Psyllid ID: psy16484

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
MVKILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNEAKFQAAINSKII
Secondary Structure (PSIPRED)
ccHHHHHHHcHHHHHHHHHHHcccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEcccccHHHHHHHHHHccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MVKILEsatdtegvhtclsdllpqgvyyrfnpylsevpdldetrpeKLAQLRLDTDIYIRKNEAKFQAAINSKII
Flexible Loop (DISEMBL)
mvkilesatdtegvhtclsdllpqgVYYRFNPYLsevpdldetrPEKLAQLRLDTDIYIRKNEAKFQaainskii
Low Complexity Region (SEG)
MVKILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNEAKFQAAINSKII
Disordered region (IsUnstruct)
***********EGVHTCLSDLLPQGVYYRFNPYLSEVPDLD*****KLAQLRLDTDIYIRKNEA***********
Disordered Region (DISOPRED)
*VKILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNEAKFQAAINSKII
Disordered Region (DISEMBL)
MVKILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNEAKFQAAINSKII
Disordered Region (DISPRO)
*VKILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNEAKFQAAINSKII
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVKILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNEAKFQAAINSKII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	75	2.2.26 [Sep-21-2011]
Q5XTS1	786	Calcium-independent phosp	yes	N/A	0.893	0.085	0.492	4e-11
Q9NP80	782	Calcium-independent phosp	yes	N/A	0.893	0.085	0.492	9e-11
Q8K1N1	776	Calcium-independent phosp	yes	N/A	0.893	0.086	0.477	2e-10

>sp|Q5XTS1|PLPL8_RABIT Calcium-independent phospholipase A2-gamma OS=Oryctolagus cuniculus GN=PNPLA8 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)

Query: 1   MVKILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIR 60
           +  ++ SATDTE VH  L  LLP   Y+RFNP + E   LDE+R EKL QL+L+   YI 
Sbjct: 684 LSNVINSATDTEEVHIMLDGLLPPDTYFRFNPVMCENIPLDESRNEKLDQLQLEGSKYIE 743

Query: 61  KNEAKFQ 67
           +NE K +
Sbjct: 744 RNEHKMK 750

Calcium-independent phospholipase A2, which catalyzes the hydrolysis of the sn-2 position of glycerophospholipids, PtdSer and to a lower extent PtdCho. Cleaves membrane phospholipids.
Oryctolagus cuniculus (taxid: 9986)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 5

>sp|Q9NP80|PLPL8_HUMAN Calcium-independent phospholipase A2-gamma OS=Homo sapiens GN=PNPLA8 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)

Query: 1   MVKILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIR 60
           +  ++ SATDTE VH  L  LLP   Y+RFNP + E   LDE+R EKL QL+L+   YI 
Sbjct: 680 LSNVINSATDTEEVHIMLDGLLPPDTYFRFNPVMCENIPLDESRNEKLDQLQLEGLKYIE 739

Query: 61  KNEAKFQ 67
           +NE K +
Sbjct: 740 RNEQKMK 746

Calcium-independent phospholipase A2, which catalyzes the hydrolysis of the sn-2 position of glycerophospholipids, PtdSer and to a lower extent PtdCho. Cleaves membrane phospholipids.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

>sp|Q8K1N1|PLPL8_MOUSE Calcium-independent phospholipase A2-gamma OS=Mus musculus GN=Pnpla8 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 43/67 (64%)

Query: 1   MVKILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIR 60
           +  ++ SATDTE VH  L  LLP   Y+RFNP + E   LDE+R EKL QL+L+   YI 
Sbjct: 674 LSNVISSATDTEEVHIMLDGLLPSDTYFRFNPVICENIPLDESRDEKLDQLQLEGMKYIE 733

Query: 61  KNEAKFQ 67
           +N+ K +
Sbjct: 734 RNDQKMK 740

Calcium-independent phospholipase A2, which catalyzes the hydrolysis of the sn-2 position of glycerophospholipids, PtdSer and to a lower extent PtdCho. Cleaves membrane phospholipids.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
345487100	633	PREDICTED: calcium-independent phospholi	0.946	0.112	0.630	4e-18
383856050	634	PREDICTED: calcium-independent phospholi	0.893	0.105	0.641	4e-18
328776366	636	PREDICTED: calcium-independent phospholi	0.893	0.105	0.641	8e-18
307173927	599	Calcium-independent phospholipase A2-gam	0.893	0.111	0.611	3e-17
350416383	636	PREDICTED: calcium-independent phospholi	0.893	0.105	0.626	3e-17
391339829	578	PREDICTED: calcium-independent phospholi	0.92	0.119	0.623	5e-17
340717110	636	PREDICTED: calcium-independent phospholi	0.893	0.105	0.626	5e-17
307214406	592	Calcium-independent phospholipase A2-gam	0.893	0.113	0.611	8e-17
332029292	732	Calcium-independent phospholipase A2-gam	0.893	0.091	0.597	9e-17
427796565	698	Putative intracellular membrane-bound ca	0.96	0.103	0.555	1e-16

>gi|345487100|ref|XP_001601278.2| PREDICTED: calcium-independent phospholipase A2-gamma-like [Nasonia vitripennis]

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/73 (63%), Positives = 57/73 (78%), Gaps = 2/73 (2%)

Query: 3   KILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKN 62
           KIL+SATDTE VHT L+DLLP  VYYRFNPYL+E+  + E RPEK++QL  D  +YIR+N
Sbjct: 540 KILDSATDTEAVHTMLNDLLPDHVYYRFNPYLTEMLTMTEIRPEKISQLEQDAAMYIRRN 599

Query: 63  EAKFQAAINSKII 75
           E KFQ A  +K+I
Sbjct: 600 EEKFQKA--AKVI 610

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856050|ref|XP_003703523.1| PREDICTED: calcium-independent phospholipase A2-gamma-like [Megachile rotundata]

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 54/67 (80%)

Query: 3   KILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKN 62
           KIL+SATDTE VHT L+DLLP+ VY+RFNPYL+E+  + E RPEK++QL  D  +YIR+N
Sbjct: 541 KILDSATDTEAVHTMLNDLLPEHVYFRFNPYLTEMLSMVEIRPEKISQLEQDAKMYIRRN 600

Query: 63  EAKFQAA 69
           E KFQ A
Sbjct: 601 EEKFQKA 607

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776366|ref|XP_001122377.2| PREDICTED: calcium-independent phospholipase A2-gamma-like [Apis mellifera]

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 53/67 (79%)

Query: 3   KILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKN 62
           KIL+SATDTE VHT L+DLLP+ VY+RFNPYL+E+  + E RPEK+ QL  D  +YIR+N
Sbjct: 543 KILDSATDTEAVHTMLNDLLPEYVYFRFNPYLTEMLSMVEIRPEKITQLEQDAKMYIRRN 602

Query: 63  EAKFQAA 69
           E KFQ A
Sbjct: 603 EEKFQKA 609

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173927|gb|EFN64675.1| Calcium-independent phospholipase A2-gamma [Camponotus floridanus]

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 53/67 (79%)

Query: 3   KILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKN 62
           KIL+SATDTE VHT L+DLLP  +Y+RFNPYL+E+  + E RPEK++Q+  D  +YIR+N
Sbjct: 506 KILDSATDTEAVHTMLNDLLPDHIYFRFNPYLTEMLSMVEIRPEKISQMEQDARMYIRRN 565

Query: 63  EAKFQAA 69
           E KFQ A
Sbjct: 566 EEKFQKA 572

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416383|ref|XP_003490929.1| PREDICTED: calcium-independent phospholipase A2-gamma-like [Bombus impatiens]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 52/67 (77%)

Query: 3   KILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKN 62
           KIL+SATDTE VH  L+DLLP+ VY+RFNPYL+E+  + E RPEK+ QL  D  +YIR+N
Sbjct: 543 KILDSATDTEAVHIMLNDLLPENVYFRFNPYLTEMLSMVEIRPEKINQLEQDARMYIRRN 602

Query: 63  EAKFQAA 69
           E KFQ A
Sbjct: 603 EEKFQKA 609

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391339829|ref|XP_003744249.1| PREDICTED: calcium-independent phospholipase A2-gamma-like [Metaseiulus occidentalis]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 54/69 (78%)

Query: 1   MVKILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIR 60
           ++KI++SATDTE VHT  +DLL  G YYRFNPYLSE   LDETRPEK+ +LRLD  +Y+R
Sbjct: 483 IMKIVDSATDTEAVHTLCNDLLKPGTYYRFNPYLSEPFTLDETRPEKMDRLRLDAQMYLR 542

Query: 61  KNEAKFQAA 69
           +N+ KF  A
Sbjct: 543 RNDRKFVHA 551

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717110|ref|XP_003397031.1| PREDICTED: calcium-independent phospholipase A2-gamma-like [Bombus terrestris]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 52/67 (77%)

Query: 3   KILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKN 62
           KIL+SATDTE VH  L+DLLP+ VY+RFNPYL+E+  + E RPEK+ QL  D  +YIR+N
Sbjct: 543 KILDSATDTEAVHIMLNDLLPEDVYFRFNPYLTEMLSMVEIRPEKINQLEQDARMYIRRN 602

Query: 63  EAKFQAA 69
           E KFQ A
Sbjct: 603 EEKFQKA 609

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214406|gb|EFN89477.1| Calcium-independent phospholipase A2-gamma [Harpegnathos saltator]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 52/67 (77%)

Query: 3   KILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKN 62
           KIL+SATDTE VHT L+DLLP  +Y+RFNPYL+E+  + E RPEK+ Q+  D  +YIR+N
Sbjct: 499 KILDSATDTEAVHTMLNDLLPDHIYFRFNPYLTEMLSMVEIRPEKIDQMEQDARMYIRRN 558

Query: 63  EAKFQAA 69
           E KFQ A
Sbjct: 559 EDKFQKA 565

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029292|gb|EGI69275.1| Calcium-independent phospholipase A2-gamma [Acromyrmex echinatior]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 53/67 (79%)

Query: 3   KILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKN 62
           KIL+SATDTE VHT L+DLLP  +Y+RFNPYL+E+  + E RP+K++Q+  D  +YIR+N
Sbjct: 639 KILDSATDTEAVHTMLNDLLPDHIYFRFNPYLTEMLSMVEIRPDKISQMEQDARMYIRRN 698

Query: 63  EAKFQAA 69
           E KFQ A
Sbjct: 699 EEKFQKA 705

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427796565|gb|JAA63734.1| Putative intracellular membrane-bound ca2+-independent phospholipase a2, partial [Rhipicephalus pulchellus]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 53/72 (73%)

Query: 1   MVKILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIR 60
           ++K+++SATDTE VHT + DLLP   Y+RFNPYLSE   LDE R EKL QL+ D  +Y+R
Sbjct: 604 ILKVIDSATDTEAVHTTIQDLLPPNAYFRFNPYLSEWITLDENRAEKLDQLKQDAQMYLR 663

Query: 61  KNEAKFQAAINS 72
           +N  KF +A+ S
Sbjct: 664 RNSEKFDSAVKS 675

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
WB|WBGene00022233	546	Y73B6BL.4 [Caenorhabditis eleg	0.92	0.126	0.492	2.8e-14
UNIPROTKB|E1BVG7	782	E1BVG7 "Uncharacterized protei	0.973	0.093	0.48	1.2e-11
UNIPROTKB|F1SAE7	143	PNPLA8 "Uncharacterized protei	0.853	0.447	0.515	1.3e-11
ZFIN|ZDB-GENE-070705-553	694	pnpla8 "patatin-like phospholi	0.893	0.096	0.477	4.4e-11
UNIPROTKB|F6Y4R5	713	PNPLA8 "Uncharacterized protei	0.853	0.089	0.515	2e-10
UNIPROTKB|E1BE78	784	PNPLA8 "Uncharacterized protei	0.853	0.081	0.515	2.3e-10
UNIPROTKB|E2QZP1	784	PNPLA8 "Uncharacterized protei	0.853	0.081	0.515	2.3e-10
UNIPROTKB|C9JN30	717	PNPLA8 "Calcium-independent ph	0.853	0.089	0.515	2.6e-10
UNIPROTKB|J3KPL1	720	PNPLA8 "Calcium-independent ph	0.853	0.088	0.515	2.6e-10
MGI|MGI:1914702	776	Pnpla8 "patatin-like phospholi	0.853	0.082	0.5	2.9e-10

WB|WBGene00022233 Y73B6BL.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 192 (72.6 bits), Expect = 2.8e-14, P = 2.8e-14
 Identities = 34/69 (49%), Positives = 50/69 (72%)

Query:     1 MVKILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIR 60
             +++I++SATDTEGVH  + D+LP+ VYYRFNPY++    LDE   E+L Q+  D + Y+R
Sbjct:   447 LLRIIDSATDTEGVHMNVHDMLPESVYYRFNPYMTYAYGLDEIDQERLEQMASDAEFYVR 506

Query:    61 KNEAKFQAA 69
             +N  K +AA
Sbjct:   507 RNSNKLEAA 515

GO:0006629 "lipid metabolic process" evidence=IEA

UNIPROTKB|E1BVG7 E1BVG7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 170 (64.9 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 36/75 (48%), Positives = 49/75 (65%)

Query:     1 MVKILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIR 60
             +  ++ SATDTE VHT L  LLP   Y+RFNP + E   LDE+R EKL+QL+ D   Y+ 
Sbjct:   680 LTNVISSATDTEEVHTMLDALLPPDTYFRFNPLMHEDIPLDESRKEKLSQLQTDGIRYLE 739

Query:    61 KNEAKFQAAINSKII 75
             +NE K + A  +KI+
Sbjct:   740 RNEEKLRKA--AKIL 752

GO:0001516 "prostaglandin biosynthetic process" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0019369 "arachidonic acid metabolic process" evidence=IEA

GO:0034638 "phosphatidylcholine catabolic process" evidence=IEA

GO:0043651 "linoleic acid metabolic process" evidence=IEA

GO:0046338 "phosphatidylethanolamine catabolic process" evidence=IEA

GO:0047499 "calcium-independent phospholipase A2 activity" evidence=IEA

GO:0050482 "arachidonic acid secretion" evidence=IEA

UNIPROTKB|F1SAE7 PNPLA8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query:     4 ILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNE 63
             ++ SATDTE VH  L  LLP   Y+RFNP + E   LDE+R EKL QL+L+   YI +NE
Sbjct:    44 VINSATDTEEVHVMLDGLLPPDTYFRFNPVMCENIPLDESRNEKLNQLQLEGLKYIERNE 103

Query:    64 AKFQ 67
              K +
Sbjct:   104 EKMK 107

GO:0008152 "metabolic process" evidence=IEA

ZFIN|ZDB-GENE-070705-553 pnpla8 "patatin-like phospholipase domain containing 8" [Danio rerio (taxid:7955)]

 Score = 164 (62.8 bits), Expect = 4.4e-11, P = 4.4e-11
 Identities = 32/67 (47%), Positives = 43/67 (64%)

Query:     1 MVKILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIR 60
             +  ++ SATDTE VHT L  LLP   Y+RFNPY+SE   LDE R E+L  L+ +   Y+ 
Sbjct:   592 LTNVISSATDTEEVHTMLDALLPPNTYFRFNPYMSEDVPLDENRQERLDYLQAEGRRYLE 651

Query:    61 KNEAKFQ 67
             +NE K +
Sbjct:   652 RNENKLK 658

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F6Y4R5 PNPLA8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 158 (60.7 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query:     4 ILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNE 63
             ++ SATDTE VH  L  LLP   Y+RFNP + E   LDE+R EKL QL+L+   YI +NE
Sbjct:   584 VINSATDTEEVHVMLDGLLPPDTYFRFNPVMCENIPLDESRNEKLNQLQLEGLKYIERNE 643

Query:    64 AKFQ 67
              K +
Sbjct:   644 EKMK 647

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

UNIPROTKB|E1BE78 PNPLA8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 158 (60.7 bits), Expect = 2.3e-10, P = 2.3e-10
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query:     4 ILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNE 63
             ++ SATDTE VH  L  LLP   Y+RFNP + E   LDE+R EKL QL+L+   YI +NE
Sbjct:   685 VINSATDTEEVHVMLDGLLPPDTYFRFNPVMCENIPLDESRNEKLNQLQLEGLKYIERNE 744

Query:    64 AKFQ 67
              K +
Sbjct:   745 EKMK 748

GO:0050482 "arachidonic acid secretion" evidence=IEA

GO:0047499 "calcium-independent phospholipase A2 activity" evidence=IEA

GO:0046338 "phosphatidylethanolamine catabolic process" evidence=IEA

GO:0043651 "linoleic acid metabolic process" evidence=IEA

GO:0034638 "phosphatidylcholine catabolic process" evidence=IEA

GO:0019369 "arachidonic acid metabolic process" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0001516 "prostaglandin biosynthetic process" evidence=IEA

UNIPROTKB|E2QZP1 PNPLA8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 158 (60.7 bits), Expect = 2.3e-10, P = 2.3e-10
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query:     4 ILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNE 63
             ++ SATDTE VH  L  LLP   Y+RFNP + E   LDE+R EKL QL+L+   YI +NE
Sbjct:   685 VINSATDTEEVHVMLDGLLPPDTYFRFNPVMCENIPLDESRNEKLNQLQLEGLKYIERNE 744

Query:    64 AKFQ 67
              K +
Sbjct:   745 EKMK 748

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

UNIPROTKB|C9JN30 PNPLA8 "Calcium-independent phospholipase A2-gamma" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query:     4 ILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNE 63
             ++ SATDTE VH  L  LLP   Y+RFNP + E   LDE+R EKL QL+L+   YI +NE
Sbjct:   618 VINSATDTEEVHIMLDGLLPPDTYFRFNPVMCENIPLDESRNEKLDQLQLEGLKYIERNE 677

Query:    64 AKFQ 67
              K +
Sbjct:   678 QKMK 681

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|J3KPL1 PNPLA8 "Calcium-independent phospholipase A2-gamma" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query:     4 ILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNE 63
             ++ SATDTE VH  L  LLP   Y+RFNP + E   LDE+R EKL QL+L+   YI +NE
Sbjct:   621 VINSATDTEEVHIMLDGLLPPDTYFRFNPVMCENIPLDESRNEKLDQLQLEGLKYIERNE 680

Query:    64 AKFQ 67
              K +
Sbjct:   681 QKMK 684

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

MGI|MGI:1914702 Pnpla8 "patatin-like phospholipase domain containing 8" [Mus musculus (taxid:10090)]

 Score = 157 (60.3 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 32/64 (50%), Positives = 42/64 (65%)

Query:     4 ILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNE 63
             ++ SATDTE VH  L  LLP   Y+RFNP + E   LDE+R EKL QL+L+   YI +N+
Sbjct:   677 VISSATDTEEVHIMLDGLLPSDTYFRFNPVICENIPLDESRDEKLDQLQLEGMKYIERND 736

Query:    64 AKFQ 67
              K +
Sbjct:   737 QKMK 740

GO:0001516 "prostaglandin biosynthetic process" evidence=ISO

GO:0004622 "lysophospholipase activity" evidence=IEA

GO:0005622 "intracellular" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005777 "peroxisome" evidence=ISO

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0008219 "cell death" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016042 "lipid catabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0019369 "arachidonic acid metabolic process" evidence=ISO

GO:0034638 "phosphatidylcholine catabolic process" evidence=ISO

GO:0043651 "linoleic acid metabolic process" evidence=ISO

GO:0046338 "phosphatidylethanolamine catabolic process" evidence=ISO

GO:0047499 "calcium-independent phospholipase A2 activity" evidence=ISO

GO:0050482 "arachidonic acid secretion" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	75
cd07211	308	cd07211, Pat_PNPLA8, Patatin-like phospholipase do	9e-28
cd07212	312	cd07212, Pat_PNPLA9, Patatin-like phospholipase do	2e-07

>gnl|CDD|132850 cd07211, Pat_PNPLA8, Patatin-like phospholipase domain containing protein 8

 Score =  100 bits (252), Expect = 9e-28
 Identities = 38/61 (62%), Positives = 48/61 (78%)

Query: 2   VKILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRK 61
           + +++SATDTE VHT L DLLP  VY+RFNP +SE  +LDETRPEKL QL+ DT  YI++
Sbjct: 248 LNLIDSATDTERVHTALDDLLPPDVYFRFNPVMSECVELDETRPEKLDQLQDDTLEYIKR 307

Query: 62  N 62
           N
Sbjct: 308 N 308

PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus. Length = 308

>gnl|CDD|132851 cd07212, Pat_PNPLA9, Patatin-like phospholipase domain containing protein 9

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 9/65 (13%)

Query: 4   ILESATDTEGVHT------CLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDI 57
           +++  T ++G         C S  +P   Y+RF+P LS+   LDET  E L  +  DT++
Sbjct: 250 VVDQCTASDGAPVDRARAWCESIGIP---YFRFSPPLSKDIMLDETDDEDLVNMLWDTEV 306

Query: 58  YIRKN 62
           YI  +
Sbjct: 307 YIYTH 311

PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus. Length = 312

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	75
KOG4231|consensus	763		99.88
cd07212	312	Pat_PNPLA9 Patatin-like phospholipase domain conta	99.71
cd07211	308	Pat_PNPLA8 Patatin-like phospholipase domain conta	99.49
cd07215	329	Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipa	99.34
cd07216	309	Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipa	98.7
cd07214	349	Pat17_isozyme_like Patatin-like phospholipase of p	98.35
cd07199	258	Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipas	97.64
cd07213	288	Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipa	97.52
KOG1384|consensus	348		86.37

>KOG4231|consensus

Probab=99.88  E-value=3.3e-23  Score=158.44  Aligned_cols=74  Identities=41%  Similarity=0.640  Sum_probs=71.1

Q ss_pred             CcchhccccccHHHHHHHHHhCCCCceEEecCCCCCCCCccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q psy16484          1 MVKILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNEAKFQAAINSKI   74 (75)
Q Consensus         1 ~~~vvdsatdte~v~~~~~~ll~~~~YfRfnP~l~~~i~LDe~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~Ll   74 (75)
                      |..+++||||||+||.++..|||+.+||||||+|...++|||+|+|+|.+|..++..||++|.++++++|+.|.
T Consensus       657 L~~~i~SatdtEevh~~l~~mLPe~~YfRFNPvm~~~~~LDE~d~e~l~ql~~~~e~yI~rN~qk~k~vaerL~  730 (763)
T KOG4231|consen  657 LIESICSATDTEEVHSTLLPMLPEIQYFRFNPVMDRCMELDETDPEILLQLEAAIEEYIQRNPQKFKNVAERLT  730 (763)
T ss_pred             HHHHHhcccchHHHHHhhhccCCchheEecchhhhcccCcCccCHHHHHHHHHHHHHHHHhChHHHHHHHHHhc
Confidence            35789999999999999999999999999999999899999999999999999999999999999999999885

>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9

Probab=99.71  E-value=1e-17  Score=120.61  Aligned_cols=61  Identities=30%  Similarity=0.489  Sum_probs=56.1

Q ss_pred             cchhccccccHHHHH----HHHHhCCCCceEEecCCCCCCCCccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484          2 VKILESATDTEGVHT----CLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNE   63 (75)
Q Consensus         2 ~~vvdsatdte~v~~----~~~~ll~~~~YfRfnP~l~~~i~LDe~~~~~L~~L~~~t~~Yi~~n~   63 (75)
                      ..+|++||+|+++|.    .||+++ +.+||||||+++++++|||+++++|.+|+|+|+.||++|+
T Consensus       248 ~~~~~~~t~t~~~~~~~~~~~~~~~-~~~Y~Rfn~~l~~~~~lde~~~~~l~~l~~~~~~yi~~~~  312 (312)
T cd07212         248 KMVVDQCTASDGAPVDRARAWCESI-GIPYFRFSPPLSKDIMLDETDDEDLVNMLWDTEVYIYTHR  312 (312)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHhc-CCceEEeCCccCCCcCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence            357999999999887    578888 8899999999999999999999999999999999999884

PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.

>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8

Probab=99.49  E-value=5.1e-14  Score=100.19  Aligned_cols=60  Identities=63%  Similarity=0.967  Sum_probs=56.5

Q ss_pred             chhccccccHHHHHHHHHhCCCCceEEecCCCCCCCCccCCCHHHHHHHHHHHHHHHHHh
Q psy16484          3 KILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKN   62 (75)
Q Consensus         3 ~vvdsatdte~v~~~~~~ll~~~~YfRfnP~l~~~i~LDe~~~~~L~~L~~~t~~Yi~~n   62 (75)
                      .++.++|++|.+|.++.+++++..||||||++..+++||+++++++++|++.|++|+.+|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~Y~R~~~~~~~~~~ld~~~~~~i~~l~~~~~~yl~~~  308 (308)
T cd07211         249 NLIDSATDTERVHTALDDLLPPDVYFRFNPVMSECVELDETRPEKLDQLQDDTLEYIKRN  308 (308)
T ss_pred             HHHHHccChHHHHHHHHHhcCCCceEEecccccCCCCcccCCHHHHHHHHHHHHHHHhcC
Confidence            478899999999999999998899999999998779999999999999999999999886

PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.

>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria

Probab=99.34  E-value=2.9e-12  Score=92.35  Aligned_cols=64  Identities=22%  Similarity=0.433  Sum_probs=55.4

Q ss_pred             ccHHHHHHHHHhC----CCCceEEecCCCCC-CCCccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy16484         10 DTEGVHTCLSDLL----PQGVYYRFNPYLSE-VPDLDETRPEKLAQLRLDTDIYIRKNEAKFQAAINSK   73 (75)
Q Consensus        10 dte~v~~~~~~ll----~~~~YfRfnP~l~~-~i~LDe~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~L   73 (75)
                      .++.++..+..++    ++..||||||++.. ..+||++++++++.|++.|+.|+++|+++|+++|+.|
T Consensus       261 ~~~~~d~~~~~l~~~~~~~~~Y~Ri~~~l~~~~~~lD~a~~~~i~~L~~~~~~~~~~~~~~i~~~~~~~  329 (329)
T cd07215         261 ASQTVDYQLKQIFDAEGDQQQYLRIQPELEDADPEMDDASPENLEKLREVGQALAEDHKDQLDEIVDRL  329 (329)
T ss_pred             hHHHHHHHHHHHHhhcCCCCceEEEeCCCCCCccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence            3556777777666    45789999999975 4789999999999999999999999999999999876

Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.

>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase

Probab=98.70  E-value=2.5e-08  Score=71.20  Aligned_cols=55  Identities=35%  Similarity=0.404  Sum_probs=47.1

Q ss_pred             chhccccccHHHHHHHHH----hCCCCceEEecCCCC-CCCCccCCCHHHHHHHHHHHHHHH
Q psy16484          3 KILESATDTEGVHTCLSD----LLPQGVYYRFNPYLS-EVPDLDETRPEKLAQLRLDTDIYI   59 (75)
Q Consensus         3 ~vvdsatdte~v~~~~~~----ll~~~~YfRfnP~l~-~~i~LDe~~~~~L~~L~~~t~~Yi   59 (75)
                      .+++++||++..|..+..    ++++..||||||++. ++++|||.  +++..|...|+.|+
T Consensus       249 ~l~~~~~d~~~~~~~~~~~~~~~~~~~~Y~R~n~~~~~~~~~ld~~--~~~~~l~~~t~~yl  308 (309)
T cd07216         249 GLKDLVTDTEAEAKRFSAEHSELDEEGRYFRFNVPHGLEDVGLDEY--EKMEEIVSLTREYL  308 (309)
T ss_pred             HHHHHhhChHHHHHHHHHHHhccCCCCeEEEECCCCCCCCCChhhh--ccHHHHHHHHHHhh
Confidence            478899999999986655    357889999999997 45899996  78999999999997

Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.

>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants

Probab=98.35  E-value=6.8e-07  Score=65.37  Aligned_cols=58  Identities=17%  Similarity=0.218  Sum_probs=47.6

Q ss_pred             ccHHHHHHHHHhCC----CCceEEecCCCCC-C-CCccCCCHHHHHHHHHHHHHHHHHhHHHHH
Q psy16484         10 DTEGVHTCLSDLLP----QGVYYRFNPYLSE-V-PDLDETRPEKLAQLRLDTDIYIRKNEAKFQ   67 (75)
Q Consensus        10 dte~v~~~~~~ll~----~~~YfRfnP~l~~-~-i~LDe~~~~~L~~L~~~t~~Yi~~n~~~l~   67 (75)
                      .++.++.++..+++    +..|+|++|.+.. . .+||++++++++.|+..|+.|+.+|...++
T Consensus       282 ~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~~~~~~~~~~d~~~~~ni~~L~~~a~~~l~~~~~~~~  345 (349)
T cd07214         282 SSDMVDYHLSVIFQALDSEKNYLRIQDDSLTGTASSVDDATEENLEKLVEIGKKLLKKPVSRVN  345 (349)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcEEEEecCCCCCcccCcccCCHHHHHHHHHHHHHHHhCcccccC
Confidence            35677778877773    4679999998653 3 689999999999999999999999886653

Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.

>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17

Probab=97.64  E-value=0.00016  Score=50.29  Aligned_cols=37  Identities=27%  Similarity=0.307  Sum_probs=33.5

Q ss_pred             CCCceEEecCCCCCCC-CccCCCHHHHHHHHHHHHHHH
Q psy16484         23 PQGVYYRFNPYLSEVP-DLDETRPEKLAQLRLDTDIYI   59 (75)
Q Consensus        23 ~~~~YfRfnP~l~~~i-~LDe~~~~~L~~L~~~t~~Yi   59 (75)
                      .+..||||||.+..+. .+|+++++++..|...+++|+
T Consensus       220 ~~~~y~R~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~  257 (258)
T cd07199         220 SKDNYLRINPPLPGPIPALDDASEANLLALDSAAFELI  257 (258)
T ss_pred             CCCeEEEEcCCCCCCcccchhCCHHHHHHHHHHHHHHh
Confidence            5889999999998776 469999999999999999986

Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.

>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase

Probab=97.52  E-value=0.00022  Score=50.65  Aligned_cols=45  Identities=20%  Similarity=0.310  Sum_probs=35.2

Q ss_pred             cHHHHHHHHHhCCCCceEEecCCCCCCCCccCCCHHHHHHHHHHHHHH
Q psy16484         11 TEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIY   58 (75)
Q Consensus        11 te~v~~~~~~ll~~~~YfRfnP~l~~~i~LDe~~~~~L~~L~~~t~~Y   58 (75)
                      .+.++.....++ +..||||||.+...+++  .++++++.|+..|+..
T Consensus       240 ~~~~~~~~~~~~-~~~y~Ri~~~l~~~~~~--~~~~~i~~l~~~~~~~  284 (288)
T cd07213         240 VDAADFQCRQLL-GERYFRLDPVLPANIDL--DDNKQIEELVEIANTV  284 (288)
T ss_pred             HHHHHHHHHHHc-cCcEEEeCCCCCcccCc--cCHHHHHHHHHHHHhc
Confidence            355666777777 88999999999665555  4689999999988753

Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.

>KOG1384|consensus

Probab=86.37  E-value=0.62  Score=34.90  Aligned_cols=45  Identities=13%  Similarity=0.278  Sum_probs=36.3

Q ss_pred             ceEEecCCCCC--CCCccCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy16484         26 VYYRFNPYLSE--VPDLDETRPEKLAQLRLDTDIYIRKNEAKFQAAI   70 (75)
Q Consensus        26 ~YfRfnP~l~~--~i~LDe~~~~~L~~L~~~t~~Yi~~n~~~l~~~~   70 (75)
                      -||||+|.+.+  +-..-+.-++-++.|+.-|.+|..++..+++++-
T Consensus       197 ~f~~~~~~~~~k~d~~~~~~l~~aie~iK~nT~~lakrQ~~~I~~l~  243 (348)
T KOG1384|consen  197 GFKEFYPWLTDKWDLARKELLEKAIEAIKENTRRLAKRQKRKIEKLF  243 (348)
T ss_pred             hhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            49999999977  3344445567889999999999999999998763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	75
1oxw_A	373	Patatin; alpha/beta class fold with approximately	2e-07

>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3 Length = 373

 Score = 45.3 bits (106), Expect = 2e-07
 Identities = 9/77 (11%), Positives = 22/77 (28%), Gaps = 2/77 (2%)

Query: 1   MVKILESATDTEGVHTCLSDLLPQGVYYRFN--PYLSEVPDLDETRPEKLAQLRLDTDIY 58
           M     S      + T    L  +  Y R           ++D+     +  L    +  
Sbjct: 277 MTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENL 336

Query: 59  IRKNEAKFQAAINSKII 75
           ++K  ++       + +
Sbjct: 337 LKKPVSEDNPETYEEAL 353

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	75
1oxw_A	373	Patatin; alpha/beta class fold with approximately	99.1

>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3

Probab=99.10  E-value=8e-11  Score=85.14  Aligned_cols=63  Identities=14%  Similarity=0.167  Sum_probs=52.2

Q ss_pred             HHHHHHHHHhC----CCCceEEecC-CCC-CCCCccCCCHHHHHHHHHHHHHHHHH---------hHHHHHHHHHhhc
Q psy16484         12 EGVHTCLSDLL----PQGVYYRFNP-YLS-EVPDLDETRPEKLAQLRLDTDIYIRK---------NEAKFQAAINSKI   74 (75)
Q Consensus        12 e~v~~~~~~ll----~~~~YfRfnP-~l~-~~i~LDe~~~~~L~~L~~~t~~Yi~~---------n~~~l~~~~~~Ll   74 (75)
                      +.++..+..++    ++..|||||| .+. +..+||+++++++.+|++.|++|+.+         |+++|+++|+.|.
T Consensus       284 ~~~d~~~~~~~~~~~~~~~Y~Ri~~~~l~~~~~~lD~~~~~~l~~L~~~~~~~l~~~~~~~~~~tn~~~l~~~a~~L~  361 (373)
T 1oxw_A          284 YMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENLLKKPVSEDNPETYEEALKRFAKLLS  361 (373)
T ss_dssp             HHHHHHHHHHHHHTTCGGGEEEECCCCBCGGGGCTTCCCHHHHHHHHHHHHHHHTSBSSSSCCCBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCCCCcEEEEeCCCCCCcccccccCCHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence            45555444333    4678999999 575 45799999999999999999999999         9999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	75
d1oxwa_	360	c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solan	5e-08

>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: Patatin
domain: Patatin
species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]

 Score = 45.8 bits (107), Expect = 5e-08
 Identities = 9/77 (11%), Positives = 22/77 (28%), Gaps = 2/77 (2%)

Query: 1   MVKILESATDTEGVHTCLSDLLPQGVYYRFNP--YLSEVPDLDETRPEKLAQLRLDTDIY 58
           M     S      + T    L  +  Y R           ++D+     +  L    +  
Sbjct: 266 MTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENL 325

Query: 59  IRKNEAKFQAAINSKII 75
           ++K  ++       + +
Sbjct: 326 LKKPVSEDNPETYEEAL 342

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	75
d1oxwa_	360	Patatin {Heartleaf nightshade (Solanum cardiophyll	98.83

>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]}

class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: Patatin
domain: Patatin
species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]

Probab=98.83  E-value=1.8e-09  Score=73.76  Aligned_cols=57  Identities=12%  Similarity=0.190  Sum_probs=47.5

Q ss_pred             HHHHhCCCCceEEecCCC-C-CCCCccCCCHHHHHHHHHHHHHHHHH---------hHHHHHHHHHhh
Q psy16484         17 CLSDLLPQGVYYRFNPYL-S-EVPDLDETRPEKLAQLRLDTDIYIRK---------NEAKFQAAINSK   73 (75)
Q Consensus        17 ~~~~ll~~~~YfRfnP~l-~-~~i~LDe~~~~~L~~L~~~t~~Yi~~---------n~~~l~~~~~~L   73 (75)
                      .+....++..||||||.. . ....||++++++|+.|++.|++|+.+         +++.++++|+.|
T Consensus       282 ~~~~~~~~~~Y~R~~~~~~~~~~~~lDd~s~~~l~~l~~~g~~~~~~~~~~~~~~~~~~~L~~~~~~L  349 (360)
T d1oxwa_         282 AFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENLLKKPVSEDNPETYEEALKRFAKLL  349 (360)
T ss_dssp             HHHHTTCGGGEEEECCCCBCGGGGCTTCCCHHHHHHHHHHHHHHHTSBSSSSCCCBHHHHHHHHHHHH
T ss_pred             HHHhcCCCCcEEEEcCCccccccccccCCCHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence            455555677899999854 3 44699999999999999999999986         788999999877