579999999999999


Q ss_pred             hcCCCCCCChHhHHHHHHhh
Q psy16474        244 RELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       244 ReLPePLit~~ly~~~i~a~  263 (264)
                      |+||+||+|+++|+.|++++
T Consensus        80 ReLPePLi~~~~y~~~~~~~   99 (200)
T cd04408          80 KELPEPVLPFQLYDDFIALA   99 (200)
T ss_pred             HhCCCccCCHHHHHHHHHHH
Confidence            99999999999999999875

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

Probab=99.93  E-value=5.5e-26  Score=195.74  Aligned_cols=102  Identities=31%  Similarity=0.547  Sum_probs=93.5

Q ss_pred             CCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCC-CcCCCCHHHHHHHHH
Q psy16474        162 PMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFE-DALEYDAHVLAGVLK  240 (264)
Q Consensus       162 ~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~-~~~~~D~h~vaslLK  240 (264)
                      .+||++|+++++.+|..||.+|.+|++||+++|+.+|||||++|+.++++++++.+|+|..... +...+|+|+||++||
T Consensus         1 k~FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK   80 (188)
T cd04383           1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLK   80 (188)
T ss_pred             CcCCccHHHHHHHCCCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHH
Confidence            3799999999999999999999999999999999999999999999999999999999864322 223569999999999


Q ss_pred             HHHhcCCCCCCChHhHHHHHHhh
Q psy16474        241 LYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       241 ~yLReLPePLit~~ly~~~i~a~  263 (264)
                      .|||+||+||+|+++|+.|++++
T Consensus        81 ~fLReLPepLip~~~~~~~~~~~  103 (188)
T cd04383          81 LYFRGLENPLFPKERFEDLMSCV  103 (188)
T ss_pred             HHHHhCCCccCCHHHHHHHHHHH
Confidence            99999999999999999999875

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group

>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

Probab=99.93  E-value=1.1e-25  Score=195.19  Aligned_cols=100  Identities=31%  Similarity=0.560  Sum_probs=92.1

Q ss_pred             CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCC-CCcCCCCHHHHHHHHHHH
Q psy16474        164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKF-EDALEYDAHVLAGVLKLY  242 (264)
Q Consensus       164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~-~~~~~~D~h~vaslLK~y  242 (264)
                      ||+||+..+.+++..||.+|.+|+++|+++|+++|||||++|+.+++++|++.+|++..+. ......|+|+||++||.|
T Consensus         1 FGv~L~~~~~r~~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f   80 (196)
T cd04387           1 FGVKISTVTKRERSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLY   80 (196)
T ss_pred             CCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999975432 233457999999999999


Q ss_pred             HhcCCCCCCChHhHHHHHHhh
Q psy16474        243 LRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       243 LReLPePLit~~ly~~~i~a~  263 (264)
                      ||+||+||||+++|+.|++++
T Consensus        81 LReLPePLip~~~y~~~~~~~  101 (196)
T cd04387          81 FRELPEPLFTDELYPNFAEGI  101 (196)
T ss_pred             HHhCCCccCCHHHHHHHHHHH
Confidence            999999999999999999875

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch

>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

Probab=99.93  E-value=1.1e-25  Score=198.30  Aligned_cols=103  Identities=32%  Similarity=0.450  Sum_probs=93.6

Q ss_pred             CCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHH
Q psy16474        160 MKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVL  239 (264)
Q Consensus       160 ~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslL  239 (264)
                      ++++||+||+.++++.|..||.+|.+|++||+.+|+++|||||++|+.+++++|+..+|.+... .+....++|+||++|
T Consensus         1 ~~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~-~~~~~~~~~~va~lL   79 (220)
T cd04375           1 DKNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDN-VNYDGQQAYDVADML   79 (220)
T ss_pred             CCCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCc-cCcccccHHHHHHHH
Confidence            3689999999999999999999999999999999999999999999999999999999986422 233456999999999


Q ss_pred             HHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        240 KLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       240 K~yLReLPePLit~~ly~~~i~a~  263 (264)
                      |.|||+||+||+|+++|+.|+++.
T Consensus        80 K~flReLPePLlt~~l~~~fi~~~  103 (220)
T cd04375          80 KQYFRDLPEPLLTNKLSETFIAIF  103 (220)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHH
Confidence            999999999999999999999864

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

Probab=99.93  E-value=1.3e-25  Score=194.12  Aligned_cols=101  Identities=29%  Similarity=0.574  Sum_probs=90.8

Q ss_pred             CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhcc--CCCCCcCCCCHHHHHHHHHH
Q psy16474        164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHC--IKFEDALEYDAHVLAGVLKL  241 (264)
Q Consensus       164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~--~~~~~~~~~D~h~vaslLK~  241 (264)
                      ||+||++++++.+..||.+|.+|+++|+++|+.+|||||++|+.++|++|+..+|++.  .++......|+|+||++||.
T Consensus         1 FG~~L~~~~~~~~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~   80 (194)
T cd04372           1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKL   80 (194)
T ss_pred             CCCChHHHHHHcCCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999853  23322212399999999999


Q ss_pred             HHhcCCCCCCChHhHHHHHHhhC
Q psy16474        242 YLRELPEPLLTYALYEDWLAAAR  264 (264)
Q Consensus       242 yLReLPePLit~~ly~~~i~a~k  264 (264)
                      |||+||+||+|+++|+.|+++++
T Consensus        81 flReLP~pLi~~~~~~~~~~~~~  103 (194)
T cd04372          81 YFRDLPIPVITYDTYPKFIDAAK  103 (194)
T ss_pred             HHHhCCCccCCHHHHHHHHHHHh
Confidence            99999999999999999998753

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT

>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

Probab=99.93  E-value=1.5e-25  Score=192.78  Aligned_cols=101  Identities=34%  Similarity=0.629  Sum_probs=92.2

Q ss_pred             CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccC-CCCCcCCCCHHHHHHHHHHH
Q psy16474        164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI-KFEDALEYDAHVLAGVLKLY  242 (264)
Q Consensus       164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~-~~~~~~~~D~h~vaslLK~y  242 (264)
                      ||+||+++++++|..||.+|.+|+++|+.+|+++|||||++|+.+.+++|+..+|.+.. ++......|+|++|++||.|
T Consensus         1 FGv~L~~~~~~~~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f   80 (187)
T cd04403           1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLF   80 (187)
T ss_pred             CCCChHHHHHHcCCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999753 33333345999999999999


Q ss_pred             HhcCCCCCCChHhHHHHHHhhC
Q psy16474        243 LRELPEPLLTYALYEDWLAAAR  264 (264)
Q Consensus       243 LReLPePLit~~ly~~~i~a~k  264 (264)
                      ||+||+||+|+++|+.|+++++
T Consensus        81 LReLPepLi~~~~~~~~~~~~~  102 (187)
T cd04403          81 FRELPEPLFPYSLFNDFVAAIK  102 (187)
T ss_pred             HhcCCCCcCCHHHHHHHHHHHH
Confidence            9999999999999999998753

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

Probab=99.93  E-value=1.5e-25  Score=194.01  Aligned_cols=101  Identities=36%  Similarity=0.619  Sum_probs=91.4

Q ss_pred             CCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccC-CCCCc-CCCCHHHHHHHH
Q psy16474        162 PMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI-KFEDA-LEYDAHVLAGVL  239 (264)
Q Consensus       162 ~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~-~~~~~-~~~D~h~vaslL  239 (264)
                      ++||++|++++.+.|..||.+|.+|++||+.+|+ +|||||++|+.+++++|+..+|.|.. ++... ...|+|+||++|
T Consensus         1 ~vFG~~L~~~~~~~g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL   79 (195)
T cd04384           1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLC   79 (195)
T ss_pred             CcCCccHHHHHHHcCCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHH
Confidence            5899999999999999999999999999999999 59999999999999999999999863 22221 235999999999


Q ss_pred             HHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        240 KLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       240 K~yLReLPePLit~~ly~~~i~a~  263 (264)
                      |.|||+||+||+|+++|+.|+++.
T Consensus        80 K~flReLPePLi~~~~y~~~~~~~  103 (195)
T cd04384          80 KLYFRELPNPLLTYQLYEKFSEAV  103 (195)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHH
Confidence            999999999999999999999875

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

Probab=99.93  E-value=1.5e-25  Score=195.14  Aligned_cols=99  Identities=29%  Similarity=0.535  Sum_probs=92.0

Q ss_pred             CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHH
Q psy16474        164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYL  243 (264)
Q Consensus       164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yL  243 (264)
                      ||+||+.++.+.+..||.+|.+|+++|+++|+.+|||||++|+.+++++|+..||.|... .+...+|+|+||++||.||
T Consensus         1 FG~~L~~~~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~-~~~~~~~~h~va~~LK~fL   79 (203)
T cd04378           1 FGVDFSQVPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDL-VELSELSPHDISSVLKLFL   79 (203)
T ss_pred             CCCChHHHHHHCCCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCc-cccccCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998532 2344679999999999999


Q ss_pred             hcCCCCCCChHhHHHHHHhh
Q psy16474        244 RELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       244 ReLPePLit~~ly~~~i~a~  263 (264)
                      |+||+||+|+++|+.|++++
T Consensus        80 ReLpePlip~~~y~~~~~~~   99 (203)
T cd04378          80 RQLPEPLILFRLYNDFIALA   99 (203)
T ss_pred             HhCCCccCCHHHHHHHHHHH
Confidence            99999999999999999875

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge

>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

Probab=99.93  E-value=1.6e-25  Score=196.17  Aligned_cols=99  Identities=30%  Similarity=0.514  Sum_probs=91.8

Q ss_pred             CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHH
Q psy16474        164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYL  243 (264)
Q Consensus       164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yL  243 (264)
                      ||+||++++.+.+..||.+|.+|+++|+++|+.+|||||++|+.+++++|+..||.|... .+...+|+|+||++||.||
T Consensus         1 FG~~L~~~~~~~~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~-~~~~~~~~h~va~~LK~fL   79 (211)
T cd04409           1 FGADFAQVAKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDL-VELSELSPHDISNVLKLYL   79 (211)
T ss_pred             CCCChHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCc-cccccCCHHHHHHHHHHHH
Confidence            999999999999899999999999999999999999999999999999999999998632 2334679999999999999


Q ss_pred             hcCCCCCCChHhHHHHHHhh
Q psy16474        244 RELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       244 ReLPePLit~~ly~~~i~a~  263 (264)
                      |+||+||+|+++|+.|++++
T Consensus        80 ReLPePLi~~~~~~~~~~~~   99 (211)
T cd04409          80 RQLPEPLILFRLYNEFIGLA   99 (211)
T ss_pred             HhCCCcccCHHHHHHHHHHH
Confidence            99999999999999999875

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

Probab=99.92  E-value=4.3e-25  Score=189.16  Aligned_cols=98  Identities=34%  Similarity=0.512  Sum_probs=90.1

Q ss_pred             CCCcHHHHHhhh----CCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHH
Q psy16474        164 FCQPLEEHLALI----GCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVL  239 (264)
Q Consensus       164 FG~~L~~~l~~~----~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslL  239 (264)
                      ||+||+++++++    |..||.+|.+|++||+++|+++|||||++|+.+++++|+..+|+|..  .+...+|+|+||++|
T Consensus         1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~--~~~~~~d~h~va~lL   78 (182)
T cd04381           1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRES--PNLEEYEPPTVASLL   78 (182)
T ss_pred             CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCC--CCccccChHHHHHHH
Confidence            899999999875    56799999999999999999999999999999999999999999863  233467999999999


Q ss_pred             HHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        240 KLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       240 K~yLReLPePLit~~ly~~~i~a~  263 (264)
                      |.|||+||+||+|+++|+.|++++
T Consensus        79 K~fLReLP~pLi~~~~~~~~~~~~  102 (182)
T cd04381          79 KQYLRELPEPLLTKELMPRFEEAC  102 (182)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHc
Confidence            999999999999999999999875

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int

>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

Probab=99.92  E-value=5.1e-25  Score=189.43  Aligned_cols=98  Identities=32%  Similarity=0.526  Sum_probs=89.5

Q ss_pred             CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHH
Q psy16474        164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYL  243 (264)
Q Consensus       164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yL  243 (264)
                      ||+||+.++. ++..||.+|.+|++||+++|+.+|||||++|+.+++++|++.+|.|.... +...+|+|+||++||.||
T Consensus         1 FGv~L~~~~~-~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~-~~~~~d~h~va~lLK~fl   78 (186)
T cd04407           1 FGVRVGSLTS-NKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENV-KLENYPIHAITGLLKQWL   78 (186)
T ss_pred             CCCcHHHHHh-CCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCccc-CcccCCHHHHHHHHHHHH
Confidence            9999999875 78899999999999999999999999999999999999999999875332 334679999999999999


Q ss_pred             hcCCCCCCChHhHHHHHHhh
Q psy16474        244 RELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       244 ReLPePLit~~ly~~~i~a~  263 (264)
                      |+||+||+|+++|+.|+.++
T Consensus        79 ReLPepLi~~~~~~~~~~~~   98 (186)
T cd04407          79 RELPEPLMTFAQYNDFLRAV   98 (186)
T ss_pred             HhCCCccCCHHHHHHHHHHH
Confidence            99999999999999999875

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

Probab=99.92  E-value=5.4e-25  Score=192.27  Aligned_cols=100  Identities=36%  Similarity=0.594  Sum_probs=88.9

Q ss_pred             CCCcHHHHHhhh--CCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccC--CCCCcCCCCHHHHHHHH
Q psy16474        164 FCQPLEEHLALI--GCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI--KFEDALEYDAHVLAGVL  239 (264)
Q Consensus       164 FG~~L~~~l~~~--~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~--~~~~~~~~D~h~vaslL  239 (264)
                      ||+||+.++.++  +..||.+|++|++||+.+|+++|||||++|+.+++++|++.||++..  ++......|+|+||++|
T Consensus         1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL   80 (207)
T cd04379           1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL   80 (207)
T ss_pred             CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence            999999999984  56799999999999999999999999999999999999999998743  22211123899999999


Q ss_pred             HHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        240 KLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       240 K~yLReLPePLit~~ly~~~i~a~  263 (264)
                      |.|||+||+||+|+++|+.|++++
T Consensus        81 K~fLReLPePLip~~~y~~~~~~~  104 (207)
T cd04379          81 KDYLRELPEPLITPQLYEMVLEAL  104 (207)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHH
Confidence            999999999999999999999875

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

Probab=99.92  E-value=6.5e-25  Score=188.80  Aligned_cols=98  Identities=32%  Similarity=0.569  Sum_probs=88.9

Q ss_pred             CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHH
Q psy16474        164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYL  243 (264)
Q Consensus       164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yL  243 (264)
                      ||++|+.+.. .++.||.+|.+|++||+.+|+.+|||||++|+.++|++|++.+|.+... .+...+|+|+||++||.||
T Consensus         1 FGv~L~~l~~-~~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~-~~~~~~d~h~va~lLK~fL   78 (186)
T cd04406           1 FGVELSRLTS-EDRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANS-VNLDDYNIHVIASVFKQWL   78 (186)
T ss_pred             CCCchHHHHH-CCCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCC-CCcccCCHHHHHHHHHHHH
Confidence            9999998865 5778999999999999999999999999999999999999999987532 2344679999999999999


Q ss_pred             hcCCCCCCChHhHHHHHHhh
Q psy16474        244 RELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       244 ReLPePLit~~ly~~~i~a~  263 (264)
                      |+||+||+|+++|+.|++++
T Consensus        79 ReLPePLi~~~~y~~~~~~~   98 (186)
T cd04406          79 RDLPNPLMTFELYEEFLRAM   98 (186)
T ss_pred             HhCCCccCCHHHHHHHHHHH
Confidence            99999999999999999875

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife

>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

Probab=99.92  E-value=9.4e-25  Score=189.98  Aligned_cols=103  Identities=60%  Similarity=0.984  Sum_probs=94.2

Q ss_pred             CCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCC-CcCCCCHHHHHHHH
Q psy16474        161 KPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFE-DALEYDAHVLAGVL  239 (264)
Q Consensus       161 ~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~-~~~~~D~h~vaslL  239 (264)
                      +++||+||++++..+|..||.+|.+|+.+|+++|+.+|||||++|+.+++++|+..+|.|..... .....|+|+||++|
T Consensus         2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~l   81 (203)
T cd04386           2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASAL   81 (203)
T ss_pred             CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999864321 12235999999999


Q ss_pred             HHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        240 KLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       240 K~yLReLPePLit~~ly~~~i~a~  263 (264)
                      |.|||+||+||+|+++|+.|++++
T Consensus        82 K~fLreLp~pli~~~~~~~~~~~~  105 (203)
T cd04386          82 KSYLRELPDPLLTYNLYEDWVQAA  105 (203)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHH
Confidence            999999999999999999999875

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins

Probab=99.92  E-value=8e-25  Score=191.89  Aligned_cols=101  Identities=35%  Similarity=0.583  Sum_probs=91.3

Q ss_pred             CCCcHHHHHhhhCC-----------CCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCH
Q psy16474        164 FCQPLEEHLALIGC-----------KIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDA  232 (264)
Q Consensus       164 FG~~L~~~l~~~~~-----------~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~  232 (264)
                      ||+||+.+++++|.           .||.+|.+|+++|+++|+.+|||||++|+..++++|+..+|.+.....+....|+
T Consensus         1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~   80 (213)
T cd04397           1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP   80 (213)
T ss_pred             CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence            99999999999765           5999999999999999999999999999999999999999997543223345699


Q ss_pred             HHHHHHHHHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474        233 HVLAGVLKLYLRELPEPLLTYALYEDWLAAAR  264 (264)
Q Consensus       233 h~vaslLK~yLReLPePLit~~ly~~~i~a~k  264 (264)
                      |+||++||.|||+||+||+|+++|+.|+++++
T Consensus        81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~  112 (213)
T cd04397          81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQK  112 (213)
T ss_pred             HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHc
Confidence            99999999999999999999999999998753

Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

Probab=99.92  E-value=1.4e-24  Score=188.24  Aligned_cols=101  Identities=42%  Similarity=0.655  Sum_probs=89.9

Q ss_pred             CCCCCcHHHHHhhhC----CCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHH
Q psy16474        162 PMFCQPLEEHLALIG----CKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAG  237 (264)
Q Consensus       162 ~vFG~~L~~~l~~~~----~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vas  237 (264)
                      ++||+||++++..++    ..||.+|.+|++||+++|+++|||||++|+.+++++|++.+|.|.....+ ..+|+|+||+
T Consensus         1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~-~~~d~h~va~   79 (199)
T cd04390           1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFD-SDTDVHTVAS   79 (199)
T ss_pred             CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCcc-ccCCHHHHHH
Confidence            589999999997652    45999999999999999999999999999999999999999998642111 2469999999


Q ss_pred             HHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        238 VLKLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       238 lLK~yLReLPePLit~~ly~~~i~a~  263 (264)
                      +||.|||+||+||+|+++|+.|++++
T Consensus        80 lLK~fLReLPePLi~~~~y~~~~~~~  105 (199)
T cd04390          80 LLKLYLRELPEPVIPWAQYEDFLSCA  105 (199)
T ss_pred             HHHHHHHhCCCccCCHHHHHHHHHHH
Confidence            99999999999999999999999764

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r

>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

Probab=99.91  E-value=3.1e-24  Score=184.38  Aligned_cols=98  Identities=27%  Similarity=0.547  Sum_probs=89.5

Q ss_pred             CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccC-CCCCcCCCCHHHHHHHHHHH
Q psy16474        164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI-KFEDALEYDAHVLAGVLKLY  242 (264)
Q Consensus       164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~-~~~~~~~~D~h~vaslLK~y  242 (264)
                      ||+||++++. .+..||.+|.+|++||+++|+++|||||++|+..++++|++.+|++.. ++. ..++|+|+||++||.|
T Consensus         1 FG~pL~~~~~-~~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~-~~~~~~~~va~~lK~f   78 (185)
T cd04373           1 FGVPLANVVT-SEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLV-SKDFTVNAVAGALKSF   78 (185)
T ss_pred             CCCchHHHHh-CCCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcc-cccCcHHHHHHHHHHH
Confidence            9999999988 688999999999999999999999999999999999999999999752 322 2356999999999999


Q ss_pred             HhcCCCCCCChHhHHHHHHhh
Q psy16474        243 LRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       243 LReLPePLit~~ly~~~i~a~  263 (264)
                      ||+||+||+|+++|+.|++++
T Consensus        79 LreLPePlip~~~~~~~~~~~   99 (185)
T cd04373          79 FSELPDPLIPYSMHLELVEAA   99 (185)
T ss_pred             HhcCCchhccHHHHHHHHHHH
Confidence            999999999999999999875

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

Probab=99.91  E-value=3.9e-24  Score=187.88  Aligned_cols=101  Identities=31%  Similarity=0.446  Sum_probs=89.8

Q ss_pred             CCCCcHHHHHhhh-----CCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCC-CCCcCCCCHHHHH
Q psy16474        163 MFCQPLEEHLALI-----GCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIK-FEDALEYDAHVLA  236 (264)
Q Consensus       163 vFG~~L~~~l~~~-----~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~-~~~~~~~D~h~va  236 (264)
                      |||+||++++.++     +..||.+|.+|+++|+++|+.+|||||++|+.++|++|+..+|.+... ..+....|+|+||
T Consensus         1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va   80 (216)
T cd04391           1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA   80 (216)
T ss_pred             CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence            7999999999875     467999999999999999999999999999999999999999986321 1223356999999


Q ss_pred             HHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        237 GVLKLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       237 slLK~yLReLPePLit~~ly~~~i~a~  263 (264)
                      ++||.|||+||+||+|+++|+.|+++.
T Consensus        81 ~lLK~flReLPePLi~~~~~~~~~~~~  107 (216)
T cd04391          81 SLLKLFIRELPQPLLTVEYLPAFYSVQ  107 (216)
T ss_pred             HHHHHHHHhCCCccCCHHHHHHHHHHH
Confidence            999999999999999999999999864

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins

Probab=99.91  E-value=5.8e-24  Score=187.97  Aligned_cols=101  Identities=32%  Similarity=0.474  Sum_probs=88.8

Q ss_pred             CCCCcHHHHHhhhC---------------CCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccC--CCC
Q psy16474        163 MFCQPLEEHLALIG---------------CKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI--KFE  225 (264)
Q Consensus       163 vFG~~L~~~l~~~~---------------~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~--~~~  225 (264)
                      |||++|+++++..+               ..||.+|.+|++||+++|+++|||||++|+..++++|++.||.+..  ...
T Consensus         1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~   80 (225)
T cd04396           1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF   80 (225)
T ss_pred             CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence            79999999988654               3589999999999999999999999999999999999999998631  111


Q ss_pred             CcCCCCHHHHHHHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        226 DALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       226 ~~~~~D~h~vaslLK~yLReLPePLit~~ly~~~i~a~  263 (264)
                      +...+|+|+||++||.|||+||+||+|+++|+.|++++
T Consensus        81 ~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~  118 (225)
T cd04396          81 DWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPL  118 (225)
T ss_pred             CccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHH
Confidence            23467999999999999999999999999999998753

Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG1451|consensus

Probab=99.90  E-value=1.3e-24  Score=208.16  Aligned_cols=157  Identities=27%  Similarity=0.408  Sum_probs=130.5

Q ss_pred             ccc-chHHHHHHHhhhh--hhcC--CccCCCcceeeecccCHHHHHHHHHHHHhhhhchhhhhhhhhcCCCCCCCCCcHH
Q psy16474         95 KIA-FPIELCTRALCQV--RRLG--NFVQDSYTTITLCHASRDVIKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLE  169 (264)
Q Consensus        95 ~I~-~~~~~C~~rl~~~--~r~~--~~~~~~~~~~t~~~~s~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~vFG~~L~  169 (264)
                      +.+ +..++|+||-.++  +|+|  +++.++++++|+||+|++++..|+++|++.++.+..-       ..-...|   +
T Consensus       312 ~~~~~~lKsC~RRktdSIdKRFCFDve~~erpgviTmQALSE~drrlWmeAMDG~ep~Y~s~-------~~~~~~~---~  381 (812)
T KOG1451|consen  312 QTATFKLKSCSRRKTDSIDKRFCFDVEVEERPGVITMQALSEKDRRLWMEAMDGAEPSYTSG-------ENCSTYK---Q  381 (812)
T ss_pred             CcceEEehhhccCcccccccceeeeeeecccCCeeehHhhhhhHHHHHHHHhcCCCccccCc-------cccchhh---h
Confidence            444 9999999999998  9999  8889999999999999999999999999998765321       1111112   2


Q ss_pred             HHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHH-Hhhc---cCCCCCcCCCCHHHHHHHHHHHHhc
Q psy16474        170 EHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTC-LDAH---CIKFEDALEYDAHVLAGVLKLYLRE  245 (264)
Q Consensus       170 ~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~-ld~~---~~~~~~~~~~D~h~vaslLK~yLRe  245 (264)
                      ..++..|..+   |++||+.|+..|+.++|+||..|.+++|++|... ||..   +.+......||+.+|+|.||.|||.
T Consensus       382 ~qLd~iGF~f---vrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRn  458 (812)
T KOG1451|consen  382 TQLDDIGFEF---VRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRN  458 (812)
T ss_pred             hhhhhhhHHH---HHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHh
Confidence            2344456654   9999999999999999999999999999999774 4653   3455555679999999999999999


Q ss_pred             CCCCCCChHhHHHHHHhhC
Q psy16474        246 LPEPLLTYALYEDWLAAAR  264 (264)
Q Consensus       246 LPePLit~~ly~~~i~a~k  264 (264)
                      |||||||+++++.||.|||
T Consensus       459 LpEPLMTY~LHk~FI~AAK  477 (812)
T KOG1451|consen  459 LPEPLMTYELHKVFINAAK  477 (812)
T ss_pred             CCchhhHHHHHHHHHHHHh
Confidence            9999999999999999987

>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

Probab=99.90  E-value=1.5e-23  Score=180.56  Aligned_cols=101  Identities=37%  Similarity=0.647  Sum_probs=91.4

Q ss_pred             CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCC----CcCCCCHHHHHHHH
Q psy16474        164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFE----DALEYDAHVLAGVL  239 (264)
Q Consensus       164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~----~~~~~D~h~vaslL  239 (264)
                      ||++|++++.++|..||.+|.+|+++|+.+|+++|||||++|+..++++++..+|++.....    +....|+|+||++|
T Consensus         1 FG~~L~~~~~~~~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~L   80 (192)
T cd04398           1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLL   80 (192)
T ss_pred             CCCChHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999853221    11245999999999


Q ss_pred             HHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474        240 KLYLRELPEPLLTYALYEDWLAAAR  264 (264)
Q Consensus       240 K~yLReLPePLit~~ly~~~i~a~k  264 (264)
                      |.|||+||+||+|+++|+.|+++++
T Consensus        81 K~fLreLp~pLi~~~~~~~~~~~~~  105 (192)
T cd04398          81 KLFFRELPEPLLTKALSREFIEAAK  105 (192)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHh
Confidence            9999999999999999999998753

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

Probab=99.90  E-value=1.7e-23  Score=180.59  Aligned_cols=97  Identities=35%  Similarity=0.497  Sum_probs=89.9

Q ss_pred             CCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHH
Q psy16474        163 MFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLY  242 (264)
Q Consensus       163 vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~y  242 (264)
                      +||+||+..++  +..||.+|.+|+++|+++|+.+|||||++|+.+++++++..+|.|...  +...+|+|++|++||.|
T Consensus         1 ~FG~~L~~~~~--~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~--~~~~~~~~~va~~lK~f   76 (192)
T cd04402           1 LFGQPLSNICE--DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEV--DLKAEPVLLLASVLKDF   76 (192)
T ss_pred             CCCCcHHHHhC--CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCC--CCccCCHHHHHHHHHHH
Confidence            69999999998  788999999999999999999999999999999999999999998632  23467999999999999


Q ss_pred             HhcCCCCCCChHhHHHHHHhh
Q psy16474        243 LRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       243 LReLPePLit~~ly~~~i~a~  263 (264)
                      ||+||+||+|++.|+.|++++
T Consensus        77 lreLpepLi~~~~~~~~~~~~   97 (192)
T cd04402          77 LRNIPGSLLSSDLYEEWMSAL   97 (192)
T ss_pred             HHhCCCccCCHHHHHHHHHHH
Confidence            999999999999999999865

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG4270|consensus

Probab=99.90  E-value=4.6e-24  Score=207.91  Aligned_cols=150  Identities=35%  Similarity=0.506  Sum_probs=119.9

Q ss_pred             CCchhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhh-hhhhhhccCCCCCcccccHHHHHhhhCC
Q psy16474         16 FDESEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLP-QLNSLILVNPMKPMFCQPLEEHLALIGC   94 (264)
Q Consensus        16 ~~~~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~-~l~~~~~~~~~~~~~~~~l~~hl~~~g~   94 (264)
                      +.-+.|+|+|.++||+|.++|.+|. +++.+++.|.+|||+|+...+.++| .+.+......                  
T Consensus        99 ~kie~~~d~~~~~~~~f~~~~~~~~-f~~~~~e~q~~~~rrals~~~~vfgv~~~s~Q~s~~------------------  159 (577)
T KOG4270|consen   99 MKIEQPTDQRHADHVTFDRKEGEYL-FLGLPVEFQPDYHRRALSASETVFGVSTEAMQLSYD------------------  159 (577)
T ss_pred             CccccCcchhhhhhhhhhhhcchhh-hccchhhhccccccccccchhhhhcchHHhhhcccc------------------
Confidence            4568899999999999999999999 9999999999999999998888875 3322111110                  


Q ss_pred             cccchHHHHHHHhhhhhhcCCccCCCcceeeecccCHHHHHHHHHHHHhhhhchhhhhhhhhcCCCCCCCCCcHHHHHhh
Q psy16474         95 KIAFPIELCTRALCQVRRLGNFVQDSYTTITLCHASRDVIKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLAL  174 (264)
Q Consensus        95 ~I~~~~~~C~~rl~~~~r~~~~~~~~~~~~t~~~~s~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~vFG~~L~~~l~~  174 (264)
                                                                                       .+.=| +|+..++..
T Consensus       160 -----------------------------------------------------------------~~~n~-vp~i~~l~~  173 (577)
T KOG4270|consen  160 -----------------------------------------------------------------PRGNF-VPLILHLLQ  173 (577)
T ss_pred             -----------------------------------------------------------------cCCCc-chhhhHhhh
Confidence                                                                             11111 344444443


Q ss_pred             hCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCCCCCChH
Q psy16474        175 IGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYA  254 (264)
Q Consensus       175 ~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPePLit~~  254 (264)
                      .|           ..+.+.|++.|||||++|..++++.||+++|+|.+....  ..|+|++|++||.||||||+|+||++
T Consensus       174 ~~-----------~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~--~iDvH~~agllKayLRELPepvl~~n  240 (577)
T KOG4270|consen  174 SG-----------RLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQL--YIDVHCLAGLLKAYLRELPEPVLTFN  240 (577)
T ss_pred             hh-----------hhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccc--cCCHHHHHHHHHHHHHhCCCcCCCcc
Confidence            33           344578999999999999999999999999999764332  45999999999999999999999999


Q ss_pred             hHHHHHHhh
Q psy16474        255 LYEDWLAAA  263 (264)
Q Consensus       255 ly~~~i~a~  263 (264)
                      +|++|++++
T Consensus       241 L~~e~~qv~  249 (577)
T KOG4270|consen  241 LYKEWTQVQ  249 (577)
T ss_pred             cCHHHHHHH
Confidence            999999764

>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

Probab=99.90  E-value=2.1e-23  Score=179.59  Aligned_cols=98  Identities=35%  Similarity=0.513  Sum_probs=88.0

Q ss_pred             CCCcHHHHHhhh-----CCCCcHHHHHHHHHHH-hcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHH
Q psy16474        164 FCQPLEEHLALI-----GCKIAFPIELCTRALC-QIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAG  237 (264)
Q Consensus       164 FG~~L~~~l~~~-----~~~iP~vv~~ci~~L~-~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vas  237 (264)
                      ||+||++++.++     +..||.+|..|+++|. .+|+++|||||++|+.+++++++..+|.|..++  ....|+|+||+
T Consensus         1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~--~~~~d~h~va~   78 (187)
T cd04389           1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPL--SGLEDPHVPAS   78 (187)
T ss_pred             CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCc--cccCCHHHHHH
Confidence            899999999775     3469999999999986 578999999999999999999999999987543  23459999999


Q ss_pred             HHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        238 VLKLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       238 lLK~yLReLPePLit~~ly~~~i~a~  263 (264)
                      +||.|||+||+||+|+++|++|++++
T Consensus        79 lLK~fLReLpePli~~~~~~~~i~~~  104 (187)
T cd04389          79 LLKLWLRELEEPLIPDALYQQCISAS  104 (187)
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHhh
Confidence            99999999999999999999999864

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

Probab=99.89  E-value=3.4e-23  Score=179.23  Aligned_cols=101  Identities=28%  Similarity=0.536  Sum_probs=90.2

Q ss_pred             CCCCcHHHHHhhh-CCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCC--CCCcCCCCHHHHHHHH
Q psy16474        163 MFCQPLEEHLALI-GCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIK--FEDALEYDAHVLAGVL  239 (264)
Q Consensus       163 vFG~~L~~~l~~~-~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~--~~~~~~~D~h~vaslL  239 (264)
                      +||+||++++... +..||.+|+.|+.+|+.+|+++|||||++|+..++++|+..+|+|...  ..+...+|+|++|++|
T Consensus         1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~ll   80 (196)
T cd04395           1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLL   80 (196)
T ss_pred             CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHH
Confidence            5999999988764 477999999999999999999999999999999999999999998643  2223346999999999


Q ss_pred             HHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        240 KLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       240 K~yLReLPePLit~~ly~~~i~a~  263 (264)
                      |.|||+||+||+|.++|++|++++
T Consensus        81 K~flr~Lp~pli~~~~~~~~i~~~  104 (196)
T cd04395          81 KSFFRKLPEPLFTNELYPDFIEAN  104 (196)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHH
Confidence            999999999999999999999875

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

Probab=99.89  E-value=5.2e-23  Score=176.81  Aligned_cols=98  Identities=35%  Similarity=0.569  Sum_probs=88.9

Q ss_pred             CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHH
Q psy16474        164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYL  243 (264)
Q Consensus       164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yL  243 (264)
                      ||+||+.++. .+..||.+|..|++||+.+|+.+|||||++|+.++++++++.+|.+... .+...+|+|+||++||.||
T Consensus         1 FG~~L~~~~~-~~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~-~~~~~~~~~~va~~LK~fl   78 (186)
T cd04377           1 FGVSLSSLTS-EDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDS-VNLEDYPIHVITSVLKQWL   78 (186)
T ss_pred             CCCCHHHHHh-CCCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcc-cCcccCCHHHHHHHHHHHH
Confidence            9999998875 6788999999999999999999999999999999999999999998422 2344679999999999999


Q ss_pred             hcCCCCCCChHhHHHHHHhh
Q psy16474        244 RELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       244 ReLPePLit~~ly~~~i~a~  263 (264)
                      |+||+||+|+++|+.|++++
T Consensus        79 r~LpepLi~~~~~~~~~~~~   98 (186)
T cd04377          79 RELPEPLMTFELYENFLRAM   98 (186)
T ss_pred             HcCCCccCCHHHHHHHHHHH
Confidence            99999999999999999764

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

Probab=99.89  E-value=5e-23  Score=177.42  Aligned_cols=101  Identities=37%  Similarity=0.568  Sum_probs=88.9

Q ss_pred             CCCCcHHHHHhhh-----CCCCcHHHHHHHHHHHhcC-CCCCCcccccCCHHHHHHHHHHHhhcc-CCCCC-cCCCCHHH
Q psy16474        163 MFCQPLEEHLALI-----GCKIAFPIELCTRALCQIG-MDEEGLFRVTGGASKVKRLKTCLDAHC-IKFED-ALEYDAHV  234 (264)
Q Consensus       163 vFG~~L~~~l~~~-----~~~iP~vv~~ci~~L~~~G-l~~eGIFR~~G~~~~v~~Lk~~ld~~~-~~~~~-~~~~D~h~  234 (264)
                      |||+||+++++.+     +..||.+|.+|++||+++| +.+|||||++|+.+.+++|++.+|.+. +++.. ...+|+|+
T Consensus         1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~   80 (190)
T cd04400           1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT   80 (190)
T ss_pred             CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence            7999999999874     4579999999999999987 899999999999999999999999974 23221 23469999


Q ss_pred             HHHHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        235 LAGVLKLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       235 vaslLK~yLReLPePLit~~ly~~~i~a~  263 (264)
                      ||++||.|||+||+||+|+++|+.|++++
T Consensus        81 va~lLK~flreLP~PLi~~~~~~~~~~~~  109 (190)
T cd04400          81 VAGLLKLYLRELPTLILGGELHNDFKRLV  109 (190)
T ss_pred             HHHHHHHHHHhCCcccCCHHHHHHHHHHH
Confidence            99999999999999999999999998764

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

Probab=99.89  E-value=5.4e-23  Score=177.05  Aligned_cols=101  Identities=31%  Similarity=0.386  Sum_probs=89.9

Q ss_pred             CCCCCcHHHHHhhh--CCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHH
Q psy16474        162 PMFCQPLEEHLALI--GCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVL  239 (264)
Q Consensus       162 ~vFG~~L~~~l~~~--~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslL  239 (264)
                      ++||+||+++.++.  +..||.+|..|++||+++|+++|||||++|+..++++++..+|.|... .....+|+|++|++|
T Consensus         1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~-~~~~~~d~~~va~~l   79 (189)
T cd04393           1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEV-DLSKEADVCSAASLL   79 (189)
T ss_pred             CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCC-CccccCCHHHHHHHH
Confidence            58999999998763  557999999999999999999999999999999999999999998632 111247999999999


Q ss_pred             HHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        240 KLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       240 K~yLReLPePLit~~ly~~~i~a~  263 (264)
                      |.|||+||+||+|+++|+.|+++.
T Consensus        80 K~flr~Lp~pLi~~~~~~~l~~~~  103 (189)
T cd04393          80 RLFLQELPEGLIPASLQIRLMQLY  103 (189)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHH
Confidence            999999999999999999998764

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.

>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

Probab=99.89  E-value=7.5e-23  Score=178.09  Aligned_cols=97  Identities=32%  Similarity=0.383  Sum_probs=87.2

Q ss_pred             CCCCcHHHHHhh---hCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHH
Q psy16474        163 MFCQPLEEHLAL---IGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVL  239 (264)
Q Consensus       163 vFG~~L~~~l~~---~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslL  239 (264)
                      |||+||+.++..   ++..||.+|.+|++||++ |+++|||||++|+.+++++|+..+|+|....   ..+++|+||++|
T Consensus         1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~---~~~~~~~vaslL   76 (202)
T cd04394           1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL---SSALPCDVAGLL   76 (202)
T ss_pred             CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc---cccCHHHHHHHH
Confidence            799999998764   367899999999999986 6999999999999999999999999986422   246899999999


Q ss_pred             HHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        240 KLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       240 K~yLReLPePLit~~ly~~~i~a~  263 (264)
                      |.|||+||+||+|+++|+.|+++.
T Consensus        77 K~flReLPePLi~~~~~~~~~~~~  100 (202)
T cd04394          77 KQFFRELPEPLLPYDLHEALLKAQ  100 (202)
T ss_pred             HHHHhcCCCcCCCHHHHHHHHHHH
Confidence            999999999999999999999875

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins

Probab=99.88  E-value=9.7e-23  Score=178.69  Aligned_cols=99  Identities=21%  Similarity=0.255  Sum_probs=87.2

Q ss_pred             CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcC--CCCC----CcccccCCHHHHHHHHHHHhhccCC-CCC--cCCCCHHH
Q psy16474        164 FCQPLEEHLALIGCKIAFPIELCTRALCQIG--MDEE----GLFRVTGGASKVKRLKTCLDAHCIK-FED--ALEYDAHV  234 (264)
Q Consensus       164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~G--l~~e----GIFR~~G~~~~v~~Lk~~ld~~~~~-~~~--~~~~D~h~  234 (264)
                      ||+||+.++..++..||.+|.+|++||+.+|  +..+    ||||++|+.+.+++||+++|.|... ...  ...+|+|+
T Consensus         1 FGv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~   80 (212)
T cd04399           1 FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPST   80 (212)
T ss_pred             CCCcHHHHHhhcCCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHH
Confidence            9999999999999999999999999999865  4333    9999999999999999999998532 211  34579999


Q ss_pred             HHHHHHHHHhcCCCCCCChHhHHHHHHh
Q psy16474        235 LAGVLKLYLRELPEPLLTYALYEDWLAA  262 (264)
Q Consensus       235 vaslLK~yLReLPePLit~~ly~~~i~a  262 (264)
                      ||++||+||||||+||+|+++|+.|+++
T Consensus        81 va~~LK~ylReLPepL~~~~~y~~~~~~  108 (212)
T cd04399          81 VASVLKLYLLELPDSLIPHDIYDLIRSL  108 (212)
T ss_pred             HHHHHHHHHHHCCCccCCHHHHHHHHHH
Confidence            9999999999999999999999999865

Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

Probab=99.88  E-value=2.8e-22  Score=173.29  Aligned_cols=102  Identities=29%  Similarity=0.361  Sum_probs=90.8

Q ss_pred             CCCCCCCcHHHHHhhhC--CCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCC-CHHHHH
Q psy16474        160 MKPMFCQPLEEHLALIG--CKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY-DAHVLA  236 (264)
Q Consensus       160 ~~~vFG~~L~~~l~~~~--~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~-D~h~va  236 (264)
                      +..+||+||+.++.+.+  ..||.+|..|+++|+++|+++|||||++|+..+++++++.+|.|...  +...+ |+|++|
T Consensus         2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~--~~~~~~d~~~va   79 (195)
T cd04404           2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPV--DFDQYEDVHLPA   79 (195)
T ss_pred             CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCC--CcccccCHHHHH
Confidence            35799999999988754  67999999999999999999999999999999999999999998521  22234 999999


Q ss_pred             HHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        237 GVLKLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       237 slLK~yLReLPePLit~~ly~~~i~a~  263 (264)
                      ++||.|||+||+||+|.++|+.|+++.
T Consensus        80 ~~LK~~lr~Lp~pLi~~~~~~~l~~~~  106 (195)
T cd04404          80 VILKTFLRELPEPLLTFDLYDDIVGFL  106 (195)
T ss_pred             HHHHHHHHhCCCccCCHHHHHHHHHHH
Confidence            999999999999999999999998753

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

Probab=99.88  E-value=3.3e-22  Score=171.58  Aligned_cols=98  Identities=35%  Similarity=0.589  Sum_probs=86.4

Q ss_pred             CCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCC-CcCCCCHHHHHHHHHHHH
Q psy16474        165 CQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFE-DALEYDAHVLAGVLKLYL  243 (264)
Q Consensus       165 G~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~-~~~~~D~h~vaslLK~yL  243 (264)
                      |.+|+.. +.++..||.+|.+|++||+++|+.+|||||++|+.+++++|+..++.+..... ....+|+|+||++||.||
T Consensus         2 ~~~l~~~-~~~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yL   80 (184)
T cd04385           2 GPALEDQ-QLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFL   80 (184)
T ss_pred             CccHHHh-hhCCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHH
Confidence            7778766 44778999999999999999999999999999999999999999988643322 234579999999999999


Q ss_pred             hcCCCCCCChHhHHHHHHhh
Q psy16474        244 RELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       244 ReLPePLit~~ly~~~i~a~  263 (264)
                      |+||+||||+++|+.|++++
T Consensus        81 reLP~pLi~~~~~~~~~~~~  100 (184)
T cd04385          81 RDLPDPLLTSELHAEWIEAA  100 (184)
T ss_pred             HhCCCccCCHHHHHHHHHHH
Confidence            99999999999999999875

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

Probab=99.87  E-value=2e-22  Score=174.33  Aligned_cols=95  Identities=34%  Similarity=0.513  Sum_probs=82.8

Q ss_pred             HHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCC
Q psy16474        169 EEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPE  248 (264)
Q Consensus       169 ~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPe  248 (264)
                      .+.-..++..||.+|.+|+++|+++|+.+|||||++|+.++|++|++.+|.|... .+...+|+|+||++||.|||+||+
T Consensus         7 ~~~~~~~~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~-~~~~~~d~h~vaslLK~fLReLPe   85 (193)
T cd04382           7 ADFDPSTSPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTV-PNLSKVDIHVICGCLKDFLRSLKE   85 (193)
T ss_pred             cccCCCCCCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCC-cccccCCHHHHHHHHHHHHHhCCC
Confidence            3333456788999999999999999999999999999999999999999987531 223346999999999999999999


Q ss_pred             CCCChHhHHHHHHhhC
Q psy16474        249 PLLTYALYEDWLAAAR  264 (264)
Q Consensus       249 PLit~~ly~~~i~a~k  264 (264)
                      ||+|+++|+.|+++++
T Consensus        86 PLi~~~~y~~~~~~~~  101 (193)
T cd04382          86 PLITFALWKEFMEAAE  101 (193)
T ss_pred             cCCCHHHHHHHHHHHH
Confidence            9999999999998763

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway

>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase)

Probab=99.87  E-value=4.3e-22  Score=172.91  Aligned_cols=94  Identities=24%  Similarity=0.413  Sum_probs=80.0

Q ss_pred             cHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcC
Q psy16474        167 PLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLREL  246 (264)
Q Consensus       167 ~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReL  246 (264)
                      +|.+.+. ....+|.+|.+|+++||++|+++|||||++|+.+ +.+|++.||.+.... +...+|+|+||++||.|||+|
T Consensus         4 ~~~~~~~-~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~-d~~~~dv~~va~~LK~ylReL   80 (200)
T cd04388           4 DLTEQFS-PPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASV-DLEQFDVAALADALKRYLLDL   80 (200)
T ss_pred             cHHHHhC-CCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCC-CcccccHHHHHHHHHHHHHhC
Confidence            3444443 3467999999999999999999999999999875 789999999864322 344679999999999999999


Q ss_pred             CCCCCChHhHHHHHHhh
Q psy16474        247 PEPLLTYALYEDWLAAA  263 (264)
Q Consensus       247 PePLit~~ly~~~i~a~  263 (264)
                      |+||||+++|++|++++
T Consensus        81 PePLip~~~y~~fi~~~   97 (200)
T cd04388          81 PNPVIPAPVYSEMISRA   97 (200)
T ss_pred             CCccCCHHHHHHHHHHH
Confidence            99999999999999986

This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p

>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

Probab=99.86  E-value=1.5e-21  Score=170.43  Aligned_cols=88  Identities=27%  Similarity=0.499  Sum_probs=79.4

Q ss_pred             hCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCCCCCChH
Q psy16474        175 IGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYA  254 (264)
Q Consensus       175 ~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPePLit~~  254 (264)
                      .++.||.+|.+|++||+++|+++|||||++|+.+++++|+..+|.|.... ....+|+|+||++||.|||+||+||+|++
T Consensus         5 ~~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~-~~~~~~~h~va~lLK~fLReLPePLi~~~   83 (206)
T cd04376           5 IARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVV-LDENHSVHDVAALLKEFFRDMPDPLLPRE   83 (206)
T ss_pred             CCCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCC-CcccCCHHHHHHHHHHHHHhCCCccCCHH
Confidence            35689999999999999999999999999999999999999999986321 12356999999999999999999999999


Q ss_pred             hHHHHHHhh
Q psy16474        255 LYEDWLAAA  263 (264)
Q Consensus       255 ly~~~i~a~  263 (264)
                      +|+.|++++
T Consensus        84 ~y~~~i~~~   92 (206)
T cd04376          84 LYTAFIGTA   92 (206)
T ss_pred             HHHHHHHHH
Confidence            999999875

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins

Probab=99.84  E-value=9.4e-21  Score=166.92  Aligned_cols=101  Identities=30%  Similarity=0.411  Sum_probs=89.7

Q ss_pred             CCCCCCCcHHHHHhhh----------------------CCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHH----HHHH
Q psy16474        160 MKPMFCQPLEEHLALI----------------------GCKIAFPIELCTRALCQIGMDEEGLFRVTGGASK----VKRL  213 (264)
Q Consensus       160 ~~~vFG~~L~~~l~~~----------------------~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~----v~~L  213 (264)
                      .+++||.+|+++...+                      ...||.+|.+|+++|+++|+.+|||||++|+.+.    ++++
T Consensus         9 ~~s~fG~sl~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l   88 (220)
T cd04380           9 LPSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVPLSIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEI   88 (220)
T ss_pred             ecccccccHHHHhcCCchHhhccccccccccCCCCCCCccccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHH
Confidence            4689999999987632                      1359999999999999999999999999999999    9999


Q ss_pred             HHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        214 KTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       214 k~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPePLit~~ly~~~i~a~  263 (264)
                      ++.+|+|....   ...|+|++|++||.|||+|||||||+++|+.|++++
T Consensus        89 ~~~ld~~~~~~---~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~  135 (220)
T cd04380          89 RDALDTGSPFN---SPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAV  135 (220)
T ss_pred             HHHHhCCCCCC---CCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHh
Confidence            99999985322   357999999999999999999999999999999873

OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas

>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

Probab=99.84  E-value=7.1e-21  Score=166.44  Aligned_cols=91  Identities=37%  Similarity=0.517  Sum_probs=77.4

Q ss_pred             CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccC-CCCCcCCCCHHHHHHHHHHH
Q psy16474        164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI-KFEDALEYDAHVLAGVLKLY  242 (264)
Q Consensus       164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~-~~~~~~~~D~h~vaslLK~y  242 (264)
                      ||-+|.+-    |..   .|.+||+||++ |+++|||||++|+.+++++|++.+|+|.. ++ ....+|+|+||++||.|
T Consensus         1 ~~~~~~~~----~~~---~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~-~~~~~~~h~va~lLK~f   71 (208)
T cd04392           1 FGAPLTEE----GIA---QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDL-ESGGFHAHDCATVLKGF   71 (208)
T ss_pred             CCCCcccc----ccH---HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCc-ccccCCHHHHHHHHHHH
Confidence            67776643    222   58999999998 99999999999999999999999999853 33 22357999999999999


Q ss_pred             HhcCCCCCCChHhHHHHHHhh
Q psy16474        243 LRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       243 LReLPePLit~~ly~~~i~a~  263 (264)
                      ||+||+||+|+++|+.|++++
T Consensus        72 lReLPePLi~~~~y~~~~~i~   92 (208)
T cd04392          72 LGELPEPLLTHAHYPAHLQIA   92 (208)
T ss_pred             HHhCCCccCCHHHHHHHHHHH
Confidence            999999999999999998764

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG2200|consensus

Probab=99.81  E-value=5.7e-20  Score=176.74  Aligned_cols=141  Identities=26%  Similarity=0.352  Sum_probs=107.5

Q ss_pred             ceeeecccCH-HHHHHHHHHHHhhhhchhhhhhh-----hh--cCCCCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhc
Q psy16474        122 TTITLCHASR-DVIKQHEEALLHLNETLPQLNSL-----IL--VNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQI  193 (264)
Q Consensus       122 ~~~t~~~~s~-~~~k~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~  193 (264)
                      ++..+-..+. ++.+.+.-++-.+++.+....-.     .+  ...++.||||||..+++++|.++|.+|++.+.||+++
T Consensus       251 ~s~~I~d~~~~qm~~~~~~SLieLTA~~d~~~~~lK~kr~kk~d~kd~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~  330 (674)
T KOG2200|consen  251 GSTRIGDQSAQQMKKLHHLSLIELTALMDILGIQLKRKRAKKVDGKDGGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRER  330 (674)
T ss_pred             CCcccCCcCHHHHhhhhhhHHHHHHHHHHHhCchhhhhcccCCccCCCceeecCceeeeccCCCcCcHHHHHHHHHHHHh
Confidence            3344444444 44445555555555543322211     11  1235689999999999999999999999999999999


Q ss_pred             CCCCCCcccccCCHHHHHHHHHHHhhccCCC-CCcCCCCHHHHHHHHHHHHhcCCCCCCChHhHHHHHHh
Q psy16474        194 GMDEEGLFRVTGGASKVKRLKTCLDAHCIKF-EDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAA  262 (264)
Q Consensus       194 Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~-~~~~~~D~h~vaslLK~yLReLPePLit~~ly~~~i~a  262 (264)
                      |++++||||++|..++|+.|++.++.....- ...+....|++|++||+|||+||+||||.++-+.|++.
T Consensus       331 ~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdlLKqffRdLPePL~t~k~~~aF~~i  400 (674)
T KOG2200|consen  331 GLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADLLKQFFRDLPEPLFTVKYSEAFAQI  400 (674)
T ss_pred             CccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHHHHHHHHhCCcccchhhHHHHHHHH
Confidence            9999999999999999999999998853321 12223479999999999999999999999999999875

>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

Probab=99.81  E-value=6.9e-20  Score=159.66  Aligned_cols=84  Identities=38%  Similarity=0.699  Sum_probs=72.2

Q ss_pred             cHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHH-Hhhcc-----CCCCCcCCCCHHHHHHHHHHHHhcCCCCCCCh
Q psy16474        180 AFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTC-LDAHC-----IKFEDALEYDAHVLAGVLKLYLRELPEPLLTY  253 (264)
Q Consensus       180 P~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~-ld~~~-----~~~~~~~~~D~h~vaslLK~yLReLPePLit~  253 (264)
                      +.+|.+|+++|+++|+.+|||||++|+.++|++|+.. +|.+.     +++.. ..+|+|+||++||.|||+||+||+|+
T Consensus        29 ~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~-~~~d~h~va~lLK~fLReLPePLi~~  107 (203)
T cd04374          29 FKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDN-SEWEIKTITSALKTYLRNLPEPLMTY  107 (203)
T ss_pred             HHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCcccccccc-ccccHHHHHHHHHHHHHcCCCCcCCH
Confidence            4579999999999999999999999999999999875 66642     22221 15799999999999999999999999


Q ss_pred             HhHHHHHHhhC
Q psy16474        254 ALYEDWLAAAR  264 (264)
Q Consensus       254 ~ly~~~i~a~k  264 (264)
                      ++|+.|+++++
T Consensus       108 ~~y~~~i~~~~  118 (203)
T cd04374         108 ELHNDFINAAK  118 (203)
T ss_pred             HHHHHHHHHHh
Confidence            99999998763

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG4269|consensus

Probab=99.77  E-value=3.3e-19  Score=177.40  Aligned_cols=101  Identities=35%  Similarity=0.577  Sum_probs=86.6

Q ss_pred             CCCCCCcHHHHH----hhhCCCCcHHHHHHHHHHH-hcCCCCCCcccccCCHHHHHHHHHHHhhc-cCCCCCc-CCCCHH
Q psy16474        161 KPMFCQPLEEHL----ALIGCKIAFPIELCTRALC-QIGMDEEGLFRVTGGASKVKRLKTCLDAH-CIKFEDA-LEYDAH  233 (264)
Q Consensus       161 ~~vFG~~L~~~l----~~~~~~iP~vv~~ci~~L~-~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~-~~~~~~~-~~~D~h  233 (264)
                      ..|||.+|..-+    .++.-.+|.||.+|++||+ .+|+++|||||++|+...|+.|++.||.+ +.++... .+.|+|
T Consensus       897 TgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~dVn  976 (1112)
T KOG4269|consen  897 TGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSEMDVN  976 (1112)
T ss_pred             ceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhccccccHH
Confidence            369997665443    3345679999999999999 79999999999999999999999999998 4444432 245999


Q ss_pred             HHHHHHHHHHhcCCCCCCChHhHHHHHH
Q psy16474        234 VLAGVLKLYLRELPEPLLTYALYEDWLA  261 (264)
Q Consensus       234 ~vaslLK~yLReLPePLit~~ly~~~i~  261 (264)
                      +|||+||+|||+||+||++.++|..|..
T Consensus       977 ~IaGlLKLYlR~LP~~Ll~de~~~~F~~ 1004 (1112)
T KOG4269|consen  977 AIAGLLKLYLRELPEPLLTDEMYPLFEE 1004 (1112)
T ss_pred             HHHHHHHHHHHhCCccccchhhhHHHHh
Confidence            9999999999999999999999999975

>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases

Probab=99.76  E-value=3.6e-18  Score=144.08  Aligned_cols=86  Identities=47%  Similarity=0.789  Sum_probs=77.9

Q ss_pred             CCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCCCCCChHhHH
Q psy16474        178 KIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYE  257 (264)
Q Consensus       178 ~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPePLit~~ly~  257 (264)
                      .||.++..|+++|+++|+++|||||++|+..++++++..+|.+.........+|+|++|++||.|||+||+||+|.+.|+
T Consensus         2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~   81 (174)
T smart00324        2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE   81 (174)
T ss_pred             CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence            58999999999999999999999999999999999999999986422123467999999999999999999999999999


Q ss_pred             HHHHhh
Q psy16474        258 DWLAAA  263 (264)
Q Consensus       258 ~~i~a~  263 (264)
                      .|+++.
T Consensus        82 ~~~~~~   87 (174)
T smart00324       82 EFIEAA   87 (174)
T ss_pred             HHHHHH
Confidence            999865

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.

>KOG1450|consensus

Probab=99.75  E-value=3.6e-18  Score=167.70  Aligned_cols=104  Identities=30%  Similarity=0.549  Sum_probs=94.4

Q ss_pred             CCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhcc-CCCCCcCCCCHHHHHHH
Q psy16474        160 MKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGV  238 (264)
Q Consensus       160 ~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~-~~~~~~~~~D~h~vasl  238 (264)
                      ...+||++|+.++++.+..||.+|.+|+..|+..|++.+||||++|+...|++||.++|... .++.+..+.|+|+|+++
T Consensus       453 ~~~vFGs~Lealc~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~~~d~d~~l~l~~~~~~dihai~ga  532 (650)
T KOG1450|consen  453 FDKVFGSPLEALCQRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLREQSDQDNSLDLADDRWDDIHAITGA  532 (650)
T ss_pred             cCcccCccHHHHhhccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHHhcCccccccccccchhHHHHHHHH
Confidence            35799999999999999999999999999999999999999999999999999999999654 34433333499999999


Q ss_pred             HHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        239 LKLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       239 LK~yLReLPePLit~~ly~~~i~a~  263 (264)
                      ||.||||||+||++..+..+|..|.
T Consensus       533 lK~ffreLpdpL~p~~l~~~f~~a~  557 (650)
T KOG1450|consen  533 LKTFFRELPDPLFPKALSKDFTVAL  557 (650)
T ss_pred             HHHHHHhcCCcccChhHhHHHHHHh
Confidence            9999999999999999999999875

>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation

Probab=99.74  E-value=1.1e-17  Score=137.69  Aligned_cols=84  Identities=37%  Similarity=0.655  Sum_probs=74.5

Q ss_pred             cHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCCCCCChHhHHHH
Q psy16474        180 AFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDW  259 (264)
Q Consensus       180 P~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPePLit~~ly~~~  259 (264)
                      |.+|..|+++|+++|+.++||||++|+..++++|++.++.+.........+|+|++|++||.|||+||+||++.++|+.|
T Consensus         1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~   80 (151)
T PF00620_consen    1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF   80 (151)
T ss_dssp             EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence            78999999999999999999999999999999999999998753223456799999999999999999999999999999


Q ss_pred             HHhh
Q psy16474        260 LAAA  263 (264)
Q Consensus       260 i~a~  263 (264)
                      +++.
T Consensus        81 ~~~~   84 (151)
T PF00620_consen   81 IAAS   84 (151)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            9653

Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....

>KOG4407|consensus

Probab=99.73  E-value=2.8e-18  Score=175.11  Aligned_cols=106  Identities=27%  Similarity=0.487  Sum_probs=91.8

Q ss_pred             CCCCCCCCcHHHHHh-hhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccC----CCCCcCCCCHH
Q psy16474        159 PMKPMFCQPLEEHLA-LIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI----KFEDALEYDAH  233 (264)
Q Consensus       159 ~~~~vFG~~L~~~l~-~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~----~~~~~~~~D~h  233 (264)
                      ...++|||+|.+.-. ..+.-||.+|+.|+..+|.+||.+.||||++||...|..|++.++.+..    +..+..+.|++
T Consensus      1153 ~~~~~~GVrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvN 1232 (1973)
T KOG4407|consen 1153 APQPVLGVRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVN 1232 (1973)
T ss_pred             CcCcccccccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhH
Confidence            345799999998743 3567799999999999999999999999999999999999999999842    22232233999


Q ss_pred             HHHHHHHHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474        234 VLAGVLKLYLRELPEPLLTYALYEDWLAAAR  264 (264)
Q Consensus       234 ~vaslLK~yLReLPePLit~~ly~~~i~a~k  264 (264)
                      +|.+|||.|||.|||||||.++|..||+|-|
T Consensus      1233 VVSSLLK~F~RkLPepL~t~~~Y~~FIeAnr 1263 (1973)
T KOG4407|consen 1233 VVSSLLKMFLRKLPEPLLTDKLYPFFIEANR 1263 (1973)
T ss_pred             HHHHHHHHHHHhCCcccccccchhhhhhhcc
Confidence            9999999999999999999999999999864

>KOG2710|consensus

Probab=99.73  E-value=1.1e-17  Score=157.76  Aligned_cols=106  Identities=30%  Similarity=0.532  Sum_probs=91.4

Q ss_pred             CCCCCCCCcHHHHHhhh-------C-----CCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhcc---CC
Q psy16474        159 PMKPMFCQPLEEHLALI-------G-----CKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHC---IK  223 (264)
Q Consensus       159 ~~~~vFG~~L~~~l~~~-------~-----~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~---~~  223 (264)
                      ....+|++++.+.+...       |     ..||.+|.+|..||.++|+.+.||||++|+..+|++|+..||++.   .+
T Consensus        62 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~  141 (412)
T KOG2710|consen   62 LDGLLLKVPLELSSKVASAETRLQSLNPGEGQIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGID  141 (412)
T ss_pred             cceeeeccchhhhhhhhhccchhccCCccceeCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCcccccc
Confidence            45567777777765421       1     349999999999999999999999999999999999999999974   34


Q ss_pred             CCCcCCCCHHHHHHHHHHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474        224 FEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR  264 (264)
Q Consensus       224 ~~~~~~~D~h~vaslLK~yLReLPePLit~~ly~~~i~a~k  264 (264)
                      ..+...+.+|++|++||.|||+||+||||.+||+.|+.+++
T Consensus       142 ~~~~e~~nvHDvAaLLK~flr~lp~pLLP~~LY~~f~~p~k  182 (412)
T KOG2710|consen  142 VNDWEDFNVHDVAALLKEFLRDLPDPLLPLELYESFINPAK  182 (412)
T ss_pred             ccccccccHHHHHHHHHHHHHhCCcccCCHHHHHHHhhhhc
Confidence            55566679999999999999999999999999999999875

>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

Probab=99.71  E-value=4.4e-17  Score=135.73  Aligned_cols=83  Identities=45%  Similarity=0.750  Sum_probs=76.0

Q ss_pred             cHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCCCCCChHhHHHH
Q psy16474        180 AFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDW  259 (264)
Q Consensus       180 P~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPePLit~~ly~~~  259 (264)
                      |.+|..|+++|+++|+.++||||++|+..++++|++.++.+.... ....+|+|++|++||.|||+||+||+|.++|+.|
T Consensus         1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~-~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~   79 (169)
T cd00159           1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDID-DLEDYDVHDVASLLKLYLRELPEPLIPFELYDEF   79 (169)
T ss_pred             ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCc-cccccCHHHHHHHHHHHHHcCCCccCCHHHHHHH
Confidence            789999999999999999999999999999999999999986432 3346799999999999999999999999999999


Q ss_pred             HHhh
Q psy16474        260 LAAA  263 (264)
Q Consensus       260 i~a~  263 (264)
                      ++++
T Consensus        80 ~~~~   83 (169)
T cd00159          80 IELA   83 (169)
T ss_pred             HHHH
Confidence            9874

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.

>KOG1453|consensus

Probab=99.62  E-value=7.7e-16  Score=159.54  Aligned_cols=102  Identities=30%  Similarity=0.568  Sum_probs=94.6

Q ss_pred             CCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHH
Q psy16474        162 PMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKL  241 (264)
Q Consensus       162 ~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~  241 (264)
                      +.||..|.+.+...+..||.++.+|+.+|+.+|+.+|||||++|..++++.|...|+.+. ........|+|+++++||.
T Consensus       601 ~~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~-~~v~l~~~dih~vtsVlK~  679 (918)
T KOG1453|consen  601 PLFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGD-ALVLLSTPDIHAVTSVLKL  679 (918)
T ss_pred             ccccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCc-cceecCCCChHHHHHHHHH
Confidence            389999999999999999999999999999999999999999999999999999999986 2334456799999999999


Q ss_pred             HHhcCCCCCCChHhHHHHHHhhC
Q psy16474        242 YLRELPEPLLTYALYEDWLAAAR  264 (264)
Q Consensus       242 yLReLPePLit~~ly~~~i~a~k  264 (264)
                      |||+||+|||++.+|+.|+.++|
T Consensus       680 yLr~Lp~pIi~f~~y~~~~~~~~  702 (918)
T KOG1453|consen  680 YLRKLPEPIIIFNLYDEFLSAAK  702 (918)
T ss_pred             HHHhccccccccchHHHHHhhhc
Confidence            99999999999999999999875

>KOG3564|consensus

Probab=99.58  E-value=5.1e-15  Score=139.99  Aligned_cols=91  Identities=33%  Similarity=0.453  Sum_probs=81.2

Q ss_pred             hhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCCCCCC
Q psy16474        173 ALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLT  252 (264)
Q Consensus       173 ~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPePLit  252 (264)
                      .....-||.+|..|+.+||.+|+.+|||||++|....+++|+..|-+|.. ......-|+|+++++||.|||+|-|||||
T Consensus       356 ~s~aPMIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt-~p~~g~~Dihvic~~lKdFLR~LkePLip  434 (604)
T KOG3564|consen  356 PSTAPMIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKT-TPHLGNDDIHVICCCLKDFLRNLKEPLIP  434 (604)
T ss_pred             ccccccchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCC-CCccCCcchhHHHHHHHHHHHhccccccc
Confidence            33445699999999999999999999999999999999999999999875 23344459999999999999999999999


Q ss_pred             hHhHHHHHHhhC
Q psy16474        253 YALYEDWLAAAR  264 (264)
Q Consensus       253 ~~ly~~~i~a~k  264 (264)
                      +.+..+|++|++
T Consensus       435 ~~~~rdf~eAa~  446 (604)
T KOG3564|consen  435 FRLRRDFMEAAE  446 (604)
T ss_pred             chHHHHHHHHhc
Confidence            999999999974

>KOG4406|consensus

Probab=99.56  E-value=2.8e-15  Score=140.05  Aligned_cols=99  Identities=32%  Similarity=0.466  Sum_probs=88.7

Q ss_pred             CCCCCCCcHHHHHhhh--CCCCcHHHHHHHHHHHhcC-CCCCCcccccCCHHHHHHHHHHHhhcc-CCCCCcCCC-CHHH
Q psy16474        160 MKPMFCQPLEEHLALI--GCKIAFPIELCTRALCQIG-MDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEY-DAHV  234 (264)
Q Consensus       160 ~~~vFG~~L~~~l~~~--~~~iP~vv~~ci~~L~~~G-l~~eGIFR~~G~~~~v~~Lk~~ld~~~-~~~~~~~~~-D~h~  234 (264)
                      ....||++|+-..+..  +..+|.+|..|+.+|..+| +.+||+||.+++.+.+.+++...|+|. +++.   .+ |+|+
T Consensus       250 ~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle---~~~~~h~  326 (467)
T KOG4406|consen  250 PTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLE---VYKDLHA  326 (467)
T ss_pred             chhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHH---Hhccchh
Confidence            3468999999988765  7889999999999999999 999999999999999999999999996 3433   45 6999


Q ss_pred             HHHHHHHHHhcCCCCCCChHhHHHHHH
Q psy16474        235 LAGVLKLYLRELPEPLLTYALYEDWLA  261 (264)
Q Consensus       235 vaslLK~yLReLPePLit~~ly~~~i~  261 (264)
                      .|.+||.|||+||+||+|+++|+....
T Consensus       327 ~avllKtF~R~LpePL~t~~~y~~lt~  353 (467)
T KOG4406|consen  327 PAVLLKTFLRSLPEPLLTFRLYESLTG  353 (467)
T ss_pred             hHHHHHHHHhcCCcccchhhhhhhhhc
Confidence            999999999999999999999987653

>KOG1452|consensus

Probab=99.53  E-value=8.9e-15  Score=132.68  Aligned_cols=103  Identities=27%  Similarity=0.290  Sum_probs=92.6

Q ss_pred             CCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCc-CC-CCHHHHHHH
Q psy16474        161 KPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDA-LE-YDAHVLAGV  238 (264)
Q Consensus       161 ~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~-~~-~D~h~vasl  238 (264)
                      ..+||.+|+.+++++...-|+++.+|+.+||++|++..|+|++.|+..+-+-||..|+....+++.. +. -|.++|+++
T Consensus       182 rgvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvItg~  261 (442)
T KOG1452|consen  182 RGVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVITGD  261 (442)
T ss_pred             ccccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceeecc
Confidence            4689999999999999999999999999999999999999999999999999999999876555422 22 399999999


Q ss_pred             HHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        239 LKLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       239 LK~yLReLPePLit~~ly~~~i~a~  263 (264)
                      +|.|+|||||||+|...++.-++|+
T Consensus       262 ~kD~lrElpEPl~t~~~f~m~~dA~  286 (442)
T KOG1452|consen  262 SKDELRELPEPLVTGQDFEMDFDAA  286 (442)
T ss_pred             cHhHHHhCCCccccchhhhhhhhhh
Confidence            9999999999999999998888874

>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1

Probab=99.51  E-value=1.3e-14  Score=129.49  Aligned_cols=70  Identities=33%  Similarity=0.461  Sum_probs=68.9

Q ss_pred             hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhccCCCCCcccccHHHH
Q psy16474         19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEH   88 (264)
Q Consensus        19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~h   88 (264)
                      |+|||++++|||+|+++|.+|++++++++++|.+||++|+..|+..+|+|++.++.++.+|+||.+|++|
T Consensus       177 E~~kD~~~~dm~~~l~~e~e~~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~~~~~~~~~k~~fg~~leeh  246 (246)
T cd07618         177 EQCKDQLAADMYNFASKEGEYAKFFVLLLEAQADYHRKALAVIEKVLPEIQAHQDKWMEKPAFGTPLEEH  246 (246)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999998

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.

>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2

Probab=99.48  E-value=4e-14  Score=126.25  Aligned_cols=70  Identities=30%  Similarity=0.463  Sum_probs=68.6

Q ss_pred             hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhccCCCCCcccccHHHH
Q psy16474         19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEH   88 (264)
Q Consensus        19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~h   88 (264)
                      +.|||++.+|||+|+++|.+|+.++++|+++|.+||++|+..|+..+|.|++.++++|-+|+||..|++|
T Consensus       179 e~~kd~~~~~m~~~l~~e~e~~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~~~~~~k~~fg~~leeh  248 (248)
T cd07619         179 EICRDQLSADMYSFVAKEIDYANYFQTLIEVQAEYHRKSLELLQSVLPQIKAHQEAWVEKPSYGKPLEEH  248 (248)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccCCCcccC
Confidence            5799999999999999999999999999999999999999999999999999999999999999999988

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG1117|consensus

Probab=99.47  E-value=1.1e-13  Score=138.04  Aligned_cols=98  Identities=30%  Similarity=0.481  Sum_probs=85.5

Q ss_pred             CCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCC-cCCCCHHHHHHHHHHHH
Q psy16474        165 CQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFED-ALEYDAHVLAGVLKLYL  243 (264)
Q Consensus       165 G~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~-~~~~D~h~vaslLK~yL  243 (264)
                      |..|+++ +..+.+||.||.+||.|+.++||..|||||.+|...+++.|-..|-.+...+.. .....+.+|+++||+||
T Consensus       714 gt~Lqeq-qLs~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~Fl  792 (1186)
T KOG1117|consen  714 GTALQEQ-QLSKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFL  792 (1186)
T ss_pred             cchhhhh-hccCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHH
Confidence            6667665 457889999999999999999999999999999999999999999777554331 22347899999999999


Q ss_pred             hcCCCCCCChHhHHHHHHhh
Q psy16474        244 RELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       244 ReLPePLit~~ly~~~i~a~  263 (264)
                      |+|++||+|.++|..|++|+
T Consensus       793 rdlddpLft~~~~~~w~eaa  812 (1186)
T KOG1117|consen  793 RDLDDPLFTKELYPYWIEAA  812 (1186)
T ss_pred             HhCCccccchhhhhhHHHhh
Confidence            99999999999999999987

>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1

Probab=99.32  E-value=2.5e-12  Score=114.53  Aligned_cols=52  Identities=17%  Similarity=0.395  Sum_probs=50.9

Q ss_pred             hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhh
Q psy16474         19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNS   70 (264)
Q Consensus        19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~   70 (264)
                      |+|||+|++|||+|+++|.+|+++|++++++|++|||+|+..|+..+|+|++
T Consensus       188 E~~kd~~~a~Mynfl~kE~e~a~~l~~lveaQ~~YHrqsl~~Le~~l~~~~~  239 (257)
T cd07620         188 EQCKDQYSADLYHFATKEDSYANYFIRLLELQAEYHKNSLEFLDKNITELKE  239 (257)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999998

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins

Probab=99.28  E-value=3e-12  Score=114.56  Aligned_cols=70  Identities=44%  Similarity=0.704  Sum_probs=68.4

Q ss_pred             hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhccCCCCCcccccHHHH
Q psy16474         19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEH   88 (264)
Q Consensus        19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~h   88 (264)
                      ++|+|.++++||+|+++|.+++++++++++.|.+||++|+..|+..+|+|.+.+...+.+|+||.+|++|
T Consensus       175 e~~~e~~~~~M~~~l~~E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~~~~~~~kp~fg~~l~eh  244 (244)
T cd07595         175 EQCRDALATDMYEFLAKEAEIASYLIDLIEAQREYHRTALSVLEAVLPELQEQIEQSPSKPVFGQPLEEH  244 (244)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Confidence            5799999999999999999999999999999999999999999999999999999999999999999887

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and

>KOG4271|consensus

Probab=99.16  E-value=1.4e-11  Score=124.12  Aligned_cols=102  Identities=25%  Similarity=0.497  Sum_probs=88.3

Q ss_pred             CCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhc-cCCCCCcCCCCHHHHHHHH
Q psy16474        161 KPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAH-CIKFEDALEYDAHVLAGVL  239 (264)
Q Consensus       161 ~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~-~~~~~~~~~~D~h~vaslL  239 (264)
                      ...||.+|..... ...+||..+++|++|++..|+.+||+||++|+......++..|.+. +.++.. .+..+|++|+.+
T Consensus       915 s~~~~~~l~~~~t-~~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s-~d~~v~~vagAl  992 (1100)
T KOG4271|consen  915 SNYFLTPLQDAVT-SEKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSS-MDTTVNVVAGAL  992 (1100)
T ss_pred             hhccCCccccccc-CCcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccc-cccccccccCcc
Confidence            3589999987754 5677999999999999999999999999999999999999999773 333322 244799999999


Q ss_pred             HHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474        240 KLYLRELPEPLLTYALYEDWLAAAR  264 (264)
Q Consensus       240 K~yLReLPePLit~~ly~~~i~a~k  264 (264)
                      |.||..||+||+++.++..|.+|++
T Consensus       993 ksffa~Lpeplipys~h~~~~e~~k 1017 (1100)
T KOG4271|consen  993 KSFFACLPEPLIPYSYHPRLKEAMK 1017 (1100)
T ss_pred             hhhhhhCCCcccCccCCcchhhhhh
Confidence            9999999999999999999998864

>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins

Probab=98.75  E-value=3e-08  Score=86.16  Aligned_cols=82  Identities=27%  Similarity=0.315  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHhcCCCCCCc---ccccCCHHHHHHH-HHHHhhccCCCCCc-------CCCCHHHHHHHHHHHHhcCCCC
Q psy16474        181 FPIELCTRALCQIGMDEEGL---FRVTGGASKVKRL-KTCLDAHCIKFEDA-------LEYDAHVLAGVLKLYLRELPEP  249 (264)
Q Consensus       181 ~vv~~ci~~L~~~Gl~~eGI---FR~~G~~~~v~~L-k~~ld~~~~~~~~~-------~~~D~h~vaslLK~yLReLPeP  249 (264)
                      .++..|+++|+.+|+++++|   ||..++.+.++.+ +..|+.+.......       ...|+|+++++||.|||.||.+
T Consensus         8 ~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~~   87 (198)
T cd04401           8 GLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPGS   87 (198)
T ss_pred             HHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCCC
Confidence            46889999999999999999   9999999999999 66777663222211       1249999999999999999999


Q ss_pred             CCCh-HhHHHHHHh
Q psy16474        250 LLTY-ALYEDWLAA  262 (264)
Q Consensus       250 Lit~-~ly~~~i~a  262 (264)
                      ++++ +.|..|..+
T Consensus        88 ~v~~~~~Y~~F~~~  101 (198)
T cd04401          88 KVIWWEVYEEFKAR  101 (198)
T ss_pred             ccCCHHHHHHHHHH
Confidence            9999 999999874

Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins

Probab=98.60  E-value=1e-07  Score=84.27  Aligned_cols=102  Identities=21%  Similarity=0.214  Sum_probs=77.0

Q ss_pred             CCCCCcHHHHHhhhCCCCcHHHHHHH--HHHHhcCCCC--CCcccccCCHHHHHHHHHHHhhccCCCC-C--cCCCCH--
Q psy16474        162 PMFCQPLEEHLALIGCKIAFPIELCT--RALCQIGMDE--EGLFRVTGGASKVKRLKTCLDAHCIKFE-D--ALEYDA--  232 (264)
Q Consensus       162 ~vFG~~L~~~l~~~~~~iP~vv~~ci--~~L~~~Gl~~--eGIFR~~G~~~~v~~Lk~~ld~~~~~~~-~--~~~~D~--  232 (264)
                      .+||+|+-+.+..++...|..+..-.  +++..+-++.  .|+||.++..+.+...++.++....... +  ...++-  
T Consensus        20 ~l~glp~Ld~vl~~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~   99 (235)
T cd04405          20 QLVGLPLLEELLDPALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHD   99 (235)
T ss_pred             HHcCCccHHHHhcccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccc
Confidence            47899988888888888888876554  4444444443  7999999999999999999988742211 1  111221  


Q ss_pred             ------HHHHHHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        233 ------HVLAGVLKLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       233 ------h~vaslLK~yLReLPePLit~~ly~~~i~a~  263 (264)
                            .+|+.+++.||++|||||+|..+|+.|+..+
T Consensus       100 ~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~  136 (235)
T cd04405         100 MLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGIL  136 (235)
T ss_pred             cccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHH
Confidence                  2799999999999999999999999988754

This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG4724|consensus

Probab=98.45  E-value=7.2e-08  Score=94.99  Aligned_cols=103  Identities=24%  Similarity=0.262  Sum_probs=89.3

Q ss_pred             hcCCCCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHH
Q psy16474        156 LVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVL  235 (264)
Q Consensus       156 ~~~~~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~v  235 (264)
                      .+..+..+||.||..++....  +|..++...-++-..|--++||||...+...+++||+.++.|..  .+.....++++
T Consensus        75 ~~~~~~~Lfg~pl~nic~~~~--lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~--v~l~~~~i~v~  150 (741)
T KOG4724|consen   75 SNTADSFLFGWPLTNICVHFR--LPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVD--VGLKSGEIVVD  150 (741)
T ss_pred             CCCCCccccCccchhhcccCC--CCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhccccc--ccccccceEEe
Confidence            344566899999999987444  89999999888889999999999999999999999999999842  23445589999


Q ss_pred             HHHHHHHHhcCCCCCCChHhHHHHHHh
Q psy16474        236 AGVLKLYLRELPEPLLTYALYEDWLAA  262 (264)
Q Consensus       236 aslLK~yLReLPePLit~~ly~~~i~a  262 (264)
                      |.++|.|+|.+|.-++.+++|+.|+-+
T Consensus       151 a~v~kdflr~ip~~~lSsdl~~hw~~~  177 (741)
T KOG4724|consen  151 AAVDKDFLRTIPQLTLSSDLNSHWQLQ  177 (741)
T ss_pred             ehhhhchhhhchhhhhccccHHHHhhc
Confidence            999999999999999999999999754

>KOG3565|consensus

Probab=97.99  E-value=4.9e-06  Score=83.69  Aligned_cols=87  Identities=26%  Similarity=0.290  Sum_probs=75.0

Q ss_pred             CCCCcHHHHHHHHHHHhcCCCCCCccc-ccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCCC-CCCh
Q psy16474        176 GCKIAFPIELCTRALCQIGMDEEGLFR-VTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEP-LLTY  253 (264)
Q Consensus       176 ~~~iP~vv~~ci~~L~~~Gl~~eGIFR-~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPeP-Lit~  253 (264)
                      +..||.++..|+.+++.+|+..+|||| ++|....|..++.++..|..-.....+-+... |.++|+|+|.|.+| ++++
T Consensus       215 ~q~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~  293 (640)
T KOG3565|consen  215 FQFIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPF  293 (640)
T ss_pred             cccccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCcc
Confidence            567999999999999999999999999 99999999999999988832222333346666 99999999999999 9999


Q ss_pred             HhHHHHHHhh
Q psy16474        254 ALYEDWLAAA  263 (264)
Q Consensus       254 ~ly~~~i~a~  263 (264)
                      +.+..|++++
T Consensus       294 e~~~~~~~~~  303 (640)
T KOG3565|consen  294 EDFGQPHDCA  303 (640)
T ss_pred             ccccchhhhh
Confidence            9999998865

>KOG4370|consensus

Probab=97.88  E-value=1.5e-05  Score=75.46  Aligned_cols=105  Identities=23%  Similarity=0.288  Sum_probs=78.4

Q ss_pred             CCCCCCCCcHHHHHhh----hCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhcc-------------
Q psy16474        159 PMKPMFCQPLEEHLAL----IGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHC-------------  221 (264)
Q Consensus       159 ~~~~vFG~~L~~~l~~----~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~-------------  221 (264)
                      +.+++-|.++...+..    +|.+.|-.....+++.+.+|.-+||++|.+...++..+++..-..+.             
T Consensus        47 ~~~~~~~l~~~~~v~~d~e~d~~~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~  126 (514)
T KOG4370|consen   47 AIKRVLGLPLTESVSADPELDGIPLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGL  126 (514)
T ss_pred             cCChhhcCCCCcccccCcccCCCcCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhH
Confidence            3456666666655432    45678888999999999999999999999998877666654332210             


Q ss_pred             -------CC-------------------CCCcCCCCHHHHHHHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        222 -------IK-------------------FEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       222 -------~~-------------------~~~~~~~D~h~vaslLK~yLReLPePLit~~ly~~~i~a~  263 (264)
                             +.                   .....++.+.+|||+||+|+|+||+||+|.++-..|.+++
T Consensus       127 ~k~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~  194 (514)
T KOG4370|consen  127 IKRFLRQIPEPVVPIEFPSVARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVF  194 (514)
T ss_pred             HHHhhhccCCccccccchHHHHHHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence                   00                   0122345799999999999999999999999999998764

>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3

Probab=97.54  E-value=0.00017  Score=63.84  Aligned_cols=55  Identities=13%  Similarity=0.206  Sum_probs=51.8

Q ss_pred             hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhc
Q psy16474         19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLIL   73 (264)
Q Consensus        19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~   73 (264)
                      ++|++.....|++|...|.++...+.+++..|.+||++|...|+...|.|...+.
T Consensus       167 ees~E~a~~~M~n~le~e~e~~~~L~~lv~AQl~Yh~~a~eiL~~l~~~l~~~~~  221 (223)
T cd07615         167 EESKELAERSMFNFLENDVEQVSQLSVLIEAALDYHRQSTEILEDLQSKLQNRIS  221 (223)
T ss_pred             HHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999999999999999999999987654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e

>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A

Probab=97.30  E-value=0.0005  Score=60.99  Aligned_cols=55  Identities=18%  Similarity=0.258  Sum_probs=51.3

Q ss_pred             hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhc
Q psy16474         19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLIL   73 (264)
Q Consensus        19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~   73 (264)
                      +++++.....|++|++.|.++...+..+++.|.+||+++...|+...++|...+.
T Consensus       167 e~s~E~a~~~M~~il~~e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~~~~~  221 (223)
T cd07592         167 EESKELAENSMFNLLENDVEQVSQLSALVEAQLDYHRQSAEILEELQSKLQERIS  221 (223)
T ss_pred             HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5688889999999999999999999999999999999999999999999987654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra

>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1

Probab=97.26  E-value=0.00057  Score=60.54  Aligned_cols=55  Identities=18%  Similarity=0.266  Sum_probs=51.3

Q ss_pred             hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhc
Q psy16474         19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLIL   73 (264)
Q Consensus        19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~   73 (264)
                      ++|++.....|++|...|.+..+.+.++++.|.+||++|...|+...++|.+.+.
T Consensus       167 ees~E~a~~~M~n~l~~e~e~~~~L~~fveAQl~Yh~qa~eiL~~l~~~l~~~~~  221 (223)
T cd07613         167 DESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQATQILQQVTVKLEDRIR  221 (223)
T ss_pred             HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5788899999999999999999999999999999999999999999999877553

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i

>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2

Probab=96.71  E-value=0.0036  Score=55.53  Aligned_cols=55  Identities=20%  Similarity=0.251  Sum_probs=50.7

Q ss_pred             hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhc
Q psy16474         19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLIL   73 (264)
Q Consensus        19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~   73 (264)
                      +++++.....|+++.+.|.+....+..+++.|.+||++|...|+...++|...+.
T Consensus       167 ees~E~a~~~M~~il~~e~e~~~~L~~lveAQl~Yh~qa~eiL~~l~~~l~~~~~  221 (223)
T cd07614         167 EESKEVAETSMHNLLETDIEQVSQLSALVDAQLDYHRQAVQILDELAEKLKRRMR  221 (223)
T ss_pred             HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5678888999999999999999999999999999999999999999999876553

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated

>KOG4724|consensus

Probab=96.15  E-value=0.0098  Score=59.55  Aligned_cols=103  Identities=18%  Similarity=0.123  Sum_probs=73.1

Q ss_pred             CCCCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHH----HHHHHhh-ccCCCCCcCCCCH
Q psy16474        158 NPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKR----LKTCLDA-HCIKFEDALEYDA  232 (264)
Q Consensus       158 ~~~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~----Lk~~ld~-~~~~~~~~~~~D~  232 (264)
                      .-.+..||.||+.++. .+.++|..+......|...+..++++||..-...-+-+    ....+.. |.  ..+.....+
T Consensus       411 ~l~kv~fdaPlS~~c~-d~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr--~vdv~sspv  487 (741)
T KOG4724|consen  411 ELAKVPFDAPLSVFCA-DQGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGR--PVDVPSSPV  487 (741)
T ss_pred             hhhhCcCCCchhhccc-ccCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCC--cccCCCCCc
Confidence            3445789999999877 45556666666667778889999999988333222221    1122222 32  223445689


Q ss_pred             HHHHHHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        233 HVLAGVLKLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       233 h~vaslLK~yLReLPePLit~~ly~~~i~a~  263 (264)
                      |++++++|.|+|.+|.-++..+.+.++.+|.
T Consensus       488 ~taasv~KdfnRKtpRgi~sr~ihke~~ea~  518 (741)
T KOG4724|consen  488 HTAASVHKDFNRKTPRGIPSREIHKESMEAT  518 (741)
T ss_pred             hHHHHHHHHhhhhcCCCccchHHHHHhhhhh
Confidence            9999999999999999999999999998873

>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins

Probab=96.12  E-value=0.011  Score=52.15  Aligned_cols=49  Identities=18%  Similarity=0.242  Sum_probs=45.1

Q ss_pred             hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhh
Q psy16474         19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQ   67 (264)
Q Consensus        19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~   67 (264)
                      +++++.....|+++.+.|.+....+..+++.|.+||+++...|+....+
T Consensus       159 ees~E~a~~~M~~i~~~e~e~~~~L~~lv~AQl~Yh~q~~e~L~~l~~~  207 (215)
T cd07593         159 EESSEDVEARMVAIKESEADQYRDLTDLLDAELDYHQQSLDVLREVRQS  207 (215)
T ss_pred             HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4678888999999999999999999999999999999999999887754

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol

>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation []

Probab=96.01  E-value=0.018  Score=55.69  Aligned_cols=84  Identities=23%  Similarity=0.282  Sum_probs=66.1

Q ss_pred             CcHHHHHHHHHHHhcCCCCCCcc---cccCCHHHHHHHHH-HHhhccCC----C----CCcCCCCHHHHHHHHHHHHhcC
Q psy16474        179 IAFPIELCTRALCQIGMDEEGLF---RVTGGASKVKRLKT-CLDAHCIK----F----EDALEYDAHVLAGVLKLYLREL  246 (264)
Q Consensus       179 iP~vv~~ci~~L~~~Gl~~eGIF---R~~G~~~~v~~Lk~-~ld~~~~~----~----~~~~~~D~h~vaslLK~yLReL  246 (264)
                      +-.+|..|.+.|..+|+++.+||   |-.-+.+.++.+.. .|+.+...    .    ......++|+++++||--+..|
T Consensus         8 v~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RL   87 (420)
T PF08101_consen    8 VKDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRL   87 (420)
T ss_pred             HHHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHc
Confidence            34568999999999999999998   77778888888755 55554321    0    0111239999999999999999


Q ss_pred             CCCCCChHhHHHHHHh
Q psy16474        247 PEPLLTYALYEDWLAA  262 (264)
Q Consensus       247 PePLit~~ly~~~i~a  262 (264)
                      |.-+++++.|..|...
T Consensus        88 p~gvVgW~~Y~~Fk~~  103 (420)
T PF08101_consen   88 PGGVVGWDSYEEFKRR  103 (420)
T ss_pred             CCCccccHHHHHHHHH
Confidence            9999999999999753

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain

Probab=94.38  E-value=0.014  Score=45.82  Aligned_cols=46  Identities=20%  Similarity=0.204  Sum_probs=39.3

Q ss_pred             chHHHHHHHhhhh--hhcC--CccCCCcceeeecccCHHHHHHHHHHHHh
Q psy16474         98 FPIELCTRALCQV--RRLG--NFVQDSYTTITLCHASRDVIKQHEEALLH  143 (264)
Q Consensus        98 ~~~~~C~~rl~~~--~r~~--~~~~~~~~~~t~~~~s~~~~k~~~~~~~~  143 (264)
                      +.+..|+++..+.  +|+|  +.+.++++++++||.|+++++.|.+++++
T Consensus        54 ~~l~sc~~r~~~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~dg  103 (104)
T cd01249          54 LTLKSCSRRKTESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMDG  103 (104)
T ss_pred             EeeeeccccccCCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhcC
Confidence            5567899999876  8999  55577888999999999999999998875

Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>smart00721 BAR BAR domain

Probab=94.18  E-value=0.11  Score=45.23  Aligned_cols=50  Identities=20%  Similarity=0.301  Sum_probs=45.7

Q ss_pred             hhHhHHHHHHHHHhhhhhh-HHHHHHHHHHHhhhchHHHHHhhhhhhhhhh
Q psy16474         20 EEEDTLATEMYYIIARECE-IAQVIVDYVHMQKKQHEEALLHLNETLPQLN   69 (264)
Q Consensus        20 ~~~d~~~~~~~~~~~ke~~-~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~   69 (264)
                      .++++|..+|..|.+.+.+ +...+..++.+|..||+++...|+...+.|.
T Consensus       188 ~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l~  238 (239)
T smart00721      188 ESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQLD  238 (239)
T ss_pred             HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4688999999999999988 8999999999999999999999999988763

>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1

Probab=92.62  E-value=0.11  Score=46.91  Aligned_cols=40  Identities=33%  Similarity=0.436  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHhhhhchhhhhhhhhcCCCCCCCCCcHHHH
Q psy16474        132 DVIKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEH  171 (264)
Q Consensus       132 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~vFG~~L~~~  171 (264)
                      .-...|+.+...++..+|.++..+..++.+|+||+||++|
T Consensus       207 aQ~eYHr~a~e~Le~~~p~i~~~~~~~~~k~~fg~~leeh  246 (246)
T cd07618         207 AQADYHRKALAVIEKVLPEIQAHQDKWMEKPAFGTPLEEH  246 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccC
Confidence            3445688888889999999999999999999999999975

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.

>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2

Probab=90.78  E-value=1.9  Score=38.97  Aligned_cols=38  Identities=34%  Similarity=0.488  Sum_probs=34.0

Q ss_pred             HHHHHHHHHhhhhchhhhhhhhhcCCCCCCCCCcHHHH
Q psy16474        134 IKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEH  171 (264)
Q Consensus       134 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~vFG~~L~~~  171 (264)
                      ...|+.+...++...|.+...+..++.+|+||++|++|
T Consensus       211 leYHr~A~eiLe~l~~~i~~~~~~~~~k~~fg~~leeh  248 (248)
T cd07619         211 AEYHRKSLELLQSVLPQIKAHQEAWVEKPSYGKPLEEH  248 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCccCCCcccC
Confidence            35688888999999999999999999999999999875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF00784 MyTH4: MyTH4 domain; InterPro: IPR000857 The microtubule-based kinesin motors and actin-based myosin motors generate movements required for intracellular trafficking, cell division, and muscle contraction

Probab=90.00  E-value=0.095  Score=41.31  Aligned_cols=78  Identities=13%  Similarity=0.114  Sum_probs=53.3

Q ss_pred             hhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhccCCCCCcccccHHHHHhh--hCCcccchHHHHHHHhhhhhh
Q psy16474         35 RECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLAL--IGCKIAFPIELCTRALCQVRR  112 (264)
Q Consensus        35 ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~hl~~--~g~~I~~~~~~C~~rl~~~~r  112 (264)
                      +++-|++.++|+..+  +........|++..--...+.++....+++..|+..+...  .+..++..+..|.++|....+
T Consensus        20 rDEiy~QliKQtt~n--p~~~s~~r~W~Ll~~~~~~f~PS~~l~~yL~~fl~~~~~~~~~~~~~~~~a~~c~~~L~~~~~   97 (114)
T PF00784_consen   20 RDEIYCQLIKQTTNN--PSPDSCIRGWQLLALCCSCFPPSKDLLPYLRNFLNRHADSQESDPEVGKYAQYCLRRLKRTKK   97 (114)
T ss_dssp             HHHHHHHHHHHTSS---SSCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHCCHCHHSTTSHHHCCHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHHHCC--CchhhHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCcccCCCchHHHHHHHHHHHHHHHhh
Confidence            567789999999888  4456667788887766666777777777776666666543  256788999999999987765


Q ss_pred             cC
Q psy16474        113 LG  114 (264)
Q Consensus       113 ~~  114 (264)
                      .|
T Consensus        98 ~g   99 (114)
T PF00784_consen   98 NG   99 (114)
T ss_dssp             H-
T ss_pred             cc
Confidence            55

In general, these proteins consist of a motor domain that generates movement and a tail region that varies widely from class to class and is thought to mediate many of the regulatory or cargo binding functions specific to each class of motor []. The Myosin Tail Homology 4 (MyTH4) domain has been identified as a conserved domain in the tail domains of several different unconventional myosins [] and a plant kinesin-like protein [], but has more recently been found in several non-motor proteins []. Although the function is not yet fully understood, there is an evidence that the MyTH4 domain of Myosin-X (Myo10) binds to microtubules and thus could provide a link between an actin-based motor protein and the microtubule cytoskeleton []. The MyTH4 domain is found in one or two copies associated with other domains, such as myosin head, kinesin motor, FERM, PH, SH3 and IQ. The domain is predicted to be largely alpha-helical, interrupted by three or four turns. The MyTH4 domain contains four highly conserved regions designated MGD (consensus sequence L(K/R)(F/Y)MGDhP, LRDE (consensus LRDEhYCQhhKQHxxxN), RGW (consensus RGWxLh), and ELEA (RxxPPSxhELEA), where h indicates a hydrophobic residue and x is any residue [].; GO: 0005856 cytoskeleton; PDB: 3AU5_A 3AU4_A 3PZD_A 3PVL_A.

>KOG1118|consensus

Probab=89.06  E-value=1  Score=41.72  Aligned_cols=58  Identities=17%  Similarity=0.193  Sum_probs=48.5

Q ss_pred             hhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhccCCC
Q psy16474         20 EEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPM   77 (264)
Q Consensus        20 ~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~~~~~   77 (264)
                      +.+...-..|+++..-|.+=-.-+.+|+..|-+||++|.+.|+..--.+.+.+.....
T Consensus       187 ESkE~aE~sM~nlle~d~eqvsqL~~Li~aqLdfhrqs~~iL~~l~~~l~~r~r~a~~  244 (366)
T KOG1118|consen  187 ESKELAEDSMFNLLENDVEQVSQLSALIQAQLDFHRQSTQILQELQMKLFSRIRDASS  244 (366)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence            3444556789999999999999999999999999999999999988887776665544

>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Probab=88.93  E-value=1.2  Score=37.93  Aligned_cols=49  Identities=20%  Similarity=0.314  Sum_probs=44.4

Q ss_pred             hhHhHHHHHHHHHhhhhhhHH-HHHHHHHHHhhhchHHHHHhhhhhhhhh
Q psy16474         20 EEEDTLATEMYYIIARECEIA-QVIVDYVHMQKKQHEEALLHLNETLPQL   68 (264)
Q Consensus        20 ~~~d~~~~~~~~~~~ke~~~~-~~~~~~~~~~~~yh~~a~~~l~~~~~~l   68 (264)
                      ...+.|..+|-.|.+.+.++. ..+.+++..|..||.++...|+...|.|
T Consensus       179 ~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~~l  228 (229)
T PF03114_consen  179 ALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQPQL  228 (229)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            456788999999998888888 9999999999999999999999998876

Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....

>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins

Probab=86.06  E-value=3.8  Score=36.83  Aligned_cols=38  Identities=47%  Similarity=0.692  Sum_probs=32.9

Q ss_pred             HHHHHHHHHhhhhchhhhhhhhhcCCCCCCCCCcHHHH
Q psy16474        134 IKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEH  171 (264)
Q Consensus       134 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~vFG~~L~~~  171 (264)
                      +..|+.+...++..+|.+...+.....+|+||++|++|
T Consensus       207 l~YH~~a~e~L~~l~~~l~~~~~~~~~kp~fg~~l~eh  244 (244)
T cd07595         207 REYHRTALSVLEAVLPELQEQIEQSPSKPVFGQPLEEH  244 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Confidence            35688888888889999999999999999999999864

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and

>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins

Probab=84.94  E-value=2.1  Score=38.54  Aligned_cols=43  Identities=28%  Similarity=0.240  Sum_probs=37.1

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhh
Q psy16474         26 ATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQL   68 (264)
Q Consensus        26 ~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l   68 (264)
                      +..++..+.+..+....+..++..|..||+++...|+..++.+
T Consensus       200 a~~~M~~il~~~e~i~~L~~fv~AQl~Yh~~~~e~L~~l~~~~  242 (242)
T cd07600         200 AVELMKEVLDNPEPLQLLKELVKAQLAYHKTAAELLEELLSVL  242 (242)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            5566666777799999999999999999999999999887653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1

Probab=82.31  E-value=2.5  Score=37.72  Aligned_cols=38  Identities=11%  Similarity=0.044  Sum_probs=34.3

Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhh
Q psy16474         28 EMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETL   65 (264)
Q Consensus        28 ~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~   65 (264)
                      -|.++.+.|.+....+..+++.|.+||+++-..|+..-
T Consensus       189 ~m~~i~~~~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L~  226 (229)
T cd07616         189 LLEGISSTHAHHLRCLNDFVEAQMTYYAQCYQYMLDLQ  226 (229)
T ss_pred             HHHhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888888999999999999999999999999887654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact

>KOG1453|consensus

Probab=81.94  E-value=0.33  Score=51.49  Aligned_cols=99  Identities=23%  Similarity=0.349  Sum_probs=76.5

Q ss_pred             CCCCcHHHH-H-hhhCCCCcHHHHH-HHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccC---CCCCcCC-C-CHHH
Q psy16474        163 MFCQPLEEH-L-ALIGCKIAFPIEL-CTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI---KFEDALE-Y-DAHV  234 (264)
Q Consensus       163 vFG~~L~~~-l-~~~~~~iP~vv~~-ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~---~~~~~~~-~-D~h~  234 (264)
                      ++|+++..+ . .......|.++.. |.......|....|+||.+|+...+...+..+|....   ++..... + ++..
T Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~  541 (918)
T KOG1453|consen  462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL  541 (918)
T ss_pred             ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence            788887776 3 3345556777877 7788888899999999999999999999999988542   1111111 2 5667


Q ss_pred             HHHHHHHHHhcC--CCCCCChHhHHHHHH
Q psy16474        235 LAGVLKLYLREL--PEPLLTYALYEDWLA  261 (264)
Q Consensus       235 vaslLK~yLReL--PePLit~~ly~~~i~  261 (264)
                      .++.++.|+|.+  |.|..+...|..|++
T Consensus       542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~  570 (918)
T KOG1453|consen  542 HSGALKHYLRSLRKPAPCRTCETYSWFME  570 (918)
T ss_pred             ccCcchhhhhcccCCcccccccccchhhh
Confidence            777999999999  999999998888874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	264
3byi_A	214	Crystal Structure Of Human Rho Gtpase Activating Pr		4e-11
2osa_A	202	The Rho-Gap Domain Of Human N-Chimaerin Length = 20		1e-09
3cxl_A	463	Crystal Structure Of Human Chimerin 1 (Chn1) Length		3e-09
3iug_A	229	Crystal Structure Of The Rhogap Domain Of Rics Leng		4e-09
1xa6_A	466	Crystal Structure Of The Human Beta2-Chimaerin Leng		5e-09
3kuq_A	228	Crystal Structure Of The Dlc1 Rhogap Domain Length		6e-08
1f7c_A	231	Crystal Structure Of The Bh Domain From Graf, The G		3e-07
2ee5_A	219	Solution Structure Of The N-Teruminus Extended Rhog		6e-07
2ee4_A	209	Solution Structure Of The Rhogap Domain From Human		8e-07
3fk2_A	246	Crystal Structure Of The Rhogap Domain Of Human Glu		3e-06
2ovj_A	201	The Crystal Structure Of The Human Rac Gtpase Activ		2e-05
1tx4_A	198	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198		1e-04
3eap_A	271	Crystal Structure Of The Rhogap Domain Of Arhgap11a		2e-04
1am4_A	199	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		4e-04
1grn_B	203	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX		5e-04
1ow3_A	242	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		5e-04

>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein 15 (arhgap15) Length = 214

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 179 IAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAH-CIKFEDALEYDAHVLAG 237
           + + ++ C  A+ + G+D +G++RV+G  + +++L+  ++    +  +D+   D HV+ G
Sbjct: 35  VPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTG 94
Query: 238 VLKLYLRELPEPLLTYALYEDWLAAAR 264
            LK++ RELPEPL  Y+ +E ++ A +
Sbjct: 95  ALKMFFRELPEPLFPYSFFEQFVEAIK 121

>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin Length = 202

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 183 IELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY--DAHVLAGVLK 240
           +++C R +   G++ EGL+RV+G +  ++ +K   D    K + ++    D +++ G LK
Sbjct: 28  VDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALK 87
Query: 241 LYLRELPEPLLTYALYEDWLAAAR 264
           LY R+LP PL+TY  Y  ++ +A+
Sbjct: 88  LYFRDLPIPLITYDAYPKFIESAK 111

>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1) Length = 463

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 183 IELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY--DAHVLAGVLK 240
           +++C R +   G++ EGL+RV+G +  ++ +K   D    K + ++    D +++ G LK
Sbjct: 289 VDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALK 348
Query: 241 LYLRELPEPLLTYALYEDWLAAAR 264
           LY R+LP PL+TY  Y  ++ +A+
Sbjct: 349 LYFRDLPIPLITYDAYPKFIESAK 372

>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics Length = 229

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 163 MFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI 222
           +F   L EHL   G ++   ++ CT  + + G+  +G++R++G AS ++RL+   D+  +
Sbjct: 21  VFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHV 79
Query: 223 KFEDALEY--DAHVLAGVLKLYLRELPEPLLTYALYEDWLAA 262
                  Y  D H +  + KLY RELP PLLTY LYE +  A
Sbjct: 80  PDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDA 121

>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin Length = 466

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 160 MKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDA 219
           +K ++C  L   +     +    +++C R +   G+  EGL+RV+G    ++ +K   D 
Sbjct: 269 IKKVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDR 328
Query: 220 HCIKFEDALEY--DAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
              K + +     D +++ G LKLY R+LP P++TY  Y  ++ AA+
Sbjct: 329 DGEKADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAK 375

>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain Length = 228

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 163 MFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDA--H 220
           +F  PL  ++   G  +   I+   R L    +D+ GLFR +G  S+++ L+   +    
Sbjct: 20  VFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAID 79
Query: 221 CIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWL 260
           C+ +E    YD   +A +LK Y R+LPEPL+T  L E +L
Sbjct: 80  CVNYEGQSAYD---VADMLKQYFRDLPEPLMTNKLSETFL 116

>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase Regulator Associated With Focal Adhesion Kinase Length = 231

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 171 HLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCL----DAHCIKFED 226
            L  IG  I   I+ C  A+   G++E+GL+R+ G  S+V++L + L     A   + E 
Sbjct: 32  QLDSIGFSI---IKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEI 88
Query: 227 ALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
             E++   +   LK YLR LP PL+ Y     ++ AA+
Sbjct: 89  CAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAK 126

>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 219

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDA-HCI 222
           F  PL++ L      I   +E C   +   G+  EGL+RV+G  +    ++   D  H I
Sbjct: 23  FGMPLQD-LVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNI 81
Query: 223 KFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
               ++E   + +AG LK +  +LP+PL+ Y+L+ + L AA+
Sbjct: 82  NLV-SMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAK 122

>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 209

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDA-HCI 222
           F  PL++ L      I   +E C   +   G+  EGL+RV+G  +    ++   D  H I
Sbjct: 13  FGMPLQD-LVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNI 71
Query: 223 KFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
               ++E   + +AG LK +  +LP+PL+ Y+L+ + L AA+
Sbjct: 72  NLV-SMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAK 112

>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Glucocorticoid Receptor Dna-Binding Factor 1 Length = 246

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 183 IELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDA-HCIKFEDALEYDAHVLAGVLKL 241
           IE C   +   G+  EG++RV+G  S+++ L+   D  H +   +  ++  + +AG +K 
Sbjct: 72  IERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEK-DFTVNTVAGAMKS 130
Query: 242 YLRELPEPLLTYALYEDWLAAAR 264
           +  ELP+PL+ Y +  D + A +
Sbjct: 131 FFSELPDPLVPYNMQIDLVEAHK 153

>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating Protein 1 (Racgap1) Mgcracgap Length = 201

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 186 CTRALCQIGMDEEGLFRVTGGASKVKRLK-TCLDAHCIKFEDALEYDAHVLAGVLKLYLR 244
           C   + Q G+ E GL+R++G    VK LK   L    +     ++ D H +  +LK +LR
Sbjct: 24  CVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVD-DIHAICSLLKDFLR 82
Query: 245 ELPEPLLTYALYEDWLAAA 263
            L EPLLT+ L   ++ AA
Sbjct: 83  NLKEPLLTFRLNRAFMEAA 101

>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 194 GMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDA-HVLAGVLKLYLRELPEPLL 251
            +  EG+FR +     V+ ++   +    + F+   +Y+A H+ A +LK +LRELPEPLL
Sbjct: 41  ALTTEGIFRRSANTQVVREVQQKYNMGLPVDFD---QYNALHLPAVILKTFLRELPEPLL 97
Query: 252 TYALY 256
           T+ LY
Sbjct: 98  TFDLY 102

>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a Length = 271

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 180 AFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVL 239
           +F ++ CT     I    EGLFR +G   ++K LK  +D        A   D   +AG+L
Sbjct: 85  SFLVDACTSLEDHI--HTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCD---IAGLL 139
Query: 240 KLYLRELPEPLLTYALYEDWLAA 262
           K + RELPEP+L   L+E  L A
Sbjct: 140 KQFFRELPEPILPADLHEALLKA 162

>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 199

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 194 GMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGVLKLYLRELPEPLLT 252
            +  EG+FR +     V+ ++   +    + F+   E   H+ A +LK +LRELPEPLLT
Sbjct: 42  ALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNEL--HLPAVILKTFLRELPEPLLT 99
Query: 253 YALY 256
           + LY
Sbjct: 100 FDLY 103

>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX Length = 203

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 194 GMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGVLKLYLRELPEPLLT 252
            +  EG+FR +     V+ ++   +    + F+   E   H+ A +LK +LRELPEPLLT
Sbjct: 38  ALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNEL--HLPAVILKTFLRELPEPLLT 95
Query: 253 YALY 256
           + LY
Sbjct: 96  FDLY 99

>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 242

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 194 GMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGVLKLYLRELPEPLLT 252
            +  EG+FR +     V+ ++   +    + F+   E   H+ A +LK +LRELPEPLLT
Sbjct: 77  ALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNEL--HLPAVILKTFLRELPEPLLT 134
Query: 253 YALY 256
           + LY
Sbjct: 135 FDLY 138

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	264
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	4e-34
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	9e-34
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	1e-33
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	5e-33
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	8e-33
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	8e-32
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	9e-32
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	2e-31
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	3e-31
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	4e-31
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	7e-31
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	5e-29
3eap_A	271	RHO GTPase-activating protein 11A; GAP, structural	6e-26
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	3e-25
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	2e-24
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	1e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
2z0v_A	240	SH3-containing GRB2-like protein 3; helix bundle,	8e-04

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Length = 202

 Score =  121 bits (306), Expect = 4e-34
 Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 2/108 (1%)

Query: 159 PMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLD 218
            +K ++   L   +     K    +++C R +   G++ EGL+RV+G +  ++ +K   D
Sbjct: 4   HVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFD 63

Query: 219 --AHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
                      +  D +++ G LKLY R+LP PL+TY  Y  ++ +A+
Sbjct: 64  RDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAK 111

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Length = 228

 Score =  121 bits (305), Expect = 9e-34
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 1/104 (0%)

Query: 161 KPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAH 220
             +F  PL  ++   G  +   I+   R L    +D+ GLFR +G  S+++ L+   +  
Sbjct: 18  GSVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGA 77

Query: 221 CIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
                      A+ +A +LK Y R+LPEPL+T  L E +L   +
Sbjct: 78  IDCVNYE-GQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 120

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Length = 209

 Score =  120 bits (303), Expect = 1e-33
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 1/107 (0%)

Query: 158 NPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCL 217
                 F  PL+  L      I   +E C   +   G+  EGL+RV+G  +    ++   
Sbjct: 7   GWESNYFGMPLQ-DLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQF 65

Query: 218 DAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
           D        ++E   + +AG LK +  +LP+PL+ Y+L+ + L AA+
Sbjct: 66  DQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAK 112

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Length = 229

 Score =  119 bits (300), Expect = 5e-33
 Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 3/108 (2%)

Query: 159 PMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLD 218
             + +F   L EHL   G ++   ++ CT  + + G+  +G++R++G AS ++RL+   D
Sbjct: 17  QGERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFD 75

Query: 219 AHCIKF--EDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
           +  +    ++    D H +  + KLY RELP PLLTY LYE +  A  
Sbjct: 76  SEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVS 123

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Length = 214

 Score =  118 bits (297), Expect = 8e-33
 Identities = 32/118 (27%), Positives = 65/118 (55%), Gaps = 2/118 (1%)

Query: 149 PQLNSLILVNPMK-PMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGA 207
           P L +L     +K  +F   L +        + + ++ C  A+ + G+D +G++RV+G  
Sbjct: 4   PSLKTLQEKGLIKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNL 63

Query: 208 SKVKRLKTCLDA-HCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
           + +++L+  ++    +  +D+   D HV+ G LK++ RELPEPL  Y+ +E ++ A +
Sbjct: 64  ATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIK 121

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Length = 201

 Score =  115 bits (290), Expect = 8e-32
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 6/105 (5%)

Query: 161 KPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDA- 219
             +F   L          +  P+      L Q G   +G+FR +      + LK  L++ 
Sbjct: 10  GQLFGISLPNICE--NDNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSG 67

Query: 220 HCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
             +  +        V+A VLK +LR +P  + +  LY+ W++   
Sbjct: 68  VEVHLDC---ESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMD 109

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Length = 231

 Score =  115 bits (291), Expect = 9e-32
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 7/111 (6%)

Query: 161 KPMFCQPLEEHLALIGCKIAFP---IELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCL 217
           +P++    +          +     I+ C  A+   G++E+GL+R+ G  S+V++L + L
Sbjct: 16  EPVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSIL 75

Query: 218 D----AHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
                A   + E   E++   +   LK YLR LP PL+ Y     ++ AA+
Sbjct: 76  MDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAK 126

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Length = 246

 Score =  115 bits (290), Expect = 2e-31
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 1/104 (0%)

Query: 161 KPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAH 220
              F  PL   +      I   IE C   +   G+  EG++RV+G  S+++ L+   D  
Sbjct: 51  SNYFGVPLTTVVTP-EKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQD 109

Query: 221 CIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
                   ++  + +AG +K +  ELP+PL+ Y +  D + A +
Sbjct: 110 HNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHK 153

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Length = 242

 Score =  115 bits (289), Expect = 3e-31
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 161 KPMFCQPLEEHL--ALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLD 218
              F   L+           I   +      L    +  EG+FR +     V+ ++   +
Sbjct: 42  NQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN 101

Query: 219 A-HCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
               + F+     + H+ A +LK +LRELPEPLLT+ LY   +    
Sbjct: 102 MGLPVDFDQ--YNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLN 146

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463

 Score =  118 bits (298), Expect = 4e-31
 Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 158 NPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCL 217
             +K ++   L   +     K    +++C R +   G++ EGL+RV+G +  ++ +K   
Sbjct: 264 KHVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAF 323

Query: 218 D--AHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
           D           +  D +++ G LKLY R+LP PL+TY  Y  ++ +A+
Sbjct: 324 DRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAK 372

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Length = 198

 Score =  112 bits (283), Expect = 7e-31
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 5/107 (4%)

Query: 161 KPMFCQPLEEHL--ALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLD 218
              F   L+           I   +      L    +  EG+FR +     V+ ++   +
Sbjct: 6   NQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN 65

Query: 219 A-HCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
               + F+       H+ A +LK +LRELPEPLLT+ LY   +    
Sbjct: 66  MGLPVDFDQ--YNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLN 110

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Length = 201

 Score =  108 bits (271), Expect = 5e-29
 Identities = 29/97 (29%), Positives = 45/97 (46%)

Query: 168 LEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDA 227
           L + ++     I   +  C   + Q G+ E GL+R++G    VK LK            +
Sbjct: 6   LADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLS 65

Query: 228 LEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
              D H +  +LK +LR L EPLLT+ L   ++ AA 
Sbjct: 66  KVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAE 102

>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Length = 271

 Score =  101 bits (254), Expect = 6e-26
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 7/107 (6%)

Query: 161 KPMFCQPLEEHLALIGC---KIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCL 217
             +F  P              I   +     +L +  +  EGLFR +G   ++K LK  +
Sbjct: 62  GKIFGVPFNALPHSAVPEYGHIPSFLVDACTSL-EDHIHTEGLFRKSGSVIRLKALKNKV 120

Query: 218 DAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
           D                +AG+LK + RELPEP+L   L+E  L A +
Sbjct: 121 DHGEGCLSS---APPCDIAGLLKQFFRELPEPILPADLHEALLKAQQ 164

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Length = 366

 Score =  101 bits (253), Expect = 3e-25
 Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 142 LHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLF 201
           + + + +       L      +   PL+E  +    ++   I L    L +    +E LF
Sbjct: 162 VPVTKLIDLEEDSFLEKEKSLLQMVPLDEGASERPLQVPKEIWLLVDHLFKYACHQEDLF 221

Query: 202 RVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLA 261
           +  G   +++++  CLD       + +    H +A  L ++L  LPEP++ Y LY+  L 
Sbjct: 222 QTPGMQEELQQIIDCLDTSI---PETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLD 278

Query: 262 AAR 264
           +A 
Sbjct: 279 SAY 281

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Length = 216

 Score = 96.6 bits (241), Expect = 2e-24
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 3/102 (2%)

Query: 163 MFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI 222
           +    L E  A         +     A+ + G++   L+R    +S +  L+  LD    
Sbjct: 10  LTLPDLAEQFAPPD-IAPPLLIKLVEAIEKKGLECSTLYRT-QSSSNLAELRQLLDCDTP 67

Query: 223 KFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
             +     D HVLA   K YL +LP P++  A+Y + ++ A 
Sbjct: 68  SVDLE-MIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAP 108

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Length = 214

 Score = 89.1 bits (221), Expect = 1e-21
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 13/98 (13%)

Query: 168 LEEHLALIGCKIAFPI-ELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFED 226
           L E  +     +A P+      A+ + G+D E  +R    A +                D
Sbjct: 30  LPEQFSPPD--VAPPLLVKLVEAIERTGLDSESHYRPELPAPRTD----------WSLSD 77

Query: 227 ALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
             ++D   LA  +K +L  LP PL+T     +   A R
Sbjct: 78  VDQWDTAALADGIKSFLLALPAPLVTPEASAEARRALR 115

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 34/215 (15%), Positives = 67/215 (31%), Gaps = 64/215 (29%)

Query: 48  HMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRAL 107
            ++ K +E  LL L      + +    N                + CKI     L TR  
Sbjct: 237 LLKSKPYENCLLVLLN----VQNAKAWNAFN-------------LSCKIL----LTTRFK 275

Query: 108 CQVRRLGNFVQDSYTTITLCHASRDVIKQHEEALL--HLN---ETLPQLNSLILVNPMKP 162
                L      + T I+L H S  +     ++LL  +L+   + LP+   ++  NP   
Sbjct: 276 QVTDFLSA---ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR--EVLTTNPR-- 328

Query: 163 MFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDA--- 219
                    L++I                + G+     ++          +++ L+    
Sbjct: 329 --------RLSIIA------------ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 220 ----HCIKFED--ALEYDAHVLAGVLKLYLRELPE 248
                   F+        AH+   +L L   ++ +
Sbjct: 369 AEYRKM--FDRLSVFPPSAHIPTILLSLIWFDVIK 401

>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens} Length = 240

 Score = 38.9 bits (90), Expect = 8e-04
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 16  FDESEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVN 75
           F+ES+E       M+  +  + E    +  ++      H ++   L E   +L   I   
Sbjct: 174 FEESKEL--AERSMFNFLENDVEQVSQLAVFIEAALDYHRQSTEILQELQSKLQMRISAA 231

Query: 76  PMKP 79
              P
Sbjct: 232 SSVP 235

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	264
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	99.93
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	99.93
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	99.93
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	99.93
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	99.93
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	99.92
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	99.92
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	99.92
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	99.92
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	99.91
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	99.9
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	99.89
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	99.88
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	99.88
3eap_A	271	RHO GTPase-activating protein 11A; GAP, structural	99.87
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	99.85
1zww_A	256	SH3-containing GRB2-like protein 2; coiled coil, t	97.73
2z0v_A	240	SH3-containing GRB2-like protein 3; helix bundle,	97.64

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}

Probab=99.93  E-value=7e-26  Score=196.88  Aligned_cols=106  Identities=26%  Similarity=0.593  Sum_probs=95.7

Q ss_pred             CCCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhcc-CCCCCcCCCCHHHHHH
Q psy16474        159 PMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAG  237 (264)
Q Consensus       159 ~~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~-~~~~~~~~~D~h~vas  237 (264)
                      ..+++||++|++++..++..||.+|.+|+++|+++|+++|||||++|+.++|++|+..+|+|. .++.+....|+|+||+
T Consensus        15 ~~~~vFG~~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~dvh~va~   94 (214)
T 3byi_A           15 IKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTG   94 (214)
T ss_dssp             CCCCSTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGCSHHHHHH
T ss_pred             CcCCccCCcHHHHHHHcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCcccccchHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999985 3433222249999999


Q ss_pred             HHHHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474        238 VLKLYLRELPEPLLTYALYEDWLAAAR  264 (264)
Q Consensus       238 lLK~yLReLPePLit~~ly~~~i~a~k  264 (264)
                      +||.|||+||+||+|+++|+.|+++++
T Consensus        95 lLK~flreLPePLl~~~l~~~~~~~~~  121 (214)
T 3byi_A           95 ALKMFFRELPEPLFPYSFFEQFVEAIK  121 (214)
T ss_dssp             HHHHHHHHSSSCSSCHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHh
Confidence            999999999999999999999998763

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}

Probab=99.93  E-value=6.2e-26  Score=195.59  Aligned_cols=104  Identities=28%  Similarity=0.563  Sum_probs=93.0

Q ss_pred             CCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhcc--CCCCCcCCCCHHHHHH
Q psy16474        160 MKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHC--IKFEDALEYDAHVLAG  237 (264)
Q Consensus       160 ~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~--~~~~~~~~~D~h~vas  237 (264)
                      .+++||++|++++...+..+|.+|.+|+++|+++|+++|||||++|+.++|++|+..+|++.  .++......|+|+||+
T Consensus         5 ~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~   84 (202)
T 2osa_A            5 VKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG   84 (202)
T ss_dssp             --CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHH
T ss_pred             CCCccCCChHHHHHHcCCCCCcHHHHHHHHHHHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999853  3443222359999999


Q ss_pred             HHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        238 VLKLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       238 lLK~yLReLPePLit~~ly~~~i~a~  263 (264)
                      +||.|||+||+||+|+++|+.|++++
T Consensus        85 lLK~flreLpePLl~~~~~~~~~~~~  110 (202)
T 2osa_A           85 ALKLYFRDLPIPLITYDAYPKFIESA  110 (202)
T ss_dssp             HHHHHHHTCSSCSSCTTTHHHHHHHH
T ss_pred             HHHHHHHhCCCccCCHHHHHHHHHHH
Confidence            99999999999999999999999875

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}

Probab=99.93  E-value=1.1e-25  Score=197.80  Aligned_cols=105  Identities=29%  Similarity=0.374  Sum_probs=95.5

Q ss_pred             CCCCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHH
Q psy16474        158 NPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAG  237 (264)
Q Consensus       158 ~~~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vas  237 (264)
                      ...+++||+||+++++++|..||.+|.+|+++|+++|+.+|||||++|+.++|++|++.+|.+.... +...+|+|+||+
T Consensus        15 ~~~~~vFGv~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~-~~~~~~~~~va~   93 (228)
T 3kuq_A           15 YFQGSVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCV-NYEGQSAYDVAD   93 (228)
T ss_dssp             BCTTSSTTCCHHHHHHHHSSSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCC-CCTTCCHHHHHH
T ss_pred             CCCCCEECCchHHHHHHcCCCCCHHHHHHHHHHHHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcC-CcccCCHHHHHH
Confidence            3467999999999999999999999999999999999999999999999999999999998764222 334579999999


Q ss_pred             HHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        238 VLKLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       238 lLK~yLReLPePLit~~ly~~~i~a~  263 (264)
                      +||.|||+||+||+|+++|+.|++++
T Consensus        94 lLK~fLReLPePLl~~~l~~~~~~~~  119 (228)
T 3kuq_A           94 MLKQYFRDLPEPLMTNKLSETFLQIY  119 (228)
T ss_dssp             HHHHHHHHSSSCTTCSSHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999875

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1

Probab=99.93  E-value=4.8e-26  Score=200.33  Aligned_cols=119  Identities=26%  Similarity=0.427  Sum_probs=75.9

Q ss_pred             CHHHHHHHHHHHHhhhhchhhhhhhhhcCCCCCCCCCcHHHHHhhhC---CCCcHHHHHHHHHHHhcCCCCCCcccccCC
Q psy16474        130 SRDVIKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIG---CKIAFPIELCTRALCQIGMDEEGLFRVTGG  206 (264)
Q Consensus       130 s~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~vFG~~L~~~l~~~~---~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~  206 (264)
                      |+++++.|+++|++.                .++||+||...+.++.   ..+|.+|.+|+++|+++|+.+|||||++|+
T Consensus         1 ~e~~~~~W~~~m~~~----------------~pvfgvpl~~~~~~~~~l~~~~p~iv~~ci~~le~~gl~~eGIfR~sG~   64 (231)
T 1f7c_A            1 SEEDRRLWMEAMDGR----------------EPVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGV   64 (231)
T ss_dssp             ----------------------------------------------CCSSHHHHHHHHHHHHHHHHHCTTCTTTTTSCCC
T ss_pred             ChHHHHHHHHHcCCC----------------CCccCCcchhccccccccCCcCccHHHHHHHHHHHhCCCCCCeeeeCCc
Confidence            577889999987743                3699999998876543   247899999999999999999999999999


Q ss_pred             HHHHHHHHH-HHhhcc---CCCCCcCCCCHHHHHHHHHHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474        207 ASKVKRLKT-CLDAHC---IKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR  264 (264)
Q Consensus       207 ~~~v~~Lk~-~ld~~~---~~~~~~~~~D~h~vaslLK~yLReLPePLit~~ly~~~i~a~k  264 (264)
                      .++|++|++ .+|.+.   +++.....+|+|+||++||.|||+||+||+|+++|+.|+++++
T Consensus        65 ~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh~va~lLK~flReLPePLl~~~ly~~~~~~~~  126 (231)
T 1f7c_A           65 NSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAK  126 (231)
T ss_dssp             HHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCcCCCcccCccccccccHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHh
Confidence            999999986 578763   3333333479999999999999999999999999999999864

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}

Probab=99.93  E-value=1.8e-25  Score=196.25  Aligned_cols=105  Identities=33%  Similarity=0.601  Sum_probs=93.7

Q ss_pred             CCCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccC-CCCC-cCCCCHHHHH
Q psy16474        159 PMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI-KFED-ALEYDAHVLA  236 (264)
Q Consensus       159 ~~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~-~~~~-~~~~D~h~va  236 (264)
                      ..+++||++|++++..+|..||.+|.+|+++|+++|+ +|||||++|+.++|++|++.||.|.. ++.. ...+|+|+||
T Consensus        17 ~~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dvh~va   95 (229)
T 3iug_A           17 QGERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVG   95 (229)
T ss_dssp             -CCCSTTSCHHHHHHHHCCSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCHHHHH
T ss_pred             CCCCeECcchHHHHHhcCCCCCHHHHHHHHHHHHcCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCccccccccchHHHH
Confidence            3678999999999999999999999999999999999 79999999999999999999999863 2221 1124999999


Q ss_pred             HHHHHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474        237 GVLKLYLRELPEPLLTYALYEDWLAAAR  264 (264)
Q Consensus       237 slLK~yLReLPePLit~~ly~~~i~a~k  264 (264)
                      ++||.|||+||+||+|+++|+.|+++++
T Consensus        96 ~lLK~fLreLPePLl~~~ly~~~~~~~~  123 (229)
T 3iug_A           96 SLCKLYFRELPNPLLTYQLYEKFSDAVS  123 (229)
T ss_dssp             HHHHHHHHHCSSCTTCTTTHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCcCHHHHHHHHHHHH
Confidence            9999999999999999999999998753

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*

Probab=99.92  E-value=4.8e-25  Score=189.46  Aligned_cols=104  Identities=26%  Similarity=0.329  Sum_probs=93.1

Q ss_pred             CCCCCCCCCcHHHHHhhhCC--CCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCC-CHHH
Q psy16474        158 NPMKPMFCQPLEEHLALIGC--KIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY-DAHV  234 (264)
Q Consensus       158 ~~~~~vFG~~L~~~l~~~~~--~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~-D~h~  234 (264)
                      +.+.++||++|++++.+.+.  .||.+|.+|+++|+++|+++|||||++|+.++|++|++.+|+|..  .+...+ |+|+
T Consensus         3 ~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~--~~~~~~~d~~~   80 (198)
T 1tx4_A            3 PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLP--VDFDQYNALHL   80 (198)
T ss_dssp             CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCC--CCGGGSSCTHH
T ss_pred             CCCCCccCCcHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHhCCCC--CCccccccchH
Confidence            34678999999999988764  899999999999999999999999999999999999999999862  122233 8999


Q ss_pred             HHHHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        235 LAGVLKLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       235 vaslLK~yLReLPePLit~~ly~~~i~a~  263 (264)
                      +|++||.|||+||+||+|+++|+.|++++
T Consensus        81 ~a~lLK~flreLpePLi~~~l~~~~~~~~  109 (198)
T 1tx4_A           81 PAVILKTFLRELPEPLLTFDLYPHVVGFL  109 (198)
T ss_dssp             HHHHHHHHHHHSSSCTTCGGGHHHHHTGG
T ss_pred             HHHHHHHHHHHCCCcCCCHHHHHHHHHHH
Confidence            99999999999999999999999999875

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}

Probab=99.92  E-value=4e-25  Score=196.25  Aligned_cols=107  Identities=25%  Similarity=0.432  Sum_probs=93.1

Q ss_pred             cCCCCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHH
Q psy16474        157 VNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLA  236 (264)
Q Consensus       157 ~~~~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~va  236 (264)
                      ....+++||++|++++. .+..||.+|.+|+++|+++|+.+|||||++|+.++|++|++.||.|.........+|+|+||
T Consensus        47 ~~~~~~vFGv~L~~~~~-~~~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~va  125 (246)
T 3fk2_A           47 ATWESNYFGVPLTTVVT-PEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVA  125 (246)
T ss_dssp             --CCCSSTTSCGGGGCC-SSSCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHHHH
T ss_pred             cccCCCeeCCCHHHHhc-CCCCCChHHHHHHHHHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHH
Confidence            34567899999999986 46689999999999999999999999999999999999999999985311122346999999


Q ss_pred             HHHHHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474        237 GVLKLYLRELPEPLLTYALYEDWLAAAR  264 (264)
Q Consensus       237 slLK~yLReLPePLit~~ly~~~i~a~k  264 (264)
                      ++||.|||+||+||+|+++|+.|+++++
T Consensus       126 ~lLK~fLReLPePLl~~~l~~~~~~~~~  153 (246)
T 3fk2_A          126 GAMKSFFSELPDPLVPYNMQIDLVEAHK  153 (246)
T ss_dssp             HHHHHHHHHSSSCSSCHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCccCCHHHHHHHHHHhc
Confidence            9999999999999999999999999753

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A

Probab=99.92  E-value=2.9e-25  Score=192.35  Aligned_cols=106  Identities=26%  Similarity=0.499  Sum_probs=93.3

Q ss_pred             cCCCCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccC-CCCCcCCCCHHHH
Q psy16474        157 VNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI-KFEDALEYDAHVL  235 (264)
Q Consensus       157 ~~~~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~-~~~~~~~~D~h~v  235 (264)
                      ....+++||++|++++.. +..||.+|.+|+++|+++|+.+|||||++|+.+++++|+..||+|.. ++. ...+|+|+|
T Consensus         6 ~~~~~~~FG~~L~~~~~~-~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~-~~~~d~~~v   83 (209)
T 2ee4_A            6 SGWESNYFGMPLQDLVTA-EKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLV-SMEVTVNAV   83 (209)
T ss_dssp             SSSCCSSSSSCHHHHSCS-SCCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHH-HHTCCHHHH
T ss_pred             CCCCCCeeCCcHHHHHhc-CCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcc-cCCCCHHHH
Confidence            345678999999998764 56899999999999999999999999999999999999999999852 221 124699999


Q ss_pred             HHHHHHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474        236 AGVLKLYLRELPEPLLTYALYEDWLAAAR  264 (264)
Q Consensus       236 aslLK~yLReLPePLit~~ly~~~i~a~k  264 (264)
                      |++||.|||+||+||+|+++|+.|+++++
T Consensus        84 a~lLK~flreLPePLi~~~l~~~~~~~~~  112 (209)
T 2ee4_A           84 AGALKAFFADLPDPLIPYSLHPELLEAAK  112 (209)
T ss_dssp             HHHHHHHHHHSSSCSSCTTTHHHHHHHHS
T ss_pred             HHHHHHHHHhCCCccCCHHHHHHHHHHHh
Confidence            99999999999999999999999998863

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}

Probab=99.92  E-value=9.1e-25  Score=187.89  Aligned_cols=102  Identities=23%  Similarity=0.296  Sum_probs=90.6

Q ss_pred             CCCCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHH
Q psy16474        158 NPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAG  237 (264)
Q Consensus       158 ~~~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vas  237 (264)
                      +..+++||++|+++++..  .+|.+|.+|+++|+++|+.+|||||++|+.+.+++|++.+|.|..  .+...+|+|+||+
T Consensus         7 ~~~~~vFG~~L~~~~~~~--~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~--~~~~~~d~~~va~   82 (201)
T 3msx_B            7 PMPGQLFGISLPNICEND--NLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVE--VHLDCESIFVIAS   82 (201)
T ss_dssp             ---CCCTTSCHHHHSGGG--CCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCC--CCTTSSCHHHHHH
T ss_pred             CCCCCeeCCcHHHHhcCC--CCCHHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHhccCCC--CCCCcccHHHHHH
Confidence            346789999999998754  599999999999999999999999999999999999999999852  1334579999999


Q ss_pred             HHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        238 VLKLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       238 lLK~yLReLPePLit~~ly~~~i~a~  263 (264)
                      +||.|||+||+||+|+++|+.|++++
T Consensus        83 lLK~flreLp~pLl~~~l~~~~~~~~  108 (201)
T 3msx_B           83 VLKDFLRNIPGSIFSSDLYDHWVSVM  108 (201)
T ss_dssp             HHHHHHHTSTTTTTTGGGHHHHHHGG
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999875

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*

Probab=99.91  E-value=3.5e-24  Score=189.74  Aligned_cols=104  Identities=26%  Similarity=0.338  Sum_probs=93.4

Q ss_pred             CCCCCCCCCcHHHHHhhhCC--CCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCC-CHHH
Q psy16474        158 NPMKPMFCQPLEEHLALIGC--KIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY-DAHV  234 (264)
Q Consensus       158 ~~~~~vFG~~L~~~l~~~~~--~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~-D~h~  234 (264)
                      ....++||++|++++.+.+.  .||.+|.+|+++|+++|+++|||||++|+.++|++|++.||+|..  .+...+ |+|+
T Consensus        39 ~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~--~~~~~~~dv~~  116 (242)
T 1ow3_A           39 PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLP--VDFDQYNELHL  116 (242)
T ss_dssp             CCTTCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCC--CCGGGSSCTHH
T ss_pred             CCCCCccCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHcCCCCCceeeeCCcHHHHHHHHHHHhcCCC--CCcccccchHH
Confidence            34578999999999988764  899999999999999999999999999999999999999999852  122334 9999


Q ss_pred             HHHHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        235 LAGVLKLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       235 vaslLK~yLReLPePLit~~ly~~~i~a~  263 (264)
                      +|++||.|||+||+||+|+++|+.|++++
T Consensus       117 va~lLK~flReLPePLl~~~ly~~~~~~~  145 (242)
T 1ow3_A          117 PAVILKTFLRELPEPLLTFDLYPHVVGFL  145 (242)
T ss_dssp             HHHHHHHHHHHSSSCTTCGGGHHHHHTGG
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999875

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1

Probab=99.90  E-value=1.4e-24  Score=189.19  Aligned_cols=102  Identities=23%  Similarity=0.289  Sum_probs=85.2

Q ss_pred             CCCCCCCcHHHHHhhh--CCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHH
Q psy16474        160 MKPMFCQPLEEHLALI--GCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAG  237 (264)
Q Consensus       160 ~~~vFG~~L~~~l~~~--~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vas  237 (264)
                      +..+||++|++++.+.  +..||.+|.+|+++|+++|+++|||||++|+.++ ++|++.||+|..++ +...+|+|+||+
T Consensus         4 d~~~fGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~-~~~~~dv~~va~   81 (216)
T 1pbw_A            4 DVEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNL-AELRQLLDCDTPSV-DLEMIDVHVLAD   81 (216)
T ss_dssp             --------CCCHHHHCCTTSCSCHHHHHHHHHHHHHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCC-CGGGBCHHHHHH
T ss_pred             ccccCCCcHHHHHhccCCCCCcCHHHHHHHHHHHHcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCC-CccccCHHHHHH
Confidence            3468999999999864  5689999999999999999999999999999999 99999999975322 334579999999


Q ss_pred             HHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        238 VLKLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       238 lLK~yLReLPePLit~~ly~~~i~a~  263 (264)
                      +||.|||+||+||+|+++|+.|++++
T Consensus        82 lLK~flReLPePLl~~~ly~~~~~~~  107 (216)
T 1pbw_A           82 AFKRYLLDLPNPVIPAAVYSEMISLA  107 (216)
T ss_dssp             HHHHHHHTSSSCSSCHHHHHHHHHHG
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999986

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}

Probab=99.89  E-value=1.3e-23  Score=181.17  Aligned_cols=98  Identities=30%  Similarity=0.409  Sum_probs=88.0

Q ss_pred             CCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCC-CHHHHHHHHHHHH
Q psy16474        165 CQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY-DAHVLAGVLKLYL  243 (264)
Q Consensus       165 G~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~-D~h~vaslLK~yL  243 (264)
                      |-+|++++..++..||.+|.+|+++|+++|+++|||||++|+.++|++|++.+|+|... .+...+ |+|+||++||.||
T Consensus         3 ~g~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~-~~~~~~~d~h~va~lLK~fl   81 (201)
T 2ovj_A            3 EGMLADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTV-PLLSKVDDIHAICSLLKDFL   81 (201)
T ss_dssp             CCCGGGGCCSSSSCCCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSC-CCGGGCCCHHHHHHHHHHHH
T ss_pred             CCcHHHHhcccCCCCChHHHHHHHHHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCC-ccccccCCHHHHHHHHHHHH
Confidence            34688888889999999999999999999999999999999999999999999998521 223345 9999999999999


Q ss_pred             hcCCCCCCChHhHHHHHHhh
Q psy16474        244 RELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       244 ReLPePLit~~ly~~~i~a~  263 (264)
                      |+||+||+|+++|+.|++++
T Consensus        82 reLpePLi~~~l~~~~~~~~  101 (201)
T 2ovj_A           82 RNLKEPLLTFRLNRAFMEAA  101 (201)
T ss_dssp             HTSSSCTTCTTTHHHHHHHH
T ss_pred             HhCCCCCCCHHHHHHHHHHH
Confidence            99999999999999999875

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=99.88  E-value=1e-22  Score=195.49  Aligned_cols=104  Identities=28%  Similarity=0.563  Sum_probs=94.0

Q ss_pred             CCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhcc--CCCCCcCCCCHHHHHH
Q psy16474        160 MKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHC--IKFEDALEYDAHVLAG  237 (264)
Q Consensus       160 ~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~--~~~~~~~~~D~h~vas  237 (264)
                      .+++||++|+++++.++..||.+|..|+++|+++|+.+|||||++|+.+.|++|+..||.+.  .++......|+|+||+
T Consensus       266 ~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~  345 (463)
T 3cxl_A          266 VKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG  345 (463)
T ss_dssp             CCCCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHH
T ss_pred             cccccccccchhhhccCCCCCeeHHHHHHHHHhcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchhhh
Confidence            46899999999999999999999999999999999999999999999999999999999853  3333222349999999


Q ss_pred             HHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        238 VLKLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       238 lLK~yLReLPePLit~~ly~~~i~a~  263 (264)
                      +||.|||+||+||||+++|+.|++++
T Consensus       346 lLK~flReLPePLi~~~ly~~~~~~~  371 (463)
T 3cxl_A          346 ALKLYFRDLPIPLITYDAYPKFIESA  371 (463)
T ss_dssp             HHHHHHHHCSSCSSCTTTHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999975

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}

Probab=99.88  E-value=1.7e-23  Score=182.44  Aligned_cols=96  Identities=23%  Similarity=0.166  Sum_probs=76.0

Q ss_pred             CCCCCCCCCcHHHHHhh--hCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHH
Q psy16474        158 NPMKPMFCQPLEEHLAL--IGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVL  235 (264)
Q Consensus       158 ~~~~~vFG~~L~~~l~~--~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~v  235 (264)
                      +...++||++|+++++.  .+..||.+|.+|+++|+++|+.+|||||++|+.     ||+  |.+.   .+...+|+|+|
T Consensus        17 n~~~~vFGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~Gl~~eGIfR~sG~~-----lr~--~~~~---~dl~~~dvh~v   86 (214)
T 2xs6_A           17 NLYFQSMGLTLPDLPEQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPA-----PRT--DWSL---SDVDQWDTAAL   86 (214)
T ss_dssp             --------CCCCCHHHHCCTTCCSCHHHHHHHHHHHHHCTTCSGGGCCSCCC-----CCC--CCCC---TTGGGCCHHHH
T ss_pred             CCCCcccCcCHHHHHHhhCCCCCCCHHHHHHHHHHHHhCCCCCCCeeeCHHH-----HHh--cccc---CCCccCCHHHH
Confidence            44568999999999984  456799999999999999999999999999998     433  2222   23335799999


Q ss_pred             HHHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        236 AGVLKLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       236 aslLK~yLReLPePLit~~ly~~~i~a~  263 (264)
                      |++||.|||+||+||+|+++|+.|++++
T Consensus        87 a~lLK~flReLPePLi~~~ly~~~i~~~  114 (214)
T 2xs6_A           87 ADGIKSFLLALPAPLVTPEASAEARRAL  114 (214)
T ss_dssp             HHHHHHHHHHSSSCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999986

>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}

Probab=99.87  E-value=8.2e-23  Score=183.83  Aligned_cols=103  Identities=28%  Similarity=0.305  Sum_probs=80.1

Q ss_pred             CCCCCCCCCcHHHHHhh---hCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHH
Q psy16474        158 NPMKPMFCQPLEEHLAL---IGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHV  234 (264)
Q Consensus       158 ~~~~~vFG~~L~~~l~~---~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~  234 (264)
                      ..++++||++|++++..   .+..||.+|.+|+.+|++ |+.+|||||++|+.+.|++|++.||.|...   ....|+|+
T Consensus        59 ~~~~~vFGv~L~~l~~~~~~~~~~iP~~l~~~~~~le~-gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~---~~~~~~~~  134 (271)
T 3eap_A           59 EIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLED-HIHTEGLFRKSGSVIRLKALKNKVDHGEGC---LSSAPPCD  134 (271)
T ss_dssp             --CCSSTTSCGGGSCEEEETTTEEEEHHHHHHHHHHGG-GTTC--------CHHHHHHHHHHHHHC--------CCCHHH
T ss_pred             CCCCCeeCCcHHHHHhhccCCCCCcChHHHHHHHHHHh-CCCCCCeeeeCCCHHHHHHHHHHHHcCCCC---cccccHHH
Confidence            34678999999998764   345699999999999985 799999999999999999999999998643   23569999


Q ss_pred             HHHHHHHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474        235 LAGVLKLYLRELPEPLLTYALYEDWLAAAR  264 (264)
Q Consensus       235 vaslLK~yLReLPePLit~~ly~~~i~a~k  264 (264)
                      ||++||.|||+||+||+|+++|+.|+++++
T Consensus       135 va~lLK~fLReLPePLl~~~ly~~~~~~~~  164 (271)
T 3eap_A          135 IAGLLKQFFRELPEPILPADLHEALLKAQQ  164 (271)
T ss_dssp             HHHHHHHHHHHSSSCSSCGGGHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCcccCCHHHHHHHHHHHH
Confidence            999999999999999999999999999763

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=99.85  E-value=2.7e-21  Score=180.81  Aligned_cols=84  Identities=27%  Similarity=0.499  Sum_probs=77.3

Q ss_pred             CCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCCCCCChHhHH
Q psy16474        178 KIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYE  257 (264)
Q Consensus       178 ~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPePLit~~ly~  257 (264)
                      .||.+|.+|+++|+++|+.+|||||++|+.+++++|++.+|.|...  + ...|+|++|++||.|||+||+||+|+++|+
T Consensus       198 ~iP~~v~~~i~~l~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~--~-~~~dvh~va~lLK~fLReLPePLi~~~ly~  274 (366)
T 3qis_A          198 QVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTSIPE--T-IPGSNHSVAEALLIFLEALPEPVICYELYQ  274 (366)
T ss_dssp             SSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHHCCCS--S-CCSCHHHHHHHHHHHHHHCSSCSSCHHHHH
T ss_pred             CcChHHHHHHHHHHhcCCCCCCeEeCCCCHHHHHHHHHHHcCCCCC--c-cccCHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence            6899999999999999999999999999999999999999998642  1 134999999999999999999999999999


Q ss_pred             HHHHhhC
Q psy16474        258 DWLAAAR  264 (264)
Q Consensus       258 ~~i~a~k  264 (264)
                      .|+++++
T Consensus       275 ~~~~~~~  281 (366)
T 3qis_A          275 RCLDSAY  281 (366)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhh
Confidence            9999864

>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A

Probab=97.73  E-value=4.2e-05  Score=67.52  Aligned_cols=61  Identities=18%  Similarity=0.290  Sum_probs=53.7

Q ss_pred             hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhccCCCCC
Q psy16474         19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKP   79 (264)
Q Consensus        19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~~~~~~~   79 (264)
                      ++++|.+.++|++|+++|.++..++..++..|.+||+++...|+...+.|.+.+...+..|
T Consensus       191 e~~~e~~~~~m~~l~~~e~e~~~~L~~~v~aQl~y~~~~~e~L~~l~~~l~~~~~~~~~~p  251 (256)
T 1zww_A          191 DESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQASSQP  251 (256)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            4588999999999999999999999999999999999999999999999999988887766

>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}

Probab=97.64  E-value=7.6e-05  Score=65.26  Aligned_cols=61  Identities=15%  Similarity=0.237  Sum_probs=57.5

Q ss_pred             hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhccCCCCC
Q psy16474         19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKP   79 (264)
Q Consensus        19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~~~~~~~   79 (264)
                      +++++.+..+|+++++.|.++...+.++++.|.+||+++.+.|+...+.|.+.+...+.+|
T Consensus       175 e~~~e~~~~~m~~~~~~~~e~l~~l~~~v~aQl~y~~~~~e~L~~l~~~l~~~~~~~~~~p  235 (240)
T 2z0v_A          175 EESKELAERSMFNFLENDVEQVSQLAVFIEAALDYHRQSTEILQELQSKLQMRISAASSVP  235 (240)
T ss_dssp             HHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4688999999999999999999999999999999999999999999999999988888777

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	264
d1xa6a1	196	a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal d	9e-20
d1f7ca_	191	a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxI	7e-16
d1pbwa_	184	a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Hu	4e-14
d1tx4a_	196	a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapi	4e-14

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (202), Expect = 9e-20
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 2/104 (1%)

Query: 163 MFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCL--DAH 220
           ++C  L   +     +    +++C R +   G+  EGL+RV+G    ++ +K     D  
Sbjct: 2   VYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGE 61

Query: 221 CIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
                  +  D +++ G LKLY R+LP P++TY  Y  ++ AA+
Sbjct: 62  KADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAK 105

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Length = 191

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 71.7 bits (175), Expect = 7e-16
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 5/92 (5%)

Query: 178 KIAFPI-ELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLD----AHCIKFEDALEYDA 232
            I F I + C  A+   G++E+GL+R+ G  S+V++L + L     A   + E   E++ 
Sbjct: 5   SIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEI 64

Query: 233 HVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
             +   LK YLR LP PL+ Y     ++ AA+
Sbjct: 65  KTITSALKTYLRMLPGPLMMYQFQRSFIKAAK 96

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (162), Expect = 4e-14
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 3/97 (3%)

Query: 166 QPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFE 225
             L E  A         +     A+ + G++   L+R    +S +  L+  LD      +
Sbjct: 2   PDLAEQFAP-PDIAPPLLIKLVEAIEKKGLECSTLYRT-QSSSNLAELRQLLDCDTPSVD 59

Query: 226 DALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAA 262
                D HVLA   K YL +LP P++  A+Y + ++ 
Sbjct: 60  LE-MIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISL 95

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 4e-14
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 3/105 (2%)

Query: 162 PMFCQPLEEHLALIGCKIAFP--IELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDA 219
             F   L+        +   P  +      L    +  EG+FR +     V+ ++   + 
Sbjct: 5   QQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNM 64

Query: 220 HCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
                 D      H+ A +LK +LRELPEPLLT+ LY   +    
Sbjct: 65  GLPVDFDQ-YNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLN 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	264
d1xa6a1	196	Beta-chimaerin, C-terminal domain {Human (Homo sap	99.92
d1tx4a_	196	p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 96	99.89
d1pbwa_	184	p85 alpha subunit RhoGAP domain {Human (Homo sapie	99.82
d1f7ca_	191	Graf {Chicken (Gallus gallus) [TaxId: 9031]}	99.8
d2d4ca1	237	Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.1

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.8e-25  Score=186.92  Aligned_cols=103  Identities=27%  Similarity=0.593  Sum_probs=92.6

Q ss_pred             CCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccC--CCCCcCCCCHHHHHHHH
Q psy16474        162 PMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI--KFEDALEYDAHVLAGVL  239 (264)
Q Consensus       162 ~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~--~~~~~~~~D~h~vaslL  239 (264)
                      .+||+||+.+++.++..||.+|.+|+++|+++|+++|||||++|+.+++++|+..+|++..  ++.....+|+|++|++|
T Consensus         1 kiFg~~L~~~~~~~~~~iP~iv~~~i~~l~~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~~d~~~va~~l   80 (196)
T d1xa6a1           1 KVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITGAL   80 (196)
T ss_dssp             CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHSCSSSTTTTTSCCCHHHHHHHHHHHSSTTTTSCCCSSSSCCTHHHHHHH
T ss_pred             CccCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHHhcCCCccccccccccchhHHHHHH
Confidence            4899999999999999999999999999999999999999999999999999999998643  22222235999999999


Q ss_pred             HHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474        240 KLYLRELPEPLLTYALYEDWLAAAR  264 (264)
Q Consensus       240 K~yLReLPePLit~~ly~~~i~a~k  264 (264)
                      |.|||+||+||+|.++|+.|+.+.+
T Consensus        81 K~fLr~Lp~pli~~~~~~~~~~~~~  105 (196)
T d1xa6a1          81 KLYFRDLPIPVITYDTYSKFIDAAK  105 (196)
T ss_dssp             HHHHHHCSSCTTCSTTHHHHHTTTT
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHh
Confidence            9999999999999999999987653

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.4e-23  Score=176.11  Aligned_cols=103  Identities=24%  Similarity=0.292  Sum_probs=91.1

Q ss_pred             CCCCCCCcHHHHHhhhC--CCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHH
Q psy16474        160 MKPMFCQPLEEHLALIG--CKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAG  237 (264)
Q Consensus       160 ~~~vFG~~L~~~l~~~~--~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vas  237 (264)
                      +..+||++|++++++++  ..||.+|.+|+++|+++|+++|||||++|+.+.++++++.+|.|... ......|+|+||+
T Consensus         3 ~~~~FG~~L~~l~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~-~~~~~~~~~~va~   81 (196)
T d1tx4a_           3 PNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPV-DFDQYNALHLPAV   81 (196)
T ss_dssp             TTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCC-CGGGSSCTHHHHH
T ss_pred             CCCCcCCCHHHHHhhCCCCCCCChHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhCCCCc-cccccccHHHHHH
Confidence            56799999999988754  56999999999999999999999999999999999999999998632 1112348999999


Q ss_pred             HHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474        238 VLKLYLRELPEPLLTYALYEDWLAAA  263 (264)
Q Consensus       238 lLK~yLReLPePLit~~ly~~~i~a~  263 (264)
                      +||.|||+||+||++.++|+.|+.+.
T Consensus        82 ~lK~fLr~Lp~pLi~~~~~~~~~~~~  107 (196)
T d1tx4a_          82 ILKTFLRELPEPLLTFDLYPHVVGFL  107 (196)
T ss_dssp             HHHHHHHHSSSCTTCGGGHHHHHTGG
T ss_pred             HHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            99999999999999999999999875

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.1e-21  Score=160.64  Aligned_cols=86  Identities=26%  Similarity=0.385  Sum_probs=76.8

Q ss_pred             CCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCCCCCChHh
Q psy16474        176 GCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYAL  255 (264)
Q Consensus       176 ~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPePLit~~l  255 (264)
                      +..||.+|.+|+++|+++|+++|||||++|+. ++++|+..+|+|.... +...+|+|++|++||.|||+||+||+|+++
T Consensus        11 ~~~vP~~l~~~i~~ie~~gl~~eGIFR~~g~~-~i~~l~~~~~~~~~~~-~~~~~~~~~va~lLK~flreLp~plip~~~   88 (184)
T d1pbwa_          11 PDIAPPLLIKLVEAIEKKGLECSTLYRTQSSS-NLAELRQLLDCDTPSV-DLEMIDVHVLADAFKRYLLDLPNPVIPAAV   88 (184)
T ss_dssp             TSCSCHHHHHHHHHHHHHHTTCTTTTSSCCSC-CTTHHHHHSCSSSSCC-CGGGBCHHHHHHHHHHHHHTSSSCSSCHHH
T ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCeeeCCchH-HHHHHHHHHhcCCCcc-CcccCCHHHHHHHHHHHHHhCCCccccHHH
Confidence            45699999999999999999999999999984 6999999999985433 344679999999999999999999999999


Q ss_pred             HHHHHHhh
Q psy16474        256 YEDWLAAA  263 (264)
Q Consensus       256 y~~~i~a~  263 (264)
                      |+.|++++
T Consensus        89 ~~~~~~~~   96 (184)
T d1pbwa_          89 YSEMISLA   96 (184)
T ss_dssp             HHHHHHHG
T ss_pred             HHHHHHHH
Confidence            99999864

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.80  E-value=5.3e-20  Score=154.62  Aligned_cols=86  Identities=31%  Similarity=0.517  Sum_probs=74.7

Q ss_pred             CcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCC----CCCcCCCCHHHHHHHHHHHHhcCCCCCCChH
Q psy16474        179 IAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIK----FEDALEYDAHVLAGVLKLYLRELPEPLLTYA  254 (264)
Q Consensus       179 iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~----~~~~~~~D~h~vaslLK~yLReLPePLit~~  254 (264)
                      .|.+|.+|+++|+++|+++|||||++|+..++++|++.++.+...    ......+|+|++|++||.|||+||+||+|++
T Consensus         7 ~~~iv~~ci~~l~~~gl~~eGIFR~~G~~~~v~~l~~~~~~~~~~~~~~~~~~~~~dv~~va~~lK~~lreLp~pLi~~~   86 (191)
T d1f7ca_           7 GFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQ   86 (191)
T ss_dssp             HHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCHH
T ss_pred             ccHHHHHHHHHHHHhCCCCCCeeeCCCCHHHHHHHHHHHhCcCcccccccccccccCHHHHHHHHHHHHHhCCCCccHHH
Confidence            367899999999999999999999999999999999999987532    1122357999999999999999999999999


Q ss_pred             hHHHHHHhhC
Q psy16474        255 LYEDWLAAAR  264 (264)
Q Consensus       255 ly~~~i~a~k  264 (264)
                      +|+.|+.+.+
T Consensus        87 ~~~~~~~~~~   96 (191)
T d1f7ca_          87 FQRSFIKAAK   96 (191)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998753

>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Endophilin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00037  Score=57.26  Aligned_cols=52  Identities=17%  Similarity=0.302  Sum_probs=49.4

Q ss_pred             hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhh
Q psy16474         19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNS   70 (264)
Q Consensus        19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~   70 (264)
                      ++++|.|...|..+.+++.++..++..++..|..||++++..|+...|.|.+
T Consensus       185 e~~~~~~~~~l~~l~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l~~  236 (237)
T d2d4ca1         185 DESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEE  236 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999865