Psyllid ID: psy16497

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQTGVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFSSNHIENSSHVTGIHWYPKLLYSMSDYFIPSAWMNND
Secondary Structure (PSIPRED)
cccccEEEEEEccccccccccccEEEccccccccEEEEEEccEEEEEEEEEEEEEEEEEEEEcccccccEEEccEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEcHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEcccccccccccccEEEHHccccccEEEEEccccEEEEEEEEEEEEEcccEEcccccccEEEEccEEEEHHHHEcccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mtpshlilrwhrpnaksiLSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQtgvyaplttsgtiVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFssnhiensshvtgihwypkLLYSMsdyfipsawmnnd
Flexible Loop (DISEMBL)
mtpshlilrwhrpnaksILSDIEYTYAErvrvndsiivhkngkayVERVTRLENVIQTGVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFSSNHIENSSHVTGIHWYPKLLYSMSDYFIPSAWMNND
Low Complexity Region (SEG)
MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQTGVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFSSNHIENSSHVTGIHWYPKLLYSMSDYFIPSAWMNND
Disordered region (IsUnstruct)
*****LILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQTGVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFSSNHIENSSHVTGIHWYPKLLYSMSDYFIPSAW****
Disordered Region (DISOPRED)
MTPSHLILRWHRP**********YTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQTGVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFSSNHIENSSHVTGIHWYPKLLYSMSDYFIPSAWMN**
Disordered Region (DISEMBL)
MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQTGVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFSSNHIENSSHVTGIHWYPKLLYSMSDYFIPSAWMNND
Disordered Region (DISPRO)
*TPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQTGVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFSSNHIENSSHVTGIHWYPKLLYSMSDYFIPSAW****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQTGVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFSSNHIENSSHVTGIHWYPKLLYSMSDYFIPSAWMNND
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
B4K4M0	476	Protein hedgehog OS=Droso	N/A	N/A	0.958	0.287	0.380	6e-22
B4G2I8	481	Protein hedgehog OS=Droso	N/A	N/A	0.958	0.284	0.383	6e-22
Q29AA9	481	Protein hedgehog OS=Droso	yes	N/A	0.958	0.284	0.376	7e-22
B3LV44	472	Protein hedgehog OS=Droso	N/A	N/A	0.958	0.290	0.370	1e-21
B4NJP3	469	Protein hedgehog OS=Droso	N/A	N/A	0.937	0.285	0.367	2e-21
B3P7F8	465	Protein hedgehog OS=Droso	N/A	N/A	0.958	0.294	0.348	3e-21
B4PN49	465	Protein hedgehog OS=Droso	N/A	N/A	0.958	0.294	0.375	3e-21
Q02936	471	Protein hedgehog OS=Droso	yes	N/A	0.958	0.290	0.368	3e-21
B4HFB7	465	Protein hedgehog OS=Droso	N/A	N/A	0.958	0.294	0.368	3e-21
Q61488	396	Desert hedgehog protein O	yes	N/A	0.902	0.325	0.355	2e-20

>sp|B4K4M0|HH_DROMO Protein hedgehog OS=Drosophila mojavensis GN=hh PE=3 SV=1

 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 85/155 (54%), Gaps = 18/155 (11%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHK-NGKAYVERVTRLENVIQTG 59
           +TP+HLI  W     ++    +E+ +A+RV     ++VH   G+   +RV R+++V   G
Sbjct: 327 VTPAHLIAVW-----QAERQTLEFVFADRVEELSQVLVHDATGELRPQRVLRVDSVQSRG 381

Query: 60  VYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLV-------NLFSSNHIE 112
           V APLT  GTIVVN+V ASCYAVI +Q LAH    P+RL+ +L         L S+    
Sbjct: 382 VVAPLTREGTIVVNSVAASCYAVISSQSLAHWGLAPMRLWSTLQSWMPAKGQLRSAQDKP 441

Query: 113 NSSHVT-----GIHWYPKLLYSMSDYFIPSAWMNN 142
                T     GIHWY   LY + DY +P +W ++
Sbjct: 442 TPKDATAQQQNGIHWYANALYKVKDYVLPQSWRHD 476

The hedgehog protein C-product, which mediates the autocatalytic activity, has no signaling activity.
Drosophila mojavensis (taxid: 7230)

>sp|B4G2I8|HH_DROPE Protein hedgehog OS=Drosophila persimilis GN=hh PE=3 SV=1

 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 59/154 (38%), Positives = 85/154 (55%), Gaps = 17/154 (11%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH--KNGKAYVERVTRLENVIQT 58
           +TP+HLI  WH P  + +    +Y +A+RV   + ++V   + G+   +RV R+ +V   
Sbjct: 333 VTPAHLISVWH-PERQQL----DYVFADRVEELNYVLVRDPQTGELRPQRVVRVGSVRSK 387

Query: 59  GVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFSSNHIENSSHVT 118
           GV APLT  GTIVVN+V ASCYAVID+Q LAH    P+R+   L +   +     SS   
Sbjct: 388 GVVAPLTREGTIVVNSVAASCYAVIDSQSLAHWGLAPMRILAMLQSWMPAKDQLRSSQTE 447

Query: 119 ----------GIHWYPKLLYSMSDYFIPSAWMNN 142
                     GIHWY   LY + DY +P +W ++
Sbjct: 448 GVVSRAEQQNGIHWYANALYKVKDYVLPKSWRHD 481

The hedgehog protein C-product, which mediates the autocatalytic activity, has no signaling activity.

Drosophila persimilis (taxid: 7234)

>sp|Q29AA9|HH_DROPS Protein hedgehog OS=Drosophila pseudoobscura pseudoobscura GN=hh-1 PE=3 SV=2

 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 84/154 (54%), Gaps = 17/154 (11%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH--KNGKAYVERVTRLENVIQT 58
           +TP+HLI  WH    +     ++Y +A+RV   + ++V   + G+   +RV R+ +V   
Sbjct: 333 VTPAHLISVWHPERQQ-----LDYVFADRVEELNYVLVRDPQTGELRPQRVVRVGSVRSK 387

Query: 59  GVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFSSNHIENSSHVT 118
           GV APLT  GTIVVN+V ASCYAVID+Q LAH    P+R+   L +   +     SS   
Sbjct: 388 GVVAPLTREGTIVVNSVAASCYAVIDSQSLAHWGLAPMRILAMLQSWMPAKDQLRSSQTE 447

Query: 119 ----------GIHWYPKLLYSMSDYFIPSAWMNN 142
                     GIHWY   LY + DY +P +W ++
Sbjct: 448 GVVSRAEQQNGIHWYANALYKVKDYVLPKSWRHD 481

The hedgehog protein C-product, which mediates the autocatalytic activity, has no signaling activity.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B3LV44|HH_DROAN Protein hedgehog OS=Drosophila ananassae GN=hh PE=3 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 91/154 (59%), Gaps = 17/154 (11%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIV--HKNGKAYVERVTRLENVIQT 58
           +TP+HL+  W +P  +    ++ +T+A+R+     ++V   + G+   ++V ++E+V   
Sbjct: 324 VTPAHLVSVW-QPERQ----ELTFTFADRIEERQHVLVRNEETGELRPDQVIKVESVRSM 378

Query: 59  GVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLF--------SSNH 110
           GV APLT  GTIVVN+V ASCYAVI++Q LAH    P+RL  +L            S +H
Sbjct: 379 GVVAPLTREGTIVVNSVAASCYAVINSQSLAHWGLAPMRLLSTLEAWLPAKDQLRSSKDH 438

Query: 111 IENSS--HVTGIHWYPKLLYSMSDYFIPSAWMNN 142
            ++SS     GIHWY + LY + DY +P +W ++
Sbjct: 439 PKDSSAERQNGIHWYAEALYKIKDYVLPKSWRHD 472

The hedgehog protein C-product, which mediates the autocatalytic activity, has no signaling activity.

Drosophila ananassae (taxid: 7217)

>sp|B4NJP3|HH_DROWI Protein hedgehog OS=Drosophila willistoni GN=hh PE=3 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 21/155 (13%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHK--NGKAYVERVTRLENVIQT 58
           +TP+HLI  W +P+++ +     Y +A+RV   + ++V+    G+   +RV ++ +V   
Sbjct: 317 VTPAHLISVW-QPDSQQL----NYVFADRVEEMNYVLVNDVVTGELLPQRVIKVTSVHSK 371

Query: 59  GVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFSS---------- 108
           GV APLT  GTIVVN+V ASCYAVI++Q LAH    P+RL  SL +L  +          
Sbjct: 372 GVVAPLTREGTIVVNSVVASCYAVINSQSLAHWGLAPMRLLSSLQSLMPAKGQLRTTSSA 431

Query: 109 ----NHIENSSHVTGIHWYPKLLYSMSDYFIPSAW 139
                 +  +    GIHWY   LY + DY +P +W
Sbjct: 432 TQPTKEVSRAEQQNGIHWYANALYKVKDYVLPKSW 466

The hedgehog protein C-product, which mediates the autocatalytic activity, has no signaling activity.

Drosophila willistoni (taxid: 7260)

>sp|B3P7F8|HH_DROER Protein hedgehog OS=Drosophila erecta GN=hh PE=3 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 15/152 (9%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH--KNGKAYVERVTRLENVIQT 58
           +TP+HL+  W   + K     + + +A+RV   + ++V   + G+   +RV ++ +V   
Sbjct: 319 VTPAHLVSVWQAESQK-----LTFVFADRVEEKNQVLVRDVETGELRPQRVVKVGSVRSK 373

Query: 59  GVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFSSNH-------- 110
           GV APLT  GTIVVN+V ASCYAVI++Q LAH    P+RL  +L     +          
Sbjct: 374 GVVAPLTREGTIVVNSVAASCYAVINSQSLAHWGLAPMRLLSTLEAWLPAKEQLHSSPKV 433

Query: 111 IENSSHVTGIHWYPKLLYSMSDYFIPSAWMNN 142
           +  +    GIHWY   LY + DY +P +W ++
Sbjct: 434 VTTAEQQNGIHWYANALYKVKDYVLPQSWRHD 465

The hedgehog protein C-product, which mediates the autocatalytic activity, has no signaling activity.

Drosophila erecta (taxid: 7220)

>sp|B4PN49|HH_DROYA Protein hedgehog OS=Drosophila yakuba GN=hh PE=3 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 87/152 (57%), Gaps = 15/152 (9%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH--KNGKAYVERVTRLENVIQT 58
           +TP+HLI  W   + K     + + +A+R+   + ++V   + G+   +RV ++ +V   
Sbjct: 319 VTPAHLISVWQPESQK-----LTFVFADRIEEKNQVLVRDSETGELRPQRVIKVGSVRSK 373

Query: 59  GVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSL-------VNLFSSNHI 111
           GV APLT  GTIVVN+V ASCYAVI++Q LAH    P+RL  +L         L SS  +
Sbjct: 374 GVVAPLTREGTIVVNSVAASCYAVINSQSLAHWGLAPMRLLSTLEAWLPAKEQLHSSPKV 433

Query: 112 ENSS-HVTGIHWYPKLLYSMSDYFIPSAWMNN 142
            +S+    GIHWY   LY + DY +P +W ++
Sbjct: 434 VSSAEQQNGIHWYANALYKVKDYVLPQSWRHD 465

The hedgehog protein C-product, which mediates the autocatalytic activity, has no signaling activity.

Drosophila yakuba (taxid: 7245)

>sp|Q02936|HH_DROME Protein hedgehog OS=Drosophila melanogaster GN=hh PE=1 SV=4

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 15/152 (9%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH--KNGKAYVERVTRLENVIQT 58
           +TP+HL+  W   + K     + + +A+R+   + ++V   + G+   +RV ++ +V   
Sbjct: 325 VTPAHLVSVWQPESQK-----LTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSK 379

Query: 59  GVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSL-------VNLFSSNHI 111
           GV APLT  GTIVVN+V ASCYAVI++Q LAH    P+RL  +L         L SS  +
Sbjct: 380 GVVAPLTREGTIVVNSVAASCYAVINSQSLAHWGLAPMRLLSTLEAWLPAKEQLHSSPKV 439

Query: 112 ENSSHVT-GIHWYPKLLYSMSDYFIPSAWMNN 142
            +S+    GIHWY   LY + DY +P +W ++
Sbjct: 440 VSSAQQQNGIHWYANALYKVKDYVLPQSWRHD 471

The hedgehog protein C-product, which mediates the autocatalytic activity, has no signaling activity.

Drosophila melanogaster (taxid: 7227)

>sp|B4HFB7|HH_DROSE Protein hedgehog OS=Drosophila sechellia GN=hh PE=3 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 15/152 (9%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH--KNGKAYVERVTRLENVIQT 58
           +TP+HL+  W   + K     + + +A+R+   + ++V   + G+   +RV ++ +V   
Sbjct: 319 VTPAHLVSVWQPESQK-----LTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSK 373

Query: 59  GVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSL-------VNLFSSNHI 111
           GV APLT  GTIVVN+V ASCYAVI++Q LAH    P+RL  +L         L SS  +
Sbjct: 374 GVVAPLTREGTIVVNSVAASCYAVINSQSLAHWGLAPMRLLSTLEAWLPAKEQLHSSPKV 433

Query: 112 ENSSHVT-GIHWYPKLLYSMSDYFIPSAWMNN 142
            +S+    GIHWY   LY + DY +P +W ++
Sbjct: 434 VSSAQQQNGIHWYANALYKVKDYVLPQSWRHD 465

The hedgehog protein C-product, which mediates the autocatalytic activity, has no signaling activity.

Drosophila sechellia (taxid: 7238)

>sp|Q61488|DHH_MOUSE Desert hedgehog protein OS=Mus musculus GN=Dhh PE=1 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 6/135 (4%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQTGV 60
           +TP HL+     P       D    +A R+R  DS++          RV R+      GV
Sbjct: 267 LTPWHLVFAARGPAPAP--GDFAPVFARRLRAGDSVLAPGGDALQPARVARVAREEAVGV 324

Query: 61  YAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFSSNHIENSSHVTGI 120
           +APLT  GT++VN+V ASCYAV+++   AH +F P+RL H+L  L     ++     TG+
Sbjct: 325 FAPLTAHGTLLVNDVLASCYAVLESHQWAHRAFAPLRLLHALGALLPGGAVQP----TGM 380

Query: 121 HWYPKLLYSMSDYFI 135
           HWY +LLY +++  +
Sbjct: 381 HWYSRLLYRLAEELM 395

Intercellular signal essential for a variety of patterning events during development. May function as a spermatocyte survival factor in the testes. Essential for testes development.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
347965843	509	AGAP001412-PA [Anopheles gambiae str. PE	0.944	0.265	0.435	7e-27
312379159	251	hypothetical protein AND_09060 [Anophele	0.944	0.537	0.397	4e-26
157114095	418	hedgehog [Aedes aegypti] gi|108877449|gb	0.944	0.322	0.426	2e-25
170035433	424	hedgehog [Culex quinquefasciatus] gi|167	0.944	0.318	0.384	2e-24
193617681	437	PREDICTED: protein hedgehog-like [Acyrth	0.951	0.311	0.439	5e-23
195109931	476	GI24573 [Drosophila mojavensis] gi|25709	0.958	0.287	0.380	4e-20
195144126	481	GL23598 [Drosophila persimilis] gi|25709	0.958	0.284	0.383	4e-20
198451270	481	GA18321 [Drosophila pseudoobscura pseudo	0.958	0.284	0.376	5e-20
307175353	316	Sonic hedgehog protein [Camponotus flori	0.902	0.408	0.394	6e-20
167234445	392	hedgehog precursor [Tribolium castaneum]	0.846	0.308	0.395	7e-20

>gi|347965843|ref|XP_321721.5| AGAP001412-PA [Anopheles gambiae str. PEST] gi|333470328|gb|EAA01079.5| AGAP001412-PA [Anopheles gambiae str. PEST]

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 61/140 (43%), Positives = 84/140 (60%), Gaps = 5/140 (3%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQTGV 60
           +TP+HL++ W R       S+  + +A+RVR  D I+VH  G      V R+   +  GV
Sbjct: 373 VTPAHLVMVWRRER-----SETRFVFADRVREGDHILVHVAGSLEPRAVHRISATLAEGV 427

Query: 61  YAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFSSNHIENSSHVTGI 120
           YAPLT  GTIVV+++ ASCYA+ID+Q +AH SF+P RL   +  LF      +     GI
Sbjct: 428 YAPLTGEGTIVVDSIAASCYALIDSQTVAHWSFLPYRLAEKVSALFDRTDSLSLPRHEGI 487

Query: 121 HWYPKLLYSMSDYFIPSAWM 140
           HWY K LY++ DY IPS W+
Sbjct: 488 HWYAKSLYTIKDYLIPSNWL 507

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312379159|gb|EFR25527.1| hypothetical protein AND_09060 [Anopheles darlingi]

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 93/151 (61%), Gaps = 16/151 (10%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAY--------VERVTRL 52
           +TP+HL++ W + +A++      + +A+RVR  D ++V + G A           RV R+
Sbjct: 104 VTPAHLVMVWRKEHAET-----RFVFADRVREGDHVLVQQAGTARHAEGPVLEPRRVHRI 158

Query: 53  ENVIQTGVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFSSNHIE 112
             ++  GVYAPLT  GTIVV+ + ASCYA+ID+Q +AHLSF+P R+   L +LF    + 
Sbjct: 159 SAMLADGVYAPLTREGTIVVDTIAASCYALIDSQTVAHLSFLPYRMVEKLWSLFERASVT 218

Query: 113 NSSHV---TGIHWYPKLLYSMSDYFIPSAWM 140
           +S  +    GIHWY K LY++ DY +P +W+
Sbjct: 219 DSLSLPRHEGIHWYAKSLYTIKDYLVPPSWL 249

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157114095|ref|XP_001657979.1| hedgehog [Aedes aegypti] gi|108877449|gb|EAT41674.1| AAEL006708-PA [Aedes aegypti]

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/143 (42%), Positives = 92/143 (64%), Gaps = 8/143 (5%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQTGV 60
           +TP+HL++ W +   KS+     Y +A+R++  D I+V+ N      +V R+   +  GV
Sbjct: 279 VTPAHLVMVWQKNEGKSL-----YLFADRIQEGDYILVNINSTIEPRKVLRISAKLSQGV 333

Query: 61  YAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLF-SSNHIENSS--HV 117
           YAPLT  GTIVV+++ ASCYA+ID+Q +AHLSF+P R    ++NLF SS+   N S    
Sbjct: 334 YAPLTREGTIVVDSIAASCYALIDSQSVAHLSFLPYRAVQKIMNLFRSSSQSRNLSLPRH 393

Query: 118 TGIHWYPKLLYSMSDYFIPSAWM 140
            GI+WY K LY++ D+ IP+ W+
Sbjct: 394 GGINWYAKTLYAIKDFVIPNDWL 416

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170035433|ref|XP_001845574.1| hedgehog [Culex quinquefasciatus] gi|167877390|gb|EDS40773.1| hedgehog [Culex quinquefasciatus]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 91/143 (63%), Gaps = 8/143 (5%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQTGV 60
           +TP+HL++ W +   +S      Y +A+R++  D ++V+ +      +V R+   +  GV
Sbjct: 285 VTPAHLVMVWQKEIGES-----RYLFADRIQEGDYVLVNIDNNLEPRKVLRISAKLSQGV 339

Query: 61  YAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLF---SSNHIENSSHV 117
           YAPLT+ GT++V+++ ASCYA+ID+Q +AHLSF+P R+   +++LF   S +H       
Sbjct: 340 YAPLTSEGTVLVDSIAASCYALIDSQSVAHLSFLPYRVVQKVMDLFKFSSQSHSLGLPRH 399

Query: 118 TGIHWYPKLLYSMSDYFIPSAWM 140
            GIHWY K LYS+ DY +P+ W+
Sbjct: 400 EGIHWYAKSLYSIKDYVLPTDWL 422

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193617681|ref|XP_001943707.1| PREDICTED: protein hedgehog-like [Acyrthosiphon pisum]

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 99/164 (60%), Gaps = 28/164 (17%)

Query: 2   TPSHLILRWHRPNAKSILSDIEYT---YAERVRVNDSIIVHKNG-----KAYVERVTRLE 53
           TP+HL+LRW +P      S I Y    YA+ VRVND+++   NG     +   ERV  + 
Sbjct: 276 TPTHLVLRWEKPER----SQIRYANPVYAKSVRVNDTLLTVINGDRGQLRLRAERVVAVS 331

Query: 54  NVIQTGVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPV---------------RL 98
              + G+YAPLT  GT+VV++V ASCYAVID+Q+LAHL+F+PV               RL
Sbjct: 332 RTEKIGLYAPLTVDGTVVVDDVVASCYAVIDSQWLAHLAFLPVRALAAVRTSLYSLVWRL 391

Query: 99  YHSLVNLFS-SNHIENSSHVTGIHWYPKLLYSMSDYFIPSAWMN 141
            H L +  S S  I+      GIHWYP++LY++SDY IP++WM+
Sbjct: 392 GHPLHDAPSLSPVIDAVQPADGIHWYPRMLYAISDYAIPASWMD 435

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195109931|ref|XP_001999535.1| GI24573 [Drosophila mojavensis] gi|257096524|sp|B4K4M0.1|HH_DROMO RecName: Full=Protein hedgehog; Contains: RecName: Full=Protein hedgehog N-product; Contains: RecName: Full=Protein hedgehog C-product; Flags: Precursor gi|193916129|gb|EDW14996.1| GI24573 [Drosophila mojavensis]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 85/155 (54%), Gaps = 18/155 (11%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHK-NGKAYVERVTRLENVIQTG 59
           +TP+HLI  W     ++    +E+ +A+RV     ++VH   G+   +RV R+++V   G
Sbjct: 327 VTPAHLIAVW-----QAERQTLEFVFADRVEELSQVLVHDATGELRPQRVLRVDSVQSRG 381

Query: 60  VYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLV-------NLFSSNHIE 112
           V APLT  GTIVVN+V ASCYAVI +Q LAH    P+RL+ +L         L S+    
Sbjct: 382 VVAPLTREGTIVVNSVAASCYAVISSQSLAHWGLAPMRLWSTLQSWMPAKGQLRSAQDKP 441

Query: 113 NSSHVT-----GIHWYPKLLYSMSDYFIPSAWMNN 142
                T     GIHWY   LY + DY +P +W ++
Sbjct: 442 TPKDATAQQQNGIHWYANALYKVKDYVLPQSWRHD 476

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195144126|ref|XP_002013047.1| GL23598 [Drosophila persimilis] gi|257096525|sp|B4G2I8.1|HH_DROPE RecName: Full=Protein hedgehog; Contains: RecName: Full=Protein hedgehog N-product; Contains: RecName: Full=Protein hedgehog C-product; Flags: Precursor gi|194101990|gb|EDW24033.1| GL23598 [Drosophila persimilis]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/154 (38%), Positives = 85/154 (55%), Gaps = 17/154 (11%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH--KNGKAYVERVTRLENVIQT 58
           +TP+HLI  WH P  + +    +Y +A+RV   + ++V   + G+   +RV R+ +V   
Sbjct: 333 VTPAHLISVWH-PERQQL----DYVFADRVEELNYVLVRDPQTGELRPQRVVRVGSVRSK 387

Query: 59  GVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFSSNHIENSSHVT 118
           GV APLT  GTIVVN+V ASCYAVID+Q LAH    P+R+   L +   +     SS   
Sbjct: 388 GVVAPLTREGTIVVNSVAASCYAVIDSQSLAHWGLAPMRILAMLQSWMPAKDQLRSSQTE 447

Query: 119 ----------GIHWYPKLLYSMSDYFIPSAWMNN 142
                     GIHWY   LY + DY +P +W ++
Sbjct: 448 GVVSRAEQQNGIHWYANALYKVKDYVLPKSWRHD 481

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198451270|ref|XP_001358303.2| GA18321 [Drosophila pseudoobscura pseudoobscura] gi|198476984|ref|XP_002136818.1| GA29124 [Drosophila pseudoobscura pseudoobscura] gi|257096610|sp|Q29AA9.2|HH_DROPS RecName: Full=Protein hedgehog; Contains: RecName: Full=Protein hedgehog N-product; Contains: RecName: Full=Protein hedgehog C-product; Flags: Precursor gi|198131411|gb|EAL27441.2| GA18321 [Drosophila pseudoobscura pseudoobscura] gi|198145143|gb|EDY71847.1| GA29124 [Drosophila pseudoobscura pseudoobscura]

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 84/154 (54%), Gaps = 17/154 (11%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH--KNGKAYVERVTRLENVIQT 58
           +TP+HLI  WH    +     ++Y +A+RV   + ++V   + G+   +RV R+ +V   
Sbjct: 333 VTPAHLISVWHPERQQ-----LDYVFADRVEELNYVLVRDPQTGELRPQRVVRVGSVRSK 387

Query: 59  GVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFSSNHIENSSHVT 118
           GV APLT  GTIVVN+V ASCYAVID+Q LAH    P+R+   L +   +     SS   
Sbjct: 388 GVVAPLTREGTIVVNSVAASCYAVIDSQSLAHWGLAPMRILAMLQSWMPAKDQLRSSQTE 447

Query: 119 ----------GIHWYPKLLYSMSDYFIPSAWMNN 142
                     GIHWY   LY + DY +P +W ++
Sbjct: 448 GVVSRAEQQNGIHWYANALYKVKDYVLPKSWRHD 481

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175353|gb|EFN65372.1| Sonic hedgehog protein [Camponotus floridanus]

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 91/152 (59%), Gaps = 23/152 (15%)

Query: 1   MTPSHLILRWHRP-NAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVER---VTRLENVI 56
           +TP+HL+     P   +S +   +    +RV V+D   V +NG     R   V   + V+
Sbjct: 168 LTPAHLV-----PVEGRSSIFAAKVQLGDRVLVSDP--VARNGTDSSPRWDKVVETKLVL 220

Query: 57  QTGVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFSSNHIENSSH 116
           + GVYAPLTT GTI+V++V ASCYAVID+Q +AH +F+P+R++ S+ + F    ++++SH
Sbjct: 221 EKGVYAPLTTEGTIIVDDVVASCYAVIDSQTVAHYAFLPLRVWSSVTSFF-VQRLDDASH 279

Query: 117 V-----------TGIHWYPKLLYSMSDYFIPS 137
           V            GIHWY  +LYS+S Y +PS
Sbjct: 280 VRGQNEDSRPTKEGIHWYASMLYSLSTYVLPS 311

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|167234445|ref|NP_001107837.1| hedgehog precursor [Tribolium castaneum]

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 85/139 (61%), Gaps = 18/139 (12%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYV--ERVTRLENVIQT 58
           +TPSHL+          +L D    YA++++  D ++V  N K  +  E++ RLE V ++
Sbjct: 265 VTPSHLL----------VLDDRTMKYAQKLQPGDFLLVSDNAKNALISEKIVRLEAVWRS 314

Query: 59  GVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFSSNHIENSSHVT 118
           GV+APLT  GT+VVN+V ASCYA ID+Q+LAH +F P+R    +  L+ S   +      
Sbjct: 315 GVFAPLTGVGTLVVNDVVASCYATIDSQWLAHWAFAPIRW---VAKLWDSGLRKPG---V 368

Query: 119 GIHWYPKLLYSMSDYFIPS 137
           G+ WY +LLY+ +D+ +PS
Sbjct: 369 GVFWYARLLYATADFVLPS 387

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
UNIPROTKB|B3LV44	472	hh "Protein hedgehog" [Drosoph	0.958	0.290	0.383	2.7e-21
UNIPROTKB|B4G2I8	481	hh "Protein hedgehog" [Drosoph	0.958	0.284	0.389	2.8e-21
UNIPROTKB|Q29AA9	481	hh-1 "Protein hedgehog" [Droso	0.958	0.284	0.389	2.8e-21
UNIPROTKB|B4HFB7	465	hh "Protein hedgehog" [Drosoph	0.958	0.294	0.368	9e-21
UNIPROTKB|B4PN49	465	hh "Protein hedgehog" [Drosoph	0.958	0.294	0.375	9e-21
FB|FBgn0004644	471	hh "hedgehog" [Drosophila mela	0.958	0.290	0.368	9.4e-21
UNIPROTKB|B4NJP3	469	hh "Protein hedgehog" [Drosoph	0.937	0.285	0.380	1.2e-20
UNIPROTKB|B4K4M0	476	hh "Protein hedgehog" [Drosoph	0.958	0.287	0.380	1.3e-20
UNIPROTKB|B3P7F8	465	hh "Protein hedgehog" [Drosoph	0.958	0.294	0.368	1.9e-20
UNIPROTKB|B4LZT9	483	hh "Protein hedgehog" [Drosoph	0.958	0.283	0.354	2.7e-19

UNIPROTKB|B3LV44 hh "Protein hedgehog" [Drosophila ananassae (taxid:7217)]

 Score = 255 (94.8 bits), Expect = 2.7e-21, P = 2.7e-21
 Identities = 59/154 (38%), Positives = 93/154 (60%)

Query:     1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH--KNGKAYVERVTRLENVIQT 58
             +TP+HL+  W +P  +    ++ +T+A+R+     ++V   + G+   ++V ++E+V   
Sbjct:   324 VTPAHLVSVW-QPERQ----ELTFTFADRIEERQHVLVRNEETGELRPDQVIKVESVRSM 378

Query:    59 GVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLV-------NLFSS-NH 110
             GV APLT  GTIVVN+V ASCYAVI++Q LAH    P+RL  +L         L SS +H
Sbjct:   379 GVVAPLTREGTIVVNSVAASCYAVINSQSLAHWGLAPMRLLSTLEAWLPAKDQLRSSKDH 438

Query:   111 IENSS--HVTGIHWYPKLLYSMSDYFIPSAWMNN 142
              ++SS     GIHWY + LY + DY +P +W ++
Sbjct:   439 PKDSSAERQNGIHWYAEALYKIKDYVLPKSWRHD 472

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007367 "segment polarity determination" evidence=ISS

GO:0045168 "cell-cell signaling involved in cell fate commitment" evidence=ISS

UNIPROTKB|B4G2I8 hh "Protein hedgehog" [Drosophila persimilis (taxid:7234)]

 Score = 255 (94.8 bits), Expect = 2.8e-21, P = 2.8e-21
 Identities = 60/154 (38%), Positives = 87/154 (56%)

Query:     1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH--KNGKAYVERVTRLENVIQT 58
             +TP+HLI  WH P  + +    +Y +A+RV   + ++V   + G+   +RV R+ +V   
Sbjct:   333 VTPAHLISVWH-PERQQL----DYVFADRVEELNYVLVRDPQTGELRPQRVVRVGSVRSK 387

Query:    59 GVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVN-------LFSSNH- 110
             GV APLT  GTIVVN+V ASCYAVID+Q LAH    P+R+   L +       L SS   
Sbjct:   388 GVVAPLTREGTIVVNSVAASCYAVIDSQSLAHWGLAPMRILAMLQSWMPAKDQLRSSQTE 447

Query:   111 --IENSSHVTGIHWYPKLLYSMSDYFIPSAWMNN 142
               +  +    GIHWY   LY + DY +P +W ++
Sbjct:   448 GVVSRAEQQNGIHWYANALYKVKDYVLPKSWRHD 481

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007367 "segment polarity determination" evidence=ISS

GO:0045168 "cell-cell signaling involved in cell fate commitment" evidence=ISS

UNIPROTKB|Q29AA9 hh-1 "Protein hedgehog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 255 (94.8 bits), Expect = 2.8e-21, P = 2.8e-21
 Identities = 60/154 (38%), Positives = 87/154 (56%)

Query:     1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH--KNGKAYVERVTRLENVIQT 58
             +TP+HLI  WH P  + +    +Y +A+RV   + ++V   + G+   +RV R+ +V   
Sbjct:   333 VTPAHLISVWH-PERQQL----DYVFADRVEELNYVLVRDPQTGELRPQRVVRVGSVRSK 387

Query:    59 GVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVN-------LFSSNH- 110
             GV APLT  GTIVVN+V ASCYAVID+Q LAH    P+R+   L +       L SS   
Sbjct:   388 GVVAPLTREGTIVVNSVAASCYAVIDSQSLAHWGLAPMRILAMLQSWMPAKDQLRSSQTE 447

Query:   111 --IENSSHVTGIHWYPKLLYSMSDYFIPSAWMNN 142
               +  +    GIHWY   LY + DY +P +W ++
Sbjct:   448 GVVSRAEQQNGIHWYANALYKVKDYVLPKSWRHD 481

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007367 "segment polarity determination" evidence=ISS

GO:0045168 "cell-cell signaling involved in cell fate commitment" evidence=ISS

UNIPROTKB|B4HFB7 hh "Protein hedgehog" [Drosophila sechellia (taxid:7238)]

 Score = 250 (93.1 bits), Expect = 9.0e-21, P = 9.0e-21
 Identities = 56/152 (36%), Positives = 89/152 (58%)

Query:     1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH--KNGKAYVERVTRLENVIQT 58
             +TP+HL+  W +P ++ +     + +A+R+   + ++V   + G+   +RV ++ +V   
Sbjct:   319 VTPAHLVSVW-QPESQKLT----FVFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSK 373

Query:    59 GVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLV-------NLFSSNHI 111
             GV APLT  GTIVVN+V ASCYAVI++Q LAH    P+RL  +L         L SS  +
Sbjct:   374 GVVAPLTREGTIVVNSVAASCYAVINSQSLAHWGLAPMRLLSTLEAWLPAKEQLHSSPKV 433

Query:   112 ENSSHV-TGIHWYPKLLYSMSDYFIPSAWMNN 142
              +S+    GIHWY   LY + DY +P +W ++
Sbjct:   434 VSSAQQQNGIHWYANALYKVKDYVLPQSWRHD 465

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007367 "segment polarity determination" evidence=ISS

GO:0045168 "cell-cell signaling involved in cell fate commitment" evidence=ISS

UNIPROTKB|B4PN49 hh "Protein hedgehog" [Drosophila yakuba (taxid:7245)]

 Score = 250 (93.1 bits), Expect = 9.0e-21, P = 9.0e-21
 Identities = 57/152 (37%), Positives = 89/152 (58%)

Query:     1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH--KNGKAYVERVTRLENVIQT 58
             +TP+HLI  W +P ++ +     + +A+R+   + ++V   + G+   +RV ++ +V   
Sbjct:   319 VTPAHLISVW-QPESQKLT----FVFADRIEEKNQVLVRDSETGELRPQRVIKVGSVRSK 373

Query:    59 GVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLV-------NLFSSNHI 111
             GV APLT  GTIVVN+V ASCYAVI++Q LAH    P+RL  +L         L SS  +
Sbjct:   374 GVVAPLTREGTIVVNSVAASCYAVINSQSLAHWGLAPMRLLSTLEAWLPAKEQLHSSPKV 433

Query:   112 ENSSHV-TGIHWYPKLLYSMSDYFIPSAWMNN 142
              +S+    GIHWY   LY + DY +P +W ++
Sbjct:   434 VSSAEQQNGIHWYANALYKVKDYVLPQSWRHD 465

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007367 "segment polarity determination" evidence=ISS

GO:0045168 "cell-cell signaling involved in cell fate commitment" evidence=ISS

FB|FBgn0004644 hh "hedgehog" [Drosophila melanogaster (taxid:7227)]

 Score = 250 (93.1 bits), Expect = 9.4e-21, P = 9.4e-21
 Identities = 56/152 (36%), Positives = 89/152 (58%)

Query:     1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH--KNGKAYVERVTRLENVIQT 58
             +TP+HL+  W +P ++ +     + +A+R+   + ++V   + G+   +RV ++ +V   
Sbjct:   325 VTPAHLVSVW-QPESQKLT----FVFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSK 379

Query:    59 GVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLV-------NLFSSNHI 111
             GV APLT  GTIVVN+V ASCYAVI++Q LAH    P+RL  +L         L SS  +
Sbjct:   380 GVVAPLTREGTIVVNSVAASCYAVINSQSLAHWGLAPMRLLSTLEAWLPAKEQLHSSPKV 439

Query:   112 ENSSHV-TGIHWYPKLLYSMSDYFIPSAWMNN 142
              +S+    GIHWY   LY + DY +P +W ++
Sbjct:   440 VSSAQQQNGIHWYANALYKVKDYVLPQSWRHD 471

GO:0009880 "embryonic pattern specification" evidence=IEP

GO:0005737 "cytoplasm" evidence=NAS;IDA

GO:0007367 "segment polarity determination" evidence=IEP;IMP;NAS;TAS

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0007458 "progression of morphogenetic furrow involved in compound eye morphogenesis" evidence=IGI;IEP;IMP;TAS

GO:0016540 "protein autoprocessing" evidence=NAS;IMP;IDA;TAS

GO:0035224 "genital disc anterior/posterior pattern formation" evidence=IEP

GO:0060914 "heart formation" evidence=IMP

GO:0007224 "smoothened signaling pathway" evidence=IGI;NAS;TAS

GO:0008354 "germ cell migration" evidence=IMP

GO:0007506 "gonadal mesoderm development" evidence=IMP

GO:0005113 "patched binding" evidence=NAS;TAS

GO:0005576 "extracellular region" evidence=NAS;TAS

GO:0007228 "positive regulation of hh target transcription factor activity" evidence=IGI

GO:0030908 "protein splicing" evidence=TAS

GO:0045880 "positive regulation of smoothened signaling pathway" evidence=TAS

GO:0035231 "cytoneme assembly" evidence=IMP

GO:0007440 "foregut morphogenesis" evidence=TAS

GO:0007442 "hindgut morphogenesis" evidence=IMP;TAS

GO:0048100 "wing disc anterior/posterior pattern formation" evidence=TAS

GO:0048099 "anterior/posterior lineage restriction, imaginal disc" evidence=TAS

GO:0007474 "imaginal disc-derived wing vein specification" evidence=TAS

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0001745 "compound eye morphogenesis" evidence=TAS

GO:0001746 "Bolwig's organ morphogenesis" evidence=IMP

GO:0030713 "ovarian follicle cell stalk formation" evidence=TAS

GO:0030707 "ovarian follicle cell development" evidence=TAS

GO:0008544 "epidermis development" evidence=TAS

GO:0040007 "growth" evidence=NAS

GO:0042993 "positive regulation of transcription factor import into nucleus" evidence=IMP

GO:0042078 "germ-line stem cell division" evidence=TAS

GO:0007498 "mesoderm development" evidence=NAS

GO:0007507 "heart development" evidence=NAS;TAS

GO:0007398 "ectoderm development" evidence=NAS

GO:0007346 "regulation of mitotic cell cycle" evidence=IMP

GO:0007427 "epithelial cell migration, open tracheal system" evidence=IMP

GO:0007447 "imaginal disc pattern formation" evidence=NAS

GO:0046620 "regulation of organ growth" evidence=TAS

GO:0035215 "genital disc development" evidence=IMP;TAS

GO:0007487 "analia development" evidence=TAS

GO:0042127 "regulation of cell proliferation" evidence=NAS

GO:0016015 "morphogen activity" evidence=TAS

GO:0007478 "leg disc morphogenesis" evidence=TAS

GO:0007386 "compartment pattern specification" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0008595 "anterior/posterior axis specification, embryo" evidence=NAS

GO:0045464 "R8 cell fate specification" evidence=NAS

GO:0008347 "glial cell migration" evidence=IMP

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0048103 "somatic stem cell division" evidence=TAS

GO:0004175 "endopeptidase activity" evidence=NAS

GO:0007473 "wing disc proximal/distal pattern formation" evidence=TAS

GO:0035232 "germ cell attraction" evidence=TAS

GO:0048066 "developmental pigmentation" evidence=TAS

GO:0007424 "open tracheal system development" evidence=TAS

GO:0042306 "regulation of protein import into nucleus" evidence=IMP

GO:0007446 "imaginal disc growth" evidence=TAS

GO:0016539 "intein-mediated protein splicing" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0001751 "compound eye photoreceptor cell differentiation" evidence=TAS

GO:0035288 "anterior head segmentation" evidence=TAS

GO:0035289 "posterior head segmentation" evidence=TAS

GO:0035290 "trunk segmentation" evidence=TAS

GO:0035217 "labial disc development" evidence=IMP

GO:0035277 "spiracle morphogenesis, open tracheal system" evidence=IMP

GO:0043498 "cell surface binding" evidence=IDA

GO:0007280 "pole cell migration" evidence=IGI

GO:0007418 "ventral midline development" evidence=IMP

GO:0021960 "anterior commissure morphogenesis" evidence=IMP

GO:0016335 "morphogenesis of larval imaginal disc epithelium" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048592 "eye morphogenesis" evidence=IMP

GO:0005768 "endosome" evidence=IDA

GO:0005615 "extracellular space" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030139 "endocytic vesicle" evidence=IDA

UNIPROTKB|B4NJP3 hh "Protein hedgehog" [Drosophila willistoni (taxid:7260)]

 Score = 249 (92.7 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 59/155 (38%), Positives = 88/155 (56%)

Query:     1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHK--NGKAYVERVTRLENVIQT 58
             +TP+HLI  W +P+++ +     Y +A+RV   + ++V+    G+   +RV ++ +V   
Sbjct:   317 VTPAHLISVW-QPDSQQL----NYVFADRVEEMNYVLVNDVVTGELLPQRVIKVTSVHSK 371

Query:    59 GVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLF-SSNHIENSSHV 117
             GV APLT  GTIVVN+V ASCYAVI++Q LAH    P+RL  SL +L  +   +  +S  
Sbjct:   372 GVVAPLTREGTIVVNSVVASCYAVINSQSLAHWGLAPMRLLSSLQSLMPAKGQLRTTSSA 431

Query:   118 T-------------GIHWYPKLLYSMSDYFIPSAW 139
             T             GIHWY   LY + DY +P +W
Sbjct:   432 TQPTKEVSRAEQQNGIHWYANALYKVKDYVLPKSW 466

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007367 "segment polarity determination" evidence=ISS

GO:0045168 "cell-cell signaling involved in cell fate commitment" evidence=ISS

UNIPROTKB|B4K4M0 hh "Protein hedgehog" [Drosophila mojavensis (taxid:7230)]

 Score = 249 (92.7 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 59/155 (38%), Positives = 84/155 (54%)

Query:     1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHK-NGKAYVERVTRLENVIQTG 59
             +TP+HLI  W           +E+ +A+RV     ++VH   G+   +RV R+++V   G
Sbjct:   327 VTPAHLIAVWQAER-----QTLEFVFADRVEELSQVLVHDATGELRPQRVLRVDSVQSRG 381

Query:    60 VYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVN-------LFSSNHIE 112
             V APLT  GTIVVN+V ASCYAVI +Q LAH    P+RL+ +L +       L S+    
Sbjct:   382 VVAPLTREGTIVVNSVAASCYAVISSQSLAHWGLAPMRLWSTLQSWMPAKGQLRSAQDKP 441

Query:   113 NSSHVT-----GIHWYPKLLYSMSDYFIPSAWMNN 142
                  T     GIHWY   LY + DY +P +W ++
Sbjct:   442 TPKDATAQQQNGIHWYANALYKVKDYVLPQSWRHD 476

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007367 "segment polarity determination" evidence=ISS

GO:0045168 "cell-cell signaling involved in cell fate commitment" evidence=ISS

UNIPROTKB|B3P7F8 hh "Protein hedgehog" [Drosophila erecta (taxid:7220)]

 Score = 247 (92.0 bits), Expect = 1.9e-20, P = 1.9e-20
 Identities = 56/152 (36%), Positives = 86/152 (56%)

Query:     1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH--KNGKAYVERVTRLENVIQT 58
             +TP+HL+  W   + K     + + +A+RV   + ++V   + G+   +RV ++ +V   
Sbjct:   319 VTPAHLVSVWQAESQK-----LTFVFADRVEEKNQVLVRDVETGELRPQRVVKVGSVRSK 373

Query:    59 GVYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLV-------NLFSSNHI 111
             GV APLT  GTIVVN+V ASCYAVI++Q LAH    P+RL  +L         L SS  +
Sbjct:   374 GVVAPLTREGTIVVNSVAASCYAVINSQSLAHWGLAPMRLLSTLEAWLPAKEQLHSSPKV 433

Query:   112 ENSSHV-TGIHWYPKLLYSMSDYFIPSAWMNN 142
               ++    GIHWY   LY + DY +P +W ++
Sbjct:   434 VTTAEQQNGIHWYANALYKVKDYVLPQSWRHD 465

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007367 "segment polarity determination" evidence=ISS

GO:0045168 "cell-cell signaling involved in cell fate commitment" evidence=ISS

UNIPROTKB|B4LZT9 hh "Protein hedgehog" [Drosophila virilis (taxid:7244)]

 Score = 237 (88.5 bits), Expect = 2.7e-19, P = 2.7e-19
 Identities = 55/155 (35%), Positives = 86/155 (55%)

Query:     1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHK-NGKAYVERVTRLENVIQTG 59
             +TP+HLI  W +P  +++    ++ +A+RV   + ++VH   G+    RV R+ +V   G
Sbjct:   334 VTPAHLITVW-QPEREAL----DFVFADRVEELNYVLVHDATGELRPHRVIRVSSVRSRG 388

Query:    60 VYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLF------------S 107
             V APLT  GTIVV++V ASCYAVI +Q LAH    P+RL ++L +              S
Sbjct:   389 VVAPLTREGTIVVDSVAASCYAVISSQSLAHWGLAPMRLLYTLQSWMPAKGQLRTAQDKS 448

Query:   108 SNHIENSSHVTGIHWYPKLLYSMSDYFIPSAWMNN 142
             +     +    G+HWY   LY + DY +P +W ++
Sbjct:   449 TPKDATAQQQNGLHWYANALYKVKDYVLPQSWRHD 483

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007367 "segment polarity determination" evidence=ISS

GO:0045168 "cell-cell signaling involved in cell fate commitment" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	143
pfam01079	214	pfam01079, Hint, Hint module	8e-46
cd00081	136	cd00081, Hint, Hedgehog/Intein domain, found in He	4e-06
smart00305	46	smart00305, HintC, Hint (Hedgehog/Intein) domain C	7e-05

>gnl|CDD|216288 pfam01079, Hint, Hint module

 Score =  147 bits (374), Expect = 8e-46
 Identities = 61/137 (44%), Positives = 81/137 (59%), Gaps = 4/137 (2%)

Query: 2   TPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYV--ERVTRLENVIQTG 59
           TP+HLI         S  +  E  +A  VR  D ++V  NG   +   +V R+  V +TG
Sbjct: 80  TPAHLIFVADCNTTSS--ALFEAVFASDVRPGDYVLVQDNGGGGLRPVKVVRVTTVERTG 137

Query: 60  VYAPLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFSSNHIENSSHVTG 119
           VYAPLT  GTIVV+ V ASCYAVI++  LAH +F PVRL HSL +L   +   ++S   G
Sbjct: 138 VYAPLTAHGTIVVDGVLASCYAVIESHSLAHWAFAPVRLLHSLSSLLWPSPSSSTSQQEG 197

Query: 120 IHWYPKLLYSMSDYFIP 136
           +HWY KLLY +  Y +P
Sbjct: 198 VHWYAKLLYRIGTYVLP 214

This is an alignment of the Hint module in the Hedgehog proteins. It does not include any Inteins which also possess the Hint module. Length = 214

>gnl|CDD|238035 cd00081, Hint, Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 12/79 (15%)

Query: 2   TPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQTGVY 61
           TP HL+             ++++ +A  ++  D ++V       V+ +  +E     GVY
Sbjct: 69  TPDHLLFVL-EDG------ELKWVFASDLKPGDYVLVPV--LEKVKEIEEIEY--TGGVY 117

Query: 62  APLTTS-GTIVVNNVFASC 79
                     + N V    
Sbjct: 118 DLTVEDNHNFIANGVLVHN 136

g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here. Length = 136

>gnl|CDD|197641 smart00305, HintC, Hint (Hedgehog/Intein) domain C-terminal region

 Score = 37.9 bits (89), Expect = 7e-05
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 41 NGKAYVERVTRLENVIQTGVYAP-LTTSGTIVVNNVFASCYAVID 84
           G     RV  +E    TGVY P +T +   + N +     A I+
Sbjct: 1  EGDFRFVRVKSIEETEYTGVYDPTVTENHNFIANGILVHNCAEIE 45

Hedgehog/Intein domain, C-terminal region. Domain has been split to accommodate large insertions of endonucleases. Length = 46

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
PF01079	217	Hint: Hint module; InterPro: IPR001767 This domain	100.0
KOG3638|consensus	414		100.0
cd00081	136	Hint Hedgehog/Intein domain, found in Hedgehog pro	98.8
smart00305	46	HintC Hint (Hedgehog/Intein) domain C-terminal reg	98.16
PRK14714	1337	DNA polymerase II large subunit; Provisional	91.0
PF07591	130	PT-HINT: Pretoxin HINT domain; InterPro: IPR011451	90.31

>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH)

Probab=100.00  E-value=1.3e-50  Score=324.57  Aligned_cols=134  Identities=44%  Similarity=0.783  Sum_probs=61.3

Q ss_pred             CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEee--CCceEEEEEEEEEEEEeeeeeecCCcceeEEEccEEEe
Q psy16497          1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHK--NGKAYVERVTRLENVIQTGVYAPLTTSGTIVVNNVFAS   78 (143)
Q Consensus         1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~--~~~l~~~rV~~V~~~~~~G~yAPlT~~GtivVd~V~aS   78 (143)
                      |||+||||+++|+..+.  .+.+++||++|++||||++..  ++.++++||++|++++++|+|||||.+||||||||+||
T Consensus        79 LTp~HLI~v~~~~~~~~--~~~~~vfA~~V~~Gd~v~~~~~~~~~~~~~~V~~v~~~~~~G~yAPLT~~GtivVdgVlaS  156 (217)
T PF01079_consen   79 LTPNHLIFVADCNGSES--SNFRAVFASDVRVGDCVLVSDEGGGKLRPSRVVRVSTVEKRGVYAPLTSHGTIVVDGVLAS  156 (217)
T ss_dssp             E-TT-EEEEEETTTTEE-----EEEEGGG--TT-EEEEE-TTT--EEEEEEEEEEEEEEEEEEEEEESSSEEEETTEEEE
T ss_pred             ecCCcEEEEecCCCCcc--cccceeehhhCCCCCEEEEEEcCCCcEEEEEEEEEEEEEEeeEEcCccCcceEEECCEEEE
Confidence            79999999999986321  112899999999999999943  35799999999999999999999999999999999999


Q ss_pred             eeeeeccchhhHHHHHHHHHHHHHhhhhcc---CCCCCCCCCceeechHHHHHHhhhhhcC
Q psy16497         79 CYAVIDNQFLAHLSFIPVRLYHSLVNLFSS---NHIENSSHVTGIHWYPKLLYSMSDYFIP  136 (143)
Q Consensus        79 Cya~i~~h~Lah~af~PlR~~~~~~~~~~~---~~~~~~~~~~GiHWY~~~Ly~i~~~~lp  136 (143)
                      |||++++|.||||+|+|+|+++++.++++.   .......+++|||||+++||+|++++||
T Consensus       157 Cya~v~~h~lah~~f~PlR~~~~~~~~~~~~~~~~~~~~~~~~GiHWYa~~Ly~l~~~~L~  217 (217)
T PF01079_consen  157 CYAVVESHTLAHWAFAPLRLLYSLSSWFGGRSASSSNSSPQQEGIHWYAQLLYRLGQYVLP  217 (217)
T ss_dssp             S------------------------------------------------------------
T ss_pred             EEEEecchHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCCceehHHHHHHHHhhccCC
Confidence            999999999999999999999999988763   1123467899999999999999999997

The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....

>KOG3638|consensus

Probab=100.00  E-value=1.1e-35  Score=256.77  Aligned_cols=134  Identities=33%  Similarity=0.566  Sum_probs=120.0

Q ss_pred             CCCCceEEeeeCCCCCC----ccCCcceeeecccccCCEEEEee--CCceEEEEEEEEEEEEeeeeeecCCcceeEEEcc
Q psy16497          1 MTPSHLILRWHRPNAKS----ILSDIEYTYAERVRVNDSIIVHK--NGKAYVERVTRLENVIQTGVYAPLTTSGTIVVNN   74 (143)
Q Consensus         1 LTp~HLifv~~~~~~~~----~~~~~~~vfA~~v~~Gd~v~v~~--~~~l~~~rV~~V~~~~~~G~yAPlT~~GtivVd~   74 (143)
                      ||++||||+++|+....    .+.+.++|||+++++||||++.+  ++++++.||.+|++.+++|+|||||.+|+|+||+
T Consensus       275 lT~~Hl~~~~~c~~~~~~~~~~~~~~~~v~A~~l~~gdcv~~~~~~~~~~~~~~I~~i~~~~~tGiyaPlT~~G~liVn~  354 (414)
T KOG3638|consen  275 LTPQHLVFVAQCQQQPQQFQYGPAGLEAVFASRLRIGDCVLVAPGAGNKLRQQKIGAISRPVATGIYAPLTSNGDLIVND  354 (414)
T ss_pred             cchhheeecCCCCCCccccccccCCcccccHhhCCcccEEEEecCCCCccceeeccccccccccccccCcccCCcEEecc
Confidence            79999999999987421    24577999999999999999999  6689999999999999999999999999999999


Q ss_pred             EEEeeeeeeccchhhHHHHHHHHHHHHHhhhhccCCCCCCCCCceeechHHHHHHhhhhhcCCC
Q psy16497         75 VFASCYAVIDNQFLAHLSFIPVRLYHSLVNLFSSNHIENSSHVTGIHWYPKLLYSMSDYFIPSA  138 (143)
Q Consensus        75 V~aSCya~i~~h~Lah~af~PlR~~~~~~~~~~~~~~~~~~~~~GiHWY~~~Ly~i~~~~lp~~  138 (143)
                      |+|||||++++|+|||++|+|+|.++++...+.    .......+||||+++|+.|.+++||.+
T Consensus       355 vlaSC~s~~~~~~lq~~~f~~~~~~~~~~~~~~----~~~~~~~~ip~~~~~~~~l~~~vlp~~  414 (414)
T KOG3638|consen  355 VLASCYSEIEEQSLQPTFFAPLRLLHSLFANLF----DSLGAEGGIPTGSALLYELLDLVLPSG  414 (414)
T ss_pred             eeeccchhhhhhhchhhhhhhhhhHHHHhhhcc----cccccccCCChHHHHHHHHHHhhcCCC
Confidence            999999999999999999999999987765554    334457799999999999999999974

>cd00081 Hint Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e

Probab=98.80  E-value=1.3e-08  Score=73.55  Aligned_cols=67  Identities=24%  Similarity=0.474  Sum_probs=57.7

Q ss_pred             CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEeeCCceEEEEEEEEEEEEee-eeeecCCc-ceeEEEccEEEe
Q psy16497          1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQT-GVYAPLTT-SGTIVVNNVFAS   78 (143)
Q Consensus         1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~~~-G~yAPlT~-~GtivVd~V~aS   78 (143)
                      +||+|.+|+.++.  ..     ..+.|+++++||+|.+.     ...+|.+|+..... ++|+|.+. .++++|||++++
T Consensus        68 ~T~~H~~~~~~~~--~~-----~~~~a~~l~~gd~l~~~-----~~~~v~~i~~~~~~~~vY~~~v~~~~~~~~~g~lvH  135 (136)
T cd00081          68 LTPDHLLFVLEDG--EL-----KWVFASDLKPGDYVLVP-----VLEKVKEIEEIEYTGGVYDLTVEDNHNFIANGVLVH  135 (136)
T ss_pred             EcCCCEEEEEeCC--eE-----EEEEHHHCCCCCEEEEc-----cceEEEEEEEEccCCeEEccEEcCCceEEECcEEEc
Confidence            5999999998764  23     67899999999999886     34678888888877 99999999 999999999998


Q ss_pred             e
Q psy16497         79 C   79 (143)
Q Consensus        79 C   79 (143)
                      |
T Consensus       136 N  136 (136)
T cd00081         136 N  136 (136)
T ss_pred             C
Confidence            6

g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here.

>smart00305 HintC Hint (Hedgehog/Intein) domain C-terminal region

Probab=98.16  E-value=6.6e-06  Score=50.67  Aligned_cols=43  Identities=30%  Similarity=0.483  Sum_probs=38.8

Q ss_pred             CceEEEEEEEEEEEEeeeeeec-CCcceeEEEccEEEeeeeeec
Q psy16497         42 GKAYVERVTRLENVIQTGVYAP-LTTSGTIVVNNVFASCYAVID   84 (143)
Q Consensus        42 ~~l~~~rV~~V~~~~~~G~yAP-lT~~GtivVd~V~aSCya~i~   84 (143)
                      +.++..||.+|+.....++|.| +|..++.++||++++|.+..+
T Consensus         2 ~~~~~~~V~~i~~~~~~~vYd~~v~~~~~fv~ngi~~hN~~~~~   45 (46)
T smart00305        2 GDFRFVRVKSIEETEYTGVYDPTVTENHNFIANGILVHNCAEIE   45 (46)
T ss_pred             CCEEEEEEEEEEEeCCccEEeeEeCCCCeEEECCEEEEeeeccc
Confidence            3578899999999999999999 999999999999999987653

Hedgehog/Intein domain, C-terminal region. Domain has been split to accommodate large insertions of endonucleases.

>PRK14714 DNA polymerase II large subunit; Provisional

Probab=91.00  E-value=0.77  Score=45.62  Aligned_cols=84  Identities=25%  Similarity=0.334  Sum_probs=61.6

Q ss_pred             CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEeeC----CceEEEEEEEEEEEEee-eeeecCCcce--eEEEc
Q psy16497          1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKN----GKAYVERVTRLENVIQT-GVYAPLTTSG--TIVVN   73 (143)
Q Consensus         1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~~----~~l~~~rV~~V~~~~~~-G~yAPlT~~G--tivVd   73 (143)
                      +|++|=+++.++  +.+     ..+-|+++++||.|.+...    +.+...+|.+|..+... +..-=||...  ++++|
T Consensus      1009 VT~DHpvLv~~g--ggl-----~wkkA~ELk~GD~I~ip~~~~s~s~V~~d~V~~Ieyv~~e~d~VYDLtV~~tHnfIAN 1081 (1337)
T PRK14714       1009 VTPDHAMLVWDG--GYL-----EKKRAFEVKEGDAVPVPEGVEETGVVLADEVVSIEYVESDDDFVYCLTVAEYHTVVAN 1081 (1337)
T ss_pred             ecCCceEEEecC--Cce-----EEEeHHHcCCCCEEeeccccccCCceeeEEEEEEeeecCCCceEEEecccccceEEEc
Confidence            588888888765  334     6789999999999999754    46899999999987754 3334466666  89999


Q ss_pred             cEEEeeeeeeccchhhHHHH
Q psy16497         74 NVFASCYAVIDNQFLAHLSF   93 (143)
Q Consensus        74 ~V~aSCya~i~~h~Lah~af   93 (143)
                      |++..  ++=++.++--+.+
T Consensus      1082 gIiVH--sCDGDED~VMLLl 1099 (1337)
T PRK14714       1082 GIFTG--QCDGDEDCVMLLL 1099 (1337)
T ss_pred             ceEEe--ccCchHHHHHHHH
Confidence            99985  5555555444333

>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans

Probab=90.31  E-value=0.45  Score=35.17  Aligned_cols=40  Identities=23%  Similarity=0.292  Sum_probs=15.6

Q ss_pred             CCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEeeCCceEEEEEEEEEE
Q psy16497          2 TPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLEN   54 (143)
Q Consensus         2 Tp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~~~~l~~~rV~~V~~   54 (143)
                      ||.|-.|+.+          +.-+-|+++++||.|+..++.   ...|.++..
T Consensus        59 T~~HPF~~~~----------~gWv~A~~L~~GD~L~~~~G~---~~~v~~i~~   98 (130)
T PF07591_consen   59 TPNHPFWVEG----------KGWVEAEDLKVGDRLLTADGS---WVTVTSIRR   98 (130)
T ss_dssp             -----------------------EEGGG--TTSEEEEE-SS---EEEEE----
T ss_pred             ccccccccch----------HhhhhHhhCCCCCEEEcCCCC---EEEEEEEEe
Confidence            7777777653          156899999999999888765   344555543

One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	143
1at0_A	145	17-Kda Fragment Of Hedgehog C-Terminal Autoprocessi		5e-10

>pdb|1AT0|A Chain A, 17-Kda Fragment Of Hedgehog C-Terminal Autoprocessing Domain Length = 145

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH--KNGKAYVERVTRLENVIQT 58
           +TP+HL+  W   + K     + + +A+R+   + ++V   + G+   +RV ++ +V   
Sbjct: 68  VTPAHLVSVWQPESQK-----LTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSK 122
Query: 59  GVYAPLTTSGTIVVNNVFASCYA 81
           GV APLT  GTIVVN+V ASCYA
Sbjct: 123 GVVAPLTREGTIVVNSVAASCYA 145

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
1at0_A	145	17-hedgehog; developmental signaling molecule, cho	2e-18

>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1 Length = 145

 Score = 75.1 bits (184), Expect = 2e-18
 Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 7/83 (8%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH--KNGKAYVERVTRLENVIQT 58
           +TP+HL+  W   +       + + +A+R+   + ++V   + G+   +RV ++ +V   
Sbjct: 68  VTPAHLVSVWQPES-----QKLTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSK 122

Query: 59  GVYAPLTTSGTIVVNNVFASCYA 81
           GV APLT  GTIVVN+V ASCYA
Sbjct: 123 GVVAPLTREGTIVVNSVAASCYA 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
1at0_A	145	17-hedgehog; developmental signaling molecule, cho	99.95
2jmz_A	186	Hypothetical protein MJ0781; unknown function; NMR	99.4
1mi8_A	158	DNAB intein; all beta-strands, hydrolase; 2.00A {S	98.84
2in0_A	139	Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacter	98.43
2lcj_A	185	PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi	97.81
4e2u_A	168	PHO RADA intein; HINT-fold, unknown function; 1.58	97.77
1am2_A	199	MXE GYRA intein; protein splicing; 2.20A {Mycobact	97.7
2imz_A	168	Endonuclease PI-MTUI; N-terminal cysteine sulfinic	97.11
2keq_A	139	DNA polymerase III alpha subunit, nucleic acid bin	81.72

>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1

Probab=99.95  E-value=9.4e-28  Score=179.79  Aligned_cols=76  Identities=41%  Similarity=0.731  Sum_probs=71.3

Q ss_pred             CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEeeC--CceEEEEEEEEEEEEeeeeeecCCcceeEEEccEEEe
Q psy16497          1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKN--GKAYVERVTRLENVIQTGVYAPLTTSGTIVVNNVFAS   78 (143)
Q Consensus         1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~~--~~l~~~rV~~V~~~~~~G~yAPlT~~GtivVd~V~aS   78 (143)
                      |||+|+||+.+++.++.     +.+||++|++||+|++.++  +.+++++|++|+.+++.|+|||||.+|||+||||+||
T Consensus        68 lTp~H~i~v~~~~~~~~-----~~v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~~~~~G~yaPlT~~GtivVn~v~aS  142 (145)
T 1at0_A           68 VTPAHLVSVWQPESQKL-----TFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSKGVVAPLTREGTIVVNSVAAS  142 (145)
T ss_dssp             ECTTCEEEEEETTTTEE-----EEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEEEEEEEEEEEESSSEEEETTEEEE
T ss_pred             EeCCCEEEEecCCCCcE-----EEEEHHHCcCCCEEEEecCCCCCEEEEEEEEEEEEEEeeeEccccCcEEEEECCEEEE
Confidence            69999999999876545     8899999999999999987  5799999999999999999999999999999999999


Q ss_pred             eee
Q psy16497         79 CYA   81 (143)
Q Consensus        79 Cya   81 (143)
                      |||
T Consensus       143 cya  145 (145)
T 1at0_A          143 CYA  145 (145)
T ss_dssp             SCC
T ss_pred             EcC
Confidence            997

>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A

Probab=99.40  E-value=2.5e-13  Score=104.41  Aligned_cols=78  Identities=23%  Similarity=0.209  Sum_probs=70.2

Q ss_pred             CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEeeCCceEEEEEEEEEEEEeeeeeecCCcce--eEEEc---cE
Q psy16497          1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQTGVYAPLTTSG--TIVVN---NV   75 (143)
Q Consensus         1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~~~G~yAPlT~~G--tivVd---~V   75 (143)
                      +||+|.+|+.+.  +++     +.++|+++++||+|.+..++.+.+++|++|+..+..|.++|||.+|  |++||   |+
T Consensus        99 ~T~~Hp~~v~~~--g~~-----~w~~A~eLk~GD~v~~~~~~~~~~~~V~~v~~~~~~~~vy~Ltv~g~Ht~vv~~~~gi  171 (186)
T 2jmz_A           99 LTHDHPVYISKT--GEV-----LEINAEMVKVGDYIYIPKNNTINLDEVIKVETVDYNGHIYDLTVEDNHTYIAGKNEGF  171 (186)
T ss_dssp             BCTTCEEEEEET--TEE-----EEEEGGGCCTTSEEEEECSSSEEEEECCCCCEEEECSCEEEEECTTTSEEEESSTTCE
T ss_pred             EeCCCEEEEeCC--CeE-----EEEEhhcCCCCCEEEecccCCccceEEEEEEEeccCCEEEeeEEcCceeEEecCCCCE
Confidence            599999999975  344     7899999999999999988789999999999999999999999999  99999   99


Q ss_pred             EEeeeeeecc
Q psy16497         76 FASCYAVIDN   85 (143)
Q Consensus        76 ~aSCya~i~~   85 (143)
                      ++||+..-..
T Consensus       172 ~vhn~~~~~~  181 (186)
T 2jmz_A          172 AVSASSGTLH  181 (186)
T ss_dssp             EEECCSSTTT
T ss_pred             EEEcCCCCcc
Confidence            9999976443

>1mi8_A DNAB intein; all beta-strands, hydrolase; 2.00A {Synechocystis SP} SCOP: b.86.1.2

Probab=98.84  E-value=1.1e-08  Score=75.93  Aligned_cols=67  Identities=15%  Similarity=0.313  Sum_probs=56.9

Q ss_pred             CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEee-----------------CCceEEEEEEEEEEEEeeeeeec
Q psy16497          1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHK-----------------NGKAYVERVTRLENVIQTGVYAP   63 (143)
Q Consensus         1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~-----------------~~~l~~~rV~~V~~~~~~G~yAP   63 (143)
                      +||+|.+|+.+           .-++|+++++||.|.+..                 ++.+.+++|++|......++|. 
T Consensus        71 ~T~~H~~~t~~-----------gw~~a~~L~~GD~v~~~~~~~~~~~~~~~~l~~~~~~~v~~~~V~~I~~~~~~~VYd-  138 (158)
T 1mi8_A           71 ATANHRFLTID-----------GWKRLDELSLKEHIALPRKLESSSLQLSPEIEKLSQSDISWDSIVSITETGVEEVFD-  138 (158)
T ss_dssp             ECTTCEEEETT-----------EEEEGGGCCTTCEEEEECC-----------------CCEEEEEEEEEEEEEEEEEEE-
T ss_pred             EeCCceEEecc-----------CCEEhhhCCCCCEEEeccccCccccccchhHhhhhcCCeEEEEEEEEEEeCCCcEEE-
Confidence            48999999753           347999999999999873                 2468889999999999999995 


Q ss_pred             CCcce--eEEEccEEEee
Q psy16497         64 LTTSG--TIVVNNVFASC   79 (143)
Q Consensus        64 lT~~G--tivVd~V~aSC   79 (143)
                      ||.+|  |.++||+++.+
T Consensus       139 LtV~~~h~~~angvlvHN  156 (158)
T 1mi8_A          139 LTVPGPHNFVANDIIVHA  156 (158)
T ss_dssp             EECTTTCEEEETTEEEEC
T ss_pred             EEECCcceEEECCEEEec
Confidence            99999  99999998743

>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A

Probab=98.43  E-value=8.3e-07  Score=64.44  Aligned_cols=65  Identities=18%  Similarity=0.247  Sum_probs=55.2

Q ss_pred             CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEeeCC--ceEEEEEEEEEEEEeeeeeecCCcce--eEEEccEE
Q psy16497          1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNG--KAYVERVTRLENVIQTGVYAPLTTSG--TIVVNNVF   76 (143)
Q Consensus         1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~~~--~l~~~rV~~V~~~~~~G~yAPlT~~G--tivVd~V~   76 (143)
                      +||+|.++..+           .-++|+++++||+|++.++.  .+++++|.+|......++|. ||-++  |.++||++
T Consensus        69 ~T~~H~~~t~~-----------gw~~a~~L~~Gd~v~~~~~~~~~~~~~~V~~I~~~~~~~VYn-l~V~~~htyv~~gvl  136 (139)
T 2in0_A           69 ATPDHKVLTEY-----------GWRAAGELRKGDRVAVRDVETGELRYSVIREVLPTRRARTFD-LEVEELHTLVAEGVV  136 (139)
T ss_dssp             ECTTCEEEETT-----------EEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEEEEEEEEE-EEETTTCEEEETTEE
T ss_pred             ecCCCeEEecC-----------CcEEHHHCCCCCEEEeCCCcceeecceEEEEEeecCCCcEEE-EEECCCCEEEECCEE
Confidence            48999999432           36799999999999998763  48899999999888899998 88888  89999987


Q ss_pred             E
Q psy16497         77 A   77 (143)
Q Consensus        77 a   77 (143)
                      +
T Consensus       137 V  137 (139)
T 2in0_A          137 V  137 (139)
T ss_dssp             E
T ss_pred             e
Confidence            6

>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}

Probab=97.81  E-value=3.3e-05  Score=58.80  Aligned_cols=69  Identities=19%  Similarity=0.332  Sum_probs=50.7

Q ss_pred             CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEee------------------CCceE---EEEEEEEEEEEee-
Q psy16497          1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHK------------------NGKAY---VERVTRLENVIQT-   58 (143)
Q Consensus         1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~------------------~~~l~---~~rV~~V~~~~~~-   58 (143)
                      +||+|.+|+.+.  +.+     +.++|+++++||+|.+..                  ++.+.   ..+|.+|...... 
T Consensus        89 ~T~~H~~~v~~~--g~~-----~~~~A~eLk~GD~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~~i~~~~~~~  161 (185)
T 2lcj_A           89 TTVDHPVLVYEN--GRF-----IEKRAFEVKEGDKVLVSELELVEQSSSSQDNPKNENLGSPEHDQLLEIKNIKYVRAND  161 (185)
T ss_dssp             ECSSSEEEEEET--TEE-----EEEEGGGCCTTCEEEECCCCCSCCCSSSSCCSCCCSTTCCCCCCCEEEEEEEEECCSS
T ss_pred             ECCCCEEEEecC--CeE-----EEEEHHHCCCCCEEEEcccccccccccccccccccccccccccceeEEEEEEEEcCCC
Confidence            599999999975  334     789999999999999976                  22222   2377777766543 


Q ss_pred             e-eeecCCcce--eEEEc-cEEE
Q psy16497         59 G-VYAPLTTSG--TIVVN-NVFA   77 (143)
Q Consensus        59 G-~yAPlT~~G--tivVd-~V~a   77 (143)
                      + +| =||..|  |.++| |+++
T Consensus       162 ~~VY-dltV~~~Hnf~~n~gi~v  183 (185)
T 2lcj_A          162 DFVF-SLNAKKYHNVIINENIVT  183 (185)
T ss_dssp             SEEE-CCEETTSSEEEETTTEEE
T ss_pred             CceE-EEEEcCCcceEccCCeEe
Confidence            2 55 377777  88899 8874

>4e2u_A PHO RADA intein; HINT-fold, unknown function; 1.58A {Pyrococcus horikoshii} PDB: 2lqm_A 4e2t_A*

Probab=97.77  E-value=7.6e-05  Score=56.10  Aligned_cols=67  Identities=21%  Similarity=0.272  Sum_probs=52.2

Q ss_pred             CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEeeC--CceEEEEEEEEEEEEeeeeeecCCcce--eEEE-ccE
Q psy16497          1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKN--GKAYVERVTRLENVIQTGVYAPLTTSG--TIVV-NNV   75 (143)
Q Consensus         1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~~--~~l~~~rV~~V~~~~~~G~yAPlT~~G--tivV-d~V   75 (143)
                      +||.|.+|+.+..   .     ..++|+++++||+|++..+  +.+.+++|++|.... .-+|. ||-.+  |.++ ||+
T Consensus        93 ~T~~Hp~~~~~~~---~-----~w~~a~~L~~Gd~l~~~~gs~~~~~~~~Vv~i~~~~-~~VYn-ltV~~~Htf~agngv  162 (168)
T 4e2u_A           93 VTPSHPVLLFRDG---L-----QWVPAAEVKPGDVVVGVRNGELEFHEVSSVRIIDYN-NWVYD-LVIPETHNFIAPNGL  162 (168)
T ss_dssp             ECTTCEEEEESSS---E-----EEEEGGGCCTTCEEEEEETTEEEEEEEEEEEEEEEE-EEEEE-EECTTTSEEECTTCB
T ss_pred             ECCCCcEEEEcCC---C-----EEEEHHHCCCCCEEEeccCCCccEEEEEEEEEEECC-CEEEE-eEECCCeEEEECCCE
Confidence            4999999987532   1     6789999999999999987  467889999998776 55664 45555  6788 887


Q ss_pred             EE
Q psy16497         76 FA   77 (143)
Q Consensus        76 ~a   77 (143)
                      ++
T Consensus       163 lV  164 (168)
T 4e2u_A          163 VL  164 (168)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>1am2_A MXE GYRA intein; protein splicing; 2.20A {Mycobacterium xenopi} SCOP: b.86.1.2

Probab=97.70  E-value=0.00016  Score=55.77  Aligned_cols=71  Identities=15%  Similarity=0.314  Sum_probs=53.4

Q ss_pred             CCCCceEEeeeCCCC--CCccCCcceeeecccccCCEEEEee--------------------------------------
Q psy16497          1 MTPSHLILRWHRPNA--KSILSDIEYTYAERVRVNDSIIVHK--------------------------------------   40 (143)
Q Consensus         1 LTp~HLifv~~~~~~--~~~~~~~~~vfA~~v~~Gd~v~v~~--------------------------------------   40 (143)
                      +||+|.+++.+...+  .+     ..++|+++++||+|++..                                      
T Consensus        72 ~T~dH~~lt~~~~~g~~~~-----~w~~a~eLk~GD~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  146 (199)
T 1am2_A           72 GTANHPLLCLVDVAGVPTL-----LWKLIDEIKPGDYAVIQRSAFSVDCAGFARGKPEFAPTTYTVGVPGLVRFLEAHHR  146 (199)
T ss_dssp             ECTTCEEEEEEEETTEEEE-----EEEEGGGCCTTCEEEEEGGGCC------------------CCSCTTHHHHHHHTSS
T ss_pred             EeCCCEEEEeccCCCccce-----eEEEhhHCCCCCEEEECCcCcchhhcceeccccccccccccccchhhhhhhhhhcc
Confidence            599999999874222  33     678999999999999854                                      


Q ss_pred             ------------CCceEEEEEEEEEEEEeeeeeecCCcce---eEEEccEEE
Q psy16497         41 ------------NGKAYVERVTRLENVIQTGVYAPLTTSG---TIVVNNVFA   77 (143)
Q Consensus        41 ------------~~~l~~~rV~~V~~~~~~G~yAPlT~~G---tivVd~V~a   77 (143)
                                  ++.+...+|++|.......+|- ||..+   +.++||+++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~vyD-l~V~~~~h~fiangi~v  197 (199)
T 1am2_A          147 DPDAKAIADELTDGRFYYAKVASVTDAGVQPVYS-LRVDTADHAFITNGFVS  197 (199)
T ss_dssp             STTHHHHHHHHHCTTEEEEEEEEEEEEEEEEEEE-EEESSSSCEEEETTEEE
T ss_pred             ccchhhcceeeccCceEEEEEEEEeecCCcEEEE-eeeCCcCceeEecceEe
Confidence                        1246778999998877667775 44444   888999875

>2imz_A Endonuclease PI-MTUI; N-terminal cysteine sulfinic acid C-terminal aminosuccinimide, hydrolase; 1.70A {Mycobacterium tuberculosis}

Probab=97.11  E-value=0.0015  Score=48.34  Aligned_cols=57  Identities=14%  Similarity=0.028  Sum_probs=24.8

Q ss_pred             CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEeeCCceEEEEEEEEEEEEeeeeeecCCcceeEE
Q psy16497          1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQTGVYAPLTTSGTIV   71 (143)
Q Consensus         1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~~~G~yAPlT~~Gtiv   71 (143)
                      +||+|.+++.+           .-++|+++++||.|.+...  +......++ ..++.+++++++.+|++.
T Consensus        69 ~T~~H~~~t~~-----------gw~~a~~L~~Gd~v~~~~~--l~~~~~~~~-~~~~~~llg~l~~dG~~~  125 (168)
T 2imz_A           69 ATPDHKVLTEY-----------GWRAAGELRKGDRVAQPRR--FDGFGDSAP-IPARVQALADALDDKFLH  125 (168)
T ss_dssp             ECTTCEEEETT-----------EEEEGGGCCTTCEEECCBC--CCCC------------------------
T ss_pred             EcCCCCEEEcc-----------CCEEHHHCCCCCEEEEecc--CCccccccC-CHHHHHHHHHHhccccee
Confidence            48999999753           3579999999999988642  111112222 234456677777777663

>2keq_A DNA polymerase III alpha subunit, nucleic acid binding OB-fold tRNA/helicase-type...; intein, DNAE intein, protein splicing; HET: DNA; NMR {Nostoc punctiforme pcc 73102}

Probab=81.72  E-value=0.33  Score=35.00  Aligned_cols=66  Identities=14%  Similarity=0.105  Sum_probs=39.2

Q ss_pred             CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEeeCCceEEEEEEEEEEEEeeeeeecCCcce--eEE-EccEEE
Q psy16497          1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQTGVYAPLTTSG--TIV-VNNVFA   77 (143)
Q Consensus         1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~~~G~yAPlT~~G--tiv-Vd~V~a   77 (143)
                      +||+|.++..+...-.+   +..-+-|.++++||.+        ...+|.+|.......+|- +|..+  +.+ .||+++
T Consensus        70 ~T~dH~~lt~~G~~~~~---~~~Wk~~~eL~~gD~v--------~~~~i~~i~~~~~~~vyd-l~v~~~hnf~~ang~~v  137 (139)
T 2keq_A           70 ATKDHKFMTVDGQMLPI---DEIFERELDLMRVDNL--------PNIKIATRKYLGKQNVYD-IGVERDHNFALKNGFIA  137 (139)
T ss_dssp             EETTCEEEBTTCCEEEH---HHHHHHTCCBCCSSCC--------CCCCEEEEEEEEEECEEE-EECSSCSEEECTTSCEE
T ss_pred             EeCCCcEEEECCccccc---hhhheehhhccCCCcc--------cccceeEEEEcCCCcEEE-EEECCCCccEeeCCEEE
Confidence            37888887654311000   0013578999999973        446777777666666773 33333  566 677766


Q ss_pred             e
Q psy16497         78 S   78 (143)
Q Consensus        78 S   78 (143)
                      +
T Consensus       138 h  138 (139)
T 2keq_A          138 S  138 (139)
T ss_dssp             E
T ss_pred             c
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d1at0a_	145	b.86.1.1 (A:) Hedgehog {Fruit fly (Drosophila mela	1e-14

>d1at0a_ b.86.1.1 (A:) Hedgehog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 145

class: All beta proteins
fold: Hedgehog/intein (Hint) domain
superfamily: Hedgehog/intein (Hint) domain
family: Hedgehog C-terminal (Hog) autoprocessing domain
domain: Hedgehog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 64.5 bits (156), Expect = 1e-14
 Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 7/83 (8%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH--KNGKAYVERVTRLENVIQT 58
           +TP+HL+  W   +       + + +A+R+   + ++V   + G+   +RV ++ +V   
Sbjct: 68  VTPAHLVSVWQPES-----QKLTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSK 122

Query: 59  GVYAPLTTSGTIVVNNVFASCYA 81
           GV APLT  GTIVVN+V ASCYA
Sbjct: 123 GVVAPLTREGTIVVNSVAASCYA 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d1at0a_	145	Hedgehog {Fruit fly (Drosophila melanogaster) [Tax	99.89
d1am2a_	199	GyrA intein {Mycobacterium xenopi [TaxId: 1789]}	96.65
d1mi8a_	158	DnaB intein {Synechocystis sp. pcc 6803 [TaxId: 11	96.65
d1dq3a1	168	PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxI	95.36
d1x6oa1	68	Eukaryotic initiation translation factor 5a (eIF5a	85.63

>d1at0a_ b.86.1.1 (A:) Hedgehog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Hedgehog/intein (Hint) domain
superfamily: Hedgehog/intein (Hint) domain
family: Hedgehog C-terminal (Hog) autoprocessing domain
domain: Hedgehog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=1.8e-23  Score=151.54  Aligned_cols=76  Identities=41%  Similarity=0.731  Sum_probs=70.5

Q ss_pred             CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEeeC--CceEEEEEEEEEEEEeeeeeecCCcceeEEEccEEEe
Q psy16497          1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKN--GKAYVERVTRLENVIQTGVYAPLTTSGTIVVNNVFAS   78 (143)
Q Consensus         1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~~--~~l~~~rV~~V~~~~~~G~yAPlT~~GtivVd~V~aS   78 (143)
                      +||.|++|+.++..++.     +.+.|+++++||+|++.++  +.+++.+|.+|..++.+|+|||||.+|||+||||+||
T Consensus        68 ~T~~H~~~v~~~~~~~~-----~~v~a~~l~~GD~l~~~~~~~~~~~~~~v~~i~~~~~~g~yaplT~~Gt~vvngv~~S  142 (145)
T d1at0a_          68 VTPAHLVSVWQPESQKL-----TFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSKGVVAPLTREGTIVVNSVAAS  142 (145)
T ss_dssp             ECTTCEEEEEETTTTEE-----EEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEEEEEEEEEEEESSSEEEETTEEEE
T ss_pred             EecCceEEEEcCCCCce-----eEEEeeeecCCCEEEEEcCCCCeeeeEEEEEEEEEEEeEEEEcccCceEEEECCEEEE
Confidence            59999999999876655     8899999999999999886  3699999999999999999999999999999999999


Q ss_pred             eee
Q psy16497         79 CYA   81 (143)
Q Consensus        79 Cya   81 (143)
                      |||
T Consensus       143 ~y~  145 (145)
T d1at0a_         143 CYA  145 (145)
T ss_dssp             SCC
T ss_pred             ccC
Confidence            997

>d1am2a_ b.86.1.2 (A:) GyrA intein {Mycobacterium xenopi [TaxId: 1789]}

class: All beta proteins
fold: Hedgehog/intein (Hint) domain
superfamily: Hedgehog/intein (Hint) domain
family: Intein (protein splicing domain)
domain: GyrA intein
species: Mycobacterium xenopi [TaxId: 1789]

Probab=96.65  E-value=0.0036  Score=45.78  Aligned_cols=71  Identities=14%  Similarity=0.297  Sum_probs=51.9

Q ss_pred             CCCceEEeeeCCC--CCCccCCcceeeecccccCCEEEEeeC--------------------------------------
Q psy16497          2 TPSHLILRWHRPN--AKSILSDIEYTYAERVRVNDSIIVHKN--------------------------------------   41 (143)
Q Consensus         2 Tp~HLifv~~~~~--~~~~~~~~~~vfA~~v~~Gd~v~v~~~--------------------------------------   41 (143)
                      ||.|-+|+.+...  ...     .-+-|.++++||+|.+...                                      
T Consensus        73 T~~H~~~~~~~~~~~~~~-----~w~~~~~l~~gD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (199)
T d1am2a_          73 TANHPLLCLVDVAGVPTL-----LWKLIDEIKPGDYAVIQRSAFSVDCAGFARGKPEFAPTTYTVGVPGLVRFLEAHHRD  147 (199)
T ss_dssp             CTTCEEEEEEEETTEEEE-----EEEEGGGCCTTCEEEEEGGGCC------------------CCSCTTHHHHHHHTSSS
T ss_pred             eCCCeEEEecCCCcccee-----EEEEHHHCCCCCEEEEcccccccccccccccccccccccccccCCchhhhhhhhccc
Confidence            8999999987533  223     4578999999999987521                                      


Q ss_pred             ------------CceEEEEEEEEEEEEeeeeeecCCcce--eEEEccEEE
Q psy16497         42 ------------GKAYVERVTRLENVIQTGVYAPLTTSG--TIVVNNVFA   77 (143)
Q Consensus        42 ------------~~l~~~rV~~V~~~~~~G~yAPlT~~G--tivVd~V~a   77 (143)
                                  +.....+|.+|......-+|-==...|  +.+.||+++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~I~sIe~~g~e~VYDL~Ve~~~hnfvAnGivv  197 (199)
T d1am2a_         148 PDAKAIADELTDGRFYYAKVASVTDAGVQPVYSLRVDTADHAFITNGFVS  197 (199)
T ss_dssp             TTHHHHHHHHHCTTEEEEEEEEEEEEEEEEEEEEEESSSSCEEEETTEEE
T ss_pred             cchhhhhhhhcccceeEEEEEEEeecCCEeEEEeEEcCCCeEEEECCEEe
Confidence                        235678999998777777887433235  599999986

>d1mi8a_ b.86.1.2 (A:) DnaB intein {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: All beta proteins
fold: Hedgehog/intein (Hint) domain
superfamily: Hedgehog/intein (Hint) domain
family: Intein (protein splicing domain)
domain: DnaB intein
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.65  E-value=0.0055  Score=42.27  Aligned_cols=64  Identities=14%  Similarity=0.289  Sum_probs=47.4

Q ss_pred             CCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEeeC-----------------CceEEEEEEEEEEEEeeeeeecC
Q psy16497          2 TPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKN-----------------GKAYVERVTRLENVIQTGVYAPL   64 (143)
Q Consensus         2 Tp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~~-----------------~~l~~~rV~~V~~~~~~G~yAPl   64 (143)
                      ||.|.+|+.+           .-+.|+++++||++.+...                 +.....+|.+|+.....-+|- |
T Consensus        72 T~~Hp~~~~~-----------gw~~~~~l~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~VYd-l  139 (158)
T d1mi8a_          72 TANHRFLTID-----------GWKRLDELSLKEHIALPRKLESSSLQLSPEIEKLSQSDISWDSIVSITETGVEEVFD-L  139 (158)
T ss_dssp             CTTCEEEETT-----------EEEEGGGCCTTCEEEEECC-----------------CCEEEEEEEEEEEEEEEEEEE-E
T ss_pred             eCCEEEEEee-----------CCEEchhcCCCCEeeeccccccceeeecceeeeecCCCceEEEEEEEEecCCeEEEE-E
Confidence            8889888753           2357899999999987542                 235667888887776667886 3


Q ss_pred             Cc--ceeEEEccEEE
Q psy16497         65 TT--SGTIVVNNVFA   77 (143)
Q Consensus        65 T~--~GtivVd~V~a   77 (143)
                      |.  ..+.++||+++
T Consensus       140 ~V~~~h~f~angilv  154 (158)
T d1mi8a_         140 TVPGPHNFVANDIIV  154 (158)
T ss_dssp             ECTTTCEEEETTEEE
T ss_pred             EECCCCEEEECCEEE
Confidence            43  45899999987

>d1dq3a1 b.86.1.2 (A:1-128,A:415-454) PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Hedgehog/intein (Hint) domain
superfamily: Hedgehog/intein (Hint) domain
family: Intein (protein splicing domain)
domain: PI-Pfui intein
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.36  E-value=0.014  Score=41.89  Aligned_cols=62  Identities=18%  Similarity=0.171  Sum_probs=38.1

Q ss_pred             CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEeeCCceEEEEEEEEEEEEee-eeeecCCcce--eEEEc
Q psy16497          1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQT-GVYAPLTTSG--TIVVN   73 (143)
Q Consensus         1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~~~-G~yAPlT~~G--tivVd   73 (143)
                      .||.|=+|+.+.+ +..     ..+-|+++++||+|....+.    .+|+++...... =+|. ||.+|  |.++|
T Consensus        95 ~T~~Hp~~v~~~~-~~~-----~~~~a~~L~~GD~l~~~~~~----~~v~~i~~~~~~~~vYd-LtV~~~H~f~a~  159 (168)
T d1dq3a1          95 TSPWHPFFVLTPD-FKI-----VEKRADELKEGDILIGGMGL----EVVRHITTTNEPRTFYD-LTVENYQNYLAG  159 (168)
T ss_dssp             ECTTCEEEEECTT-SCE-----EEEETTTCCTTCEECBCCHC----EEEEEEEEECSCEEEEE-EEETTTCEEEEE
T ss_pred             EecCceEEEecCC-CeE-----EEEEcccCCCCCEEEecCcc----eeEEEEEEeCCCceEEc-cEeCCCceEEEe
Confidence            3888988887532 233     56789999999999765543    334444443322 2443 34444  66666

>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]

Probab=85.63  E-value=0.45  Score=29.49  Aligned_cols=28  Identities=11%  Similarity=-0.011  Sum_probs=23.6

Q ss_pred             ceeeecccccCCEEEEeeCCceEEEEEEEEEE
Q psy16497         23 EYTYAERVRVNDSIIVHKNGKAYVERVTRLEN   54 (143)
Q Consensus        23 ~~vfA~~v~~Gd~v~v~~~~~l~~~rV~~V~~   54 (143)
                      .++-|+++|.|++|++.+    +|-+|++++.
T Consensus         3 ~p~~~~~lkkG~yv~i~g----~PCkI~~ist   30 (68)
T d1x6oa1           3 YPLAAGALKKGGYVCING----RPCKVIDLSV   30 (68)
T ss_dssp             EEEEGGGCCTTCEEEETT----EEEEEEEEEE
T ss_pred             eeeEcceeeECCEEEECC----EeeEEEEEee
Confidence            467899999999999854    7889888875