Psyllid ID: psy16509

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120---
Protein Sequence
MVSQIGQSRRPQKTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCVRIKPWANHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEVFSQCTHLS
Secondary Structure (PSIPRED)
cccHHHHccccHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEcccccccccccccccEEEEEEEHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEHHHcccc
Coil and Loop (DISEMBL)
mvsqigqsrrpqktlknerYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRnefigvtgptcvrikpwanHMFFYLfsteeeeeeeeeeeeeeeeeeeeeEEEVFSQCTHLS
Flexible Loop (DISEMBL)
mvsqigqsrrpqktlkneryrlKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGvtgptcvrikpwANHMFFYLFSTEEEEEEEEEEeeeeeeeeeeeeeevfsqcthls
Low Complexity Region (SEG)
MVSQIGQSRRPQKTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCVRIKPWANHMFFYLFSTeeeeeeeeeeeeeeeeeeeeeeeeVFSQCTHLS
Disordered region (IsUnstruct)
******************RYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCVRIKPWANHMFFYLF***********************************
Disordered Region (DISOPRED)
*******************YRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCVRIKPWANHMFFYLFSTEEEEEEEE**********EEEEEEVFSQCTHL*
Disordered Region (DISEMBL)
************KTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCVRIKPWANHMFFYLFST*********************************
Disordered Region (DISPRO)
****************NERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCVRIKPWANHMFFYLFSTEEEEEEEE*E****EEEEEEEEEEVFSQC**L*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVSQIGQSRRPQKTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCVRIKPWANHMFFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTHLS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	123	2.2.26 [Sep-21-2011]
Q6NTV6	1099	Inverted formin-2 OS=Xeno	N/A	N/A	0.447	0.050	0.418	5e-08
Q0IHV1	1380	Inverted formin-2 OS=Xeno	yes	N/A	0.447	0.039	0.418	7e-07
Q27J81	1249	Inverted formin-2 OS=Homo	no	N/A	0.455	0.044	0.375	8e-05
O60879	1101	Protein diaphanous homolo	no	N/A	0.414	0.046	0.411	0.0002
O70566	1098	Protein diaphanous homolo	no	N/A	0.406	0.045	0.42	0.0004

>sp|Q6NTV6|INF2_XENLA Inverted formin-2 OS=Xenopus laevis GN=inf2 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 39/55 (70%)

Query: 13  KTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIG 67
           K +KN++YR  V+ +EL +++ V Y   +L+ IN +I  T +L +R+++RNEFIG
Sbjct: 169 KVVKNQQYRFSVITNELSSSDNVPYMVTLLSVINAIIFGTEELRNRVQLRNEFIG 223

Xenopus laevis (taxid: 8355)

>sp|Q0IHV1|INF2_XENTR Inverted formin-2 OS=Xenopus tropicalis GN=inf2 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 38/55 (69%)

Query: 13  KTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIG 67
           K +KN++YR  V+++EL  ++ V Y   +L+ IN +I  T +L  R+++RNEFIG
Sbjct: 169 KAVKNQQYRFSVIMNELSTSDNVPYMVTLLSAINAIIFGTEELRKRVQLRNEFIG 223

Xenopus tropicalis (taxid: 8364)

>sp|Q27J81|INF2_HUMAN Inverted formin-2 OS=Homo sapiens GN=INF2 PE=1 SV=2

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 37/56 (66%)

Query: 13  KTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGV 68
           KT+ +++YR  +V++EL  ++ V Y   +L+ IN +I+    L  R ++RNEFIG+
Sbjct: 169 KTVCSQQYRFSIVMNELSGSDNVPYVVTLLSVINAVILGPEDLRARTQLRNEFIGL 224

Severs actin filaments and accelerates their polymerization and depolymerization.

Homo sapiens (taxid: 9606)

>sp|O60879|DIAP2_HUMAN Protein diaphanous homolog 2 OS=Homo sapiens GN=DIAPH2 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%)

Query: 16  KNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFI 66
           +N R R   +V+ L+N EA+  Q   + FIN L+ S  +L+ RI +RNEF+
Sbjct: 304 RNNRERFSPIVEGLENQEALQLQVACMQFINALVTSPYELDFRIHLRNEFL 354

Could be involved in oogenesis. Involved in the regulation of endosome dynamics. Implicated in a novel signal transduction pathway, in which isoform 3 and CSK are sequentially activated by RHOD to regulate the motility of early endosomes through interactions with the actin cytoskeleton.

Homo sapiens (taxid: 9606)

>sp|O70566|DIAP2_MOUSE Protein diaphanous homolog 2 OS=Mus musculus GN=Diaph2 PE=1 SV=2

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 17  NERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFI 66
           N R R   +V+ L+N EA+  Q   + FIN L+ S   L+ RI +RNEF+
Sbjct: 304 NNRERFSPIVEGLENNEALHLQVACMQFINALVTSPYDLDFRIHLRNEFL 353

May be involved in oogenesis.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
307181425	1797	FH2 domain-containing protein 1 [Campono	0.430	0.029	0.792	2e-17
340714225	1813	PREDICTED: hypothetical protein LOC10064	0.430	0.029	0.773	2e-17
350417242	1822	PREDICTED: hypothetical protein LOC10074	0.430	0.029	0.773	2e-17
189238218	2139	PREDICTED: similar to formin 3 CG33556-P	0.463	0.026	0.736	4e-17
328791069	1814	PREDICTED: LOW QUALITY PROTEIN: hypothet	0.430	0.029	0.754	6e-17
383863849	1801	PREDICTED: uncharacterized protein LOC10	0.430	0.029	0.754	1e-16
189241799	1361	PREDICTED: similar to formin 3 CG33556-P	0.447	0.040	0.745	2e-16
332026610	440	Inverted formin-2 [Acromyrmex echinatior	0.430	0.120	0.773	3e-15
357610020	1435	hypothetical protein KGM_19578 [Danaus p	0.439	0.037	0.666	3e-15
270008863	150	hypothetical protein TcasGA2_TC015469 [T	0.439	0.36	0.740	4e-15

>gi|307181425|gb|EFN69020.1| FH2 domain-containing protein 1 [Camponotus floridanus]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/53 (79%), Positives = 46/53 (86%)

Query: 16  KNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGV 68
           K ERYRL+VVVDELQ A A DYQT +LAFINCL+ISTP L DRIRIRNEFIG+
Sbjct: 64  KGERYRLRVVVDELQKATAEDYQTALLAFINCLVISTPVLKDRIRIRNEFIGL 116

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714225|ref|XP_003395631.1| PREDICTED: hypothetical protein LOC100649329 [Bombus terrestris]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/53 (77%), Positives = 48/53 (90%)

Query: 16  KNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGV 68
           KNERYRL++VV+ELQNA A DY+T +LAFINCL+ISTP L DRIRIRNEFIG+
Sbjct: 64  KNERYRLRIVVEELQNATAEDYRTALLAFINCLVISTPVLKDRIRIRNEFIGL 116

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417242|ref|XP_003491326.1| PREDICTED: hypothetical protein LOC100742673 [Bombus impatiens]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/53 (77%), Positives = 48/53 (90%)

Query: 16  KNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGV 68
           KNERYRL++VV+ELQNA A DY+T +LAFINCL+ISTP L DRIRIRNEFIG+
Sbjct: 64  KNERYRLRIVVEELQNATAEDYRTALLAFINCLVISTPVLKDRIRIRNEFIGL 116

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189238218|ref|XP_970252.2| PREDICTED: similar to formin 3 CG33556-PB [Tribolium castaneum]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/57 (73%), Positives = 47/57 (82%)

Query: 13  KTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVT 69
           K LK ERYRL V+V EL  A AVDYQT ++AFINCLIISTP+L DRIR RNEFIG+T
Sbjct: 73  KKLKGERYRLNVIVQELSRATAVDYQTALVAFINCLIISTPRLTDRIRRRNEFIGIT 129

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791069|ref|XP_003251512.1| PREDICTED: LOW QUALITY PROTEIN: hypothetical protein LOC408821 [Apis mellifera]

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 47/53 (88%)

Query: 16  KNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGV 68
           KNERYRL++VV+ELQNA   DY+T +LAFINCL+ISTP L DRIRIRNEFIG+
Sbjct: 64  KNERYRLRIVVEELQNATGEDYRTALLAFINCLVISTPVLKDRIRIRNEFIGL 116

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863849|ref|XP_003707392.1| PREDICTED: uncharacterized protein LOC100883788 [Megachile rotundata]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 47/53 (88%)

Query: 16  KNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGV 68
           K ERYRL++VV+ELQNA A DY+T +LAFINCL+ISTP L DRIRIRNEFIG+
Sbjct: 64  KGERYRLRIVVEELQNATAEDYRTALLAFINCLVISTPVLKDRIRIRNEFIGL 116

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241799|ref|XP_970228.2| PREDICTED: similar to formin 3 CG33556-PB [Tribolium castaneum] gi|270001160|gb|EEZ97607.1| hypothetical protein TcasGA2_TC011477 [Tribolium castaneum]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/55 (74%), Positives = 45/55 (81%)

Query: 13  KTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIG 67
           K LK ERYRL V+V EL  A AVDYQT ++AFINCLIISTP+L DRIR RNEFIG
Sbjct: 61  KKLKGERYRLNVIVQELSRATAVDYQTALVAFINCLIISTPRLTDRIRRRNEFIG 115

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026610|gb|EGI66719.1| Inverted formin-2 [Acromyrmex echinatior]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/53 (77%), Positives = 46/53 (86%)

Query: 16  KNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGV 68
           K ERYRL+VVVDELQ A + DYQT +LAFINCL+ISTP L DRIRIRNEFIG+
Sbjct: 144 KGERYRLRVVVDELQKATSEDYQTALLAFINCLVISTPVLKDRIRIRNEFIGL 196

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357610020|gb|EHJ66788.1| hypothetical protein KGM_19578 [Danaus plexippus]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 46/54 (85%)

Query: 13  KTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFI 66
           KTLK +RYRL VVV+EL+ A  +DY+T ++AF+NCLIIS P+L DRIR+RNEFI
Sbjct: 61  KTLKGDRYRLSVVVEELKQATTIDYKTALVAFVNCLIISAPRLPDRIRVRNEFI 114

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008863|gb|EFA05311.1| hypothetical protein TcasGA2_TC015469 [Tribolium castaneum]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/54 (74%), Positives = 44/54 (81%)

Query: 13  KTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFI 66
           K LK ERYRL V+V EL  A AVDYQT ++AFINCLIISTP+L DRIR RNEFI
Sbjct: 68  KKLKGERYRLNVIVQELSRATAVDYQTALVAFINCLIISTPRLTDRIRRRNEFI 121

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
FB|FBgn0053556	1717	form3 "formin 3" [Drosophila m	0.455	0.032	0.557	6.6e-11
UNIPROTKB|E1BWB9	1049	Gga.55708 "Uncharacterized pro	0.455	0.053	0.428	2e-07
UNIPROTKB|E2RNT5	294	INF2 "Uncharacterized protein"	0.455	0.190	0.357	5.5e-06
UNIPROTKB|Q27J81	1249	INF2 "Inverted formin-2" [Homo	0.455	0.044	0.375	2e-05
UNIPROTKB|F1PU24	1249	INF2 "Uncharacterized protein"	0.447	0.044	0.363	5.4e-05
UNIPROTKB|F1S1M8	716	DIAPH2 "Uncharacterized protei	0.414	0.071	0.411	7.4e-05
UNIPROTKB|F1MAJ2	1191	F1MAJ2 "Uncharacterized protei	0.455	0.047	0.357	8.3e-05
UNIPROTKB|E9PT22	1198	E9PT22 "Uncharacterized protei	0.455	0.046	0.357	8.4e-05
UNIPROTKB|A6NML8	1096	DIAPH2 "Protein diaphanous hom	0.414	0.046	0.411	9.6e-05
UNIPROTKB|C9J6U3	1097	DIAPH2 "Protein diaphanous hom	0.414	0.046	0.411	9.6e-05

FB|FBgn0053556 form3 "formin 3" [Drosophila melanogaster (taxid:7227)]

 Score = 167 (63.8 bits), Expect = 6.6e-11, P = 6.6e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)

Query:    13 KTLKNERYRLKVVVDELQNAEA-----VDYQTVILAFINCLIISTPQLNDRIRIRNEFIG 67
             K LK +RYR K+V++EL+ + A     +DYQ  +LAFINC+IIS   L +RIRIRNEFIG
Sbjct:    61 KNLKKQRYRFKIVINELELSSAAAHPPLDYQAALLAFINCVIISAATLQERIRIRNEFIG 120

Query:    68 V 68
             +
Sbjct:   121 L 121

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0007424 "open tracheal system development" evidence=NAS

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

UNIPROTKB|E1BWB9 Gga.55708 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 132 (51.5 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 24/56 (42%), Positives = 37/56 (66%)

Query:    13 KTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGV 68
             K +KN++YR  V+++EL N + V Y   +L+ IN +I+    L  R +IRNEFIG+
Sbjct:   170 KNVKNQQYRFSVIMNELSNTDNVPYMVTLLSAINAIILGKEDLRTRTQIRNEFIGL 225

GO:0003779 "actin binding" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

UNIPROTKB|E2RNT5 INF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 111 (44.1 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 20/56 (35%), Positives = 36/56 (64%)

Query:    13 KTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGV 68
             KT+ N++YR  V+++EL +++ V Y   +L+ IN +I+    L  R ++R EF G+
Sbjct:   169 KTVCNQQYRFSVIMNELSDSDNVPYVVTLLSVINAIILGPEDLRTRTQLRGEFTGL 224

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|Q27J81 INF2 "Inverted formin-2" [Homo sapiens (taxid:9606)]

 Score = 114 (45.2 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 21/56 (37%), Positives = 37/56 (66%)

Query:    13 KTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGV 68
             KT+ +++YR  +V++EL  ++ V Y   +L+ IN +I+    L  R ++RNEFIG+
Sbjct:   169 KTVCSQQYRFSIVMNELSGSDNVPYVVTLLSVINAVILGPEDLRARTQLRNEFIGL 224

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|F1PU24 INF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 110 (43.8 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 20/55 (36%), Positives = 35/55 (63%)

Query:    13 KTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIG 67
             KT+ N++YR  V+++EL +++ V Y   +L+ IN +I+    L  R ++R EF G
Sbjct:   169 KTVCNQQYRFSVIMNELSDSDNVPYVVTLLSVINAIILGPEDLRTRTQLRGEFTG 223

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|F1S1M8 DIAPH2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 106 (42.4 bits), Expect = 7.4e-05, P = 7.4e-05
 Identities = 21/51 (41%), Positives = 32/51 (62%)

Query:    16 KNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFI 66
             +N R R   +V+ L+N EA+  Q   + FIN L+ S  +L+ RI +RNEF+
Sbjct:    64 RNNRERFSPIVEGLENHEALQLQVACMQFINALVTSPYELDFRIHLRNEFL 114

GO:0030041 "actin filament polymerization" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

UNIPROTKB|F1MAJ2 F1MAJ2 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 108 (43.1 bits), Expect = 8.3e-05, P = 8.3e-05
 Identities = 20/56 (35%), Positives = 37/56 (66%)

Query:    13 KTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGV 68
             K + +++YR  V+++EL +++ V Y   +L+ IN LI+    L  R ++R+EFIG+
Sbjct:   169 KMVCSQQYRFSVIMNELSDSDNVPYVVTLLSVINALILGPEDLRTRAQLRSEFIGL 224

GO:0003779 "actin binding" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

UNIPROTKB|E9PT22 E9PT22 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 108 (43.1 bits), Expect = 8.4e-05, P = 8.4e-05
 Identities = 20/56 (35%), Positives = 37/56 (66%)

Query:    13 KTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGV 68
             K + +++YR  V+++EL +++ V Y   +L+ IN LI+    L  R ++R+EFIG+
Sbjct:   169 KMVCSQQYRFSVIMNELSDSDNVPYVVTLLSVINALILGPEDLRTRAQLRSEFIGL 224

GO:0003779 "actin binding" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

UNIPROTKB|A6NML8 DIAPH2 "Protein diaphanous homolog 2" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 9.6e-05, P = 9.6e-05
 Identities = 21/51 (41%), Positives = 32/51 (62%)

Query:    16 KNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFI 66
             +N R R   +V+ L+N EA+  Q   + FIN L+ S  +L+ RI +RNEF+
Sbjct:   304 RNNRERFSPIVEGLENQEALQLQVACMQFINALVTSPYELDFRIHLRNEFL 354

GO:0003779 "actin binding" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|C9J6U3 DIAPH2 "Protein diaphanous homolog 2" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 9.6e-05, P = 9.6e-05
 Identities = 21/51 (41%), Positives = 32/51 (62%)

Query:    16 KNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFI 66
             +N R R   +V+ L+N EA+  Q   + FIN L+ S  +L+ RI +RNEF+
Sbjct:   300 RNNRERFSPIVEGLENQEALQLQVACMQFINALVTSPYELDFRIHLRNEFL 350

GO:0003779 "actin binding" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	123
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	7e-09
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	1e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	4e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-07
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	2e-05
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	8e-05
pfam04712	481	pfam04712, Radial_spoke, Radial spokehead-like pro	1e-04
pfam04712	481	pfam04712, Radial_spoke, Radial spokehead-like pro	1e-04
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	2e-04
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	2e-04
pfam04712	481	pfam04712, Radial_spoke, Radial spokehead-like pro	2e-04
TIGR03685	105	TIGR03685, L12P_arch, 50S ribosomal protein L12P	2e-04
PRK06402	106	PRK06402, rpl12p, 50S ribosomal protein L12P; Revi	2e-04
pfam06367	197	pfam06367, Drf_FH3, Diaphanous FH3 Domain	2e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	2e-04
pfam03066	146	pfam03066, Nucleoplasmin, Nucleoplasmin	2e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	3e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	3e-04
pfam00428	88	pfam00428, Ribosomal_60s, 60s Acidic ribosomal pro	3e-04
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	4e-04
pfam04712	481	pfam04712, Radial_spoke, Radial spokehead-like pro	4e-04
TIGR03685	105	TIGR03685, L12P_arch, 50S ribosomal protein L12P	4e-04
pfam03066	146	pfam03066, Nucleoplasmin, Nucleoplasmin	4e-04
TIGR03685	105	TIGR03685, L12P_arch, 50S ribosomal protein L12P	5e-04
PRK06402	106	PRK06402, rpl12p, 50S ribosomal protein L12P; Revi	5e-04
pfam03066	146	pfam03066, Nucleoplasmin, Nucleoplasmin	5e-04
PRK06402	106	PRK06402, rpl12p, 50S ribosomal protein L12P; Revi	6e-04
pfam04712	481	pfam04712, Radial_spoke, Radial spokehead-like pro	7e-04
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	8e-04
pfam01056	329	pfam01056, Myc_N, Myc amino-terminal region	8e-04
pfam03066	146	pfam03066, Nucleoplasmin, Nucleoplasmin	9e-04
COG1614	470	COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthas	0.001
COG1614	470	COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthas	0.001
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	0.001
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	0.002
PRK06402	106	PRK06402, rpl12p, 50S ribosomal protein L12P; Revi	0.002
pfam03066	146	pfam03066, Nucleoplasmin, Nucleoplasmin	0.002
pfam00428	88	pfam00428, Ribosomal_60s, 60s Acidic ribosomal pro	0.002
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	0.002
PRK04456	463	PRK04456, PRK04456, acetyl-CoA decarbonylase/synth	0.002
pfam03344	715	pfam03344, Daxx, Daxx Family	0.002
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	0.003
pfam00428	88	pfam00428, Ribosomal_60s, 60s Acidic ribosomal pro	0.003
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	0.003
pfam03985	431	pfam03985, Paf1, Paf1	0.003
COG2058	109	COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP	0.003
pfam03066	146	pfam03066, Nucleoplasmin, Nucleoplasmin	0.004
pfam03344	715	pfam03344, Daxx, Daxx Family	0.004
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	0.004
COG2058	109	COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP	0.004
cd05832	106	cd05832, Ribosomal_L12p, Ribosomal protein L12p	0.004
pfam12446	133	pfam12446, DUF3682, Protein of unknown function (D	0.004
PTZ00135	310	PTZ00135, PTZ00135, 60S acidic ribosomal protein P	0.004

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 51.9 bits (124), Expect = 7e-09
 Identities = 25/26 (96%), Positives = 25/26 (96%)

Query: 89  STEEEEEEEEEEEEEEEEEEEEEEEE 114
           S EEEEEEEEEEEEEEEEEEEEEEEE
Sbjct: 863 SEEEEEEEEEEEEEEEEEEEEEEEEE 888

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 51.1 bits (122), Expect = 1e-08
 Identities = 24/24 (100%), Positives = 24/24 (100%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEE 114
           EEEEEEEEEEEEEEEEEEEEEEEE
Sbjct: 866 EEEEEEEEEEEEEEEEEEEEEEEE 889

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 24/27 (88%), Positives = 24/27 (88%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEEVFS 117
           EEEEEEEEEEEEEEEEEEEEE EE  S
Sbjct: 869 EEEEEEEEEEEEEEEEEEEEENEEPLS 895

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 50.0 bits (119), Expect = 3e-08
 Identities = 23/24 (95%), Positives = 23/24 (95%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEE 114
           EEEEEEEEEEEEEEEEEEEEEEE 
Sbjct: 867 EEEEEEEEEEEEEEEEEEEEEEEN 890

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 49.6 bits (118), Expect = 4e-08
 Identities = 23/24 (95%), Positives = 23/24 (95%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEE 114
           EEEEEEEEEEEEEEEEEEEEEE E
Sbjct: 868 EEEEEEEEEEEEEEEEEEEEEENE 891

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 47.7 bits (113), Expect = 2e-07
 Identities = 22/24 (91%), Positives = 23/24 (95%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEE 114
           + EEEEEEEEEEEEEEEEEEEEEE
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEE 885

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 14/26 (53%), Positives = 25/26 (96%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEEVF 116
           ++E+E+E++++EE++EEEEEEEEE+ 
Sbjct: 156 DDEDEDEDDDDEEDDEEEEEEEEEIK 181

Length = 2849

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 21/28 (75%), Positives = 22/28 (78%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
            EEEEEEEEE  EEEEEEEEEEE  F +
Sbjct: 305 PEEEEEEEEEVPEEEEEEEEEEERTFEE 332

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 18/25 (72%), Positives = 21/25 (84%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEEV 115
           +EEEE+E+EEEEEEEEE EE E E 
Sbjct: 348 DEEEEQEDEEEEEEEEEPEEPEPEE 372

This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologues, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene. Length = 481

>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 19/25 (76%), Positives = 21/25 (84%)

Query: 90  TEEEEEEEEEEEEEEEEEEEEEEEE 114
            EEEE+E+EEEEEEEEE EE E EE
Sbjct: 348 DEEEEQEDEEEEEEEEEPEEPEPEE 372

This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologues, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene. Length = 481

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 13/27 (48%), Positives = 25/27 (92%)

Query: 88  FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
           F  ++++E+E+E++++EE++EEEEEEE
Sbjct: 151 FVIDDDDEDEDEDDDDEEDDEEEEEEE 177

Length = 2849

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 21/24 (87%), Positives = 21/24 (87%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEE 114
           E EEEEEEEEE  EEEEEEEEEEE
Sbjct: 304 EPEEEEEEEEEVPEEEEEEEEEEE 327

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 85  FYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
           +     ++EEEE+E+EEEEEEEEE EE E 
Sbjct: 341 WVNPEQKDEEEEQEDEEEEEEEEEPEEPEP 370

This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologues, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene. Length = 481

>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 19/24 (79%), Positives = 19/24 (79%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEE 114
               EEEEEEEEEEEEEEEE EEE
Sbjct: 72  AAAAEEEEEEEEEEEEEEEESEEE 95

This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome. Length = 105

>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 15/24 (62%), Positives = 18/24 (75%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEE 114
                EE++EEEEEEEE+EE EEE
Sbjct: 73  AAAAAEEKKEEEEEEEEKEESEEE 96

Length = 106

>gnl|CDD|219000 pfam06367, Drf_FH3, Diaphanous FH3 Domain

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 13 KTLKNERYRLKVVVDELQNAEA--VDYQTVILAFINCLIISTPQLNDRIRIRNEFI 66
          K +  ER R + +V  L ++E   V+Y+   + FIN L+ S   LN R+ +R+EF 
Sbjct: 14 KEVCRERGRFRSLVGALDSSENDNVEYKVATMQFINALVNSPEDLNFRLHLRSEFT 69

This region is found in the Formin-like and and diaphanous proteins. Length = 197

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 17/24 (70%), Positives = 18/24 (75%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEE 114
           +    EEEEEEEEEEEEEE  EEE
Sbjct: 297 QAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 13/26 (50%), Positives = 24/26 (92%)

Query: 90  TEEEEEEEEEEEEEEEEEEEEEEEEV 115
           ++++EE+EEEE++EE+++E+E EEE 
Sbjct: 114 SDDDEEDEEEEDDEEDDDEDESEEEE 139

Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays. Length = 146

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 16/26 (61%), Positives = 18/26 (69%)

Query: 89  STEEEEEEEEEEEEEEEEEEEEEEEE 114
           +  +    EEEEEEEEEEEEEE  EE
Sbjct: 294 AQAQAAAAEEEEEEEEEEEEEEPSEE 319

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 17/23 (73%), Positives = 18/23 (78%)

Query: 89  STEEEEEEEEEEEEEEEEEEEEE 111
           +   EEEEEEEEEEEEEE  EEE
Sbjct: 298 AAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 92  EEEEEEEEEEEEEEEEEEEEEEEVFS 117
                 EEE++EEEEEEEE+++  F 
Sbjct: 61  AAAAAAEEEKKEEEEEEEEDDDMGFG 86

This family includes archaebacterial L12, eukaryotic P0, P1 and P2. Length = 88

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 21/26 (80%), Positives = 21/26 (80%)

Query: 89  STEEEEEEEEEEEEEEEEEEEEEEEE 114
           S  E EEEEEEEEE  EEEEEEEEEE
Sbjct: 301 SPPEPEEEEEEEEEVPEEEEEEEEEE 326

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 18/24 (75%), Positives = 20/24 (83%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEE 114
           EEE+E+EEEEEEEEE EE E EE 
Sbjct: 350 EEEQEDEEEEEEEEEPEEPEPEEG 373

This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologues, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene. Length = 481

>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P

 Score = 36.6 bits (85), Expect = 4e-04
 Identities = 19/23 (82%), Positives = 19/23 (82%)

Query: 90  TEEEEEEEEEEEEEEEEEEEEEE 112
              EEEEEEEEEEEEEEEE EEE
Sbjct: 73  AAAEEEEEEEEEEEEEEEESEEE 95

This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome. Length = 105

>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 14/25 (56%), Positives = 23/25 (92%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEEV 115
           ++EE+EEEE++EE+++E+E EEEE 
Sbjct: 116 DDEEDEEEEDDEEDDDEDESEEEES 140

Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays. Length = 146

>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 18/24 (75%), Positives = 18/24 (75%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEE 114
                EEEEEEEEEEEEEEEE EE
Sbjct: 71  AAAAAEEEEEEEEEEEEEEEESEE 94

This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome. Length = 105

>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed

 Score = 36.5 bits (85), Expect = 5e-04
 Identities = 14/24 (58%), Positives = 17/24 (70%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEE 114
                 EE++EEEEEEEE+EE EE
Sbjct: 72  AAAAAAEEKKEEEEEEEEKEESEE 95

Length = 106

>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 14/27 (51%), Positives = 22/27 (81%)

Query: 87  LFSTEEEEEEEEEEEEEEEEEEEEEEE 113
               +EE+EEEE++EE+++E+E EEEE
Sbjct: 113 ESDDDEEDEEEEDDEEDDDEDESEEEE 139

Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays. Length = 146

>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed

 Score = 36.5 bits (85), Expect = 6e-04
 Identities = 15/24 (62%), Positives = 18/24 (75%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEE 114
             EE++EEEEEEEE+EE EEE   
Sbjct: 76  AAEEKKEEEEEEEEKEESEEEAAA 99

Length = 106

>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEEVFSQCT 120
           E+E+EEEEEEEEE EE E EE   + +  +
Sbjct: 352 EQEDEEEEEEEEEPEEPEPEEGPPLLTPIS 381

This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologues, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene. Length = 481

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 21/28 (75%), Positives = 21/28 (75%), Gaps = 1/28 (3%)

Query: 89  STEEEEEEEEEEEEEEEEEEEEE-EEEV 115
             EEEEEE  EEEEEEEEEEE   EEEV
Sbjct: 307 EEEEEEEEVPEEEEEEEEEEERTFEEEV 334

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region

 Score = 37.2 bits (86), Expect = 8e-04
 Identities = 17/27 (62%), Positives = 21/27 (77%)

Query: 89  STEEEEEEEEEEEEEEEEEEEEEEEEV 115
           S+   + E EE+EEEEEEEEEEEE +V
Sbjct: 220 SSSGSDSESEEDEEEEEEEEEEEEIDV 246

The myc family belongs to the basic helix-loop-helix leucine zipper class of transcription factors, see pfam00010. Myc forms a heterodimer with Max, and this complex regulates cell growth through direct activation of genes involved in cell replication. Mutations in the C-terminal 20 residues of this domain cause unique changes in the induction of apoptosis, transformation, and G2 arrest. Length = 329

>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin

 Score = 36.5 bits (85), Expect = 9e-04
 Identities = 13/28 (46%), Positives = 23/28 (82%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
            +++EE+EEEE++EE+++E+E EE  S 
Sbjct: 114 SDDDEEDEEEEDDEEDDDEDESEEEESP 141

Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays. Length = 146

>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit [Energy production and conversion]

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 17/25 (68%), Positives = 17/25 (68%)

Query: 90  TEEEEEEEEEEEEEEEEEEEEEEEE 114
             EEEEEEEEEEEEE  E E   EE
Sbjct: 401 WAEEEEEEEEEEEEEAAEAEAPMEE 425

Length = 470

>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit [Energy production and conversion]

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 18/25 (72%), Positives = 18/25 (72%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEEV 115
           EEEEEEEEEEEEE  E E   EE V
Sbjct: 403 EEEEEEEEEEEEEAAEAEAPMEEPV 427

Length = 470

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 15/30 (50%), Positives = 22/30 (73%)

Query: 86  YLFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
                 E+ +EE+E++EEEEEEEEEE+E+ 
Sbjct: 160 LKELEAEDVDEEDEKDEEEEEEEEEEDEDF 189

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 17/25 (68%), Positives = 17/25 (68%)

Query: 90  TEEEEEEEEEEEEEEEEEEEEEEEE 114
                E EEEEEEEEE  EEEEEEE
Sbjct: 299 PPSPPEPEEEEEEEEEVPEEEEEEE 323

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEE 114
                  EE++EEEEEEEE+EE E
Sbjct: 71  AAAAAAAEEKKEEEEEEEEKEESE 94

Length = 106

>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 12/33 (36%), Positives = 22/33 (66%)

Query: 82  HMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
                    E +++EE+EEEE++EE+++E+E E
Sbjct: 104 QHLVASEEDESDDDEEDEEEEDDEEDDDEDESE 136

Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays. Length = 146

>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 91  EEEEEEEEEEEEEEEEEEEEE 111
                 EEE++EEEEEEEE++
Sbjct: 61  AAAAAAEEEKKEEEEEEEEDD 81

This family includes archaebacterial L12, eukaryotic P0, P1 and P2. Length = 88

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 17/26 (65%), Positives = 23/26 (88%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEEVF 116
           E E+ +EE+E++EEEEEEEEEE+E F
Sbjct: 164 EAEDVDEEDEKDEEEEEEEEEEDEDF 189

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex subunit beta; Reviewed

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 16/26 (61%), Positives = 17/26 (65%)

Query: 92  EEEEEEEEEEEEEEEEEEEEEEEVFS 117
             EEEEEEEEEEEEEEE   E  +  
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMP 428

Length = 463

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 21/28 (75%), Positives = 24/28 (85%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
           EEEEEEEE+E EEEE E+EEEEEEV + 
Sbjct: 452 EEEEEEEEQESEEEEGEDEEEEEEVEAD 479

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 16/26 (61%), Positives = 18/26 (69%)

Query: 89  STEEEEEEEEEEEEEEEEEEEEEEEE 114
           S + +    EEEEEEEEEEEEEE  E
Sbjct: 293 SAQAQAAAAEEEEEEEEEEEEEEPSE 318

Length = 330

>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein

 Score = 34.1 bits (79), Expect = 0.003
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 89  STEEEEEEEEEEEEEEEEEEEE 110
           +      EEE++EEEEEEEE++
Sbjct: 60  AAAAAAAEEEKKEEEEEEEEDD 81

This family includes archaebacterial L12, eukaryotic P0, P1 and P2. Length = 88

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 14/27 (51%), Positives = 20/27 (74%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEEVFS 117
            ++EEEE+EEEEEEE+E+E   +E   
Sbjct: 388 RDDEEEEDEEEEEEEDEDEGPSKEHSD 414

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 88  FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
           F   +E+E+EEEE+  +E EEEE E+ 
Sbjct: 367 FEEVDEDEDEEEEQRSDEHEEEEGEDS 393

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEEVF 116
            E   E +E EEEE+EEE EEE +  
Sbjct: 77  AEAAAEADEAEEEEKEEEAEEESDDD 102

Length = 109

>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 13/30 (43%), Positives = 26/30 (86%)

Query: 87  LFSTEEEEEEEEEEEEEEEEEEEEEEEEVF 116
           L ++EE+E +++EE+EEEE++EE+++E+  
Sbjct: 106 LVASEEDESDDDEEDEEEEDDEEDDDEDES 135

Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays. Length = 146

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 20/25 (80%), Positives = 22/25 (88%)

Query: 90  TEEEEEEEEEEEEEEEEEEEEEEEE 114
            EEEEEEEEEE+E EEEE E+EEEE
Sbjct: 449 EEEEEEEEEEEQESEEEEGEDEEEE 473

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 35.1 bits (81), Expect = 0.004
 Identities = 16/29 (55%), Positives = 23/29 (79%)

Query: 89  STEEEEEEEEEEEEEEEEEEEEEEEEVFS 117
           +TE ++EEEE+EEEEEEE+E+E   +  S
Sbjct: 385 NTERDDEEEEDEEEEEEEDEDEGPSKEHS 413

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]

 Score = 33.9 bits (78), Expect = 0.004
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEE 114
             E   E +E EEEE+EEE EEE 
Sbjct: 76  GAEAAAEADEAEEEEKEEEAEEES 99

Length = 109

>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p

 Score = 34.4 bits (79), Expect = 0.004
 Identities = 16/24 (66%), Positives = 22/24 (91%)

Query: 91  EEEEEEEEEEEEEEEEEEEEEEEE 114
            EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 74  AEEKAEEKEEEKKKEEEKEEEEEE 97

This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly interact with rRNA. Archaeal L12p is believed to function in a similar fashion. However, hybrid ribosomes containing the large subunit from E. coli with an archaeal stalk are able to bind archaeal and eukaryotic elongation factors but not bacterial elongation factors. In several mesophilic and thermophilic archaeal species, the binding of 23S rRNA to protein L11 and to the L10/L12p pentameric complex was found to be temperature-dependent and cooperative. Length = 106

>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682)

 Score = 34.4 bits (79), Expect = 0.004
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 89  STEEEEEEEEEEEEEEEEEEEEEEEEVFSQCTH 121
            T    +EEEEEEEE E++++ +E +V     H
Sbjct: 90  GTGHTRQEEEEEEEENEKQQQSDEAQVQQHQQH 122

This domain family is found in eukaryotes, and is typically between 125 and 136 amino acids in length. Length = 133

>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 67  GVTGPTCVRIK-PWANHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEVFS 117
           G T P   +IK   AN       +               EEEEEEE++  F 
Sbjct: 256 GFTFPLAEKIKEALANPSAAAAAAAAAAAAAAAAAAAPAEEEEEEEDDMGFG 307

Length = 310

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	123
PF06367	197	Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR01047	99.8
KOG1924|consensus	1102		99.68
KOG1923|consensus	830		98.91

>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []

Probab=99.80  E-value=2e-20  Score=141.38  Aligned_cols=87  Identities=31%  Similarity=0.402  Sum_probs=71.6

Q ss_pred             hhhhHhhhccccchHHHHHHhh--hccChhHHHHHHHHhhhhhcCCCCccchhhhhhhhccCCcchhhhcCccccc----
Q psy16509          9 RRPQKTLKNERYRLKVVVDELQ--NAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCVRIKPWANH----   82 (123)
Q Consensus         9 ~~~fK~~~~Er~RF~~IV~~L~--~~~nv~ykvacMqFINalI~s~edL~fRihLRnEF~~LGL~d~L~~~~~~~~----   82 (123)
                      +.+||..++++.||+++|..|+  .+..++|+++||+|||+||++++++++|+|||+||+++||.++|.+.++-..    
T Consensus        10 ~~~~~~~~~e~~RF~~lv~~l~~~~~~~~e~~~~~l~~IN~li~~~~d~~~R~~lr~e~~~~GL~~il~~l~~~~~~~L~   89 (197)
T PF06367_consen   10 FDNFKEVKGERGRFQSLVGALESVDSSDIEYKTACLQFINSLINSPEDLNFRVHLRNEFERLGLLDILEKLRNLEDDDLQ   89 (197)
T ss_dssp             HHHHHHHHT-S-TTHHHHHHCS--TTS-HHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHTTHHHHHHHHTTS--HHHH
T ss_pred             HHHHHHHhCCcccHHHHHHHHHccccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCcHHHHHHHHhcchHHHH
Confidence            6999999999999999999998  5678999999999999999999999999999999999999998887665533    


Q ss_pred             cceeecccchhhh
Q psy16509         83 MFFYLFSTEEEEE   95 (123)
Q Consensus        83 ~~f~lfs~eeE~~   95 (123)
                      .++..|....+++
T Consensus        90 ~Qi~~f~~~~~~D  102 (197)
T PF06367_consen   90 EQIDIFEENEEED  102 (197)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            5777776655433

Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1924|consensus

Probab=99.68  E-value=9e-18  Score=154.42  Aligned_cols=83  Identities=24%  Similarity=0.330  Sum_probs=72.8

Q ss_pred             hccccchHHHHHHhhhccChhHHHHHHHHhhhhhcCCCCccchhhhhhhhccCCcchhhhcCcccc----ccceeecccc
Q psy16509         16 KNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCVRIKPWAN----HMFFYLFSTE   91 (123)
Q Consensus        16 ~~Er~RF~~IV~~L~~~~nv~ykvacMqFINalI~s~edL~fRihLRnEF~~LGL~d~L~~~~~~~----~~~f~lfs~e   91 (123)
                      .+...||+|||++|+..+.+.++||||||||||+++++||+||+|||+||++.||.++|......+    .++|.+|...
T Consensus       283 ~~~veRF~piv~gl~~~e~~~l~vacmq~INal~t~p~dldfRlhlR~E~mr~gL~~~l~~l~~i~n~~ldvqlkvfdE~  362 (1102)
T KOG1924|consen  283 AKPVERFRPIVEGLDFLEKQQLQVACMQFINALVTSPSDLDFRLHLRSEFMRDGLHKYLPDLTEINNDILDVQLKVFDEH  362 (1102)
T ss_pred             hcchhhhhhHHHHHhccchHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHhHHHHHHHhhhhccHHHHHHHHHHhhh
Confidence            467899999999999999999999999999999999999999999999999999999988554433    3799999988


Q ss_pred             hhhhhhh
Q psy16509         92 EEEEEEE   98 (123)
Q Consensus        92 eE~~~~~   98 (123)
                      -|++=++
T Consensus       363 ~e~Dl~e  369 (1102)
T KOG1924|consen  363 KEDDLEE  369 (1102)
T ss_pred             hhhhHHH
Confidence            7665443

>KOG1923|consensus

Probab=98.91  E-value=3.4e-10  Score=104.17  Aligned_cols=70  Identities=14%  Similarity=0.148  Sum_probs=63.6

Q ss_pred             hhhhHhhhccccchHHHHHHhhh--ccChhHHHHHHHHhhhhhcCCCCccchhhhhhhhccCCcchhhhcCcc
Q psy16509          9 RRPQKTLKNERYRLKVVVDELQN--AEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCVRIKPW   79 (123)
Q Consensus         9 ~~~fK~~~~Er~RF~~IV~~L~~--~~nv~ykvacMqFINalI~s~edL~fRihLRnEF~~LGL~d~L~~~~~   79 (123)
                      -.+|+.+|+++.||+++|..+..  .-|+++++|||||+|.+++ +++++||+|++|||+.+||+.+|+....
T Consensus        60 ~~~f~~v~qe~~rf~~lm~~~s~~~~fn~df~~a~lQf~~ifv~-v~d~n~rvhlQye~t~lgld~yi~~~~e  131 (830)
T KOG1923|consen   60 APVFSKVNQEPRRFNTLMYVHSLPPFFNADFSAAKLQFYDVFVG-VPDENFRVHLQYEATHLGLDKYIDAPPE  131 (830)
T ss_pred             CcchhhhhcCccccccccccccCccccChHHHHHHHHHHHHHhc-chhhhhHHHhhhHHHHHhhhhhhhcchh
Confidence            37899999999999999998853  4589999999999999999 9999999999999999999999986553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	123
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	99.83
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	99.77
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	99.76
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	92.7
4dvg_B	353	Diaphanous protein; cytoskeleton, armadillo repeat	91.05

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=99.83  E-value=5.8e-22  Score=153.78  Aligned_cols=92  Identities=18%  Similarity=0.293  Sum_probs=77.1

Q ss_pred             ccc-cc-cc-----hhhhHhhhccccchHHHHHHhhhccChhHHHHHHHHhhhhhcCCCCccchhhhhhhhccCCcchhh
Q psy16509          2 VSQ-IG-QS-----RRPQKTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCV   74 (123)
Q Consensus         2 v~~-~g-~~-----~~~fK~~~~Er~RF~~IV~~L~~~~nv~ykvacMqFINalI~s~edL~fRihLRnEF~~LGL~d~L   74 (123)
                      +|. .| |.     +.+|+. ++++.||+++|++|+++.+++|++|||+|||+||++|+++++|+|||+||+++||.++|
T Consensus       126 ~~~~~G~~~~VL~Al~~~~~-~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il  204 (233)
T 2f31_A          126 LPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL  204 (233)
T ss_dssp             CSSSSCHHHHHHHHHHHHHH-HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHH
T ss_pred             CCCCCChHHHHHHHHHHHHH-hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH
Confidence            455 58 76     688876 57999999999999988899999999999999999999999999999999999999988


Q ss_pred             hcCccccc----cceeecccchhh
Q psy16509         75 RIKPWANH----MFFYLFSTEEEE   94 (123)
Q Consensus        75 ~~~~~~~~----~~f~lfs~eeE~   94 (123)
                      ++.+....    .|+..|....++
T Consensus       205 ~~l~~~~~~~L~~Qi~~fe~~~~e  228 (233)
T 2f31_A          205 QELREIENEDMKVQLCVFDEQGDE  228 (233)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHh
Confidence            87664332    577677554433

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=99.77  E-value=1.2e-19  Score=150.82  Aligned_cols=91  Identities=18%  Similarity=0.283  Sum_probs=77.0

Q ss_pred             ccc-cc-cc-----hhhhHhhhccccchHHHHHHhhhccChhHHHHHHHHhhhhhcCCCCccchhhhhhhhccCCcchhh
Q psy16509          2 VSQ-IG-QS-----RRPQKTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCV   74 (123)
Q Consensus         2 v~~-~g-~~-----~~~fK~~~~Er~RF~~IV~~L~~~~nv~ykvacMqFINalI~s~edL~fRihLRnEF~~LGL~d~L   74 (123)
                      +|. .| |.     +.+|+. ++++.||++||++|+++.+++|++|||+|||+||++++++++|+|||+||+++||.++|
T Consensus       130 ~~~~~G~~~~VL~Al~~~~~-~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il  208 (386)
T 2bnx_A          130 LPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL  208 (386)
T ss_dssp             CCSSTTHHHHHHHHHHHHHH-HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHH
T ss_pred             CCCCCChHHHHHHHHHHHHH-hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH
Confidence            454 47 76     588876 57999999999999988999999999999999999999999999999999999999988


Q ss_pred             hcCccccc----cceeecccchh
Q psy16509         75 RIKPWANH----MFFYLFSTEEE   93 (123)
Q Consensus        75 ~~~~~~~~----~~f~lfs~eeE   93 (123)
                      .+.+....    .++..|....+
T Consensus       209 ~~Lr~~~~~~L~~Qi~~fe~~~~  231 (386)
T 2bnx_A          209 QELREIENEDMKVQLCVFDEQGD  231 (386)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHhccCChhHHHHHHHHHHHHH
Confidence            87665433    57777765433

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=99.76  E-value=1.4e-19  Score=150.58  Aligned_cols=90  Identities=18%  Similarity=0.273  Sum_probs=77.8

Q ss_pred             ccc-----hhhhHhhhccccchHHHHHHhhhccChhHHHHHHHHhhhhhcCCCCccchhhhhhhhccCCcchhhhcCccc
Q psy16509          6 GQS-----RRPQKTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCVRIKPWA   80 (123)
Q Consensus         6 g~~-----~~~fK~~~~Er~RF~~IV~~L~~~~nv~ykvacMqFINalI~s~edL~fRihLRnEF~~LGL~d~L~~~~~~   80 (123)
                      ||.     +.+||. ++++.||++||++|++..+++|++|||+|||+||++++++++|+|||+||+++||.++|.+.+..
T Consensus       198 G~~~VL~Al~~~~~-~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~  276 (383)
T 3eg5_B          198 MNERVLEAMTERAE-MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREI  276 (383)
T ss_dssp             HHHHHHHHHHHHHH-HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTS
T ss_pred             cHHHHHHHHHHHHH-hCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcC
Confidence            477     689998 89999999999999988899999999999999999999999999999999999999988876644


Q ss_pred             cc----cceeecccchhhhh
Q psy16509         81 NH----MFFYLFSTEEEEEE   96 (123)
Q Consensus        81 ~~----~~f~lfs~eeE~~~   96 (123)
                      ..    .|+..|....++++
T Consensus       277 ~~~~L~~Qi~~fe~~~~eD~  296 (383)
T 3eg5_B          277 ENEDMKVQLCVFDEQGDEDF  296 (383)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHhH
Confidence            33    67888876544433

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=92.70  E-value=0.072  Score=44.54  Aligned_cols=73  Identities=11%  Similarity=0.069  Sum_probs=56.8

Q ss_pred             cccchHHHHHHhh--hccChhHHHHHHHHhhhhhcCCCCccchhhhhhhhccCCcchhhhc----Ccc--ccccceeecc
Q psy16509         18 ERYRLKVVVDELQ--NAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCVRI----KPW--ANHMFFYLFS   89 (123)
Q Consensus        18 Er~RF~~IV~~L~--~~~nv~ykvacMqFINalI~s~edL~fRihLRnEF~~LGL~d~L~~----~~~--~~~~~f~lfs   89 (123)
                      ...+|+.||.-|+  .+.+.++++.+|++||+++.+.++=+.|-.+...+-.+|+-..+..    ...  ....||++|-
T Consensus       252 ~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Ql~iyE  331 (339)
T 3dad_A          252 GAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQLVLYE  331 (339)
T ss_dssp             CCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            3446999999996  3568999999999999999998888878899999999999776554    211  2336887774


Q ss_pred             c
Q psy16509         90 T   90 (123)
Q Consensus        90 ~   90 (123)
                      .
T Consensus       332 ~  332 (339)
T 3dad_A          332 N  332 (339)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4dvg_B Diaphanous protein; cytoskeleton, armadillo repeat, GTPase-binding domain, nucle binding, signaling protein, lipoprotein; HET: GSP; 2.60A {Entamoeba histolytica}

Probab=91.05  E-value=0.21  Score=40.88  Aligned_cols=61  Identities=18%  Similarity=0.264  Sum_probs=48.7

Q ss_pred             cchHHHHHHhhhccChhHHHHHHHHhhhhhcCCCCccchhhhhhhhccCCcchhhhcCcccc
Q psy16509         20 YRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCVRIKPWAN   81 (123)
Q Consensus        20 ~RF~~IV~~L~~~~nv~ykvacMqFINalI~s~edL~fRihLRnEF~~LGL~d~L~~~~~~~   81 (123)
                      ..|-+...-+.++.+-.++-|.+.+||-+|..| +|.-|+..||-|+..||..-|...+|..
T Consensus       220 kkflsffslfsksksekfkhaslvlinnlidqp-elehrmdvrnsfieiglvnelenmknte  280 (353)
T 4dvg_B          220 KKFLSFFSLFSKSKSEKFKHASLVLINNLIDQP-ELEHRMDVRNSFIEIGLVNELENMKNTE  280 (353)
T ss_dssp             STTHHHHHHHHHCCCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTTTHHHHHHHHHTSG
T ss_pred             HHHHHHHHHHhhhhhhhcccceeehhhccccch-hhHhhhhhhhhheeeehhhHhhhccCcc
Confidence            346666666677788899999999999999776 5999999999999999976666555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	123
d2bnxa1	343	a.118.1.23 (A:133-475) Diaphanous protein homolog	3e-10

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 343

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.8 bits (129), Expect = 3e-10
 Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 13/104 (12%)

Query: 16  KNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCVR 75
            +E  R + ++D L++  ++  +   L  IN LI    +L+ R+ IR+E           
Sbjct: 148 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL---------- 197

Query: 76  IKPWANHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEVFSQC 119
                  +   L    E E E+ + +    +E+ +E+       
Sbjct: 198 ---MRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGR 238

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	123
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	99.75

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.4e-19  Score=145.96  Aligned_cols=90  Identities=18%  Similarity=0.270  Sum_probs=76.1

Q ss_pred             ccccc-----hhhhHhhhccccchHHHHHHhhhccChhHHHHHHHHhhhhhcCCCCccchhhhhhhhccCCcchhhhcCc
Q psy16509          4 QIGQS-----RRPQKTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCVRIKP   78 (123)
Q Consensus         4 ~~g~~-----~~~fK~~~~Er~RF~~IV~~L~~~~nv~ykvacMqFINalI~s~edL~fRihLRnEF~~LGL~d~L~~~~   78 (123)
                      ..||.     +.+|+. +++++||+++|++|+++.+++|++|||+|||+||++++++++|+|||+||+++||.++|.+.+
T Consensus       132 ~~g~~~vL~Al~~~~~-~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l~  210 (343)
T d2bnxa1         132 EDMNERVLEAMTERAE-MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELR  210 (343)
T ss_dssp             TTHHHHHHHHHHHHHH-HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred             CchHHHHHHHHHHHHH-hcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHHH
Confidence            35787     577775 568999999999999999999999999999999999999999999999999999999888766


Q ss_pred             cccc----cceeecccchhh
Q psy16509         79 WANH----MFFYLFSTEEEE   94 (123)
Q Consensus        79 ~~~~----~~f~lfs~eeE~   94 (123)
                      +...    .++..|....++
T Consensus       211 ~~~~~~L~~Qi~~f~~~~~~  230 (343)
T d2bnxa1         211 EIENEDMKVQLCVFDEQGDE  230 (343)
T ss_dssp             TCCCHHHHHHHHHHHHHHHH
T ss_pred             ccCChHHHHHHHHHHHHHHh
Confidence            5433    577777544333