Psyllid ID: psy16521

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
Protein Sequence
MIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTGVGGVGGGVGGL
Secondary Structure (PSIPRED)
cEEEEEEcccccccEEEEcccccHHHHHcccccccEEEEcccccccHHHHHHHHHHHHHcccccccccEEEEEcccccccHHHHHHHHHHccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccEEEEEcHHHHHHHHcccccccEEEEccccccccHHHHHHHHHccHcccccccccEEEEEccccccccHHHHHHHHHccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccEEEHHcccccccccccccccccccHHHHccccccccccccc
Coil and Loop (DISEMBL)
MIGIIrasgeaippvfvfprvfmkdefllgapegslgfanksgwssTEIFFETIKHIQNQIKaskenpalilmdnhethQSMEAIEYCRASgitlltfpphktdelqpldvavfsPFKNRLKAGFkkwtsdnpgsisTEIHHnnnnnnnnnnnnnnnnnnnnntntdtattpippptttttttttttttgvggvgggvggl
Flexible Loop (DISEMBL)
migiirasgeaippvfVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTdtattpippptttttttttttttgvggvgggvggl
Low Complexity Region (SEG)
MIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSISTEIHHnnnnnnnnnnnnnnnnnnnnntntdtattpippptttttttttttttgvggvgggvggL
Disordered region (IsUnstruct)
***IIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKW*************************************************************************
Disordered Region (DISOPRED)
MIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPT************************
Disordered Region (DISEMBL)
MIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTGVGGVGGGVGGL
Disordered Region (DISPRO)
MIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPP**************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTGVGGVGGGVGGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
357618507	764	hypothetical protein KGM_18910 [Danaus p	0.676	0.178	0.536	7e-40
427791397	487	Putative tick transposon, partial [Rhipi	0.666	0.275	0.507	1e-35
449692570	318	PREDICTED: uncharacterized protein LOC10	0.676	0.427	0.492	2e-34
449670659	1644	PREDICTED: uncharacterized protein LOC10	0.676	0.082	0.477	4e-34
449689439	278	PREDICTED: uncharacterized protein LOC10	0.676	0.489	0.492	5e-34
449688819	419	PREDICTED: uncharacterized protein LOC10	0.676	0.324	0.477	6e-33
449676617	1115	PREDICTED: uncharacterized protein LOC10	0.676	0.121	0.477	9e-33
328701038	503	PREDICTED: jerky protein homolog-like [A	0.666	0.266	0.477	9e-33
443733699	298	hypothetical protein CAPTEDRAFT_141083 [	0.676	0.456	0.477	2e-32
443712648	341	hypothetical protein CAPTEDRAFT_125872 [	0.676	0.398	0.470	3e-32

>gi|357618507|gb|EHJ71459.1| hypothetical protein KGM_18910 [Danaus plexippus]

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 73/136 (53%), Positives = 96/136 (70%)

Query: 3   GIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIK 62
           G+I A+G ++PPV+VFPRV  KD FL GAP+GSLG  N+SGW ++E+F   +KHIQ    
Sbjct: 284 GVITATGSSLPPVYVFPRVHYKDHFLNGAPDGSLGLVNRSGWMTSELFIRVLKHIQRLTS 343

Query: 63  ASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLK 122
           ++K NP LI+ DNHE+H S+EA+ YCR +G+  L+ PPH + +LQPLDV VF PFK +LK
Sbjct: 344 SNKNNPILIICDNHESHISIEAVNYCRDNGMVYLSLPPHTSHKLQPLDVGVFGPFKGKLK 403

Query: 123 AGFKKWTSDNPGSIST 138
             F  W   N G I T
Sbjct: 404 IAFNDWHIQNVGKILT 419

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427791397|gb|JAA61150.1| Putative tick transposon, partial [Rhipicephalus pulchellus]

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/134 (50%), Positives = 90/134 (67%)

Query: 1   MIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQ 60
           ++  + A G A+PPV +FPRV  KD FL GAP GSLG A++SGW S+E+F   ++HI   
Sbjct: 220 VLCTVNAIGNALPPVLIFPRVRFKDFFLKGAPAGSLGLADRSGWMSSELFLLALEHIVRH 279

Query: 61  IKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNR 120
            K S E P L++ DNHE+H S+  I   + SG+ LLTFPPH +  LQPLDV+V+ PFK+R
Sbjct: 280 TKCSTEEPILLIRDNHESHVSINTINKAKESGVILLTFPPHCSHRLQPLDVSVYGPFKSR 339

Query: 121 LKAGFKKWTSDNPG 134
             A    W +DNPG
Sbjct: 340 YNAACNDWLTDNPG 353

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449692570|ref|XP_004213088.1| PREDICTED: uncharacterized protein LOC101237143, partial [Hydra magnipapillata]

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/136 (49%), Positives = 89/136 (65%)

Query: 1   MIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQ 60
           M+  + A G  +PPVF+FPRV  KD  + GAP GSLG  NKSGW ++E F   +KH  + 
Sbjct: 79  MLAFVNAMGNTVPPVFIFPRVNYKDFMICGAPTGSLGLCNKSGWMTSENFLVAMKHFVSH 138

Query: 61  IKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNR 120
            K S E+P L+LMDNHE+H S E I + + + + LLTFPPH +  LQPLDV+VF PFK+ 
Sbjct: 139 AKPSVEHPVLLLMDNHESHISFETITFAKENSLILLTFPPHCSHRLQPLDVSVFGPFKSY 198

Query: 121 LKAGFKKWTSDNPGSI 136
            +    +W + NPG I
Sbjct: 199 FRLAQNEWLASNPGRI 214

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|449670659|ref|XP_004207313.1| PREDICTED: uncharacterized protein LOC101240164 [Hydra magnipapillata]

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 89/136 (65%)

Query: 1    MIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQ 60
            M+  + A G  +PP+F+FPR+  KD  + GAP GSLG  NKSGW ++E F   +KH  + 
Sbjct: 1284 MLAFVNAMGNTVPPLFIFPRINYKDFMICGAPTGSLGLCNKSGWMTSENFLVAMKHFVSH 1343

Query: 61   IKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNR 120
             K S E+P L+LMDNHE+H S E I + + + + LLTFPPH +  LQPLDV+VF PFK+ 
Sbjct: 1344 AKPSVEHPVLLLMDNHESHISFETITFAKENSLILLTFPPHCSHRLQPLDVSVFGPFKSY 1403

Query: 121  LKAGFKKWTSDNPGSI 136
             +    +W + NPG I
Sbjct: 1404 FRLAQNEWLASNPGRI 1419

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|449689439|ref|XP_004212031.1| PREDICTED: uncharacterized protein LOC101234515 [Hydra magnipapillata]

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/136 (49%), Positives = 89/136 (65%)

Query: 1   MIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQ 60
           M+  + A G  +PPVF+FPRV  KD  + GAP GSLG  NKSGW ++E F   +KH  + 
Sbjct: 1   MLAFVNAMGNTVPPVFIFPRVNYKDFMICGAPTGSLGLCNKSGWMASENFLVAMKHFVSH 60

Query: 61  IKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNR 120
            K S E+P L+LMDNHE+H S E I + + + + LLTFPPH +  LQPLDV+VF PFK+ 
Sbjct: 61  AKPSVEHPVLLLMDNHESHISFETITFAKENSLILLTFPPHCSHRLQPLDVSVFGPFKSC 120

Query: 121 LKAGFKKWTSDNPGSI 136
            +    +W + NPG I
Sbjct: 121 FRLAQNEWLASNPGRI 136

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|449688819|ref|XP_004211858.1| PREDICTED: uncharacterized protein LOC101241720, partial [Hydra magnipapillata]

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 88/136 (64%)

Query: 1   MIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQ 60
           M+  + A G  +PPVF+FPRV  KD  + GAP GSLG  NKSGW ++E F   +KH  + 
Sbjct: 210 MLAFVNAMGNTVPPVFIFPRVNYKDFMICGAPTGSLGLCNKSGWMTSENFLVAMKHFVSH 269

Query: 61  IKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNR 120
            K S E+P L+LM NH++H S E I + + + + LLTFPPH +  LQPLDV+VF PFK+ 
Sbjct: 270 AKPSVEHPVLLLMVNHKSHISFETITFAKENSLILLTFPPHCSHRLQPLDVSVFGPFKSY 329

Query: 121 LKAGFKKWTSDNPGSI 136
            +    +W + NPG I
Sbjct: 330 FRLAQNEWLASNPGRI 345

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|449676617|ref|XP_002162876.2| PREDICTED: uncharacterized protein LOC100213942 [Hydra magnipapillata]

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 87/136 (63%)

Query: 1   MIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQ 60
           M+  + A G  +PPVF+F RV  KD  + GAP GSLG  NKSGW ++E F   +KH  + 
Sbjct: 755 MLAFVNAMGNTVPPVFIFLRVNYKDFMICGAPTGSLGLCNKSGWMTSENFLVAMKHFVSH 814

Query: 61  IKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNR 120
            K S E+  L+LMDNHE+H S E I + + + + LLTFPPH +  LQPLDV+VF PFK+ 
Sbjct: 815 AKPSVEHQVLLLMDNHESHISFETITFAKENSLILLTFPPHCSHRLQPLDVSVFGPFKSY 874

Query: 121 LKAGFKKWTSDNPGSI 136
            +    +W + NPG I
Sbjct: 875 FRLAQNEWLASNPGRI 890

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|328701038|ref|XP_003241471.1| PREDICTED: jerky protein homolog-like [Acyrthosiphon pisum]

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 64/134 (47%), Positives = 85/134 (63%)

Query: 1   MIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQ 60
           M   + A G AIPP+F+FPRV  KD F+ G P G +G +NKSGW   E F + I H  N 
Sbjct: 132 MCLAVSAVGNAIPPMFIFPRVNFKDHFIRGGPPGCIGTSNKSGWMQGEEFLKFITHFTNH 191

Query: 61  IKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNR 120
           ++ + E   LIL+DNHE+H  +  I++CRA+GI LL+FPPH + +LQPLD +VF PFK  
Sbjct: 192 VRPTIEKKVLILLDNHESHLYLPVIDFCRANGIVLLSFPPHCSHKLQPLDRSVFGPFKKC 251

Query: 121 LKAGFKKWTSDNPG 134
           +      W   NPG
Sbjct: 252 INQEMDSWLKSNPG 265

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443733699|gb|ELU17960.1| hypothetical protein CAPTEDRAFT_141083 [Capitella teleta]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 88/136 (64%)

Query: 1   MIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQ 60
           M+G I A G +IPP+ VFPRV  K+  L G+P G++G AN SGW + ++F + + H    
Sbjct: 159 MVGCINAQGNSIPPLLVFPRVNFKEHMLHGSPPGTVGVANPSGWITKDLFLQWMDHFIQH 218

Query: 61  IKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNR 120
             +SKENP L+L+DNHE+H S+ AI+  R +GITLL+FPPH + +LQPLD  V+ P K  
Sbjct: 219 ASSSKENPTLLLLDNHESHCSIAAIDKARDAGITLLSFPPHCSHKLQPLDRTVYGPLKKF 278

Query: 121 LKAGFKKWTSDNPGSI 136
             A    W   NPG I
Sbjct: 279 YNAACDSWMLRNPGKI 294

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443712648|gb|ELU05857.1| hypothetical protein CAPTEDRAFT_125872 [Capitella teleta]

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/136 (47%), Positives = 88/136 (64%)

Query: 1   MIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQ 60
           M+G I A G +IPP+ VFPRV  K+  L G+P G++G AN SGW + ++F + + H    
Sbjct: 202 MVGCINAQGNSIPPLLVFPRVNFKEHMLHGSPPGTVGVANPSGWITKDLFLQWMDHFIQH 261

Query: 61  IKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNR 120
             +SKENP L+L+DNHE+H S+ AI+  R +GITLL+FPPH + +LQPLD  ++ P K  
Sbjct: 262 ASSSKENPTLLLLDNHESHCSIAAIDKARDAGITLLSFPPHCSHKLQPLDRTIYGPLKKF 321

Query: 121 LKAGFKKWTSDNPGSI 136
             A    W   NPG I
Sbjct: 322 YNAACDSWMLRNPGKI 337

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
ASPGD|ASPL0000031765	627	AN5233 [Emericella nidulans (t	0.572	0.183	0.311	2.5e-09
CGD|CAL0005175	516	orf19.2866 [Candida albicans (	0.631	0.246	0.271	2.2e-08
CGD|CAL0001980	516	orf19.3820 [Candida albicans (	0.631	0.246	0.271	2.2e-08
UNIPROTKB|Q5A670	516	CTN2 "Cirt2 putative transposa	0.631	0.246	0.271	2.2e-08
ASPGD|ASPL0000014032	461	AN11044 [Emericella nidulans (	0.552	0.240	0.294	5e-08
ASPGD|ASPL0000052324	462	AN0975 [Emericella nidulans (t	0.552	0.240	0.294	5e-08
ASPGD|ASPL0000063833	526	AN7516 [Emericella nidulans (t	0.552	0.211	0.294	6.2e-08
ASPGD|ASPL0000080187	526	AN9505 [Emericella nidulans (t	0.552	0.211	0.294	6.2e-08
ASPGD|ASPL0000078344	542	AN4877 [Emericella nidulans (t	0.552	0.204	0.294	6.4e-08
ASPGD|ASPL0000071149	554	AN4391 [Emericella nidulans (t	0.552	0.200	0.294	6.7e-08

ASPGD|ASPL0000031765 AN5233 [Emericella nidulans (taxid:162425)]

 Score = 147 (56.8 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 38/122 (31%), Positives = 63/122 (51%)

Query:     2 IGIIRASGEAIPPVFVFPRVFMK--DEFLLGA-PEGSLGF--ANKSGWSSTEIFFETIKH 56
             I  I A G  +PP  V+     K  D +L    PE    F  ++ SGW++ ++    ++ 
Sbjct:   199 IPCICADGSKLPPGLVYQSASSKIQDTWLQDFNPEYHNCFFTSSPSGWTNDDVCLAWLRD 258

Query:    57 IQNQIKASKENPA--LILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVF 114
             + ++    K      L+L+D + +  +M+ ++YC  + I L T+PPH T  LQPLDV + 
Sbjct:   259 VFDRETKPKARGRWRLLLLDGYGSFVTMKFLDYCEENKILLATYPPHSTHTLQPLDVGII 318

Query:   115 SP 116
             SP
Sbjct:   319 SP 320

GO:0008150 "biological_process" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

CGD|CAL0005175 orf19.2866 [Candida albicans (taxid:5476)]

 Score = 137 (53.3 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 35/129 (27%), Positives = 61/129 (47%)

Query:     1 MIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQ-N 59
             +I  I  SGE + P  +F    ++  +            +K G++S  + +  ++ +   
Sbjct:   191 VIEAINMSGEKLIPGIIFKGQTLRTGWFNDDASDYYYSVSKCGYTSYWLSWRWLEEVFIP 250

Query:    60 QIKA-SKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFK 118
             Q+K  + +   L++MD H +H++ +  E C  + I  L  PPH T  LQPLD+ +F P K
Sbjct:   251 QVKEKTNQGKVLLIMDGHGSHKTKKFRETCEDNNIIPLYLPPHSTHLLQPLDLGIFGPIK 310

Query:   119 NRLKAGFKK 127
                K    K
Sbjct:   311 YGYKVKLSK 319

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0001980 orf19.3820 [Candida albicans (taxid:5476)]

 Score = 137 (53.3 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 35/129 (27%), Positives = 61/129 (47%)

Query:     1 MIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQ-N 59
             +I  I  SGE + P  +F    ++  +            +K G++S  + +  ++ +   
Sbjct:   191 VIEAINMSGEKLIPGIIFKGQTLRTGWFNDDASDYYYSVSKCGYTSYWLSWRWLEEVFIP 250

Query:    60 QIKA-SKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFK 118
             Q+K  + +   L++MD H +H++ +  E C  + I  L  PPH T  LQPLD+ +F P K
Sbjct:   251 QVKEKTNQGKVLLIMDGHGSHKTKKFRETCEDNNIIPLYLPPHSTHLLQPLDLGIFGPIK 310

Query:   119 NRLKAGFKK 127
                K    K
Sbjct:   311 YGYKVKLSK 319

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5A670 CTN2 "Cirt2 putative transposase" [Candida albicans SC5314 (taxid:237561)]

 Score = 137 (53.3 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 35/129 (27%), Positives = 61/129 (47%)

Query:     1 MIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQ-N 59
             +I  I  SGE + P  +F    ++  +            +K G++S  + +  ++ +   
Sbjct:   191 VIEAINMSGEKLIPGIIFKGQTLRTGWFNDDASDYYYSVSKCGYTSYWLSWRWLEEVFIP 250

Query:    60 QIKA-SKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFK 118
             Q+K  + +   L++MD H +H++ +  E C  + I  L  PPH T  LQPLD+ +F P K
Sbjct:   251 QVKEKTNQGKVLLIMDGHGSHKTKKFRETCEDNNIIPLYLPPHSTHLLQPLDLGIFGPIK 310

Query:   119 NRLKAGFKK 127
                K    K
Sbjct:   311 YGYKVKLSK 319

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000014032 AN11044 [Emericella nidulans (taxid:162425)]

 Score = 133 (51.9 bits), Expect = 5.0e-08, P = 5.0e-08
 Identities = 35/119 (29%), Positives = 56/119 (47%)

Query:     5 IRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKAS 64
             I ASG A+PP  +F        +  G P       + +GW++ EI   +++ +Q Q   S
Sbjct:   123 ISASGWALPPTLIFKGKQYNQAWFTGLPPDWRFEISTNGWTTNEI---SLRWLQKQFIPS 179

Query:    65 KENPA-----LILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFK 118
              E+       L+++D H +H + E  + C    I  L  P H +  LQPLD+  F+  K
Sbjct:   180 TEHRTRGRYQLLVLDGHGSHLTPEFDQICTDHNIIPLCMPAHSSHLLQPLDIGCFAVLK 238

GO:0008150 "biological_process" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000052324 AN0975 [Emericella nidulans (taxid:162425)]

 Score = 133 (51.9 bits), Expect = 5.0e-08, P = 5.0e-08
 Identities = 35/119 (29%), Positives = 56/119 (47%)

Query:     5 IRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKAS 64
             I ASG A+PP  +F        +  G P       + +GW++ EI   +++ +Q Q   S
Sbjct:   169 ISASGWALPPTLIFKGKQYNQAWFTGLPPDWRFEISTNGWTTNEI---SLRWLQKQFIPS 225

Query:    65 KENPA-----LILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFK 118
              E+       L+++D H +H + E  + C    I  L  P H +  LQPLD+  F+  K
Sbjct:   226 TEHRTRGRYQLLVLDGHGSHLTPEFDQICTDHNIIPLCMPAHSSHLLQPLDIGCFAVLK 284

GO:0008150 "biological_process" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000063833 AN7516 [Emericella nidulans (taxid:162425)]

 Score = 133 (51.9 bits), Expect = 6.2e-08, P = 6.2e-08
 Identities = 35/119 (29%), Positives = 56/119 (47%)

Query:     5 IRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKAS 64
             I ASG A+PP  +F        +  G P       + +GW++ EI   +++ +Q Q   S
Sbjct:   216 ISASGWALPPTLIFKGKQYNQAWFTGLPPDWRFEISTNGWTTNEI---SLRWLQKQFIPS 272

Query:    65 KENPA-----LILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFK 118
              E+       L+++D H +H + E  + C    I  L  P H +  LQPLD+  F+  K
Sbjct:   273 TEHRTRGRYQLLVLDGHGSHLTPEFDQICTDHNIIPLCMPAHSSHLLQPLDIGCFAVLK 331

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

ASPGD|ASPL0000080187 AN9505 [Emericella nidulans (taxid:162425)]

 Score = 133 (51.9 bits), Expect = 6.2e-08, P = 6.2e-08
 Identities = 35/119 (29%), Positives = 56/119 (47%)

Query:     5 IRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKAS 64
             I ASG A+PP  +F        +  G P       + +GW++ EI   +++ +Q Q   S
Sbjct:   216 ISASGWALPPTLIFKGKQYNQAWFTGLPPDWRFEISTNGWTTNEI---SLRWLQKQFIPS 272

Query:    65 KENPA-----LILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFK 118
              E+       L+++D H +H + E  + C    I  L  P H +  LQPLD+  F+  K
Sbjct:   273 TEHRTRGRYQLLVLDGHGSHLTPEFDQICTDHNIIPLCMPAHSSHLLQPLDIGCFAVLK 331

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

ASPGD|ASPL0000078344 AN4877 [Emericella nidulans (taxid:162425)]

 Score = 133 (51.9 bits), Expect = 6.4e-08, P = 6.4e-08
 Identities = 35/119 (29%), Positives = 56/119 (47%)

Query:     5 IRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKAS 64
             I ASG A+PP  +F        +  G P       + +GW++ EI   +++ +Q Q   S
Sbjct:   201 ISASGWALPPTLIFKGKQYNQAWFTGLPPDWRFEISTNGWTTNEI---SLRWLQKQFIPS 257

Query:    65 KENPA-----LILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFK 118
              E+       L+++D H +H + E  + C    I  L  P H +  LQPLD+  F+  K
Sbjct:   258 TEHRTRGRYQLLVLDGHGSHLTPEFDQICTDHNIIPLCMPAHSSHLLQPLDIGCFAVLK 316

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

ASPGD|ASPL0000071149 AN4391 [Emericella nidulans (taxid:162425)]

 Score = 133 (51.9 bits), Expect = 6.7e-08, P = 6.7e-08
 Identities = 35/119 (29%), Positives = 56/119 (47%)

Query:     5 IRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKAS 64
             I ASG A+PP  +F        +  G P       + +GW++ EI   +++ +Q Q   S
Sbjct:   216 ISASGWALPPTLIFKGKQYNQAWFTGLPPDWRFEISTNGWTTNEI---SLRWLQKQFIPS 272

Query:    65 KENPA-----LILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFK 118
              E+       L+++D H +H + E  + C    I  L  P H +  LQPLD+  F+  K
Sbjct:   273 TEHRTRGRYQLLVLDGHGSHLTPEFDQICTDHNIIPLCMPAHSSHLLQPLDIGCFAVLK 331

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	201
pfam03184	215	pfam03184, DDE_1, DDE superfamily endonuclease	6e-19
PTZ00470	522	PTZ00470, PTZ00470, glycoside hydrolase family 47	8e-05
pfam13358	146	pfam13358, DDE_3, DDE superfamily endonuclease	8e-05
PTZ00470	522	PTZ00470, PTZ00470, glycoside hydrolase family 47	2e-04
PTZ00470	522	PTZ00470, PTZ00470, glycoside hydrolase family 47	4e-04
COG3889	872	COG3889, COG3889, Predicted solute binding protein	6e-04
PTZ00470	522	PTZ00470, PTZ00470, glycoside hydrolase family 47	0.002

>gnl|CDD|217410 pfam03184, DDE_1, DDE superfamily endonuclease

 Score = 80.9 bits (200), Expect = 6e-19
 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 7/142 (4%)

Query: 1   MIGIIRASGEAIPPVFVF----PRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFE-TIK 55
           +I    A GE +PP+ +     PR F  ++     P      ANK+ W + EIF E   K
Sbjct: 45  VICANAAGGEKLPPLVIGKGKNPRAFKFEKK--PKPLPWEYKANKNAWMTDEIFEEWLEK 102

Query: 56  HIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFS 115
               +++ +     L+++D H +H + E +  C+ + I LL  P H T  LQPLD  VFS
Sbjct: 103 VFDPRMQPAPGRKVLLILDGHGSHPTDEFMRSCKLNNIILLFLPAHSTSLLQPLDQGVFS 162

Query: 116 PFKNRLKAGFKKWTSDNPGSIS 137
             K   +    K       ++S
Sbjct: 163 SLKAAYRRQLLKKALAGIETLS 184

This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. Interestingly this family also includes the CENP-B protein. This domain in that protein appears to have lost the metal binding residues and is unlikely to have endonuclease activity. Centromere Protein B (CENP-B) is a DNA-binding protein localised to the centromere. Length = 215

>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein; Provisional

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 17/43 (39%), Positives = 20/43 (46%)

Query: 135 SISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPT 177
           S+      N NNNNNNNN  N+NN NNN  N  +         
Sbjct: 9   SVHNNADDNYNNNNNNNNQINSNNPNNNGNNQASKLPRGKKKQ 51

Length = 522

>gnl|CDD|222070 pfam13358, DDE_3, DDE superfamily endonuclease

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 10/100 (10%)

Query: 28  LLGA--PEGSLGFANKSGWSSTEIFFETIKHIQNQIK-ASKENPALILMDNHETHQSMEA 84
           L+GA  PEG L    + G  + E F      ++  +K   +    +I++DN   H+S E 
Sbjct: 41  LIGALDPEGGLAPFVEEGTVNAEDF---AAFLEKLLKPYLQPQKIVIVLDNASYHKSKEV 97

Query: 85  IEYCRAS--GITLLTFPPHKTDELQPLDVAVFSPFKNRLK 122
            E   A   GI LL  PP+ + +L P++  V+S  K R++
Sbjct: 98  QELVEAEAAGIELLYLPPY-SPDLNPIE-LVWSVLKRRVR 135

This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. Length = 146

>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein; Provisional

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 138 TEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPP 175
             +H+N ++N NNNNNNNN  N+NN  N         P
Sbjct: 8   LSVHNNADDNYNNNNNNNNQINSNNPNNNGNNQASKLP 45

Length = 522

>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein; Provisional

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 131 DNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPP 176
           +    +S   + ++N NNNNNNNN  N+NN NN   + A+      
Sbjct: 3   NLREHLSVHNNADDNYNNNNNNNNQINSNNPNNNGNNQASKLPRGK 48

Length = 522

>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only]

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 164 TNTDTATTPIPPPTTTTTTTTTTTTTGVGGVGGGVGG 200
           T +  + T    PT T+T+TTTTT+      GGG+ G
Sbjct: 816 TTSSPSPTQTTSPTQTSTSTTTTTSPSQTTTGGGICG 852

Length = 872

>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein; Provisional

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 143 NNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTT 178
            +NN ++N NNNNNNNN  N+ N +           
Sbjct: 10  VHNNADDNYNNNNNNNNQINSNNPNNNGNNQASKLP 45

Length = 522

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	201
PF03184	217	DDE_1: DDE superfamily endonuclease; InterPro: IPR	99.96
PF13358	146	DDE_3: DDE superfamily endonuclease	98.72
KOG3105|consensus	488		98.15
KOG3105|consensus	488		97.29
COG3335	132	Transposase and inactivated derivatives [DNA repli	93.45
PF07592	311	DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE do	90.58
PF00665	120	rve: Integrase core domain; InterPro: IPR001584 In	89.76
PHA02517	277	putative transposase OrfB; Reviewed	85.84

>PF03184 DDE_1: DDE superfamily endonuclease; InterPro: IPR004875 These proteins are probably endonucleases of the DDE superfamily

Probab=99.96  E-value=3.6e-30  Score=206.80  Aligned_cols=135  Identities=33%  Similarity=0.594  Sum_probs=122.8

Q ss_pred             CEEEEeecCcccCcEEEeccccCccccc--cCCCCCceEEecCCCCCchHHHHHHH-HHHHHhhhhcCCCCeEEEeecCc
Q psy16521          1 MIGIIRASGEAIPPVFVFPRVFMKDEFL--LGAPEGSLGFANKSGWSSTEIFFETI-KHIQNQIKASKENPALILMDNHE   77 (201)
Q Consensus         1 Vi~~~nA~G~~lpP~iI~~~~~~~~~~~--~~~~~~~~~~~s~~Gw~t~~i~~~wl-~~f~~~~~~~~~~~~lLilD~~~   77 (201)
                      |++|++|+|..+||++|++++.....+.  ...+.++.|..+++||||.++|++|| +.|.+.++ ..++++|||+|+++
T Consensus        48 ~l~~~~a~g~~lpP~vI~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~wl~~~f~~~~~-~~~~~~lLllD~~~  126 (217)
T PF03184_consen   48 VLCCNSAGGEKLPPLVIFKGKRPRCFWNDVDDKPLGVYYASSENGWMTTELFLEWLKKVFDPRVK-SPGRPVLLLLDSHS  126 (217)
T ss_pred             ceeeecccccccccccccccccccccccccccccCCcccccccccccccccchhhhhhhhccccc-cccccccccccccc
Confidence            4566778889999999999998777776  45678999999999999999999999 57999887 56799999999999


Q ss_pred             ccchhhHHhhhhccceEEeecCCCCCCCCCcccchhhhhhHHHHHHhHHHHhhcCCCCc
Q psy16521         78 THQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSI  136 (201)
Q Consensus        78 sh~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f~~lK~~~~~~~~~~~~~~~~~~  136 (201)
                      +|.+.++.++|++++|.++++||+++|.+||||+++|++||..|++.+.+|+.+.....
T Consensus       127 ~h~~~~~~~~~~~~~i~l~~lP~~~t~~lQPld~~v~~~~K~~~r~~~~~~~~~~~~~~  185 (217)
T PF03184_consen  127 SHISPEFKQLCKSNNIILVFLPPNTTHLLQPLDVGVFGPFKAHYRKKLLQWIIENGNNP  185 (217)
T ss_pred             ccccccchhhhhccccccceecccccccccccchhhhhhhhHHHHHHHHHHHHhccccc
Confidence            99999999999999999999999999999999999999999999999999998876554

Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. Interestingly this family also includes the CENP-B protein. This domain in that protein appears to have lost the metal binding residues and is unlikely to have endonuclease activity. Centromere Protein B (CENP-B) is a DNA-binding protein localised to the centromere []. ; GO: 0003676 nucleic acid binding

>PF13358 DDE_3: DDE superfamily endonuclease

Probab=98.72  E-value=5.8e-09  Score=77.75  Aligned_cols=81  Identities=27%  Similarity=0.482  Sum_probs=69.5

Q ss_pred             ecCCCCCchHHHHHHHHHHHHhhhhcCCCCeEEEeecCcccchhhHHhhhhc--cceEEeecCCCCCCCCCcccchhhhh
Q psy16521         39 ANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRA--SGITLLTFPPHKTDELQPLDVAVFSP  116 (201)
Q Consensus        39 ~s~~Gw~t~~i~~~wl~~f~~~~~~~~~~~~lLilD~~~sh~s~~~~~~~~~--~~I~l~~lP~~~t~~lQPLD~~~f~~  116 (201)
                      ....|.++.+.+.+||+.+.......  .+++|++|+.+.|.+..+.+.+++  .++.++++||++.. |+|+| .+|+.
T Consensus        54 ~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~li~DNa~~H~~~~~~~~l~~~~~~~~~~~~P~~sPd-LNpiE-~~w~~  129 (146)
T PF13358_consen   54 FVVEGTMNSEDFIEFLEQLLRPYPRK--GRIVLIMDNASIHKSKKVQEWLEEHERGIELLFLPPYSPD-LNPIE-NVWGY  129 (146)
T ss_pred             eeeeeeeccccccccccccccccccc--eEEEEecccccccccccccceeeccccccccccccCcCCc-cCHHH-HHHHH
Confidence            55677899999999999765433311  189999999999999999999998  99999999999998 89999 69999


Q ss_pred             hHHHHHH
Q psy16521        117 FKNRLKA  123 (201)
Q Consensus       117 lK~~~~~  123 (201)
                      +|..+++
T Consensus       130 lk~~~~~  136 (146)
T PF13358_consen  130 LKRRIRR  136 (146)
T ss_pred             HHHHHHh
Confidence            9998876

>KOG3105|consensus

Probab=98.15  E-value=5.1e-07  Score=81.41  Aligned_cols=129  Identities=20%  Similarity=0.178  Sum_probs=91.8

Q ss_pred             EEEEeecCcccCcEEEeccccCccccccCCC--CCceEEec-CCCCCchHHHHHHHHHHHHhhhhcCCCCeEEEeecCcc
Q psy16521          2 IGIIRASGEAIPPVFVFPRVFMKDEFLLGAP--EGSLGFAN-KSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHET   78 (201)
Q Consensus         2 i~~~nA~G~~lpP~iI~~~~~~~~~~~~~~~--~~~~~~~s-~~Gw~t~~i~~~wl~~f~~~~~~~~~~~~lLilD~~~s   78 (201)
                      +.++.++|..+||+++++++..+..-  +..  ....|+.. ...-|..+.+.+|.+...-   ...-...++.+|++.+
T Consensus       280 ~~~i~~~g~~~p~~~~l~~~~~p~~~--~i~~~~k~~~r~~~~~~l~~~~~~~d~~~~~~~---~~~~~~~~~~~d~~~~  354 (488)
T KOG3105|consen  280 LPMIRADGSKGPAYIVLPEKKFPPDQ--GIINRFKLEYRAGWKEHLMEKELMRDWLESCVG---LPAVPKKLLAWDSWPE  354 (488)
T ss_pred             HHHHhhccCcCcceeeccccCCCCcC--CcchHHHHHHHhhhhhhhhhhhhhhhhhhhccc---ccccccceeeecccHH
Confidence            56788999999999999888332211  111  01112111 4444555555555553211   1123445666699999


Q ss_pred             cchhhHHhhhhccceEEeecCCCCCCCCCcccchhhhhhHHHHHHhHHHHhhcCCCC
Q psy16521         79 HQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGS  135 (201)
Q Consensus        79 h~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f~~lK~~~~~~~~~~~~~~~~~  135 (201)
                      |....+...+...++....+|++++..+||+|+.++.++|...++....++....+.
T Consensus       355 ~~~~~~~~s~~~~~~~~~~ip~~~ts~iq~~d~~~~~~~~~~~~~~~~~~~~~~~~~  411 (488)
T KOG3105|consen  355 HKEDATKQSLKLLDVDIRVIPGGTTSFIQPLDVYWNSPWKNLIKKFTADELRAQIDD  411 (488)
T ss_pred             HHHHHHHHhhhhccccccccCCccceeecccceeecccchhhhhhhHHHHHHhcccc
Confidence            999999888887799999999999999999999999999999999988888877665

>KOG3105|consensus

Probab=97.29  E-value=0.00021  Score=64.50  Aligned_cols=118  Identities=14%  Similarity=0.082  Sum_probs=82.9

Q ss_pred             CEEEEeecCcc-cCcEEEeccccCcccccc---CCCCCceEEecCCCCCchHHHHHHHHHHHHhhhhcCCCCe--EEEee
Q psy16521          1 MIGIIRASGEA-IPPVFVFPRVFMKDEFLL---GAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPA--LILMD   74 (201)
Q Consensus         1 Vi~~~nA~G~~-lpP~iI~~~~~~~~~~~~---~~~~~~~~~~s~~Gw~t~~i~~~wl~~f~~~~~~~~~~~~--lLilD   74 (201)
                      ++.|.+++|.. +|+.++.+.+...+....   ..+..+.+......|++...+..|...+.....   .+.+  ++.+|
T Consensus       195 L~~~~~a~g~~kl~~~~~~k~~~p~~~~~~~~~~~~~~~~~~~~~~a~~t~~~~~~~~~~~~~~~~---~~~v~~V~~~~  271 (488)
T KOG3105|consen  195 LVLRRNADGVTKLPLDLKGKKVLPASFFEANNRPELSNYHPSMIFNADETGFQKEFWLRRTLAEMG---EKEVELVQSLD  271 (488)
T ss_pred             eeeeeccCccccCcHHHHHHhhchHHHHhhccccccccCChhhccccccchhhhhhhhhccccccc---ceEEEEEEecC
Confidence            57899999998 777777555544333222   234456666777888888888888775433322   3344  88999


Q ss_pred             cCcccchhhHHhhhhccceE-EeecCCCCCCCCCcccchhhhhhHHHHHHhH
Q psy16521         75 NHETHQSMEAIEYCRASGIT-LLTFPPHKTDELQPLDVAVFSPFKNRLKAGF  125 (201)
Q Consensus        75 ~~~sh~s~~~~~~~~~~~I~-l~~lP~~~t~~lQPLD~~~f~~lK~~~~~~~  125 (201)
                      +...|.+...........+. .+++|..    .||++.++...+|..|+..+
T Consensus       272 s~~~h~~~~~~i~~~g~~~p~~~~l~~~----~~p~~~~i~~~~k~~~r~~~  319 (488)
T KOG3105|consen  272 SLTHHPTVLPMIRADGSKGPAYIVLPEK----KFPPDQGIINRFKLEYRAGW  319 (488)
T ss_pred             CCCcchHHHHHHhhccCcCcceeecccc----CCCCcCCcchHHHHHHHhhh
Confidence            99999887555555444444 4666666    89999999999999999986

>COG3335 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=93.45  E-value=0.52  Score=33.54  Aligned_cols=78  Identities=22%  Similarity=0.380  Sum_probs=57.8

Q ss_pred             eEEecCCCCCchHHHHHHHHHHHHhhhhcCCCCeEEEeec-CcccchhhHHhhhhccceEEeecCCCCCCCCCcccchhh
Q psy16521         36 LGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDN-HETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVF  114 (201)
Q Consensus        36 ~~~~s~~Gw~t~~i~~~wl~~f~~~~~~~~~~~~lLilD~-~~sh~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f  114 (201)
                      .......+-++.+.+..|++.+.....  . .+..+++|+ ...|......+.++..+..++++|+++.. +.|.+. ++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~flp~y~p~-~n~ie~-~~   88 (132)
T COG3335          14 IERMGLITEANKKFFIGFLRIYLWLVL--K-KPIVLILDNVASFHRKKALKEDAEENGIHLLFLPPYSPD-LNPIEY-AW   88 (132)
T ss_pred             eeEeeeccccCHHHHHHHHHHHhhhhc--c-CceEEEecCCcccchHHHHHHHHHhCCccEEEcCCCCCC-ccHHHH-HH
Confidence            344555666888899999987543322  3 677888998 77777778888999999999999999987 556655 45


Q ss_pred             hhhH
Q psy16521        115 SPFK  118 (201)
Q Consensus       115 ~~lK  118 (201)
                      +.+|
T Consensus        89 ~~~k   92 (132)
T COG3335          89 KKLK   92 (132)
T ss_pred             HHHH
Confidence            5555

>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces

Probab=90.58  E-value=0.78  Score=39.14  Aligned_cols=93  Identities=23%  Similarity=0.415  Sum_probs=62.3

Q ss_pred             CCCCceEEecCCCCCc-------hHHHHHHHHHHHHhh-hhc--CCCCeEEEeecCcccch------hhHHhhhhcc--c
Q psy16521         31 APEGSLGFANKSGWSS-------TEIFFETIKHIQNQI-KAS--KENPALILMDNHETHQS------MEAIEYCRAS--G   92 (201)
Q Consensus        31 ~~~~~~~~~s~~Gw~t-------~~i~~~wl~~f~~~~-~~~--~~~~~lLilD~~~sh~s------~~~~~~~~~~--~   92 (201)
                      .|-|++-.....||++       .+...+=|+.++..+ +.+  .-+..|+..|+-++.-+      .++++++.+.  .
T Consensus       137 ~PyGiyd~~~n~g~v~vg~s~dTa~Fav~~i~~WW~~~g~~~yp~a~~lli~~D~GgsN~~r~r~wk~~L~~la~~~gl~  216 (311)
T PF07592_consen  137 IPYGIYDPAANEGWVSVGTSHDTADFAVDSIRRWWEEMGKARYPHAKRLLITADNGGSNGSRRRLWKKRLQELADETGLS  216 (311)
T ss_pred             ccceeEeccCCeEEEEEecCcccHHHHHHHHHHHHHHhChhhcCchheEEEeccCCCCccchhHHHHHHHHHHHHHhCCE
Confidence            4566766777788875       444444445444444 222  24567778886554432      4567777765  5


Q ss_pred             eEEeecCCCCCCCCCcccchhhhhhHHHHHHh
Q psy16521         93 ITLLTFPPHKTDELQPLDVAVFSPFKNRLKAG  124 (201)
Q Consensus        93 I~l~~lP~~~t~~lQPLD~~~f~~lK~~~~~~  124 (201)
                      |.+.++||+++- ..|++..+|+.+-..|+-.
T Consensus       217 I~v~hyPP~tSK-wN~IEHRlfs~is~~w~G~  247 (311)
T PF07592_consen  217 IRVCHYPPGTSK-WNPIEHRLFSHISRNWRGR  247 (311)
T ss_pred             EEEEEcCCCccc-ccchhhhHhHhhhhhcCCC
Confidence            889999999876 6899988999988888654

More information about these proteins can be found at Protein of the Month: Transposase [].

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known

Probab=89.76  E-value=0.35  Score=34.35  Aligned_cols=37  Identities=27%  Similarity=0.440  Sum_probs=32.9

Q ss_pred             CeEEEeecCcccchhhHHhhhhccceEEeecCCCCCC
Q psy16521         68 PALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTD  104 (201)
Q Consensus        68 ~~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t~  104 (201)
                      |..+..|+.+...+..+.++|++.+|.+...||+..+
T Consensus        68 p~~i~tD~g~~f~~~~~~~~~~~~~i~~~~~~~~~p~  104 (120)
T PF00665_consen   68 PRVIRTDNGSEFTSHAFEAWCKHLGIKHVFTPPYTPQ  104 (120)
T ss_dssp             -SEEEEESCHHHHSHHHHHHHHHHT-EEEESSTSSTH
T ss_pred             ceecccccccccccchhhhHHHHcCceEeeCCCCChh
Confidence            8999999999999999999999999999999998865

However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....

>PHA02517 putative transposase OrfB; Reviewed

Probab=85.84  E-value=4.3  Score=33.59  Aligned_cols=77  Identities=12%  Similarity=0.111  Sum_probs=52.5

Q ss_pred             CCCCchHHHHHHHHHHHHhhhhcCCCCeEEEeecCcccchhhHHhhhhccceEEeecCCCCCCCCCcccchhhhhhHHHH
Q psy16521         42 SGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRL  121 (201)
Q Consensus        42 ~Gw~t~~i~~~wl~~f~~~~~~~~~~~~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f~~lK~~~  121 (201)
                      ..-++.+...+.|+.......  .....++..|+-+...+..+.++|++.+|...+.++++..---+++. +|+.||..+
T Consensus       146 ~~~~~~~~~~~~l~~a~~~~~--~~~~~i~~sD~G~~y~s~~~~~~~~~~gi~~~~~~~~~P~~N~~iEr-~~~tlK~e~  222 (277)
T PHA02517        146 SSSMDTDFVLDALEQALWARG--RPGGLIHHSDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAPAES-INGLYKAEV  222 (277)
T ss_pred             CCCCChHHHHHHHHHHHHhcC--CCcCcEeecccccccchHHHHHHHHHcCcccccCCCCCCCCccccch-hHhhhhhhh
Confidence            334666777777764322111  12334666788888888899999999999999999998665445554 677777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	201
2f7t_A	227	MOS1 transposase; RNAse-H like fold, DDD motif, DN	98.28
3f2k_A	226	Histone-lysine N-methyltransferase setmar; histone	98.07
3hot_A	345	Transposable element mariner, complete CDS; protei	98.03
1cxq_A	162	Avian sarcoma virus integrase; mixed beta-sheet su	87.67
2x78_A	200	Integrase; viral protein, DNA-directed DNA polyme	80.03

>2f7t_A MOS1 transposase; RNAse-H like fold, DDD motif, DNA binding protein; 2.25A {Drosophila mauritiana}

Probab=98.28  E-value=9.1e-07  Score=70.55  Aligned_cols=82  Identities=15%  Similarity=0.252  Sum_probs=69.4

Q ss_pred             CCCCCchHHHHHHHHHHHHhhhhc-----CCCC-eEEEeecCcccchhhHHhhhhccceEEeecCCCCCCCCCcccchhh
Q psy16521         41 KSGWSSTEIFFETIKHIQNQIKAS-----KENP-ALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVF  114 (201)
Q Consensus        41 ~~Gw~t~~i~~~wl~~f~~~~~~~-----~~~~-~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f  114 (201)
                      +.|-+|.+.+.++|+.+.+.+...     ..+. +++++|+.+.|.+..+.+++.+.++.+++.||++.. |.|+|..+|
T Consensus        92 ~~~~in~~~y~~~L~~l~~~~~~~~p~~~~~~~~~~~~~Dna~~H~~~~~~~~~~~~~~~~~~~p~ysPd-lnpie~~~w  170 (227)
T 2f7t_A           92 PGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPD-LAPSDYHLF  170 (227)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHCHHHHTTSSCCEEECCCCGGGGSHHHHHHHHHHTCEECCCCTTCGG-GCHHHHTHH
T ss_pred             CCceecHHHHHHHHHHHHHHHHHhChHhhccCCceEEEECCCchhhhHHHHHHHHHhCcccccCCCCCCC-cCcccchhh
Confidence            378899999999998877766421     1234 899999999999999999999999999999999988 889997799


Q ss_pred             hhhHHHHHH
Q psy16521        115 SPFKNRLKA  123 (201)
Q Consensus       115 ~~lK~~~~~  123 (201)
                      +.+|+.++.
T Consensus       171 ~~lk~~l~~  179 (227)
T 2f7t_A          171 ASMGHALAE  179 (227)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999887654

>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A 3k9j_A

Probab=98.07  E-value=3e-06  Score=67.67  Aligned_cols=82  Identities=22%  Similarity=0.402  Sum_probs=67.4

Q ss_pred             cCCCCCchHHHHHHHHHHHHhhh---hc--CCCCeEEEeecCcccchhhHHhhhhccceEEeecCCCCCCCCCcccchhh
Q psy16521         40 NKSGWSSTEIFFETIKHIQNQIK---AS--KENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVF  114 (201)
Q Consensus        40 s~~Gw~t~~i~~~wl~~f~~~~~---~~--~~~~~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f  114 (201)
                      .+.|-||.+.+.+.|+.+.+.++   +.  ..+.+++++|+.+.|.+..+.+++.+.++.+++.||++.. |.|+|..+|
T Consensus        91 ~~~~tinse~Y~~~l~~l~~~l~~~~~~~~~~~~~i~~~Dna~~H~~~~~~~~l~~~~~~~~~~P~ySPd-lnpie~~~w  169 (226)
T 3f2k_A           91 NPGETITSEKYAQEIDEMNQKLQRLQLALVNRKGPILLHDNARPHVAQPTLQKLNELGYEVLPHPPYSPD-LLPTNYHVF  169 (226)
T ss_dssp             CTTCCCSHHHHHHHHHHHHHHHHHHTC----CCCCEEECCCCHHHHSTTHHHHHHHHTCEECCCCTTCGG-GCHHHHTHH
T ss_pred             cCCcccCHHHHHHHHHHHHHHHhhhhhHhhccCCcEEEeCCCccchhhhHHHHHHhhcceeecCCCCCCC-cchHHHHHH
Confidence            34578999999999976544432   21  1456899999999999999999999999999999999998 899997789


Q ss_pred             hhhHHHHH
Q psy16521        115 SPFKNRLK  122 (201)
Q Consensus       115 ~~lK~~~~  122 (201)
                      +.+|+.++
T Consensus       170 ~~lk~~l~  177 (226)
T 3f2k_A          170 KHLNNFLQ  177 (226)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99987764

>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*

Probab=98.03  E-value=9.3e-06  Score=68.09  Aligned_cols=81  Identities=14%  Similarity=0.248  Sum_probs=68.1

Q ss_pred             CCCCCchHHHHHHHHHHHHhhhhc-C-----CCCeEEEeecCcccchhhHHhhhhccceEEeecCCCCCCCCCcccchhh
Q psy16521         41 KSGWSSTEIFFETIKHIQNQIKAS-K-----ENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVF  114 (201)
Q Consensus        41 ~~Gw~t~~i~~~wl~~f~~~~~~~-~-----~~~~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f  114 (201)
                      ..+-++.+.+.++|+.+.+.+... .     ++.++|++|+.+.|.+..+.+++.++++.+++.||++.. +.|+|..+|
T Consensus       210 ~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~~h~~~~~~~~l~~~~~~~~~~p~~spd-lnpie~~~~  288 (345)
T 3hot_A          210 PGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPD-LAPSDYHLF  288 (345)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCTTTTSHHHHHHHHHTTCEECCCCTTCGG-GCHHHHTHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCCccccHHHHHHHHHcCcEeccCCCCCCC-cccccchhh
Confidence            356799999999998776655432 1     457899999999999999999999999999999999987 789997799


Q ss_pred             hhhHHHHH
Q psy16521        115 SPFKNRLK  122 (201)
Q Consensus       115 ~~lK~~~~  122 (201)
                      +.+|..+.
T Consensus       289 ~~lk~~~~  296 (345)
T 3hot_A          289 ASMGHALA  296 (345)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99997654

>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A

Probab=87.67  E-value=1.1  Score=32.58  Aligned_cols=76  Identities=14%  Similarity=0.086  Sum_probs=49.5

Q ss_pred             CchHHHHHHHHHHHHhhhhcCCCCeEEEeecCcccchhhHHhhhhccceEEeecCCCCCCCCCcccchhhhhhHHHHHHh
Q psy16521         45 SSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAG  124 (201)
Q Consensus        45 ~t~~i~~~wl~~f~~~~~~~~~~~~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f~~lK~~~~~~  124 (201)
                      .+.+...+.|+......    +.|..+..|+-+...+..+.++|++.+|...+.+|+....--..+ ..++.+|..++..
T Consensus        49 ~~~~~v~~~l~~~~~~~----g~p~~i~sDnG~~f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~~E-r~~~tlk~~~~~~  123 (162)
T 1cxq_A           49 VTSVAAQHHWATAIAVL----GRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVE-RANRLLKDKIRVL  123 (162)
T ss_dssp             CCHHHHHHHHHHHHHHH----CCCSEEECCSCHHHHSHHHHHHHHHHTCEEECCCCC----CHHHH-HHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHH----CCCeEEEeCCchhhhhHHHHHHHHHCCCeEeeCCCCCCccCCEEe-hHHHHHHHHHHHH
Confidence            55666666665433221    346689999999998999999999999999999998754221222 2456666665544


Q ss_pred             H
Q psy16521        125 F  125 (201)
Q Consensus       125 ~  125 (201)
                      +
T Consensus       124 ~  124 (162)
T 1cxq_A          124 A  124 (162)
T ss_dssp             H
T ss_pred             c
Confidence            3

>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A

Probab=80.03  E-value=2.9  Score=31.16  Aligned_cols=59  Identities=20%  Similarity=0.187  Sum_probs=40.0

Q ss_pred             CCCeEEEeecCcccchhhHHhhhhccceEEeecCCCCCCCCCcccchhhhhhHHHHHHhH
Q psy16521         66 ENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGF  125 (201)
Q Consensus        66 ~~~~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f~~lK~~~~~~~  125 (201)
                      +.+..+..|+-+...+..+.++|++.+|...+.+|+....--..+ ..++.+|..++..+
T Consensus        68 g~p~~i~sDnG~~f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~~E-r~~~~l~~~~~~~~  126 (200)
T 2x78_A           68 AIPRVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVE-RKNSDIKRLLTKLL  126 (200)
T ss_dssp             CCCSEEEECSCHHHHSHHHHHHHHHHTCEEEECC-------CHHH-HHHHHHHHHHHHHH
T ss_pred             CCCcEEEecCCcceehHHHHHHHHHcCceEeECCCCCCCccCHhH-hhHHHHHHHHHHHH
Confidence            567899999999998999999999999999999998765322222 24566666655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	201
d1cxqa_	147	Retroviral integrase, catalytic domain {Rous sarco	93.16

>d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Rous sarcoma virus RSV [TaxId: 11886]

Probab=93.16  E-value=0.077  Score=36.80  Aligned_cols=76  Identities=16%  Similarity=0.089  Sum_probs=52.7

Q ss_pred             CchHHHHHHHHHHHHhhhhcCCCCeEEEeecCcccchhhHHhhhhccceEEeecCCCCCCCCCcccchhhhhhHHHHHHh
Q psy16521         45 SSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAG  124 (201)
Q Consensus        45 ~t~~i~~~wl~~f~~~~~~~~~~~~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f~~lK~~~~~~  124 (201)
                      .+.....+++..+....    +.|..+..|+-+...+.++.++|++.+|...+.+|+.... +..=-..++.+|..++..
T Consensus        45 ~t~~~~~~~l~~~~~~~----g~p~~i~sDnG~~F~s~~~~~~~~~~gI~~~~~~p~~P~~-ng~vER~~~tlk~~~~~~  119 (147)
T d1cxqa_          45 VTSVAAQHHWATAIAVL----GRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQG-QAMVERANRLLKDKIRVL  119 (147)
T ss_dssp             CCHHHHHHHHHHHHHHH----CCCSEEECCSCHHHHSHHHHHHHHHHTCEEECCCCC-----CHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHh----CCCeEEEecccccccchhhhhhhhheeEEeeeeccchhhc-CceeehhhHHHHHHHHHH
Confidence            55666666666544332    5678899999999999999999999999999999987653 222223566777766654


Q ss_pred             H
Q psy16521        125 F  125 (201)
Q Consensus       125 ~  125 (201)
                      .
T Consensus       120 ~  120 (147)
T d1cxqa_         120 A  120 (147)
T ss_dssp             H
T ss_pred             H
Confidence            4