Psyllid ID: psy16475

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFSKFIIII
Secondary Structure (PSIPRED)
cEEEEccccccHHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEEEEEEccccHHHHHccHHHHcHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHEEEEEEccccHHHHHHHHHHHEEc
Secondary Structure Prediction (SSPRO)
cEEEEccccccHHHHHHHcHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHHHEEEEcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEcEHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccEEEEEEEEcccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mcfvgarydhfpvmlshinlsrftptpsLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILylrytqpdmhrpikvslwVPISFVLICVFLVVtpileapreVGMAVLITLSgvpvyligvkwrdkpeafTRSFNALTYFVQKLMCFVgaryghfpamlshinisrftptpsLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILylrytqpdmhrpikvslwVPISFVLICVFLVVtpileapreVGMAVLITLSgvpvyligvkwrdkpeaftRSFSKFIIII
Flexible Loop (DISEMBL)
MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKwrdkpeaftrsfskfiiii
Low Complexity Region (SEG)
MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFSKFIIII
Disordered region (IsUnstruct)
*CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFSKFIII*
Disordered Region (DISOPRED)
MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFSKFIIII
Disordered Region (DISEMBL)
MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFSKFIIII
Disordered Region (DISPRO)
MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFSKFIIII
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFSKFIIII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	299	2.2.26 [Sep-21-2011]
Q9WTR6	502	Cystine/glutamate transpo	yes	N/A	0.501	0.298	0.403	5e-28
Q9QXW9	531	Large neutral amino acids	no	N/A	0.588	0.331	0.381	9e-28
Q7YQK4	503	Large neutral amino acids	yes	N/A	0.501	0.298	0.4	1e-27
Q01650	507	Large neutral amino acids	yes	N/A	0.501	0.295	0.393	2e-27
Q9WVR6	533	Large neutral amino acids	no	N/A	0.588	0.330	0.370	9e-27
Q9UHI5	535	Large neutral amino acids	no	N/A	0.508	0.284	0.424	1e-26
Q5RAE3	535	Large neutral amino acids	no	N/A	0.508	0.284	0.424	1e-26
Q9N1Q4	535	Large neutral amino acids	no	N/A	0.508	0.284	0.411	5e-26
Q5RAG7	501	Cystine/glutamate transpo	no	N/A	0.494	0.295	0.395	1e-25
Q9UPY5	501	Cystine/glutamate transpo	no	N/A	0.494	0.295	0.395	1e-25

>sp|Q9WTR6|XCT_MOUSE Cystine/glutamate transporter OS=Mus musculus GN=Slc7a11 PE=1 SV=1

 Score =  125 bits (313), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/151 (40%), Positives = 96/151 (63%), Gaps = 1/151 (0%)

Query: 140 SFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLL 199
           S N   + V +L  +V +R GH P +LS I++ + TP P+++ L+ L++ MLF+ D++ L
Sbjct: 330 SMNGGVFAVSRLF-YVASREGHLPEILSMIHVHKHTPLPAVIVLHPLTMVMLFSGDLYSL 388

Query: 200 ITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPR 259
           + + SF    F+ ++V G++YLRY +PDMHRP KV L++P  F   C+F+VV  +   P 
Sbjct: 389 LNFLSFARWLFMGLAVAGLIYLRYKRPDMHRPFKVPLFIPALFSFTCLFMVVLSLYSDPF 448

Query: 260 EVGMAVLITLSGVPVYLIGVKWRDKPEAFTR 290
             G+  LITL+GVP Y + + W  KP+ F R
Sbjct: 449 STGVGFLITLTGVPAYYLFIVWDKKPKWFRR 479

Sodium-independent, high-affinity exchange of anionic amino acids with high specificity for anionic form of cystine and glutamate.
Mus musculus (taxid: 10090)

>sp|Q9QXW9|LAT2_MOUSE Large neutral amino acids transporter small subunit 2 OS=Mus musculus GN=Slc7a8 PE=1 SV=1

 Score =  124 bits (311), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 69/181 (38%), Positives = 104/181 (57%), Gaps = 5/181 (2%)

Query: 3   FVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMI 62
           F GAR  H P +L+ I++ R TP P+L+F  + +L ML TSD++ LI Y  F+   F  +
Sbjct: 341 FAGAREGHLPSVLAMIHVKRCTPIPALLFTCLSTLLMLVTSDMYTLINYVGFINYLFYGV 400

Query: 63  SVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVP 122
           +V G + LR+ +PD+ RPIKVSL  PI ++L   FL++  +   P   G+ + I L+GVP
Sbjct: 401 TVAGQIVLRWKKPDIPRPIKVSLLFPIIYLLFWAFLLIFSLWSEPVVCGIGLAIMLTGVP 460

Query: 123 VYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISR-----FTPT 177
           VY +GV W+ KP+ F     +LT   QK+   V  + G+  A  +  ++       F PT
Sbjct: 461 VYFLGVYWQHKPKCFNDFIKSLTLVSQKMCVVVYPQEGNSGAEETTDDLEEQHKPIFKPT 520

Query: 178 P 178
           P
Sbjct: 521 P 521

Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.

Mus musculus (taxid: 10090)

>sp|Q7YQK4|LAT1_RABIT Large neutral amino acids transporter small subunit 1 OS=Oryctolagus cuniculus GN=SLC7A5 PE=1 SV=1

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 93/150 (62%)

Query: 3   FVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMI 62
           FVG+R  H P +LS I+    TP PSLVF   ++L   F+ D+F +I + SF     + +
Sbjct: 347 FVGSREGHLPSVLSMIHPQLLTPVPSLVFTCAMTLLYAFSRDIFSVINFFSFFNWLCVAL 406

Query: 63  SVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVP 122
           ++ G+++LRY +P++ RPIKV+L +P+ F+L C+FL+     + P E G+   I LSG+P
Sbjct: 407 AIIGMMWLRYKKPELERPIKVNLALPVFFILACLFLIAVSFWKTPVECGIGFTIILSGLP 466

Query: 123 VYLIGVKWRDKPEAFTRSFNALTYFVQKLM 152
           VY  GV W++KP+   +   + T   QKLM
Sbjct: 467 VYFFGVWWKNKPKWLLQGIFSATALCQKLM 496

Sodium-independent, high-affinity transport of large neutral amino acids such as phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Involved in cellular amino acid uptake. Acts as an amino acid exchanger. Involved in the transport of L-DOPA across the blood-brain barrier, and that of thyroid hormones triiodothyronine (T3) and thyroxine (T4) across the cell membrane. Plays a role in neuronal cell proliferation (neurogenesis) in brain. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Mediates blood-to-retina L-leucine transport across the inner blood-retinal barrier which in turn may play a key role in maintaining large neutral amino acids as well as neurotransmitters in the neural retina. Acts as the major transporter of tyrosine in fibroblasts.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q01650|LAT1_HUMAN Large neutral amino acids transporter small subunit 1 OS=Homo sapiens GN=SLC7A5 PE=1 SV=2

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 94/150 (62%)

Query: 3   FVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMI 62
           FVG+R  H P +LS I+    TP PSLVF  +++L   F+ D+F +I + SF     + +
Sbjct: 351 FVGSREGHLPSILSMIHPQLLTPVPSLVFTCVMTLLYAFSKDIFSVINFFSFFNWLCVAL 410

Query: 63  SVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVP 122
           ++ G+++LR+ +P++ RPIKV+L +P+ F+L C+FL+     + P E G+   I LSG+P
Sbjct: 411 AIIGMIWLRHRKPELERPIKVNLALPVFFILACLFLIAVSFWKTPVECGIGFTIILSGLP 470

Query: 123 VYLIGVKWRDKPEAFTRSFNALTYFVQKLM 152
           VY  GV W++KP+   +   + T   QKLM
Sbjct: 471 VYFFGVWWKNKPKWLLQGIFSTTVLCQKLM 500

Sodium-independent, high-affinity transport of large neutral amino acids such as phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Involved in cellular amino acid uptake. Acts as an amino acid exchanger. Involved in the transport of L-DOPA across the blood-brain barrier, and that of thyroid hormones triiodothyronine (T3) and thyroxine (T4) across the cell membrane in tissues such as placenta. Plays a role in neuronal cell proliferation (neurogenesis) in brain. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. May play an important role in high-grade gliomas. Mediates blood-to-retina L-leucine transport across the inner blood-retinal barrier which in turn may play a key role in maintaining large neutral amino acids as well as neurotransmitters in the neural retina. Acts as the major transporter of tyrosine in fibroblasts.

Homo sapiens (taxid: 9606)

>sp|Q9WVR6|LAT2_RAT Large neutral amino acids transporter small subunit 2 OS=Rattus norvegicus GN=Slc7a8 PE=1 SV=1

 Score =  120 bits (302), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 67/181 (37%), Positives = 102/181 (56%), Gaps = 5/181 (2%)

Query: 3   FVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMI 62
           F GAR  H P +L+ I++ R TP P+L+F  + +L ML TSD++ LI Y  F+   F  +
Sbjct: 343 FAGAREGHLPSVLAMIHVKRCTPIPALLFTCLSTLLMLVTSDMYTLINYVGFINYLFYGV 402

Query: 63  SVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVP 122
           +V G + LR+ +PD+ RPIK+SL  PI ++L   FL++  +   P   G+ + I L+GVP
Sbjct: 403 TVAGQIVLRWKKPDIPRPIKISLLFPIIYLLFWAFLLIFSLWSEPVVCGIGLAIMLTGVP 462

Query: 123 VYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISR-----FTPT 177
           VY +GV W+ KP+ F     +LT   QK+   V  + G      +  ++       F PT
Sbjct: 463 VYFLGVYWQHKPKCFNDFIESLTLVSQKMCVVVYPQEGDSGTEETIDDVEEQHKPIFQPT 522

Query: 178 P 178
           P
Sbjct: 523 P 523

Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.

Rattus norvegicus (taxid: 10116)

>sp|Q9UHI5|LAT2_HUMAN Large neutral amino acids transporter small subunit 2 OS=Homo sapiens GN=SLC7A8 PE=1 SV=1

 Score =  120 bits (300), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 94/153 (61%), Gaps = 1/153 (0%)

Query: 3   FVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMI 62
           F GAR  H P +L+ I++ R TP P+L+F  I +L ML TSD++ LI Y  F+   F  +
Sbjct: 342 FAGAREGHLPSVLAMIHVKRCTPIPALLFTCISTLLMLVTSDMYTLINYVGFINYLFYGV 401

Query: 63  SVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVP 122
           +V G + LR+ +PD+ RPIK++L  PI ++L   FL+V  +   P   G+ + I L+GVP
Sbjct: 402 TVAGQIVLRWKKPDIPRPIKINLLFPIIYLLFWAFLLVFSLWSEPVVCGIGLAIMLTGVP 461

Query: 123 VYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFV 155
           VY +GV W+ KP+ F+     LT   QK MC V
Sbjct: 462 VYFLGVYWQHKPKCFSDFIELLTLVSQK-MCVV 493

Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.

Homo sapiens (taxid: 9606)

>sp|Q5RAE3|LAT2_PONAB Large neutral amino acids transporter small subunit 2 OS=Pongo abelii GN=SLC7A8 PE=2 SV=2

 Score =  120 bits (300), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 94/153 (61%), Gaps = 1/153 (0%)

Query: 3   FVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMI 62
           F GAR  H P +L+ I++ R TP P+L+F  I +L ML TSD++ LI Y  F+   F  +
Sbjct: 342 FAGAREGHLPSVLAMIHVKRCTPIPALLFTCISTLLMLVTSDMYTLINYVGFINYLFYGV 401

Query: 63  SVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVP 122
           +V G + LR+ +PD+ RPIK++L  PI ++L   FL+V  +   P   G+ + I L+GVP
Sbjct: 402 TVAGQIVLRWKKPDIPRPIKINLLFPIIYLLFWAFLLVFSLWSEPVVCGIGLAIMLTGVP 461

Query: 123 VYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFV 155
           VY +GV W+ KP+ F+     LT   QK MC V
Sbjct: 462 VYFLGVYWQHKPKCFSDFIELLTLVSQK-MCVV 493

Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.

Pongo abelii (taxid: 9601)

>sp|Q9N1Q4|LAT2_RABIT Large neutral amino acids transporter small subunit 2 OS=Oryctolagus cuniculus GN=SLC7A8 PE=1 SV=1

 Score =  118 bits (296), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 93/153 (60%), Gaps = 1/153 (0%)

Query: 3   FVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMI 62
           F GAR  H P +L+ I++ R TP P+L+F  + +L ML TSD++ LI Y  F+   F  +
Sbjct: 342 FAGAREGHLPSVLAMIHVKRCTPIPALLFTCLSTLLMLVTSDMYTLINYVGFINYLFYGV 401

Query: 63  SVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVP 122
           +V G + LR+ +PD+ RPIK++L  PI ++L   FL++  +   P   G+ + I L+GVP
Sbjct: 402 TVAGQIVLRWKKPDIPRPIKINLLFPIIYLLFWAFLLIFSLWSEPVVCGIGLAIMLTGVP 461

Query: 123 VYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFV 155
           VY +GV W+ KP+ F      LT   QK MC V
Sbjct: 462 VYFLGVYWQHKPKCFNDFIELLTLVSQK-MCVV 493

Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q5RAG7|XCT_PONAB Cystine/glutamate transporter OS=Pongo abelii GN=SLC7A11 PE=2 SV=1

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 91/149 (61%), Gaps = 1/149 (0%)

Query: 140 SFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLL 199
           S N   + V +L  +V +R GH P +LS I++ + TP P+++ L+ L++ MLF+ D+  L
Sbjct: 330 SMNGGVFAVSRLF-YVASREGHLPEILSMIHVRKHTPLPAVIVLHPLTMIMLFSGDLDSL 388

Query: 200 ITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPR 259
           + + SF    FI ++V G++YLRY  PDMHRP KV L++P  F   C+F+V   +   P 
Sbjct: 389 LNFLSFARWLFIGLAVAGLIYLRYKCPDMHRPFKVPLFIPALFSFTCLFMVALSLYSDPF 448

Query: 260 EVGMAVLITLSGVPVYLIGVKWRDKPEAF 288
             G+  +ITL+GVP Y + + W  KP  F
Sbjct: 449 STGIGSVITLTGVPAYYLFIIWDKKPRWF 477

Sodium-independent, high-affinity exchange of anionic amino acids with high specificity for anionic form of cystine and glutamate.

Pongo abelii (taxid: 9601)

>sp|Q9UPY5|XCT_HUMAN Cystine/glutamate transporter OS=Homo sapiens GN=SLC7A11 PE=1 SV=1

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 91/149 (61%), Gaps = 1/149 (0%)

Query: 140 SFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLL 199
           S N   + V +L  +V +R GH P +LS I++ + TP P+++ L+ L++ MLF+ D+  L
Sbjct: 330 SMNGGVFAVSRLF-YVASREGHLPEILSMIHVRKHTPLPAVIVLHPLTMIMLFSGDLDSL 388

Query: 200 ITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPR 259
           + + SF    FI ++V G++YLRY  PDMHRP KV L++P  F   C+F+V   +   P 
Sbjct: 389 LNFLSFARWLFIGLAVAGLIYLRYKCPDMHRPFKVPLFIPALFSFTCLFMVALSLYSDPF 448

Query: 260 EVGMAVLITLSGVPVYLIGVKWRDKPEAF 288
             G+  +ITL+GVP Y + + W  KP  F
Sbjct: 449 STGIGFVITLTGVPAYYLFIIWDKKPRWF 477

Sodium-independent, high-affinity exchange of anionic amino acids with high specificity for anionic form of cystine and glutamate.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
242004919	476	large neutral amino acids transporter, p	0.491	0.308	0.721	3e-55
345488879	482	PREDICTED: Y+L amino acid transporter 2-	0.521	0.323	0.689	1e-54
170061438	514	amino acids transporter [Culex quinquefa	0.508	0.295	0.651	1e-52
322778697	498	hypothetical protein SINV_02824 [Solenop	0.521	0.313	0.639	3e-50
340718264	501	PREDICTED: Y+L amino acid transporter 2-	0.505	0.301	0.655	5e-50
328781277	788	PREDICTED: Y+L amino acid transporter 2-	0.505	0.191	0.642	9e-50
380028113	501	PREDICTED: Y+L amino acid transporter 2-	0.505	0.301	0.635	1e-49
350401881	501	PREDICTED: Y+L amino acid transporter 2-	0.505	0.301	0.655	2e-49
312378060	403	hypothetical protein AND_10473 [Anophele	0.505	0.374	0.622	4e-49
119112328	528	AGAP003425-PA [Anopheles gambiae str. PE	0.505	0.285	0.615	2e-48

>gi|242004919|ref|XP_002423323.1| large neutral amino acids transporter, putative [Pediculus humanus corporis] gi|212506342|gb|EEB10585.1| large neutral amino acids transporter, putative [Pediculus humanus corporis]

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 106/147 (72%), Positives = 125/147 (85%)

Query: 152 MCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFI 211
           MCFVGARYGHFPAMLSHINI RFTPTPSLVFL ILSL ML TSDV++LITYSS VES FI
Sbjct: 325 MCFVGARYGHFPAMLSHINIKRFTPTPSLVFLMILSLIMLCTSDVYVLITYSSIVESFFI 384

Query: 212 MISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSG 271
           M+SV GILYLR+T+P+M RPIKVSLWVP++FV+IC  LV+ P  E P EVG+ +LITL+G
Sbjct: 385 MLSVAGILYLRWTKPNMERPIKVSLWVPVTFVIICALLVIIPCFERPIEVGVGILITLTG 444

Query: 272 VPVYLIGVKWRDKPEAFTRSFSKFIII 298
           +P YLIGVKW++KP+ F  S  ++III
Sbjct: 445 IPCYLIGVKWQNKPKWFLNSLREYIII 471

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345488879|ref|XP_003426001.1| PREDICTED: Y+L amino acid transporter 2-like isoform 2 [Nasonia vitripennis] gi|345488881|ref|XP_003426002.1| PREDICTED: Y+L amino acid transporter 2-like isoform 3 [Nasonia vitripennis] gi|345488883|ref|XP_001600415.2| PREDICTED: Y+L amino acid transporter 2-like isoform 1 [Nasonia vitripennis]

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 109/158 (68%), Positives = 123/158 (77%), Gaps = 2/158 (1%)

Query: 1   MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFI 60
           MCFVGAR  HFP MLSHIN+ R+TPTP+LVFL ILSL ML TSDVF+LITY S VES FI
Sbjct: 320 MCFVGARNGHFPAMLSHINVKRYTPTPALVFLCILSLIMLCTSDVFVLITYCSIVESTFI 379

Query: 61  MISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSG 120
           M+SV GILYLRY  PDM RPIKVSLW+PI+FVLIC FLV+ P  E P EVGM VLITLSG
Sbjct: 380 MLSVAGILYLRYKCPDMERPIKVSLWIPITFVLICAFLVLVPCYERPVEVGMGVLITLSG 439

Query: 121 VPVYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFVGAR 158
           +P YLIGV W++KP  F      +T+ VQKL  F+ AR
Sbjct: 440 IPAYLIGVAWKNKPAKFQEINAKITHVVQKL--FLSAR 475

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170061438|ref|XP_001866233.1| amino acids transporter [Culex quinquefasciatus] gi|167879660|gb|EDS43043.1| amino acids transporter [Culex quinquefasciatus]

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/152 (65%), Positives = 123/152 (80%)

Query: 1   MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFI 60
           MCFVGAR  H P +LSHIN++R+TP PSLVFL ILSLF LF SDV++LITYSS VES FI
Sbjct: 352 MCFVGARNGHMPEILSHINVNRYTPMPSLVFLCILSLFYLFISDVYVLITYSSIVESFFI 411

Query: 61  MISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSG 120
           M+SV  +LY RYT+PD++RPIKV LW+P+ FV+IC FL+V P   AP EVGM VLITL+G
Sbjct: 412 MLSVSAVLYFRYTRPDINRPIKVQLWIPVVFVIICAFLIVVPCYVAPYEVGMGVLITLAG 471

Query: 121 VPVYLIGVKWRDKPEAFTRSFNALTYFVQKLM 152
           +PVY IGV W+DKPE+F R+  ++T F QK++
Sbjct: 472 IPVYWIGVAWKDKPESFERALRSVTQFCQKML 503

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322778697|gb|EFZ09116.1| hypothetical protein SINV_02824 [Solenopsis invicta]

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 101/158 (63%), Positives = 120/158 (75%), Gaps = 2/158 (1%)

Query: 1   MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFI 60
           MCFVGAR  HFP MLSHIN+SR TPTP+L+FL ILSL ML TSD+F+LITY S VES FI
Sbjct: 337 MCFVGARNGHFPCMLSHINMSRLTPTPALIFLCILSLIMLCTSDIFVLITYCSIVESFFI 396

Query: 61  MISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSG 120
           MISV GIL+LRY +P+M RPIKV LW+PI FV +C FLV+ P  E P EVGM +LIT+SG
Sbjct: 397 MISVAGILWLRYKRPNMERPIKVPLWIPILFVALCAFLVIVPCYERPYEVGMGILITMSG 456

Query: 121 VPVYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFVGAR 158
           +P Y +GV W++KP  F +     TY VQKL  F+ AR
Sbjct: 457 IPAYFLGVAWKNKPLWFQKINIKATYAVQKL--FLSAR 492

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718264|ref|XP_003397591.1| PREDICTED: Y+L amino acid transporter 2-like [Bombus terrestris]

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 99/151 (65%), Positives = 118/151 (78%)

Query: 1   MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFI 60
           MCFVGAR  HFP MLSHIN+SRFTPTP+LVFL ILSL ML TSD+F+LITY S VES FI
Sbjct: 341 MCFVGARNGHFPSMLSHINISRFTPTPALVFLCILSLVMLCTSDIFVLITYCSIVESFFI 400

Query: 61  MISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSG 120
           M+SV G+L+LRY QP+M RPIK+ LW+PI+FV IC FLV  P  + P EVG+  LITLSG
Sbjct: 401 MLSVSGVLWLRYKQPNMSRPIKMPLWIPITFVCICAFLVFFPSYQRPYEVGIGALITLSG 460

Query: 121 VPVYLIGVKWRDKPEAFTRSFNALTYFVQKL 151
           +P Y IGV+W++KP  F R    +TY +QKL
Sbjct: 461 IPAYFIGVRWKNKPLWFQRFILEITYIIQKL 491

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781277|ref|XP_001123261.2| PREDICTED: Y+L amino acid transporter 2-like [Apis mellifera]

 Score =  203 bits (516), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 97/151 (64%), Positives = 119/151 (78%)

Query: 1   MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFI 60
           MCFVGAR  HFP MLSHIN+SRFTPTP+L+FL +LSL ML TSD+F+LITY S VES FI
Sbjct: 628 MCFVGARNGHFPSMLSHINISRFTPTPALIFLCMLSLIMLCTSDIFVLITYCSIVESFFI 687

Query: 61  MISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSG 120
           M+SV G+L+LRY QP+M+RPIK+ LW+PI+FV IC FLV  P  + P EVG+  LITLSG
Sbjct: 688 MLSVAGVLWLRYKQPNMNRPIKMPLWIPITFVAICAFLVFVPCYQRPYEVGIGALITLSG 747

Query: 121 VPVYLIGVKWRDKPEAFTRSFNALTYFVQKL 151
           +P Y IGVKW+++P  F +    +TY VQKL
Sbjct: 748 IPAYFIGVKWKNRPLWFQQFNLKITYTVQKL 778

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028113|ref|XP_003697755.1| PREDICTED: Y+L amino acid transporter 2-like [Apis florea]

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 96/151 (63%), Positives = 119/151 (78%)

Query: 1   MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFI 60
           MCFVGAR  HFP MLSHIN+SRFTPTP+L+FL +LSL ML TSD+F+LITY S VES FI
Sbjct: 341 MCFVGARNGHFPSMLSHINISRFTPTPALIFLCMLSLIMLCTSDIFVLITYCSIVESFFI 400

Query: 61  MISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSG 120
           M+SV G+L+LRY QP+M+RPIK+ LW+P++FV IC FLV  P  + P EVG+  LITLSG
Sbjct: 401 MLSVAGVLWLRYKQPNMNRPIKMPLWIPVTFVAICAFLVFVPCYQRPYEVGIGALITLSG 460

Query: 121 VPVYLIGVKWRDKPEAFTRSFNALTYFVQKL 151
           +P Y IGVKW+++P  F +    +TY VQKL
Sbjct: 461 IPAYFIGVKWKNRPLWFQQFNLKITYTVQKL 491

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401881|ref|XP_003486293.1| PREDICTED: Y+L amino acid transporter 2-like [Bombus impatiens]

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/151 (65%), Positives = 118/151 (78%)

Query: 1   MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFI 60
           MCFVGAR  HFP MLSHIN+SRFTPTP+LVFL ILSL ML TSD+F+LITY S VES FI
Sbjct: 341 MCFVGARNGHFPSMLSHINISRFTPTPALVFLCILSLVMLCTSDIFVLITYCSIVESFFI 400

Query: 61  MISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSG 120
           M+SV G+L+LRY QP+M RPIK+ LW+PI+FV IC FLV  P  + P EVG+  LITLSG
Sbjct: 401 MLSVSGVLWLRYKQPNMSRPIKMPLWIPITFVCICAFLVFFPSYQRPYEVGIGALITLSG 460

Query: 121 VPVYLIGVKWRDKPEAFTRSFNALTYFVQKL 151
           +P Y IGV+W++KP  F +    +TY VQKL
Sbjct: 461 IPAYFIGVRWKNKPLWFQQLILEITYTVQKL 491

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312378060|gb|EFR24734.1| hypothetical protein AND_10473 [Anopheles darlingi]

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 94/151 (62%), Positives = 118/151 (78%)

Query: 1   MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFI 60
           MCFVGAR  H P +LSHIN++RFTP PSLVFL +LSLF LF SDV++LITYSS VE+ FI
Sbjct: 240 MCFVGARNGHMPEILSHINVNRFTPMPSLVFLCLLSLFYLFISDVYVLITYSSIVETFFI 299

Query: 61  MISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSG 120
           M+SV  +LY RYT+PD+HRPI+V LWVP  FV++CVFL++ P   AP EVGM + +TL+G
Sbjct: 300 MLSVSAVLYFRYTRPDIHRPIRVPLWVPTFFVIVCVFLLIVPCYAAPYEVGMGIALTLAG 359

Query: 121 VPVYLIGVKWRDKPEAFTRSFNALTYFVQKL 151
           +PVY IGV W+ KP+AF     A+T F QK+
Sbjct: 360 IPVYYIGVAWKTKPKAFNDVLTAVTQFCQKM 390

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119112328|ref|XP_311711.3| AGAP003425-PA [Anopheles gambiae str. PEST] gi|116129893|gb|EAA07276.3| AGAP003425-PA [Anopheles gambiae str. PEST]

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/151 (61%), Positives = 116/151 (76%)

Query: 1   MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFI 60
           MCFVGAR  H P +LSHIN++RFTP PSLVFL  LSL  LF SDV++LITYSS VES FI
Sbjct: 366 MCFVGARNGHMPEILSHINVNRFTPMPSLVFLCALSLLYLFISDVYVLITYSSIVESFFI 425

Query: 61  MISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSG 120
           M+SV  +LY RYT+PD+HRPI+V LWVP  F +IC FL++ P   AP EVGM V +TL+G
Sbjct: 426 MLSVSAVLYFRYTRPDIHRPIRVPLWVPTVFCIICAFLLIVPCYVAPYEVGMGVALTLAG 485

Query: 121 VPVYLIGVKWRDKPEAFTRSFNALTYFVQKL 151
           +PVY +GV W++KP+AFT +   +T F QK+
Sbjct: 486 IPVYYVGVAWKNKPKAFTDALARVTQFCQKM 516

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
FB|FBgn0039487	517	gb "genderblind" [Drosophila m	0.521	0.301	0.550	3.9e-44
FB|FBgn0002778	499	mnd "minidiscs" [Drosophila me	0.802	0.480	0.370	3.5e-38
UNIPROTKB|Q9TU26	505	LAT "Blood-brain barrier large	0.762	0.451	0.344	1.3e-31
RGD|1309275	502	Slc7a11 "solute carrier family	0.759	0.452	0.341	3.7e-31
MGI|MGI:1347355	502	Slc7a11 "solute carrier family	0.759	0.452	0.341	4.8e-31
UNIPROTKB|G3N179	491	SLC7A11 "Uncharacterized prote	0.762	0.464	0.330	8.8e-31
UNIPROTKB|F1N5E3	504	SLC7A11 "Uncharacterized prote	0.762	0.452	0.330	1.2e-30
ZFIN|ZDB-GENE-030616-586	531	slc7a8b "solute carrier family	0.722	0.406	0.345	2.4e-30
UNIPROTKB|B4DTV6	311	SLC7A8 "Large neutral amino ac	0.735	0.707	0.341	7.9e-30
UNIPROTKB|F1PEX1	503	SLC7A11 "Uncharacterized prote	0.775	0.461	0.320	1.3e-29

FB|FBgn0039487 gb "genderblind" [Drosophila melanogaster (taxid:7227)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 87/158 (55%), Positives = 117/158 (74%)

Query:     1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFI 60
             +CFVGAR  H P +LSHI++  +TP PSLVFL  LS+ ML  SDV++LITY+S VES FI
Sbjct:   357 ICFVGARNGHMPAILSHISVKSYTPLPSLVFLCFLSIVMLVVSDVYVLITYASIVESFFI 416

Query:    61 MISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSG 120
             M+SV  +LY RYT+P M RPIKV++W+P  FV++C FLVV PI  AP EVGM VLIT+ G
Sbjct:   417 MLSVSAVLYFRYTRPCMERPIKVAMWIPALFVIVCAFLVVVPIYVAPYEVGMGVLITIIG 476

Query:   121 VPVYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFVGAR 158
             +P Y +GV W++KP+    + +++T+  QKL  F+ A+
Sbjct:   477 IPFYYVGVVWKNKPKWVQSTIDSVTFTCQKL--FMSAK 512

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0014047 "glutamate secretion" evidence=IMP

GO:0007619 "courtship behavior" evidence=NAS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0008049 "male courtship behavior" evidence=IMP

GO:0007635 "chemosensory behavior" evidence=IMP

GO:0006868 "glutamine transport" evidence=IMP

GO:0015734 "taurine transport" evidence=IMP

GO:0015813 "L-glutamate transport" evidence=IMP

FB|FBgn0002778 mnd "minidiscs" [Drosophila melanogaster (taxid:7227)]

 Score = 381 (139.2 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
 Identities = 97/262 (37%), Positives = 148/262 (56%)

Query:    54 FVESAFI--MISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEA 106
             ++  AF   + S  G  YL +   ++  P + +   + IS  ++ V  ++T I    + +
Sbjct:   233 YIALAFYSGLFSYSGWNYLNFVTEELKDPYRNLPKAICISMPVVTVIYMITNIAYFSVLS 292

Query:   107 PREV--GMAVLITLSGVPVYLIG-VKWRDKPEAFTRS-FNALT--YFVQKLMCFVGARYG 160
             P E+    AV +T       ++G + W   P A   S F +L    F    + FVGAR G
Sbjct:   293 PDEILSSDAVAVTFGDK---MLGYMSWI-MPFAVACSTFGSLNGAIFASSRLFFVGARNG 348

Query:   161 HFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILY 220
             H PA +S IN++  TP PSL+FL +L+L +LF  DV++LI Y S+VE+ F +ISV G+L+
Sbjct:   349 HLPAAISLINVNCLTPVPSLIFLGVLTLLLLFIEDVYVLINYVSYVEALFTLISVSGLLW 408

Query:   221 LRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIG-- 278
             +RY QP   RPIKV+L +PI ++++C+FLV+    + P  VG+  +I LSG+PVY +   
Sbjct:   409 MRYKQPKTERPIKVNLALPIIYLIVCLFLVIFSCTQTPYVVGIGTIIILSGIPVYYLTIH 468

Query:   279 --VKW-RDKPEAFTRSFSKFII 297
               VKW  D  +A     SKF I
Sbjct:   469 KPVKWLADTSQAINLWCSKFFI 490

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;NAS;TAS

GO:0006865 "amino acid transport" evidence=TAS

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0060356 "leucine import" evidence=IMP

UNIPROTKB|Q9TU26 LAT "Blood-brain barrier large neutral amino acid transporter" [Bos taurus (taxid:9913)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 82/238 (34%), Positives = 131/238 (55%)

Query:    69 YLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPV---- 123
             YL +   +M  P + + L + IS  ++ +  V+T +      +    ++T   V V    
Sbjct:   257 YLNFVTEEMINPYRNLPLAIIISLPIVTLVYVLTNLAYFTT-LTPEQMLTSEAVAVDFGN 315

Query:   124 YLIGV-KWRDKPEAFTRSFNAL--TYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSL 180
             Y +GV  W          F ++  + F    + FVGAR GH P++LS I+    TP PSL
Sbjct:   316 YHLGVMSWIIPVFVGLSCFGSVNGSLFTSSRLFFVGAREGHLPSILSMIHPRLLTPVPSL 375

Query:   181 VFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPI 240
             VF  I++L   F+ D+F +I + SF     + +++ G+L+LRY +P++ RPIKV L +P+
Sbjct:   376 VFTCIMTLLYAFSKDIFSVINFFSFFNWLCVALAIAGMLWLRYQKPELERPIKVHLALPV 435

Query:   241 SFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRS-FSKFII 297
              F+L C+FL+     + P E G+   I LSG+PVY +GV WRDKP+   +S FS  ++
Sbjct:   436 FFILACLFLIAVSFWKTPVECGIGFTIILSGLPVYFLGVWWRDKPKWLLQSIFSTTVL 493

GO:0015196 "L-tryptophan transmembrane transporter activity" evidence=IDA

GO:0015820 "leucine transport" evidence=IDA

GO:0015192 "L-phenylalanine transmembrane transporter activity" evidence=IDA

GO:0015190 "L-leucine transmembrane transporter activity" evidence=IDA

GO:0015823 "phenylalanine transport" evidence=IDA

GO:0015827 "tryptophan transport" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA

RGD|1309275 Slc7a11 "solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11" [Rattus norvegicus (taxid:10116)]

 Score = 343 (125.8 bits), Expect = 3.7e-31, P = 3.7e-31
 Identities = 82/240 (34%), Positives = 130/240 (54%)

Query:    61 MISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLS 119
             M +  G  YL +   ++  P K + L + IS  +I V  V+T +      +    L+  S
Sbjct:   243 MYAYAGWFYLNFITEEVDNPEKTIPLAICISMAIITVGYVLTNVAYFTT-ISAEELLQSS 301

Query:   120 GVPVY----LIGVKWRDKPEAFTR-----SFNALTYFVQKLMCFVGARYGHFPAMLSHIN 170
              V V     L+G K+      F       S N   + V +L  +V +R GH P +LS I+
Sbjct:   302 AVAVTFSERLLG-KFSLAVPIFVALSCFGSMNGGVFAVSRLF-YVASREGHLPEILSMIH 359

Query:   171 ISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHR 230
             + + TP P+++ L+ L++ MLF+ D++ L+ + SF    F+ ++V G++YLRY +PDMHR
Sbjct:   360 VHKHTPLPAVIVLHPLTMIMLFSGDLYSLLNFLSFARWLFMGLAVAGLIYLRYKRPDMHR 419

Query:   231 PIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTR 290
             P KV L++P  F   C+F+VV  +   P   G+  LITL+GVP Y + + W  KP+ F R
Sbjct:   420 PFKVPLFIPALFSFTCLFMVVLSLYSDPFSTGVGFLITLTGVPAYYLFIVWDKKPKWFRR 479

GO:0003674 "molecular_function" evidence=ND

GO:0005791 "rough endoplasmic reticulum" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0007420 "brain development" evidence=IEP

GO:0009636 "response to toxic substance" evidence=IEA;ISO

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035094 "response to nicotine" evidence=IEP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0070306 "lens fiber cell differentiation" evidence=IEP

GO:0070527 "platelet aggregation" evidence=IEA;ISO

MGI|MGI:1347355 Slc7a11 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 11" [Mus musculus (taxid:10090)]

 Score = 342 (125.4 bits), Expect = 4.8e-31, P = 4.8e-31
 Identities = 82/240 (34%), Positives = 130/240 (54%)

Query:    61 MISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLS 119
             M +  G  YL +   ++  P K + L + IS  +I V  V+T +      +    L+  S
Sbjct:   243 MYAYAGWFYLNFITEEVDNPEKTIPLAICISMAIITVGYVLTNVAYFTT-ISAEELLQSS 301

Query:   120 GVPVY----LIGVKWRDKPEAFTR-----SFNALTYFVQKLMCFVGARYGHFPAMLSHIN 170
              V V     L+G K+      F       S N   + V +L  +V +R GH P +LS I+
Sbjct:   302 AVAVTFSERLLG-KFSLAVPIFVALSCFGSMNGGVFAVSRLF-YVASREGHLPEILSMIH 359

Query:   171 ISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHR 230
             + + TP P+++ L+ L++ MLF+ D++ L+ + SF    F+ ++V G++YLRY +PDMHR
Sbjct:   360 VHKHTPLPAVIVLHPLTMVMLFSGDLYSLLNFLSFARWLFMGLAVAGLIYLRYKRPDMHR 419

Query:   231 PIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTR 290
             P KV L++P  F   C+F+VV  +   P   G+  LITL+GVP Y + + W  KP+ F R
Sbjct:   420 PFKVPLFIPALFSFTCLFMVVLSLYSDPFSTGVGFLITLTGVPAYYLFIVWDKKPKWFRR 479

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0005791 "rough endoplasmic reticulum" evidence=ISO

GO:0005856 "cytoskeleton" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0009636 "response to toxic substance" evidence=ISO

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0070527 "platelet aggregation" evidence=IMP

UNIPROTKB|G3N179 SLC7A11 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 79/239 (33%), Positives = 131/239 (54%)

Query:    61 MISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPILE----APREVGM--A 113
             M +  G  YL +   ++  P K + L + IS  ++ V  V+T +      +  E+ +  A
Sbjct:   231 MYAYAGWFYLNFVTEEVENPEKTIPLAICISMAIVTVGYVLTNVAYFTTISAEELMLSNA 290

Query:   114 VLITLSG--VPVYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINI 171
             V +T S   +  + + V        F  S N   + V +L  +V +R GH P +LS I+I
Sbjct:   291 VAVTFSERLLGNFSLAVPIFVALSCFG-SMNGGVFAVSRLF-YVASREGHLPEILSMIHI 348

Query:   172 SRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRP 231
              + TP P+++ L+ L++ MLF+ D++ L+ + SF    FI ++V G++YLRY +PDMHRP
Sbjct:   349 RKHTPLPAVIVLHPLTMIMLFSGDLYSLLNFLSFARWLFIGLAVAGLIYLRYKRPDMHRP 408

Query:   232 IKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTR 290
              KV L++P  F   C+F+V   +   P   G+  +ITL+G+P Y + + W  KP+ F R
Sbjct:   409 FKVPLFIPALFSFTCLFMVALSLYSDPFSTGIGFIITLTGIPAYYLFIIWDKKPKWFRR 467

GO:0016021 "integral to membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1N5E3 SLC7A11 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 339 (124.4 bits), Expect = 1.2e-30, P = 1.2e-30
 Identities = 79/239 (33%), Positives = 131/239 (54%)

Query:    61 MISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPILE----APREVGM--A 113
             M +  G  YL +   ++  P K + L + IS  ++ V  V+T +      +  E+ +  A
Sbjct:   244 MYAYAGWFYLNFVTEEVENPEKTIPLAICISMAIVTVGYVLTNVAYFTTISAEELMLSNA 303

Query:   114 VLITLSG--VPVYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINI 171
             V +T S   +  + + V        F  S N   + V +L  +V +R GH P +LS I+I
Sbjct:   304 VAVTFSERLLGNFSLAVPIFVALSCFG-SMNGGVFAVSRLF-YVASREGHLPEILSMIHI 361

Query:   172 SRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRP 231
              + TP P+++ L+ L++ MLF+ D++ L+ + SF    FI ++V G++YLRY +PDMHRP
Sbjct:   362 RKHTPLPAVIVLHPLTMIMLFSGDLYSLLNFLSFARWLFIGLAVAGLIYLRYKRPDMHRP 421

Query:   232 IKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTR 290
              KV L++P  F   C+F+V   +   P   G+  +ITL+G+P Y + + W  KP+ F R
Sbjct:   422 FKVPLFIPALFSFTCLFMVALSLYSDPFSTGIGFIITLTGIPAYYLFIIWDKKPKWFRR 480

GO:0070527 "platelet aggregation" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

ZFIN|ZDB-GENE-030616-586 slc7a8b "solute carrier family 7 (cationic amino acid transporter, y+ system), member 8b" [Danio rerio (taxid:7955)]

 Score = 338 (124.0 bits), Expect = 2.4e-30, P = 2.4e-30
 Identities = 78/226 (34%), Positives = 124/226 (54%)

Query:    75 PDMHRPIKVSLWVP-ISFVLICVFLVVTPILEAPREV--GMAVLITLSGVPVYLIGV-KW 130
             P ++ P  + + +P ++FV +   +     + +P+E+    AV +T       L+GV  W
Sbjct:   260 PYVNLPRAIFISIPLVTFVYVFANIAYVTAM-SPQELLASNAVAVTFGEK---LLGVMSW 315

Query:   131 RDKPEAFTRSFNAL--TYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSL 188
                      +F  +  + F    + F GAR GH P++L+ I++ R TP P+L+F  I +L
Sbjct:   316 IMPISVALSTFGGVNGSLFTSSRLFFAGAREGHLPSLLAMIHVKRCTPIPALLFTCISTL 375

Query:   189 FMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVF 248
              ML TSD++ LI Y  F+   F  ++V G + LR  QPDMHRPIK+SL  P+ ++L   F
Sbjct:   376 LMLCTSDMYTLINYVGFINYLFYGVTVAGQIVLRIKQPDMHRPIKISLVWPVIYLLFWAF 435

Query:   249 LVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFSK 294
             L++  +   P   G+ + I L+GVPVY +GV W +KP+ F     K
Sbjct:   436 LLIFSLYSEPVVCGIGLAIMLTGVPVYFLGVYWDNKPQCFNTFVDK 481

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|B4DTV6 SLC7A8 "Large neutral amino acids transporter small subunit 2" [Homo sapiens (taxid:9606)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 79/231 (34%), Positives = 129/231 (55%)

Query:    76 DMHRPIKVSLWVPISFV-LICVFLVVTPILE-APREV--GMAVLITLSGVPVYLIGVK-W 130
             DM R +  ++++ I  V  + VF  V  +   +P+E+    AV +T       L+GV  W
Sbjct:    36 DMQRNLPRAIFISIPLVTFVYVFANVAYVTAMSPQELLASNAVAVTFGEK---LLGVMAW 92

Query:   131 RDKPEAFTRSFNAL--TYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSL 188
                      +F  +  + F    + F GAR GH P++L+ I++ R TP P+L+F  I +L
Sbjct:    93 IMPISVALSTFGGVNGSLFTSSRLFFAGAREGHLPSVLAMIHVKRCTPIPALLFTCISTL 152

Query:   189 FMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVF 248
              ML TSD++ LI Y  F+   F  ++V G + LR+ +PD+ RPIK++L  PI ++L   F
Sbjct:   153 LMLVTSDMYTLINYVGFINYLFYGVTVAGQIVLRWKKPDIPRPIKINLLFPIIYLLFWAF 212

Query:   249 LVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFSKFIIII 299
             L+V  +   P   G+ + I L+GVPVY +GV W+ KP+ F+  F + + ++
Sbjct:   213 LLVFSLWSEPVVCGIGLAIMLTGVPVYFLGVYWQHKPKCFS-DFIELLTLV 262

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1PEX1 SLC7A11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 330 (121.2 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 78/243 (32%), Positives = 131/243 (53%)

Query:    61 MISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPILE----APREVGM--A 113
             M +  G  YL +   ++  P K + L + IS  ++ +  V+T +      +  E+ +  A
Sbjct:   243 MYAYAGWFYLNFVTEEVENPEKTIPLAICISMAIVTIGYVLTNVAYFTTISAEELLLSNA 302

Query:   114 VLITLSG--VPVYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINI 171
             V +T S   +  + + V        F  S N   + V +L  +V +R G  P +LS I++
Sbjct:   303 VAVTFSERLLGNFSLAVPIFVALSCFG-SMNGGVFAVSRLF-YVASREGQLPEILSMIHV 360

Query:   172 SRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRP 231
              + TP P+++ L+ L++ MLF+ D++ L+ + SF    FI ++V G++YLRY +PDMHRP
Sbjct:   361 RKHTPLPAVIVLHPLTMIMLFSGDLYSLLNFLSFARWLFIGLAVAGLIYLRYKRPDMHRP 420

Query:   232 IKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRS 291
              KV L++P  F   C+F+V   +   P   G+  +ITL+GVP Y + + W  KP+ F R 
Sbjct:   421 FKVPLFIPALFSFTCLFMVALSLYSDPFSTGIGFIITLTGVPAYYLFIIWDKKPKWFRRL 480

Query:   292 FSK 294
               K
Sbjct:   481 SDK 483

GO:0070527 "platelet aggregation" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	299
TIGR00911	501	TIGR00911, 2A0308, L-type amino acid transporter	1e-37
TIGR00911	501	TIGR00911, 2A0308, L-type amino acid transporter	4e-37
TIGR00908	442	TIGR00908, 2A0305, ethanolamine permease	1e-07
TIGR00908	442	TIGR00908, 2A0305, ethanolamine permease	9e-07

>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter

 Score =  138 bits (350), Expect = 1e-37
 Identities = 63/145 (43%), Positives = 94/145 (64%)

Query: 147 FVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFV 206
           F    + FVG R GH P++LS I++ R TP PSL+ +  L+L MLF+ D++ LI   SF 
Sbjct: 338 FSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFA 397

Query: 207 ESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVL 266
              F  ++V G+L+LRY +P+M+RPIKV L+ P+ F+L C+FL++  +   P   G+  +
Sbjct: 398 NWLFNALAVAGLLWLRYKRPEMNRPIKVPLFFPVFFLLSCLFLIILSLYSPPVGCGVGFI 457

Query: 267 ITLSGVPVYLIGVKWRDKPEAFTRS 291
           I L+GVPVY  GV W++KP+ F   
Sbjct: 458 IMLTGVPVYFFGVWWQNKPKWFRYL 482

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 501

>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter

 Score =  137 bits (347), Expect = 4e-37
 Identities = 64/150 (42%), Positives = 97/150 (64%)

Query: 3   FVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMI 62
           FVG R  H P +LS I++ R TP PSL+ +  L+L MLF+ D++ LI   SF    F  +
Sbjct: 345 FVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNAL 404

Query: 63  SVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVP 122
           +V G+L+LRY +P+M+RPIKV L+ P+ F+L C+FL++  +   P   G+  +I L+GVP
Sbjct: 405 AVAGLLWLRYKRPEMNRPIKVPLFFPVFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGVP 464

Query: 123 VYLIGVKWRDKPEAFTRSFNALTYFVQKLM 152
           VY  GV W++KP+ F     + T  +QK++
Sbjct: 465 VYFFGVWWQNKPKWFRYLIVSKTVLLQKVL 494

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 501

>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 5/117 (4%)

Query: 154 FVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMI 213
           F  +R G+ P  LS +N  +  P  ++V   ++   +  T    L+I  S F      ++
Sbjct: 304 FALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVL 362

Query: 214 SVCGILYLRYTQPDMHRPIKVSLWV---PISFVLICVFLVVTPILEAPREVGMAVLI 267
           S+     LR  +PDM RP +    +    ++ VL CV LV       PR V  AV I
Sbjct: 363 SMAAHFTLRIRRPDMERPYRTPGGILTPGVALVLACVALVTG-FYVDPRVVVGAVAI 418

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily [Transport and binding proteins, Amino acids, peptides and amines]. Length = 442

>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease

 Score = 49.5 bits (118), Expect = 9e-07
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 3   FVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMI 62
           F  +R  + P  LS +N  +  P  ++V   ++   +  T    L+I  S F      ++
Sbjct: 304 FALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVL 362

Query: 63  SVCGILYLRYTQPDMHRPIKVSLWV---PISFVLICVFLVVTPILEAPREVGMAVLI 116
           S+     LR  +PDM RP +    +    ++ VL CV LV       PR V  AV I
Sbjct: 363 SMAAHFTLRIRRPDMERPYRTPGGILTPGVALVLACVALVTG-FYVDPRVVVGAVAI 418

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily [Transport and binding proteins, Amino acids, peptides and amines]. Length = 442

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	299
KOG1287|consensus	479		99.97
TIGR00911	501	2A0308 L-type amino acid transporter.	99.93
PRK11357	445	frlA putative fructoselysine transporter; Provisio	99.92
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	99.92
TIGR00906	557	2A0303 cationic amino acid transport permease.	99.9
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	99.9
PRK10655	438	potE putrescine transporter; Provisional	99.9
TIGR00909	429	2A0306 amino acid transporter.	99.9
PRK15049	499	L-asparagine permease; Provisional	99.89
PRK11387	471	S-methylmethionine transporter; Provisional	99.88
PRK10836	489	lysine transporter; Provisional	99.88
PRK10644	445	arginine:agmatin antiporter; Provisional	99.87
TIGR00907	482	2A0304 amino acid permease (GABA permease).	99.87
PRK10746	461	putative transport protein YifK; Provisional	99.87
PRK10197	446	gamma-aminobutyrate transporter; Provisional	99.87
TIGR00913	478	2A0310 amino acid permease (yeast).	99.87
PRK10249	458	phenylalanine transporter; Provisional	99.86
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	99.86
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	99.86
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	99.86
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	99.85
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	99.85
PRK10580	457	proY putative proline-specific permease; Provision	99.85
KOG1289|consensus	550		99.85
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	99.85
COG0833	541	LysP Amino acid transporters [Amino acid transport	99.85
PRK10238	456	aromatic amino acid transporter; Provisional	99.84
PRK11021	410	putative transporter; Provisional	99.79
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	99.79
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	99.78
TIGR00930	953	2a30 K-Cl cotransporter.	99.78
PRK15238	496	inner membrane transporter YjeM; Provisional	99.77
KOG1286|consensus	554		99.75
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	99.75
COG0531	466	PotE Amino acid transporters [Amino acid transport	99.74
KOG1287|consensus	479		99.71
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	99.62
PRK11357	445	frlA putative fructoselysine transporter; Provisio	99.48
TIGR00911	501	2A0308 L-type amino acid transporter.	99.46
TIGR00909	429	2A0306 amino acid transporter.	99.43
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	99.41
TIGR00906	557	2A0303 cationic amino acid transport permease.	99.25
PRK10655	438	potE putrescine transporter; Provisional	99.2
KOG2082|consensus	1075		99.11
PRK10836	489	lysine transporter; Provisional	99.1
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	99.09
PRK10197	446	gamma-aminobutyrate transporter; Provisional	99.05
PRK11387	471	S-methylmethionine transporter; Provisional	99.04
TIGR00913	478	2A0310 amino acid permease (yeast).	99.04
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	99.03
KOG1288|consensus	945		99.01
PRK10644	445	arginine:agmatin antiporter; Provisional	98.98
PRK15049	499	L-asparagine permease; Provisional	98.96
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	98.92
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	98.92
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	98.91
PRK10249	458	phenylalanine transporter; Provisional	98.88
PRK10746	461	putative transport protein YifK; Provisional	98.87
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	98.84
TIGR00907	482	2A0304 amino acid permease (GABA permease).	98.84
PRK10580	457	proY putative proline-specific permease; Provision	98.82
TIGR00930	953	2a30 K-Cl cotransporter.	98.75
PRK10238	456	aromatic amino acid transporter; Provisional	98.75
COG0531	466	PotE Amino acid transporters [Amino acid transport	98.68
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	98.67
PRK15238	496	inner membrane transporter YjeM; Provisional	98.61
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	98.57
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	98.55
PRK11021	410	putative transporter; Provisional	98.55
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	98.55
COG0833	541	LysP Amino acid transporters [Amino acid transport	98.55
KOG1286|consensus	554		98.18
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	98.08
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	97.98
KOG1289|consensus	550		97.81
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	97.11
KOG2082|consensus	1075		97.06
KOG2083|consensus	643		96.95
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	94.4
PF13906	51	AA_permease_C: C-terminus of AA_permease	91.5
KOG1288|consensus	945		91.21
PHA02764	399	hypothetical protein; Provisional	86.44

>KOG1287|consensus

Probab=99.97  E-value=5e-31  Score=236.43  Aligned_cols=233  Identities=33%  Similarity=0.589  Sum_probs=191.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHH--HHHHh--hcchHHHHHHHHH--HHhccceeeeeeeec
Q psy16475         59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFL--VVTPI--LEAPREVGMAVLI--TLSGVPVYLIGVKWR  131 (299)
Q Consensus        59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~--i~~~~--~~~~~~~~~~~~~--~~~g~~~~~~~~~~~  131 (299)
                      +-.++|.||+.+....||.|||+| .|+++..+..+.+..+  ..+++  ..++++...+.+.  .+....    ...+.
T Consensus       212 sglfa~~GWd~lN~vteEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~----~G~~~  287 (479)
T KOG1287|consen  212 SGLFAFSGWDYLNYVTEEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRI----LGVFA  287 (479)
T ss_pred             HhhhcccCchhhccchHhhcCccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHh----ccchH
Confidence            455799999999999999999999 9996665555444444  34444  2456655432211  111100    00000


Q ss_pred             ---c--cCcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q psy16475        132 ---D--KPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFV  206 (299)
Q Consensus       132 ---~--~~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~  206 (299)
                         .  .....+++.|+.+.+.||..+ ++||||++|+.|+++|++++||..|+++++.+++++.+.+++++++|+.++.
T Consensus       288 ~~ip~~ValS~~G~~n~~ifs~SR~~~-~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~  366 (479)
T KOG1287|consen  288 WAIPFSVALSLIGSLNSVIFSSSRLFY-AGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFA  366 (479)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHHH-HHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence               0  002235899999999999999 9999999999999999888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhhcccc-hHHHHHHHHHHHhhhheeeeeeeecCCc
Q psy16475        207 ESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEA-PREVGMAVLITLSGVPVYLIGVKWRDKP  285 (299)
Q Consensus       207 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (299)
                      .++.+.++..+++++|+|+|+.+||+|.|...|+++...++++...+...+ +.++.++.++.+.|.++|+.+.+++++|
T Consensus       367 ~~l~~~l~~~gll~lR~k~p~~~rPiKvpl~~p~~~~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i~~~~~p  446 (479)
T KOG1287|consen  367 YWLFRGLSMAGLLWLRWKHPPLPRPIKVPLFIPILFLLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFIHWKKKP  446 (479)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCCEeeeeehHHHHHHHHHHHhheeeeecCCccchhHHHHHHHhhhhheEEEEecCCc
Confidence            999999999999999999999999999999999999999999999999888 5679999999999999999999999999


Q ss_pred             hhhhhcccceE
Q psy16475        286 EAFTRSFSKFI  296 (299)
Q Consensus       286 ~~~~~~~~~~~  296 (299)
                      +.+++..++++
T Consensus       447 ~~~~~~~~~it  457 (479)
T KOG1287|consen  447 KWLRKISESIT  457 (479)
T ss_pred             HHHHHhhHHHH
Confidence            99999877654

>TIGR00911 2A0308 L-type amino acid transporter

Probab=99.93  E-value=4.8e-25  Score=206.79  Aligned_cols=233  Identities=33%  Similarity=0.604  Sum_probs=168.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcchHHHHHHHHHHHhcccee-eeeeeec
Q psy16475         58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEAPREVGMAVLITLSGVPVY-LIGVKWR  131 (299)
Q Consensus        58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~g~~~~-~~~~~~~  131 (299)
                      ....+++.|+|...+.+||.|||+| +||++.........+++....    ..++++.......   ...+. .......
T Consensus       242 ~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~---~~~~~~~~~g~~~  318 (501)
T TIGR00911       242 YSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAV---AVDFGERLLGVMS  318 (501)
T ss_pred             HHHHHHHHhHHHHhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHH---HHHHHHHHhhhHH
Confidence            4567899999999999999999999 999666555554444443321    1222322111000   00000 0000000


Q ss_pred             c-----cCcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q psy16475        132 D-----KPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFV  206 (299)
Q Consensus       132 ~-----~~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~  206 (299)
                      .     ......++.|+.+.+.+|+++ +++|||.+|++|+|+|+|+++|++|++++++++++....++++.+.++.++.
T Consensus       319 ~~i~~~~~is~~~~~~~~~~~~sR~l~-a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~  397 (501)
T TIGR00911       319 WAMPALVGLSCFGSVNGSLFSSSRLFF-VGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFA  397 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            0     001225788999999999999 9999999999999999999999999999999988877778888889999999


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheeeeeeeecCCch
Q psy16475        207 ESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPE  286 (299)
Q Consensus       207 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (299)
                      .++.|.++.++.+++|+|+|+.+||||.|.+.+.++++.++++++.+...++........+.++|.++|+...+++++|+
T Consensus       398 ~~i~y~l~~~a~i~lR~~~p~~~rp~r~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~  477 (501)
T TIGR00911       398 NWLFNALAVAGLLWLRYKRPEMNRPIKVPLFFPVFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGVPVYFFGVWWQNKPK  477 (501)
T ss_pred             HHHHHHHHHHHHHheeccCCCCCCCccCchHHHHHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            99999999999999999999999999999988888888888888777666655555666777788777764333444455


Q ss_pred             hhhhcccc
Q psy16475        287 AFTRSFSK  294 (299)
Q Consensus       287 ~~~~~~~~  294 (299)
                      ..+...++
T Consensus       478 ~~~~~~~~  485 (501)
T TIGR00911       478 WFRYLIVS  485 (501)
T ss_pred             hhccccce
Confidence            55443333

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=99.92  E-value=9.4e-25  Score=202.01  Aligned_cols=222  Identities=18%  Similarity=0.227  Sum_probs=160.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcchHHHHHH---HHHHHhccceeeeeee
Q psy16475         58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEAPREVGMA---VLITLSGVPVYLIGVK  129 (299)
Q Consensus        58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~---~~~~~~g~~~~~~~~~  129 (299)
                      ....+++.|+|...+.+||.|||+| +||++.........+++....    ..++++....   ........+.   ...
T Consensus       202 ~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~---~g~  278 (445)
T PRK11357        202 SATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPA---LGS  278 (445)
T ss_pred             HHHHHHHhhHHHHHhhHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHh---cch
Confidence            3457899999999999999999999 999665555444444333222    1222221110   0000000000   000


Q ss_pred             eccc------CcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHHHH
Q psy16475        130 WRDK------PEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYS  203 (299)
Q Consensus       130 ~~~~------~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~  203 (299)
                      ....      .....++.|+.+...+|+++ +|+|||.+|++|+|+|||+|+|++|+++++++++++.+.++++++.++.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~-a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~  357 (445)
T PRK11357        279 TAGIFVAITAMIVILGSLSSCVMYQPRLEY-AMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYF  357 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            0000      01124677888899999999 9999999999999999999999999999999999888778899999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCCCccchhH--HHHHHHHHHHHHHHhhcccchHHH-HHHHHHHHhhhheeeeeee
Q psy16475        204 SFVESAFIMISVCGILYLRYTQPDMHRPIKVSLW--VPISFVLICVFLVVTPILEAPREV-GMAVLITLSGVPVYLIGVK  280 (299)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  280 (299)
                      +...++.|.+...+.+++||++ +.++|||.|..  .++++++.++++++.....++... ..+..+.++|.++|++.+|
T Consensus       358 ~~~~~~~~~~~~~a~i~lr~~~-~~~~~~k~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~  436 (445)
T PRK11357        358 TLVMCFKNTLTFGSIIWCRKRD-DYKPLWRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAK  436 (445)
T ss_pred             HHHHHHHHHHHHHHHheeecCC-CCCCCcccCCchHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhhhHHhheec
Confidence            9999999999999999888775 45689999874  788888888888877655666554 3567788899998887766


Q ss_pred             ecCC
Q psy16475        281 WRDK  284 (299)
Q Consensus       281 ~~~~  284 (299)
                      |+++
T Consensus       437 ~~~~  440 (445)
T PRK11357        437 RSRQ  440 (445)
T ss_pred             hhhh
Confidence            6543

>TIGR00908 2A0305 ethanolamine permease

Probab=99.92  E-value=1.7e-24  Score=200.18  Aligned_cols=214  Identities=18%  Similarity=0.227  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh----cchHHHHHHHHHHHhccceeeeeee-ecc
Q psy16475         59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL----EAPREVGMAVLITLSGVPVYLIGVK-WRD  132 (299)
Q Consensus        59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~-~~~  132 (299)
                      ...+++.|+|...+.+||.|||+| +||++.........+++.....    .++++....      +.|....... .+.
T Consensus       199 ~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~------~~p~~~~~~~~~g~  272 (442)
T TIGR00908       199 FAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAADAKELMGS------NNPLPEALESIYGG  272 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCC------cchHHHHHHHHhCC
Confidence            346789999999999999999999 9996555444333333322221    122221100      0010000000 000


Q ss_pred             c-----------CcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHH
Q psy16475        133 K-----------PEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLIT  201 (299)
Q Consensus       133 ~-----------~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~  201 (299)
                      .           .....++.|+.+.+.+|+++ +|+|||.+|++|+|+| |+|+|++|++++++++.+..+.++.+.+.+
T Consensus       273 ~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~-a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~  350 (442)
T TIGR00908       273 STWMSQFVNLVGLFGLIASFHGIIYGYSRQIF-ALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIIL  350 (442)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            0           01123577888999999999 9999999999999999 999999999999999998877777888899


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchh--HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheeeeee
Q psy16475        202 YSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSL--WVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGV  279 (299)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (299)
                      ++++...+.|.+++.+++++|+++|+.+||||.|.  +.+++.++.++++++.....++.........++++.+.|+..+
T Consensus       351 ~~~~~~~~~y~~~~~a~i~lr~~~p~~~rp~~~p~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  430 (442)
T TIGR00908       351 VSVFGAIISYVLSMAAHFTLRIRRPDMERPYRTPGGILTPGVALVLACVALVTGFYVDPRVVVGAVAIFVVLIGYYFLYS  430 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCCCcchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999986  5788888888888777665555333334455555555555443


Q ss_pred             e
Q psy16475        280 K  280 (299)
Q Consensus       280 ~  280 (299)
                      |
T Consensus       431 ~  431 (442)
T TIGR00908       431 R  431 (442)
T ss_pred             h
Confidence            3

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=99.90  E-value=4.2e-23  Score=194.92  Aligned_cols=221  Identities=18%  Similarity=0.172  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh---cchHHHHH-----HHHHHHhccceeeeeee
Q psy16475         59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL---EAPREVGM-----AVLITLSGVPVYLIGVK  129 (299)
Q Consensus        59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~---~~~~~~~~-----~~~~~~~g~~~~~~~~~  129 (299)
                      ..+++|.|+|...+.+||.|||+| +|+++.....+...+++.....   ..|.+...     .......|.+..... .
T Consensus       239 ~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~i-i  317 (557)
T TIGR00906       239 TCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYI-V  317 (557)
T ss_pred             HHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHH-H
Confidence            456899999999999999999999 9996655555444444433321   11211110     000001110000000 0


Q ss_pred             ecccCcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy16475        130 WRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESA  209 (299)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~  209 (299)
                      .........++.++.+.+.+|++| +|+|||.+|++|+|+|||+++|++|++++++++.++.++.+++.+.++.+.+.++
T Consensus       318 ~~~~~~~~~~sl~~~~~~~sRil~-amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll  396 (557)
T TIGR00906       318 AVGALCGMSTSLLGGMFPLPRVIY-AMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLL  396 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            000001124677888999999999 9999999999999999999999999999999998888777899999999999999


Q ss_pred             HHHHHHHHHHhhhcc-----------------------------------------------------------------
Q psy16475        210 FIMISVCGILYLRYT-----------------------------------------------------------------  224 (299)
Q Consensus       210 ~~~~~~~~~~~~r~~-----------------------------------------------------------------  224 (299)
                      .|.+...+++++|++                                                                 
T Consensus       397 ~y~lv~~~~l~lR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (557)
T TIGR00906       397 AYSLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSI  476 (557)
T ss_pred             HHHHHHHHHHHhhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccccchhH
Confidence            999999999988843                                                                 


Q ss_pred             -------------------CCCC--CCCccchh--HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheeeeeeee
Q psy16475        225 -------------------QPDM--HRPIKVSL--WVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKW  281 (299)
Q Consensus       225 -------------------~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (299)
                                         +|+.  +++||.|.  +.|.+.+..++++....   +...+.-...+..+|.++|+.+.+|
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~p~~p~~~i~~~~~l~~~l---~~~~~~~~~~w~~~g~~~y~~yg~~  553 (557)
T TIGR00906       477 ALLTLFLVLFLLVVLTIWRQPQNKQKVAFKVPLVPFLPALSILINIFLMVQL---DADTWVRFAIWMAIGFLIYFLYGIR  553 (557)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHhhhhhh
Confidence                               3443  56799998  48999999999988765   3346666677888999888877666


Q ss_pred             cCC
Q psy16475        282 RDK  284 (299)
Q Consensus       282 ~~~  284 (299)
                      +.+
T Consensus       554 ~s~  556 (557)
T TIGR00906       554 HSL  556 (557)
T ss_pred             ccC
Confidence            544

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=99.90  E-value=7.5e-23  Score=181.27  Aligned_cols=253  Identities=15%  Similarity=0.173  Sum_probs=166.9

Q ss_pred             chHHHHHHHHHHHHHHHhc--------ChHHHHHH--------hh-HHHHHHHHHHHHHHHHHHhcCCCCCCCce-ehhH
Q psy16475         25 PTPSLVFLNILSLFMLFTS--------DVFLLITY--------SS-FVESAFIMISVCGILYLRYTQPDMHRPIK-VSLW   86 (299)
Q Consensus        25 P~~ail~~~vi~~i~~~~~--------~~~~l~~~--------~~-~~~~~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~   86 (299)
                      |+.+++..++++..+++.+        .++|+.+-        .+ .......+++|.|.|.+...+.|.|||+| +||+
T Consensus       160 KV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkA  239 (462)
T COG1113         160 KVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKA  239 (462)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHH
Confidence            4788888888888877642        12333321        11 22344577899999999999999999999 9995


Q ss_pred             HHHHHHHHHHHHHHHHh---h---cc---hHHHHHHHHHHHhccceeeeeeeecccCcccccccchhhhhhhhhhhcccc
Q psy16475         87 VPISFVLICVFLVVTPI---L---EA---PREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFVGA  157 (299)
Q Consensus        87 ~~~~~~~~~~~~i~~~~---~---~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~~a  157 (299)
                      +--....+..+++....   .   ++   +++..........|+|.-. .....--.....|++||.+++++|++| ++|
T Consensus       240 in~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa-~i~N~VVLtAa~S~~NSglystsRmL~-~la  317 (462)
T COG1113         240 INSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAA-GIMNFVVLTAALSALNSGLYSTSRMLY-SLA  317 (462)
T ss_pred             HhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccc-cceeEEEeechhhcccccccccchHHH-HHh
Confidence            54433333333332221   1   11   1222223333445655210 000000113346899999999999999 999


Q ss_pred             ccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC--C
Q psy16475        158 RYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT------SDVFLLITYSSFVESAFIMISVCGILYLRYTQPDM--H  229 (299)
Q Consensus       158 ~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~  229 (299)
                      +||..||.++|+| |+++|++|++++++..++-..+      ..|+.+.+.++......|.++.++++++||++|+.  +
T Consensus       318 ~~g~APk~~~kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~~~~~~~~  396 (462)
T COG1113         318 KQGDAPKAFAKLS-KRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRKAKPAEGKK  396 (462)
T ss_pred             hcCcccHhHhhcc-ccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccC
Confidence            9999999999999 8999999999999887765443      34899999999999999999999999999976654  3


Q ss_pred             CCccchh--HHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHhhhheeeeeee
Q psy16475        230 RPIKVSL--WVPISFVLICVFLVVTPILE-APREVGMAVLITLSGVPVYLIGVK  280 (299)
Q Consensus       230 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  280 (299)
                      .+||.|.  +...+.+++.+.+++....+ +.+..+.....+++....+++.++
T Consensus       397 ~~fkm~~~p~~~~l~l~fl~~vlv~m~~~~~t~~~~~~~~~~~~~l~i~~~~~~  450 (462)
T COG1113         397 LKFKMPLYPFTNYLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKR  450 (462)
T ss_pred             cccccccccHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHhh
Confidence            4688886  35566666666555555544 334444444444433333343333

>PRK10655 potE putrescine transporter; Provisional

Probab=99.90  E-value=2.1e-23  Score=192.66  Aligned_cols=217  Identities=12%  Similarity=0.141  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcchHHHHHHHHHHHhccceeeeeeeeccc
Q psy16475         59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEAPREVGMAVLITLSGVPVYLIGVKWRDK  133 (299)
Q Consensus        59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  133 (299)
                      ...+++.|+|...+.+||.|||+| +||++.........+++....    ..+.++......  ................
T Consensus       197 ~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~--p~~~~~~~~~g~~~~~  274 (438)
T PRK10655        197 MTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTA--PFGLAFAQMFNPTVGK  274 (438)
T ss_pred             HHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccc--hHHHHHHHHcChhHHH
Confidence            457899999999999999999999 999666555554444443322    112222211000  0000000000000000


Q ss_pred             C------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh-------ccHHHHH
Q psy16475        134 P------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT-------SDVFLLI  200 (299)
Q Consensus       134 ~------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-------~~~~~l~  200 (299)
                      .      ....++.++.+.+.+|+++ +++|||.+|++|+|+| |+++|++|++++++++.++.+.       .+++.+.
T Consensus       275 ~~~~~~~is~~~~~~~~~~~~sR~~~-~~a~dg~lP~~~~~v~-~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~  352 (438)
T PRK10655        275 IVMALMVMSCCGSLLGWQFTIAQVFK-SSADEGYFPKIFSRVT-KVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLV  352 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCchhHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence            0      1224678888899999999 9999999999999999 7899999999999987765542       2588899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheeeeeee
Q psy16475        201 TYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVK  280 (299)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (299)
                      ++.+....+.|.++.++++++|+|+|+.+||||.+...+.++.+++++.+...   +......+..+.++|.++|.+.+|
T Consensus       353 ~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~y~~~~~  429 (438)
T PRK10655        353 NLAVVTNIIPYILSMAALVIIQKVANVPPSKAKVANFIAFVGALYSFYALYSS---GEEAMLYGSIVTFLGWTLYGLISP  429 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988888899988777777777777554422   223456677888899988876655


Q ss_pred             ec
Q psy16475        281 WR  282 (299)
Q Consensus       281 ~~  282 (299)
                      |+
T Consensus       430 ~~  431 (438)
T PRK10655        430 RF  431 (438)
T ss_pred             hh
Confidence            54

>TIGR00909 2A0306 amino acid transporter

Probab=99.90  E-value=4.6e-23  Score=189.98  Aligned_cols=210  Identities=17%  Similarity=0.297  Sum_probs=152.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh---hc-chHHHHHHHHHHHhccceeeeeeee-c
Q psy16475         58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI---LE-APREVGMAVLITLSGVPVYLIGVKW-R  131 (299)
Q Consensus        58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~---~~-~~~~~~~~~~~~~~g~~~~~~~~~~-~  131 (299)
                      ....+++.|+|...+.+||.|||+| +||++.........+++....   .. +.++....      ..|......+. +
T Consensus       202 ~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  275 (429)
T TIGR00909       202 ALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGS------TAPLSLVGYDLGQ  275 (429)
T ss_pred             HHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCC------CcHHHHHHHHhCc
Confidence            3567889999999999999999998 999665555444444433322   11 22221100      00100000000 0


Q ss_pred             ccC---------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHHH
Q psy16475        132 DKP---------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITY  202 (299)
Q Consensus       132 ~~~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~  202 (299)
                      ...         ....++.++.+...+|+++ +++|||.+|++|+|+|||+++|++|++++++++.++....+++.+.++
T Consensus       276 ~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~-~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~  354 (429)
T TIGR00909       276 GIGGLILTAGAVFSIASVMLAGIYGTSRVLF-AMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAEL  354 (429)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            000         1224788889999999999 999999999999999999999999999999999988777789999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCCCccchhH--HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheeee
Q psy16475        203 SSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLW--VPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLI  277 (299)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (299)
                      .+....+.|.+.+++.+++|+|+||.+||||.+..  .+.+.+..+.++...   ..+.+....+++.++|.++|.+
T Consensus       355 ~~~~~~~~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~y~~  428 (429)
T TIGR00909       355 TSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCPLVPVLPVLVVSYCIYLLLN---LGPGTTVWFLVWMLLGSVFYFI  428 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcchHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999998874  444444444444432   3456777788888899887753

>PRK15049 L-asparagine permease; Provisional

Probab=99.89  E-value=1.4e-22  Score=189.48  Aligned_cols=212  Identities=14%  Similarity=0.109  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh---cchHHHHHHHHHHHhccceeeeeeeeccc-
Q psy16475         59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL---EAPREVGMAVLITLSGVPVYLIGVKWRDK-  133 (299)
Q Consensus        59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-  133 (299)
                      ...+++.|+|...+.+||.|||+| +||++.........+++...+.   ..|.+...     ..+.|+.......+.. 
T Consensus       228 ~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~-----~~~sP~~~~~~~~g~~~  302 (499)
T PRK15049        228 GVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQ-----AGQSPFVTFFSKLGVPY  302 (499)
T ss_pred             HHHHHHhhHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccC-----cCCCHHHHHHHHcCchh
Confidence            467899999999999999999999 9996654443333333222211   11111100     0011111100010100 


Q ss_pred             ---------CcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh------ccHHH
Q psy16475        134 ---------PEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT------SDVFL  198 (299)
Q Consensus       134 ---------~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~  198 (299)
                               .....++.|+.+++.+|++| +|||||.+|++|+|+| |+++|.+|++++++++++..+.      ..++.
T Consensus       303 ~~~ii~~~ilia~~ss~ns~~~~~sR~l~-a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~  380 (499)
T PRK15049        303 IGSIMNIVVLTAALSSLNSGLYCTGRILR-SMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEI  380 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence                     01224788999999999999 9999999999999999 8899999999998886653221      24888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCC---CCCCccchhH--HHHHHHHHHHHHHHhhcccch---HHHHHHHHHHHh
Q psy16475        199 LITYSSFVESAFIMISVCGILYLRYTQPD---MHRPIKVSLW--VPISFVLICVFLVVTPILEAP---REVGMAVLITLS  270 (299)
Q Consensus       199 l~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  270 (299)
                      +.+++++..++.|.+++++++++||+.++   .++|||.|.+  .+++.+++++++++...+++|   .......++.++
T Consensus       381 l~~~~~~~~li~y~~~~~~~l~~R~~~~~~~~~~~pf~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (499)
T PRK15049        381 VLNFASLGIIASWAFIIVCQMRLRKAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYPNGTYTIAALPIIGIL  460 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccCccHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence            99999999999999999999999987443   3568999873  666666666666655555433   333344444444


Q ss_pred             hhheeee
Q psy16475        271 GVPVYLI  277 (299)
Q Consensus       271 ~~~~~~~  277 (299)
                      ..+.|+.
T Consensus       461 ~~~~~~~  467 (499)
T PRK15049        461 LVIGWFG  467 (499)
T ss_pred             HHHHHHH
Confidence            4444544

>PRK11387 S-methylmethionine transporter; Provisional

Probab=99.88  E-value=2.5e-22  Score=187.03  Aligned_cols=216  Identities=15%  Similarity=0.210  Sum_probs=146.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcchHHHHHHHHHHHhccceeeeeeeecc
Q psy16475         58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEAPREVGMAVLITLSGVPVYLIGVKWRD  132 (299)
Q Consensus        58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  132 (299)
                      ....++|.|+|...+.+||.|||+| +||++.........+++...+    ..+.++...      ...|.....++.+.
T Consensus       213 ~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~------~~~p~~~~~~~~g~  286 (471)
T PRK11387        213 VAVNFAFSGTELIGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGV------EKSPFVLVFEKVGI  286 (471)
T ss_pred             HHHHHHHcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCc------cCChHHHHHHHcCC
Confidence            3467899999999999999999999 999655444433333332222    111111100      00111000011111


Q ss_pred             c-C---------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh------ccH
Q psy16475        133 K-P---------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT------SDV  196 (299)
Q Consensus       133 ~-~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~  196 (299)
                      . .         ....++.|+.+++.+|+++ +|||||.+|++|+|+| |+++|++|++++.+++++..+.      ..+
T Consensus       287 ~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~-a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~  364 (471)
T PRK11387        287 PYAADIFNFVILTAILSAANSGLYASGRMLW-SLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVF  364 (471)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            0 0         1224688889999999999 9999999999999999 7899999999887766544332      125


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCC-----CCCCccchh--HHHHHHHHHHHHHHHhhcccch--HHHHHHHHH
Q psy16475        197 FLLITYSSFVESAFIMISVCGILYLRYTQPD-----MHRPIKVSL--WVPISFVLICVFLVVTPILEAP--REVGMAVLI  267 (299)
Q Consensus       197 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  267 (299)
                      +.+.+++++...+.|...+++++++||++|+     .++|||.|.  +.++++++.+++++.....+.+  .....+..+
T Consensus       365 ~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (471)
T PRK11387        365 VALSAISGFAVVAVWLSICASHFMFRRRHLRDGKALSELAYRAPWYPLTPILGFVLCLLACVGLAFDPSQRIALWCGIPF  444 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            6688889999999999999999999988753     246899887  4788888777776665433322  234567777


Q ss_pred             HHhhhheeeeeeee
Q psy16475        268 TLSGVPVYLIGVKW  281 (299)
Q Consensus       268 ~~~~~~~~~~~~~~  281 (299)
                      ++++.+.|++++|+
T Consensus       445 ~~~~~~~~~~~~~~  458 (471)
T PRK11387        445 VALCYGAYYLTQRL  458 (471)
T ss_pred             HHHHHHHHHHhccc
Confidence            77888888776554

>PRK10836 lysine transporter; Provisional

Probab=99.88  E-value=5e-22  Score=185.76  Aligned_cols=195  Identities=16%  Similarity=0.157  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcc--hHHHHHHHHHHHhccceeeeeeeecc
Q psy16475         60 IMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEA--PREVGMAVLITLSGVPVYLIGVKWRD  132 (299)
Q Consensus        60 ~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~  132 (299)
                      ..++|.|+|...+.+||.|||+| +||++.........+++....    ..+  +.+..........+.|+.......+.
T Consensus       214 ~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~  293 (489)
T PRK10836        214 VGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGL  293 (489)
T ss_pred             HHHHHccHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCC
Confidence            45899999999999999999999 999665444444444333221    111  11111000000011121111111110


Q ss_pred             cC----------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhc------cH
Q psy16475        133 KP----------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTS------DV  196 (299)
Q Consensus       133 ~~----------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~------~~  196 (299)
                      ..          ....++.|+.+++.+|++| +|||||.+|++|+|+| |+++|++|++++++++.+..+..      .+
T Consensus       294 ~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~-a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~  371 (489)
T PRK10836        294 LSAAAVMNAVILTAVLSAGNSGMYASTRMLY-TLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVY  371 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence            00          1235788999999999999 9999999999999999 78999999999999988765542      25


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcc----CCCCC-CCccchh--HHHHHHHHHHHHHHHhhccc
Q psy16475        197 FLLITYSSFVESAFIMISVCGILYLRYT----QPDMH-RPIKVSL--WVPISFVLICVFLVVTPILE  256 (299)
Q Consensus       197 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~----~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~  256 (299)
                      +.+.++++....+.|...+++++++||+    +|+.+ +|||.|.  +.|+++++.+++++.....+
T Consensus       372 ~~l~~~~~~~~~~~y~~~~~a~l~~R~~~~~~~~~~~~~p~~~p~~p~~~~~~~~~~~~~~~~~~~~  438 (489)
T PRK10836        372 LWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDLNDLPYRSGFFPLGPIFAFVLCLIITLGQNYE  438 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999986    45654 7999988  47888888888877754443

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=99.87  E-value=9e-22  Score=182.12  Aligned_cols=218  Identities=16%  Similarity=0.221  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcchHHHHHHHHHHHhccceeeeeee-ecc
Q psy16475         59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEAPREVGMAVLITLSGVPVYLIGVK-WRD  132 (299)
Q Consensus        59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~  132 (299)
                      ...+++.|+|...+.+||.|||+| +||++..........++....    ..++++...      .+.|....... .+.
T Consensus       199 ~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~------~~~p~~~~~~~~~g~  272 (445)
T PRK10644        199 VTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRV------SASPFGDAARMALGD  272 (445)
T ss_pred             HHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhc------CCChHHHHHHHHhhh
Confidence            467899999999999999999999 999655544443333332222    122222110      01111000000 011


Q ss_pred             cC---------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh-------ccH
Q psy16475        133 KP---------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT-------SDV  196 (299)
Q Consensus       133 ~~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-------~~~  196 (299)
                      ..         ....++.++.+...+|..+ +|+|||.+|++|+|+| |+++|++|++++++++.++.+.       ..+
T Consensus       273 ~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~-a~ardg~lP~~~~~v~-~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~  350 (445)
T PRK10644        273 TAGAIVSFCAAAGCLGSLGGWTLLAGQTAK-AAADDGLFPPIFARVN-KAGTPVAGLLIVGVLMTIFQLSSISPNASKEF  350 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence            11         1113466677888999999 9999999999999999 5799999999999998876543       148


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheee
Q psy16475        197 FLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYL  276 (299)
Q Consensus       197 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (299)
                      +.+.++++...++.|.++..+.+++|||+++.++|+  ....+.++++.++++.+..   ++.....+.++++++.++|+
T Consensus       351 ~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~y~  425 (445)
T PRK10644        351 GLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPA--YLAVTLIAFVYCIWAVVGS---GAKEVMWSFVTLMVITAFYA  425 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccc--hhHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999998887545553  2346778787887777543   33345555566777777776


Q ss_pred             eeeee-cCCchhhh
Q psy16475        277 IGVKW-RDKPEAFT  289 (299)
Q Consensus       277 ~~~~~-~~~~~~~~  289 (299)
                      +.++| +++|-..|
T Consensus       426 ~~~~~~~~~~~~~~  439 (445)
T PRK10644        426 LNYNRLHKNPYPLD  439 (445)
T ss_pred             HHHHhhcCCCCccC
Confidence            65554 44554333

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=99.87  E-value=1e-21  Score=183.55  Aligned_cols=220  Identities=11%  Similarity=0.004  Sum_probs=140.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHH----HHHHHHHhhc-chHHHHHHHHHHHhccceeeeeee-ec
Q psy16475         59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLIC----VFLVVTPILE-APREVGMAVLITLSGVPVYLIGVK-WR  131 (299)
Q Consensus        59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~----~~~i~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~-~~  131 (299)
                      ...+++.|+|...+.+||.|||+| +||++.....+..    .+.+...... ++++....    ..+.|+...... .+
T Consensus       225 ~~~fsf~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~p~~~~~~~~~g  300 (482)
T TIGR00907       225 NPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISS----TTGQPIAQIFYNALG  300 (482)
T ss_pred             hhHHHhcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcC----CCCChHHHHHHHHhC
Confidence            345799999999999999999999 9996554332221    1222222222 22221110    011111000000 01


Q ss_pred             c-cC---------cccccccchhhhhhhhhhhccccccCccc--hhhhhcCCCCCCchhHHHHHHHHHHHHHHh-----c
Q psy16475        132 D-KP---------EAFTRSFNALTYFVQKLMCFVGARYGHFP--AMLSHINISRFTPTPSLVFLNILSLFMLFT-----S  194 (299)
Q Consensus       132 ~-~~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~  194 (299)
                      . ..         ....++.++.+.+.+|+++ +|+|||.+|  ++|+|+|||+++|++|++++++++.++.+.     .
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~-a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~  379 (482)
T TIGR00907       301 NKAGAIFLLCLILVTSFFCAITCMTANSRMIY-AFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSST  379 (482)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHH
Confidence            1 00         1123678889999999999 999999999  999999988899999999999998776544     3


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchhH---HHHHHHHHHHHHHHh---hcc------cchHHHH
Q psy16475        195 DVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLW---VPISFVLICVFLVVT---PIL------EAPREVG  262 (299)
Q Consensus       195 ~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~------~~~~~~~  262 (299)
                      +++.+.+++++...+.|.+...+++++||+ ++.++|||.+.+   ...+.++.+.+..+.   |..      ++++...
T Consensus       380 ~f~~l~~~~~~~~~i~y~~~~~~~l~~~~~-~~~~~~f~lg~~~~~~~~~~~~~~~~~~v~~~~P~~~p~~~~~~ny~~~  458 (482)
T TIGR00907       380 AFQAIFSVCTVALDVSYVIPIICKLAKGRN-TIAPGPFWLGKYGFFVNAVAVAWTVFSSVLFSFPPVLPVTPENMNYAVV  458 (482)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCcCCcchHHHHHHHHHHHHHHHhheeCCCCCCCCcccCChHhH
Confidence            588999999999999999999888765554 556789998543   233333333333222   211      1124555


Q ss_pred             HHHHHHHhhhheeeeeeeecCC
Q psy16475        263 MAVLITLSGVPVYLIGVKWRDK  284 (299)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~  284 (299)
                      +..+..+++.++|....||+.+
T Consensus       459 ~~~~~~~~~~~~~~~~~r~~~~  480 (482)
T TIGR00907       459 VFAGVLAISLVYWKYKGRKEFT  480 (482)
T ss_pred             HHHHHHHHHHHHheEeceeecc
Confidence            5566677777777666555544

>PRK10746 putative transport protein YifK; Provisional

Probab=99.87  E-value=6e-22  Score=183.70  Aligned_cols=219  Identities=12%  Similarity=0.127  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh----cchHHHH-----HHHHHHHhccceeeee
Q psy16475         58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL----EAPREVG-----MAVLITLSGVPVYLIG  127 (299)
Q Consensus        58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~----~~~~~~~-----~~~~~~~~g~~~~~~~  127 (299)
                      ....+++.|+|...+.+||.|||+| +|+++.........+++...+.    .++++..     ........|.+.....
T Consensus       207 ~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i  286 (461)
T PRK10746        207 CIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGI  286 (461)
T ss_pred             HHHHHHhcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHH
Confidence            3456789999999999999999999 9996654433333333322221    1111110     0000011111100000


Q ss_pred             eeecccCcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHH---H-h----ccHHHH
Q psy16475        128 VKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFML---F-T----SDVFLL  199 (299)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~---~-~----~~~~~l  199 (299)
                       ..........++.|+.+++.||+++ +|||||.+|++|+|+| |+++|++|++++.+..++..   . .    ..++.+
T Consensus       287 -~~~~il~a~~s~~n~~~~~~sR~l~-~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l  363 (461)
T PRK10746        287 -INFVVLTAALSGCNSGMYSCGRMLY-ALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYV  363 (461)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence             0000001235788999999999999 9999999999999999 88999999998865543311   1 1    137789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCC--CCCccchh--HHHHHHHHHHHHHHHhhcccch--HHHHHHHHHHHhhhh
Q psy16475        200 ITYSSFVESAFIMISVCGILYLRYTQPDM--HRPIKVSL--WVPISFVLICVFLVVTPILEAP--REVGMAVLITLSGVP  273 (299)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  273 (299)
                      .++++....+.|...+++++++||++|+.  ++|||.|.  +.+.+.+++++.+++.....+.  .....+..++.++.+
T Consensus       364 ~~~~~~~~~i~w~~i~~~~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (461)
T PRK10746        364 YSASVLPGMVPWFVILISQLRFRRAHKAAIASHPFRSILFPWANYLTMAFLICVLIGMYFNEDTRMSLFVGIIFLLAVTL  443 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcCCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998753  56899776  3555555555555444433221  344555566666666


Q ss_pred             eeeeee
Q psy16475        274 VYLIGV  279 (299)
Q Consensus       274 ~~~~~~  279 (299)
                      .|..++
T Consensus       444 ~y~~~~  449 (461)
T PRK10746        444 IYKVFG  449 (461)
T ss_pred             HHHHHH
Confidence            666543

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=99.87  E-value=7.9e-22  Score=182.33  Aligned_cols=220  Identities=15%  Similarity=0.186  Sum_probs=148.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh---cch-HH--H----HHHHHHHHhccceeee
Q psy16475         58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL---EAP-RE--V----GMAVLITLSGVPVYLI  126 (299)
Q Consensus        58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~---~~~-~~--~----~~~~~~~~~g~~~~~~  126 (299)
                      ....++|.|+|...+.+||.|||+| +||++.........+++.....   ..| ++  .    .........+.+....
T Consensus       188 ~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~  267 (446)
T PRK10197        188 LITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKL  267 (446)
T ss_pred             HHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHH
Confidence            3567899999999999999999999 9996544333333333322211   111 10  0    0001111111110000


Q ss_pred             eeeecccCcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh------ccHHHHH
Q psy16475        127 GVKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT------SDVFLLI  200 (299)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~  200 (299)
                      . ..........++.|+.+++.+|++| ++||||.+|++|+|+| |+++|++|+++++.++++..+.      ..++.+.
T Consensus       268 i-i~~~i~~~~~~~~n~~~~~~sR~l~-a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~  344 (446)
T PRK10197        268 I-MDCVILLSVTSCLNSALYTASRMLY-SLSRRGDAPAVMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLI  344 (446)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            0 0000001234789999999999999 9999999999999999 8899999999998887765443      2488899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcc--CCCCCCCccchh--HHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHhhhhee
Q psy16475        201 TYSSFVESAFIMISVCGILYLRYT--QPDMHRPIKVSL--WVPISFVLICVFLVVTPILE-APREVGMAVLITLSGVPVY  275 (299)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  275 (299)
                      ++.+....+.|.++..+++++||+  +++.+.|+|.|.  +.+.+.++.+.++......+ +++....+.++.+++...|
T Consensus       345 ~~~~~~~li~y~~~~~a~i~lr~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (446)
T PRK10197        345 DSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPAQQLEVISTGLLAIGIICT  424 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCcchHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999986  333456888876  36666666666555544433 4456667788888888888


Q ss_pred             e-eeee
Q psy16475        276 L-IGVK  280 (299)
Q Consensus       276 ~-~~~~  280 (299)
                      + ..+|
T Consensus       425 ~~~~~~  430 (446)
T PRK10197        425 VPIMAR  430 (446)
T ss_pred             hHHHhh
Confidence            7 4433

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=99.87  E-value=7.3e-22  Score=184.38  Aligned_cols=193  Identities=14%  Similarity=0.137  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh----cc--hHHHHHHHH-HHHhccceeeeeee
Q psy16475         58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL----EA--PREVGMAVL-ITLSGVPVYLIGVK  129 (299)
Q Consensus        58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~----~~--~~~~~~~~~-~~~~g~~~~~~~~~  129 (299)
                      ....+++.|+|...+.+||.|||+| +||++.........+++...+.    .+  +.+...+.. ....+.|+....+.
T Consensus       204 ~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~  283 (478)
T TIGR00913       204 VTAAFSFGGTELVALTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQN  283 (478)
T ss_pred             HHHHhhhccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHH
Confidence            3456899999999999999999999 9996655554444433332221    11  111111000 00011222111111


Q ss_pred             ecccC----------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh------
Q psy16475        130 WRDKP----------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT------  193 (299)
Q Consensus       130 ~~~~~----------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------  193 (299)
                      .+...          ....++.|+.+++.+|+++ +++|||.+|++|+|+| |+++|++|++++++++++..+.      
T Consensus       284 ~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~-a~ardg~lP~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~  361 (478)
T TIGR00913       284 HGIKVLPHIFNAVILISVLSAANSSLYASSRTLY-ALAHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEA  361 (478)
T ss_pred             cCCchHhHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHhCCcccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChH
Confidence            11111          1224788999999999999 9999999999999999 7899999999999988754432      


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCCCCCCccchh--HHHHHHHHHHHHHHHh
Q psy16475        194 SDVFLLITYSSFVESAFIMISVCGILYLRYT-----QPDMHRPIKVSL--WVPISFVLICVFLVVT  252 (299)
Q Consensus       194 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  252 (299)
                      ..++.+.++++....+.|.+.+++.+++||+     +++.++|||.|.  +.+++.++.++++...
T Consensus       362 ~~~~~l~~~~~~~~~i~y~~~~~~~i~~r~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  427 (478)
T TIGR00913       362 EVFTWLLNISGLSGFFTWMCICLSHIRFRKAMKAQGRSLDELPYKSQTGPYGSYYALFFNILILIA  427 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCccCCCcchHHHHHHHHHHHHHHH
Confidence            1378899999999999999999999999875     234468999876  3555555555554443

>PRK10249 phenylalanine transporter; Provisional

Probab=99.86  E-value=2.8e-21  Score=179.24  Aligned_cols=214  Identities=15%  Similarity=0.115  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcchHHHHHHHHHHHhccceeeeeeee
Q psy16475         56 ESAFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEAPREVGMAVLITLSGVPVYLIGVKW  130 (299)
Q Consensus        56 ~~~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~  130 (299)
                      ......+++.|+|...+.+||.|||+| +||++..........++....    ..++.+...      .+.|+.......
T Consensus       214 ~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~------~~~p~~~~~~~~  287 (458)
T PRK10249        214 SLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKS------NSSPFVMIFHNL  287 (458)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCc------cCCcHHHHHHHc
Confidence            344567899999999999999999999 999655544433333322211    111111100      011110000000


Q ss_pred             cc-cC---------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh------c
Q psy16475        131 RD-KP---------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT------S  194 (299)
Q Consensus       131 ~~-~~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~  194 (299)
                      .. ..         ....++.|+.+++.+|++| +++|||.+|++|+|+| |+++|++|++++++++.+..+.      .
T Consensus       288 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~-a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~~~  365 (458)
T PRK10249        288 DSNVVASALNFVILVASLSVYNSGVYSNSRMLF-GLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLPQK  365 (458)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhChHH
Confidence            00 00         1224688888999999999 9999999999999999 7899999999999998765443      2


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CCCCCCCccchhH--HHHHHHHHHHHHHHhhccc--chHHHHHHHHHH
Q psy16475        195 DVFLLITYSSFVESAFIMISVCGILYLRYT--QPDMHRPIKVSLW--VPISFVLICVFLVVTPILE--APREVGMAVLIT  268 (299)
Q Consensus       195 ~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  268 (299)
                      .++.+.+.++....+.|.+.+.+++++||+  +++.++|||.|.+  .+++.++.+.+.++.....  +.+.......+.
T Consensus       366 ~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~p~~~~~~p~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~  445 (458)
T PRK10249        366 AFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQGRETQFKALLYPFGNYLCIAFLGMILLLMCTMDDMRLSAILLPVWI  445 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCCccHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence            478899999999999999999999999863  4555689998763  4555555554444433322  223444444444


Q ss_pred             Hhhhheeee
Q psy16475        269 LSGVPVYLI  277 (299)
Q Consensus       269 ~~~~~~~~~  277 (299)
                      ++..+.|..
T Consensus       446 ~~~~~~~~~  454 (458)
T PRK10249        446 VFLFVAFKT  454 (458)
T ss_pred             HHHHHHHHh
Confidence            444444544

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=99.86  E-value=3.3e-21  Score=180.48  Aligned_cols=193  Identities=12%  Similarity=0.153  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHH--HH--hhcchHHHHHHHH-HHHhccceeeeeee--e
Q psy16475         59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVV--TP--ILEAPREVGMAVL-ITLSGVPVYLIGVK--W  130 (299)
Q Consensus        59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~--~~--~~~~~~~~~~~~~-~~~~g~~~~~~~~~--~  130 (299)
                      ...+++.|+|...+.+||.|||+| +||++....++....+..  ..  ...++++...... ..............  +
T Consensus       202 ~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (507)
T TIGR00910       202 AFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEW  281 (507)
T ss_pred             HHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhH
Confidence            456789999999999999999999 999665544433332222  11  1122222111100 00000000000000  0


Q ss_pred             cc-cC-----cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh---------cc
Q psy16475        131 RD-KP-----EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT---------SD  195 (299)
Q Consensus       131 ~~-~~-----~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~---------~~  195 (299)
                      .. ..     ....++.++.+.+.+|.++ +++|||.+|++|+|+| |+++|++|++++++++.++.+.         ..
T Consensus       282 ~~~ii~~~~~~~~l~~~~~~i~~~sR~l~-~~ardg~lP~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~  359 (507)
T TIGR00910       282 LVKVIAALIAFGVLAEIASWIVGPSRGMF-AAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLS  359 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence            00 00     1123567888999999999 9999999999999999 8899999999999998764322         12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchh------HHHHHHHHHHHHHHHhh
Q psy16475        196 VFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSL------WVPISFVLICVFLVVTP  253 (299)
Q Consensus       196 ~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  253 (299)
                      +..+.+.++....+.|++..++.+++|+|+|+.+||||.|.      ....+.++.+++..+..
T Consensus       360 f~~l~~~~~~~~~i~Y~l~~~a~i~lr~k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v~~  423 (507)
T TIGR00910       360 FLIAIALTVVIYLCAYFLFFIGYFVLILKHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFFIS  423 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEecCCccchhhHHHHHHHHHHHHHhee
Confidence            55677888999999999999999999999999999999864      24455555555554443

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=99.86  E-value=1.9e-21  Score=180.41  Aligned_cols=221  Identities=16%  Similarity=0.210  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh--h-c---chHHHHH----HHHHHHhccceee
Q psy16475         57 SAFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI--L-E---APREVGM----AVLITLSGVPVYL  125 (299)
Q Consensus        57 ~~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~--~-~---~~~~~~~----~~~~~~~g~~~~~  125 (299)
                      .....+++.|+|...+.+||.|||+| +||++.........+++....  . .   ++.+...    .......|.+.-.
T Consensus       207 ~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~  286 (452)
T TIGR01773       207 ILVTMFSFMGTEIVTIAAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAK  286 (452)
T ss_pred             HHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHH
Confidence            34567899999999999999999999 999654333222222222211  1 1   1111100    0000011100000


Q ss_pred             eeeeecccCcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh------ccHHHH
Q psy16475        126 IGVKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT------SDVFLL  199 (299)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l  199 (299)
                      .. ..........++.|+.+++.+|.++ +|||||.+|++|+|+| |+++|++|++++++++++..+.      ..++.+
T Consensus       287 ~i-i~~~~~~~~~~~~~~~~~~~sR~~~-a~ardg~lP~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l  363 (452)
T TIGR01773       287 LI-MDFVVLTAVLSCLNSALYTTSRMLY-SLAERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFL  363 (452)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            00 0000001234788999999999999 9999999999999999 7899999999999998876543      126778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcc--chh--HHHHHHHHHHHHHHHhhc-ccc-hHHHHHHHHHHHhhhh
Q psy16475        200 ITYSSFVESAFIMISVCGILYLRYTQPDMHRPIK--VSL--WVPISFVLICVFLVVTPI-LEA-PREVGMAVLITLSGVP  273 (299)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~  273 (299)
                      .+..+...++.|.+..++++++|+++|+.++||+  .+.  +.++..+..+.+.+.... ..+ ....+....+.+++..
T Consensus       364 ~~~~~~~~~~~y~~~~~~~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  443 (452)
T TIGR01773       364 VNSSGAIALLVYLVIAVSQLRMRKKLKANGEAIKIRMWLYPWLTWLVIIFICGILVSMLFIPSMRDEVLLTGLLTIIVLC  443 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHH
Confidence            8888988999999999999999998776666544  442  344444444444444432 222 2445555555666666


Q ss_pred             eeeeeee
Q psy16475        274 VYLIGVK  280 (299)
Q Consensus       274 ~~~~~~~  280 (299)
                      +|++.+|
T Consensus       444 ~y~~~~~  450 (452)
T TIGR01773       444 SYLVFAR  450 (452)
T ss_pred             HHHHhhc
Confidence            6665433

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=99.86  E-value=3e-21  Score=179.93  Aligned_cols=175  Identities=15%  Similarity=0.213  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHH----hhcchHHHHHHHHH-HHhccceeeeeeeeccc
Q psy16475         60 IMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTP----ILEAPREVGMAVLI-TLSGVPVYLIGVKWRDK  133 (299)
Q Consensus        60 ~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~----~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~  133 (299)
                      ..++|.|+|.....+||.|||+| +||++..........++...    ...++++...+... .................
T Consensus       203 ~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  282 (474)
T TIGR03813       203 IFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGP  282 (474)
T ss_pred             HHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHH
Confidence            45789999999999999999999 99966554444333333222    12222221110000 00000000000000000


Q ss_pred             -C-----cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh--------ccHHHH
Q psy16475        134 -P-----EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT--------SDVFLL  199 (299)
Q Consensus       134 -~-----~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~--------~~~~~l  199 (299)
                       .     ....++.++.+.+.+|.++ +++|||.+|++|+|+| |+++|++|++++++++.++.+.        ..++.+
T Consensus       283 i~~~~~~~~~l~~~~~~~~~~sR~~~-a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l  360 (474)
T TIGR03813       283 ILAFALAIGVLAGVVTWVAGPSSGML-AVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQIL  360 (474)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence             0     0123566777788999999 9999999999999999 8999999999999876543321        236788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchh
Q psy16475        200 ITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSL  236 (299)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  236 (299)
                      .+.++....+.|.+..++++++|+|+|+.+||||.|.
T Consensus       361 ~~~~~~~~~i~y~~~~~a~i~lr~~~~~~~rpf~~p~  397 (474)
T TIGR03813       361 SQLTVILYLVMYLLMFASAIYLRYSQPDRPRPYRIPG  397 (474)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEecC
Confidence            8999999999999999999999998888899999864

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=99.85  E-value=5.1e-21  Score=178.31  Aligned_cols=219  Identities=15%  Similarity=0.146  Sum_probs=149.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcchHHHHHHHHHHHhccc-eeeeeee-ec
Q psy16475         59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEAPREVGMAVLITLSGVP-VYLIGVK-WR  131 (299)
Q Consensus        59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~g~~-~~~~~~~-~~  131 (299)
                      ...+++.|+|...+.+||.|| +| +||++.....+...+++....    ..++++...      ...| ....... .+
T Consensus       207 ~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~------~~~p~~~~~~~~~~g  279 (473)
T TIGR00905       207 VTLWVFIGIEGAVVSSGRAKN-KSDVGKATVLGTLGALVIYILITLLSLGVLPQQELAN------LPNPSMAAVLEMIVG  279 (473)
T ss_pred             HHHHHHHhHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhh------CCCchHHHHHHHHhC
Confidence            467899999999999999999 88 999665555444444433222    122222211      0111 0000000 01


Q ss_pred             ccC---------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh-----ccHH
Q psy16475        132 DKP---------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT-----SDVF  197 (299)
Q Consensus       132 ~~~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~~  197 (299)
                      ...         ....++.|+.+.+.+|.+| +|+|||.+|++|+|+|+ +++|++|++++++++.+..+.     ++++
T Consensus       280 ~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~-amardg~lP~~~~~v~~-~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~  357 (473)
T TIGR00905       280 KWGAVLISLGLIISVLGSLLSWTMLAAEVPF-SAAKDGLFPKIFGRVNK-NGAPSVALLLTNILIQLFLLLTLLTSSAYN  357 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCChhHHHHhhCc-cCCCHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            100         1224788999999999999 99999999999999995 599999999999988755432     4689


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheeee
Q psy16475        198 LLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLI  277 (299)
Q Consensus       198 ~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (299)
                      .+.++.++..++.|.+++.+.+++|+|++..+++.+.+...++++.+.++++.+..   ++.....++++.++|.++|++
T Consensus       358 ~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~y~~  434 (473)
T TIGR00905       358 VLVSLAVVMILVPYLLSAAYLLKLAKVGTYPKIKNRKALIVGVIACVYSIWLLYAA---GLKYLLLGFILYAPGIIFYGR  434 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998762111122223456777777776665543   445666788888899888887


Q ss_pred             eeeecCCchhhhh
Q psy16475        278 GVKWRDKPEAFTR  290 (299)
Q Consensus       278 ~~~~~~~~~~~~~  290 (299)
                      .+|+++++ .+++
T Consensus       435 ~~~~~~~~-~~~~  446 (473)
T TIGR00905       435 ARKERGKH-VFNK  446 (473)
T ss_pred             HHHhcCCC-CCCH
Confidence            76655544 3443

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=99.85  E-value=1.6e-21  Score=181.40  Aligned_cols=226  Identities=14%  Similarity=0.127  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCceehhHHHHHHHHHHHHHHHHHhh----cchHHHHH--HH-HHHHhccceeeeeeeec
Q psy16475         59 FIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPIL----EAPREVGM--AV-LITLSGVPVYLIGVKWR  131 (299)
Q Consensus        59 ~~~~~~~g~~~~~~~~~E~~~p~kiP~~~~~~~~~~~~~~i~~~~~----~~~~~~~~--~~-~~~~~g~~~~~~~~~~~  131 (299)
                      ...+++.|+|...+.+||.||++.+|+++.........+++.....    .++++...  .. ......    .....+.
T Consensus       203 ~~~~~f~G~e~~~~~a~e~k~~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~----~~~g~~~  278 (468)
T TIGR03810       203 VTVWVFIGIEGASMLSARAEKRSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLE----HMVGTWG  278 (468)
T ss_pred             HHHHHHHhHhHHhhhHhhccCcccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHH----HHcchHH
Confidence            4678899999999999999985339996655555444444333221    12222110  00 000000    0000000


Q ss_pred             cc------CcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh-----ccHHHHH
Q psy16475        132 DK------PEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT-----SDVFLLI  200 (299)
Q Consensus       132 ~~------~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~~~l~  200 (299)
                      ..      .....++.|+.+...+|+++ +|+|||.+|++|+|+| |+++|++|++++.+++.+..+.     ..++.+.
T Consensus       279 ~~~i~~~~~is~~~~~~~~~~~~sR~~~-a~ardg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~  356 (468)
T TIGR03810       279 AVLINIGLIISILGAWLSWTLLPAEIPL-LMAKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAI  356 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            00      02235788999999999999 9999999999999999 7899999999998887655432     3588899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCC-CCCCCccchhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheeeeee
Q psy16475        201 TYSSFVESAFIMISVCGILYLRYTQP-DMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGV  279 (299)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (299)
                      ++++....+.|.+++++++++|+|++ +.+++++  ...+.+..+++++..+..   .......+.++.+.|.++|++.+
T Consensus       357 ~~~~~~~li~y~~~~~~~~~l~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~y~~~~  431 (468)
T TIGR03810       357 SLATSAILVPYLWSAAYQVKLSWRGGQERGRRKQ--LLIGLVALLYAVWLIYAA---GLKYLLLSAILYAPGIYFYARAR  431 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh--HHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987763 2233332  345666666666666644   34577788888899999987755


Q ss_pred             eecCCchhhhhcccceE
Q psy16475        280 KWRDKPEAFTRSFSKFI  296 (299)
Q Consensus       280 ~~~~~~~~~~~~~~~~~  296 (299)
                      |++ +.+.+++-|+.+.
T Consensus       432 ~~~-~~~~~~~~~~~~~  447 (468)
T TIGR03810       432 KEK-GGPVFTKGELLIF  447 (468)
T ss_pred             Hhc-CCCCCCHHHHHHH
Confidence            544 3445665555443

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10580 proY putative proline-specific permease; Provisional

Probab=99.85  E-value=3.1e-21  Score=179.07  Aligned_cols=217  Identities=15%  Similarity=0.161  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh----cchHHHH-----HHHHHHHhccceeeee
Q psy16475         58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL----EAPREVG-----MAVLITLSGVPVYLIG  127 (299)
Q Consensus        58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~----~~~~~~~-----~~~~~~~~g~~~~~~~  127 (299)
                      ....+++.|+|...+.+||.|||+| +|+++.........+++...+.    .+.++..     ........|.+.   .
T Consensus       206 ~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~---~  282 (457)
T PRK10580        206 QMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITF---A  282 (457)
T ss_pred             HHHHHHHhCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChh---H
Confidence            3457899999999999999999999 9996554433333333222221    1111110     000000111100   0


Q ss_pred             eeeccc--CcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh------ccHHHH
Q psy16475        128 VKWRDK--PEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT------SDVFLL  199 (299)
Q Consensus       128 ~~~~~~--~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l  199 (299)
                      ...-..  .....++.|+.+...+|+++ +|+|||.+|++|+|+| |+++|++|++++++++++....      ..++.+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~sR~~~-~~ardg~lP~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l  360 (457)
T PRK10580        283 ASILNFVVLTASLSAINSDVFGVGRMLH-GMAEQGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVI  360 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence            000000  01224678888999999999 9999999999999999 6899999999998765543222      237789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCC---CCCccchh--HHHHHHHHHHHHHHHhh-ccc-chHHHHHHHHHHHhhh
Q psy16475        200 ITYSSFVESAFIMISVCGILYLRYTQPDM---HRPIKVSL--WVPISFVLICVFLVVTP-ILE-APREVGMAVLITLSGV  272 (299)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~  272 (299)
                      .+++++...+.|.+.+.+++++||+++++   ++|||.|.  +.+.+.+.++++++... ..+ .+....++..+++++.
T Consensus       361 ~~~~~~~~~~~y~~~~~~~~~lr~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  440 (457)
T PRK10580        361 ASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLVFIIGLIGYHPDTRISLYVGFAWIVLLL  440 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999875332   34788875  35666666665555433 112 2345567777777887


Q ss_pred             heeeeee
Q psy16475        273 PVYLIGV  279 (299)
Q Consensus       273 ~~~~~~~  279 (299)
                      +.|...+
T Consensus       441 ~~y~~~~  447 (457)
T PRK10580        441 IGWMFKR  447 (457)
T ss_pred             HHHHHHh
Confidence            7777644

>KOG1289|consensus

Probab=99.85  E-value=1.7e-21  Score=175.71  Aligned_cols=220  Identities=13%  Similarity=0.120  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCce-ehh----HHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHhccceeeeeee-ecc
Q psy16475         60 IMISVCGILYLRYTQPDMHRPIK-VSL----WVPISFVLICVFLVVTPILEAP-REVGMAVLITLSGVPVYLIGVK-WRD  132 (299)
Q Consensus        60 ~~~~~~g~~~~~~~~~E~~~p~k-iP~----~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~-~~~  132 (299)
                      ..+++.|+|...|.+||.|||.| .||    .+.+.++..+.+.+.++++.++ .+.....   -.|.|+-.++.+ .++
T Consensus       261 ~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns---~~g~p~~~i~~~~lg~  337 (550)
T KOG1289|consen  261 PAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNS---SLGQPIVQIYYQALGK  337 (550)
T ss_pred             ceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcC---CCCChHHHHHHHhcCC
Confidence            34577999999999999999999 999    4455666677777777776653 3322221   234443221111 122


Q ss_pred             cCcc---------cccccchhhhhhhhhhhccccccCccc--hhhhhcCCCCCCchhHHHHHHHHHHHHHHh-----ccH
Q psy16475        133 KPEA---------FTRSFNALTYFVQKLMCFVGARYGHFP--AMLSHINISRFTPTPSLVFLNILSLFMLFT-----SDV  196 (299)
Q Consensus       133 ~~~~---------~~~~~~~~~~~~sR~~~~~~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~  196 (299)
                      +...         .+-+..+.+...||..| +.+|||.+|  ++++|+||++++|.||+++..+++.++.++     .++
T Consensus       338 k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~-afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af  416 (550)
T KOG1289|consen  338 KGAVFLLSLIIIALFFMGISSLTASSRLVY-AFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAF  416 (550)
T ss_pred             CceEehhHHHHHHHHHhhHHHHHHHHHHHh-hhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            2211         12355667888999999 999999999  899999998899999999999999987665     359


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchhH------HHHHHHHHHHHHHHhhcccc------hHHHHHH
Q psy16475        197 FLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLW------VPISFVLICVFLVVTPILEA------PREVGMA  264 (299)
Q Consensus       197 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~------~~~~~~~  264 (299)
                      +.+.+.+.+...++|.+..++.+..+|+ ...++||..+.+      ..+++.++++.++..|...+      ++.+++.
T Consensus       417 ~Alfs~a~i~l~~Ay~iP~~~rlf~~r~-~f~~gp~~lGk~s~p~~~i~v~w~lf~~vil~fP~~~pvT~~~MNya~VV~  495 (550)
T KOG1289|consen  417 NALFSAAAIALFIAYAIPIFCRLFFGRD-DFRPGPFNLGKFSKPIGIIAVLWVLFMIVILCFPSVYPVTADNMNYACVVY  495 (550)
T ss_pred             HHHHHHHHHHHHHHHHHhHHhheeeccc-ccCCCCccccccccchHHHHHHHHHHHHHHHhCCcccCCCcccCceEEEee
Confidence            9999999999999999999988877776 334567776653      45666666666666665443      2456666


Q ss_pred             HHHHHhhhheeeeeeeecCC
Q psy16475        265 VLITLSGVPVYLIGVKWRDK  284 (299)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~  284 (299)
                      ++.++...++|+...||..+
T Consensus       496 gg~~lf~li~~~~~~~k~f~  515 (550)
T KOG1289|consen  496 GGVMLFCLIYYFVSARKWFK  515 (550)
T ss_pred             hhhhhhhhheeeeecceeec
Confidence            66777777777777555443

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=99.85  E-value=4e-21  Score=178.77  Aligned_cols=216  Identities=19%  Similarity=0.189  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh---hcch-HHHHHHHHHHHhccceeeeeeeec
Q psy16475         57 SAFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI---LEAP-REVGMAVLITLSGVPVYLIGVKWR  131 (299)
Q Consensus        57 ~~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~---~~~~-~~~~~~~~~~~~g~~~~~~~~~~~  131 (299)
                      .....++|.|+|...+.+||.|||+| +||++....+.....++....   ...| ++...      ...|........+
T Consensus       217 ~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~------~~~p~~~~~~~~g  290 (469)
T PRK11049        217 FQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVP------DKSPFVELFVLVG  290 (469)
T ss_pred             HHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCc------cCCcHHHHHHHcC
Confidence            34567899999999999999999999 999664333332333322222   1122 21110      0011100000000


Q ss_pred             cc-C---------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHH---HHh-----
Q psy16475        132 DK-P---------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFM---LFT-----  193 (299)
Q Consensus       132 ~~-~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~---~~~-----  193 (299)
                      .. .         ....++.|+.+.+.+|.++ +|+|||.+|++|+|+| |+++|++|++++++++.+.   ...     
T Consensus       291 ~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~-a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~  368 (469)
T PRK11049        291 LPAAASVINFVVLTSAASSANSGVFSTSRMLF-GLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVI  368 (469)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHH
Confidence            00 0         1224678888999999999 9999999999999999 5699999999998765431   111     


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC--CCccchhH--HHHHHHHHHHHHHHh-hcccchHHHHHHHHH-
Q psy16475        194 SDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMH--RPIKVSLW--VPISFVLICVFLVVT-PILEAPREVGMAVLI-  267 (299)
Q Consensus       194 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-  267 (299)
                      ..++.+.+.++....+.|.+.+.+++++||++||.+  +|||.|..  .+++.++.+.+.... ....++.......+. 
T Consensus       369 ~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~p~~~~~~pf~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (469)
T PRK11049        369 GAFTLVTTVSAILFMFVWTIILCSYLVYRKQRPHLHEKSIYKMPLGKLMCWVCMAFFAFVLVLLTLEDDTRQALIVTPLW  448 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccCcCcchHHHHHHHHHHHHHHHHHHchhHHHHHHHHHHH
Confidence            247778889999999999999999999999988765  58998763  444444444444333 222234333333333 


Q ss_pred             HHhhhheeeeeee
Q psy16475        268 TLSGVPVYLIGVK  280 (299)
Q Consensus       268 ~~~~~~~~~~~~~  280 (299)
                      ..+....|++.+|
T Consensus       449 ~~~~~~~~~~~~~  461 (469)
T PRK11049        449 FIALGLGYLFIGK  461 (469)
T ss_pred             HHHHHHHHHHHcc
Confidence            3334444544443

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=99.85  E-value=4.4e-21  Score=173.43  Aligned_cols=253  Identities=13%  Similarity=0.160  Sum_probs=172.2

Q ss_pred             chHHHHHHHHHHHHHHHhcChH-------H------HHH-Hhh-HHHHHHHHHHHHHHHHHHhcCCCCCCCce-ehhHHH
Q psy16475         25 PTPSLVFLNILSLFMLFTSDVF-------L------LIT-YSS-FVESAFIMISVCGILYLRYTQPDMHRPIK-VSLWVP   88 (299)
Q Consensus        25 P~~ail~~~vi~~i~~~~~~~~-------~------l~~-~~~-~~~~~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~   88 (299)
                      |+.+++...+++++....+..+       .      +.+ +.+ ........+++.|.|.+...++|.+||+| +|+++.
T Consensus       193 KV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik  272 (541)
T COG0833         193 KVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIK  272 (541)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHH
Confidence            4677777777777766543211       0      100 111 12234556788999999999999999999 999777


Q ss_pred             HHHHHHHHHHHHHHhh-------cchHHHHHHHHHHHhccceeeeeeeeccc-----C-----cccccccchhhhhhhhh
Q psy16475         89 ISFVLICVFLVVTPIL-------EAPREVGMAVLITLSGVPVYLIGVKWRDK-----P-----EAFTRSFNALTYFVQKL  151 (299)
Q Consensus        89 ~~~~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~sR~  151 (299)
                      -.+..+.++++...+.       .||. +..+.......-|+-...+..+-.     .     ....+..||.+++.||+
T Consensus       273 ~vfwRIl~FYi~si~~ig~lvPy~dp~-Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~  351 (541)
T COG0833         273 QVFWRILLFYILSIFVIGLLVPYNDPR-LLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRM  351 (541)
T ss_pred             HHHHHHHHHHHHHHHHheEEccCCCcc-cccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHH
Confidence            7766666665544432       2322 110000001111221111111110     1     23458999999999999


Q ss_pred             hhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy16475        152 MCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTS------DVFLLITYSSFVESAFIMISVCGILYLRYTQ  225 (299)
Q Consensus       152 ~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~  225 (299)
                      +| +||+||..||+|+|+| |+|+|.+|++++.+++++..+..      .++.+.++++....+.|..+++++++.||..
T Consensus       352 L~-sLA~~g~APk~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shirFR~A~  429 (541)
T COG0833         352 LY-SLAKQGKAPKIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHIRFRRAM  429 (541)
T ss_pred             HH-HHHhcCCCchHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99 9999999999999999 88999999999999998765541      4899999999999999999999999999874


Q ss_pred             CC-----CCCCccchh--HHHHHHHHHHHHHHHhhccc--ch--------HHHHHHHHHHHhhhheeeeeee
Q psy16475        226 PD-----MHRPIKVSL--WVPISFVLICVFLVVTPILE--AP--------REVGMAVLITLSGVPVYLIGVK  280 (299)
Q Consensus       226 ~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~~~  280 (299)
                      +.     .+-|||.|.  +.|+.++..++.+++...+.  .|        .....+..++++....|.+.+|
T Consensus       430 ~~QG~s~~~L~yks~~~p~g~~~~~~~~~li~i~q~y~af~p~~~~~~~F~~~Yl~~pi~i~~y~~yk~~~k  501 (541)
T COG0833         430 KAQGRSLDELPYKSPFGPYGPIYGLILCILILIGQGYVAFFPIGFSAGDFFAAYLGLPIFIAIYIGYKLYKK  501 (541)
T ss_pred             HHcCCChhhcCccCCCccHHHHHHHHHHHHHHHHcchheeecCCccHHHHHHHHHHHHHHHHHHHHheeEec
Confidence            32     134899987  58888888888777763332  11        2456667777777777777665

>PRK10238 aromatic amino acid transporter; Provisional

Probab=99.84  E-value=1e-20  Score=175.33  Aligned_cols=189  Identities=16%  Similarity=0.172  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHH---h-hcchHHHHHHHHHHHhccceeeeeeeeccc
Q psy16475         59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTP---I-LEAPREVGMAVLITLSGVPVYLIGVKWRDK  133 (299)
Q Consensus        59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~---~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  133 (299)
                      ...+++.|+|...+.+||.|||+| +||++..........++...   . ..+.++..      ..+.|+.......+..
T Consensus       208 ~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~------~~~sP~~~~~~~~g~~  281 (456)
T PRK10238        208 IIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVT------ADTSPFVLIFHELGDT  281 (456)
T ss_pred             HHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccC------CCCCcHHHHHHHcCCh
Confidence            467899999999999999999999 99966433332222222111   1 12222111      0112221111111111


Q ss_pred             C----------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh------ccHH
Q psy16475        134 P----------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT------SDVF  197 (299)
Q Consensus       134 ~----------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~  197 (299)
                      .          ....++.|+.+++.+|++| +|+|||.+|++|+|+| |+++|++|++++++++.+..+.      ..++
T Consensus       282 ~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~-a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~  359 (456)
T PRK10238        282 FVANALNIVVLTAALSVYNSCVYCNSRMLF-GLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFG  359 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence            1          1224688999999999999 9999999999999999 6799999999999998776543      3488


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCCC--CCCccchh--HHHHHHHHHHHHHHHhhcc
Q psy16475        198 LLITYSSFVESAFIMISVCGILYLRYTQPDM--HRPIKVSL--WVPISFVLICVFLVVTPIL  255 (299)
Q Consensus       198 ~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~  255 (299)
                      .+.++++....+.|.+..++++++||++++.  +++|+.+.  +.++..++.+.+..+....
T Consensus       360 ~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  421 (456)
T PRK10238        360 LLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLLFMAAVLVIMLM  421 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCccHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999886643  34566544  3555555555555544443

>PRK11021 putative transporter; Provisional

Probab=99.79  E-value=1.6e-18  Score=158.92  Aligned_cols=180  Identities=16%  Similarity=0.138  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh---cch-HHHHHHHHHHHhccceeeeee-eec
Q psy16475         58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL---EAP-REVGMAVLITLSGVPVYLIGV-KWR  131 (299)
Q Consensus        58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~---~~~-~~~~~~~~~~~~g~~~~~~~~-~~~  131 (299)
                      ....+++.|+|...+.+||.|||+| +||++..........++.....   ..+ .+....      +.+...... ..+
T Consensus       184 ~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~G  257 (410)
T PRK11021        184 GVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAA------AASLPGIFVQLFG  257 (410)
T ss_pred             HHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhc------cccHHHHHHHHhC
Confidence            3456799999999999999999999 9996655554444443332221   111 111000      000000000 001


Q ss_pred             ccC---------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh-----ccHH
Q psy16475        132 DKP---------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT-----SDVF  197 (299)
Q Consensus       132 ~~~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~~  197 (299)
                      ...         ....++.|+.+.+.+|+++ +|+|||.+|++|+|+| |+|+|++|++++.+++.+..+.     .+++
T Consensus       258 ~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~-a~ardg~lP~~~~k~~-~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~  335 (410)
T PRK11021        258 GYALWVICVIGYLACFASVNIYTQSFARLVW-SQAREGRPPSYLARLS-ARGVPVNALNAVLGCCAVSILLIYALGLNLE  335 (410)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHccCCccHHHHhhc-cCCCcHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            111         1223677888889999999 9999999999999999 7899999999998887765432     4788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhhc
Q psy16475        198 LLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPI  254 (299)
Q Consensus       198 ~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (299)
                      .+.+.++....+.|.+..++.++++|+++         ...|++..+.+++++....
T Consensus       336 ~l~~~~~~~~li~y~~~~~a~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~  383 (410)
T PRK11021        336 ALIAYANGIFVLIYLLCMLAACKLLKGRY---------RPLAVLGCLLCLLLLVMLG  383 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccch---------HHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999886531         2468888888888877543

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=99.79  E-value=8.4e-19  Score=163.54  Aligned_cols=175  Identities=14%  Similarity=0.142  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHH----HHHHHHHhhcch-HHHHHHHHHHHhccceeeeeeeecc
Q psy16475         59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLIC----VFLVVTPILEAP-REVGMAVLITLSGVPVYLIGVKWRD  132 (299)
Q Consensus        59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~----~~~i~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~  132 (299)
                      ...+++.|+|...+.+||.|||+| +||++.....+..    .+.+......++ ++....    ..+.|.. .....+.
T Consensus       221 ~~~~~f~G~e~~~~~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~-~~~~~g~  295 (475)
T TIGR03428       221 MAAYVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLA----AEGLPYV-LSAVLDS  295 (475)
T ss_pred             HHHHHhcCcchHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcC----CCchHHH-HHHHhCc
Confidence            456789999999999999999999 9995544443322    222222222111 111100    0111110 0000000


Q ss_pred             cC---------cccccccchhhhhhhhhhhccccccCccc--hhhhhcCCCCCCchhHHHHHHHHHHHHHHh-----ccH
Q psy16475        133 KP---------EAFTRSFNALTYFVQKLMCFVGARYGHFP--AMLSHINISRFTPTPSLVFLNILSLFMLFT-----SDV  196 (299)
Q Consensus       133 ~~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~  196 (299)
                      ..         ....++.++.+.+.+|++| ++||||.+|  ++|+|+|||+++|++|+++.++++.++.+.     ..|
T Consensus       296 ~~~~~~~~~~~i~~~~~~~~~~~~~sR~~~-a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af  374 (475)
T TIGR03428       296 PWGTVLLVDVAIAILVCTLAIQTAGSRLMF-SMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALF  374 (475)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            00         1123577888999999999 999999999  489999999999999999999998876654     247


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccC------CCCCCCccchhHHH
Q psy16475        197 FLLITYSSFVESAFIMISVCGILYLRYTQ------PDMHRPIKVSLWVP  239 (299)
Q Consensus       197 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~~------~~~~~~~~~~~~~~  239 (299)
                      +.+.++++...++.|.+.....+..|+|+      +..++||+.+.+..
T Consensus       375 ~~l~s~~~~~~~~~Y~~~~~~~l~~~~~~~~~~~~~~~~g~f~lg~~g~  423 (475)
T TIGR03428       375 ATLASVCIVLIYLAYLLVTVPLLLRRLRGWPRGDQTDPAGLFSLGRWGL  423 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCCCCCchhHH
Confidence            88999999999999999888877665442      12467899887533

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=99.78  E-value=1.3e-18  Score=160.60  Aligned_cols=183  Identities=14%  Similarity=0.196  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh---cchHHHHHHHHHHHhccceeeeeee----
Q psy16475         58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL---EAPREVGMAVLITLSGVPVYLIGVK----  129 (299)
Q Consensus        58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~----  129 (299)
                      ....+++.|+|...+.+||.|||+| +||++.........+++.....   ..|.+....     .+.|+....+.    
T Consensus       194 ~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~p~~~~~~-----~~~p~~~~~~~~~g~  268 (435)
T PRK10435        194 LLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMFPASVMAA-----SGAPFAISASTILGN  268 (435)
T ss_pred             HHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhc-----CCCcHHHHHHHHhch
Confidence            3567899999999999999999999 9996666555544444433332   122111110     11111000000    


Q ss_pred             eccc------CcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHH----h------
Q psy16475        130 WRDK------PEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLF----T------  193 (299)
Q Consensus       130 ~~~~------~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~----~------  193 (299)
                      +...      .....++.|+.++..+|..+ +++|||.+||+|+|+| |+|+|.+|++++++++.++..    .      
T Consensus       269 ~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~-~~ardG~lP~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~  346 (435)
T PRK10435        269 WAAPLVSAFTAFACLTSLGSWMMLVGQAGV-RAANDGNFPKVYGEVD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGK  346 (435)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence            0000      01224677888899999999 8999999999999999 899999999998877654321    1      


Q ss_pred             --ccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchhHHHHHHHHHHHHHHH
Q psy16475        194 --SDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVV  251 (299)
Q Consensus       194 --~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (299)
                        ..++.+.++++....+.|++++++++++|+  ++.++++  ..+.+.+...++++.+.
T Consensus       347 ~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~~--~~~~~~~--~~~~~~~~~~~~~~~~~  402 (435)
T PRK10435        347 ASDLFGELTGIAVLLTMLPYFYSCVDLIRFEG--VNIRNFV--SLICSVLGCVFCFIALM  402 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhHHH--HHHHHHHHHHHHHHHHH
Confidence              247889999999999999999999986654  3222222  11355555555555554

>TIGR00930 2a30 K-Cl cotransporter

Probab=99.78  E-value=2.6e-18  Score=169.78  Aligned_cols=193  Identities=14%  Similarity=0.088  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh---cchHHHHH---HHHHH-Hhcc---------c
Q psy16475         60 IMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL---EAPREVGM---AVLIT-LSGV---------P  122 (299)
Q Consensus        60 ~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~---~~~~~~~~---~~~~~-~~g~---------~  122 (299)
                      .+.++.|++.....+||.|||+| +|+++.....+..++++...+.   ..+.+...   ..... ..|.         |
T Consensus       289 ~F~A~tGi~agan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p  368 (953)
T TIGR00930       289 FFPSVTGILAGANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNT  368 (953)
T ss_pred             HHHHHHHHHHHHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccc
Confidence            34579999999999999999999 9996555554444444433321   11111000   00000 0000         0


Q ss_pred             e-ee------eee-eecc-------cCcccccccchhhhhhhhhhhccccccCccc--hhhhhcCCCCCCchhHHHHHHH
Q psy16475        123 V-YL------IGV-KWRD-------KPEAFTRSFNALTYFVQKLMCFVGARYGHFP--AMLSHINISRFTPTPSLVFLNI  185 (299)
Q Consensus       123 ~-~~------~~~-~~~~-------~~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~  185 (299)
                      . +.      ... ....       ......++.++.+.+++|+++ ++||||.+|  ++|+|+|+|+++|++|++++++
T Consensus       369 ~~~gL~~~~~~~~~~~~~~~lI~ig~~~stlss~la~l~~asRvl~-AmArDg~lP~l~~fakv~~k~~tP~~Alllt~i  447 (953)
T TIGR00930       369 CSYGLMNNLQVMSLVSPFPPLITAGIFSATLSSALASLVSAPRLFQ-ALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAF  447 (953)
T ss_pred             hhhhhcchHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCcchhhcccCCCCCCcHHHHHHHHH
Confidence            0 00      000 0000       001224678889999999999 999999999  8999999999999999999999


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC-ccchh-HHHHHHHHHHHHHHHhh
Q psy16475        186 LSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRP-IKVSL-WVPISFVLICVFLVVTP  253 (299)
Q Consensus       186 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~  253 (299)
                      +++++.++++++.+..+.+...+++|.++.++.+.+|.+++...|| ||... ++++++++.++++.+..
T Consensus       448 Ia~l~ili~~l~~ia~lis~~fLl~Y~lvnla~~~l~~~~~p~~RP~fk~~~~~~sllG~l~c~~lmf~i  517 (953)
T TIGR00930       448 IAEGFILIAELNTIAPIISNFFLASYALINFSCFHASLLRSPGWRPRFKYYHWWLSLLGASLCCAIMFLI  517 (953)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchHHHHHHHHHHHHHHHHHH
Confidence            9999988889999999999999999999999999888655433344 45433 57888888887776654

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=99.77  E-value=1.9e-18  Score=161.90  Aligned_cols=174  Identities=16%  Similarity=0.168  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh---cch-HHHH-------HH---HHHHHhccc
Q psy16475         58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL---EAP-REVG-------MA---VLITLSGVP  122 (299)
Q Consensus        58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~---~~~-~~~~-------~~---~~~~~~g~~  122 (299)
                      ....+++.|+|...+.+||.|||+| +||++.........+++.....   ..| ++..       ..   ......|.+
T Consensus       218 ~~~~~~f~G~e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  297 (496)
T PRK15238        218 VFAIFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYVLMNNLGYT  297 (496)
T ss_pred             HHHHHHHHhHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHHHHHHHHHH
Confidence            3456899999999999999999999 9996655554444443322211   111 1100       00   000011110


Q ss_pred             eeeeee--ee-----ccc---------CcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHH
Q psy16475        123 VYLIGV--KW-----RDK---------PEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNIL  186 (299)
Q Consensus       123 ~~~~~~--~~-----~~~---------~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i  186 (299)
                      ......  ..     +..         .....++.++..++.+|.++ +++|||.+||+|+|+| |+++|++|+++++++
T Consensus       298 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i  375 (496)
T PRK15238        298 LGHALGLSPAASLTLGVWFARITGLSMFLAYTGAFFTLSYSPLKQLI-EGTPKALWPKKMTKLN-KNGMPANAMWLQCII  375 (496)
T ss_pred             HHHHhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-hhCccCcccHHHHhhC-cCCCcHHHHHHHHHH
Confidence            000000  00     000         01123577777888899988 7889999999999999 899999999999988


Q ss_pred             HHHHHHh---c---c---HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccc
Q psy16475        187 SLFMLFT---S---D---VFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKV  234 (299)
Q Consensus       187 ~~~~~~~---~---~---~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  234 (299)
                      +.+....   +   .   |+.+.++++....+.|.+.+.+++++|| +|+.+|||+.
T Consensus       376 ~~l~~~~~~~~~~~~~~~f~~l~~l~~~~~li~y~~~~~a~i~~r~-~~~~~r~~~~  431 (496)
T PRK15238        376 VSVFILLVSFGGDAASAFFNILTLMANVSMTLPYLFLAGAFPFFKK-KKDIDRPFVV  431 (496)
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcee
Confidence            7765322   1   1   6789999999999999999999999876 5666777665

>KOG1286|consensus

Probab=99.75  E-value=2.5e-17  Score=153.58  Aligned_cols=176  Identities=16%  Similarity=0.165  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh---cchHHH--HHHHHHHHhcccee-eeee
Q psy16475         56 ESAFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL---EAPREV--GMAVLITLSGVPVY-LIGV  128 (299)
Q Consensus        56 ~~~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~---~~~~~~--~~~~~~~~~g~~~~-~~~~  128 (299)
                      ......++|.|.|.+...+||.|||+| +|+++......+..+++.....   .-|.+.  +....  ....|+. ....
T Consensus       237 ~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~--~~~spF~iai~~  314 (554)
T KOG1286|consen  237 GAATAFFSFIGFELVATTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGA--ALASPFVIAIGN  314 (554)
T ss_pred             HHHHHHHHHhhHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCC--ccccHHHHHHhc
Confidence            345677899999999999999999999 9997766666555555544432   111100  00000  1111110 0000


Q ss_pred             -eecc---cC-----cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhcc----
Q psy16475        129 -KWRD---KP-----EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSD----  195 (299)
Q Consensus       129 -~~~~---~~-----~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~----  195 (299)
                       ..+.   ..     ....+++|+.++..+|.++ +||+||.+||+|+++|++ ++|++|++++++.+.+..+..+    
T Consensus       315 ~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~-amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~  392 (554)
T KOG1286|consen  315 AGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLY-ALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAA  392 (554)
T ss_pred             cCccccchhhhHHHHHHHHHHHHHHhHHhHHHHH-HHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccc
Confidence             0000   01     2235789999999999999 999999999999999966 9999999999999998777633    


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC-----CCCCccch
Q psy16475        196 --VFLLITYSSFVESAFIMISVCGILYLRYTQPD-----MHRPIKVS  235 (299)
Q Consensus       196 --~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~~~  235 (299)
                        ++++.++.+.+..+.|...+.+++++|+..++     .+.+|+.+
T Consensus       393 ~~f~~L~~~~si~tl~~w~~i~~~~i~~R~a~~~q~~~~~~~~~~s~  439 (554)
T KOG1286|consen  393 TVFNWLVNLSSIGTLFAWTLVALSHLRFRYAMKVQGRSLDELPYKSP  439 (554)
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHeeeeecccccCCCcccccccCC
Confidence              69999999999999999999999999887422     23456665

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.75  E-value=7e-19  Score=164.33  Aligned_cols=177  Identities=19%  Similarity=0.206  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh----cchHHHHH-H---------HHHHHhccc
Q psy16475         58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL----EAPREVGM-A---------VLITLSGVP  122 (299)
Q Consensus        58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~----~~~~~~~~-~---------~~~~~~g~~  122 (299)
                      ...++++.|+|.....+||.|||+| +||++....+....+++...+.    .+.++... .         ......+.+
T Consensus       207 ~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~  286 (478)
T PF00324_consen  207 VFAFFAFVGFESIAILAEEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGP  286 (478)
T ss_pred             hhhhcccccccccccccccCCCchhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccc
Confidence            3466789999999999999999999 9997666665555555544432    11111100 0         000011111


Q ss_pred             eeeeeeeecccCcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhc------cH
Q psy16475        123 VYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTS------DV  196 (299)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~------~~  196 (299)
                      .... ...........++.|+.++..+|.++ +|+|||.+|+++.+.|+|+++|++|++++++++.+..+..      .+
T Consensus       287 ~~~~-i~~~~~l~s~~s~~~~~~~~~sR~l~-ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~  364 (478)
T PF00324_consen  287 WLAW-IVNAGILISAFSSANASLYAASRLLY-AMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVF  364 (478)
T ss_pred             cccc-eecccchhhhhhhhhhhhcccceeeh-hhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHH
Confidence            0000 00001113345788999999999999 9999999996666678899999999999999988766542      25


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC-----CCCccchh
Q psy16475        197 FLLITYSSFVESAFIMISVCGILYLRYTQPDM-----HRPIKVSL  236 (299)
Q Consensus       197 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~~~~  236 (299)
                      +.+.+..+....+.|.+...+++++||+.+..     +.|++.+.
T Consensus       365 ~~~~~~~~~~~l~~~~~~~~s~~~~r~~~~~~~~~~~~~~~~~~~  409 (478)
T PF00324_consen  365 NWLLNISTISNLIVYILINISYIRFRKKFKYRGRSISELPFKSPF  409 (478)
T ss_pred             HHHhhhhhhhhhhHHHhhhhhhhhhhhhhccccccccccChhhhh
Confidence            66788889999999999999999888874322     23666655

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=99.74  E-value=1.9e-17  Score=154.12  Aligned_cols=174  Identities=18%  Similarity=0.330  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh---cchH-HHHHHHHHHHhccceeeeeeeecc
Q psy16475         58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL---EAPR-EVGMAVLITLSGVPVYLIGVKWRD  132 (299)
Q Consensus        58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~---~~~~-~~~~~~~~~~~g~~~~~~~~~~~~  132 (299)
                      ....+++.|+|...+.+||+|||+| +|+++....+....+++.....   ..+. +....    ....|..........
T Consensus       208 ~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~~~~~g  283 (466)
T COG0531         208 LLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAAS----APSAPLALAALFGGG  283 (466)
T ss_pred             HHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhcc----CCCccHHHHHHHcCc
Confidence            3457899999999999999999988 9997666555444444433332   1222 11111    000121111111110


Q ss_pred             -cC---------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHH-HHHHhc----cHH
Q psy16475        133 -KP---------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSL-FMLFTS----DVF  197 (299)
Q Consensus       133 -~~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~-~~~~~~----~~~  197 (299)
                       ..         ....++.++...+.+|..+ +|+|||.+|++|+|+|+|+++|+++++++++++. +.....    +++
T Consensus       284 ~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~-~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~  362 (466)
T COG0531         284 NWGAIIIAILALLSLFGSLLAWILAVSRVLY-AMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFN  362 (466)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHH
Confidence             11         1223677889999999999 9999999999999999999999999999999999 333322    478


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchh
Q psy16475        198 LLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSL  236 (299)
Q Consensus       198 ~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  236 (299)
                      .+.++++....+.|.+...+..++|+++|+.+++++.+.
T Consensus       363 ~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~  401 (466)
T COG0531         363 ALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFRLPL  401 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccc
Confidence            999999999999999999999999999887777777665

>KOG1287|consensus

Probab=99.71  E-value=4.6e-17  Score=146.81  Aligned_cols=152  Identities=41%  Similarity=0.778  Sum_probs=136.9

Q ss_pred             eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q psy16475          2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPI   81 (299)
Q Consensus         2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~E~~~p~   81 (299)
                      ++++||||++|+.|+++|++..+|+.++++++.+++++...+|+++++|+.++..|..+.+++.|+.++|+++++.+||.
T Consensus       313 ~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPi  392 (479)
T KOG1287|consen  313 FYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPI  392 (479)
T ss_pred             HHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCE
Confidence            57899999999999999988889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eehhHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHhccceeeeeeeecccCcccccccchhhhhhhhhhh
Q psy16475         82 KVSLWVPISFVLICVFLVVTPILEA-PREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFNALTYFVQKLMC  153 (299)
Q Consensus        82 kiP~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~  153 (299)
                      |+|..++..++..+..++..++..+ +.+...+..+...|.++|+...+++.++.|+....++.+...+.+..
T Consensus       393 Kvpl~~p~~~~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i~~~~~p~~~~~~~~~it~~~q~l~~  465 (479)
T KOG1287|consen  393 KVPLFIPILFLLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFIHWKKKPKWLRKISESITRVCQKLFN  465 (479)
T ss_pred             eeeeehHHHHHHHHHHHhheeeeecCCccchhHHHHHHHhhhhheEEEEecCCcHHHHHhhHHHHHHHHHHHH
Confidence            9999999999999999988888776 56678888889999999999888888888887766776666666654

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=99.62  E-value=5.6e-16  Score=142.77  Aligned_cols=190  Identities=18%  Similarity=0.294  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCceehhHHHHHHHHHHHHHHHHHh----hcchHHHHHHHHHHHhccceeeeeeeec-
Q psy16475         57 SAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPI----LEAPREVGMAVLITLSGVPVYLIGVKWR-  131 (299)
Q Consensus        57 ~~~~~~~~~g~~~~~~~~~E~~~p~kiP~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~-  131 (299)
                      .....+++.|+|...+.+||.|| +++||++....+....++.....    ..++++......   ...+........+ 
T Consensus       194 ~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  269 (426)
T PF13520_consen  194 FSVAFFAFSGFEAIASLAEENKN-KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSN---SPSPFAVLASAVGG  269 (426)
T ss_dssp             HHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTC---HHCHHHHHHHHHHC
T ss_pred             HHHHHhhcccccccccccccccc-hhheeecccchhHHHHHHhhhhheeeecccchhhhcccc---cccccchhhccccc
Confidence            34466788999999999999887 34999665555544444433322    222222210000   0000000001111 


Q ss_pred             ccC---------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHH-h-----ccH
Q psy16475        132 DKP---------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLF-T-----SDV  196 (299)
Q Consensus       132 ~~~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~-~-----~~~  196 (299)
                      ...         ....++.|+.+.+.+|.++ +++|||.+|++|+|+| |+++|++|++++++++.++.+ .     .++
T Consensus       270 ~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~-~~a~d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~  347 (426)
T PF13520_consen  270 SWLAIIVSIAAILSLFGSINAFIFGASRLLY-AMARDGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSF  347 (426)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHH
T ss_pred             cccccccccccccccccccchhhcchhhccc-ccccccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHH
Confidence            111         1224688889999999999 9999999999999999 999999999999999965532 2     358


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC-CccchhHHHHHHHHHHHHHHHhhc
Q psy16475        197 FLLITYSSFVESAFIMISVCGILYLRYTQPDMHR-PIKVSLWVPISFVLICVFLVVTPI  254 (299)
Q Consensus       197 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  254 (299)
                      +.+.+..+....+.|.+..++.+++|+|+|+.+| +++.  ..+++..+..++......
T Consensus       348 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~i~~~~~~~~~~~~~~  404 (426)
T PF13520_consen  348 DILVSLSSVGYLISYILVILAVLFLRRKRPDLKRIPYRP--PVGIIGIIIILFVIIASF  404 (426)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSGH-HHHH--HHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCCCCcch--HHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999887655 3332  234444444444444443

...

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=99.48  E-value=1.4e-13  Score=127.55  Aligned_cols=129  Identities=21%  Similarity=0.317  Sum_probs=101.1

Q ss_pred             CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy16475          1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRP   80 (299)
Q Consensus         1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~E~~~p   80 (299)
                      ++|+|||||.+|++|+|+|||+|+|+++++++.+++.++...++.+.+.+..+...+..+...+.+....|++ ++.++|
T Consensus       306 ~~~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~-~~~~~~  384 (445)
T PRK11357        306 LEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKR-DDYKPL  384 (445)
T ss_pred             HHHHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecC-CCCCCC
Confidence            3689999999999999999999999999999999998888778888888888888888888888888888765 566889


Q ss_pred             ceehh--HHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHhccceeeeeeee
Q psy16475         81 IKVSL--WVPISFVLICVFLVVTPILEAPRE-VGMAVLITLSGVPVYLIGVKW  130 (299)
Q Consensus        81 ~kiP~--~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~  130 (299)
                      +|.|.  ..+...+..+.+++......++.+ ...+......|.++|+..+++
T Consensus       385 ~k~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~  437 (445)
T PRK11357        385 WRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKR  437 (445)
T ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhhhHHhheech
Confidence            99876  455556555555554444455543 334666778999988766544

>TIGR00911 2A0308 L-type amino acid transporter

Probab=99.46  E-value=1.2e-13  Score=129.90  Aligned_cols=125  Identities=44%  Similarity=0.895  Sum_probs=101.7

Q ss_pred             CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy16475          1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRP   80 (299)
Q Consensus         1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~E~~~p   80 (299)
                      ++|+|||||.+|++|+|+|+|+++|++++++.++++.+....++..++.+..+...+..+.++..+...+|+++||.+||
T Consensus       343 ~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~rp  422 (501)
T TIGR00911       343 LFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNRP  422 (501)
T ss_pred             HHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCC
Confidence            36899999999999999999999999999999888887776778888888777888889999999999999999999999


Q ss_pred             ceehhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhccceee
Q psy16475         81 IKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYL  125 (299)
Q Consensus        81 ~kiP~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~  125 (299)
                      +|.|...+...++.+.+.+...+..++.+...+......|.++|.
T Consensus       423 ~r~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~  467 (501)
T TIGR00911       423 IKVPLFFPVFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGVPVYF  467 (501)
T ss_pred             ccCchHHHHHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHHHH
Confidence            999886666666666666555555555554555666677877765

>TIGR00909 2A0306 amino acid transporter

Probab=99.43  E-value=7.4e-13  Score=122.19  Aligned_cols=121  Identities=19%  Similarity=0.263  Sum_probs=94.6

Q ss_pred             eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q psy16475          2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPI   81 (299)
Q Consensus         2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~E~~~p~   81 (299)
                      +|++||||.+|++|+|+|+|+++|++++++..+++.+....++++.+.+..+......|.+.+.+...+|++.+|.++|+
T Consensus       305 ~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~~~~~  384 (429)
T TIGR00909       305 LFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAF  384 (429)
T ss_pred             HHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Confidence            57899999999999999999999999999999888887767788888888888888999999999999999999999999


Q ss_pred             eehhH--HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhccceee
Q psy16475         82 KVSLW--VPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYL  125 (299)
Q Consensus        82 kiP~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~  125 (299)
                      |.|..  .+...+..+.   ......++.+..........|.++|.
T Consensus       385 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~y~  427 (429)
T TIGR00909       385 RCPLVPVLPVLVVSYCI---YLLLNLGPGTTVWFLVWMLLGSVFYF  427 (429)
T ss_pred             CCCcchHHHHHHHHHHH---HHHHHccHHHHHHHHHHHHHHHHHHH
Confidence            97652  2222222222   22233455666667777788887663

>TIGR00908 2A0305 ethanolamine permease

Probab=99.41  E-value=1.2e-12  Score=121.23  Aligned_cols=106  Identities=24%  Similarity=0.342  Sum_probs=87.3

Q ss_pred             CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy16475          1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRP   80 (299)
Q Consensus         1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~E~~~p   80 (299)
                      ++|+|||||.+|++|+|+| |+|+|++|+++..+++.+....++.+.+.+..+...+..|.++..+....|++++|.++|
T Consensus       302 ~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~~rp  380 (442)
T TIGR00908       302 QIFALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERP  380 (442)
T ss_pred             HHHHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            3689999999999999999 999999999999998888777777777777778888889999999999999999999999


Q ss_pred             ceehh--HHHHHHHHHHHHHHHHHhhcch
Q psy16475         81 IKVSL--WVPISFVLICVFLVVTPILEAP  107 (299)
Q Consensus        81 ~kiP~--~~~~~~~~~~~~~i~~~~~~~~  107 (299)
                      +|.|.  ..++..++.+.+.+......++
T Consensus       381 ~~~p~~~~~~~l~~~~~~~~l~~~~~~~~  409 (442)
T TIGR00908       381 YRTPGGILTPGVALVLACVALVTGFYVDP  409 (442)
T ss_pred             ccCCCcchHHHHHHHHHHHHHHHHHHcCh
Confidence            99875  5556665555555555544455

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=99.25  E-value=3.6e-11  Score=114.06  Aligned_cols=74  Identities=23%  Similarity=0.232  Sum_probs=65.9

Q ss_pred             CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q psy16475          1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQ   74 (299)
Q Consensus         1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~   74 (299)
                      ++|+|||||.+|++|+|+|+|+++|++++++..+++.++....+.+.+.+..+.+....+.+...+...+|++.
T Consensus       339 il~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~  412 (557)
T TIGR00906       339 VIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQP  412 (557)
T ss_pred             HHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            36899999999999999999999999999999999888777778888889888888889999888998888543

>PRK10655 potE putrescine transporter; Provisional

Probab=99.20  E-value=4.6e-11  Score=110.60  Aligned_cols=122  Identities=11%  Similarity=0.191  Sum_probs=88.9

Q ss_pred             eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh-------cChHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q psy16475          2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT-------SDVFLLITYSSFVESAFIMISVCGILYLRYTQ   74 (299)
Q Consensus         2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~-------~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~   74 (299)
                      +|+|||||.+|++|+|+| |+++|+++++++.+++.++...       ++++.+.+..+......|.+...+...+|+++
T Consensus       299 ~~~~a~dg~lP~~~~~v~-~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~  377 (438)
T PRK10655        299 FKSSADEGYFPKIFSRVT-KVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVA  377 (438)
T ss_pred             HHHHhcCCchhHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            588999999999999999 7899999999988876654432       23566777778888889999999999999998


Q ss_pred             CCCCCCceehhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhccceeeee
Q psy16475         75 PDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIG  127 (299)
Q Consensus        75 ~E~~~p~kiP~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~  127 (299)
                      ++.++|+|.|..++....+.+.+.+   +..+......+......|.++|...
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~y~~~  427 (438)
T PRK10655        378 NVPPSKAKVANFIAFVGALYSFYAL---YSSGEEAMLYGSIVTFLGWTLYGLI  427 (438)
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            8878888866555554444443221   2222234455666777888877543

>KOG2082|consensus

Probab=99.11  E-value=1.1e-09  Score=102.03  Aligned_cols=223  Identities=14%  Similarity=0.079  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh-cc-hHHHHH--HHHHHHhccceeeeeeeecccC
Q psy16475         60 IMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL-EA-PREVGM--AVLITLSGVPVYLIGVKWRDKP  134 (299)
Q Consensus        60 ~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~-~~-~~~~~~--~~~~~~~g~~~~~~~~~~~~~~  134 (299)
                      ++=+..|...=..++++.|||+| +|.......+..+.+++..... .. .+....  -.+....|-.+-.. ..|-...
T Consensus       419 fFPsVTGImaGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~-laWPsPw  497 (1075)
T KOG2082|consen  419 FFPSVTGIMAGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVAT-LAWPSPW  497 (1075)
T ss_pred             hccccceeeecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEE-ecCCCce
Confidence            34466677777788999999999 9984433333333333332221 10 010000  01111222211000 0111110


Q ss_pred             -----ccc--ccccchhhhhhhhhhhccccccCccc--hhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Q psy16475        135 -----EAF--TRSFNALTYFVQKLMCFVGARYGHFP--AMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSF  205 (299)
Q Consensus       135 -----~~~--~~~~~~~~~~~sR~~~~~~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~  205 (299)
                           .++  .+...-++++++|++. +.|||+.+|  +-|+|.+ +++-|..|++++.+|+-+-+++++++.+.-+.++
T Consensus       498 Vi~IGsFlST~GAgLQsLtgAPRLLQ-AIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gILigslD~iApilsm  575 (1075)
T KOG2082|consen  498 VIVIGSFLSTCGAGLQSLTGAPRLLQ-AIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECGILIGSLDLIAPILSM  575 (1075)
T ss_pred             eeehhHHHHHhHHHHhhhcCcHHHHH-HHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhhheeechhHHHHHHHH
Confidence                 111  1222334788899999 999999999  8999976 8899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh-hccCCCCCCCccchhH-HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheeeeeeeecC
Q psy16475        206 VESAFIMISVCGILYL-RYTQPDMHRPIKVSLW-VPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRD  283 (299)
Q Consensus       206 ~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (299)
                      ..+.+|....++-... --|.|..+..||...| +..++...|+.+.+...+      ...++..++..++|-|...|..
T Consensus       576 FFLMCY~fVNLaCavqtLLrtPnWRPRfkyyHW~LSflG~sLC~~iMF~~SW------yyAlvAm~~a~~IYKYiEykGA  649 (1075)
T KOG2082|consen  576 FFLMCYLFVNLACAVQTLLRTPNWRPRFKYYHWSLSFLGASLCLAIMFISSW------YYALVAMLIAGVIYKYIEYKGA  649 (1075)
T ss_pred             HHHHHHHHHhHHHHHHHHhcCCCCCccchhhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhccc
Confidence            9999999886663322 2234543334766555 788888888877765532      2333334445556776665655


Q ss_pred             Cchhhhhc
Q psy16475        284 KPEAFTRS  291 (299)
Q Consensus       284 ~~~~~~~~  291 (299)
                      ++..=|.+
T Consensus       650 eKEWGDGi  657 (1075)
T KOG2082|consen  650 EKEWGDGI  657 (1075)
T ss_pred             cchhccch
Confidence            55443433

>PRK10836 lysine transporter; Provisional

Probab=99.10  E-value=3.4e-10  Score=106.22  Aligned_cols=124  Identities=17%  Similarity=0.216  Sum_probs=83.2

Q ss_pred             CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhcC------hHHHHHHhhHHHHHHHHHHHHHHHHHHhc-
Q psy16475          1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSD------VFLLITYSSFVESAFIMISVCGILYLRYT-   73 (299)
Q Consensus         1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~------~~~l~~~~~~~~~~~~~~~~~g~~~~~~~-   73 (299)
                      ++|+|||||.+|++|+|+| |+++|++|++++.+++.+..+.+.      ++.+.+..+......|.....+....|++ 
T Consensus       322 ~l~a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~l~~R~~~  400 (489)
T PRK10836        322 MLYTLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGY  400 (489)
T ss_pred             HHHHHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999 789999999999988876655321      23455666667777788888888888885 


Q ss_pred             ---CCCCC-CCceehh--HHHHHHHHHHHHHHHHHhhc---chHHHHHHHHHHHhccceee
Q psy16475         74 ---QPDMH-RPIKVSL--WVPISFVLICVFLVVTPILE---APREVGMAVLITLSGVPVYL  125 (299)
Q Consensus        74 ---~~E~~-~p~kiP~--~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~g~~~~~  125 (299)
                         .+|.+ +|+|.|.  ..+...++.+.+.+......   ++.....+......|+|+|.
T Consensus       401 ~~~~~~~~~~p~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  461 (489)
T PRK10836        401 VLQGHDLNDLPYRSGFFPLGPIFAFVLCLIITLGQNYEAFLKDTIDWGGVAATYIGIPLFL  461 (489)
T ss_pred             HhcCCCcCCCCCcCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Confidence               46665 7999876  55555555555544433222   11112233444456666543

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=99.09  E-value=3.2e-10  Score=105.84  Aligned_cols=120  Identities=15%  Similarity=0.140  Sum_probs=80.9

Q ss_pred             eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh-----cChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCC-
Q psy16475          2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT-----SDVFLLITYSSFVESAFIMISVCGILYLRYTQP-   75 (299)
Q Consensus         2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~-----~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-   75 (299)
                      +|+|||||.+||+|+|+| |+|+|.++++++.+++.+....     +.++.+.+..+......|.++..+..++|++.+ 
T Consensus       305 ~~a~ardg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~  383 (468)
T TIGR03810       305 PLLMAKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQ  383 (468)
T ss_pred             HHHHHhCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            689999999999999999 7899999999988776554432     235667777777888889999888888887653 


Q ss_pred             CCCCCceehhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhccceeeee
Q psy16475         76 DMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIG  127 (299)
Q Consensus        76 E~~~p~kiP~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~  127 (299)
                      |.++++|  ..+..   ....+.+...+...+.....+......|.++|+..
T Consensus       384 ~~~~~~~--~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~  430 (468)
T TIGR03810       384 ERGRRKQ--LLIGL---VALLYAVWLIYAAGLKYLLLSAILYAPGIYFYARA  430 (468)
T ss_pred             ccchhhh--HHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222  12222   22222222333344556666777778888877543

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=99.05  E-value=1.1e-09  Score=101.58  Aligned_cols=124  Identities=15%  Similarity=0.207  Sum_probs=83.1

Q ss_pred             CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh------cChHHHHHHhhHHHHHHHHHHHHHHHHHHhc-
Q psy16475          1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT------SDVFLLITYSSFVESAFIMISVCGILYLRYT-   73 (299)
Q Consensus         1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~------~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~-   73 (299)
                      ++|+|||||.+|++|+|+| |+|+|++|++++.+++.+....      +.++.+.+..+...+..|.....+....|++ 
T Consensus       291 ~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~  369 (446)
T PRK10197        291 MLYSLSRRGDAPAVMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKIL  369 (446)
T ss_pred             HHHHHHcCCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999 8899999999998776654432      1356777788888888999999999998885 


Q ss_pred             -CCCCCCCceehh--HHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHhccceee
Q psy16475         74 -QPDMHRPIKVSL--WVPISFVLICVFLVVTPILE-APREVGMAVLITLSGVPVYL  125 (299)
Q Consensus        74 -~~E~~~p~kiP~--~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~g~~~~~  125 (299)
                       .++.+.|+|.|.  ..+...+....+.+...... ++.....+......+...|.
T Consensus       370 ~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (446)
T PRK10197        370 RAEGSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPAQQLEVISTGLLAIGIICTV  425 (446)
T ss_pred             HhcCCCCCCcCCCcchHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHhhh
Confidence             334456777664  34444444443333332222 22222334445556655544

>PRK11387 S-methylmethionine transporter; Provisional

Probab=99.04  E-value=8.4e-10  Score=103.09  Aligned_cols=128  Identities=15%  Similarity=0.210  Sum_probs=82.1

Q ss_pred             CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhc--C----hHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q psy16475          1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTS--D----VFLLITYSSFVESAFIMISVCGILYLRYTQ   74 (299)
Q Consensus         1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~--~----~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~   74 (299)
                      ++|+|||||.+|++|+|+| |+++|++++++..+.+.+.+...  .    ++.+.+..+......|.+...+....|++.
T Consensus       315 ~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~~~  393 (471)
T PRK11387        315 MLWSLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFRRRH  393 (471)
T ss_pred             HHHHHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999 78999999998876555443321  1    233455666666677888888888888776


Q ss_pred             CC-----CCCCceehh--HHHHHHHHHHHHHHHHHhhcchH--HHHHHHHHHHhccceeeeeee
Q psy16475         75 PD-----MHRPIKVSL--WVPISFVLICVFLVVTPILEAPR--EVGMAVLITLSGVPVYLIGVK  129 (299)
Q Consensus        75 ~E-----~~~p~kiP~--~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~  129 (299)
                      ++     .++|+|.|.  ..+...++.+.+.+......++.  ....+......+.+.|..+++
T Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (471)
T PRK11387        394 LRDGKALSELAYRAPWYPLTPILGFVLCLLACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQR  457 (471)
T ss_pred             HhcCCCCCCCCccCCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            43     346888776  45555555554444333222221  133455555667776655433

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=99.04  E-value=1.1e-09  Score=102.54  Aligned_cols=84  Identities=14%  Similarity=0.144  Sum_probs=64.6

Q ss_pred             CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh-c-----ChHHHHHHhhHHHHHHHHHHHHHHHHHHhc-
Q psy16475          1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT-S-----DVFLLITYSSFVESAFIMISVCGILYLRYT-   73 (299)
Q Consensus         1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~-~-----~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~-   73 (299)
                      ++|+|||||.+|++|+|+| |+++|++|++++.+++.+.... +     .++.+.+..+......|.+...+....|++ 
T Consensus       315 ~l~a~ardg~lP~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~i~~r~~~  393 (478)
T TIGR00913       315 TLYALAHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMCICLSHIRFRKAM  393 (478)
T ss_pred             HHHHHHhCCcccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999 7899999999998887654332 1     245566676777778888888888888765 


Q ss_pred             ----CCCCCCCceehh
Q psy16475         74 ----QPDMHRPIKVSL   85 (299)
Q Consensus        74 ----~~E~~~p~kiP~   85 (299)
                          .++.++|+|.|.
T Consensus       394 ~~~~~~~~~~p~~~~~  409 (478)
T TIGR00913       394 KAQGRSLDELPYKSQT  409 (478)
T ss_pred             HhcCCCcccCCccCCC
Confidence                234577888766

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=99.03  E-value=7.8e-10  Score=103.36  Aligned_cols=120  Identities=18%  Similarity=0.253  Sum_probs=81.8

Q ss_pred             eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHH-----hcChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCC
Q psy16475          2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLF-----TSDVFLLITYSSFVESAFIMISVCGILYLRYTQPD   76 (299)
Q Consensus         2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~-----~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~E   76 (299)
                      +|+|||||.+|++|+|+| ++++|++++++..+++.+...     .++++.+.+..+......|.+...+....|++. +
T Consensus       309 ~~amardg~lP~~~~~v~-~~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~-~  386 (473)
T TIGR00905       309 PFSAAKDGLFPKIFGRVN-KNGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVG-T  386 (473)
T ss_pred             HHHHHhCCChhHHHHhhC-ccCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence            689999999999999999 569999999999887764443     235677788888888999999999998888765 2


Q ss_pred             CCC-CceehhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhccceeee
Q psy16475         77 MHR-PIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLI  126 (299)
Q Consensus        77 ~~~-p~kiP~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~  126 (299)
                      .++ +++.+..++......+.+.   .+..++.+...+......|.++|..
T Consensus       387 ~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~y~~  434 (473)
T TIGR00905       387 YPKIKNRKALIVGVIACVYSIWL---LYAAGLKYLLLGFILYAPGIIFYGR  434 (473)
T ss_pred             ccccccchHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            222 2222223444443333332   2233445555666666778776643

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>KOG1288|consensus

Probab=99.01  E-value=1.6e-09  Score=100.26  Aligned_cols=178  Identities=13%  Similarity=0.105  Sum_probs=121.6

Q ss_pred             HHHHHHHHhcCCCCCCCce-ehh--HHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHhccceeeeeeeecccC-----
Q psy16475         64 VCGILYLRYTQPDMHRPIK-VSL--WVPISFVLICVFLVVTPI-LEAPREVGMAVLITLSGVPVYLIGVKWRDKP-----  134 (299)
Q Consensus        64 ~~g~~~~~~~~~E~~~p~k-iP~--~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----  134 (299)
                      ..|...=+.+++|.|+|.| +|+  ...+.+..++++++.... +..|...+...-         .+.......+     
T Consensus       307 ~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy---------~v~~~isl~p~fi~i  377 (945)
T KOG1288|consen  307 TTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDY---------DVMMHISLHPPFILI  377 (945)
T ss_pred             chhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhch---------hheeeccccchHHHH
Confidence            3677777788999999999 999  334444444444433332 233333222110         0000111111     


Q ss_pred             ---cccccccchhhhhhhhhhhccccccCccc--hhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy16475        135 ---EAFTRSFNALTYFVQKLMCFVGARYGHFP--AMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESA  209 (299)
Q Consensus       135 ---~~~~~~~~~~~~~~sR~~~~~~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~  209 (299)
                         .....+..+.+.+++|++. +.|||..+|  -.|+|...+.+-|+.|+.++-.+.-+..+.++++.+.++.+...++
T Consensus       378 Gi~sttlfss~s~liGasrvL~-alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLl  456 (945)
T KOG1288|consen  378 GILSTTLFSSMSGLIGASRVLE-ALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLL  456 (945)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHH-HHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence               1111233456889999998 999999999  5788988899999999999999999888889999999999999999


Q ss_pred             HHHHHHHHHHhhhccC-CCCCCCccchhH-HHHHHHHHHHHHHH
Q psy16475        210 FIMISVCGILYLRYTQ-PDMHRPIKVSLW-VPISFVLICVFLVV  251 (299)
Q Consensus       210 ~~~~~~~~~~~~r~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~  251 (299)
                      +|..+.++.+.++... |+-+..||...+ ..+++.+.++.+.+
T Consensus       457 ty~~vNLacl~LeissAPNFRPtFkyF~w~TclvG~l~s~~mMf  500 (945)
T KOG1288|consen  457 TYGAVNLACLLLEISSAPNFRPTFKYFNWHTCLVGVLLSLGMMF  500 (945)
T ss_pred             HHHHHHHHHHHhhhccCCCCCchhhhhhHHHHHHHHHHHHhhhh
Confidence            9999999988888764 433223665544 67777766665544

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=98.98  E-value=1.6e-09  Score=100.45  Aligned_cols=121  Identities=17%  Similarity=0.247  Sum_probs=83.1

Q ss_pred             eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh---c----ChHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q psy16475          2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT---S----DVFLLITYSSFVESAFIMISVCGILYLRYTQ   74 (299)
Q Consensus         2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~---~----~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~   74 (299)
                      .|+|||||.+||+|+|+| |+++|+++++++.+++.+..+.   .    .++.+.+..+......|.+...+....|+++
T Consensus       301 ~~a~ardg~lP~~~~~v~-~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~  379 (445)
T PRK10644        301 AKAAADDGLFPPIFARVN-KAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGH  379 (445)
T ss_pred             HHHHHhCCCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            578999999999999999 6899999999999887765533   1    2555667777778888999999999998887


Q ss_pred             CCCCCCceehhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhccceeeeee
Q psy16475         75 PDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGV  128 (299)
Q Consensus        75 ~E~~~p~kiP~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  128 (299)
                      ++.++|.. | ..+...++.+.+.+.   ..++.+...+......+.++|+..+
T Consensus       380 ~~~~~p~~-~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~y~~~~  428 (445)
T PRK10644        380 FGKARPAY-L-AVTLIAFVYCIWAVV---GSGAKEVMWSFVTLMVITAFYALNY  428 (445)
T ss_pred             Ccccccch-h-HHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            65555532 2 344444444444432   2334444555555667777765443

>PRK15049 L-asparagine permease; Provisional

Probab=98.96  E-value=4.5e-09  Score=98.74  Aligned_cols=106  Identities=11%  Similarity=0.120  Sum_probs=74.7

Q ss_pred             CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHH---h---cChHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q psy16475          1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLF---T---SDVFLLITYSSFVESAFIMISVCGILYLRYTQ   74 (299)
Q Consensus         1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~---~---~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~   74 (299)
                      ++|+|||||.+|++|+|+| |+++|++|++++.+++.+...   .   +.++.+.+..+......|.+...+....|++.
T Consensus       329 ~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~~  407 (499)
T PRK15049        329 ILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAI  407 (499)
T ss_pred             HHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4689999999999999999 889999999988877554322   1   12566778888888889999999998888763


Q ss_pred             C---CCCCCceehh--HHHHHHHHHHHHHHHHHhhcch
Q psy16475         75 P---DMHRPIKVSL--WVPISFVLICVFLVVTPILEAP  107 (299)
Q Consensus        75 ~---E~~~p~kiP~--~~~~~~~~~~~~~i~~~~~~~~  107 (299)
                      +   +.++|+|.|.  ...+..++...+.+.......|
T Consensus       408 ~~~~~~~~pf~~~~~p~~~~~~l~~~~~~~~~~~~~~~  445 (499)
T PRK15049        408 KEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYP  445 (499)
T ss_pred             hhcCCCCCCCcccCccHHHHHHHHHHHHHHHHHHHcCc
Confidence            3   3356899876  3444444444433333333334

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=98.92  E-value=3.7e-09  Score=99.50  Aligned_cols=84  Identities=15%  Similarity=0.291  Sum_probs=67.2

Q ss_pred             CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh----cC-----hHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy16475          1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT----SD-----VFLLITYSSFVESAFIMISVCGILYLR   71 (299)
Q Consensus         1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~----~~-----~~~l~~~~~~~~~~~~~~~~~g~~~~~   71 (299)
                      ++|++||||.+|++|+|+| |+|+|.++++++++++.++...    ++     +..+.+..+......|.+.+.+...+|
T Consensus       308 ~l~~~ardg~lP~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr  386 (507)
T TIGR00910       308 GMFAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLI  386 (507)
T ss_pred             HHHHhcccCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999 8899999999998877654321    11     122334556677888999999999999


Q ss_pred             hcCCCCCCCceehh
Q psy16475         72 YTQPDMHRPIKVSL   85 (299)
Q Consensus        72 ~~~~E~~~p~kiP~   85 (299)
                      ++.+|.+||+|+|.
T Consensus       387 ~k~p~~~rpf~~pg  400 (507)
T TIGR00910       387 LKHPDLKRTFNIPG  400 (507)
T ss_pred             HhcCCCCCCeEecC
Confidence            99999999999875

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=98.92  E-value=4.4e-09  Score=97.82  Aligned_cols=81  Identities=15%  Similarity=0.213  Sum_probs=62.8

Q ss_pred             CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh--cC----hHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q psy16475          1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT--SD----VFLLITYSSFVESAFIMISVCGILYLRYTQ   74 (299)
Q Consensus         1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~--~~----~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~   74 (299)
                      ++|+|||||.+||+|+|+| |+++|++|+++..+++.+....  .+    ++.+.+..+......|.....+....|++.
T Consensus       311 ~~~a~ardg~lP~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~~  389 (452)
T TIGR01773       311 MLYSLAERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKKL  389 (452)
T ss_pred             HHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999 7899999999998887765443  12    234556666667788888888888888887


Q ss_pred             CCCCCCce
Q psy16475         75 PDMHRPIK   82 (299)
Q Consensus        75 ~E~~~p~k   82 (299)
                      ++.++|++
T Consensus       390 ~~~~~~~~  397 (452)
T TIGR01773       390 KANGEAIK  397 (452)
T ss_pred             HhcCCCCC
Confidence            76666644

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=98.91  E-value=5e-09  Score=97.97  Aligned_cols=83  Identities=18%  Similarity=0.314  Sum_probs=66.2

Q ss_pred             eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHH----hcC----hHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Q psy16475          2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLF----TSD----VFLLITYSSFVESAFIMISVCGILYLRYT   73 (299)
Q Consensus         2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~----~~~----~~~l~~~~~~~~~~~~~~~~~g~~~~~~~   73 (299)
                      +|+|||||.+||+|+|+| |+|+|+++++++.++..++..    ..+    ++.+.+..+......|.+...+...+|++
T Consensus       307 ~~a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~  385 (474)
T TIGR03813       307 MLAVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYS  385 (474)
T ss_pred             HHHHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            689999999999999999 899999999988876443221    122    34555666666777888999999999988


Q ss_pred             CCCCCCCceehh
Q psy16475         74 QPDMHRPIKVSL   85 (299)
Q Consensus        74 ~~E~~~p~kiP~   85 (299)
                      .+|.++|+|+|.
T Consensus       386 ~~~~~rpf~~p~  397 (474)
T TIGR03813       386 QPDRPRPYRIPG  397 (474)
T ss_pred             CCCCCCCeEecC
Confidence            889999999875

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK10249 phenylalanine transporter; Provisional

Probab=98.88  E-value=1.3e-08  Score=94.75  Aligned_cols=84  Identities=17%  Similarity=0.155  Sum_probs=65.5

Q ss_pred             CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh---c---ChHHHHHHhhHHHHHHHHHHHHHHHHHHh--
Q psy16475          1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT---S---DVFLLITYSSFVESAFIMISVCGILYLRY--   72 (299)
Q Consensus         1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~---~---~~~~l~~~~~~~~~~~~~~~~~g~~~~~~--   72 (299)
                      ++|+|||||.+|++|+|+| |+|+|++|++++.+++.+....   .   .++.+.+..+......|.+...+....|+  
T Consensus       318 ~l~a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~  396 (458)
T PRK10249        318 MLFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAM  396 (458)
T ss_pred             HHHHHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999 7899999999998887765432   1   24556667667777888888888888886  


Q ss_pred             cCCCCCCCceehh
Q psy16475         73 TQPDMHRPIKVSL   85 (299)
Q Consensus        73 ~~~E~~~p~kiP~   85 (299)
                      ++++.++|+|.|.
T Consensus       397 ~~~~~~~p~~~~~  409 (458)
T PRK10249        397 RRQGRETQFKALL  409 (458)
T ss_pred             HhcCCCCCccCCC
Confidence            4455678888765

>PRK10746 putative transport protein YifK; Provisional

Probab=98.87  E-value=9e-09  Score=95.85  Aligned_cols=84  Identities=12%  Similarity=0.192  Sum_probs=62.3

Q ss_pred             CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHH----HhcC----hHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q psy16475          1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFML----FTSD----VFLLITYSSFVESAFIMISVCGILYLRY   72 (299)
Q Consensus         1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~----~~~~----~~~l~~~~~~~~~~~~~~~~~g~~~~~~   72 (299)
                      ++|+|||||++|++|+|+| |+|+|+++++++.+...+..    ...+    ++.+.+..+......|.....+....|+
T Consensus       309 ~l~~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~  387 (461)
T PRK10746        309 MLYALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRR  387 (461)
T ss_pred             HHHHHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999 88999999988764433211    1111    3456667777777888888888888998


Q ss_pred             cCCC--CCCCceehh
Q psy16475         73 TQPD--MHRPIKVSL   85 (299)
Q Consensus        73 ~~~E--~~~p~kiP~   85 (299)
                      +.++  .++|+|.|.
T Consensus       388 ~~~~~~~~~~~~~~~  402 (461)
T PRK10746        388 AHKAAIASHPFRSIL  402 (461)
T ss_pred             hccccccCCCCcCCC
Confidence            8775  356888554

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=98.84  E-value=1.1e-08  Score=95.54  Aligned_cols=83  Identities=25%  Similarity=0.309  Sum_probs=63.1

Q ss_pred             eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHH---HH-hcC----hHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Q psy16475          2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFM---LF-TSD----VFLLITYSSFVESAFIMISVCGILYLRYT   73 (299)
Q Consensus         2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~---~~-~~~----~~~l~~~~~~~~~~~~~~~~~g~~~~~~~   73 (299)
                      +|+|||||.+|++|+|+| |+|+|++++++..++..+.   .. ..+    ++.+.+..+......|.....+....|++
T Consensus       321 l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~  399 (469)
T PRK11049        321 LFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQ  399 (469)
T ss_pred             HHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            689999999999999999 6699999999887654431   11 122    34445555666677888889999999999


Q ss_pred             CCCCC--CCceehh
Q psy16475         74 QPDMH--RPIKVSL   85 (299)
Q Consensus        74 ~~E~~--~p~kiP~   85 (299)
                      .+|.+  +|+|.|.
T Consensus       400 ~p~~~~~~pf~~p~  413 (469)
T PRK11049        400 RPHLHEKSIYKMPL  413 (469)
T ss_pred             hhhcCCCCCccCcC
Confidence            88876  4788765

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=98.84  E-value=9.8e-09  Score=96.26  Aligned_cols=84  Identities=11%  Similarity=0.104  Sum_probs=62.5

Q ss_pred             CeeeccccCCch--hhhhhhcCCCCCchHHHHHHHHHHHHHHHh--c---ChHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Q psy16475          1 MCFVGARYDHFP--VMLSHINLSRFTPTPSLVFLNILSLFMLFT--S---DVFLLITYSSFVESAFIMISVCGILYLRYT   73 (299)
Q Consensus         1 ~~~a~a~~g~lP--~~~~~~~~~~~~P~~ail~~~vi~~i~~~~--~---~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~   73 (299)
                      ++|+|||||.+|  ++|+|+||++|+|+++++++.+++.+....  +   .++.+.+..+......|.+...+....|+ 
T Consensus       330 ~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~~~-  408 (482)
T TIGR00907       330 MIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYVIPIICKLAKGR-  408 (482)
T ss_pred             HHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            368999999999  999999988899999999998887664433  1   35566677777777778877765544333 


Q ss_pred             CCCCCCCceehh
Q psy16475         74 QPDMHRPIKVSL   85 (299)
Q Consensus        74 ~~E~~~p~kiP~   85 (299)
                      .++.++|+|+++
T Consensus       409 ~~~~~~~f~lg~  420 (482)
T TIGR00907       409 NTIAPGPFWLGK  420 (482)
T ss_pred             CCCCCCCCcCCc
Confidence            245677888744

>PRK10580 proY putative proline-specific permease; Provisional

Probab=98.82  E-value=2.1e-08  Score=93.35  Aligned_cols=98  Identities=15%  Similarity=0.216  Sum_probs=67.3

Q ss_pred             CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh---c---ChHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q psy16475          1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT---S---DVFLLITYSSFVESAFIMISVCGILYLRYTQ   74 (299)
Q Consensus         1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~---~---~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~   74 (299)
                      ++|+|||||.+|++|+|+| |+|+|++|++++.+++.+....   .   .++.+.+..+......|.+...+....|++.
T Consensus       308 ~~~~~ardg~lP~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~~~  386 (457)
T PRK10580        308 MLHGMAEQGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRL  386 (457)
T ss_pred             HHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999 6899999999887655543322   1   1345666667777778888888888888774


Q ss_pred             --CCCC-CCceehh--HHHHHHHHHHHHHH
Q psy16475         75 --PDMH-RPIKVSL--WVPISFVLICVFLV   99 (299)
Q Consensus        75 --~E~~-~p~kiP~--~~~~~~~~~~~~~i   99 (299)
                        ++.+ +|+|.|.  ......+....+.+
T Consensus       387 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  416 (457)
T PRK10580        387 PPEEVKALKFKVPGGVATTIGGLIFLVFII  416 (457)
T ss_pred             HhcCCCCCCcccCCccHHHHHHHHHHHHHH
Confidence              2333 3677765  34444444444333

>TIGR00930 2a30 K-Cl cotransporter

Probab=98.75  E-value=6.6e-08  Score=96.63  Aligned_cols=98  Identities=7%  Similarity=0.073  Sum_probs=76.4

Q ss_pred             CeeeccccCCch--hhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCC-CC
Q psy16475          1 MCFVGARYDHFP--VMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQP-DM   77 (299)
Q Consensus         1 ~~~a~a~~g~lP--~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-E~   77 (299)
                      ++|+|||||.+|  ++|+|+|+|+++|++|++++.+++.++++.++.+.+.+..+......|.+...+....+...+ +.
T Consensus       412 vl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~lis~~fLl~Y~lvnla~~~l~~~~~p~~  491 (953)
T TIGR00930       412 LFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPIISNFFLASYALINFSCFHASLLRSPGW  491 (953)
T ss_pred             HHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence            368999999999  899999999999999999999999998888889999888888888899998888888776553 33


Q ss_pred             CCCcee-hhHHHHHHHHHHHHH
Q psy16475         78 HRPIKV-SLWVPISFVLICVFL   98 (299)
Q Consensus        78 ~~p~ki-P~~~~~~~~~~~~~~   98 (299)
                      +..+|. ...+++++.+.+.++
T Consensus       492 RP~fk~~~~~~sllG~l~c~~l  513 (953)
T TIGR00930       492 RPRFKYYHWWLSLLGASLCCAI  513 (953)
T ss_pred             CCccccchHHHHHHHHHHHHHH
Confidence            333452 224555554444443

>PRK10238 aromatic amino acid transporter; Provisional

Probab=98.75  E-value=6.4e-08  Score=90.10  Aligned_cols=75  Identities=15%  Similarity=0.169  Sum_probs=60.4

Q ss_pred             CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh------cChHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q psy16475          1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT------SDVFLLITYSSFVESAFIMISVCGILYLRYTQ   74 (299)
Q Consensus         1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~------~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~   74 (299)
                      ++|+|||||.+|++|+|+| |+|+|++|++++.+++.+..+.      +.++.+.+..+......|.+...+....|++.
T Consensus       309 ~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~  387 (456)
T PRK10238        309 MLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAK  387 (456)
T ss_pred             HHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999 7799999999999887765443      12455667777778888999999999888876


Q ss_pred             CC
Q psy16475         75 PD   76 (299)
Q Consensus        75 ~E   76 (299)
                      ++
T Consensus       388 ~~  389 (456)
T PRK10238        388 QE  389 (456)
T ss_pred             Hh
Confidence            54

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=98.68  E-value=1e-07  Score=88.76  Aligned_cols=84  Identities=25%  Similarity=0.433  Sum_probs=70.5

Q ss_pred             eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHH-HHHHhc----ChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCC
Q psy16475          2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSL-FMLFTS----DVFLLITYSSFVESAFIMISVCGILYLRYTQPD   76 (299)
Q Consensus         2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~-i~~~~~----~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~E   76 (299)
                      +|+|||||.+|++|+|+|+++++|.+++++..+++. +.....    .++.+.+..+......|.++..+....|++.++
T Consensus       313 ~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~  392 (466)
T COG0531         313 LYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPD  392 (466)
T ss_pred             HHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            589999999999999999998999999999999988 333322    246777888888889999999999999999877


Q ss_pred             CCCCceehh
Q psy16475         77 MHRPIKVSL   85 (299)
Q Consensus        77 ~~~p~kiP~   85 (299)
                      .++|+|.|+
T Consensus       393 ~~~~~~~~~  401 (466)
T COG0531         393 LKRPFRLPL  401 (466)
T ss_pred             CCCcccccc
Confidence            778777555

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=98.67  E-value=7.6e-08  Score=89.07  Aligned_cols=68  Identities=10%  Similarity=0.129  Sum_probs=50.5

Q ss_pred             eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHH-----h-------cChHHHHHHhhHHHHHHHHHHHHHHHH
Q psy16475          2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLF-----T-------SDVFLLITYSSFVESAFIMISVCGILY   69 (299)
Q Consensus         2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~-----~-------~~~~~l~~~~~~~~~~~~~~~~~g~~~   69 (299)
                      .++|||||.+||+|+|+| |+|+|.++++++.++..++..     .       +.++.+.+..+......|.+...+...
T Consensus       297 ~~~~ardG~lP~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir  375 (435)
T PRK10435        297 GVRAANDGNFPKVYGEVD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIR  375 (435)
T ss_pred             HHHHHhCCCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357999999999999999 899999999988765544321     1       124556677777777788888877653


Q ss_pred             H
Q psy16475         70 L   70 (299)
Q Consensus        70 ~   70 (299)
                      .
T Consensus       376 ~  376 (435)
T PRK10435        376 F  376 (435)
T ss_pred             h
Confidence            3

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=98.61  E-value=1.9e-07  Score=87.86  Aligned_cols=81  Identities=12%  Similarity=0.223  Sum_probs=63.8

Q ss_pred             eeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh---cC------hHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Q psy16475          3 FVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT---SD------VFLLITYSSFVESAFIMISVCGILYLRYT   73 (299)
Q Consensus         3 ~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~---~~------~~~l~~~~~~~~~~~~~~~~~g~~~~~~~   73 (299)
                      ++++|||++||+|+|+| |+|+|+++++++.+++.+....   ++      ++.+.+..+......|.+.+.+....|+ 
T Consensus       344 ~~~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~l~~~~~li~y~~~~~a~i~~r~-  421 (496)
T PRK15238        344 IEGTPKALWPKKMTKLN-KNGMPANAMWLQCIIVSVFILLVSFGGDAASAFFNILTLMANVSMTLPYLFLAGAFPFFKK-  421 (496)
T ss_pred             HhhCccCcccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence            46678999999999999 9999999999988776654322   21      4557778888888899999999988876 


Q ss_pred             CCCCCCCceehh
Q psy16475         74 QPDMHRPIKVSL   85 (299)
Q Consensus        74 ~~E~~~p~kiP~   85 (299)
                      ++|.++|++.|+
T Consensus       422 ~~~~~r~~~~~~  433 (496)
T PRK15238        422 KKDIDRPFVVFK  433 (496)
T ss_pred             ccCCCCCceecC
Confidence            577788887543

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=98.57  E-value=6.1e-07  Score=80.75  Aligned_cols=104  Identities=15%  Similarity=0.229  Sum_probs=73.3

Q ss_pred             CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhc------ChHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q psy16475          1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTS------DVFLLITYSSFVESAFIMISVCGILYLRYTQ   74 (299)
Q Consensus         1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~------~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~   74 (299)
                      |+|.+|+||+.||.|+|+| |+|+|+++++++.+...+....+      .++.+.+..+......+.+...+..+.|+.+
T Consensus       312 mL~~la~~g~APk~~~kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~~  390 (462)
T COG1113         312 MLYSLAKQGDAPKAFAKLS-KRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRKAK  390 (462)
T ss_pred             HHHHHhhcCcccHhHhhcc-ccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            6789999999999999999 99999999999987666555432      2556667777777777788888888888854


Q ss_pred             CC-CCC-Cceehh--HHHHHHHHHHHHHHHHHhhc
Q psy16475         75 PD-MHR-PIKVSL--WVPISFVLICVFLVVTPILE  105 (299)
Q Consensus        75 ~E-~~~-p~kiP~--~~~~~~~~~~~~~i~~~~~~  105 (299)
                      +| .|+ ++|+|.  ....+.+......+..+...
T Consensus       391 ~~~~~~~~fkm~~~p~~~~l~l~fl~~vlv~m~~~  425 (462)
T COG1113         391 PAEGKKLKFKMPLYPFTNYLTLAFLAFVLVLMLFD  425 (462)
T ss_pred             hhcccCcccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            43 333 467776  44444444444444444433

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=98.55  E-value=1.2e-07  Score=87.43  Aligned_cols=80  Identities=24%  Similarity=0.426  Sum_probs=65.8

Q ss_pred             eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHH-h-----cChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCC
Q psy16475          2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLF-T-----SDVFLLITYSSFVESAFIMISVCGILYLRYTQP   75 (299)
Q Consensus         2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~-~-----~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~   75 (299)
                      +++|||||.+|++|+|+| |+|+|..++++..+++.+... .     ++.+.+.+..+......+.+...+....|++.+
T Consensus       299 l~~~a~d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (426)
T PF13520_consen  299 LYAMARDGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRP  377 (426)
T ss_dssp             HHHHHHTTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSC
T ss_pred             ccccccccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            578999999999999999 999999999999999865542 2     235677778788888889999999999999987


Q ss_pred             CCCC-Cce
Q psy16475         76 DMHR-PIK   82 (299)
Q Consensus        76 E~~~-p~k   82 (299)
                      |.++ |++
T Consensus       378 ~~~r~~~~  385 (426)
T PF13520_consen  378 DLKRIPYR  385 (426)
T ss_dssp             SSGH-HHH
T ss_pred             CcCCCCcc
Confidence            7755 444

...

>PRK11021 putative transporter; Provisional

Probab=98.55  E-value=3.9e-07  Score=83.74  Aligned_cols=72  Identities=15%  Similarity=0.147  Sum_probs=58.5

Q ss_pred             CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHH-----hcChHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Q psy16475          1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLF-----TSDVFLLITYSSFVESAFIMISVCGILYLRYT   73 (299)
Q Consensus         1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~-----~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~   73 (299)
                      ++|+|||||.+||+|+|+| |+|+|+++++++.+++.+...     ..+++.+.+..+......|.++..+..+++++
T Consensus       286 ~l~a~ardg~lP~~~~k~~-~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~  362 (410)
T PRK11021        286 LVWSQAREGRPPSYLARLS-ARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKG  362 (410)
T ss_pred             HHHHHHccCCccHHHHhhc-cCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3689999999999999999 789999999988776665432     24677888888877788899888888887753

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=98.55  E-value=3.6e-07  Score=85.55  Aligned_cols=85  Identities=16%  Similarity=0.199  Sum_probs=61.0

Q ss_pred             CeeeccccCCch--hhhhhhcCCCCCchHHHHHHHHHHHHHHHh--cC---hHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Q psy16475          1 MCFVGARYDHFP--VMLSHINLSRFTPTPSLVFLNILSLFMLFT--SD---VFLLITYSSFVESAFIMISVCGILYLRYT   73 (299)
Q Consensus         1 ~~~a~a~~g~lP--~~~~~~~~~~~~P~~ail~~~vi~~i~~~~--~~---~~~l~~~~~~~~~~~~~~~~~g~~~~~~~   73 (299)
                      ++|+|||||.+|  ++|+|+|||+++|++++++..+++.++...  ++   ++.+.+..+......|.....+....|.+
T Consensus       323 ~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l~~~~~  402 (475)
T TIGR03428       323 LMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLLRRLR  402 (475)
T ss_pred             HHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            368999999999  489999999999999999998888765543  22   34555666666667777766666665544


Q ss_pred             C-----C-CCCCCceehh
Q psy16475         74 Q-----P-DMHRPIKVSL   85 (299)
Q Consensus        74 ~-----~-E~~~p~kiP~   85 (299)
                      .     + ..+.|++.+|
T Consensus       403 ~~~~~~~~~~~g~f~lg~  420 (475)
T TIGR03428       403 GWPRGDQTDPAGLFSLGR  420 (475)
T ss_pred             ccCCccCCCCCCCCCCch
Confidence            2     1 1345677776

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=98.55  E-value=3.7e-07  Score=83.77  Aligned_cols=98  Identities=18%  Similarity=0.284  Sum_probs=64.7

Q ss_pred             CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhc------ChHHHHHHhhHH---HHHHHHHHHHHHHHHH
Q psy16475          1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTS------DVFLLITYSSFV---ESAFIMISVCGILYLR   71 (299)
Q Consensus         1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~------~~~~l~~~~~~~---~~~~~~~~~~g~~~~~   71 (299)
                      |+|+||+||+.||+|+|+| |+|+|++|++++.+.+.+..+..      .++.+.+.++.+   .|....++..=+...-
T Consensus       351 ~L~sLA~~g~APk~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shirFR~A~  429 (541)
T COG0833         351 MLYSLAKQGKAPKIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHIRFRRAM  429 (541)
T ss_pred             HHHHHHhcCCCchHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999 88999999999999888766542      145566655544   4445555554444444


Q ss_pred             hcCCCC--CCCceehh--HHHHHHHHHHHHHH
Q psy16475         72 YTQPDM--HRPIKVSL--WVPISFVLICVFLV   99 (299)
Q Consensus        72 ~~~~E~--~~p~kiP~--~~~~~~~~~~~~~i   99 (299)
                      ++++..  +-|+|.|.  ..++..++.+.+.+
T Consensus       430 ~~QG~s~~~L~yks~~~p~g~~~~~~~~~li~  461 (541)
T COG0833         430 KAQGRSLDELPYKSPFGPYGPIYGLILCILIL  461 (541)
T ss_pred             HHcCCChhhcCccCCCccHHHHHHHHHHHHHH
Confidence            444442  23788555  44444444444333

>KOG1286|consensus

Probab=98.18  E-value=4.6e-06  Score=78.60  Aligned_cols=71  Identities=13%  Similarity=0.147  Sum_probs=59.8

Q ss_pred             eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhcC------hHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Q psy16475          2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSD------VFLLITYSSFVESAFIMISVCGILYLRYT   73 (299)
Q Consensus         2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~------~~~l~~~~~~~~~~~~~~~~~g~~~~~~~   73 (299)
                      +|+|||||++||+|+++|++ |+|+.+++++.+.+.+.....+      ++++.+..+.+....+.....+....|+.
T Consensus       347 l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R~a  423 (554)
T KOG1286|consen  347 LYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRFRYA  423 (554)
T ss_pred             HHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHeeeeec
Confidence            58999999999999999965 9999999999999988776544      38888888888888887777777777665

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=98.08  E-value=4.2e-05  Score=68.96  Aligned_cols=77  Identities=16%  Similarity=0.121  Sum_probs=64.2

Q ss_pred             chhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCCCCCCCccchhHHHH
Q psy16475        163 PAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILY--LRYTQPDMHRPIKVSLWVPI  240 (299)
Q Consensus       163 P~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~~~~~~  240 (299)
                      -+.|+|.++|  +|+.+..+...+...+....+++.+.+++....++.|-+.....+.  +||+.|+.+++||.+.....
T Consensus       293 a~~f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~~~~~~~  370 (378)
T TIGR00796       293 SEYFHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQITLIVAL  370 (378)
T ss_pred             HHHHHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeehHHHHHH
Confidence            3678888764  9999999888888777777789999999999999999998888776  88888888899999876443


Q ss_pred             H
Q psy16475        241 S  241 (299)
Q Consensus       241 ~  241 (299)
                      +
T Consensus       371 ~  371 (378)
T TIGR00796       371 L  371 (378)
T ss_pred             H
Confidence            3

transmembrane helical spanners.

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.98  E-value=8e-06  Score=76.57  Aligned_cols=73  Identities=15%  Similarity=0.195  Sum_probs=51.1

Q ss_pred             CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhcC------hHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Q psy16475          1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSD------VFLLITYSSFVESAFIMISVCGILYLRYT   73 (299)
Q Consensus         1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~------~~~l~~~~~~~~~~~~~~~~~g~~~~~~~   73 (299)
                      ++|+|||||.+|+++.+.|+|+|+|++|++++.+++.+..+..+      ++.+.+..+......+.....+....|++
T Consensus       314 ~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~r~~  392 (478)
T PF00324_consen  314 LLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIRFRKK  392 (478)
T ss_pred             eehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhhhhhh
Confidence            47999999999966666677999999999999888877665322      22334444455555566666666656555

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>KOG1289|consensus

Probab=97.81  E-value=5.2e-05  Score=69.90  Aligned_cols=52  Identities=17%  Similarity=0.234  Sum_probs=41.4

Q ss_pred             eeeccccCCch--hhhhhhcCCCCCchHHHHHHHHHHHHHHHh--cChHHHHHHhh
Q psy16475          2 CFVGARYDHFP--VMLSHINLSRFTPTPSLVFLNILSLFMLFT--SDVFLLITYSS   53 (299)
Q Consensus         2 ~~a~a~~g~lP--~~~~~~~~~~~~P~~ail~~~vi~~i~~~~--~~~~~l~~~~~   53 (299)
                      .|+.||||.+|  ++++|+||+.++|.+|+++..+++.++.+.  .+...+....+
T Consensus       366 v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs  421 (550)
T KOG1289|consen  366 VYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFS  421 (550)
T ss_pred             HhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            58999999999  999999988899999999999988876653  44444444433

>TIGR00837 araaP aromatic amino acid transport protein

Probab=97.11  E-value=0.006  Score=55.45  Aligned_cols=76  Identities=7%  Similarity=-0.100  Sum_probs=42.3

Q ss_pred             ccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh--ccH-HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccc
Q psy16475        158 RYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT--SDV-FLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKV  234 (299)
Q Consensus       158 ~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~--~~~-~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  234 (299)
                      +|+ +++.+++.|++++ |..+..++.+..+++...  ..+ ..+.........+...+..+-..+.|||+|+  .+||.
T Consensus       292 ~d~-l~~~~~~~~~~~~-~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~~~~~r~~~~~--~~~~~  367 (381)
T TIGR00837       292 FDY-LADLFKFDDSKKG-RFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALLAWKARKKFPN--AGYRV  367 (381)
T ss_pred             HHH-HHHHhCCCcccCC-CchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCccc
Confidence            355 7777877664444 778877777777766543  223 3333333222233334444444455655553  48998


Q ss_pred             hhH
Q psy16475        235 SLW  237 (299)
Q Consensus       235 ~~~  237 (299)
                      |..
T Consensus       368 ~~~  370 (381)
T TIGR00837       368 WGG  370 (381)
T ss_pred             cCC
Confidence            875

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>KOG2082|consensus

Probab=97.06  E-value=0.0043  Score=59.31  Aligned_cols=97  Identities=13%  Similarity=0.104  Sum_probs=67.9

Q ss_pred             eeeccccCCch--hhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHHHh-cCCCCC
Q psy16475          2 CFVGARYDHFP--VMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRY-TQPDMH   78 (299)
Q Consensus         2 ~~a~a~~g~lP--~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~E~~   78 (299)
                      ++|.|||+.+|  +.|+|.+ ++|-|..|++++.+++-..++.++.+.+....+......|.+...+...-.. +.|..+
T Consensus       522 LQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLaCavqtLLrtPnWR  600 (1075)
T KOG2082|consen  522 LQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLACAVQTLLRTPNWR  600 (1075)
T ss_pred             HHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCC
Confidence            67899999999  9999977 9999999999999999998888999988877777666666665443333322 234554


Q ss_pred             CCce-ehhHHHHHHHHHHHHHH
Q psy16475         79 RPIK-VSLWVPISFVLICVFLV   99 (299)
Q Consensus        79 ~p~k-iP~~~~~~~~~~~~~~i   99 (299)
                      ..+| .-..++.++...++.++
T Consensus       601 PRfkyyHW~LSflG~sLC~~iM  622 (1075)
T KOG2082|consen  601 PRFKYYHWSLSFLGASLCLAIM  622 (1075)
T ss_pred             ccchhhhhHHHHHHHHHHHHHH
Confidence            4445 32245555544444433

>KOG2083|consensus

Probab=96.95  E-value=0.0025  Score=59.44  Aligned_cols=113  Identities=11%  Similarity=0.107  Sum_probs=88.2

Q ss_pred             ccccchhhhhhhhhhhccccccCccc--hhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q psy16475        138 TRSFNALTYFVQKLMCFVGARYGHFP--AMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISV  215 (299)
Q Consensus       138 ~~~~~~~~~~~sR~~~~~~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  215 (299)
                      .++..++...+.++.. ++++|...|  .+++|-.+|++.|..+.+++..++......++.+.+.-+.+......|....
T Consensus       328 LSsalsslVsap~V~Q-aL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlin  406 (643)
T KOG2083|consen  328 LSSALSSLVSAPKVLQ-ALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALIN  406 (643)
T ss_pred             HHHHHHHHHhhhHHHH-HHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccc
Confidence            3556677888999998 899999999  6789999999999999999999998887788888888888888999999998


Q ss_pred             HHHHhhhccCCCCCCC-ccch-hHHHHHHHHHHHHHHH
Q psy16475        216 CGILYLRYTQPDMHRP-IKVS-LWVPISFVLICVFLVV  251 (299)
Q Consensus       216 ~~~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~  251 (299)
                      .+.+.-+-..++..|| ++.. .|...++.+.++.+.+
T Consensus       407 f~~f~aSl~~s~~wRp~f~~yn~wVSllGalKOG~ImF  444 (643)
T KOG2083|consen  407 FSCFHASLAISEGWRPSFKFYNAWVSLLGALLCLAIMF  444 (643)
T ss_pred             hhhhhhhhccccccCchhhhHHHHHHHHHHHHHHHHHH
Confidence            8887666555555443 3333 2566666655555444

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=94.40  E-value=0.42  Score=43.36  Aligned_cols=71  Identities=15%  Similarity=0.110  Sum_probs=56.9

Q ss_pred             hhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHH--HHhcCCCCCCCceehh
Q psy16475         13 VMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILY--LRYTQPDMHRPIKVSL   85 (299)
Q Consensus        13 ~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~--~~~~~~E~~~p~kiP~   85 (299)
                      ++|+|+++|  .|+.+.++...+....+...+.+++.++.....+..|-.+......  +|++.+|.++|+|.|.
T Consensus       294 ~~f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~~~  366 (378)
T TIGR00796       294 EYFHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQITL  366 (378)
T ss_pred             HHHHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeehHH
Confidence            678898754  9999988888777777777889999999988888877776655555  7777788888999764

transmembrane helical spanners.

>PF13906 AA_permease_C: C-terminus of AA_permease

Probab=91.50  E-value=0.51  Score=29.45  Aligned_cols=48  Identities=19%  Similarity=0.164  Sum_probs=35.7

Q ss_pred             ccchh--HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheeeeeeeec
Q psy16475        232 IKVSL--WVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWR  282 (299)
Q Consensus       232 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (299)
                      ||.|.  +.|.+.+...+++.....   .....-..++.++|.++|+....|+
T Consensus         1 F~vP~vP~~P~~si~~ni~Lm~~L~---~~twirf~iWl~iGl~iYf~YG~~h   50 (51)
T PF13906_consen    1 FKVPLVPFLPALSILINIYLMAQLS---ALTWIRFGIWLAIGLVIYFGYGIRH   50 (51)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHhh---HhHHHHHHHHHHHHHHHHHheeeec
Confidence            56666  589999999999988653   3466666778888988888665554

>KOG1288|consensus

Probab=91.21  E-value=0.54  Score=45.24  Aligned_cols=81  Identities=14%  Similarity=0.072  Sum_probs=61.5

Q ss_pred             eeeccccCCch--hhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHHHhcC-CCCC
Q psy16475          2 CFVGARYDHFP--VMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQ-PDMH   78 (299)
Q Consensus         2 ~~a~a~~g~lP--~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~-~E~~   78 (299)
                      +.+.|||..+|  -.|+|.....+.|+.|+.++-++.-+.++.|+.+.+..+.+.....+|+....+...+...+ |..+
T Consensus       398 L~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLlty~~vNLacl~LeissAPNFR  477 (945)
T KOG1288|consen  398 LEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLLTYGAVNLACLLLEISSAPNFR  477 (945)
T ss_pred             HHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Confidence            45789999999  67888877889999999999888887777788888888877777777776666666555554 4443


Q ss_pred             CCce
Q psy16475         79 RPIK   82 (299)
Q Consensus        79 ~p~k   82 (299)
                      .-+|
T Consensus       478 PtFk  481 (945)
T KOG1288|consen  478 PTFK  481 (945)
T ss_pred             chhh
Confidence            3355

>PHA02764 hypothetical protein; Provisional

Probab=86.44  E-value=5.9  Score=34.88  Aligned_cols=28  Identities=18%  Similarity=0.080  Sum_probs=24.8

Q ss_pred             hhhhhhhccccccCccchhhhhcCCCCCCch
Q psy16475        147 FVQKLMCFVGARYGHFPAMLSHINISRFTPT  177 (299)
Q Consensus       147 ~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~  177 (299)
                      -.||..+ +|+-|+.+|+.|+|+||  ++|.
T Consensus       258 ~~srli~-~~~fd~~lpe~f~k~~~--nv~~  285 (399)
T PHA02764        258 IQSRLIQ-TMSFDKVLPEKFSKINP--NVLL  285 (399)
T ss_pred             hHHHHHH-HHHhhhhchHHHhccCC--Ccee
Confidence            4689999 99999999999999973  8887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	299
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	8e-08
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	2e-06
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	1e-04

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 13/138 (9%)

Query: 154 FVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVF-------LLITYSSFV 206
              A  G FP + + +N    TP   L+ + IL      +S          L+ + S   
Sbjct: 302 KAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIF 360

Query: 207 ESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVL 266
                + +   +L L +      RP    L V     L C++ VV    +    V  + +
Sbjct: 361 TLVPYLYTCAALLLLGHGHFGKARPA--YLAVTTIAFLYCIWAVVGSGAKE---VMWSFV 415

Query: 267 ITLSGVPVYLIGVKWRDK 284
             +    +Y +      K
Sbjct: 416 TLMVITAMYALNYNRLHK 433

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 25/138 (18%), Positives = 45/138 (32%), Gaps = 13/138 (9%)

Query: 3   FVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVF-------LLITYSSFV 55
              A    FP + + +N    TP   L+ + IL      +S          L+ + S   
Sbjct: 302 KAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIF 360

Query: 56  ESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVL 115
                + +   +L L +      RP    L V     L C++ VV    +    V  + +
Sbjct: 361 TLVPYLYTCAALLLLGHGHFGKARPA--YLAVTTIAFLYCIWAVVGSGAKE---VMWSFV 415

Query: 116 ITLSGVPVYLIGVKWRDK 133
             +    +Y +      K
Sbjct: 416 TLMVITAMYALNYNRLHK 433

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 18/127 (14%), Positives = 42/127 (33%), Gaps = 8/127 (6%)

Query: 152 MCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVE-SAF 210
           + +  A+ G  P          F  T  L   + L +      ++  + + +S V    +
Sbjct: 298 VAYSLAKDGELPEFFERKV--WFKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIY 355

Query: 211 IMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLS 270
           + + +     L          +  S ++ +  V + +           R V   ++ T  
Sbjct: 356 LFVIL-SHYILIDEVGGRKEIVIFS-FIVVLGVFLLLLYY---QWITNRFVFYGIIATFI 410

Query: 271 GVPVYLI 277
           GV ++ I
Sbjct: 411 GVLIFEI 417

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	299
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.84
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	99.84
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	99.77
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.91
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	98.86
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	98.41

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.84  E-value=1.7e-21  Score=178.96  Aligned_cols=218  Identities=16%  Similarity=0.143  Sum_probs=147.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcchHHH------HHHHHHHHhccceeeee
Q psy16475         59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEAPREV------GMAVLITLSGVPVYLIG  127 (299)
Q Consensus        59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~~~~~------~~~~~~~~~g~~~~~~~  127 (299)
                      ...+++.|+|...+.+||.|||+| +|+++.........+++....    ..++++.      .........|-......
T Consensus       199 ~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~  278 (445)
T 3l1l_A          199 VTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIV  278 (445)
T ss_dssp             HHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHH
Confidence            456788999999999999999988 999665555444444333222    1111110      00000000110000000


Q ss_pred             eeecccCcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh-------ccHHHHH
Q psy16475        128 VKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT-------SDVFLLI  200 (299)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-------~~~~~l~  200 (299)
                        .........++.|+.+++.+|.++ +|+|||.+|++|+|+| |+++|+++++++++++.++.+.       +.++.+.
T Consensus       279 --~~~~~~~~~~~~~~~~~~~sR~~~-~~a~dg~lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~  354 (445)
T 3l1l_A          279 --SFCAAAGCLGSLGGWTLLAGQTAK-AAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVS  354 (445)
T ss_dssp             --HHHHHHHHTTTHHHHHHHHHHHHH-HHHHTTSSCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence              000001234788889999999999 9999999999999999 6799999999999987766543       3478999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheeeeeee
Q psy16475        201 TYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVK  280 (299)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (299)
                      ++.++..++.|.+..++++++|+|+| .+| ++.....+.++.+.+++..+..   ++.....+.++.++|.++|++.+|
T Consensus       355 ~~~~~~~~~~y~~~~~~~~~~r~~~~-~~r-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~y~~~~~  429 (445)
T 3l1l_A          355 SVSVIFTLVPYLYTCAALLLLGHGHF-GKA-RPAYLAVTTIAFLYCIWAVVGS---GAKEVMWSFVTLMVITAMYALNYN  429 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSSS-GGG-CTTTHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCc-ccc-cchhHHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999887 333 2333456666666666665433   445667778888889888887765


Q ss_pred             ecCCc
Q psy16475        281 WRDKP  285 (299)
Q Consensus       281 ~~~~~  285 (299)
                      ++++.
T Consensus       430 ~~~~~  434 (445)
T 3l1l_A          430 RLHKN  434 (445)
T ss_dssp             TTCCC
T ss_pred             hcccC
Confidence            54433

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=99.84  E-value=7.8e-21  Score=177.48  Aligned_cols=188  Identities=13%  Similarity=0.167  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcchHHH-----HHHHHHHHhccceeee
Q psy16475         57 SAFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEAPREV-----GMAVLITLSGVPVYLI  126 (299)
Q Consensus        57 ~~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~~~~~-----~~~~~~~~~g~~~~~~  126 (299)
                      ....++++.|+|...+.+||.|||+| +|+++.........+++...+    ..++++.     .........+      
T Consensus       207 ~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  280 (511)
T 4djk_A          207 FVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMS------  280 (511)
T ss_dssp             HHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHS------
T ss_pred             HHHHHHHHhhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHH------
Confidence            34567899999999999999999999 999665544444443333222    1111110     0000000011      


Q ss_pred             eeeec--ccC----------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHH-HHHh
Q psy16475        127 GVKWR--DKP----------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLF-MLFT  193 (299)
Q Consensus       127 ~~~~~--~~~----------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~-~~~~  193 (299)
                        ..+  ...          ....++.|+.+.+.+|.++ ++||||.+|++|+|+| |+++|.+|++++..+..+ +...
T Consensus       281 --~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~-a~ardg~lP~~~~~~~-~~~~P~~ai~~~~~~~~l~~~~~  356 (511)
T 4djk_A          281 --HVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMY-VTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIIL  356 (511)
T ss_dssp             --SSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTC-HHHHGGGCSSSCCCCC-SSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             --HhCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccCCcccHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHh
Confidence              111  000          1123677788899999999 9999999999999999 689999999998554333 3333


Q ss_pred             cc--------HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchh------HHHHHHHHHHHHHHHhhc
Q psy16475        194 SD--------VFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSL------WVPISFVLICVFLVVTPI  254 (299)
Q Consensus       194 ~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  254 (299)
                      ++        ++.+.++.+....+.|.+..++++++|+|+|+.++|||.+.      ..+.+.++.+++..+...
T Consensus       357 ~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (511)
T 4djk_A          357 TNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSF  431 (511)
T ss_dssp             HSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCSCCCSSTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCchHHHHHHHHHHHHHHHHHHeee
Confidence            33        78899999999999999999999999999888889999872      245555555555555443

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=99.77  E-value=4.1e-19  Score=162.96  Aligned_cols=179  Identities=15%  Similarity=0.104  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcchHHHHHH--HHHHHhccceeeeeeeecc
Q psy16475         60 IMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEAPREVGMA--VLITLSGVPVYLIGVKWRD  132 (299)
Q Consensus        60 ~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~  132 (299)
                      ..+++.|+|...+.+||.|||+| +|+++.........+++....    ..++++....  ........+   .......
T Consensus       197 ~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~g~~~~  273 (444)
T 3gia_A          197 FFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKP---FLGNLGF  273 (444)
T ss_dssp             GGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHH---HHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHH---HhhHHHH
Confidence            34688999999999999999999 999665555444444433222    1222222110  000000000   0000000


Q ss_pred             ------cCcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q psy16475        133 ------KPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFV  206 (299)
Q Consensus       133 ------~~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~  206 (299)
                            ......++.|+.+++.+|.++ +++|||.+|++|+|+| + ++|.++++++++++.++.+..+++.+.++.+..
T Consensus       274 ~~i~~~~~~~~~~~~~~~~~~~sR~l~-a~a~dg~lP~~f~~~~-~-~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~  350 (444)
T 3gia_A          274 LLISIGALFSISSAMNATIYGGANVAY-SLAKDGELPEFFERKV-W-FKSTEGLYITSALGVLFALLFNMEGVASITSAV  350 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTHHHHH-HHHHHSSCCSSCCTTS-C-CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCHHHhCCC-C-CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence                  011234678889999999999 9999999999999988 4 569999999999999888888899999999999


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCCCccchhHHHHHHHHHHHHHHH
Q psy16475        207 ESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVV  251 (299)
Q Consensus       207 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (299)
                      ..+.|.+..++++++||++|+.       .+.+.++++.+++..+
T Consensus       351 ~~~~~~~~~~~~~~~r~~~~~~-------~~~~~~~~~~~~~~~~  388 (444)
T 3gia_A          351 FMVIYLFVILSHYILIDEVGGR-------KEIVIFSFIVVLGVFL  388 (444)
T ss_dssp             HHHHHHHHHHHHHHTHHHHCCC-------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCCc-------chHHHHHHHHHHHHHH
Confidence            9999999999999999887542       1445555555554443

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=98.91  E-value=3e-09  Score=97.16  Aligned_cols=120  Identities=16%  Similarity=0.202  Sum_probs=84.6

Q ss_pred             eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh-------cChHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q psy16475          2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT-------SDVFLLITYSSFVESAFIMISVCGILYLRYTQ   74 (299)
Q Consensus         2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~-------~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~   74 (299)
                      +|+|||||.+|++|+|+| |+++|+++++++.+++.++...       +.++.+.+..+...+..|.+...+....|++.
T Consensus       301 ~~~~a~dg~lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~  379 (445)
T 3l1l_A          301 AKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGH  379 (445)
T ss_dssp             HHHHHHTTSSCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHhCCCCcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            578999999999999999 6899999999998877665542       34677888888888889999999999998876


Q ss_pred             CCCCCCceehh--HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhccceeeeeee
Q psy16475         75 PDMHRPIKVSL--WVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVK  129 (299)
Q Consensus        75 ~E~~~p~kiP~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  129 (299)
                      +   +| |.|.  .++......+   +...+..++.....+......|.++|...++
T Consensus       380 ~---~~-r~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~  429 (445)
T 3l1l_A          380 F---GK-ARPAYLAVTTIAFLYC---IWAVVGSGAKEVMWSFVTLMVITAMYALNYN  429 (445)
T ss_dssp             S---GG-GCTTTHHHHHHHHHHH---HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             c---cc-ccchhHHHHHHHHHHH---HHHHHHcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5   22 2232  2333332222   2233344555666677777888887765443

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=98.86  E-value=5.2e-09  Score=97.29  Aligned_cols=82  Identities=12%  Similarity=0.336  Sum_probs=66.1

Q ss_pred             eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHH-HHHhcC--------hHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q psy16475          2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLF-MLFTSD--------VFLLITYSSFVESAFIMISVCGILYLRY   72 (299)
Q Consensus         2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i-~~~~~~--------~~~l~~~~~~~~~~~~~~~~~g~~~~~~   72 (299)
                      +++|||||.+|++|+|+| |+++|+++++++.++..+ ++..++        ++.+.+..+......|.+...+....|+
T Consensus       316 l~a~ardg~lP~~~~~~~-~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~~~~r~  394 (511)
T 4djk_A          316 MYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVL  394 (511)
T ss_dssp             TCHHHHGGGCSSSCCCCC-SSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCcccHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999 689999999988443332 333333        4566777777788889999999999999


Q ss_pred             cCCCCCCCceeh
Q psy16475         73 TQPDMHRPIKVS   84 (299)
Q Consensus        73 ~~~E~~~p~kiP   84 (299)
                      +.+|.++|+|.|
T Consensus       395 ~~~~~~~~~~~~  406 (511)
T 4djk_A          395 KHPDLKRTFNIP  406 (511)
T ss_dssp             HCCSCCCSCCCS
T ss_pred             hCCCCCCCeecC
Confidence            998889999987

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=98.41  E-value=3e-07  Score=83.83  Aligned_cols=72  Identities=13%  Similarity=0.101  Sum_probs=62.7

Q ss_pred             eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCC
Q psy16475          2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQP   75 (299)
Q Consensus         2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~   75 (299)
                      +|+|||||.+|++|+|+| + ++|.++++++.+++.++....+++.+.+..+......+.+...+....|++.+
T Consensus       299 l~a~a~dg~lP~~f~~~~-~-~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~  370 (444)
T 3gia_A          299 AYSLAKDGELPEFFERKV-W-FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVG  370 (444)
T ss_dssp             HHHHHHHSSCCSSCCTTS-C-CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred             HHHHHHCCCCCHHHhCCC-C-CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            589999999999999988 4 56999999999998888877889999999998888899998888888877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00