Psyllid ID: psy16528

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MNNNNVPTISSNMPAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAPLDW
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHcccEEEEEccccHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHcccEEEEEccccHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mnnnnvptissnmpapstpvsefyqnrsvfvtggtgFMGKVLVEKLLRScpgikniyllmrpkhgqdINGRLAEIINAPLDW
Flexible Loop (DISEMBL)
mnnnnvptissnmpapstPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAPLDW
Low Complexity Region (SEG)
MNNNNVPTISSNMPAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAPLDW
Disordered region (IsUnstruct)
**********************FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEII******
Disordered Region (DISOPRED)
**********************FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAPLDW
Disordered Region (DISEMBL)
*********SSNMPAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAPLDW
Disordered Region (DISPRO)
*****************TPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAPLDW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNNNNVPTISSNMPAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAPLDW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	82	2.2.26 [Sep-21-2011]
A1ZAI5	625	Putative fatty acyl-CoA r	yes	N/A	0.756	0.099	0.725	5e-23
Q5ZM72	515	Fatty acyl-CoA reductase	yes	N/A	0.743	0.118	0.540	2e-14
Q7ZXF5	515	Fatty acyl-CoA reductase	N/A	N/A	0.743	0.118	0.557	3e-14
Q7TNT2	515	Fatty acyl-CoA reductase	yes	N/A	0.743	0.118	0.508	5e-14
Q0P5J1	515	Fatty acyl-CoA reductase	yes	N/A	0.743	0.118	0.475	5e-13
Q960W6	516	Putative fatty acyl-CoA r	no	N/A	0.719	0.114	0.508	8e-13
Q96K12	515	Fatty acyl-CoA reductase	yes	N/A	0.768	0.122	0.460	1e-12
Q922J9	515	Fatty acyl-CoA reductase	no	N/A	0.743	0.118	0.475	2e-12
Q66H50	515	Fatty acyl-CoA reductase	no	N/A	0.743	0.118	0.475	2e-12
Q5R834	515	Fatty acyl-CoA reductase	no	N/A	0.743	0.118	0.475	2e-12

>sp|A1ZAI5|FACR1_DROME Putative fatty acyl-CoA reductase CG5065 OS=Drosophila melanogaster GN=CG5065 PE=3 SV=1

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 56/62 (90%)

Query: 19  PVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINA 78
           P+++FY  RSVF+TGGTGFMGKVLVEKLLRSCP I+NIYLL+RPK GQ+++ RL E++NA
Sbjct: 118 PIAQFYAGRSVFITGGTGFMGKVLVEKLLRSCPEIRNIYLLIRPKRGQEVSARLTELLNA 177

Query: 79  PL 80
           PL
Sbjct: 178 PL 179

Catalyzes the reduction of saturated fatty acyl-CoA to fatty alcohols.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: nEC: 2

>sp|Q5ZM72|FACR1_CHICK Fatty acyl-CoA reductase 1 OS=Gallus gallus GN=FAR1 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 46/61 (75%)

Query: 20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAP 79
          + E+Y+ ++V +TG TGFMGKVL+EKLLRSCP +K +Y+L+RPK GQ    R+ EI +  
Sbjct: 4  IPEYYEGKNVLLTGATGFMGKVLLEKLLRSCPKVKAVYVLVRPKAGQTPEARIEEITSCK 63

Query: 80 L 80
          L
Sbjct: 64 L 64

Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols.

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q7ZXF5|FACR1_XENLA Fatty acyl-CoA reductase 1 OS=Xenopus laevis GN=far1 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 46/61 (75%)

Query: 20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAP 79
          + EFYQ ++V +TG TGFMGKVL+EKLLRSCP  K +Y+L+R K GQ    R+AE+++  
Sbjct: 4  IPEFYQGKNVLITGATGFMGKVLLEKLLRSCPNTKAVYVLVRHKAGQKPRERVAEMMSCK 63

Query: 80 L 80
          L
Sbjct: 64 L 64

Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols.

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q7TNT2|FACR2_MOUSE Fatty acyl-CoA reductase 2 OS=Mus musculus GN=Far2 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 47/61 (77%)

Query: 20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAP 79
          ++ FY N+S+ +TG TGF+GKVL+EKL R+ P +K IY+L+RPK GQ +  R+ +I+N+ 
Sbjct: 4  IAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQILNSK 63

Query: 80 L 80
          L
Sbjct: 64 L 64

Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The preferred substrates are C16, C18, C18:1 and C18:2 but low activity can be observed with C10-C14 substrates.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q0P5J1|FACR2_BOVIN Fatty acyl-CoA reductase 2 OS=Bos taurus GN=FAR2 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAP 79
          ++ FY  +S+ +TG TGFMGKVL+EKL R+ P +K +Y+L+RPK GQ +  R+ +I+++ 
Sbjct: 4  IAAFYGGKSILITGATGFMGKVLMEKLFRTSPDLKVVYILVRPKQGQTLQQRVFQILDSK 63

Query: 80 L 80
          L
Sbjct: 64 L 64

Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The preferred substrates are C16, C18, C18:1 and C18:2 but low activity can be observed with C10-C14 substrates.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q960W6|FACR3_DROME Putative fatty acyl-CoA reductase CG8306 OS=Drosophila melanogaster GN=CG8306 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 43/59 (72%)

Query: 17 STPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEI 75
          S+P+++FY  R+VF+TG TGF+G  +VEKLLR  P +  +YLLMR K G+ +  RL E+
Sbjct: 3  SSPITDFYAGRNVFITGATGFVGVTIVEKLLRDVPNVGTLYLLMRAKKGKSVQERLEEL 61

Catalyzes the reduction of saturated fatty acyl-CoA to fatty alcohols.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q96K12|FACR2_HUMAN Fatty acyl-CoA reductase 2 OS=Homo sapiens GN=FAR2 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 47/63 (74%)

Query: 18 TPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIIN 77
          + ++ FY  +S+ +TG TGF+GKVL+EKL R+ P +K IY+L+RPK GQ +  R+ +I++
Sbjct: 2  STIAAFYGGKSILITGATGFLGKVLMEKLFRTSPDLKVIYILVRPKAGQTLQQRVFQILD 61

Query: 78 APL 80
          + L
Sbjct: 62 SKL 64

Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The preferred substrates are C16, C18, C18:1 and C18:2 but low activity can be observed with C10-C14 substrates.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q922J9|FACR1_MOUSE Fatty acyl-CoA reductase 1 OS=Mus musculus GN=Far1 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 47/61 (77%)

Query: 20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAP 79
          + E+Y+ +++ +TG TGF+GKVL+EKLLRSCP + ++Y+L+R K GQ    R+ EI+++ 
Sbjct: 4  IPEYYEGKNILLTGATGFLGKVLLEKLLRSCPRVNSVYVLVRQKAGQTPQERVEEILSSK 63

Query: 80 L 80
          L
Sbjct: 64 L 64

Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q66H50|FACR1_RAT Fatty acyl-CoA reductase 1 OS=Rattus norvegicus GN=Far1 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAP 79
          + E+Y+ +++ +TG TGF+GKVL+EKLLRSCP + ++Y+L+R K GQ    R+ EI++  
Sbjct: 4  IPEYYEGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEILSGK 63

Query: 80 L 80
          L
Sbjct: 64 L 64

Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q5R834|FACR1_PONAB Fatty acyl-CoA reductase 1 OS=Pongo abelii GN=FAR1 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAP 79
          + E+Y+ ++V +TG TGF+GKVL+EKLLRSCP + ++Y+L+R K GQ    R+ E+++  
Sbjct: 4  IPEYYEGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEVLSGK 63

Query: 80 L 80
          L
Sbjct: 64 L 64

Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
345489767	517	PREDICTED: putative fatty acyl-CoA reduc	0.878	0.139	0.698	2e-23
242012541	522	male sterility domain-containing protein	0.768	0.120	0.793	4e-23
383859001	516	PREDICTED: putative fatty acyl-CoA reduc	0.768	0.122	0.746	2e-22
307176727	606	Fatty acyl-CoA reductase 1 [Camponotus f	0.768	0.103	0.746	4e-22
157115700	531	hypothetical protein AaeL_AAEL007298 [Ae	0.743	0.114	0.754	8e-22
157115702	483	hypothetical protein AaeL_AAEL007298 [Ae	0.743	0.126	0.754	9e-22
195488129	624	GE11808 [Drosophila yakuba] gi|194178284	0.756	0.099	0.725	2e-21
194882463	624	GG20619 [Drosophila erecta] gi|190658517	0.756	0.099	0.725	2e-21
307211545	516	Fatty acyl-CoA reductase 1 [Harpegnathos	0.878	0.139	0.666	2e-21
24654209	625	CG5065, isoform A [Drosophila melanogast	0.756	0.099	0.725	2e-21

>gi|345489767|ref|XP_003426226.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like isoform 2 [Nasonia vitripennis] gi|345489769|ref|XP_001601849.2| PREDICTED: putative fatty acyl-CoA reductase CG5065-like isoform 1 [Nasonia vitripennis]

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/73 (69%), Positives = 61/73 (83%), Gaps = 1/73 (1%)

Query: 9  ISSNMPAPS-TPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQD 67
          +++ MP    T V EFY++RS+F+TGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK GQ 
Sbjct: 1  MATTMPGVGYTSVKEFYRDRSIFITGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKRGQG 60

Query: 68 INGRLAEIINAPL 80
          +  RL E++NAPL
Sbjct: 61 VQQRLQELLNAPL 73

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012541|ref|XP_002426991.1| male sterility domain-containing protein, putative [Pediculus humanus corporis] gi|212511220|gb|EEB14253.1| male sterility domain-containing protein, putative [Pediculus humanus corporis]

 Score =  111 bits (278), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 58/63 (92%)

Query: 18 TPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIIN 77
          +PV++FY +RSVFVTGGTGFMGKVLVEKLLRSCPGIK IYLL+RPK GQDI+ RL EII+
Sbjct: 14 SPVADFYHDRSVFVTGGTGFMGKVLVEKLLRSCPGIKKIYLLIRPKRGQDIHARLGEIID 73

Query: 78 APL 80
          +PL
Sbjct: 74 SPL 76

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859001|ref|XP_003704987.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Megachile rotundata]

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/63 (74%), Positives = 56/63 (88%)

Query: 18 TPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIIN 77
          T V EFY++RS+F+TGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK GQD+  RL ++++
Sbjct: 10 TSVKEFYRDRSIFITGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKRGQDVQQRLRQLLD 69

Query: 78 APL 80
           PL
Sbjct: 70 GPL 72

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176727|gb|EFN66142.1| Fatty acyl-CoA reductase 1 [Camponotus floridanus]

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/63 (74%), Positives = 56/63 (88%)

Query: 18  TPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIIN 77
           T V +FY++RS+F+TGGTGFMGKVLVEKLLRSCP IKNIYLLMRPK GQ++  RL E++N
Sbjct: 100 TSVKDFYRDRSIFITGGTGFMGKVLVEKLLRSCPDIKNIYLLMRPKKGQNVQERLQELLN 159

Query: 78  APL 80
           APL
Sbjct: 160 APL 162

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157115700|ref|XP_001652667.1| hypothetical protein AaeL_AAEL007298 [Aedes aegypti] gi|108876814|gb|EAT41039.1| AAEL007298-PB [Aedes aegypti]

 Score =  107 bits (267), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 46/61 (75%), Positives = 56/61 (91%)

Query: 20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAP 79
          V+EFY  RS+F+TGGTGFMGKVL+EKLLRSCPGIKNI++L+RPK GQDI+ RL EI+N+P
Sbjct: 24 VAEFYHGRSIFITGGTGFMGKVLIEKLLRSCPGIKNIFILIRPKRGQDISARLTEILNSP 83

Query: 80 L 80
          L
Sbjct: 84 L 84

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157115702|ref|XP_001652668.1| hypothetical protein AaeL_AAEL007298 [Aedes aegypti] gi|108876815|gb|EAT41040.1| AAEL007298-PA [Aedes aegypti]

 Score =  107 bits (267), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 46/61 (75%), Positives = 56/61 (91%)

Query: 20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAP 79
          V+EFY  RS+F+TGGTGFMGKVL+EKLLRSCPGIKNI++L+RPK GQDI+ RL EI+N+P
Sbjct: 24 VAEFYHGRSIFITGGTGFMGKVLIEKLLRSCPGIKNIFILIRPKRGQDISARLTEILNSP 83

Query: 80 L 80
          L
Sbjct: 84 L 84

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195488129|ref|XP_002092183.1| GE11808 [Drosophila yakuba] gi|194178284|gb|EDW91895.1| GE11808 [Drosophila yakuba]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 56/62 (90%)

Query: 19  PVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINA 78
           P+++FY  RSVF+TGGTGFMGKVLVEKLLRSCP I+NIYLL+RPK GQ+++ RL E++NA
Sbjct: 117 PIAQFYAGRSVFITGGTGFMGKVLVEKLLRSCPDIRNIYLLIRPKRGQEVSARLTELLNA 176

Query: 79  PL 80
           PL
Sbjct: 177 PL 178

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194882463|ref|XP_001975330.1| GG20619 [Drosophila erecta] gi|190658517|gb|EDV55730.1| GG20619 [Drosophila erecta]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 56/62 (90%)

Query: 19  PVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINA 78
           P+++FY  RSVF+TGGTGFMGKVLVEKLLRSCP I+NIYLL+RPK GQ+++ RL E++NA
Sbjct: 117 PIAQFYAGRSVFITGGTGFMGKVLVEKLLRSCPDIRNIYLLIRPKRGQEVSARLTELLNA 176

Query: 79  PL 80
           PL
Sbjct: 177 PL 178

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211545|gb|EFN87623.1| Fatty acyl-CoA reductase 1 [Harpegnathos saltator]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/75 (66%), Positives = 60/75 (80%), Gaps = 3/75 (4%)

Query: 6  VPTISSNMPAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG 65
          + T+SSN       V EFY++RS+F+TGGTGFMGKVLVEKLLRSCP IKNIYLLMRPK  
Sbjct: 1  MATMSSN---EYMSVREFYRDRSIFITGGTGFMGKVLVEKLLRSCPDIKNIYLLMRPKKS 57

Query: 66 QDINGRLAEIINAPL 80
          QD+  RL E+++APL
Sbjct: 58 QDVQQRLQELLDAPL 72

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24654209|ref|NP_611143.1| CG5065, isoform A [Drosophila melanogaster] gi|281363509|ref|NP_001163168.1| CG5065, isoform B [Drosophila melanogaster] gi|281363511|ref|NP_001163169.1| CG5065, isoform C [Drosophila melanogaster] gi|386768124|ref|NP_001246370.1| CG5065, isoform D [Drosophila melanogaster] gi|386768126|ref|NP_001246371.1| CG5065, isoform E [Drosophila melanogaster] gi|238064958|sp|A1ZAI5.1|FACR1_DROME RecName: Full=Putative fatty acyl-CoA reductase CG5065 gi|7302902|gb|AAF57974.1| CG5065, isoform A [Drosophila melanogaster] gi|272432512|gb|ACZ94440.1| CG5065, isoform B [Drosophila melanogaster] gi|272432513|gb|ACZ94441.1| CG5065, isoform C [Drosophila melanogaster] gi|383302529|gb|AFH08123.1| CG5065, isoform D [Drosophila melanogaster] gi|383302530|gb|AFH08124.1| CG5065, isoform E [Drosophila melanogaster]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 56/62 (90%)

Query: 19  PVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINA 78
           P+++FY  RSVF+TGGTGFMGKVLVEKLLRSCP I+NIYLL+RPK GQ+++ RL E++NA
Sbjct: 118 PIAQFYAGRSVFITGGTGFMGKVLVEKLLRSCPEIRNIYLLIRPKRGQEVSARLTELLNA 177

Query: 79  PL 80
           PL
Sbjct: 178 PL 179

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
FB|FBgn0034145	625	CG5065 [Drosophila melanogaste	0.756	0.099	0.725	5.9e-21
ZFIN|ZDB-GENE-040426-2908	464	far1 "fatty acyl CoA reductase	0.743	0.131	0.573	1.2e-14
FB|FBgn0033464	517	CG1441 [Drosophila melanogaste	0.682	0.108	0.625	2.6e-14
UNIPROTKB|Q5ZM72	515	FAR1 "Fatty acyl-CoA reductase	0.743	0.118	0.540	2.4e-13
UNIPROTKB|E1C023	517	FAR1 "Fatty acyl-CoA reductase	0.743	0.117	0.540	2.4e-13
ZFIN|ZDB-GENE-060503-367	515	si:dkey-97m3.1 "si:dkey-97m3.1	0.743	0.118	0.524	3.1e-13
UNIPROTKB|D4A2S1	503	Far2 "Protein Far2" [Rattus no	0.743	0.121	0.508	7.9e-13
MGI|MGI:2687035	515	Far2 "fatty acyl CoA reductase	0.743	0.118	0.508	8.3e-13
RGD|1565966	515	Far2 "fatty acyl CoA reductase	0.743	0.118	0.508	8.3e-13
UNIPROTKB|E1C6H7	511	FAR2 "Uncharacterized protein"	0.695	0.111	0.561	1.3e-12

FB|FBgn0034145 CG5065 [Drosophila melanogaster (taxid:7227)]

 Score = 255 (94.8 bits), Expect = 5.9e-21, P = 5.9e-21
 Identities = 45/62 (72%), Positives = 56/62 (90%)

Query:    19 PVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINA 78
             P+++FY  RSVF+TGGTGFMGKVLVEKLLRSCP I+NIYLL+RPK GQ+++ RL E++NA
Sbjct:   118 PIAQFYAGRSVFITGGTGFMGKVLVEKLLRSCPEIRNIYLLIRPKRGQEVSARLTELLNA 177

Query:    79 PL 80
             PL
Sbjct:   178 PL 179

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-040426-2908 far1 "fatty acyl CoA reductase 1" [Danio rerio (taxid:7955)]

 Score = 194 (73.4 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 35/61 (57%), Positives = 48/61 (78%)

Query:    20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAP 79
             + E+Y  ++V +TG TGFMGKVL+EKLLRSCPG+K  Y+L+RPK GQ  + R+A++IN  
Sbjct:     4 IPEYYVGKNVLITGATGFMGKVLLEKLLRSCPGVKAAYVLVRPKAGQAPDARIADMINCK 63

Query:    80 L 80
             L
Sbjct:    64 L 64

GO:0000166 "nucleotide binding" evidence=IEA

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0033464 CG1441 [Drosophila melanogaster (taxid:7227)]

 Score = 192 (72.6 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 35/56 (62%), Positives = 47/56 (83%)

Query:    20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEI 75
             ++E ++ RS+F+TGGTGF+GKVLVEKLLRSC G+K IYLL+RPK G+D   R+ +I
Sbjct:    28 IAECFKGRSLFITGGTGFLGKVLVEKLLRSCGGLKRIYLLIRPKKGKDPQERIKDI 83

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q5ZM72 FAR1 "Fatty acyl-CoA reductase 1" [Gallus gallus (taxid:9031)]

 Score = 183 (69.5 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 33/61 (54%), Positives = 46/61 (75%)

Query:    20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAP 79
             + E+Y+ ++V +TG TGFMGKVL+EKLLRSCP +K +Y+L+RPK GQ    R+ EI +  
Sbjct:     4 IPEYYEGKNVLLTGATGFMGKVLLEKLLRSCPKVKAVYVLVRPKAGQTPEARIEEITSCK 63

Query:    80 L 80
             L
Sbjct:    64 L 64

GO:0000166 "nucleotide binding" evidence=IEA

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

UNIPROTKB|E1C023 FAR1 "Fatty acyl-CoA reductase 1" [Gallus gallus (taxid:9031)]

 Score = 183 (69.5 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 33/61 (54%), Positives = 46/61 (75%)

Query:    20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAP 79
             + E+Y+ ++V +TG TGFMGKVL+EKLLRSCP +K +Y+L+RPK GQ    R+ EI +  
Sbjct:     4 IPEYYEGKNVLLTGATGFMGKVLLEKLLRSCPKVKAVYVLVRPKAGQTPEARIEEITSCK 63

Query:    80 L 80
             L
Sbjct:    64 L 64

GO:0000166 "nucleotide binding" evidence=IEA

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0008611 "ether lipid biosynthetic process" evidence=IEA

GO:0010025 "wax biosynthetic process" evidence=IEA

GO:0035336 "long-chain fatty-acyl-CoA metabolic process" evidence=IEA

GO:0046474 "glycerophospholipid biosynthetic process" evidence=IEA

GO:0050062 "long-chain-fatty-acyl-CoA reductase activity" evidence=IEA

ZFIN|ZDB-GENE-060503-367 si:dkey-97m3.1 "si:dkey-97m3.1" [Danio rerio (taxid:7955)]

 Score = 182 (69.1 bits), Expect = 3.1e-13, P = 3.1e-13
 Identities = 32/61 (52%), Positives = 47/61 (77%)

Query:    20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAP 79
             +SE+Y  ++V +TG TGFMGKVLVEKLLRSCP +  +Y+L+RPK GQ ++ R+ +++   
Sbjct:     4 ISEWYAGKNVLITGATGFMGKVLVEKLLRSCPDVNALYILVRPKAGQSMSERVQDMMKCK 63

Query:    80 L 80
             L
Sbjct:    64 L 64

GO:0000166 "nucleotide binding" evidence=IEA

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IEA

UNIPROTKB|D4A2S1 Far2 "Protein Far2" [Rattus norvegicus (taxid:10116)]

 Score = 178 (67.7 bits), Expect = 7.9e-13, P = 7.9e-13
 Identities = 31/61 (50%), Positives = 47/61 (77%)

Query:    20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAP 79
             ++ FY N+S+ +TG TGF+GKVL+EKL R+ P +K IY+L+RPK GQ +  R+ +I+N+ 
Sbjct:     4 IAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQILNSK 63

Query:    80 L 80
             L
Sbjct:    64 L 64

GO:0000166 "nucleotide binding" evidence=IEA

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IEA

MGI|MGI:2687035 Far2 "fatty acyl CoA reductase 2" [Mus musculus (taxid:10090)]

 Score = 178 (67.7 bits), Expect = 8.3e-13, P = 8.3e-13
 Identities = 31/61 (50%), Positives = 47/61 (77%)

Query:    20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAP 79
             ++ FY N+S+ +TG TGF+GKVL+EKL R+ P +K IY+L+RPK GQ +  R+ +I+N+ 
Sbjct:     4 IAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQILNSK 63

Query:    80 L 80
             L
Sbjct:    64 L 64

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0010025 "wax biosynthetic process" evidence=TAS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0035336 "long-chain fatty-acyl-CoA metabolic process" evidence=ISO

GO:0050062 "long-chain-fatty-acyl-CoA reductase activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=ISO

RGD|1565966 Far2 "fatty acyl CoA reductase 2" [Rattus norvegicus (taxid:10116)]

 Score = 178 (67.7 bits), Expect = 8.3e-13, P = 8.3e-13
 Identities = 31/61 (50%), Positives = 47/61 (77%)

Query:    20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAP 79
             ++ FY N+S+ +TG TGF+GKVL+EKL R+ P +K IY+L+RPK GQ +  R+ +I+N+ 
Sbjct:     4 IAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQILNSK 63

Query:    80 L 80
             L
Sbjct:    64 L 64

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA;ISO

GO:0035336 "long-chain fatty-acyl-CoA metabolic process" evidence=IEA;ISO

GO:0050062 "long-chain-fatty-acyl-CoA reductase activity" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IEA;ISO

UNIPROTKB|E1C6H7 FAR2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 176 (67.0 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 32/57 (56%), Positives = 44/57 (77%)

Query:    20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEII 76
             VS +Y  ++V +TG TGFMGKVLVEKLLRS P +K +Y+L+RPK GQ +  R+A ++
Sbjct:     4 VSAYYNGKTVLITGATGFMGKVLVEKLLRSSPDVKAVYILVRPKAGQSMQERVANML 60

GO:0000166 "nucleotide binding" evidence=IEA

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0035336 "long-chain fatty-acyl-CoA metabolic process" evidence=IEA

GO:0050062 "long-chain-fatty-acyl-CoA reductase activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A1ZAI5	FACR1_DROME	1, ., 2, ., 1, ., n, 2	0.7258	0.7560	0.0992	yes	N/A
Q7TNT2	FACR2_MOUSE	1, ., 2, ., 1, ., n, 2	0.5081	0.7439	0.1184	yes	N/A
Q5ZM72	FACR1_CHICK	1, ., 2, ., 1, ., n, 2	0.5409	0.7439	0.1184	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	82
cd05236	320	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F	2e-23
pfam07993	245	pfam07993, NAD_binding_4, Male sterility protein	6e-17
PLN02503	605	PLN02503, PLN02503, fatty acyl-CoA reductase 2	4e-13
PLN02996	491	PLN02996, PLN02996, fatty acyl-CoA reductase	9e-12
cd05263	293	cd05263, MupV_like_SDR_e, Pseudomonas fluorescens	5e-07
PRK07201	657	PRK07201, PRK07201, short chain dehydrogenase; Pro	1e-06
cd05235	290	cd05235, SDR_e1, extended (e) SDRs, subgroup 1	2e-05
COG3320	382	COG3320, COG3320, Putative dehydrogenase domain of	3e-05
cd05228	318	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr	7e-05
TIGR01746	367	TIGR01746, Thioester-redct, thioester reductase do	1e-04
cd05262	291	cd05262, SDR_a7, atypical (a) SDRs, subgroup 7	3e-04
TIGR03443	1389	TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh	3e-04
COG0451	314	COG0451, WcaG, Nucleoside-diphosphate-sugar epimer	3e-04
cd08946	200	cd08946, SDR_e, extended (e) SDRs	4e-04
COG1086	588	COG1086, COG1086, Predicted nucleoside-diphosphate	6e-04
cd05252	336	cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata	6e-04
pfam01370	233	pfam01370, Epimerase, NAD dependent epimerase/dehy	0.002
TIGR02622	349	TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra	0.003
cd05237	287	cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l	0.004
PLN02686	367	PLN02686, PLN02686, cinnamoyl-CoA reductase	0.004

>gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs

 Score = 89.7 bits (223), Expect = 2e-23
 Identities = 32/54 (59%), Positives = 39/54 (72%)

Query: 27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAPL 80
          +SV +TG TGF+GKVL+EKLLRSCP I  IYLL+R K GQ    RL E++   L
Sbjct: 1  KSVLITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQSAEERLRELLKDKL 54

SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320

>gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein

 Score = 71.5 bits (176), Expect = 6e-17
 Identities = 25/44 (56%), Positives = 32/44 (72%), Gaps = 1/44 (2%)

Query: 31 VTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAE 74
          +TG TGF+GKVL+EKLLRS P +K IY L+R K G+    RL +
Sbjct: 1  LTGATGFLGKVLLEKLLRSTPEVK-IYCLVRAKDGESALERLRQ 43

This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245

>gnl|CDD|215279 PLN02503, PLN02503, fatty acyl-CoA reductase 2

 Score = 62.2 bits (151), Expect = 4e-13
 Identities = 26/62 (41%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 20  VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLA-EIINA 78
           ++EF + ++  +TG TGF+ KVL+EK+LR+ P +  IYLL++ K  +    RL  E+I+A
Sbjct: 113 IAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDA 172

Query: 79  PL 80
            L
Sbjct: 173 EL 174

Length = 605

>gnl|CDD|215538 PLN02996, PLN02996, fatty acyl-CoA reductase

 Score = 58.2 bits (141), Expect = 9e-12
 Identities = 20/42 (47%), Positives = 31/42 (73%)

Query: 20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR 61
            +F +N+++ VTG TGF+ K+ VEK+LR  P +K +YLL+R
Sbjct: 5  CVQFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLR 46

Length = 491

>gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs

 Score = 44.7 bits (106), Expect = 5e-07
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAE 74
          VFVTGGTGF+G+ LV++LL +      + +L+R +   + + R+ E
Sbjct: 1  VFVTGGTGFLGRHLVKRLLEN---GFKVLVLVRSESLGEAHERIEE 43

This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 30 FVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEII 76
          FVTGGTGF+G+ LV +LL        +++L+R +       RL  + 
Sbjct: 4  FVTGGTGFIGRRLVSRLLDRRREAT-VHVLVRRQS----LSRLEALA 45

Length = 657

>gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINA 78
          +V +TG TGF+G  L+ +LL+    +  IY L+R K  +    RL + +  
Sbjct: 1  TVLLTGATGFLGAYLLRELLK-RKNVSKIYCLVRAKDEEAALERLIDNLKE 50

This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290

>gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRL 72
          R+V +TG TGF+G  L+ +LL        +  L+R +  +    RL
Sbjct: 1  RNVLLTGATGFLGAYLLLELLDRSDA--KVICLVRAQSDEAALARL 44

Length = 382

>gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs

 Score = 38.8 bits (91), Expect = 7e-05
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 9/54 (16%)

Query: 29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAPLDW 82
          + VTG TGF+G  LV  LL    G + +  L+R             +   P++ 
Sbjct: 1  ILVTGATGFLGSNLVRALLAQ--GYR-VRALVRSGS------DAVLLDGLPVEV 45

This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318

>gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR---PKHGQD 67
          +V +TG TGF+G  L+E+LLR     K +  L+R    +H  +
Sbjct: 1  TVLLTGATGFLGAYLLEELLRRSTQAK-VICLVRAASEEHAME 42

This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367

>gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 29 VFVTGGTGFMGKVLVEKLL 47
          VFVTG TGF+G  +V +L+
Sbjct: 3  VFVTGATGFIGSAVVRELV 21

This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291

>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase

 Score = 37.0 bits (86), Expect = 3e-04
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 4    NNVPTISSNMPA--PSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLL--RSCPGIKNIYLL 59
             +  T+  ++P   PS    +     +VF+TG TGF+G  ++  LL  RS    K ++  
Sbjct: 947  KDAKTLVDSLPKSYPSRKELDASTPITVFLTGATGFLGSFILRDLLTRRSNSNFK-VFAH 1005

Query: 60   MRPK 63
            +R K
Sbjct: 1006 VRAK 1009

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389

>gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAPLD 81
          + VTGG GF+G  LVE+LL +     ++  L R + G D      E +   L 
Sbjct: 3  ILVTGGAGFIGSHLVERLLAAGH---DVRGLDRLRDGLDPLLSGVEFVVLDLT 52

Length = 314

>gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs

 Score = 36.5 bits (85), Expect = 4e-04
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 29 VFVTGGTGFMGKVLVEKLLR 48
          + VTGG GF+G  LV +LL 
Sbjct: 1  ILVTGGAGFIGSHLVRRLLE 20

Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200

>gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 36.1 bits (84), Expect = 6e-04
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 19  PVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQ-DINGRLAEIIN 77
            +      ++V VTGG G +G  L  ++L+     K I L  R ++    I+  L E   
Sbjct: 243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKF--NPKEIILFSRDEYKLYLIDMELREKFP 300

Query: 78  AP 79
             
Sbjct: 301 EL 302

Length = 588

>gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs

 Score = 36.1 bits (84), Expect = 6e-04
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 23 FYQNRSVFVTGGTGFMGKVLVEKLL 47
          F+Q + V VTG TGF G  L   L 
Sbjct: 1  FWQGKRVLVTGHTGFKGSWLSLWLQ 25

This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336

>gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRL 72
          + VTGGTGF+G  LV +LL+   G + I L  R +      GR+
Sbjct: 1  ILVTGGTGFIGSHLVRRLLQE--GYEVIVLGRRRRSESLNTGRI 42

This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233

>gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase

 Score = 33.8 bits (78), Expect = 0.003
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 23 FYQNRSVFVTGGTGFMGKVLV 43
          F+Q + V VTG TGF G  L 
Sbjct: 1  FWQGKKVLVTGHTGFKGSWLS 21

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349

>gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs

 Score = 33.7 bits (78), Expect = 0.004
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 26 NRSVFVTGGTGFMGKVLVEKLLRSCPG 52
           +++ VTGG G +G  LV ++L+  P 
Sbjct: 2  GKTILVTGGAGSIGSELVRQILKFGPK 28

UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287

>gnl|CDD|215370 PLN02686, PLN02686, cinnamoyl-CoA reductase

 Score = 33.6 bits (77), Expect = 0.004
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 26 NRSVFVTGGTGFMGKVLVEKLLR 48
           R V VTGG  F+G  +V++LLR
Sbjct: 53 ARLVCVTGGVSFLGLAIVDRLLR 75

Length = 367

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
PLN02996	491	fatty acyl-CoA reductase	99.25
PLN02503	605	fatty acyl-CoA reductase 2	99.18
KOG1221|consensus	467		99.17
KOG1502|consensus	327		99.11
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	98.84
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	98.84
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	98.83
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	98.83
PLN00198	338	anthocyanidin reductase; Provisional	98.74
PLN02572	442	UDP-sulfoquinovose synthase	98.74
COG3320	382	Putative dehydrogenase domain of multifunctional n	98.73
PLN02583	297	cinnamoyl-CoA reductase	98.73
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	98.71
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	98.7
CHL00194	317	ycf39 Ycf39; Provisional	98.7
PLN02206	442	UDP-glucuronate decarboxylase	98.69
PLN02214	342	cinnamoyl-CoA reductase	98.69
PLN02427	386	UDP-apiose/xylose synthase	98.68
TIGR01746	367	Thioester-redct thioester reductase domain. It has	98.67
PLN02650	351	dihydroflavonol-4-reductase	98.66
PLN02166	436	dTDP-glucose 4,6-dehydratase	98.66
PLN02653	340	GDP-mannose 4,6-dehydratase	98.65
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	98.64
PLN02695	370	GDP-D-mannose-3',5'-epimerase	98.63
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	98.62
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	98.62
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	98.61
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	98.6
PLN02896	353	cinnamyl-alcohol dehydrogenase	98.6
PLN02240	352	UDP-glucose 4-epimerase	98.59
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	98.58
PRK07523	255	gluconate 5-dehydrogenase; Provisional	98.57
PLN02686	367	cinnamoyl-CoA reductase	98.56
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	98.55
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	98.54
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	98.53
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	98.53
PRK06194	287	hypothetical protein; Provisional	98.52
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	98.51
PLN02778	298	3,5-epimerase/4-reductase	98.51
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	98.51
PRK12828	239	short chain dehydrogenase; Provisional	98.51
PRK05717	255	oxidoreductase; Validated	98.5
PRK08628	258	short chain dehydrogenase; Provisional	98.5
PRK07806	248	short chain dehydrogenase; Provisional	98.5
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	98.49
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.49
PRK12367	245	short chain dehydrogenase; Provisional	98.48
PRK07890	258	short chain dehydrogenase; Provisional	98.48
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	98.48
PRK09135	249	pteridine reductase; Provisional	98.48
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	98.48
PRK12829	264	short chain dehydrogenase; Provisional	98.47
PLN02253	280	xanthoxin dehydrogenase	98.47
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	98.47
PRK09186	256	flagellin modification protein A; Provisional	98.47
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	98.46
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	98.46
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.46
PRK06914	280	short chain dehydrogenase; Provisional	98.46
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.46
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	98.45
PRK07774	250	short chain dehydrogenase; Provisional	98.45
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	98.45
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	98.45
PRK06057	255	short chain dehydrogenase; Provisional	98.45
PRK06523	260	short chain dehydrogenase; Provisional	98.45
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	98.44
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	98.44
PLN02260	668	probable rhamnose biosynthetic enzyme	98.44
PRK08226	263	short chain dehydrogenase; Provisional	98.44
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	98.43
KOG1429|consensus	350		98.43
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	98.42
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	98.42
PRK06398	258	aldose dehydrogenase; Validated	98.42
PRK10675	338	UDP-galactose-4-epimerase; Provisional	98.41
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	98.41
PRK06138	252	short chain dehydrogenase; Provisional	98.4
PRK08589	272	short chain dehydrogenase; Validated	98.4
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	98.4
PRK08703	239	short chain dehydrogenase; Provisional	98.4
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	98.4
PRK06196	315	oxidoreductase; Provisional	98.39
PRK07067	257	sorbitol dehydrogenase; Provisional	98.39
PRK07577	234	short chain dehydrogenase; Provisional	98.39
PRK06841	255	short chain dehydrogenase; Provisional	98.39
PRK07814	263	short chain dehydrogenase; Provisional	98.39
PRK06197	306	short chain dehydrogenase; Provisional	98.38
PRK07856	252	short chain dehydrogenase; Provisional	98.38
PRK07063	260	short chain dehydrogenase; Provisional	98.38
PRK08278	273	short chain dehydrogenase; Provisional	98.37
PRK06128	300	oxidoreductase; Provisional	98.37
PRK06500	249	short chain dehydrogenase; Provisional	98.37
PRK05867	253	short chain dehydrogenase; Provisional	98.37
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	98.37
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	98.36
PRK06180	277	short chain dehydrogenase; Provisional	98.36
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.36
PRK06949	258	short chain dehydrogenase; Provisional	98.36
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.36
PRK05875	276	short chain dehydrogenase; Provisional	98.36
PRK07478	254	short chain dehydrogenase; Provisional	98.36
PRK07201	657	short chain dehydrogenase; Provisional	98.36
PRK08213	259	gluconate 5-dehydrogenase; Provisional	98.36
PRK06179	270	short chain dehydrogenase; Provisional	98.36
PRK07326	237	short chain dehydrogenase; Provisional	98.36
PRK06172	253	short chain dehydrogenase; Provisional	98.35
PRK09072	263	short chain dehydrogenase; Provisional	98.35
PRK08265	261	short chain dehydrogenase; Provisional	98.35
PRK12320	699	hypothetical protein; Provisional	98.35
PLN03209	576	translocon at the inner envelope of chloroplast su	98.35
PRK07060	245	short chain dehydrogenase; Provisional	98.34
PRK07062	265	short chain dehydrogenase; Provisional	98.34
PRK09291	257	short chain dehydrogenase; Provisional	98.34
PLN00016	378	RNA-binding protein; Provisional	98.34
PRK06701	290	short chain dehydrogenase; Provisional	98.34
PRK07035	252	short chain dehydrogenase; Provisional	98.34
COG0300	265	DltE Short-chain dehydrogenases of various substra	98.34
PRK06182	273	short chain dehydrogenase; Validated	98.34
PRK07102	243	short chain dehydrogenase; Provisional	98.33
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	98.33
PRK12827	249	short chain dehydrogenase; Provisional	98.33
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	98.33
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	98.33
PRK08263	275	short chain dehydrogenase; Provisional	98.33
PRK05876	275	short chain dehydrogenase; Provisional	98.32
PRK06114	254	short chain dehydrogenase; Provisional	98.32
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.32
PRK05866	293	short chain dehydrogenase; Provisional	98.32
PRK08085	254	gluconate 5-dehydrogenase; Provisional	98.31
PRK06482	276	short chain dehydrogenase; Provisional	98.31
PRK07985	294	oxidoreductase; Provisional	98.31
PRK07825	273	short chain dehydrogenase; Provisional	98.31
PRK08643	256	acetoin reductase; Validated	98.31
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.31
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	98.31
KOG1371|consensus	343		98.3
PRK12939	250	short chain dehydrogenase; Provisional	98.3
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	98.3
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.3
PRK05854	313	short chain dehydrogenase; Provisional	98.3
PRK08277	278	D-mannonate oxidoreductase; Provisional	98.29
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	98.29
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.29
PRK05993	277	short chain dehydrogenase; Provisional	98.28
PRK06124	256	gluconate 5-dehydrogenase; Provisional	98.28
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.28
PRK12746	254	short chain dehydrogenase; Provisional	98.28
PRK08339	263	short chain dehydrogenase; Provisional	98.28
PRK07453	322	protochlorophyllide oxidoreductase; Validated	98.28
PRK07576	264	short chain dehydrogenase; Provisional	98.28
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.28
PRK08264	238	short chain dehydrogenase; Validated	98.27
PRK12742	237	oxidoreductase; Provisional	98.27
PRK07074	257	short chain dehydrogenase; Provisional	98.27
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	98.26
PRK06101	240	short chain dehydrogenase; Provisional	98.26
PRK08251	248	short chain dehydrogenase; Provisional	98.26
PRK07023	243	short chain dehydrogenase; Provisional	98.26
PRK07904	253	short chain dehydrogenase; Provisional	98.25
PRK08177	225	short chain dehydrogenase; Provisional	98.25
PRK07454	241	short chain dehydrogenase; Provisional	98.25
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	98.24
PRK12747	252	short chain dehydrogenase; Provisional	98.24
PRK08219	227	short chain dehydrogenase; Provisional	98.24
PRK12937	245	short chain dehydrogenase; Provisional	98.24
PRK10538	248	malonic semialdehyde reductase; Provisional	98.24
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	98.23
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	98.23
PRK06924	251	short chain dehydrogenase; Provisional	98.23
PRK08267	260	short chain dehydrogenase; Provisional	98.23
PRK06483	236	dihydromonapterin reductase; Provisional	98.23
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	98.23
PRK07024	257	short chain dehydrogenase; Provisional	98.22
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	98.22
PRK08017	256	oxidoreductase; Provisional	98.22
PRK12744	257	short chain dehydrogenase; Provisional	98.21
PRK09134	258	short chain dehydrogenase; Provisional	98.21
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	98.21
PRK07775	274	short chain dehydrogenase; Provisional	98.21
PRK08936	261	glucose-1-dehydrogenase; Provisional	98.2
PRK05693	274	short chain dehydrogenase; Provisional	98.19
PRK09242	257	tropinone reductase; Provisional	98.19
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	98.18
PRK06181	263	short chain dehydrogenase; Provisional	98.18
PRK08303	305	short chain dehydrogenase; Provisional	98.18
PRK05872	296	short chain dehydrogenase; Provisional	98.17
PLN02780	320	ketoreductase/ oxidoreductase	98.17
PRK12935	247	acetoacetyl-CoA reductase; Provisional	98.17
PRK12938	246	acetyacetyl-CoA reductase; Provisional	98.17
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.16
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	98.16
PRK07097	265	gluconate 5-dehydrogenase; Provisional	98.15
PRK06198	260	short chain dehydrogenase; Provisional	98.15
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	98.14
PRK07109	334	short chain dehydrogenase; Provisional	98.14
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.14
PRK07677	252	short chain dehydrogenase; Provisional	98.13
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	98.12
PRK12743	256	oxidoreductase; Provisional	98.12
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	98.11
KOG1430|consensus	361		98.1
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	98.09
PRK06139	330	short chain dehydrogenase; Provisional	98.09
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	98.08
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	98.08
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	98.07
PRK06953	222	short chain dehydrogenase; Provisional	98.07
PRK06125	259	short chain dehydrogenase; Provisional	98.07
KOG1205|consensus	282		98.07
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	98.06
PRK05650	270	short chain dehydrogenase; Provisional	98.05
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	98.05
PRK07791	286	short chain dehydrogenase; Provisional	98.05
PRK09620	229	hypothetical protein; Provisional	98.04
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	98.04
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	98.03
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	98.03
PRK08340	259	glucose-1-dehydrogenase; Provisional	98.03
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	98.03
PRK06720	169	hypothetical protein; Provisional	98.03
PRK12824	245	acetoacetyl-CoA reductase; Provisional	98.03
PRK05865	854	hypothetical protein; Provisional	98.02
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	98.02
PRK07831	262	short chain dehydrogenase; Provisional	98.01
PRK07832	272	short chain dehydrogenase; Provisional	98.01
PRK07201	657	short chain dehydrogenase; Provisional	98.01
PRK09009	235	C factor cell-cell signaling protein; Provisional	98.01
PRK06123	248	short chain dehydrogenase; Provisional	98.0
PLN02260	668	probable rhamnose biosynthetic enzyme	98.0
PRK08862	227	short chain dehydrogenase; Provisional	98.0
PRK05884	223	short chain dehydrogenase; Provisional	97.99
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.99
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	97.98
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	97.97
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	97.97
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	97.97
TIGR02415	254	23BDH acetoin reductases. One member of this famil	97.97
PRK07578	199	short chain dehydrogenase; Provisional	97.96
PRK05855	582	short chain dehydrogenase; Validated	97.96
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	97.96
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.96
PRK06484	520	short chain dehydrogenase; Validated	97.95
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	97.95
PRK14982	340	acyl-ACP reductase; Provisional	97.94
PRK06947	248	glucose-1-dehydrogenase; Provisional	97.94
PRK07069	251	short chain dehydrogenase; Validated	97.94
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	97.93
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	97.93
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	97.93
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	97.92
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.92
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	97.92
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	97.92
COG1028	251	FabG Dehydrogenases with different specificities (	97.91
PRK08324	681	short chain dehydrogenase; Validated	97.9
PRK06484	520	short chain dehydrogenase; Validated	97.88
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	97.82
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	97.82
COG2910	211	Putative NADH-flavin reductase [General function p	97.82
KOG0725|consensus	270		97.81
COG1089	345	Gmd GDP-D-mannose dehydratase [Cell envelope bioge	97.8
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	97.79
KOG1431|consensus	315		97.77
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	97.77
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.77
PRK08309	177	short chain dehydrogenase; Provisional	97.73
PRK07041	230	short chain dehydrogenase; Provisional	97.67
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.65
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	97.64
PRK05599	246	hypothetical protein; Provisional	97.62
KOG1372|consensus	376		97.58
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	97.57
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	97.57
KOG1208|consensus	314		97.56
KOG1201|consensus	300		97.55
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	97.52
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	97.49
KOG4169|consensus	261		97.48
PRK06940	275	short chain dehydrogenase; Provisional	97.48
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.47
KOG1014|consensus	312		97.4
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	97.29
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.24
KOG1207|consensus	245		97.21
PLN00015	308	protochlorophyllide reductase	97.14
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	97.13
KOG1203|consensus	411		97.12
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	97.08
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	97.04
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.95
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.93
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	96.92
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	96.89
PLN02383	344	aspartate semialdehyde dehydrogenase	96.83
KOG1209|consensus	289		96.74
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	96.7
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	96.64
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	96.59
KOG1611|consensus	249		96.56
KOG4039|consensus	238		96.55
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.53
KOG1200|consensus	256		96.51
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	96.51
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.44
KOG1478|consensus	341		96.44
KOG0747|consensus	331		96.41
KOG2865|consensus	391		96.4
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.39
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	96.37
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	96.35
PRK05086	312	malate dehydrogenase; Provisional	96.3
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.3
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	96.25
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.22
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.2
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.19
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.15
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	96.09
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.06
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.05
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.05
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.05
PRK08655	437	prephenate dehydrogenase; Provisional	96.04
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	95.91
PRK06849	389	hypothetical protein; Provisional	95.89
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	95.89
KOG1210|consensus	331		95.88
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	95.85
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	95.84
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.79
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.75
PTZ00325	321	malate dehydrogenase; Provisional	95.74
PLN00106	323	malate dehydrogenase	95.72
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	95.7
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.61
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	95.6
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.54
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	95.51
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.49
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.48
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	95.47
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.47
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	95.47
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.39
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	95.38
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.33
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.31
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.27
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	95.25
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	95.17
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.16
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.15
PRK09496	453	trkA potassium transporter peripheral membrane com	95.13
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	95.12
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	95.1
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.1
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	95.09
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.04
PRK00048	257	dihydrodipicolinate reductase; Provisional	95.03
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	95.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.0
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.99
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	94.98
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	94.95
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	94.95
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	94.93
PRK06444	197	prephenate dehydrogenase; Provisional	94.91
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	94.84
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	94.75
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	94.71
PRK05442	326	malate dehydrogenase; Provisional	94.7
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	94.63
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	94.61
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	94.51
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.48
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.46
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	94.46
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	94.46
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	94.43
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	94.42
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	94.41
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.34
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	94.33
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	94.31
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	94.3
PRK08328	231	hypothetical protein; Provisional	94.29
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.25
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	94.22
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	94.19
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	94.17
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.17
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	94.09
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	94.08
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.08
PRK13243	333	glyoxylate reductase; Reviewed	94.08
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	94.07
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.02
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	93.98
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.95
KOG1199|consensus	260		93.94
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	93.93
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	93.92
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	93.9
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	93.87
KOG1198|consensus	347		93.84
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.83
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	93.81
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	93.8
PRK08818	370	prephenate dehydrogenase; Provisional	93.8
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	93.76
PRK08223	287	hypothetical protein; Validated	93.75
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	93.72
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	93.66
TIGR00243	389	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	93.66
KOG1610|consensus	322		93.62
PLN02256	304	arogenate dehydrogenase	93.54
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	93.52
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.49
PRK08306	296	dipicolinate synthase subunit A; Reviewed	93.46
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	93.46
PRK06153	393	hypothetical protein; Provisional	93.43
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	93.32
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	93.31
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.3
PRK13940	414	glutamyl-tRNA reductase; Provisional	93.24
PRK07417	279	arogenate dehydrogenase; Reviewed	93.24
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.24
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	93.23
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	93.21
PRK15116	268	sulfur acceptor protein CsdL; Provisional	93.2
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	93.19
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	93.16
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	93.13
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	93.11
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	93.1
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.08
PRK14031	444	glutamate dehydrogenase; Provisional	93.05
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	93.03
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	93.02
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	92.99
PRK12480	330	D-lactate dehydrogenase; Provisional	92.97
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	92.96
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	92.9
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	92.84
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.78
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	92.76
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	92.75
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	92.74
PTZ00117	319	malate dehydrogenase; Provisional	92.73
PRK09496	453	trkA potassium transporter peripheral membrane com	92.72
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.72
KOG4288|consensus	283		92.71
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.71
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	92.65
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	92.6
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	92.59
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.57
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	92.56
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	92.54
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	92.53
COG0743	385	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	92.52
PRK13771	334	putative alcohol dehydrogenase; Provisional	92.5
PLN02696	454	1-deoxy-D-xylulose-5-phosphate reductoisomerase	92.49
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.46
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	92.46
PRK06223	307	malate dehydrogenase; Reviewed	92.45
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.43
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.41
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	92.38
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	92.36
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	92.33
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.33
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.33
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.32
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	92.19
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	92.18
TIGR00036	266	dapB dihydrodipicolinate reductase.	92.18
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.12
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	92.11
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	92.11
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	92.09
COG0569	225	TrkA K+ transport systems, NAD-binding component [	92.09
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	92.05
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	92.04
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	92.03
PLN00203	519	glutamyl-tRNA reductase	92.02
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	91.99
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	91.98
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	91.95
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.94
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	91.91
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	91.91
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	91.89
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	91.89
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	91.85
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	91.84
PLN02928	347	oxidoreductase family protein	91.83
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	91.82

>PLN02996 fatty acyl-CoA reductase

Probab=99.25  E-value=2.8e-11  Score=87.22  Aligned_cols=55  Identities=40%  Similarity=0.806  Sum_probs=48.8

Q ss_pred             ChhhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCccHHHHHH
Q psy16528         19 PVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLA   73 (82)
Q Consensus        19 ~~~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~~~~~~~   73 (82)
                      .+.+++++++|+|||||||+|+++++.|++.+.++.+|+++.|........+++.
T Consensus         4 ~i~~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~   58 (491)
T PLN02996          4 SCVQFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLH   58 (491)
T ss_pred             cHHHHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHH
Confidence            4667899999999999999999999999998778889999999888777777764

>PLN02503 fatty acyl-CoA reductase 2

Probab=99.18  E-value=5.8e-11  Score=87.56  Aligned_cols=54  Identities=41%  Similarity=0.801  Sum_probs=48.2

Q ss_pred             hhhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCccHHHHHH
Q psy16528         20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLA   73 (82)
Q Consensus        20 ~~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~~~~~~~   73 (82)
                      +.+++++++|+|||||||+|++++++|++.++++.+|+++.|........+++.
T Consensus       113 I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~  166 (605)
T PLN02503        113 IAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLK  166 (605)
T ss_pred             hhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHH
Confidence            467899999999999999999999999998888889999999888777777774

>KOG1221|consensus

Probab=99.17  E-value=7.4e-11  Score=84.62  Aligned_cols=60  Identities=52%  Similarity=0.996  Sum_probs=55.5

Q ss_pred             hhhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCccHHHHHHHHHhCC
Q psy16528         20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAP   79 (82)
Q Consensus        20 ~~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~~~~~~~~~~~~~   79 (82)
                      ..+++++|+|+|||||||+|+.+++.|++..+++..||.+.|........+|+..++.++
T Consensus         6 i~~f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~   65 (467)
T KOG1221|consen    6 IVQFYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDP   65 (467)
T ss_pred             HHHHhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhh
Confidence            667899999999999999999999999999889999999999999999999998887764

>KOG1502|consensus

Probab=99.11  E-value=1.9e-10  Score=79.51  Aligned_cols=47  Identities=26%  Similarity=0.403  Sum_probs=40.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCccHHHHHHH
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAE   74 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~~~~~~~~   74 (82)
                      .+++|+||||+||||++|+++|+++||   .|++..|++.+....+.+.+
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY---~V~gtVR~~~~~k~~~~L~~   51 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY---TVRGTVRDPEDEKKTEHLRK   51 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC---EEEEEEcCcchhhhHHHHHh
Confidence            568999999999999999999999999   99999999887555444444

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=98.84  E-value=4.3e-09  Score=69.54  Aligned_cols=44  Identities=43%  Similarity=0.735  Sum_probs=34.5

Q ss_pred             EEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCccHHHHHHHH
Q psy16528         31 VTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEI   75 (82)
Q Consensus        31 ItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~~~~~~~~~   75 (82)
                      |||||||+|++++++|++++..+ +|+|+.|..+.....+++.+.
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~-~I~cLvR~~~~~~~~~rl~~~   44 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDV-KIYCLVRASSSQSALERLKDA   44 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TT-EEEEEE-SSSHHHHHHHHHGG
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCc-EEEEEEeCcccccchhhhhhh
Confidence            79999999999999999997545 999999987766667776443

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=98.84  E-value=7e-09  Score=71.37  Aligned_cols=37  Identities=27%  Similarity=0.336  Sum_probs=33.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++|+||||+||||++++++|+++|+   +|++++|..
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~---~V~~~d~~~   49 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQ---TVIGLDNFS   49 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEeCCC
Confidence            6779999999999999999999999987   788888743

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=98.83  E-value=9.8e-09  Score=69.21  Aligned_cols=37  Identities=27%  Similarity=0.442  Sum_probs=33.1

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++++|+||||+||||++++++|+++|+   .|++++|+..
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~---~V~~~~r~~~   39 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGY---TVKATVRDPN   39 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCC---EEEEEEcCCC
Confidence            468999999999999999999999988   8888888654

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=98.83  E-value=8.3e-09  Score=70.82  Aligned_cols=38  Identities=34%  Similarity=0.422  Sum_probs=34.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+|+||||+||||+++++.|+++|+   .|++++|...
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~---~V~~~~r~~~   39 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGA---EVYGYSLDPP   39 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCC---EEEEEeCCCc
Confidence            5789999999999999999999999988   7888888654

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN00198 anthocyanidin reductase; Provisional

Probab=98.74  E-value=2.2e-08  Score=68.28  Aligned_cols=38  Identities=26%  Similarity=0.471  Sum_probs=33.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++|+||||+||||++++++|+++|+   +|+++.|+..
T Consensus         7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~---~V~~~~r~~~   44 (338)
T PLN00198          7 TGKKTACVIGGTGFLASLLIKLLLQKGY---AVNTTVRDPE   44 (338)
T ss_pred             CCCCeEEEECCchHHHHHHHHHHHHCCC---EEEEEECCCC
Confidence            5578999999999999999999999987   7877777643

>PLN02572 UDP-sulfoquinovose synthase

Probab=98.74  E-value=1.8e-08  Score=71.85  Aligned_cols=38  Identities=21%  Similarity=0.330  Sum_probs=32.6

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +..+++++|+||||+||||++++++|+++|+   .|++++|
T Consensus        42 ~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~---~V~~~d~   79 (442)
T PLN02572         42 SSSSKKKKVMVIGGDGYCGWATALHLSKRGY---EVAIVDN   79 (442)
T ss_pred             CccccCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEec
Confidence            3447889999999999999999999999988   6777653

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.73  E-value=2.2e-08  Score=70.34  Aligned_cols=49  Identities=31%  Similarity=0.554  Sum_probs=42.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCccHHHHHHHHHh
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIIN   77 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~~~~~~~~~~~   77 (82)
                      +++++||||||+|.+++..|+.+-.  .+|+|++|..+++...+|+++.++
T Consensus         1 ~~vlLTGATGFLG~yLl~eLL~~~~--~kv~cLVRA~s~E~a~~RL~~~~~   49 (382)
T COG3320           1 RNVLLTGATGFLGAYLLLELLDRSD--AKVICLVRAQSDEAALARLEKTFD   49 (382)
T ss_pred             CeEEEecCchHhHHHHHHHHHhcCC--CcEEEEEecCCHHHHHHHHHHHhh
Confidence            4799999999999999999999843  599999999988888888877766

>PLN02583 cinnamoyl-CoA reductase

Probab=98.73  E-value=3.5e-08  Score=66.62  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=31.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+||||+||||++++++|+++|+   .|+++.|+.
T Consensus         6 ~k~vlVTGatG~IG~~lv~~Ll~~G~---~V~~~~R~~   40 (297)
T PLN02583          6 SKSVCVMDASGYVGFWLVKRLLSRGY---TVHAAVQKN   40 (297)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEEcCc
Confidence            57899999999999999999999998   888888853

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=98.71  E-value=5.4e-08  Score=65.94  Aligned_cols=38  Identities=24%  Similarity=0.329  Sum_probs=33.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      .+++|+||||+||||++++++|+++|+   .|+++.|+...
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~   41 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGY---TVKATVRDLTD   41 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEECCCcc
Confidence            468999999999999999999999988   78888886543

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=98.70  E-value=2.8e-08  Score=67.97  Aligned_cols=35  Identities=31%  Similarity=0.337  Sum_probs=31.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+|+||||+||||++++++|++.|+   +|++++|...
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~---~V~~~~r~~~   35 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY---EVHGLIRRSS   35 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC---EEEEEecCCc
Confidence            5899999999999999999999988   7888888643

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>CHL00194 ycf39 Ycf39; Provisional

Probab=98.70  E-value=3e-08  Score=67.42  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=31.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|+|||||||+|++++++|+++|+   +|++++|+.
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~---~V~~l~R~~   34 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY---QVRCLVRNL   34 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC---eEEEEEcCh
Confidence            4799999999999999999999988   899999974

>PLN02206 UDP-glucuronate decarboxylase

Probab=98.69  E-value=3e-08  Score=70.87  Aligned_cols=36  Identities=31%  Similarity=0.531  Sum_probs=32.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .++|+|+||||+||||+++++.|+++|+   +|++++|.
T Consensus       117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~---~V~~ld~~  152 (442)
T PLN02206        117 RKGLRVVVTGGAGFVGSHLVDRLMARGD---SVIVVDNF  152 (442)
T ss_pred             cCCCEEEEECcccHHHHHHHHHHHHCcC---EEEEEeCC
Confidence            4679999999999999999999999988   78888764

>PLN02214 cinnamoyl-CoA reductase

Probab=98.69  E-value=4.5e-08  Score=67.39  Aligned_cols=38  Identities=24%  Similarity=0.329  Sum_probs=33.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++++|+||||+||||++++++|+++|+   .|+++.|+..
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~---~V~~~~r~~~   45 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGY---TVKGTVRNPD   45 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC---EEEEEeCCch
Confidence            4678999999999999999999999988   8888888644

>PLN02427 UDP-apiose/xylose synthase

Probab=98.68  E-value=3.4e-08  Score=68.65  Aligned_cols=37  Identities=24%  Similarity=0.404  Sum_probs=31.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhC-CCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSC-PGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g-~~~~~V~~l~r~~   63 (82)
                      .+.|+|+||||+||||++++++|++++ +   +|++++|..
T Consensus        12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~---~V~~l~r~~   49 (386)
T PLN02427         12 IKPLTICMIGAGGFIGSHLCEKLMTETPH---KVLALDVYN   49 (386)
T ss_pred             ccCcEEEEECCcchHHHHHHHHHHhcCCC---EEEEEecCc
Confidence            456789999999999999999999984 6   788888753

>TIGR01746 Thioester-redct thioester reductase domain

Probab=98.67  E-value=4.9e-08  Score=66.12  Aligned_cols=38  Identities=37%  Similarity=0.670  Sum_probs=31.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCc
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQ   66 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~   66 (82)
                      +|+|||||||+|++++++|+++|+.. .|+++.|+....
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~-~V~~l~R~~~~~   38 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQA-KVICLVRAASEE   38 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCC-EEEEEEccCCHH
Confidence            48999999999999999999997322 799999976543

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PLN02650 dihydroflavonol-4-reductase

Probab=98.66  E-value=6e-08  Score=66.54  Aligned_cols=36  Identities=33%  Similarity=0.507  Sum_probs=31.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++||||||+||||++++++|+++|+   .|+++.|+..
T Consensus         5 ~k~iLVTGatGfIGs~l~~~L~~~G~---~V~~~~r~~~   40 (351)
T PLN02650          5 KETVCVTGASGFIGSWLVMRLLERGY---TVRATVRDPA   40 (351)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHCCC---EEEEEEcCcc
Confidence            47899999999999999999999988   8888888643

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=98.66  E-value=4.6e-08  Score=69.80  Aligned_cols=35  Identities=31%  Similarity=0.570  Sum_probs=31.6

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +.++|+||||+||||++++++|+++|+   +|++++|.
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~---~V~~ldr~  153 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGRGD---EVIVIDNF  153 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEeCC
Confidence            357999999999999999999999988   78888875

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=98.65  E-value=5.1e-08  Score=66.57  Aligned_cols=37  Identities=27%  Similarity=0.284  Sum_probs=32.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++++|+||||+||||++++++|+++|+   +|++++|..
T Consensus         4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~---~V~~~~r~~   40 (340)
T PLN02653          4 PPRKVALITGITGQDGSYLTEFLLSKGY---EVHGIIRRS   40 (340)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC---EEEEEeccc
Confidence            4578999999999999999999999988   788887754

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=98.64  E-value=9.1e-08  Score=63.59  Aligned_cols=47  Identities=19%  Similarity=0.326  Sum_probs=38.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCccHHHHHHHHHh
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIIN   77 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~~~~~~~~~~~   77 (82)
                      +|+||||+||+|++++++|+++|+   +|++++|...+....+.+.+.++
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~---~v~~~~r~~~d~~~~~~~~~~~~   47 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR---VVVALTSSQLDLTDPEALERLLR   47 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC---EEEEeCCcccCCCCHHHHHHHHH
Confidence            489999999999999999999988   88999887555555556665554

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=98.63  E-value=6.6e-08  Score=67.35  Aligned_cols=35  Identities=17%  Similarity=0.254  Sum_probs=32.0

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++|+|+||||+||||+++++.|.+.|+   +|++++|.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~---~V~~v~r~   54 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGH---YIIASDWK   54 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCC---EEEEEEec
Confidence            578999999999999999999999988   78888874

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.62  E-value=7e-08  Score=64.39  Aligned_cols=34  Identities=41%  Similarity=0.687  Sum_probs=30.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .|+||||+||||+++++.|+++|+   .|+.++|...
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~~~g~---~V~~~~r~~~   35 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAAGH---DVRGLDRLRD   35 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHHhCCC---eEEEEeCCCc
Confidence            499999999999999999999988   8999998654

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=98.62  E-value=1.2e-07  Score=64.27  Aligned_cols=36  Identities=28%  Similarity=0.394  Sum_probs=31.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +|+++||||+||||++++++|+++|+   .|++++|+..
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~---~V~~~~r~~~   40 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGY---TINATVRDPK   40 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC---EEEEEEcCCc
Confidence            68999999999999999999999988   7777777654

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=98.61  E-value=7.3e-08  Score=71.54  Aligned_cols=39  Identities=31%  Similarity=0.452  Sum_probs=33.7

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEeCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRS-CPGIKNIYLLMRPK   63 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~-g~~~~~V~~l~r~~   63 (82)
                      .++++++|+||||+||||++++++|+++ |+   +|++++|..
T Consensus       311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~---~V~~l~r~~  350 (660)
T PRK08125        311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNY---EVYGLDIGS  350 (660)
T ss_pred             hhhcCCEEEEECCCchHHHHHHHHHHhCCCc---EEEEEeCCc
Confidence            3467899999999999999999999986 56   888888854

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=98.60  E-value=9.3e-08  Score=62.73  Aligned_cols=38  Identities=18%  Similarity=0.281  Sum_probs=33.8

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++++++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~---~v~~~~r~~   42 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGA---RVVLVDRSE   42 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCch
Confidence            36789999999999999999999999988   788888863

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=98.60  E-value=9.3e-08  Score=65.74  Aligned_cols=36  Identities=31%  Similarity=0.450  Sum_probs=32.1

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|+||||+||||++++++|+++|+   .|++++|+.
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~---~V~~~~r~~   44 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGY---TVHATLRDP   44 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCh
Confidence            568999999999999999999999987   788888754

>PLN02240 UDP-glucose 4-epimerase

Probab=98.59  E-value=1.1e-07  Score=64.82  Aligned_cols=36  Identities=28%  Similarity=0.504  Sum_probs=32.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++++|+||||+||+|++++++|+++|+   .|++++|.
T Consensus         3 ~~~~~vlItGatG~iG~~l~~~L~~~g~---~V~~~~~~   38 (352)
T PLN02240          3 LMGRTILVTGGAGYIGSHTVLQLLLAGY---KVVVIDNL   38 (352)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCC
Confidence            5678999999999999999999999987   78888764

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=98.58  E-value=1.8e-07  Score=60.12  Aligned_cols=35  Identities=34%  Similarity=0.728  Sum_probs=31.0

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCc
Q psy16528         29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQ   66 (82)
Q Consensus        29 ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~   66 (82)
                      |+||||+||+|++++++|+++|+   .|+.+.|.....
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~---~v~~~~~~~~~~   35 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGH---EVIVLSRSSNSE   35 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTT---EEEEEESCSTGG
T ss_pred             EEEEccCCHHHHHHHHHHHHcCC---cccccccccccc
Confidence            79999999999999999999988   778888876654

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=98.57  E-value=1.7e-07  Score=61.39  Aligned_cols=37  Identities=27%  Similarity=0.333  Sum_probs=33.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|++
T Consensus         8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~---~V~~~~r~~   44 (255)
T PRK07523          8 LTGRRALVTGSSQGIGYALAEGLAQAGA---EVILNGRDP   44 (255)
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            6789999999999999999999999988   788888864

>PLN02686 cinnamoyl-CoA reductase

Probab=98.56  E-value=1.3e-07  Score=65.86  Aligned_cols=37  Identities=32%  Similarity=0.577  Sum_probs=32.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+|+||||+||||++++++|+++|+   .|+++.|+.
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~---~V~~~~r~~   87 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRLLRHGY---SVRIAVDTQ   87 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6689999999999999999999999988   777777753

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=98.55  E-value=1.2e-07  Score=62.84  Aligned_cols=34  Identities=32%  Similarity=0.738  Sum_probs=30.8

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        29 ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      |+||||+||||+++++.|+++|+   +|++++|++..
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~   34 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH---EVTILTRSPPA   34 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC---EEEEEeCCCCC
Confidence            68999999999999999999987   89999997654

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=98.54  E-value=1.6e-07  Score=64.22  Aligned_cols=39  Identities=36%  Similarity=0.713  Sum_probs=32.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++|+||||+||||++++++|+++|. ...|++++|+.
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~-~~~V~~~~r~~   40 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYN-PKKIIIYSRDE   40 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCC-CcEEEEEcCCh
Confidence            5689999999999999999999999862 12688888754

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=98.53  E-value=2.7e-07  Score=62.47  Aligned_cols=47  Identities=21%  Similarity=0.176  Sum_probs=34.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC----CccHHHHHHHHHh
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH----GQDINGRLAEIIN   77 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~----~~~~~~~~~~~~~   77 (82)
                      |+||||||+||||++++++|++.|    .|++++|...    +....+.+.++++
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g----~V~~~~~~~~~~~~Dl~d~~~~~~~~~   51 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG----NLIALDVHSTDYCGDFSNPEGVAETVR   51 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC----CEEEeccccccccCCCCCHHHHHHHHH
Confidence            479999999999999999999986    3677777531    3333445555554

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=98.53  E-value=1.6e-07  Score=64.40  Aligned_cols=33  Identities=24%  Similarity=0.484  Sum_probs=29.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRS-CPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~-g~~~~~V~~l~r~   62 (82)
                      |+|+||||+||||++++++|++. ++   .|++++|.
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~---~V~~~~r~   35 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDW---EVYGMDMQ   35 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCC---eEEEEeCc
Confidence            57999999999999999999986 46   78888875

>PRK06194 hypothetical protein; Provisional

Probab=98.52  E-value=1.9e-07  Score=62.08  Aligned_cols=37  Identities=11%  Similarity=0.103  Sum_probs=32.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||++++++|+++|+   .|++++|..
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~G~---~V~~~~r~~   40 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAALGM---KLVLADVQQ   40 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCC---EEEEEeCCh
Confidence            4578999999999999999999999987   788888753

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=98.51  E-value=2e-07  Score=60.75  Aligned_cols=38  Identities=13%  Similarity=0.199  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||+|++|++++++|+++|+   .|++++|++.
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~---~v~~~~r~~~   39 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGA---KVVIADLNDE   39 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCCHH
Confidence            4578999999999999999999999988   8888888654

>PLN02778 3,5-epimerase/4-reductase

Probab=98.51  E-value=3.4e-07  Score=62.13  Aligned_cols=32  Identities=16%  Similarity=0.185  Sum_probs=27.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      .|+||||||+||||++++++|+++|+   .|+...
T Consensus         9 ~~kiLVtG~tGfiG~~l~~~L~~~g~---~V~~~~   40 (298)
T PLN02778          9 TLKFLIYGKTGWIGGLLGKLCQEQGI---DFHYGS   40 (298)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCC---EEEEec
Confidence            37899999999999999999999988   555443

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=98.51  E-value=2.2e-07  Score=58.17  Aligned_cols=33  Identities=36%  Similarity=0.682  Sum_probs=30.9

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        29 ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+|+||||++|++++++|+++++   +|+++.|++.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~---~V~~~~R~~~   33 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH---EVTALVRSPS   33 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS---EEEEEESSGG
T ss_pred             eEEECCCChHHHHHHHHHHHCCC---EEEEEecCch
Confidence            78999999999999999999987   9999999865

...

>PRK12828 short chain dehydrogenase; Provisional

Probab=98.51  E-value=2e-07  Score=59.94  Aligned_cols=37  Identities=27%  Similarity=0.352  Sum_probs=33.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus         5 ~~~k~vlItGatg~iG~~la~~l~~~G~---~v~~~~r~~   41 (239)
T PRK12828          5 LQGKVVAITGGFGGLGRATAAWLAARGA---RVALIGRGA   41 (239)
T ss_pred             CCCCEEEEECCCCcHhHHHHHHHHHCCC---eEEEEeCCh
Confidence            5689999999999999999999999988   789998864

>PRK05717 oxidoreductase; Validated

Probab=98.50  E-value=2.8e-07  Score=60.45  Aligned_cols=38  Identities=18%  Similarity=0.105  Sum_probs=33.3

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|+++||||+|+||+++++.|+++|+   .|++++|+.
T Consensus         7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~---~v~~~~~~~   44 (255)
T PRK05717          7 GHNGRVALVTGAARGIGLGIAAWLIAEGW---QVVLADLDR   44 (255)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHHHHcCC---EEEEEcCCH
Confidence            36789999999999999999999999987   777777653

>PRK08628 short chain dehydrogenase; Provisional

Probab=98.50  E-value=3.1e-07  Score=60.17  Aligned_cols=39  Identities=21%  Similarity=0.304  Sum_probs=34.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +++++++||||+|+||++++++|+++|.   .|++++|++..
T Consensus         5 l~~~~ilItGasggiG~~la~~l~~~G~---~v~~~~r~~~~   43 (258)
T PRK08628          5 LKDKVVIVTGGASGIGAAISLRLAEEGA---IPVIFGRSAPD   43 (258)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHcCC---cEEEEcCChhh
Confidence            6789999999999999999999999987   67778886543

>PRK07806 short chain dehydrogenase; Provisional

Probab=98.50  E-value=2.8e-07  Score=59.98  Aligned_cols=37  Identities=19%  Similarity=0.264  Sum_probs=32.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~---~V~~~~r~~   40 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGA---HVVVNYRQK   40 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            4678999999999999999999999988   788888854

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=98.49  E-value=1.6e-07  Score=63.95  Aligned_cols=34  Identities=29%  Similarity=0.633  Sum_probs=31.4

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        29 ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      |+|||||||||++++..|.+.|+   .|+.++|++..
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh---~v~iltR~~~~   34 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGH---QVTILTRRPPK   34 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCC---eEEEEEcCCcc
Confidence            68999999999999999999999   99999998654

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.49  E-value=2.9e-07  Score=59.78  Aligned_cols=38  Identities=13%  Similarity=0.278  Sum_probs=34.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||+|+||.+++++|+++|+   .|+.++|+..
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~---~V~~~~r~~~   40 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGA---RVVVTDRNEE   40 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            5678999999999999999999999988   7899998753

>PRK12367 short chain dehydrogenase; Provisional

Probab=98.48  E-value=4.6e-07  Score=60.03  Aligned_cols=40  Identities=23%  Similarity=0.383  Sum_probs=34.9

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +..+++++++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         9 ~~~l~~k~~lITGas~gIG~ala~~l~~~G~---~Vi~~~r~~   48 (245)
T PRK12367          9 QSTWQGKRIGITGASGALGKALTKAFRAKGA---KVIGLTHSK   48 (245)
T ss_pred             HHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC---EEEEEECCc
Confidence            3447789999999999999999999999988   788888864

>PRK07890 short chain dehydrogenase; Provisional

Probab=98.48  E-value=2.8e-07  Score=60.26  Aligned_cols=38  Identities=21%  Similarity=0.328  Sum_probs=33.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||+|+||++++++|+++|+   .|++++|++.
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~---~V~~~~r~~~   40 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGA---DVVLAARTAE   40 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence            5679999999999999999999999988   7888888653

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=98.48  E-value=3e-07  Score=59.57  Aligned_cols=37  Identities=16%  Similarity=0.265  Sum_probs=33.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|++|.+++++|+++|+   .|++++|+.
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~---~V~~~~r~~   40 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGA---EVIVVDICG   40 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            4578999999999999999999999987   889999874

>PRK09135 pteridine reductase; Provisional

Probab=98.48  E-value=3.5e-07  Score=59.20  Aligned_cols=37  Identities=14%  Similarity=0.249  Sum_probs=32.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++++++||||+|+||++++++|++.|+   .|++++|..
T Consensus         4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~---~v~~~~r~~   40 (249)
T PRK09135          4 DSAKVALITGGARRIGAAIARTLHAAGY---RVAIHYHRS   40 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCC
Confidence            3468999999999999999999999987   888888753

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=98.48  E-value=3.2e-07  Score=59.70  Aligned_cols=37  Identities=19%  Similarity=0.232  Sum_probs=33.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||.+++++|+++|+   .|+.+.|+.
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~vi~~~r~~   39 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGA---DIVGAGRSE   39 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCch
Confidence            5789999999999999999999999988   788888754

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK12829 short chain dehydrogenase; Provisional

Probab=98.47  E-value=2.9e-07  Score=60.25  Aligned_cols=39  Identities=18%  Similarity=0.269  Sum_probs=34.5

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+++++++||||+|+||++++++|+++|+   .|+++.|+..
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~---~V~~~~r~~~   46 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGA---RVHVCDVSEA   46 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            36789999999999999999999999988   7888888643

>PLN02253 xanthoxin dehydrogenase

Probab=98.47  E-value=4e-07  Score=60.46  Aligned_cols=37  Identities=16%  Similarity=0.306  Sum_probs=32.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|++.|+   .|+.++|..
T Consensus        16 l~~k~~lItGas~gIG~~la~~l~~~G~---~v~~~~~~~   52 (280)
T PLN02253         16 LLGKVALVTGGATGIGESIVRLFHKHGA---KVCIVDLQD   52 (280)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            6789999999999999999999999988   778777753

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=98.47  E-value=3.1e-07  Score=64.61  Aligned_cols=38  Identities=34%  Similarity=0.593  Sum_probs=34.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++++|+||||+||||++++++|+++|+   .|++++|+..
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~---~V~~l~R~~~   95 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGY---NVVAVAREKS   95 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEEechh
Confidence            4578999999999999999999999988   8899998653

>PRK09186 flagellin modification protein A; Provisional

Probab=98.47  E-value=3.2e-07  Score=59.89  Aligned_cols=38  Identities=21%  Similarity=0.425  Sum_probs=33.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+++||||+|+||.++++.|+++|+   .|+.+.|+.+
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~---~v~~~~r~~~   39 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGG---IVIAADIDKE   39 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEecChH
Confidence            5689999999999999999999999988   7888887643

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=98.46  E-value=2.8e-07  Score=61.51  Aligned_cols=34  Identities=21%  Similarity=0.341  Sum_probs=31.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +|+||||||++|++++++|+++|+   +|++++|++.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~---~V~~~~R~~~   34 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASV---PFLVASRSSS   34 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCC---cEEEEeCCCc
Confidence            489999999999999999999987   7999999764

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=98.46  E-value=4e-07  Score=59.16  Aligned_cols=37  Identities=16%  Similarity=0.363  Sum_probs=32.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||++++++|++.|+   .|++++|+.
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~---~v~~~~r~~   37 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGA---KVAVFDLNR   37 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEecCCH
Confidence            4578999999999999999999999987   788888764

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=98.46  E-value=3.5e-07  Score=58.90  Aligned_cols=38  Identities=16%  Similarity=0.322  Sum_probs=33.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||+|++|.+++++|+++|+   .|+.++|++.
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l~~~g~---~v~~~~r~~~   40 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRLAADGA---KVVIYDSNEE   40 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCChh
Confidence            3467999999999999999999999988   7888888754

>PRK06914 short chain dehydrogenase; Provisional

Probab=98.46  E-value=4.2e-07  Score=60.26  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=32.8

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++++++||||+|++|+++++.|+++|+   .|++++|+++
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~---~V~~~~r~~~   38 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGY---LVIATMRNPE   38 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCC---EEEEEeCCHH
Confidence            467899999999999999999999988   7888888643

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=98.46  E-value=4.4e-07  Score=58.55  Aligned_cols=37  Identities=19%  Similarity=0.373  Sum_probs=32.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|++|++++++|++.|+   .|+.+.|+.
T Consensus         3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~---~v~~~~~~~   39 (248)
T PRK05557          3 LEGKVALVTGASRGIGRAIAERLAAQGA---NVVINYASS   39 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            4678999999999999999999999988   677777654

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=98.45  E-value=4.4e-07  Score=61.37  Aligned_cols=49  Identities=20%  Similarity=0.352  Sum_probs=39.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCccHHHHHHHHHhC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINA   78 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~~~~~~~~~~~~   78 (82)
                      |+||||||+|++|+++.++|.+.|+   .|++..|..-+....+.+.++++.
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~---~v~~~~r~~~dl~d~~~~~~~~~~   49 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGY---EVIATSRSDLDLTDPEAVAKLLEA   49 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSE---EEEEESTTCS-TTSHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCC---EEEEeCchhcCCCCHHHHHHHHHH
Confidence            6899999999999999999999876   788888887666666666666543

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK07774 short chain dehydrogenase; Provisional

Probab=98.45  E-value=4.2e-07  Score=59.14  Aligned_cols=38  Identities=21%  Similarity=0.380  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||+|+||.+++++|++.|+   .|++++|...
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~---~vi~~~r~~~   41 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALAREGA---SVVVADINAE   41 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            4678999999999999999999999987   7888888643

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=98.45  E-value=4.1e-07  Score=59.46  Aligned_cols=37  Identities=19%  Similarity=0.276  Sum_probs=33.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||+++++.|++.|+   .|+++.|++
T Consensus         5 ~~~~~vlItGasg~iG~~la~~l~~~G~---~v~~~~r~~   41 (262)
T PRK13394          5 LNGKTAVVTGAASGIGKEIALELARAGA---AVAIADLNQ   41 (262)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---eEEEEeCCh
Confidence            4678999999999999999999999988   788888865

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.45  E-value=2.4e-07  Score=60.81  Aligned_cols=36  Identities=31%  Similarity=0.521  Sum_probs=32.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ++|+||||||++|++++++|++.|+   .|+++.|++..
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~---~v~~~~r~~~~   36 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGH---EVRAAVRNPEA   36 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCC---EEEEEEeCHHH
Confidence            4799999999999999999999988   89999997543

>PRK06057 short chain dehydrogenase; Provisional

Probab=98.45  E-value=3.5e-07  Score=59.99  Aligned_cols=38  Identities=16%  Similarity=0.180  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||+|+||.+++++|+++|+   .|++++|+..
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~---~v~~~~r~~~   42 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGA---TVVVGDIDPE   42 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence            6789999999999999999999999988   7888888643

>PRK06523 short chain dehydrogenase; Provisional

Probab=98.45  E-value=3.9e-07  Score=59.74  Aligned_cols=37  Identities=27%  Similarity=0.436  Sum_probs=33.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||++++++|.++|+   .|++++|+.
T Consensus         7 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~v~~~~r~~   43 (260)
T PRK06523          7 LAGKRALVTGGTKGIGAATVARLLEAGA---RVVTTARSR   43 (260)
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHCCC---EEEEEeCCh
Confidence            6789999999999999999999999988   788888854

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=98.44  E-value=5.9e-07  Score=58.61  Aligned_cols=40  Identities=23%  Similarity=0.374  Sum_probs=35.3

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+++++++||||+|+||.+++++|++.|+   .|++++|+.
T Consensus         7 ~~~~~~k~vlItG~~g~iG~~la~~l~~~G~---~Vi~~~r~~   46 (247)
T PRK08945          7 PDLLKDRIILVTGAGDGIGREAALTYARHGA---TVILLGRTE   46 (247)
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCC---cEEEEeCCH
Confidence            3457899999999999999999999999987   788888864

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=98.44  E-value=5.2e-07  Score=60.70  Aligned_cols=31  Identities=32%  Similarity=0.536  Sum_probs=26.0

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        29 ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      |+||||+||||++++++|++.|+   .++++.|.
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~---~~v~~~~~   32 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGI---TDILVVDN   32 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCC---ceEEEecC
Confidence            89999999999999999999986   45555444

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=98.44  E-value=3.7e-07  Score=67.66  Aligned_cols=39  Identities=26%  Similarity=0.636  Sum_probs=32.5

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++.|+|+|||||||||++++++|++++.++ +|++++|.
T Consensus         3 ~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~-~V~~~d~~   41 (668)
T PLN02260          3 TYEPKNILITGAAGFIASHVANRLIRNYPDY-KIVVLDKL   41 (668)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHhCCCC-EEEEEeCC
Confidence            4678999999999999999999999985333 67888764

>PRK08226 short chain dehydrogenase; Provisional

Probab=98.44  E-value=4.6e-07  Score=59.50  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=33.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         4 ~~~~~~lItG~s~giG~~la~~l~~~G~---~Vv~~~r~~   40 (263)
T PRK08226          4 LTGKTALITGALQGIGEGIARVFARHGA---NLILLDISP   40 (263)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEecCCH
Confidence            5679999999999999999999999988   788888864

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=98.43  E-value=4.2e-07  Score=59.87  Aligned_cols=37  Identities=35%  Similarity=0.467  Sum_probs=32.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++++|+||||+|++|++++++|++.|+   .|+++.|+.
T Consensus        15 ~~~~~ilItGasG~iG~~l~~~L~~~g~---~V~~~~R~~   51 (251)
T PLN00141         15 VKTKTVFVAGATGRTGKRIVEQLLAKGF---AVKAGVRDV   51 (251)
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhCCC---EEEEEecCH
Confidence            3468999999999999999999999987   788888864

>KOG1429|consensus

Probab=98.43  E-value=4.2e-07  Score=62.45  Aligned_cols=36  Identities=36%  Similarity=0.600  Sum_probs=31.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ..+++|+||||.||||+|++..|..+|+   +|++++.-
T Consensus        25 ~~~lrI~itGgaGFIgSHLvdkLm~egh---~VIa~Dn~   60 (350)
T KOG1429|consen   25 SQNLRILITGGAGFIGSHLVDKLMTEGH---EVIALDNY   60 (350)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHhcCC---eEEEEecc
Confidence            3468999999999999999999999998   78887753

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=98.42  E-value=4.4e-07  Score=60.95  Aligned_cols=35  Identities=40%  Similarity=0.693  Sum_probs=31.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|+||||+||||+++++.|++.|+   .|++++|++.
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~---~V~~~~r~~~   35 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE---EVRVLVRPTS   35 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC---EEEEEEecCc
Confidence            4799999999999999999999987   8888888643

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=98.42  E-value=6.9e-07  Score=58.69  Aligned_cols=36  Identities=19%  Similarity=0.308  Sum_probs=32.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++++++||||+|+||.+++++|++.|+   .|+.+.|+
T Consensus        13 l~~k~vlItGas~gIG~~ia~~l~~~G~---~v~~~~~~   48 (258)
T PRK06935         13 LDGKVAIVTGGNTGLGQGYAVALAKAGA---DIIITTHG   48 (258)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCC
Confidence            6789999999999999999999999988   77777776

>PRK06398 aldose dehydrogenase; Validated

Probab=98.42  E-value=6.6e-07  Score=59.08  Aligned_cols=37  Identities=24%  Similarity=0.392  Sum_probs=33.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.+++++|++.|+   .|++++|+.
T Consensus         4 l~gk~vlItGas~gIG~~ia~~l~~~G~---~Vi~~~r~~   40 (258)
T PRK06398          4 LKDKVAIVTGGSQGIGKAVVNRLKEEGS---NVINFDIKE   40 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCCc
Confidence            5689999999999999999999999988   788888764

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=98.41  E-value=6.1e-07  Score=60.93  Aligned_cols=33  Identities=30%  Similarity=0.552  Sum_probs=28.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      |+|+||||+||||++++++|+++|+   .|++++|.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~~~   33 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGH---DVVILDNL   33 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCC---eEEEEecC
Confidence            4799999999999999999999987   77777653

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.41  E-value=4.4e-07  Score=66.62  Aligned_cols=47  Identities=30%  Similarity=0.537  Sum_probs=39.8

Q ss_pred             CCChhhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         17 STPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        17 ~~~~~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ......+++||+|+||||+|.||+.+|+++++.++  ++++.++|++..
T Consensus       241 ~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p--~~i~l~~~~E~~  287 (588)
T COG1086         241 TELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNP--KEIILFSRDEYK  287 (588)
T ss_pred             HHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCC--CEEEEecCchHH
Confidence            33445668999999999999999999999999954  589999998754

>PRK06138 short chain dehydrogenase; Provisional

Probab=98.40  E-value=4.9e-07  Score=58.82  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=33.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||++++++|+++|+   .|+.+.|+.
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~G~---~v~~~~r~~   39 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFAREGA---RVVVADRDA   39 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCC---eEEEecCCH
Confidence            5688999999999999999999999987   788888864

>PRK08589 short chain dehydrogenase; Validated

Probab=98.40  E-value=5.9e-07  Score=59.74  Aligned_cols=36  Identities=14%  Similarity=0.195  Sum_probs=33.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|+++||||+|+||.++++.|+++|+   .|+++.|+
T Consensus         4 l~~k~vlItGas~gIG~aia~~l~~~G~---~vi~~~r~   39 (272)
T PRK08589          4 LENKVAVITGASTGIGQASAIALAQEGA---YVLAVDIA   39 (272)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCc
Confidence            5689999999999999999999999988   88888886

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=98.40  E-value=5.1e-07  Score=62.22  Aligned_cols=32  Identities=34%  Similarity=0.641  Sum_probs=27.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ++||||||+||||+|.+.+|++.|+   +|++++.
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~---~vvV~DN   32 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGH---EVVVLDN   32 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCC---eEEEEec
Confidence            5799999999999999999999998   5555554

>PRK08703 short chain dehydrogenase; Provisional

Probab=98.40  E-value=6.5e-07  Score=58.13  Aligned_cols=38  Identities=16%  Similarity=0.379  Sum_probs=33.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||+|+||.+++++|+++|+   .|++++|+..
T Consensus         4 l~~k~vlItG~sggiG~~la~~l~~~g~---~V~~~~r~~~   41 (239)
T PRK08703          4 LSDKTILVTGASQGLGEQVAKAYAAAGA---TVILVARHQK   41 (239)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHcCC---EEEEEeCChH
Confidence            5678999999999999999999999987   7888888653

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=98.40  E-value=6.7e-07  Score=58.95  Aligned_cols=37  Identities=22%  Similarity=0.486  Sum_probs=33.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~   39 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAEGA---RVAVLDKSA   39 (262)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            4689999999999999999999999988   788888864

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK06196 oxidoreductase; Provisional

Probab=98.39  E-value=7e-07  Score=60.62  Aligned_cols=38  Identities=18%  Similarity=0.283  Sum_probs=33.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++|+||||+|+||.+++++|+++|+   .|+++.|+..
T Consensus        24 l~~k~vlITGasggIG~~~a~~L~~~G~---~Vv~~~R~~~   61 (315)
T PRK06196         24 LSGKTAIVTGGYSGLGLETTRALAQAGA---HVIVPARRPD   61 (315)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            5789999999999999999999999988   7888888643

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=98.39  E-value=5.5e-07  Score=59.05  Aligned_cols=38  Identities=16%  Similarity=0.274  Sum_probs=33.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||+|+||.++++.|+++|+   .|++++|+..
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~---~v~~~~r~~~   41 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGA---RVVIADIKPA   41 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEcCCHH
Confidence            5678999999999999999999999988   7888887643

>PRK07577 short chain dehydrogenase; Provisional

Probab=98.39  E-value=8.6e-07  Score=57.17  Aligned_cols=37  Identities=27%  Similarity=0.300  Sum_probs=32.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+++++||||+|+||.+++++|+++|+   .|+++.|+..
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~---~v~~~~r~~~   38 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGH---QVIGIARSAI   38 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC---EEEEEeCCcc
Confidence            468999999999999999999999987   7888888643

>PRK06841 short chain dehydrogenase; Provisional

Probab=98.39  E-value=6.6e-07  Score=58.45  Aligned_cols=38  Identities=24%  Similarity=0.379  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||+|+||.+++++|+++|+   .|+.++|+..
T Consensus        13 ~~~k~vlItGas~~IG~~la~~l~~~G~---~Vi~~~r~~~   50 (255)
T PRK06841         13 LSGKVAVVTGGASGIGHAIAELFAAKGA---RVALLDRSED   50 (255)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            5789999999999999999999999987   7888888643

>PRK07814 short chain dehydrogenase; Provisional

Probab=98.39  E-value=7.9e-07  Score=58.70  Aligned_cols=37  Identities=14%  Similarity=0.282  Sum_probs=33.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.+++++|+++|+   .|+.++|+.
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~---~Vi~~~r~~   44 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGA---DVLIAARTE   44 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5689999999999999999999999987   888888864

>PRK06197 short chain dehydrogenase; Provisional

Probab=98.38  E-value=6.9e-07  Score=60.30  Aligned_cols=37  Identities=22%  Similarity=0.215  Sum_probs=33.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.+++++|+++|+   .|+++.|+.
T Consensus        14 ~~~k~vlItGas~gIG~~~a~~l~~~G~---~vi~~~r~~   50 (306)
T PRK06197         14 QSGRVAVVTGANTGLGYETAAALAAKGA---HVVLAVRNL   50 (306)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   788888864

>PRK07856 short chain dehydrogenase; Provisional

Probab=98.38  E-value=7.1e-07  Score=58.45  Aligned_cols=37  Identities=27%  Similarity=0.368  Sum_probs=33.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|+.++|+.
T Consensus         4 ~~~k~~lItGas~gIG~~la~~l~~~g~---~v~~~~r~~   40 (252)
T PRK07856          4 LTGRVVLVTGGTRGIGAGIARAFLAAGA---TVVVCGRRA   40 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCh
Confidence            5689999999999999999999999987   788888754

>PRK07063 short chain dehydrogenase; Provisional

Probab=98.38  E-value=6.6e-07  Score=58.77  Aligned_cols=37  Identities=16%  Similarity=0.220  Sum_probs=33.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||.++++.|+++|+   .|++++|+.
T Consensus         5 l~~k~vlVtGas~gIG~~~a~~l~~~G~---~vv~~~r~~   41 (260)
T PRK07063          5 LAGKVALVTGAAQGIGAAIARAFAREGA---AVALADLDA   41 (260)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999988   788888854

>PRK08278 short chain dehydrogenase; Provisional

Probab=98.37  E-value=9.1e-07  Score=58.91  Aligned_cols=38  Identities=18%  Similarity=0.378  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||+|+||.+++++|++.|+   .|++++|+..
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   41 (273)
T PRK08278          4 LSGKTLFITGASRGIGLAIALRAARDGA---NIVIAAKTAE   41 (273)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEecccc
Confidence            5678999999999999999999999987   7888888653

>PRK06128 oxidoreductase; Provisional

Probab=98.37  E-value=1.3e-06  Score=58.98  Aligned_cols=36  Identities=25%  Similarity=0.369  Sum_probs=31.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|+++||||+|+||.++++.|++.|+   .|+...++
T Consensus        53 l~~k~vlITGas~gIG~~~a~~l~~~G~---~V~i~~~~   88 (300)
T PRK06128         53 LQGRKALITGADSGIGRATAIAFAREGA---DIALNYLP   88 (300)
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHHHcCC---EEEEEeCC
Confidence            6689999999999999999999999988   66655554

>PRK06500 short chain dehydrogenase; Provisional

Probab=98.37  E-value=9.1e-07  Score=57.43  Aligned_cols=37  Identities=22%  Similarity=0.346  Sum_probs=32.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||++++++|+++|+   .|+.++|+.
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~---~v~~~~r~~   40 (249)
T PRK06500          4 LQGKTALITGGTSGIGLETARQFLAEGA---RVAITGRDP   40 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEecCCH
Confidence            4678999999999999999999999987   788888753

>PRK05867 short chain dehydrogenase; Provisional

Probab=98.37  E-value=7e-07  Score=58.52  Aligned_cols=37  Identities=14%  Similarity=0.260  Sum_probs=33.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.+++++|+++|+   .|+++.|+.
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~---~V~~~~r~~   43 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGA---QVAIAARHL   43 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            5789999999999999999999999988   788888764

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=98.37  E-value=6.9e-07  Score=58.85  Aligned_cols=37  Identities=27%  Similarity=0.508  Sum_probs=33.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~---~V~~~~r~~   40 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGA---RVAVLERSA   40 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5689999999999999999999999988   788888864

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=98.36  E-value=7.5e-07  Score=57.94  Aligned_cols=35  Identities=17%  Similarity=0.220  Sum_probs=31.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++||||+|++|++++++|+++|+   .|++++|+.
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~---~v~~~~r~~   35 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGA---NVVVNDLGE   35 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            46899999999999999999999988   889898864

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK06180 short chain dehydrogenase; Provisional

Probab=98.36  E-value=8.5e-07  Score=59.02  Aligned_cols=36  Identities=17%  Similarity=0.264  Sum_probs=32.1

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++++||||+|+||++++++|+++|+   .|++++|++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~---~V~~~~r~~   38 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGH---RVVGTVRSE   38 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcC---EEEEEeCCH
Confidence            357899999999999999999999988   788888864

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.36  E-value=9.3e-07  Score=57.12  Aligned_cols=38  Identities=13%  Similarity=0.197  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||+|+||.++++.|++.|+   .|++++|++.
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~---~V~~~~r~~~   40 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFALKEGA---QVCINSRNEN   40 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            4678999999999999999999999988   8888888643

>PRK06949 short chain dehydrogenase; Provisional

Probab=98.36  E-value=1.1e-06  Score=57.44  Aligned_cols=38  Identities=18%  Similarity=0.309  Sum_probs=33.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||+|+||++++++|+++|+   .|+++.|+..
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~---~Vi~~~r~~~   44 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA---KVVLASRRVE   44 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            5689999999999999999999999987   7888888643

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.36  E-value=9.7e-07  Score=56.85  Aligned_cols=36  Identities=22%  Similarity=0.404  Sum_probs=30.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++.++++||||+|++|++++++|+++|+   .|+++.|.
T Consensus         4 ~~~~~vlItGasg~iG~~l~~~l~~~g~---~v~~~~~~   39 (249)
T PRK12825          4 LMGRVALVTGAARGLGRAIALRLARAGA---DVVVHYRS   39 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCC
Confidence            4467999999999999999999999988   56665554

>PRK05875 short chain dehydrogenase; Provisional

Probab=98.36  E-value=9e-07  Score=58.58  Aligned_cols=37  Identities=27%  Similarity=0.466  Sum_probs=33.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||+++++.|+++|+   .|+.++|+.
T Consensus         5 ~~~k~vlItGasg~IG~~la~~l~~~G~---~V~~~~r~~   41 (276)
T PRK05875          5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA---AVMIVGRNP   41 (276)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEeCCH
Confidence            5679999999999999999999999988   788888864

>PRK07478 short chain dehydrogenase; Provisional

Probab=98.36  E-value=7.6e-07  Score=58.28  Aligned_cols=38  Identities=13%  Similarity=0.275  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||+|+||.+++++|++.|+   .|+.++|++.
T Consensus         4 ~~~k~~lItGas~giG~~ia~~l~~~G~---~v~~~~r~~~   41 (254)
T PRK07478          4 LNGKVAIITGASSGIGRAAAKLFAREGA---KVVVGARRQA   41 (254)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            5678999999999999999999999988   7888888643

>PRK07201 short chain dehydrogenase; Provisional

Probab=98.36  E-value=6.9e-07  Score=65.61  Aligned_cols=34  Identities=44%  Similarity=0.767  Sum_probs=29.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHH--hCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLR--SCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~--~g~~~~~V~~l~r~~   63 (82)
                      |+|+|||||||||++++++|++  .++   .|++++|+.
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~---~V~~l~R~~   36 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREA---TVHVLVRRQ   36 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCC---EEEEEECcc
Confidence            4799999999999999999994  555   899999954

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=98.36  E-value=1.1e-06  Score=57.75  Aligned_cols=37  Identities=24%  Similarity=0.360  Sum_probs=33.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.+++++|++.|+   .|+.++|+.
T Consensus        10 ~~~k~ilItGa~g~IG~~la~~l~~~G~---~V~~~~r~~   46 (259)
T PRK08213         10 LSGKTALVTGGSRGLGLQIAEALGEAGA---RVVLSARKA   46 (259)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            5689999999999999999999999987   788888754

>PRK06179 short chain dehydrogenase; Provisional

Probab=98.36  E-value=9.7e-07  Score=58.26  Aligned_cols=36  Identities=25%  Similarity=0.378  Sum_probs=32.1

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++++++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~---~V~~~~r~~   38 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGY---RVFGTSRNP   38 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCCh
Confidence            357899999999999999999999987   788888864

>PRK07326 short chain dehydrogenase; Provisional

Probab=98.36  E-value=8.9e-07  Score=57.19  Aligned_cols=37  Identities=22%  Similarity=0.381  Sum_probs=32.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|++|++++++|++.|+   .|++++|++
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~---~V~~~~r~~   40 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGY---KVAITARDQ   40 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCC---EEEEeeCCH
Confidence            4568999999999999999999999987   788888864

>PRK06172 short chain dehydrogenase; Provisional

Probab=98.35  E-value=8e-07  Score=58.07  Aligned_cols=38  Identities=18%  Similarity=0.345  Sum_probs=34.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||+|+||.+++++|+++|.   .|+++.|+..
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~G~---~v~~~~r~~~   42 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFAREGA---KVVVADRDAA   42 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence            5689999999999999999999999987   7888888643

>PRK09072 short chain dehydrogenase; Provisional

Probab=98.35  E-value=1.1e-06  Score=57.87  Aligned_cols=37  Identities=27%  Similarity=0.490  Sum_probs=33.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.+++++|+++|+   .|++++|++
T Consensus         3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~---~V~~~~r~~   39 (263)
T PRK09072          3 LKDKRVLLTGASGGIGQALAEALAAAGA---RLLLVGRNA   39 (263)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEECCH
Confidence            4578999999999999999999999988   788888864

>PRK08265 short chain dehydrogenase; Provisional

Probab=98.35  E-value=9.8e-07  Score=58.29  Aligned_cols=38  Identities=16%  Similarity=0.340  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||+|+||++++++|+++|+   .|++++|+..
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   41 (261)
T PRK08265          4 LAGKVAIVTGGATLIGAAVARALVAAGA---RVAIVDIDAD   41 (261)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            4678999999999999999999999988   7888888643

>PRK12320 hypothetical protein; Provisional

Probab=98.35  E-value=8e-07  Score=66.85  Aligned_cols=34  Identities=18%  Similarity=0.334  Sum_probs=30.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|+||||+||||++++++|+++|+   .|++++|..
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~---~Vi~ldr~~   34 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGH---TVSGIAQHP   34 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC---EEEEEeCCh
Confidence            4799999999999999999999988   888888753

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=98.35  E-value=9.5e-07  Score=65.20  Aligned_cols=40  Identities=25%  Similarity=0.319  Sum_probs=35.2

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.+.+++|+||||+|+||++++++|++.|+   .|+++.|+..
T Consensus        76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~---~Vval~Rn~e  115 (576)
T PLN03209         76 DTKDEDLAFVAGATGKVGSRTVRELLKLGF---RVRAGVRSAQ  115 (576)
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCC---eEEEEeCCHH
Confidence            446789999999999999999999999988   8888888654

>PRK07060 short chain dehydrogenase; Provisional

Probab=98.34  E-value=1.3e-06  Score=56.51  Aligned_cols=37  Identities=22%  Similarity=0.352  Sum_probs=33.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|++|.++++.|+++|+   .|++++|+.
T Consensus         7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~---~V~~~~r~~   43 (245)
T PRK07060          7 FSGKSVLVTGASSGIGRACAVALAQRGA---RVVAAARNA   43 (245)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5678999999999999999999999987   788888864

>PRK07062 short chain dehydrogenase; Provisional

Probab=98.34  E-value=9.6e-07  Score=58.13  Aligned_cols=38  Identities=29%  Similarity=0.400  Sum_probs=34.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||+|+||.+++++|+++|+   .|+.++|+..
T Consensus         6 l~~k~~lItGas~giG~~ia~~l~~~G~---~V~~~~r~~~   43 (265)
T PRK07062          6 LEGRVAVVTGGSSGIGLATVELLLEAGA---SVAICGRDEE   43 (265)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCHH
Confidence            5789999999999999999999999988   7888888653

>PRK09291 short chain dehydrogenase; Provisional

Probab=98.34  E-value=1.2e-06  Score=57.20  Aligned_cols=35  Identities=17%  Similarity=0.316  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++||||+|+||++++++|++.|+   .|+++.|+.
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~---~v~~~~r~~   36 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGH---NVIAGVQIA   36 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            46899999999999999999999987   788888854

>PLN00016 RNA-binding protein; Provisional

Probab=98.34  E-value=7e-07  Score=62.17  Aligned_cols=37  Identities=27%  Similarity=0.596  Sum_probs=33.3

Q ss_pred             cCcEEEEE----cCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVT----GGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilIt----G~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ..++|+||    |||||||++++++|+++|+   +|++++|...
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~---~V~~l~R~~~   91 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH---EVTLFTRGKE   91 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCC---EEEEEecCCc
Confidence            34789999    9999999999999999998   8999999754

>PRK06701 short chain dehydrogenase; Provisional

Probab=98.34  E-value=1.6e-06  Score=58.44  Aligned_cols=38  Identities=13%  Similarity=0.308  Sum_probs=33.6

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++++++||||+|+||.+++++|+++|.   .|+.+.|..
T Consensus        43 ~~~~k~iLItGasggIG~~la~~l~~~G~---~V~l~~r~~   80 (290)
T PRK06701         43 KLKGKVALITGGDSGIGRAVAVLFAKEGA---DIAIVYLDE   80 (290)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            46789999999999999999999999988   777777754

>PRK07035 short chain dehydrogenase; Provisional

Probab=98.34  E-value=1.3e-06  Score=57.09  Aligned_cols=37  Identities=16%  Similarity=0.279  Sum_probs=33.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.+++++|++.|+   .|+.++|+.
T Consensus         6 l~~k~vlItGas~gIG~~l~~~l~~~G~---~Vi~~~r~~   42 (252)
T PRK07035          6 LTGKIALVTGASRGIGEAIAKLLAQQGA---HVIVSSRKL   42 (252)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5679999999999999999999999987   788888854

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=98.34  E-value=7.2e-07  Score=60.41  Aligned_cols=38  Identities=24%  Similarity=0.436  Sum_probs=34.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++++++|||||+.||..++++|.++|+   .++.+.|+.+
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~---~liLvaR~~~   41 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGY---NLILVARRED   41 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCcHH
Confidence            4678999999999999999999999998   8999999755

>PRK06182 short chain dehydrogenase; Validated

Probab=98.34  E-value=1.1e-06  Score=58.26  Aligned_cols=36  Identities=25%  Similarity=0.333  Sum_probs=32.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++++++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~---~V~~~~r~~   37 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGY---TVYGAARRV   37 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            468999999999999999999999988   788888864

>PRK07102 short chain dehydrogenase; Provisional

Probab=98.33  E-value=8.2e-07  Score=57.78  Aligned_cols=35  Identities=14%  Similarity=0.351  Sum_probs=31.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+++||||+|+||.++++.|+++|+   .|++++|+++
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~---~Vi~~~r~~~   36 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA---RLYLAARDVE   36 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC---EEEEEeCCHH
Confidence            6899999999999999999999987   7888888654

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=98.33  E-value=1.4e-06  Score=57.35  Aligned_cols=37  Identities=27%  Similarity=0.363  Sum_probs=32.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.++++.|+++|+   .|+.++|+.
T Consensus         7 l~~k~vlItG~s~gIG~~la~~l~~~G~---~v~~~~~~~   43 (266)
T PRK06171          7 LQGKIIIVTGGSSGIGLAIVKELLANGA---NVVNADIHG   43 (266)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            5789999999999999999999999988   777777654

>PRK12827 short chain dehydrogenase; Provisional

Probab=98.33  E-value=1.8e-06  Score=55.91  Aligned_cols=35  Identities=26%  Similarity=0.527  Sum_probs=30.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +++++++||||+|+||.++++.|+++|+   .|+++.|
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~g~---~v~~~~~   38 (249)
T PRK12827          4 LDSRRVLITGGSGGLGRAIAVRLAADGA---DVIVLDI   38 (249)
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC---eEEEEcC
Confidence            4578999999999999999999999988   6777665

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=98.33  E-value=5.8e-07  Score=60.84  Aligned_cols=34  Identities=38%  Similarity=0.640  Sum_probs=29.1

Q ss_pred             EEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         30 FVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        30 lItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |||||+||+|++++++|+++|+ ...|+++++...
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~-~~~Vr~~d~~~~   34 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGY-IYEVRVLDRSPP   34 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCC-ceEEEEcccccc
Confidence            6999999999999999999984 348888887654

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=98.33  E-value=1.1e-06  Score=60.10  Aligned_cols=25  Identities=36%  Similarity=0.852  Sum_probs=23.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCP   51 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~   51 (82)
                      ++|+||||+||||+++++.|+++|+
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~   26 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETS   26 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCC
Confidence            5799999999999999999999986

>PRK08263 short chain dehydrogenase; Provisional

Probab=98.33  E-value=1.2e-06  Score=58.14  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=32.1

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         2 ~~k~vlItGasg~iG~~~a~~l~~~g~---~V~~~~r~~   37 (275)
T PRK08263          2 MEKVWFITGASRGFGRAWTEAALERGD---RVVATARDT   37 (275)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEECCH
Confidence            357899999999999999999999987   788888864

>PRK05876 short chain dehydrogenase; Provisional

Probab=98.32  E-value=1.3e-06  Score=58.41  Aligned_cols=37  Identities=22%  Similarity=0.288  Sum_probs=32.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||+++++.|+++|+   .|+..+|+.
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~---~Vv~~~r~~   40 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGA---RVVLGDVDK   40 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999987   677777754

>PRK06114 short chain dehydrogenase; Provisional

Probab=98.32  E-value=1.6e-06  Score=56.90  Aligned_cols=37  Identities=19%  Similarity=0.276  Sum_probs=33.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus         6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~---~v~~~~r~~   42 (254)
T PRK06114          6 LDGQVAFVTGAGSGIGQRIAIGLAQAGA---DVALFDLRT   42 (254)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            5789999999999999999999999987   788888864

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.32  E-value=1.4e-06  Score=56.56  Aligned_cols=38  Identities=24%  Similarity=0.382  Sum_probs=33.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||+|+||.+++++|+++|+   .|++++|+..
T Consensus         5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~---~Vi~~~r~~~   42 (239)
T PRK07666          5 LQGKNALITGAGRGIGRAVAIALAKEGV---NVGLLARTEE   42 (239)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            4568999999999999999999999987   7888888643

>PRK05866 short chain dehydrogenase; Provisional

Probab=98.32  E-value=1.5e-06  Score=58.77  Aligned_cols=37  Identities=16%  Similarity=0.375  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.+++++|++.|+   .|++++|+.
T Consensus        38 ~~~k~vlItGasggIG~~la~~La~~G~---~Vi~~~R~~   74 (293)
T PRK05866         38 LTGKRILLTGASSGIGEAAAEQFARRGA---TVVAVARRE   74 (293)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            6789999999999999999999999987   888888864

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=98.31  E-value=1.2e-06  Score=57.38  Aligned_cols=37  Identities=16%  Similarity=0.221  Sum_probs=33.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.+++++||||+|+||.+++++|+++|+   .|+..+|+.
T Consensus         7 l~~k~~lItGas~giG~~ia~~L~~~G~---~vvl~~r~~   43 (254)
T PRK08085          7 LAGKNILITGSAQGIGFLLATGLAEYGA---EIIINDITA   43 (254)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCC---EEEEEcCCH
Confidence            5689999999999999999999999987   788888764

>PRK06482 short chain dehydrogenase; Provisional

Probab=98.31  E-value=1.5e-06  Score=57.58  Aligned_cols=35  Identities=23%  Similarity=0.416  Sum_probs=31.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++++||||+|+||++++++|+++|+   .|+++.|+.
T Consensus         2 ~k~vlVtGasg~IG~~la~~L~~~g~---~v~~~~r~~   36 (276)
T PRK06482          2 SKTWFITGASSGFGRGMTERLLARGD---RVAATVRRP   36 (276)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            36899999999999999999999987   788888754

>PRK07985 oxidoreductase; Provisional

Probab=98.31  E-value=2.4e-06  Score=57.66  Aligned_cols=36  Identities=22%  Similarity=0.405  Sum_probs=31.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++++++||||+|+||.+++++|+++|+   .|++..|+
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~G~---~Vi~~~~~   82 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYAREGA---DVAISYLP   82 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCC---EEEEecCC
Confidence            6789999999999999999999999988   67766654

>PRK07825 short chain dehydrogenase; Provisional

Probab=98.31  E-value=1.5e-06  Score=57.45  Aligned_cols=37  Identities=16%  Similarity=0.156  Sum_probs=32.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.+++++|+++|+   .|.+.+|++
T Consensus         3 ~~~~~ilVtGasggiG~~la~~l~~~G~---~v~~~~r~~   39 (273)
T PRK07825          3 LRGKVVAITGGARGIGLATARALAALGA---RVAIGDLDE   39 (273)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEECCH
Confidence            4578999999999999999999999987   677777754

>PRK08643 acetoin reductase; Validated

Probab=98.31  E-value=1.3e-06  Score=57.22  Aligned_cols=35  Identities=14%  Similarity=0.247  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +|+++||||+|+||.++++.|+++|+   .|+.++|+.
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~---~v~~~~r~~   36 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGF---KVAIVDYNE   36 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            67999999999999999999999987   788888864

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.31  E-value=1.6e-06  Score=56.01  Aligned_cols=37  Identities=16%  Similarity=0.372  Sum_probs=32.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.++++.|+++|+   .|++++|+.
T Consensus         3 l~~k~~lVtGas~~iG~~ia~~l~~~G~---~v~~~~r~~   39 (235)
T PRK06550          3 FMTKTVLITGAASGIGLAQARAFLAQGA---QVYGVDKQD   39 (235)
T ss_pred             CCCCEEEEcCCCchHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            5678999999999999999999999987   788888754

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.31  E-value=1.5e-06  Score=56.67  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .|+++||||+|+||+++++.|+++|+   .|++++|..
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~g~---~vi~~~r~~   36 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAAGF---DLAINDRPD   36 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC---EEEEEecCc
Confidence            36899999999999999999999987   788888753

>KOG1371|consensus

Probab=98.30  E-value=1.1e-06  Score=60.93  Aligned_cols=50  Identities=26%  Similarity=0.420  Sum_probs=36.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCccHHHHHHHHHh
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIIN   77 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~~~~~~~~~~~   77 (82)
                      +++||||||.||||+|.+-+|++.|+++..|..+.|..  .....+++++..
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~--~~sl~r~~~l~~   51 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSY--LESLKRVRQLLG   51 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccc--hhHHHHHHHhcC
Confidence            57899999999999999999999999655555555543  223445555444

>PRK12939 short chain dehydrogenase; Provisional

Probab=98.30  E-value=1.3e-06  Score=56.59  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=33.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||+|+||++++++|+++|+   .|++++|++.
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~---~v~~~~r~~~   42 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGA---TVAFNDGLAA   42 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence            5679999999999999999999999988   7888877643

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=98.30  E-value=1.6e-06  Score=56.51  Aligned_cols=37  Identities=14%  Similarity=0.272  Sum_probs=32.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         6 ~~~k~vlItGas~~iG~~la~~l~~~G~---~v~~~~~~~   42 (252)
T PRK08220          6 FSGKTVWVTGAAQGIGYAVALAFVEAGA---KVIGFDQAF   42 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEecch
Confidence            5679999999999999999999999988   777777754

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.30  E-value=1.3e-06  Score=56.48  Aligned_cols=37  Identities=19%  Similarity=0.341  Sum_probs=31.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE-eCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL-MRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l-~r~~   63 (82)
                      +++++++||||+|+||.+++++|++.|+   .|+.+ .|+.
T Consensus         3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~---~v~~~~~r~~   40 (247)
T PRK05565          3 LMGKVAIVTGASGGIGRAIAELLAKEGA---KVVIAYDINE   40 (247)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEcCCCH
Confidence            5678999999999999999999999987   67776 7753

>PRK05854 short chain dehydrogenase; Provisional

Probab=98.30  E-value=1.6e-06  Score=59.03  Aligned_cols=38  Identities=21%  Similarity=0.333  Sum_probs=34.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||+++||.+++++|+++|.   .|+.+.|+..
T Consensus        12 l~gk~~lITGas~GIG~~~a~~La~~G~---~Vil~~R~~~   49 (313)
T PRK05854         12 LSGKRAVVTGASDGLGLGLARRLAAAGA---EVILPVRNRA   49 (313)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            5789999999999999999999999987   8888888643

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=98.29  E-value=1.4e-06  Score=57.79  Aligned_cols=37  Identities=24%  Similarity=0.538  Sum_probs=33.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         8 ~~~k~vlVtGas~giG~~ia~~l~~~G~---~V~~~~r~~   44 (278)
T PRK08277          8 LKGKVAVITGGGGVLGGAMAKELARAGA---KVAILDRNQ   44 (278)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5689999999999999999999999988   788888864

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=98.29  E-value=1.6e-06  Score=56.84  Aligned_cols=36  Identities=19%  Similarity=0.214  Sum_probs=31.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++||||+|+||.+++++|++.|+   .|+.++|+..
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~---~vi~~~r~~~   37 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY---RVAVADINSE   37 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            57899999999999999999999987   7888888643

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.29  E-value=1.6e-06  Score=56.82  Aligned_cols=36  Identities=25%  Similarity=0.566  Sum_probs=31.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|+++||||+|+||.+++++|++.|+   .|+++.+.
T Consensus         5 l~~k~~lItGas~gIG~~~a~~l~~~G~---~v~~~~~~   40 (255)
T PRK06463          5 FKGKVALITGGTRGIGRAIAEAFLREGA---KVAVLYNS   40 (255)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCC
Confidence            5689999999999999999999999987   66666553

>PRK05993 short chain dehydrogenase; Provisional

Probab=98.28  E-value=1.5e-06  Score=57.92  Aligned_cols=35  Identities=20%  Similarity=0.306  Sum_probs=31.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus         4 ~k~vlItGasggiG~~la~~l~~~G~---~Vi~~~r~~   38 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQSDGW---RVFATCRKE   38 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            57899999999999999999999987   788888864

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=98.28  E-value=1.8e-06  Score=56.51  Aligned_cols=37  Identities=16%  Similarity=0.195  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         9 ~~~k~ilItGas~~IG~~la~~l~~~G~---~v~~~~r~~   45 (256)
T PRK06124          9 LAGQVALVTGSARGLGFEIARALAGAGA---HVLVNGRNA   45 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCC---eEEEEeCCH
Confidence            6789999999999999999999999987   888888864

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.28  E-value=1.9e-06  Score=56.10  Aligned_cols=35  Identities=20%  Similarity=0.389  Sum_probs=29.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +++++++||||+|+||+++++.|+++|+   .|+...+
T Consensus         3 l~~k~ilItGas~gIG~~la~~l~~~G~---~vv~~~~   37 (253)
T PRK08642          3 ISEQTVLVTGGSRGLGAAIARAFAREGA---RVVVNYH   37 (253)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCC---eEEEEcC
Confidence            5678999999999999999999999987   5655443

>PRK12746 short chain dehydrogenase; Provisional

Probab=98.28  E-value=1.9e-06  Score=56.29  Aligned_cols=36  Identities=17%  Similarity=0.278  Sum_probs=30.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE-eCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL-MRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l-~r~   62 (82)
                      +++++++||||+|+||++++++|+++|+   .|.++ .|+
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~G~---~v~i~~~r~   40 (254)
T PRK12746          4 LDGKVALVTGASRGIGRAIAMRLANDGA---LVAIHYGRN   40 (254)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCC
Confidence            4578999999999999999999999987   56554 454

>PRK08339 short chain dehydrogenase; Provisional

Probab=98.28  E-value=1.9e-06  Score=57.16  Aligned_cols=37  Identities=22%  Similarity=0.300  Sum_probs=33.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|.||.+++++|+++|+   .|++++|+.
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~---~V~~~~r~~   42 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARAGA---DVILLSRNE   42 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999988   788888864

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=98.28  E-value=1.9e-06  Score=58.57  Aligned_cols=37  Identities=16%  Similarity=0.192  Sum_probs=32.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++++++||||+|+||.++++.|+++|+   .|++++|+.
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~---~V~~~~r~~   40 (322)
T PRK07453          4 DAKGTVIITGASSGVGLYAAKALAKRGW---HVIMACRNL   40 (322)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC---EEEEEECCH
Confidence            3578999999999999999999999987   788888854

>PRK07576 short chain dehydrogenase; Provisional

Probab=98.28  E-value=2.1e-06  Score=56.89  Aligned_cols=38  Identities=21%  Similarity=0.389  Sum_probs=34.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||+|+||.+++++|++.|+   .|++++|+.+
T Consensus         7 ~~~k~ilItGasggIG~~la~~l~~~G~---~V~~~~r~~~   44 (264)
T PRK07576          7 FAGKNVVVVGGTSGINLGIAQAFARAGA---NVAVASRSQE   44 (264)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            6789999999999999999999999988   7888888643

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.28  E-value=2e-06  Score=55.87  Aligned_cols=36  Identities=17%  Similarity=0.311  Sum_probs=30.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++++++||||+|+||++++++|+++|+   .|+...|+
T Consensus         4 ~~~~~vlitGasg~iG~~l~~~l~~~g~---~v~~~~~~   39 (252)
T PRK06077          4 LKDKVVVVTGSGRGIGRAIAVRLAKEGS---LVVVNAKK   39 (252)
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCC
Confidence            4578999999999999999999999987   66655543

>PRK08264 short chain dehydrogenase; Validated

Probab=98.27  E-value=1.9e-06  Score=55.80  Aligned_cols=38  Identities=29%  Similarity=0.484  Sum_probs=32.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|++|++++++|+++|+  ..|+.++|+.
T Consensus         4 ~~~~~vlItGgsg~iG~~la~~l~~~G~--~~V~~~~r~~   41 (238)
T PRK08264          4 IKGKVVLVTGANRGIGRAFVEQLLARGA--AKVYAAARDP   41 (238)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCc--ccEEEEecCh
Confidence            4678999999999999999999999975  2577777754

>PRK12742 oxidoreductase; Provisional

Probab=98.27  E-value=2.2e-06  Score=55.31  Aligned_cols=35  Identities=20%  Similarity=0.475  Sum_probs=30.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +++++++||||+|+||++++++|+++|.   .|+...+
T Consensus         4 ~~~k~vlItGasggIG~~~a~~l~~~G~---~v~~~~~   38 (237)
T PRK12742          4 FTGKKVLVLGGSRGIGAAIVRRFVTDGA---NVRFTYA   38 (237)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEecC
Confidence            5678999999999999999999999987   6666554

>PRK07074 short chain dehydrogenase; Provisional

Probab=98.27  E-value=2e-06  Score=56.27  Aligned_cols=36  Identities=25%  Similarity=0.415  Sum_probs=31.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++||||+|+||.+++++|+++|.   .|++++|+..
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~---~v~~~~r~~~   37 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGD---RVLALDIDAA   37 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            57899999999999999999999987   7888888643

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=98.26  E-value=2e-06  Score=56.62  Aligned_cols=36  Identities=14%  Similarity=0.161  Sum_probs=32.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|+++||||+++||.+++++|++.|+   .|+++.|.
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~---~vv~~~~~   41 (251)
T PRK12481          6 LNGKVAIITGCNTGLGQGMAIGLAKAGA---DIVGVGVA   41 (251)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEecCc
Confidence            5689999999999999999999999988   77777764

>PRK06101 short chain dehydrogenase; Provisional

Probab=98.26  E-value=2.2e-06  Score=55.87  Aligned_cols=34  Identities=24%  Similarity=0.258  Sum_probs=30.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++++||||+|+||.+++++|+++|+   .|++++|++
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~---~V~~~~r~~   35 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW---QVIACGRNQ   35 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC---EEEEEECCH
Confidence            6799999999999999999999988   788888864

>PRK08251 short chain dehydrogenase; Provisional

Probab=98.26  E-value=2.2e-06  Score=55.75  Aligned_cols=35  Identities=14%  Similarity=0.311  Sum_probs=31.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++||||+|+||.+++++|+++|.   .|+.++|++
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~---~v~~~~r~~   36 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR---DLALCARRT   36 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            57899999999999999999999987   788888864

>PRK07023 short chain dehydrogenase; Provisional

Probab=98.26  E-value=2e-06  Score=55.94  Aligned_cols=34  Identities=26%  Similarity=0.356  Sum_probs=30.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus         2 ~~vlItGasggiG~~ia~~l~~~G~---~v~~~~r~~   35 (243)
T PRK07023          2 VRAIVTGHSRGLGAALAEQLLQPGI---AVLGVARSR   35 (243)
T ss_pred             ceEEEecCCcchHHHHHHHHHhCCC---EEEEEecCc
Confidence            4799999999999999999999987   777888764

>PRK07904 short chain dehydrogenase; Provisional

Probab=98.25  E-value=2.6e-06  Score=56.30  Aligned_cols=37  Identities=22%  Similarity=0.504  Sum_probs=32.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhC-CCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSC-PGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g-~~~~~V~~l~r~~~   64 (82)
                      ++++|+||||+|+||.+++++|+++| +   .|+++.|+++
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~---~V~~~~r~~~   44 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPA---RVVLAALPDD   44 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCC---eEEEEeCCcc
Confidence            56899999999999999999999985 5   7888888654

>PRK08177 short chain dehydrogenase; Provisional

Probab=98.25  E-value=2.6e-06  Score=54.97  Aligned_cols=36  Identities=22%  Similarity=0.325  Sum_probs=32.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ++++||||+|++|++++++|++.|+   .|++++|++..
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~---~V~~~~r~~~~   37 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW---QVTATVRGPQQ   37 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC---EEEEEeCCCcc
Confidence            5799999999999999999999987   88999987643

>PRK07454 short chain dehydrogenase; Provisional

Probab=98.25  E-value=2.2e-06  Score=55.67  Aligned_cols=36  Identities=17%  Similarity=0.267  Sum_probs=32.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++||||+|++|.+++++|+++|.   .|++++|++.
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~~G~---~V~~~~r~~~   41 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAKAGW---DLALVARSQD   41 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            57899999999999999999999987   8899998653

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=98.24  E-value=2.2e-06  Score=55.45  Aligned_cols=36  Identities=22%  Similarity=0.250  Sum_probs=30.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++++++||||+|+||+++++.|+++|+   .|....|+
T Consensus         4 ~~~~~vlItGa~g~iG~~la~~l~~~g~---~v~~~~~~   39 (245)
T PRK12936          4 LSGRKALVTGASGGIGEEIARLLHAQGA---IVGLHGTR   39 (245)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEcCC
Confidence            4578999999999999999999999987   66666654

>PRK12747 short chain dehydrogenase; Provisional

Probab=98.24  E-value=2.6e-06  Score=55.68  Aligned_cols=34  Identities=15%  Similarity=0.327  Sum_probs=29.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      +++|+++||||+|+||.+++++|++.|+   .|.+..
T Consensus         2 ~~~k~~lItGas~gIG~~ia~~l~~~G~---~v~~~~   35 (252)
T PRK12747          2 LKGKVALVTGASRGIGRAIAKRLANDGA---LVAIHY   35 (252)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC---eEEEEc
Confidence            4679999999999999999999999987   566554

>PRK08219 short chain dehydrogenase; Provisional

Probab=98.24  E-value=2.4e-06  Score=54.66  Aligned_cols=34  Identities=21%  Similarity=0.373  Sum_probs=30.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .|+++||||+|++|+++++.|+++ +   .|++++|+.
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~---~V~~~~r~~   36 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-H---TLLLGGRPA   36 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-C---CEEEEeCCH
Confidence            468999999999999999999988 7   789999864

>PRK12937 short chain dehydrogenase; Provisional

Probab=98.24  E-value=2.8e-06  Score=54.98  Aligned_cols=36  Identities=17%  Similarity=0.222  Sum_probs=30.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++++++||||+|+||++++++|+++|+   .|+.+.|+
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~---~v~~~~~~   38 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGF---AVAVNYAG   38 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEecCC
Confidence            5679999999999999999999999987   66655554

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=98.24  E-value=2.3e-06  Score=55.99  Aligned_cols=34  Identities=21%  Similarity=0.334  Sum_probs=30.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+++||||+|+||.++++.|+++|+   .|++++|++
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~---~V~~~~r~~   34 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH---KVIATGRRQ   34 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC---EEEEEECCH
Confidence            4799999999999999999999988   788888864

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=98.23  E-value=2.1e-06  Score=58.76  Aligned_cols=33  Identities=24%  Similarity=0.606  Sum_probs=26.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ++|+||||+||||++++++|+++|..  .|+.+++
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~~--~v~~~~~   33 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQD--SVVNVDK   33 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCCC--eEEEecC
Confidence            47999999999999999999999753  3444443

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=98.23  E-value=2.9e-06  Score=55.94  Aligned_cols=36  Identities=25%  Similarity=0.432  Sum_probs=31.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|+++||||+++||.++++.|++.|.   .|+.+.|+
T Consensus         6 l~~k~vlItGas~gIG~~ia~~l~~~G~---~v~~~~~~   41 (260)
T PRK08416          6 MKGKTLVISGGTRGIGKAIVYEFAQSGV---NIAFTYNS   41 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCC
Confidence            6789999999999999999999999988   66666553

>PRK06924 short chain dehydrogenase; Provisional

Probab=98.23  E-value=2.7e-06  Score=55.43  Aligned_cols=34  Identities=24%  Similarity=0.443  Sum_probs=30.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+++||||+|+||++++++|+++|+   .|++++|.+
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~---~V~~~~r~~   35 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGT---HVISISRTE   35 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCC---EEEEEeCCc
Confidence            5799999999999999999999987   788888865

>PRK08267 short chain dehydrogenase; Provisional

Probab=98.23  E-value=2.1e-06  Score=56.39  Aligned_cols=35  Identities=14%  Similarity=0.145  Sum_probs=31.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+++||||+|+||++++++|+++|+   .|++++|+.+
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~---~V~~~~r~~~   36 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW---RVGAYDINEA   36 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCHH
Confidence            6799999999999999999999987   7888887643

>PRK06483 dihydromonapterin reductase; Provisional

Probab=98.23  E-value=3.3e-06  Score=54.75  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=32.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +|+++||||+|+||.+++++|+++|+   .|++++|++.
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   37 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQ---PVIVSYRTHY   37 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCC---eEEEEeCCch
Confidence            47899999999999999999999988   7888888653

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=98.23  E-value=2.3e-06  Score=60.92  Aligned_cols=37  Identities=24%  Similarity=0.464  Sum_probs=33.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|.++|.   .|++++|++
T Consensus       176 l~gK~VLITGASgGIG~aLA~~La~~G~---~Vi~l~r~~  212 (406)
T PRK07424        176 LKGKTVAVTGASGTLGQALLKELHQQGA---KVVALTSNS  212 (406)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5689999999999999999999999987   788888754

>PRK07024 short chain dehydrogenase; Provisional

Probab=98.22  E-value=3.2e-06  Score=55.55  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++++||||+|+||.+++++|++.|+   .|++++|+.
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~---~v~~~~r~~   36 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA---TLGLVARRT   36 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            46899999999999999999999987   788888753

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=98.22  E-value=2.7e-06  Score=55.76  Aligned_cols=37  Identities=11%  Similarity=0.170  Sum_probs=32.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.+++++|+++|.   .|+.++|..
T Consensus         9 l~~k~vlVtG~s~gIG~~la~~l~~~G~---~vv~~~r~~   45 (255)
T PRK06113          9 LDGKCAIITGAGAGIGKEIAITFATAGA---SVVVSDINA   45 (255)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCCH
Confidence            5689999999999999999999999987   677777753

>PRK08017 oxidoreductase; Provisional

Probab=98.22  E-value=2.6e-06  Score=55.58  Aligned_cols=35  Identities=23%  Similarity=0.239  Sum_probs=31.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++++||||+|+||.++++.|+++|+   .|+++.|+..
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~---~v~~~~r~~~   37 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY---RVLAACRKPD   37 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            5899999999999999999999987   7888888643

>PRK12744 short chain dehydrogenase; Provisional

Probab=98.21  E-value=4.7e-06  Score=54.69  Aligned_cols=35  Identities=14%  Similarity=0.328  Sum_probs=30.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +++++++||||+|+||.+++++|++.|+   .|+.+.+
T Consensus         6 l~~k~vlItGa~~gIG~~~a~~l~~~G~---~vv~i~~   40 (257)
T PRK12744          6 LKGKVVLIAGGAKNLGGLIARDLAAQGA---KAVAIHY   40 (257)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC---cEEEEec
Confidence            5678999999999999999999999987   5555554

>PRK09134 short chain dehydrogenase; Provisional

Probab=98.21  E-value=4e-06  Score=55.08  Aligned_cols=35  Identities=17%  Similarity=0.247  Sum_probs=29.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ..+++++||||+|+||++++++|++.|+   .|+++.+
T Consensus         7 ~~~k~vlItGas~giG~~la~~l~~~g~---~v~~~~~   41 (258)
T PRK09134          7 AAPRAALVTGAARRIGRAIALDLAAHGF---DVAVHYN   41 (258)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeC
Confidence            3578999999999999999999999987   6666555

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=98.21  E-value=2.8e-06  Score=55.25  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=29.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEE-EeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYL-LMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~-l~r~   62 (82)
                      +.+++++||||+|+||.+++++|++.|+   .|++ ..|+
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~---~v~~~~~r~   38 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEEGY---DIAVNYARS   38 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCC
Confidence            4568999999999999999999999987   5554 4554

>PRK07775 short chain dehydrogenase; Provisional

Probab=98.21  E-value=4.1e-06  Score=55.75  Aligned_cols=37  Identities=19%  Similarity=0.161  Sum_probs=31.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ..+++++||||+|+||++++++|+++|+   .|+++.|+.
T Consensus         8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~---~V~~~~r~~   44 (274)
T PRK07775          8 PDRRPALVAGASSGIGAATAIELAAAGF---PVALGARRV   44 (274)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            3457999999999999999999999987   777777753

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=98.20  E-value=4.1e-06  Score=55.12  Aligned_cols=36  Identities=17%  Similarity=0.397  Sum_probs=31.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++++++||||+|+||.+++++|+++|+   .|+...|+
T Consensus         5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~---~vvi~~~~   40 (261)
T PRK08936          5 LEGKVVVITGGSTGLGRAMAVRFGKEKA---KVVINYRS   40 (261)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCC
Confidence            6789999999999999999999999987   66666664

>PRK05693 short chain dehydrogenase; Provisional

Probab=98.19  E-value=3.5e-06  Score=55.85  Aligned_cols=34  Identities=18%  Similarity=0.321  Sum_probs=30.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+++||||+|+||+++++.|+++|+   .|++++|+.
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~---~V~~~~r~~   35 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY---EVWATARKA   35 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6899999999999999999999987   788888864

>PRK09242 tropinone reductase; Provisional

Probab=98.19  E-value=4.2e-06  Score=54.88  Aligned_cols=37  Identities=14%  Similarity=0.361  Sum_probs=33.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||+++++.|+++|+   .|+.++|+.
T Consensus         7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~---~v~~~~r~~   43 (257)
T PRK09242          7 LDGQTALITGASKGIGLAIAREFLGLGA---DVLIVARDA   43 (257)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            5789999999999999999999999988   788888864

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=98.18  E-value=7.3e-06  Score=54.16  Aligned_cols=37  Identities=5%  Similarity=-0.059  Sum_probs=32.2

Q ss_pred             ccCcEEEEEcCC--ChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGT--GFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~t--G~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+  +.||.+++++|+++|.   .|+..+|+.
T Consensus         8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~---~v~l~~r~~   46 (258)
T PRK07533          8 LAGKRGLVVGIANEQSIAWGCARAFRALGA---ELAVTYLND   46 (258)
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCC---EEEEEeCCh
Confidence            578999999998  5999999999999987   777777764

>PRK06181 short chain dehydrogenase; Provisional

Probab=98.18  E-value=3.8e-06  Score=55.17  Aligned_cols=35  Identities=26%  Similarity=0.457  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++||||+|+||.+++++|++.|+   .|++++|+.
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~---~Vi~~~r~~   35 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGA---QLVLAARNE   35 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            36899999999999999999999987   788888864

>PRK08303 short chain dehydrogenase; Provisional

Probab=98.18  E-value=9.3e-06  Score=55.35  Aligned_cols=37  Identities=19%  Similarity=0.295  Sum_probs=33.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||++.||.++++.|++.|.   .|++++|+.
T Consensus         6 l~~k~~lITGgs~GIG~aia~~la~~G~---~Vv~~~r~~   42 (305)
T PRK08303          6 LRGKVALVAGATRGAGRGIAVELGAAGA---TVYVTGRST   42 (305)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeccc
Confidence            5789999999999999999999999987   788888863

>PRK05872 short chain dehydrogenase; Provisional

Probab=98.17  E-value=4.7e-06  Score=56.18  Aligned_cols=37  Identities=22%  Similarity=0.264  Sum_probs=33.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.++++.|.+.|+   .|++++|+.
T Consensus         7 l~gk~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~   43 (296)
T PRK05872          7 LAGKVVVVTGAARGIGAELARRLHARGA---KLALVDLEE   43 (296)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999987   788888854

>PLN02780 ketoreductase/ oxidoreductase

Probab=98.17  E-value=2.5e-06  Score=58.54  Aligned_cols=37  Identities=30%  Similarity=0.288  Sum_probs=33.1

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .|+.++||||+|+||.+++++|+++|.   .|+.++|+++
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~---~Vil~~R~~~   88 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL---NLVLVARNPD   88 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC---CEEEEECCHH
Confidence            479999999999999999999999988   7888888653

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=98.17  E-value=4.2e-06  Score=54.39  Aligned_cols=35  Identities=20%  Similarity=0.341  Sum_probs=29.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +++++++||||+|+||.+++++|+++|+   .|+++.+
T Consensus         4 ~~~~~~lItG~s~~iG~~la~~l~~~g~---~v~~~~~   38 (247)
T PRK12935          4 LNGKVAIVTGGAKGIGKAITVALAQEGA---KVVINYN   38 (247)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCC---EEEEEcC
Confidence            4679999999999999999999999987   5665444

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=98.17  E-value=4.9e-06  Score=54.08  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=28.8

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      ++|.++||||+|+||++++++|++.|+   .|++..
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~---~vv~~~   34 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGF---KVVAGC   34 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC---EEEEEc
Confidence            578999999999999999999999987   566543

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.16  E-value=4.7e-06  Score=54.05  Aligned_cols=37  Identities=19%  Similarity=0.404  Sum_probs=32.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.++++.|+++|+   .|+.++|+.
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~---~vi~~~r~~   39 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGA---KLALIDLNQ   39 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5688999999999999999999999987   788888764

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=98.16  E-value=3e-06  Score=56.49  Aligned_cols=33  Identities=33%  Similarity=0.713  Sum_probs=27.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +|+|||||||||++++++|++.+... .|++++|
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~-~v~~~~~   33 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDA-EVIVLDK   33 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCC-EEEEecC
Confidence            48999999999999999999986322 6777765

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=98.15  E-value=5.1e-06  Score=54.81  Aligned_cols=37  Identities=11%  Similarity=0.164  Sum_probs=32.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.+++++||||+|+||.+++++|++.|+   .|+++.|+.
T Consensus         8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~---~vv~~~~~~   44 (265)
T PRK07097          8 LKGKIALITGASYGIGFAIAKAYAKAGA---TIVFNDINQ   44 (265)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCH
Confidence            5689999999999999999999999987   777777754

>PRK06198 short chain dehydrogenase; Provisional

Probab=98.15  E-value=4.2e-06  Score=54.78  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=32.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcce-EEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKN-IYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~-V~~l~r~~   63 (82)
                      +++++++||||+|+||++++++|++.|.   . |+++.|+.
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~G~---~~V~~~~r~~   41 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAERGA---AGLVICGRNA   41 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCC---CeEEEEcCCH
Confidence            5789999999999999999999999987   5 88888864

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=98.14  E-value=3.4e-06  Score=56.34  Aligned_cols=45  Identities=20%  Similarity=0.276  Sum_probs=31.1

Q ss_pred             EEEcCCChHHHHHHHHHHHhCCCcceEEEEe-CCCCCccHHHHHHHHHh
Q psy16528         30 FVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM-RPKHGQDINGRLAEIIN   77 (82)
Q Consensus        30 lItG~tG~iG~~i~~~l~~~g~~~~~V~~l~-r~~~~~~~~~~~~~~~~   77 (82)
                      +||||+||||+++++.|++.|+   .|+.+. +..-+....+.+.++++
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~---~v~~~~~~~~~Dl~~~~~l~~~~~   46 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGF---TNLVLRTHKELDLTRQADVEAFFA   46 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCC---cEEEeeccccCCCCCHHHHHHHHh
Confidence            6999999999999999999987   344333 33334444555555554

>PRK07109 short chain dehydrogenase; Provisional

Probab=98.14  E-value=5.7e-06  Score=56.99  Aligned_cols=37  Identities=22%  Similarity=0.361  Sum_probs=33.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus         6 l~~k~vlITGas~gIG~~la~~la~~G~---~Vvl~~R~~   42 (334)
T PRK07109          6 IGRQVVVITGASAGVGRATARAFARRGA---KVVLLARGE   42 (334)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            5678999999999999999999999988   788888864

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.14  E-value=7e-06  Score=55.73  Aligned_cols=37  Identities=16%  Similarity=0.117  Sum_probs=32.5

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+++++++||||+|+||.+++++|+++|.   .|++.++.
T Consensus         9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga---~Vv~~~~~   45 (306)
T PRK07792          9 DLSGKVAVVTGAAAGLGRAEALGLARLGA---TVVVNDVA   45 (306)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEecCC
Confidence            37889999999999999999999999987   67776664

>PRK07677 short chain dehydrogenase; Provisional

Probab=98.13  E-value=6e-06  Score=54.04  Aligned_cols=35  Identities=29%  Similarity=0.525  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +|+++||||+|+||.++++.|+++|+   .|++++|+.
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~---~Vi~~~r~~   35 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA---NVVITGRTK   35 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            57899999999999999999999987   788888864

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=98.12  E-value=4.5e-06  Score=55.00  Aligned_cols=36  Identities=6%  Similarity=0.063  Sum_probs=32.1

Q ss_pred             ccCcEEEEEcCC--ChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGT--GFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~t--G~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|+++||||+  +.||.+++++|+++|.   .|+...|+
T Consensus         5 l~~k~~lItGas~~~gIG~a~a~~la~~G~---~Vi~~~r~   42 (252)
T PRK06079          5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGA---TVIYTYQN   42 (252)
T ss_pred             cCCCEEEEeCCCCCCchHHHHHHHHHHCCC---EEEEecCc
Confidence            678999999999  7999999999999988   77777775

>PRK12743 oxidoreductase; Provisional

Probab=98.12  E-value=6.8e-06  Score=53.98  Aligned_cols=34  Identities=18%  Similarity=0.118  Sum_probs=29.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++++||||+|+||.+++++|++.|+   .|+.+.+.
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~---~V~~~~~~   35 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGF---DIGITWHS   35 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCC
Confidence            57899999999999999999999988   67666543

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=98.11  E-value=7.4e-06  Score=53.80  Aligned_cols=36  Identities=17%  Similarity=0.105  Sum_probs=31.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++++++||||+|+||.+++++|++.|+   .|+.+++.
T Consensus         8 l~~k~~lItG~~~gIG~a~a~~l~~~G~---~vv~~~~~   43 (253)
T PRK08993          8 LEGKVAVVTGCDTGLGQGMALGLAEAGC---DIVGINIV   43 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEecCc
Confidence            6789999999999999999999999988   66666654

>KOG1430|consensus

Probab=98.10  E-value=6.7e-06  Score=57.84  Aligned_cols=39  Identities=36%  Similarity=0.555  Sum_probs=32.9

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++.+++||||+||+|.+++.+|++.+. ..+|+.++..+.
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~-~~~irv~D~~~~   41 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENEL-KLEIRVVDKTPT   41 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhccc-ccEEEEeccCcc
Confidence            357899999999999999999999973 348888887654

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=98.09  E-value=7.3e-06  Score=54.77  Aligned_cols=36  Identities=8%  Similarity=0.118  Sum_probs=31.8

Q ss_pred             ccCcEEEEEcCCC--hHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTG--FMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG--~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|.++||||++  .||.+++++|+++|+   .|+...|+
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga---~V~~~~r~   42 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGA---ELAFTYQG   42 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhCCC---EEEEecCc
Confidence            6789999999996  999999999999988   67777775

>PRK06139 short chain dehydrogenase; Provisional

Probab=98.09  E-value=7.7e-06  Score=56.43  Aligned_cols=37  Identities=22%  Similarity=0.348  Sum_probs=33.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.+++++|+++|+   .|+.++|+.
T Consensus         5 l~~k~vlITGAs~GIG~aia~~la~~G~---~Vvl~~R~~   41 (330)
T PRK06139          5 LHGAVVVITGASSGIGQATAEAFARRGA---RLVLAARDE   41 (330)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            5678999999999999999999999988   788888864

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=98.08  E-value=1.4e-05  Score=52.94  Aligned_cols=36  Identities=8%  Similarity=0.099  Sum_probs=31.5

Q ss_pred             ccCcEEEEEcCC--ChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGT--GFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~t--G~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|+++||||+  +.||.+++++|+++|.   .|+...|.
T Consensus         5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~---~v~~~~r~   42 (257)
T PRK08594          5 LEGKTYVVMGVANKRSIAWGIARSLHNAGA---KLVFTYAG   42 (257)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCC---EEEEecCc
Confidence            568999999997  8999999999999988   67777664

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=98.08  E-value=4.1e-06  Score=57.48  Aligned_cols=34  Identities=44%  Similarity=0.683  Sum_probs=29.0

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        29 ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ||||||+|.||+.++++|++.++  ..++.++|++.
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p--~~lil~d~~E~   34 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGP--KKLILFDRDEN   34 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB---SEEEEEES-HH
T ss_pred             CEEEccccHHHHHHHHHHHhcCC--CeEEEeCCChh
Confidence            79999999999999999999965  48999998754

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=98.07  E-value=1.9e-05  Score=52.27  Aligned_cols=36  Identities=14%  Similarity=0.184  Sum_probs=30.4

Q ss_pred             ccCcEEEEEcCC--ChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGT--GFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~t--G~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|+++||||+  +.||.+++++|++.|+   .|+...|+
T Consensus         4 l~~k~~lItGas~~~GIG~aia~~la~~G~---~v~~~~~~   41 (258)
T PRK07370          4 LTGKKALVTGIANNRSIAWGIAQQLHAAGA---ELGITYLP   41 (258)
T ss_pred             cCCcEEEEeCCCCCCchHHHHHHHHHHCCC---EEEEEecC
Confidence            568999999986  7999999999999988   66666554

>PRK06953 short chain dehydrogenase; Provisional

Probab=98.07  E-value=6.6e-06  Score=53.00  Aligned_cols=34  Identities=15%  Similarity=0.257  Sum_probs=30.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++++||||+|+||++++++|++.|+   .|++++|+.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~---~v~~~~r~~   35 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW---RVIATARDA   35 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC---EEEEEECCH
Confidence            5799999999999999999999987   788888764

>PRK06125 short chain dehydrogenase; Provisional

Probab=98.07  E-value=8.8e-06  Score=53.46  Aligned_cols=38  Identities=18%  Similarity=0.292  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++|||++|.||.++++.|++.|.   .|++++|+..
T Consensus         5 ~~~k~vlItG~~~giG~~ia~~l~~~G~---~V~~~~r~~~   42 (259)
T PRK06125          5 LAGKRVLITGASKGIGAAAAEAFAAEGC---HLHLVARDAD   42 (259)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence            5689999999999999999999999987   7888888643

>KOG1205|consensus

Probab=98.07  E-value=1.1e-05  Score=55.20  Aligned_cols=41  Identities=22%  Similarity=0.361  Sum_probs=33.5

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +.+.+|.|+||||+..||.+++.+|.++|.   .++.+.|....
T Consensus         8 e~~~~kvVvITGASsGIG~~lA~~la~~G~---~l~lvar~~rr   48 (282)
T KOG1205|consen    8 ERLAGKVVLITGASSGIGEALAYELAKRGA---KLVLVARRARR   48 (282)
T ss_pred             HHhCCCEEEEeCCCcHHHHHHHHHHHhCCC---ceEEeehhhhh
Confidence            347899999999999999999999999987   55555554443

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=98.06  E-value=6e-06  Score=55.31  Aligned_cols=33  Identities=33%  Similarity=0.562  Sum_probs=27.2

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        29 ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+||||+||||+++++.|.+.|+.  .|++++|..
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~--~v~~~~~~~   33 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGIT--DILVVDNLR   33 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCc--eEEEEecCC
Confidence            689999999999999999999752  466766643

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK05650 short chain dehydrogenase; Provisional

Probab=98.05  E-value=9.6e-06  Score=53.65  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=30.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+++||||+|+||.+++++|+++|.   .|++++|+.
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~---~V~~~~r~~   34 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW---RLALADVNE   34 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            4799999999999999999999987   777777754

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=98.05  E-value=1.1e-05  Score=63.58  Aligned_cols=47  Identities=30%  Similarity=0.482  Sum_probs=36.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCC-CcceEEEEeCCCCCccHHHHH
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCP-GIKNIYLLMRPKHGQDINGRL   72 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~-~~~~V~~l~r~~~~~~~~~~~   72 (82)
                      .++|+||||+||+|++++++|++.+. ....|+++.|.........++
T Consensus       971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l 1018 (1389)
T TIGR03443       971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERL 1018 (1389)
T ss_pred             CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHH
Confidence            47899999999999999999998861 233899999976544444444

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK07791 short chain dehydrogenase; Provisional

Probab=98.05  E-value=1.2e-05  Score=54.12  Aligned_cols=36  Identities=19%  Similarity=0.209  Sum_probs=31.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++++++||||++.||.+++++|++.|.   .|++++|+
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~---~vii~~~~   39 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGA---RVVVNDIG   39 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEeeCC
Confidence            6789999999999999999999999987   67766664

>PRK09620 hypothetical protein; Provisional

Probab=98.04  E-value=1.2e-05  Score=53.35  Aligned_cols=35  Identities=23%  Similarity=0.560  Sum_probs=29.8

Q ss_pred             ccCcEEEEEcCC----------------ChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGT----------------GFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~t----------------G~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ++|++|+||+|.                ||+|+++++.|+++|+   .|+.+++
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga---~V~li~g   51 (229)
T PRK09620          1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGA---HVIYLHG   51 (229)
T ss_pred             CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCC---eEEEEeC
Confidence            468999999886                9999999999999998   5665554

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=98.04  E-value=9.5e-06  Score=54.25  Aligned_cols=31  Identities=35%  Similarity=0.659  Sum_probs=27.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +|+||||+|+||++++++|+++|+   .|++++|
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~---~V~~~~~   31 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGH---EVVVLDN   31 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCC---eEEEEeC
Confidence            489999999999999999999987   6666654

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=98.03  E-value=1.2e-05  Score=49.32  Aligned_cols=34  Identities=26%  Similarity=0.490  Sum_probs=29.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      |+++||||++.||.+++++|+++|.  ..|+.+.|+
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~--~~v~~~~r~   34 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGA--RVVILTSRS   34 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTT--EEEEEEESS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCc--eEEEEeeec
Confidence            5899999999999999999999954  267788887

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=98.03  E-value=1.1e-05  Score=60.50  Aligned_cols=38  Identities=26%  Similarity=0.353  Sum_probs=34.1

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|+++||||+|+||++++++|++.|.   .|++++|+.
T Consensus       411 ~l~gkvvLVTGasggIG~aiA~~La~~Ga---~Vvi~~r~~  448 (676)
T TIGR02632       411 TLARRVAFVTGGAGGIGRETARRLAAEGA---HVVLADLNL  448 (676)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhCCC---EEEEEeCCH
Confidence            36789999999999999999999999987   788888864

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=98.03  E-value=1e-05  Score=53.20  Aligned_cols=34  Identities=21%  Similarity=0.291  Sum_probs=30.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+++||||+|.||++++++|+++|+   .|+.++|++
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~---~V~~~~r~~   34 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA---RVVISSRNE   34 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            4799999999999999999999988   788888864

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=98.03  E-value=1.2e-05  Score=51.92  Aligned_cols=32  Identities=25%  Similarity=0.391  Sum_probs=29.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      |+++||||+|+||.+++++|++.|+   .|+++.|
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~---~v~~~~r   32 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGY---RVAANCG   32 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC---EEEEEeC
Confidence            5799999999999999999999987   7777777

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK06720 hypothetical protein; Provisional

Probab=98.03  E-value=1.6e-05  Score=50.37  Aligned_cols=37  Identities=16%  Similarity=0.163  Sum_probs=33.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++++.++||||+++||..+++.|.+.|+   .|++.+|+.
T Consensus        14 l~gk~~lVTGa~~GIG~aia~~l~~~G~---~V~l~~r~~   50 (169)
T PRK06720         14 LAGKVAIVTGGGIGIGRNTALLLAKQGA---KVIVTDIDQ   50 (169)
T ss_pred             cCCCEEEEecCCChHHHHHHHHHHHCCC---EEEEEECCH
Confidence            6789999999999999999999999987   788888754

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=98.03  E-value=1.3e-05  Score=51.77  Aligned_cols=34  Identities=18%  Similarity=0.232  Sum_probs=30.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++++||||+|+||.+++++|++.|+   .|+++.|+.
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~---~vi~~~r~~   36 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGY---RVIATYFSG   36 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCc
Confidence            5899999999999999999999987   788888864

>PRK05865 hypothetical protein; Provisional

Probab=98.02  E-value=1e-05  Score=62.20  Aligned_cols=34  Identities=26%  Similarity=0.466  Sum_probs=30.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|+||||+||||++++++|+++|+   .|++++|..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~---~Vv~l~R~~   34 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGH---EVVGIARHR   34 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC---EEEEEECCc
Confidence            4799999999999999999999988   788888853

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=98.02  E-value=9.9e-06  Score=55.97  Aligned_cols=34  Identities=32%  Similarity=0.642  Sum_probs=28.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +++|||||.||||+++++++++..++ ..|++++.
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d-~~v~~~Dk   34 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPD-DHVVNLDK   34 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCC-ceEEEEec
Confidence            57999999999999999999999764 35666654

>PRK07831 short chain dehydrogenase; Provisional

Probab=98.01  E-value=1.2e-05  Score=52.91  Aligned_cols=38  Identities=16%  Similarity=0.254  Sum_probs=32.6

Q ss_pred             hccCcEEEEEcCCC-hHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTG-FMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG-~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++++++||||+| .||.++++.|+++|+   .|++.+|+.
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~---~V~~~~~~~   52 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGA---RVVISDIHE   52 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            46689999999997 699999999999987   677777754

>PRK07832 short chain dehydrogenase; Provisional

Probab=98.01  E-value=1.2e-05  Score=53.26  Aligned_cols=34  Identities=24%  Similarity=0.410  Sum_probs=30.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++++||||+|+||.+++++|+++|+   .|+.++|+.
T Consensus         1 k~vlItGas~giG~~la~~la~~G~---~vv~~~r~~   34 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA---ELFLTDRDA   34 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            4799999999999999999999987   777788754

>PRK07201 short chain dehydrogenase; Provisional

Probab=98.01  E-value=1.3e-05  Score=58.93  Aligned_cols=37  Identities=19%  Similarity=0.393  Sum_probs=33.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus       369 ~~~k~vlItGas~giG~~la~~l~~~G~---~V~~~~r~~  405 (657)
T PRK07201        369 LVGKVVLITGASSGIGRATAIKVAEAGA---TVFLVARNG  405 (657)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            5689999999999999999999999987   888888864

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=98.01  E-value=1.8e-05  Score=51.19  Aligned_cols=35  Identities=29%  Similarity=0.588  Sum_probs=27.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      |+++||||+|+||++++++|++++.++ .|....|.
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~-~v~~~~~~   35 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDA-TVHATYRH   35 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCC-EEEEEccC
Confidence            579999999999999999999986433 45555553

>PRK06123 short chain dehydrogenase; Provisional

Probab=98.00  E-value=1.6e-05  Score=51.59  Aligned_cols=33  Identities=12%  Similarity=0.092  Sum_probs=27.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +++++||||+|+||.+++++|+++|+   .|+...+
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~---~vv~~~~   34 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGY---AVCLNYL   34 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC---eEEEecC
Confidence            46899999999999999999999987   5555443

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=98.00  E-value=1.5e-05  Score=59.20  Aligned_cols=27  Identities=19%  Similarity=0.295  Sum_probs=24.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCP   51 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~   51 (82)
                      +.|+||||||+||||+++++.|.++|+
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~  405 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEKQGI  405 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHhCCC
Confidence            357899999999999999999999877

>PRK08862 short chain dehydrogenase; Provisional

Probab=98.00  E-value=1.3e-05  Score=52.47  Aligned_cols=38  Identities=11%  Similarity=0.248  Sum_probs=33.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||++.||.++++.|+++|.   .|+++.|+..
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~---~V~~~~r~~~   40 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGA---TLILCDQDQS   40 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCC---EEEEEcCCHH
Confidence            5689999999999999999999999988   7888888643

>PRK05884 short chain dehydrogenase; Provisional

Probab=97.99  E-value=1.5e-05  Score=51.72  Aligned_cols=34  Identities=24%  Similarity=0.370  Sum_probs=30.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++++||||+|+||+++++.|+++|+   .|+.++|+.
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~---~v~~~~r~~   34 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGH---KVTLVGARR   34 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            3699999999999999999999987   788888753

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.99  E-value=1.3e-05  Score=53.81  Aligned_cols=38  Identities=16%  Similarity=0.328  Sum_probs=34.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++|.++||||++.||.++++.|.+.|+   +|+...|+.+
T Consensus         4 ~~~kv~lITGASSGiG~A~A~~l~~~G~---~vvl~aRR~d   41 (246)
T COG4221           4 LKGKVALITGASSGIGEATARALAEAGA---KVVLAARREE   41 (246)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHHCCC---eEEEEeccHH
Confidence            4568999999999999999999999998   8999998654

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.98  E-value=1.9e-05  Score=52.79  Aligned_cols=38  Identities=3%  Similarity=0.013  Sum_probs=32.2

Q ss_pred             hhccCcEEEEEcCC--ChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         22 EFYQNRSVFVTGGT--GFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        22 ~~~~~~~ilItG~t--G~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ..+++|+++||||+  +.||.++++.|+++|+   .|+...|+
T Consensus         6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~---~V~l~~r~   45 (272)
T PRK08159          6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGA---ELAFTYQG   45 (272)
T ss_pred             ccccCCEEEEECCCCCCcHHHHHHHHHHHCCC---EEEEEcCc
Confidence            34678999999997  8999999999999988   67766664

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.97  E-value=1.5e-05  Score=52.24  Aligned_cols=36  Identities=17%  Similarity=0.308  Sum_probs=31.8

Q ss_pred             ccCcEEEEEcCCC--hHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTG--FMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG--~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++++++||||+|  .||.+++++|+++|+   .|+++.|+
T Consensus         3 l~~k~vlItGas~~~giG~~la~~l~~~G~---~vi~~~r~   40 (256)
T PRK12748          3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI---DIFFTYWS   40 (256)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC---cEEEEcCC
Confidence            5678999999995  799999999999987   78888876

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=97.97  E-value=1.9e-05  Score=53.83  Aligned_cols=36  Identities=19%  Similarity=0.238  Sum_probs=31.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhC-CCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSC-PGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g-~~~~~V~~l~r~~   63 (82)
                      ++++++||||++.||.++++.|+++| +   .|+++.|+.
T Consensus         2 ~~k~vlITGas~GIG~aia~~L~~~G~~---~V~l~~r~~   38 (314)
T TIGR01289         2 QKPTVIITGASSGLGLYAAKALAATGEW---HVIMACRDF   38 (314)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCC---EEEEEeCCH
Confidence            36799999999999999999999998 7   788888754

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.97  E-value=1.7e-05  Score=52.51  Aligned_cols=36  Identities=8%  Similarity=0.099  Sum_probs=30.4

Q ss_pred             ccCcEEEEEcC--CChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGG--TGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~--tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++++++||||  ++.||.++++.|+++|.   .|+...|.
T Consensus         4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~---~v~~~~~~   41 (261)
T PRK08690          4 LQGKKILITGMISERSIAYGIAKACREQGA---ELAFTYVV   41 (261)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHCCC---EEEEEcCc
Confidence            67899999997  67999999999999988   66666553

>TIGR02415 23BDH acetoin reductases

Probab=97.97  E-value=1.9e-05  Score=51.43  Aligned_cols=34  Identities=24%  Similarity=0.315  Sum_probs=30.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+++||||+|+||.+++++|++.|.   .|+.+.|+.
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~---~v~~~~r~~   34 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGF---AVAVADLNE   34 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5799999999999999999999987   788888753

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK07578 short chain dehydrogenase; Provisional

Probab=97.96  E-value=3.6e-05  Score=48.79  Aligned_cols=33  Identities=21%  Similarity=0.439  Sum_probs=29.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+++||||+|+||.+++++|.++ .   .|+.++|+.
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~---~vi~~~r~~   33 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-H---EVITAGRSS   33 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-C---cEEEEecCC
Confidence            47999999999999999999988 5   788888864

>PRK05855 short chain dehydrogenase; Validated

Probab=97.96  E-value=1.3e-05  Score=57.53  Aligned_cols=37  Identities=16%  Similarity=0.192  Sum_probs=33.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||++++++|.++|+   .|+.++|+.
T Consensus       313 ~~~~~~lv~G~s~giG~~~a~~l~~~G~---~v~~~~r~~  349 (582)
T PRK05855        313 FSGKLVVVTGAGSGIGRETALAFAREGA---EVVASDIDE  349 (582)
T ss_pred             CCCCEEEEECCcCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5678999999999999999999999988   788888864

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.96  E-value=1.9e-05  Score=52.30  Aligned_cols=36  Identities=8%  Similarity=0.189  Sum_probs=31.2

Q ss_pred             ccCcEEEEEcCCC--hHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTG--FMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG--~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|.++||||++  .||.++++.|.++|+   .|+...|+
T Consensus         6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~---~v~~~~r~   43 (260)
T PRK06603          6 LQGKKGLITGIANNMSISWAIAQLAKKHGA---ELWFTYQS   43 (260)
T ss_pred             cCCcEEEEECCCCCcchHHHHHHHHHHcCC---EEEEEeCc
Confidence            5789999999997  899999999999987   67766665

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.96  E-value=2.3e-05  Score=55.65  Aligned_cols=37  Identities=24%  Similarity=0.324  Sum_probs=32.9

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+++++++||||+|+||.++++.|.++|.   .|++++|+
T Consensus       207 ~~~g~~vlItGasggIG~~la~~l~~~Ga---~vi~~~~~  243 (450)
T PRK08261        207 PLAGKVALVTGAARGIGAAIAEVLARDGA---HVVCLDVP  243 (450)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCC
Confidence            35789999999999999999999999987   78888774

>PRK06484 short chain dehydrogenase; Validated

Probab=97.95  E-value=1.3e-05  Score=57.48  Aligned_cols=38  Identities=18%  Similarity=0.347  Sum_probs=34.0

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+|.++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus       266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~---~V~~~~r~~  303 (520)
T PRK06484        266 AESPRVVAITGGARGIGRAVADRFAAAGD---RLLIIDRDA  303 (520)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            45789999999999999999999999987   788888853

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.95  E-value=2.1e-05  Score=52.77  Aligned_cols=37  Identities=3%  Similarity=0.066  Sum_probs=31.9

Q ss_pred             ccCcEEEEEcCC--ChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGT--GFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~t--G~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|.++||||+  +.||.++++.|+++|.   .|+...|+.
T Consensus         3 l~~k~~lItGas~~~GIG~aiA~~la~~G~---~Vil~~r~~   41 (274)
T PRK08415          3 MKGKKGLIVGVANNKSIAYGIAKACFEQGA---ELAFTYLNE   41 (274)
T ss_pred             cCCcEEEEECCCCCCCHHHHHHHHHHHCCC---EEEEEecCH
Confidence            468999999997  7999999999999988   777777753

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.94  E-value=2e-05  Score=55.06  Aligned_cols=41  Identities=24%  Similarity=0.368  Sum_probs=33.3

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+++++|+||||+|++|+.++++|.+++ ++..++.+.|+..
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~-gv~~lilv~R~~~  192 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKT-GVAELLLVARQQE  192 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhC-CCCEEEEEcCCHH
Confidence            3678999999999999999999998652 3447888888643

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=97.94  E-value=2e-05  Score=51.22  Aligned_cols=31  Identities=13%  Similarity=0.123  Sum_probs=26.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      ++++||||+|+||.++++.|+++|+   .|+.+.
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~---~v~~~~   33 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGW---SVGINY   33 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCC---EEEEEe
Confidence            6899999999999999999999987   555543

>PRK07069 short chain dehydrogenase; Validated

Probab=97.94  E-value=1.8e-05  Score=51.35  Aligned_cols=32  Identities=19%  Similarity=0.477  Sum_probs=29.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++||||+|+||.++++.|+++|+   .|+.++|+
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~---~v~~~~r~   32 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA---KVFLTDIN   32 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC---EEEEEeCC
Confidence            389999999999999999999987   78888886

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.93  E-value=3.1e-05  Score=51.15  Aligned_cols=37  Identities=11%  Similarity=0.100  Sum_probs=32.3

Q ss_pred             ccCcEEEEEcC--CChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGG--TGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~--tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||  ++.||.+++++|+++|.   .|++..|+.
T Consensus         5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~---~v~l~~r~~   43 (256)
T PRK07889          5 LEGKRILVTGVITDSSIAFHVARVAQEQGA---EVVLTGFGR   43 (256)
T ss_pred             ccCCEEEEeCCCCcchHHHHHHHHHHHCCC---EEEEecCcc
Confidence            56899999999  89999999999999988   788777653

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=97.93  E-value=2e-05  Score=50.94  Aligned_cols=30  Identities=20%  Similarity=0.218  Sum_probs=26.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL   59 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l   59 (82)
                      ++++||||+|+||.+++++|+++|+   .|+++
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~---~v~~~   31 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGY---TVAVN   31 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC---EEEEE
Confidence            5799999999999999999999987   56553

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.93  E-value=2.6e-05  Score=51.96  Aligned_cols=36  Identities=11%  Similarity=0.225  Sum_probs=31.0

Q ss_pred             ccCcEEEEEcCCC--hHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTG--FMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG--~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|+++||||++  .||.++++.|+++|+   .|+...|+
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~---~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGA---ELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCC---EEEEEecc
Confidence            5789999999985  899999999999988   66666665

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=97.92  E-value=6.6e-05  Score=45.52  Aligned_cols=36  Identities=28%  Similarity=0.400  Sum_probs=29.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++++||||+|++|.+++++|+++|.  ..|+.+.|+..
T Consensus         1 ~~~li~Ga~~~iG~~~~~~l~~~g~--~~v~~~~r~~~   36 (180)
T smart00822        1 GTYLITGGLGGLGLELARWLAERGA--RHLVLLSRSGP   36 (180)
T ss_pred             CEEEEEcCCChHHHHHHHHHHHhhC--CeEEEEeCCCC
Confidence            4789999999999999999999874  25677777644

It uses NADPH to reduce the keto group to a hydroxy group.

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.92  E-value=2.1e-05  Score=51.10  Aligned_cols=32  Identities=34%  Similarity=0.518  Sum_probs=29.8

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        29 ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|+||||.+|+++++.|++.+.   .|.++.|+.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~---~V~~l~R~~   32 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF---SVRALVRDP   32 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG---CEEEEESSS
T ss_pred             CEEECCccHHHHHHHHHHHhCCC---CcEEEEecc
Confidence            78999999999999999999876   899999976

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=97.92  E-value=1.8e-05  Score=52.31  Aligned_cols=33  Identities=18%  Similarity=0.215  Sum_probs=28.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +.++||||+|+||.+++++|+++|+   .|+++.|.
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~---~V~~~~~~   34 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGY---RVVLHYHR   34 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCC---eEEEEcCC
Confidence            4799999999999999999999988   67776553

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=97.92  E-value=1.9e-05  Score=50.75  Aligned_cols=32  Identities=22%  Similarity=0.411  Sum_probs=28.8

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        29 ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|||++|+||++++++|+++|+   .|+.++|+.
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~---~v~~~~r~~   32 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGA---KVIITYRSS   32 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            58999999999999999999987   788888864

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.91  E-value=6.1e-05  Score=49.02  Aligned_cols=38  Identities=18%  Similarity=0.364  Sum_probs=32.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||++.||.++++.|.+.|.   .|+++.|...
T Consensus         3 ~~~~~ilITGas~GiG~aia~~l~~~G~---~v~~~~~~~~   40 (251)
T COG1028           3 LSGKVALVTGASSGIGRAIARALAREGA---RVVVAARRSE   40 (251)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---eEEEEcCCCc
Confidence            5678999999999999999999999987   6676666544

>PRK08324 short chain dehydrogenase; Validated

Probab=97.90  E-value=2.3e-05  Score=58.67  Aligned_cols=38  Identities=21%  Similarity=0.295  Sum_probs=34.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.+++++||||+|+||.++++.|+++|.   .|++++|+..
T Consensus       420 l~gk~vLVTGasggIG~~la~~L~~~Ga---~Vvl~~r~~~  457 (681)
T PRK08324        420 LAGKVALVTGAAGGIGKATAKRLAAEGA---CVVLADLDEE  457 (681)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcC---EEEEEeCCHH
Confidence            5789999999999999999999999987   7888888653

>PRK06484 short chain dehydrogenase; Validated

Probab=97.88  E-value=2.5e-05  Score=56.12  Aligned_cols=38  Identities=26%  Similarity=0.416  Sum_probs=33.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++++++||||+++||.+++++|.++|+   .|+.+.|+..
T Consensus         3 ~~~k~~lITGas~gIG~aia~~l~~~G~---~V~~~~r~~~   40 (520)
T PRK06484          3 AQSRVVLVTGAAGGIGRAACQRFARAGD---QVVVADRNVE   40 (520)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            4689999999999999999999999988   7888887543

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.82  E-value=4.8e-05  Score=50.41  Aligned_cols=35  Identities=9%  Similarity=0.128  Sum_probs=29.7

Q ss_pred             ccCcEEEEEcC--CChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGG--TGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~--tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +++++++||||  ++.||.+++++|+++|+   .|+...|
T Consensus         4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~---~v~~~~~   40 (260)
T PRK06997          4 LAGKRILITGLLSNRSIAYGIAKACKREGA---ELAFTYV   40 (260)
T ss_pred             cCCcEEEEeCCCCCCcHHHHHHHHHHHCCC---eEEEEcc
Confidence            57899999996  67999999999999988   6666554

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.82  E-value=4.4e-05  Score=50.24  Aligned_cols=34  Identities=21%  Similarity=0.394  Sum_probs=29.2

Q ss_pred             ccCcEEEEEcCCC--hHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         24 YQNRSVFVTGGTG--FMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        24 ~~~~~ilItG~tG--~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      +++|+++||||+|  .||.+++++|++.|.   .|++..
T Consensus         4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~---~vi~~~   39 (256)
T PRK12859          4 LKNKVAVVTGVSRLDGIGAAICKELAEAGA---DIFFTY   39 (256)
T ss_pred             cCCcEEEEECCCCCCChHHHHHHHHHHCCC---eEEEEe
Confidence            6789999999995  899999999999987   566553

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.82  E-value=1.9e-05  Score=51.43  Aligned_cols=37  Identities=14%  Similarity=0.295  Sum_probs=33.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCc
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQ   66 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~   66 (82)
                      |+|.|.||||-+|++|++..+.+|+   +|+++.|++...
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH---eVTAivRn~~K~   37 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH---EVTAIVRNASKL   37 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC---eeEEEEeChHhc
Confidence            5799999999999999999999999   999999987654

>KOG0725|consensus

Probab=97.81  E-value=4.2e-05  Score=51.78  Aligned_cols=40  Identities=20%  Similarity=0.321  Sum_probs=35.8

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      .|++|.++||||+..||++++.+|.+.|.   .|+...|+.+.
T Consensus         5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga---~v~i~~r~~~~   44 (270)
T KOG0725|consen    5 RLAGKVALVTGGSSGIGKAIALLLAKAGA---KVVITGRSEER   44 (270)
T ss_pred             cCCCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            47899999999999999999999999998   88888886543

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

Probab=97.80  E-value=2.9e-05  Score=53.58  Aligned_cols=36  Identities=28%  Similarity=0.302  Sum_probs=33.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +|+.||||-||+-|+++++.|++.|+   .|+++.|...
T Consensus         2 ~K~ALITGITGQDGsYLa~lLLekGY---~VhGi~Rrss   37 (345)
T COG1089           2 GKVALITGITGQDGSYLAELLLEKGY---EVHGIKRRSS   37 (345)
T ss_pred             CceEEEecccCCchHHHHHHHHhcCc---EEEEEeeccc
Confidence            57899999999999999999999999   9999998643

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=97.79  E-value=4e-05  Score=49.57  Aligned_cols=31  Identities=23%  Similarity=0.368  Sum_probs=27.4

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        29 ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++||||+|+||.++++.|+++|+   .|+++.|.
T Consensus         1 vlItGas~giG~~~a~~l~~~G~---~v~~~~~~   31 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGF---EICVHYHS   31 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCC---EEEEEeCC
Confidence            58999999999999999999987   67777764

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>KOG1431|consensus

Probab=97.77  E-value=0.0001  Score=49.68  Aligned_cols=52  Identities=17%  Similarity=0.275  Sum_probs=40.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCccHHHHHHHHHhC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINA   78 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~~~~~~~~~~~~   78 (82)
                      ++|+|||++|.+|++|.+.+.+++.+-..-+.......+....+..+++|+.
T Consensus         2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~skd~DLt~~a~t~~lF~~   53 (315)
T KOG1431|consen    2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSKDADLTNLADTRALFES   53 (315)
T ss_pred             ceEEEecCCchHHHHHHHHHHhcCCCCcceEEeccccccccchHHHHHHHhc
Confidence            6899999999999999999999986434444445555566667778888775

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=97.77  E-value=6e-05  Score=51.53  Aligned_cols=48  Identities=19%  Similarity=0.226  Sum_probs=38.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCccHHHHHHHHHhC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINA   78 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~~~~~~~~~~~~   78 (82)
                      |+|||||++|.+|.++++.|. .+.   +|++++|..-+....+.+.+++..
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~~~---~v~a~~~~~~Ditd~~~v~~~i~~   48 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-GEF---EVIATDRAELDITDPDAVLEVIRE   48 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-CCc---eEEeccCccccccChHHHHHHHHh
Confidence            359999999999999999988 435   899999987676666767666654

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.77  E-value=0.00017  Score=43.11  Aligned_cols=35  Identities=26%  Similarity=0.539  Sum_probs=30.1

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +|.|.|+||++|+.+++.|.+. +.+..+.++.++.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~h-p~~e~~~~~~~~~   35 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEH-PDFELVALVSSSR   35 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-STEEEEEEEESTT
T ss_pred             CEEEECCCCHHHHHHHHHHhcC-CCccEEEeeeecc
Confidence            5899999999999999999996 6777777777766

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK08309 short chain dehydrogenase; Provisional

Probab=97.73  E-value=7e-05  Score=47.81  Aligned_cols=33  Identities=21%  Similarity=0.348  Sum_probs=28.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+++||||+||+|. +++.|.++|+   .|.++.|++
T Consensus         1 m~vlVtGGtG~gg~-la~~L~~~G~---~V~v~~R~~   33 (177)
T PRK08309          1 MHALVIGGTGMLKR-VSLWLCEKGF---HVSVIARRE   33 (177)
T ss_pred             CEEEEECcCHHHHH-HHHHHHHCcC---EEEEEECCH
Confidence            46999999998876 9999999988   778778763

>PRK07041 short chain dehydrogenase; Provisional

Probab=97.67  E-value=6.5e-05  Score=48.33  Aligned_cols=31  Identities=19%  Similarity=0.374  Sum_probs=27.9

Q ss_pred             EEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         30 FVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        30 lItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +||||+|+||++++++|+++|+   .|+++.|+.
T Consensus         1 lItGas~~iG~~~a~~l~~~G~---~v~~~~r~~   31 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGA---RVTIASRSR   31 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5999999999999999999987   788888864

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.65  E-value=0.00015  Score=46.31  Aligned_cols=37  Identities=27%  Similarity=0.380  Sum_probs=32.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++|+||+|.+|+.+++.|.+.|.   .|+.++|+.
T Consensus        26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~---~V~l~~R~~   62 (194)
T cd01078          26 LKGKTAVVLGGTGPVGQRAAVLLAREGA---RVVLVGRDL   62 (194)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            5689999999999999999999999876   788888864

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=97.64  E-value=0.00015  Score=49.72  Aligned_cols=32  Identities=16%  Similarity=0.301  Sum_probs=29.2

Q ss_pred             ccCcEEEEEcC--CChHHHHHHHHHHHhCCCcceEEE
Q psy16528         24 YQNRSVFVTGG--TGFMGKVLVEKLLRSCPGIKNIYL   58 (82)
Q Consensus        24 ~~~~~ilItG~--tG~iG~~i~~~l~~~g~~~~~V~~   58 (82)
                      ++||+++||||  +..||.++++.|.+.|.   .|+.
T Consensus         7 l~gk~alITGa~~s~GIG~a~A~~la~~Ga---~Vv~   40 (303)
T PLN02730          7 LRGKRAFIAGVADDNGYGWAIAKALAAAGA---EILV   40 (303)
T ss_pred             CCCCEEEEeCCCCCCcHHHHHHHHHHHCCC---EEEE
Confidence            78999999999  79999999999999998   6665

>PRK05599 hypothetical protein; Provisional

Probab=97.62  E-value=0.0001  Score=48.43  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=28.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+++||||++.||.+++++|. +|.   .|+.++|+.+
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~---~Vil~~r~~~   34 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGE---DVVLAARRPE   34 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCC---EEEEEeCCHH
Confidence            579999999999999999998 476   7888888643

>KOG1372|consensus

Probab=97.58  E-value=0.00016  Score=49.48  Aligned_cols=51  Identities=24%  Similarity=0.340  Sum_probs=43.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCccHHHHHHHHHhCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAPL   80 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~~~~~~~~~~~~~~   80 (82)
                      .|..||||-||.=|+++++.|+..|+   +|..+.|..+... ..+++.++.+|.
T Consensus        28 rkvALITGItGQDGSYLaEfLL~KgY---eVHGiiRRsSsFN-T~RIeHlY~nP~   78 (376)
T KOG1372|consen   28 RKVALITGITGQDGSYLAEFLLSKGY---EVHGIIRRSSSFN-TARIEHLYSNPH   78 (376)
T ss_pred             ceEEEEecccCCCchHHHHHHHhCCc---eeeEEEeeccccc-hhhhhhhhcCch
Confidence            35779999999999999999999999   8999998755433 678888888775

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=97.57  E-value=0.00017  Score=51.41  Aligned_cols=36  Identities=28%  Similarity=0.495  Sum_probs=32.3

Q ss_pred             ccCcEEEEEcC----------------CChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGG----------------TGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~----------------tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++|++++||||                +|.+|.++++.|.++|.   .|+.++++
T Consensus       186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga---~V~~v~~~  237 (399)
T PRK05579        186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGA---DVTLVSGP  237 (399)
T ss_pred             cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCC---EEEEeCCC
Confidence            67999999999                99999999999999998   77777765

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=97.57  E-value=0.00046  Score=43.74  Aligned_cols=46  Identities=24%  Similarity=0.423  Sum_probs=34.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC-CCCccHHHHHHHH
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP-KHGQDINGRLAEI   75 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~-~~~~~~~~~~~~~   75 (82)
                      +++||||+|.||..+++.|.+++.  ..|+.+.|+ .......+.+.++
T Consensus         2 tylitGG~gglg~~la~~La~~~~--~~~il~~r~~~~~~~~~~~i~~l   48 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGA--RRLILLGRSGAPSAEAEAAIREL   48 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGSTTHHHHHHHH
T ss_pred             EEEEECCccHHHHHHHHHHHHcCC--CEEEEeccCCCccHHHHHHHHHH
Confidence            589999999999999999999963  488999998 3333444444444

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>KOG1208|consensus

Probab=97.56  E-value=0.00027  Score=48.94  Aligned_cols=37  Identities=22%  Similarity=0.256  Sum_probs=34.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.+++++||||+..||.++++.|.++|.   .|+...|+.
T Consensus        33 ~~~~~~vVTGansGIG~eta~~La~~Ga---~Vv~~~R~~   69 (314)
T KOG1208|consen   33 LSGKVALVTGATSGIGFETARELALRGA---HVVLACRNE   69 (314)
T ss_pred             CCCcEEEEECCCCchHHHHHHHHHhCCC---EEEEEeCCH
Confidence            5679999999999999999999999987   899999975

>KOG1201|consensus

Probab=97.55  E-value=0.00034  Score=48.19  Aligned_cols=39  Identities=18%  Similarity=0.295  Sum_probs=32.9

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ..+|+.|+||||++.+|+.++.+|+++|.   .+.+.+.+..
T Consensus        35 ~v~g~~vLITGgg~GlGr~ialefa~rg~---~~vl~Din~~   73 (300)
T KOG1201|consen   35 SVSGEIVLITGGGSGLGRLIALEFAKRGA---KLVLWDINKQ   73 (300)
T ss_pred             hccCCEEEEeCCCchHHHHHHHHHHHhCC---eEEEEecccc
Confidence            36799999999999999999999999987   6666666543

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.52  E-value=0.0003  Score=48.84  Aligned_cols=37  Identities=24%  Similarity=0.358  Sum_probs=31.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|+|.||||++|..+++.|.++++.+.++..+.+..
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~   38 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASAR   38 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccc
Confidence            5899999999999999999999877666777777653

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=97.49  E-value=0.00018  Score=47.28  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=28.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHH----hCCCcceEEEEeCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLR----SCPGIKNIYLLMRPK   63 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~----~g~~~~~V~~l~r~~   63 (82)
                      .++||||+++||.+++++|++    .|.   .|+.+.|+.
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~---~V~~~~r~~   38 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGS---VLVLSARND   38 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCc---EEEEEEcCH
Confidence            589999999999999999997    566   788888864

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>KOG4169|consensus

Probab=97.48  E-value=0.00017  Score=48.43  Aligned_cols=49  Identities=20%  Similarity=0.370  Sum_probs=34.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCccHHHHHHHH
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEI   75 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~~~~~~~~~   75 (82)
                      +.||.+++|||.|.||.+++++|+++|.   .+.++..+.+..+..+.+++.
T Consensus         3 ~tGKna~vtggagGIGl~~sk~Ll~kgi---k~~~i~~~~En~~a~akL~ai   51 (261)
T KOG4169|consen    3 LTGKNALVTGGAGGIGLATSKALLEKGI---KVLVIDDSEENPEAIAKLQAI   51 (261)
T ss_pred             ccCceEEEecCCchhhHHHHHHHHHcCc---hheeehhhhhCHHHHHHHhcc
Confidence            6799999999999999999999999965   344444333333333444443

>PRK06940 short chain dehydrogenase; Provisional

Probab=97.48  E-value=0.00029  Score=47.07  Aligned_cols=33  Identities=18%  Similarity=0.302  Sum_probs=27.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +|.++|||+ |+||.++++.|. +|.   .|++++|+.
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~G~---~Vv~~~r~~   34 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-AGK---KVLLADYNE   34 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-CCC---EEEEEeCCH
Confidence            578999998 689999999996 776   788888864

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.47  E-value=0.00029  Score=46.72  Aligned_cols=37  Identities=19%  Similarity=0.381  Sum_probs=32.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.|-+||||||+..||..++++|.+.|-   +|++..|+.
T Consensus         3 ~tgnTiLITGG~sGIGl~lak~f~elgN---~VIi~gR~e   39 (245)
T COG3967           3 TTGNTILITGGASGIGLALAKRFLELGN---TVIICGRNE   39 (245)
T ss_pred             ccCcEEEEeCCcchhhHHHHHHHHHhCC---EEEEecCcH
Confidence            4578999999999999999999999987   788888864

>KOG1014|consensus

Probab=97.40  E-value=0.00024  Score=49.16  Aligned_cols=38  Identities=26%  Similarity=0.320  Sum_probs=33.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCc
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQ   66 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~   66 (82)
                      |+-++|||||..||++.+++|+++|.   .|+.++|..+..
T Consensus        49 g~WAVVTGaTDGIGKayA~eLAkrG~---nvvLIsRt~~KL   86 (312)
T KOG1014|consen   49 GSWAVVTGATDGIGKAYARELAKRGF---NVVLISRTQEKL   86 (312)
T ss_pred             CCEEEEECCCCcchHHHHHHHHHcCC---EEEEEeCCHHHH
Confidence            47789999999999999999999988   799999976643

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=97.29  E-value=0.0006  Score=45.12  Aligned_cols=27  Identities=26%  Similarity=0.466  Sum_probs=23.5

Q ss_pred             cCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         33 GGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        33 G~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+|||+|.++++.|+++|+   .|+++.|.
T Consensus        23 ~SSG~iG~aLA~~L~~~G~---~V~li~r~   49 (229)
T PRK06732         23 HSTGQLGKIIAETFLAAGH---EVTLVTTK   49 (229)
T ss_pred             ccchHHHHHHHHHHHhCCC---EEEEEECc
Confidence            6799999999999999998   77777764

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.24  E-value=0.0013  Score=44.89  Aligned_cols=37  Identities=14%  Similarity=0.143  Sum_probs=31.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++|+|+ |.+|++++..|.+.|.  ..|+++.|+.
T Consensus       124 ~~~k~vlI~GA-GGagrAia~~La~~G~--~~V~I~~R~~  160 (289)
T PRK12548        124 VKGKKLTVIGA-GGAATAIQVQCALDGA--KEITIFNIKD  160 (289)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCC--CEEEEEeCCc
Confidence            46789999999 7999999999999965  3588888875

>KOG1207|consensus

Probab=97.21  E-value=0.0006  Score=44.50  Aligned_cols=40  Identities=23%  Similarity=0.269  Sum_probs=36.1

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++.|+.|++||+.-.||+.++..|.+.|.   .|+++.|.+.
T Consensus         3 t~laG~~vlvTgagaGIG~~~v~~La~aGA---~ViAvaR~~a   42 (245)
T KOG1207|consen    3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAGA---QVIAVARNEA   42 (245)
T ss_pred             ccccceEEEeecccccccHHHHHHHHhcCC---EEEEEecCHH
Confidence            347899999999999999999999999998   8999999754

>PLN00015 protochlorophyllide reductase

Probab=97.14  E-value=0.00067  Score=46.02  Aligned_cols=31  Identities=16%  Similarity=0.214  Sum_probs=27.3

Q ss_pred             EEEcCCChHHHHHHHHHHHhC-CCcceEEEEeCCC
Q psy16528         30 FVTGGTGFMGKVLVEKLLRSC-PGIKNIYLLMRPK   63 (82)
Q Consensus        30 lItG~tG~iG~~i~~~l~~~g-~~~~~V~~l~r~~   63 (82)
                      +||||++.||.+++++|+++| +   .|+...|+.
T Consensus         1 lITGas~GIG~aia~~l~~~G~~---~V~~~~r~~   32 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKW---HVVMACRDF   32 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCC---EEEEEeCCH
Confidence            599999999999999999998 6   778777754

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.13  E-value=0.0012  Score=45.29  Aligned_cols=34  Identities=15%  Similarity=0.140  Sum_probs=29.3

Q ss_pred             ccCcEEEEEcCC--ChHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         24 YQNRSVFVTGGT--GFMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        24 ~~~~~ilItG~t--G~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      +.+|.++|||++  ..||.++++.|.++|.   .|+..+
T Consensus         6 ~~gk~alITGa~~~~GIG~a~A~~la~~Ga---~Vvv~~   41 (299)
T PRK06300          6 LTGKIAFIAGIGDDQGYGWGIAKALAEAGA---TILVGT   41 (299)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHCCC---EEEEEe
Confidence            678999999995  8899999999999998   565544

>KOG1203|consensus

Probab=97.12  E-value=0.00075  Score=48.37  Aligned_cols=39  Identities=28%  Similarity=0.448  Sum_probs=34.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      .+...|+|+||||.+|+.+++.|+++|.   .|+++.|+...
T Consensus        77 ~~~~~VlVvGatG~vG~~iv~~llkrgf---~vra~VRd~~~  115 (411)
T KOG1203|consen   77 KKPTTVLVVGATGKVGRRIVKILLKRGF---SVRALVRDEQK  115 (411)
T ss_pred             CCCCeEEEecCCCchhHHHHHHHHHCCC---eeeeeccChhh
Confidence            4457899999999999999999999997   89999997654

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=97.08  E-value=0.00088  Score=46.49  Aligned_cols=37  Identities=24%  Similarity=0.236  Sum_probs=29.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCC----CcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCP----GIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~----~~~~V~~l~r~~   63 (82)
                      .+|+|||++|++|++++..|+..+.    ...+|+.+++++
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~   43 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPP   43 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCC
Confidence            4799999999999999999988642    112788888854

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.04  E-value=0.0019  Score=45.10  Aligned_cols=36  Identities=28%  Similarity=0.338  Sum_probs=29.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+|.|+||||++|..+++.|.++++.+.++..+...
T Consensus         5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~   40 (336)
T PRK05671          5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS   40 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc
Confidence            579999999999999999999877666666666544

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.95  E-value=0.0038  Score=37.98  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=32.5

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++++++|.|+ |..|+.++..|.+.|.  ..|+.+.|+.
T Consensus         9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~--~~i~i~nRt~   46 (135)
T PF01488_consen    9 DLKGKRVLVIGA-GGAARAVAAALAALGA--KEITIVNRTP   46 (135)
T ss_dssp             TGTTSEEEEESS-SHHHHHHHHHHHHTTS--SEEEEEESSH
T ss_pred             CcCCCEEEEECC-HHHHHHHHHHHHHcCC--CEEEEEECCH
Confidence            378999999998 7789999999999965  4799999864

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.93  E-value=0.0022  Score=41.83  Aligned_cols=35  Identities=31%  Similarity=0.341  Sum_probs=30.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|.|.||+|.+|+.++..|.+.|+   +|...+|+++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~---~V~v~~r~~~   35 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGN---KIIIGSRDLE   35 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC---EEEEEEcCHH
Confidence            4699999999999999999999987   7777787643

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=96.92  E-value=0.0018  Score=43.74  Aligned_cols=33  Identities=18%  Similarity=0.297  Sum_probs=28.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|+|+||||. |+.+++.|.+.|+   .|++..+..
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~~g~---~v~~s~~t~   33 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIAQGI---EILVTVTTS   33 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHhCCC---eEEEEEccC
Confidence            47999999999 9999999999987   677766654

This enzyme was found to be a monomer by gel filtration.

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=96.89  E-value=0.0022  Score=44.74  Aligned_cols=35  Identities=26%  Similarity=0.364  Sum_probs=28.7

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +|+|.||||++|..+++.|.++++.+.++..+.+.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~   35 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD   35 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc
Confidence            47899999999999999999987766566666554

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=96.83  E-value=0.0043  Score=43.48  Aligned_cols=36  Identities=22%  Similarity=0.248  Sum_probs=29.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ..+|.|.||||++|..+++.|.++++...++..+..
T Consensus         7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las   42 (344)
T PLN02383          7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLAS   42 (344)
T ss_pred             CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEc
Confidence            468999999999999999999987766556655544

>KOG1209|consensus

Probab=96.74  E-value=0.0039  Score=41.90  Aligned_cols=36  Identities=25%  Similarity=0.391  Sum_probs=31.4

Q ss_pred             CcEEEEEcC-CChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGG-TGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~-tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+.|+|||+ .|.||.++++.|.+.|+   .|++.+|.-+
T Consensus         7 ~k~VlItgcs~GGIG~ala~ef~~~G~---~V~AtaR~~e   43 (289)
T KOG1209|consen    7 PKKVLITGCSSGGIGYALAKEFARNGY---LVYATARRLE   43 (289)
T ss_pred             CCeEEEeecCCcchhHHHHHHHHhCCe---EEEEEccccc
Confidence            478999876 79999999999999998   8999998654

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=96.70  E-value=0.0042  Score=44.24  Aligned_cols=36  Identities=28%  Similarity=0.552  Sum_probs=30.9

Q ss_pred             ccCcEEEEEcC----------------CChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGG----------------TGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~----------------tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++|++++||||                +|.+|.++++.|.++|.   .|+.+.++
T Consensus       183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga---~V~~~~g~  234 (390)
T TIGR00521       183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGA---DVTLITGP  234 (390)
T ss_pred             cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCC---EEEEeCCC
Confidence            67899999998                46799999999999998   77776654

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.64  E-value=0.0046  Score=43.20  Aligned_cols=33  Identities=27%  Similarity=0.400  Sum_probs=26.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      .+|+|+||+|++|+.+++.|.+. +.+ ++..+.+
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~-p~~-el~~~~~   36 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANH-PWF-EVTALAA   36 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcC-CCc-eEEEEEc
Confidence            68999999999999999998876 333 6666633

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=96.59  E-value=0.0077  Score=42.18  Aligned_cols=38  Identities=24%  Similarity=0.383  Sum_probs=30.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +..+|.|.||||++|..+++.|.++.+...++..+...
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~   40 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE   40 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc
Confidence            35689999999999999999999865555576666543

>KOG1611|consensus

Probab=96.56  E-value=0.0063  Score=40.85  Aligned_cols=39  Identities=36%  Similarity=0.496  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      .+.++||||+..||-.++++|++. .++..+++..|+++.
T Consensus         3 pksv~ItGaNRGIGlgLVk~llk~-~~i~~iiat~r~~e~   41 (249)
T KOG1611|consen    3 PKSVFITGANRGIGLGLVKELLKD-KGIEVIIATARDPEK   41 (249)
T ss_pred             CccEEEeccCcchhHHHHHHHhcC-CCcEEEEEecCChHH
Confidence            356999999999999999999977 466566666665543

>KOG4039|consensus

Probab=96.55  E-value=0.0038  Score=40.86  Aligned_cols=39  Identities=31%  Similarity=0.484  Sum_probs=34.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++++..+|.||||..|+.+++++++++ ...+|+++.|.+
T Consensus        16 mq~~s~fvlGAtG~~G~~llk~~~E~~-~FSKV~~i~RR~   54 (238)
T KOG4039|consen   16 MQNMSGFVLGATGLCGGGLLKHAQEAP-QFSKVYAILRRE   54 (238)
T ss_pred             hhccceEEEeccccccHHHHHHHHhcc-cceeEEEEEecc
Confidence            467899999999999999999999994 678999999874

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.53  E-value=0.0049  Score=41.69  Aligned_cols=38  Identities=16%  Similarity=0.344  Sum_probs=32.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++|+|+ |.+|++++..|.+.|  +..|++++|+..
T Consensus       121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g--~~~V~v~~R~~~  158 (278)
T PRK00258        121 LKGKRILILGA-GGAARAVILPLLDLG--VAEITIVNRTVE  158 (278)
T ss_pred             CCCCEEEEEcC-cHHHHHHHHHHHHcC--CCEEEEEeCCHH
Confidence            56789999997 999999999999886  338999999754

>KOG1200|consensus

Probab=96.51  E-value=0.0066  Score=40.29  Aligned_cols=39  Identities=15%  Similarity=0.241  Sum_probs=32.4

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ..++.+.++||||+..||++++..|.+.|+   +|.+.+++.
T Consensus        10 ~r~~sk~~~vtGg~sGIGrAia~~la~~Ga---rv~v~dl~~   48 (256)
T KOG1200|consen   10 QRLMSKVAAVTGGSSGIGRAIAQLLAKKGA---RVAVADLDS   48 (256)
T ss_pred             HHHhcceeEEecCCchHHHHHHHHHHhcCc---EEEEeecch
Confidence            346678899999999999999999999998   666666543

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=96.51  E-value=0.012  Score=42.22  Aligned_cols=33  Identities=12%  Similarity=0.180  Sum_probs=28.1

Q ss_pred             cCcEEEEEcCCChHHHH--HHHHHHHhCCCcceEEEEeC
Q psy16528         25 QNRSVFVTGGTGFMGKV--LVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~--i~~~l~~~g~~~~~V~~l~r   61 (82)
                      .+|++||||+++.+|.+  +++.| ++|.   .+.++++
T Consensus        40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA---~Vi~v~~   74 (398)
T PRK13656         40 GPKKVLVIGASSGYGLASRIAAAF-GAGA---DTLGVFF   74 (398)
T ss_pred             CCCEEEEECCCchHhHHHHHHHHH-HcCC---eEEEEec
Confidence            46899999999999999  89999 8887   6666664

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.44  E-value=0.0074  Score=42.88  Aligned_cols=36  Identities=22%  Similarity=0.525  Sum_probs=29.0

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +.++|.|.||||++|..+++.|.+. +.. +|..+.+.
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~h-P~~-el~~l~s~   72 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANH-PDF-EITVMTAD   72 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhC-CCC-eEEEEECh
Confidence            3468999999999999999999888 333 67777764

>KOG1478|consensus

Probab=96.44  E-value=0.011  Score=40.60  Aligned_cols=27  Identities=19%  Similarity=0.365  Sum_probs=23.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPG   52 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~   52 (82)
                      .|.++|||++..+|-+||.+|++..+.
T Consensus         3 RKvalITGanSglGl~i~~RLl~~~De   29 (341)
T KOG1478|consen    3 RKVALITGANSGLGLAICKRLLAEDDE   29 (341)
T ss_pred             ceEEEEecCCCcccHHHHHHHHhccCC
Confidence            478999999999999999999998543

>KOG0747|consensus

Probab=96.41  E-value=0.0036  Score=43.36  Aligned_cols=28  Identities=32%  Similarity=0.784  Sum_probs=24.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCc
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGI   53 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~   53 (82)
                      .+.++||||+||||++.+..+...-+++
T Consensus         6 ~~~vlItgg~gfi~Sn~~~~~~~~~p~~   33 (331)
T KOG0747|consen    6 EKNVLITGGAGFIGSNFINYLVDKYPDY   33 (331)
T ss_pred             cceEEEecCcCcchhhhhhhcccCCCCC
Confidence            4889999999999999999999986554

>KOG2865|consensus

Probab=96.40  E-value=0.0063  Score=42.46  Aligned_cols=37  Identities=27%  Similarity=0.435  Sum_probs=30.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.|-.+-|.|||||+|++++.+|.+.|.   .|++-.|..
T Consensus        59 ~sGiVaTVFGAtGFlGryvvnklak~GS---QviiPyR~d   95 (391)
T KOG2865|consen   59 VSGIVATVFGATGFLGRYVVNKLAKMGS---QVIIPYRGD   95 (391)
T ss_pred             ccceEEEEecccccccHHHHHHHhhcCC---eEEEeccCC
Confidence            5566778889999999999999999987   677777643

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.39  E-value=0.016  Score=35.61  Aligned_cols=37  Identities=22%  Similarity=0.222  Sum_probs=31.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|.|+|++|.+|++++..|...+ -..+++.+++.+.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~-l~~ei~L~D~~~~   37 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQG-LADEIVLIDINED   37 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTT-TSSEEEEEESSHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCC-CCCceEEeccCcc
Confidence            479999999999999999999985 3558999888644

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=96.37  E-value=0.012  Score=41.07  Aligned_cols=33  Identities=27%  Similarity=0.486  Sum_probs=25.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ++|+|.|+||++|+.+++.|.+. +.+ ++..+.+
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~-p~~-elv~v~~   35 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNH-PEV-EIVAVTS   35 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcC-CCc-eEEEEEC
Confidence            68999999999999999999876 334 4545444

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=96.35  E-value=0.0092  Score=41.11  Aligned_cols=36  Identities=31%  Similarity=0.438  Sum_probs=30.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|.|+|++|++|..++..|+..|. ..+|+.++|..
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~-~~~v~lvd~~~   36 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDV-VKEINLISRPK   36 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEECcc
Confidence            5799999999999999999999964 23688888844

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK05086 malate dehydrogenase; Provisional

Probab=96.30  E-value=0.013  Score=40.46  Aligned_cols=37  Identities=24%  Similarity=0.225  Sum_probs=28.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|+|.||+|.+|++++..|........++..++|++
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~   37 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAP   37 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCC
Confidence            5799999999999999998865322234677777753

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.30  E-value=0.0098  Score=42.31  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=31.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++|+|+++ +|..+++.|++.|+   .|.+.++..
T Consensus         3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~---~V~~~d~~~   38 (450)
T PRK14106          3 LKGKKVLVVGAGV-SGLALAKFLKKLGA---KVILTDEKE   38 (450)
T ss_pred             cCCCEEEEECCCH-HHHHHHHHHHHCCC---EEEEEeCCc
Confidence            4689999999888 99999999999998   788887753

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=96.25  E-value=0.014  Score=37.63  Aligned_cols=36  Identities=31%  Similarity=0.572  Sum_probs=25.3

Q ss_pred             ccCcEEEEEcC----------------CChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGG----------------TGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~----------------tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++|++||||+|                ||-.|.++++.+.++|+   .|+.+..+
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga---~V~li~g~   52 (185)
T PF04127_consen    1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGA---EVTLIHGP   52 (185)
T ss_dssp             -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT----EEEEEE-T
T ss_pred             CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCC---EEEEEecC
Confidence            46778888864                68999999999999998   66666654

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.22  E-value=0.015  Score=36.95  Aligned_cols=37  Identities=22%  Similarity=0.331  Sum_probs=32.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.+++|+|.|+.+++|.-+++.|.+.|.   .|+...|..
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~g~---~V~v~~r~~   78 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNRNA---TVTVCHSKT   78 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCC---EEEEEECCc
Confidence            6899999999988899999999999976   688888753

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.20  E-value=0.0078  Score=42.99  Aligned_cols=35  Identities=26%  Similarity=0.409  Sum_probs=30.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|+|.|+ |++|+.+++.|++.+.  .+|++.+|+..
T Consensus         2 ~~ilviGa-G~Vg~~va~~la~~~d--~~V~iAdRs~~   36 (389)
T COG1748           2 MKILVIGA-GGVGSVVAHKLAQNGD--GEVTIADRSKE   36 (389)
T ss_pred             CcEEEECC-chhHHHHHHHHHhCCC--ceEEEEeCCHH
Confidence            67999999 9999999999999973  48999999754

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.19  E-value=0.018  Score=40.87  Aligned_cols=36  Identities=25%  Similarity=0.253  Sum_probs=30.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++|||++| +|.+.++.|++.|.   .|.+.++..
T Consensus         3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~---~V~~~d~~~   38 (447)
T PRK02472          3 YQNKKVLVLGLAK-SGYAAAKLLHKLGA---NVTVNDGKP   38 (447)
T ss_pred             cCCCEEEEEeeCH-HHHHHHHHHHHCCC---EEEEEcCCC
Confidence            4678999999988 99999999999988   777777654

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.15  E-value=0.018  Score=37.35  Aligned_cols=36  Identities=25%  Similarity=0.282  Sum_probs=30.6

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .++||+++|.|. |-+|+++++.|.+.|.   +|++.+++
T Consensus        25 ~l~gk~v~I~G~-G~vG~~~A~~L~~~G~---~Vvv~D~~   60 (200)
T cd01075          25 SLEGKTVAVQGL-GKVGYKLAEHLLEEGA---KLIVADIN   60 (200)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEcCC
Confidence            367899999998 5799999999999988   77776665

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=96.09  E-value=0.013  Score=49.96  Aligned_cols=36  Identities=22%  Similarity=0.288  Sum_probs=31.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhC-CCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSC-PGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g-~~~~~V~~l~r~   62 (82)
                      -+++.++||||++.||..++++|.+++ .   .|+.+.|+
T Consensus      1995 ~~g~vvLVTGGarGIG~aiA~~LA~~~ga---~viL~gRs 2031 (2582)
T TIGR02813      1995 NSDDVFLVTGGAKGVTFECALELAKQCQA---HFILAGRS 2031 (2582)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHhcCC---EEEEEeCC
Confidence            458999999999999999999999984 5   78888887

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.06  E-value=0.016  Score=35.31  Aligned_cols=38  Identities=16%  Similarity=0.255  Sum_probs=30.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++|+|+ |.+|..+++.|.+.+  ...|++.+|+..
T Consensus        17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g--~~~v~v~~r~~~   54 (155)
T cd01065          17 LKGKKVLILGA-GGAARAVAYALAELG--AAKIVIVNRTLE   54 (155)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCC--CCEEEEEcCCHH
Confidence            45689999997 899999999999885  237888887643

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.05  E-value=0.019  Score=37.39  Aligned_cols=35  Identities=23%  Similarity=0.353  Sum_probs=29.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++++|+|.|| |-+|...++.|++.|.   .|+.+++.
T Consensus         8 l~~k~vLVIGg-G~va~~ka~~Ll~~ga---~V~VIs~~   42 (202)
T PRK06718          8 LSNKRVVIVGG-GKVAGRRAITLLKYGA---HIVVISPE   42 (202)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC---eEEEEcCC
Confidence            68999999998 8899999999999987   67777653

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.05  E-value=0.016  Score=42.75  Aligned_cols=36  Identities=19%  Similarity=0.203  Sum_probs=31.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++|+|+ |.+|++++..|.+.|.   .|+.+.|..
T Consensus       377 ~~~k~vlIlGa-GGagrAia~~L~~~G~---~V~i~nR~~  412 (529)
T PLN02520        377 LAGKLFVVIGA-GGAGKALAYGAKEKGA---RVVIANRTY  412 (529)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            56789999999 7899999999999976   788888853

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.05  E-value=0.018  Score=40.23  Aligned_cols=29  Identities=31%  Similarity=0.579  Sum_probs=23.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEE
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIY   57 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~   57 (82)
                      ++|.|.||||++|..+++.|.+. +.+ ++.
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~h-P~~-el~   29 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNH-PEV-EIT   29 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcC-CCc-eEE
Confidence            47999999999999999999876 444 444

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.04  E-value=0.014  Score=42.01  Aligned_cols=35  Identities=23%  Similarity=0.272  Sum_probs=30.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|.|.||+|.+|..++..|.+.|.   .|.+.+|++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~---~V~v~~r~~~   35 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF---EVIVTGRDPK   35 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC---EEEEEECChH
Confidence            4799999999999999999999987   7888887643

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=95.91  E-value=0.017  Score=40.79  Aligned_cols=35  Identities=26%  Similarity=0.453  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++|.|.||.|.+|..++..|.+.|+   .|++.+|+.
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G~---~V~~~d~~~  132 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSGY---QVRILEQDD  132 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCCC---eEEEeCCCc
Confidence            37899999999999999999999987   788887753

>PRK06849 hypothetical protein; Provisional

Probab=95.89  E-value=0.027  Score=39.50  Aligned_cols=36  Identities=17%  Similarity=0.183  Sum_probs=31.1

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.++|||||+...+|..+++.|.+.|+   +|++++..+
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~---~Vi~~d~~~   38 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGH---TVILADSLK   38 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            358999999999999999999999988   777777654

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=95.89  E-value=0.02  Score=39.89  Aligned_cols=31  Identities=26%  Similarity=0.350  Sum_probs=24.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL   59 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l   59 (82)
                      ++|.|+|++|++|+++++.|.+.. .+ ++..+
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~-~~-~l~~v   31 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHP-YF-ELAKV   31 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC-Cc-eEEEE
Confidence            369999999999999999887763 34 44444

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>KOG1210|consensus

Probab=95.88  E-value=0.017  Score=40.40  Aligned_cols=37  Identities=22%  Similarity=0.368  Sum_probs=33.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCc
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQ   66 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~   66 (82)
                      .+|+||||+..+|..++..+..+|.   .|.++.|+....
T Consensus        34 ~hi~itggS~glgl~la~e~~~~ga---~Vti~ar~~~kl   70 (331)
T KOG1210|consen   34 RHILITGGSSGLGLALALECKREGA---DVTITARSGKKL   70 (331)
T ss_pred             ceEEEecCcchhhHHHHHHHHHccC---ceEEEeccHHHH
Confidence            5899999999999999999999998   889999976543

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=95.85  E-value=0.038  Score=33.17  Aligned_cols=36  Identities=31%  Similarity=0.503  Sum_probs=29.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|+|.|.+|-+|+.+++.+.+. .+...+-+++|.+
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~-~~~~lv~~v~~~~   36 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILES-PGFELVGAVDRKP   36 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHS-TTEEEEEEEETTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhc-CCcEEEEEEecCC
Confidence            47999999999999999999996 3555566677765

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=95.84  E-value=0.019  Score=38.61  Aligned_cols=35  Identities=23%  Similarity=0.350  Sum_probs=29.9

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++++++|+|+ |.+|+.++..|.+.|.   .|+...|+.
T Consensus       116 ~~k~vliiGa-Gg~g~aia~~L~~~g~---~v~v~~R~~  150 (270)
T TIGR00507       116 PNQRVLIIGA-GGAARAVALPLLKADC---NVIIANRTV  150 (270)
T ss_pred             cCCEEEEEcC-cHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            4789999998 7899999999999875   788888864

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.79  E-value=0.026  Score=38.64  Aligned_cols=35  Identities=17%  Similarity=0.331  Sum_probs=31.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ++|++++|.|++|.+|+.++..|++.|.   .|+...|
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~~~ga---tVtv~~~  191 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLLNANA---TVTICHS  191 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCC---EEEEEeC
Confidence            6799999999999999999999999976   7777766

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.75  E-value=0.032  Score=37.24  Aligned_cols=39  Identities=21%  Similarity=0.140  Sum_probs=31.7

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ...++.++|+|.|+ |.+|+.+++.|...|.  ..+..++.+
T Consensus        27 Q~~L~~~~VliiG~-GglGs~va~~La~~Gv--g~i~lvD~D   65 (245)
T PRK05690         27 QEKLKAARVLVVGL-GGLGCAASQYLAAAGV--GTLTLVDFD   65 (245)
T ss_pred             HHHhcCCeEEEECC-CHHHHHHHHHHHHcCC--CEEEEEcCC
Confidence            34578899999988 8899999999999964  477777654

>PTZ00325 malate dehydrogenase; Provisional

Probab=95.74  E-value=0.027  Score=39.20  Aligned_cols=38  Identities=21%  Similarity=0.147  Sum_probs=30.4

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      .++.++|.|+|++|.+|+.++..|...+ -..++..+++
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~-~~~elvL~Di   42 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNP-HVSELSLYDI   42 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCC-CCCEEEEEec
Confidence            3556799999999999999999988664 2347888877

>PLN00106 malate dehydrogenase

Probab=95.72  E-value=0.035  Score=38.68  Aligned_cols=37  Identities=19%  Similarity=0.122  Sum_probs=30.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++|+|+|++|.+|+.++..|...+ -+.++..++..+
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~-~~~el~L~Di~~   54 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNP-LVSELHLYDIAN   54 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCC-CCCEEEEEecCC
Confidence            4689999999999999999998764 344788888755

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=95.70  E-value=0.021  Score=37.72  Aligned_cols=27  Identities=26%  Similarity=0.514  Sum_probs=22.3

Q ss_pred             EcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         32 TGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        32 tG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      -.++|++|.++++.|+++|+   .|+.+++
T Consensus        21 N~SSGgIG~AIA~~la~~Ga---~Vvlv~~   47 (227)
T TIGR02114        21 NHSTGHLGKIITETFLSAGH---EVTLVTT   47 (227)
T ss_pred             CCcccHHHHHHHHHHHHCCC---EEEEEcC
Confidence            35689999999999999998   6666654

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.61  E-value=0.022  Score=36.86  Aligned_cols=39  Identities=13%  Similarity=0.267  Sum_probs=31.4

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ...+++.+|+|.|..| +|+++++.|...|.  ..++.++.+
T Consensus        14 q~~L~~s~VlviG~gg-lGsevak~L~~~GV--g~i~lvD~d   52 (198)
T cd01485          14 QNKLRSAKVLIIGAGA-LGAEIAKNLVLAGI--DSITIVDHR   52 (198)
T ss_pred             HHHHhhCcEEEECCCH-HHHHHHHHHHHcCC--CEEEEEECC
Confidence            3447788999998888 99999999999964  477777654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.60  E-value=0.041  Score=38.83  Aligned_cols=36  Identities=31%  Similarity=0.404  Sum_probs=27.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHH-hCCCcceEEEEeC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLR-SCPGIKNIYLLMR   61 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~-~g~~~~~V~~l~r   61 (82)
                      +.+|.|.||||++|..+++.|.+ ...++.++..+..
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS   41 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSS   41 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEEC
Confidence            46899999999999999999985 4344445555554

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.54  E-value=0.028  Score=39.30  Aligned_cols=39  Identities=21%  Similarity=0.394  Sum_probs=32.0

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ...++.++|+|.|+ |.+|+.++..|.+.|.  ..+..++++
T Consensus        19 Q~~L~~~~VlVvG~-GglGs~va~~La~aGv--g~i~lvD~D   57 (339)
T PRK07688         19 QQKLREKHVLIIGA-GALGTANAEMLVRAGV--GKVTIVDRD   57 (339)
T ss_pred             HHHhcCCcEEEECC-CHHHHHHHHHHHHcCC--CeEEEEeCC
Confidence            34577889999988 7899999999999964  478888775

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=95.51  E-value=0.067  Score=32.79  Aligned_cols=35  Identities=14%  Similarity=0.265  Sum_probs=27.1

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        29 ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |.|.|+||-||+..+.-+.+....+ +|++++-..+
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f-~v~~Lsa~~n   35 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKF-EVVALSAGSN   35 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTE-EEEEEEESST
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCce-EEEEEEcCCC
Confidence            5789999999999999888885444 7777765433

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.49  E-value=0.047  Score=37.87  Aligned_cols=37  Identities=16%  Similarity=0.311  Sum_probs=32.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.||+|.+.|.+|.+|+-++..|+++|+   .|+...+..
T Consensus       157 l~Gk~V~vIG~s~ivG~PmA~~L~~~ga---tVtv~~~~t  193 (301)
T PRK14194        157 LTGKHAVVIGRSNIVGKPMAALLLQAHC---SVTVVHSRS  193 (301)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC---EEEEECCCC
Confidence            6799999999999999999999999988   777776543

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.48  E-value=0.036  Score=35.35  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=27.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +|.|.|+ |.+|+.|+..++..|+   .|...++++..
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~---~V~l~d~~~~~   34 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGY---EVTLYDRSPEA   34 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTS---EEEEE-SSHHH
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCC---cEEEEECChHH
Confidence            4788888 9999999999999998   88888886553

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=95.47  E-value=0.042  Score=36.73  Aligned_cols=36  Identities=19%  Similarity=0.251  Sum_probs=30.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+++|+|++|.+|..+++.+...|.   .|+++.+++
T Consensus       162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~---~v~~~~~~~  197 (332)
T cd08259         162 KGDTVLVTGAGGGVGIHAIQLAKALGA---RVIAVTRSP  197 (332)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCC---eEEEEeCCH
Confidence            467999999999999999999999987   677777643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.47  E-value=0.032  Score=38.13  Aligned_cols=34  Identities=21%  Similarity=0.303  Sum_probs=29.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|.|.| .|.+|..++..|++.|+   .|++.+|++.
T Consensus         3 ~~V~VIG-~G~mG~~iA~~la~~G~---~V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIG-AGLIGRAWAIVFARAGH---EVRLWDADPA   36 (308)
T ss_pred             cEEEEEC-ccHHHHHHHHHHHHCCC---eeEEEeCCHH
Confidence            4688998 99999999999999988   7888888653

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=95.47  E-value=0.032  Score=38.76  Aligned_cols=37  Identities=27%  Similarity=0.305  Sum_probs=29.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcc-----eEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIK-----NIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~-----~V~~l~r~~   63 (82)
                      .++|.|+|++|.+|..++..|+..+. +.     +++.++..+
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~-~~~~~~~el~L~Di~~   43 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEM-FGPDQPVILQLLELPQ   43 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccc-cCCCCceEEEEEecCC
Confidence            36899999999999999999987753 44     688888744

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.39  E-value=0.031  Score=32.45  Aligned_cols=35  Identities=20%  Similarity=0.352  Sum_probs=29.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++++|+|.|| |-+|..=++.|++.|.   .|+.++..
T Consensus         5 l~~~~vlVvGg-G~va~~k~~~Ll~~gA---~v~vis~~   39 (103)
T PF13241_consen    5 LKGKRVLVVGG-GPVAARKARLLLEAGA---KVTVISPE   39 (103)
T ss_dssp             -TT-EEEEEEE-SHHHHHHHHHHCCCTB---EEEEEESS
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEECCc
Confidence            57899999999 7889999999999987   78887765

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=95.38  E-value=0.035  Score=37.81  Aligned_cols=35  Identities=14%  Similarity=0.171  Sum_probs=29.2

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .|.+|+|+|++|.+|..+++.+...|.   .|++.+++
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~---~Vi~~~~~  185 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGC---YVVGSAGS  185 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCC---EEEEEeCC
Confidence            478999999999999999988888876   67776654

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.33  E-value=0.056  Score=37.22  Aligned_cols=36  Identities=17%  Similarity=0.351  Sum_probs=31.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +.|++++|.|+++.+|+-++..|.+++.   .|+.+.+.
T Consensus       156 l~Gk~vvVIGrs~~VG~pla~lL~~~ga---tVtv~~s~  191 (286)
T PRK14175        156 LEGKNAVVIGRSHIVGQPVSKLLLQKNA---SVTILHSR  191 (286)
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCC---eEEEEeCC
Confidence            6799999999999999999999999976   67666654

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.31  E-value=0.055  Score=37.41  Aligned_cols=36  Identities=19%  Similarity=0.350  Sum_probs=31.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe-CC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM-RP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~-r~   62 (82)
                      +.|++|+|.|.++.+|.-++..|+++|+   .|++.. |.
T Consensus       156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~---tVtv~~~rT  192 (296)
T PRK14188        156 LSGLNAVVIGRSNLVGKPMAQLLLAANA---TVTIAHSRT  192 (296)
T ss_pred             CCCCEEEEEcCCcchHHHHHHHHHhCCC---EEEEECCCC
Confidence            6799999999999999999999999987   777763 54

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.27  E-value=0.05  Score=37.20  Aligned_cols=37  Identities=16%  Similarity=0.241  Sum_probs=32.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.+++++|.|. |.+|+.+++.|...|.   +|++.+|++.
T Consensus       149 l~gk~v~IiG~-G~iG~avA~~L~~~G~---~V~v~~R~~~  185 (287)
T TIGR02853       149 IHGSNVMVLGF-GRTGMTIARTFSALGA---RVFVGARSSA  185 (287)
T ss_pred             CCCCEEEEEcC-hHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            57899999999 7799999999999976   7888888653

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=95.25  E-value=0.055  Score=37.66  Aligned_cols=33  Identities=24%  Similarity=0.420  Sum_probs=25.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      .+|.|.||||+.|..+++.|.+. +.+ ++..+..
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~h-p~~-~l~~~~s   35 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGR-SDI-ELLSIPE   35 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcC-CCe-EEEEEec
Confidence            57999999999999999988888 455 4444443

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=95.17  E-value=0.058  Score=35.69  Aligned_cols=34  Identities=18%  Similarity=0.238  Sum_probs=27.1

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++...||+|-+|+.++..|.+.|+   +|..-+|+.+
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~---eV~igs~r~~   35 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGH---EVIIGSSRGP   35 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCC---eEEEecCCCh
Confidence            456679999999999999999988   6666655433

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.16  E-value=0.066  Score=34.70  Aligned_cols=39  Identities=18%  Similarity=0.179  Sum_probs=31.2

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ...+++++|+|.| .|.+|+++++.|...|.  ..+..++++
T Consensus        16 q~kl~~~~VlviG-~GglGs~ia~~La~~Gv--~~i~lvD~d   54 (202)
T TIGR02356        16 QQRLLNSHVLIIG-AGGLGSPAALYLAGAGV--GTIVIVDDD   54 (202)
T ss_pred             HHHhcCCCEEEEC-CCHHHHHHHHHHHHcCC--CeEEEecCC
Confidence            3457789999988 56689999999999964  477777765

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.15  E-value=0.051  Score=35.18  Aligned_cols=38  Identities=16%  Similarity=0.276  Sum_probs=30.6

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ..+++++|+|.|..| +|+++++.|...|.  ..+..++.+
T Consensus        17 ~~L~~s~VlIiG~gg-lG~evak~La~~GV--g~i~lvD~d   54 (197)
T cd01492          17 KRLRSARILLIGLKG-LGAEIAKNLVLSGI--GSLTILDDR   54 (197)
T ss_pred             HHHHhCcEEEEcCCH-HHHHHHHHHHHcCC--CEEEEEECC
Confidence            447788999998666 99999999999964  477777654

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.13  E-value=0.044  Score=38.90  Aligned_cols=34  Identities=18%  Similarity=0.348  Sum_probs=28.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+|+|.|+ |.+|.++++.|.++|.   .|+.+++++.
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~---~v~vid~~~~   34 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENN---DVTVIDTDEE   34 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC---cEEEEECCHH
Confidence            47889987 9999999999999987   6778877543

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=95.12  E-value=0.04  Score=37.26  Aligned_cols=35  Identities=14%  Similarity=0.110  Sum_probs=29.0

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+.+|+|+|++|.+|...+..+...|.   .|++.+++
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~---~Vi~~~~s  172 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGC---KVVGAAGS  172 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCC---EEEEEeCC
Confidence            478999999999999999888888776   67776654

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=95.10  E-value=0.045  Score=36.75  Aligned_cols=35  Identities=14%  Similarity=0.145  Sum_probs=29.2

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+.+++|+||+|.+|...++.+...|.   .|++.+++
T Consensus       143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~---~vi~~~~s  177 (329)
T cd08294         143 AGETVVVNGAAGAVGSLVGQIAKIKGC---KVIGCAGS  177 (329)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCC---EEEEEeCC
Confidence            478999999999999999888888876   67776654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.10  E-value=0.047  Score=38.22  Aligned_cols=40  Identities=20%  Similarity=0.326  Sum_probs=32.0

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ...+++++|+|.|+ |.+|+++++.|.+.|.  ..+..++++.
T Consensus        19 Q~~L~~~~VlIiG~-GglGs~va~~La~aGv--g~i~lvD~D~   58 (338)
T PRK12475         19 QRKIREKHVLIVGA-GALGAANAEALVRAGI--GKLTIADRDY   58 (338)
T ss_pred             HHhhcCCcEEEECC-CHHHHHHHHHHHHcCC--CEEEEEcCCc
Confidence            44578899999997 5589999999999964  4777777753

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=95.09  E-value=0.11  Score=36.22  Aligned_cols=36  Identities=28%  Similarity=0.293  Sum_probs=29.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcc-----eEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIK-----NIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~-----~V~~l~r~~   63 (82)
                      .+|.|+|++|++|++++..|+..+. +.     +++.++..+
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~-~~~~~~~el~L~Di~~   44 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGEL-FGKDQPVVLHLLDIPP   44 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCc-ccCCCccEEEEEecCC
Confidence            4799999999999999999988853 44     688887754

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.04  E-value=0.1  Score=35.76  Aligned_cols=38  Identities=16%  Similarity=0.253  Sum_probs=30.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++++++|.|+.| .+++++..|...|  +.+|+++.|...
T Consensus       122 ~~~k~vlvlGaGG-aarAi~~~l~~~g--~~~i~i~nRt~~  159 (288)
T PRK12749        122 IKGKTMVLLGAGG-ASTAIGAQGAIEG--LKEIKLFNRRDE  159 (288)
T ss_pred             cCCCEEEEECCcH-HHHHHHHHHHHCC--CCEEEEEeCCcc
Confidence            4678999999755 5999999998885  458999999754

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=95.03  E-value=0.084  Score=35.41  Aligned_cols=36  Identities=28%  Similarity=0.433  Sum_probs=27.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|.|+|++|.+|+.+++.+.+. .++..+-++++.+
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~-~~~elvav~d~~~   37 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAA-EDLELVAAVDRPG   37 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCC
Confidence            57999999999999999888765 3454455555544

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=95.00  E-value=0.051  Score=37.82  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=26.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +|.|.|++||.|..+++.|... +.++.+...++
T Consensus         3 ~v~IvGasGy~G~el~rlL~~H-P~~el~~l~s~   35 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGR-DDIELLSIAPD   35 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCC-CCeEEEEEecc
Confidence            6899999999999999999998 56644444444

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.00  E-value=0.11  Score=32.85  Aligned_cols=37  Identities=16%  Similarity=0.220  Sum_probs=31.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.|++|.|.|- |-||+++++.+...|.   +|++.+|...
T Consensus        34 l~g~tvgIiG~-G~IG~~vA~~l~~fG~---~V~~~d~~~~   70 (178)
T PF02826_consen   34 LRGKTVGIIGY-GRIGRAVARRLKAFGM---RVIGYDRSPK   70 (178)
T ss_dssp             STTSEEEEEST-SHHHHHHHHHHHHTT----EEEEEESSCH
T ss_pred             cCCCEEEEEEE-cCCcCeEeeeeecCCc---eeEEecccCC
Confidence            67899999865 8999999999999988   8999998755

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.99  E-value=0.072  Score=34.63  Aligned_cols=39  Identities=18%  Similarity=0.173  Sum_probs=30.9

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ...++.++|+|.|+ |.+|+.++..|.+.|.  ..++.++++
T Consensus        16 q~~L~~~~V~IvG~-GglGs~ia~~La~~Gv--g~i~lvD~D   54 (200)
T TIGR02354        16 VQKLEQATVAICGL-GGLGSNVAINLARAGI--GKLILVDFD   54 (200)
T ss_pred             HHHHhCCcEEEECc-CHHHHHHHHHHHHcCC--CEEEEECCC
Confidence            34577889999988 5589999999999965  467777765

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=94.98  E-value=0.053  Score=38.00  Aligned_cols=34  Identities=21%  Similarity=0.359  Sum_probs=25.7

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        29 ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+|.|+ |++|+.+++.|.+.. +...|.+.+|+..
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~-~~~~v~va~r~~~   34 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRG-PFEEVTVADRNPE   34 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTT-CE-EEEEEESSHH
T ss_pred             CEEEcC-cHHHHHHHHHHhcCC-CCCcEEEEECCHH
Confidence            689999 999999999999994 3447888888643

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>cd00704 MDH Malate dehydrogenase

Probab=94.95  E-value=0.071  Score=37.09  Aligned_cols=35  Identities=26%  Similarity=0.296  Sum_probs=28.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcc-----eEEEEeCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIK-----NIYLLMRPK   63 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~-----~V~~l~r~~   63 (82)
                      +|.|+|++|.+|+.++..|...+. +.     .++.+++.+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~-~~~~~~~~l~L~Di~~   41 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGEL-FGDDQPVILHLLDIPP   41 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCc-cCCCCceEEEEEecCC
Confidence            699999999999999999887742 22     477777765

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=94.95  E-value=0.04  Score=38.89  Aligned_cols=33  Identities=24%  Similarity=0.469  Sum_probs=26.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      .+|.|.||+|+.|..+++.|... +++. +...+.
T Consensus         3 ~kV~IvGasGYtG~EL~rlL~~H-p~ve-~~~~ss   35 (349)
T COG0002           3 IKVGIVGASGYTGLELLRLLAGH-PDVE-LILISS   35 (349)
T ss_pred             ceEEEEcCCCCcHHHHHHHHhcC-CCeE-EEEeec
Confidence            58999999999999999999998 5665 444443

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=94.93  E-value=0.079  Score=37.26  Aligned_cols=36  Identities=33%  Similarity=0.400  Sum_probs=29.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++|.|.|+||.+|+.+++.|.++...+..+..+...
T Consensus         2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~   37 (334)
T COG0136           2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASA   37 (334)
T ss_pred             cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecc
Confidence            579999999999999999999976666655555543

>PRK06444 prephenate dehydrogenase; Provisional

Probab=94.91  E-value=0.052  Score=35.35  Aligned_cols=26  Identities=27%  Similarity=0.365  Sum_probs=23.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPG   52 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~   52 (82)
                      +++.|.||+|.+|+.++..|.+.|+.
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~   26 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLG   26 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCE
Confidence            47899999999999999999999873

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=94.84  E-value=0.13  Score=28.74  Aligned_cols=35  Identities=29%  Similarity=0.391  Sum_probs=28.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +.+++++|.|. |..|+.++..|.+.+.  ..|+..+|
T Consensus        21 ~~~~~v~i~G~-G~~g~~~a~~l~~~~~--~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGA-GEVGKGIAKLLADEGG--KKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEEcC
Confidence            56789999999 9999999999999842  26776666

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=94.75  E-value=0.069  Score=37.99  Aligned_cols=35  Identities=17%  Similarity=0.254  Sum_probs=27.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHH-HhCCCcceEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLL-RSCPGIKNIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~-~~g~~~~~V~~l~r   61 (82)
                      ++|.|.|+||.+|+.+++.|. +....+..++.++.
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss   36 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFST   36 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEc
Confidence            468999999999999999998 55445556666664

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=94.71  E-value=0.062  Score=36.53  Aligned_cols=38  Identities=18%  Similarity=0.139  Sum_probs=30.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++|.|+ |..+++++..|.+.|.  ..|+++.|+..
T Consensus       123 ~~~k~vlvlGa-GGaarai~~aL~~~G~--~~i~I~nRt~~  160 (282)
T TIGR01809       123 LAGFRGLVIGA-GGTSRAAVYALASLGV--TDITVINRNPD  160 (282)
T ss_pred             cCCceEEEEcC-cHHHHHHHHHHHHcCC--CeEEEEeCCHH
Confidence            46789999977 6679999999999854  47899998643

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK05442 malate dehydrogenase; Provisional

Probab=94.70  E-value=0.089  Score=36.70  Aligned_cols=37  Identities=27%  Similarity=0.299  Sum_probs=29.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcc-----eEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIK-----NIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~-----~V~~l~r~~   63 (82)
                      .++|.|+|++|.+|+.++..|+..+. +.     ++..++..+
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~~~-~~~~~~~el~LiDi~~   45 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASGDM-LGKDQPVILQLLEIPP   45 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhhhh-cCCCCccEEEEEecCC
Confidence            36899999999999999999887643 33     677777754

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=94.63  E-value=0.056  Score=37.46  Aligned_cols=26  Identities=19%  Similarity=0.285  Sum_probs=24.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCP   51 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~   51 (82)
                      +.+|||+||+|.+|+..++.+...|.
T Consensus       143 g~~VLV~gaaGgVG~~aiQlAk~~G~  168 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLAKALGA  168 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHHHHcCC
Confidence            78999999999999999999888875

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=94.61  E-value=0.1  Score=36.18  Aligned_cols=35  Identities=23%  Similarity=0.135  Sum_probs=28.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++|.|+|++|.+|++++..|...+. +.++..++.+
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~-~~elvLiDi~   35 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPL-VSELALYDIV   35 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-CcEEEEEecC
Confidence            4799999999999999999887753 4477777765

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=94.51  E-value=0.17  Score=35.09  Aligned_cols=39  Identities=18%  Similarity=0.264  Sum_probs=31.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ++++|.|+|+ |.+|..++..|+..+. +.++..++++.+.
T Consensus         5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~-~~el~L~D~~~~~   43 (315)
T PRK00066          5 QHNKVVLVGD-GAVGSSYAYALVNQGI-ADELVIIDINKEK   43 (315)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCCch
Confidence            4679999998 9999999999988853 4478888885543

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.48  E-value=0.11  Score=31.19  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=25.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .++|+|.|+. .+|+.+++.|.+.|.  ..+..++.+
T Consensus         2 ~~~v~iiG~G-~vGs~va~~L~~~Gv--~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAG-GVGSEVAKNLARSGV--GKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTS-HHHHHHHHHHHHHTT--SEEEEEESS
T ss_pred             CCEEEEECcC-HHHHHHHHHHHHhCC--CceeecCCc
Confidence            4678887765 589999999999965  477777654

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.46  E-value=0.13  Score=32.14  Aligned_cols=33  Identities=18%  Similarity=0.273  Sum_probs=27.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      ++|++|+|.|| |-+|...++.|++.|.   .|..++
T Consensus        11 l~~~~vlVvGG-G~va~rka~~Ll~~ga---~V~VIs   43 (157)
T PRK06719         11 LHNKVVVIIGG-GKIAYRKASGLKDTGA---FVTVVS   43 (157)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEc
Confidence            68999999886 5589999999999988   666654

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=94.46  E-value=0.15  Score=32.26  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=27.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++||+++|.|.+..+|+-++..|.+++.   .|......
T Consensus        34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~a---tVt~~h~~   69 (160)
T PF02882_consen   34 LEGKKVVVVGRSNIVGKPLAMLLLNKGA---TVTICHSK   69 (160)
T ss_dssp             TTT-EEEEE-TTTTTHHHHHHHHHHTT----EEEEE-TT
T ss_pred             CCCCEEEEECCcCCCChHHHHHHHhCCC---eEEeccCC
Confidence            6799999999999999999999999977   66665443

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=94.46  E-value=0.083  Score=36.03  Aligned_cols=38  Identities=16%  Similarity=0.203  Sum_probs=30.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++++++|.|+.| .|++++..|.+.|  +.+|++++|...
T Consensus       125 ~~~k~vlIlGaGG-aaraia~aL~~~G--~~~I~I~nR~~~  162 (284)
T PRK12549        125 ASLERVVQLGAGG-AGAAVAHALLTLG--VERLTIFDVDPA  162 (284)
T ss_pred             ccCCEEEEECCcH-HHHHHHHHHHHcC--CCEEEEECCCHH
Confidence            4568899999854 8999999999985  457999998643

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=94.43  E-value=0.081  Score=37.65  Aligned_cols=35  Identities=17%  Similarity=0.320  Sum_probs=25.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhC-CCcceEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSC-PGIKNIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g-~~~~~V~~l~r   61 (82)
                      .+|.|.||||++|..+++.+++.. ..+..++.++.
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss   37 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFST   37 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecc
Confidence            478999999999999999666653 33334665554

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=94.42  E-value=0.13  Score=30.35  Aligned_cols=33  Identities=27%  Similarity=0.549  Sum_probs=24.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEE-eCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL-MRP   62 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l-~r~   62 (82)
                      ++.|+|++|.+|..+++.|.+. .++ ++.++ .++
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~-~~~-~l~av~~~~   34 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEH-PDF-EVVALAASA   34 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcC-CCc-eEEEEEech
Confidence            4789999999999999999886 233 45544 443

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=94.41  E-value=0.13  Score=33.88  Aligned_cols=38  Identities=26%  Similarity=0.274  Sum_probs=29.3

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ...+++++|+|.| .|.+|+++++.|.+.|.  ..+..++.
T Consensus        16 q~~L~~~~VlivG-~GglGs~va~~La~~Gv--g~i~lvD~   53 (228)
T cd00757          16 QEKLKNARVLVVG-AGGLGSPAAEYLAAAGV--GKLGLVDD   53 (228)
T ss_pred             HHHHhCCcEEEEC-CCHHHHHHHHHHHHcCC--CEEEEEcC
Confidence            3457788999988 56689999999999964  46666654

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.34  E-value=0.085  Score=36.06  Aligned_cols=38  Identities=16%  Similarity=0.144  Sum_probs=30.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++++++|.|+ |..+++++..|.+.|.  ..|+++.|...
T Consensus       125 ~~~k~vlilGa-GGaarAi~~aL~~~g~--~~i~i~nR~~~  162 (283)
T PRK14027        125 AKLDSVVQVGA-GGVGNAVAYALVTHGV--QKLQVADLDTS  162 (283)
T ss_pred             cCCCeEEEECC-cHHHHHHHHHHHHCCC--CEEEEEcCCHH
Confidence            45688999998 6689999999998854  47888888643

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=94.33  E-value=0.14  Score=33.60  Aligned_cols=35  Identities=11%  Similarity=0.196  Sum_probs=30.0

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++.+++|+|++|.+|..++..+...|.   .|++++++
T Consensus       139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~---~v~~~~~~  173 (323)
T cd05276         139 AGETVLIHGGASGVGTAAIQLAKALGA---RVIATAGS  173 (323)
T ss_pred             CCCEEEEEcCcChHHHHHHHHHHHcCC---EEEEEcCC
Confidence            578999999999999999999999976   67776664

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=94.31  E-value=0.14  Score=33.80  Aligned_cols=35  Identities=20%  Similarity=0.329  Sum_probs=29.9

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++++++|+|++|.+|..+++.+...|.   .|++..+.
T Consensus       144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~---~v~~~~~~  178 (325)
T cd08253         144 AGETVLVHGGSGAVGHAAVQLARWAGA---RVIATASS  178 (325)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCC---EEEEEeCC
Confidence            578999999999999999999888876   67777664

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=94.30  E-value=0.048  Score=37.93  Aligned_cols=36  Identities=31%  Similarity=0.393  Sum_probs=27.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcc-----eEEEEeCCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIK-----NIYLLMRPKH   64 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~-----~V~~l~r~~~   64 (82)
                      +|.|+|++|.+|++++..|...+. +.     +++.+++.+.
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~-~~~~~e~el~LiD~~~~   41 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRM-LGKDQPIILHLLDIPPA   41 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccc-cCCCCccEEEEEecCCc
Confidence            489999999999999999987643 21     4778887543

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK08328 hypothetical protein; Provisional

Probab=94.29  E-value=0.11  Score=34.40  Aligned_cols=38  Identities=21%  Similarity=0.135  Sum_probs=29.6

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ..+++++|+|.|+. .+|+++++.|.+.|.  ..++.++.+
T Consensus        23 ~~L~~~~VlIiG~G-GlGs~ia~~La~~Gv--g~i~lvD~D   60 (231)
T PRK08328         23 EKLKKAKVAVVGVG-GLGSPVAYYLAAAGV--GRILLIDEQ   60 (231)
T ss_pred             HHHhCCcEEEECCC-HHHHHHHHHHHHcCC--CEEEEEcCC
Confidence            44678899998765 479999999999964  477777654

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.25  E-value=0.12  Score=34.71  Aligned_cols=33  Identities=18%  Similarity=0.345  Sum_probs=27.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|+|.|+ |-+|..++..|.+.|+   .|..++|++
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~~g~---~V~~~~r~~   33 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQAGH---DVTLVARRG   33 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCh
Confidence            36888886 8999999999999987   788888853

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.22  E-value=0.22  Score=30.78  Aligned_cols=36  Identities=25%  Similarity=0.367  Sum_probs=31.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++|++|+|.|.+.-+|.-++..|.++|.   .|....+.
T Consensus        26 ~~gk~v~VvGrs~~vG~pla~lL~~~ga---tV~~~~~~   61 (140)
T cd05212          26 LDGKKVLVVGRSGIVGAPLQCLLQRDGA---TVYSCDWK   61 (140)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEeCCC
Confidence            6799999999999999999999999976   66666543

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.19  E-value=0.082  Score=37.02  Aligned_cols=35  Identities=17%  Similarity=0.120  Sum_probs=29.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+|.| ||||.+|+.+++-|.++...+.+++.+...
T Consensus         4 ~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~   38 (322)
T PRK06901          4 LNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIE   38 (322)
T ss_pred             ceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccc
Confidence            47999 999999999999999998777777766643

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.17  E-value=0.1  Score=36.64  Aligned_cols=39  Identities=18%  Similarity=0.147  Sum_probs=31.1

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ...+++++|+|.|+ |.+|+.+++.|...|.  ..+..++.+
T Consensus        23 q~~L~~~~VlivG~-GGlGs~~a~~La~~Gv--g~i~lvD~D   61 (355)
T PRK05597         23 QQSLFDAKVAVIGA-GGLGSPALLYLAGAGV--GHITIIDDD   61 (355)
T ss_pred             HHHHhCCeEEEECC-CHHHHHHHHHHHHcCC--CeEEEEeCC
Confidence            34577899999987 6689999999999964  477777765

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.17  E-value=0.21  Score=34.40  Aligned_cols=33  Identities=21%  Similarity=0.394  Sum_probs=29.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL   59 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l   59 (82)
                      +.||+|+|.|.+|.+|.-++..|+++|+   .|++.
T Consensus       156 l~Gk~v~vIG~S~ivG~Pla~lL~~~ga---tVtv~  188 (284)
T PRK14179        156 LEGKHAVVIGRSNIVGKPMAQLLLDKNA---TVTLT  188 (284)
T ss_pred             CCCCEEEEECCCCcCcHHHHHHHHHCCC---EEEEE
Confidence            6799999999999999999999999987   55554

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=94.09  E-value=0.15  Score=37.19  Aligned_cols=36  Identities=25%  Similarity=0.424  Sum_probs=30.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.+++++|+|+ |.+|++++..|.+.|.   .|+...|..
T Consensus       330 ~~~k~vlIiGa-GgiG~aia~~L~~~G~---~V~i~~R~~  365 (477)
T PRK09310        330 LNNQHVAIVGA-GGAAKAIATTLARAGA---ELLIFNRTK  365 (477)
T ss_pred             cCCCEEEEEcC-cHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            45789999996 8999999999999976   677777753

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=94.08  E-value=0.13  Score=34.45  Aligned_cols=35  Identities=26%  Similarity=0.269  Sum_probs=29.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.+|+|.|++|.+|..++..+...|.   .|+++++.+
T Consensus       147 ~~~vlI~g~~g~vg~~~~~~a~~~g~---~v~~~~~~~  181 (326)
T cd08289         147 QGPVLVTGATGGVGSLAVSILAKLGY---EVVASTGKA  181 (326)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC---eEEEEecCH
Confidence            56999999999999999998888876   677776643

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.08  E-value=0.15  Score=34.78  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=30.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ++|.|.|+ |.+|..++..|+..|+   .|+..+++++.
T Consensus         6 ~~V~ViGa-G~mG~~iA~~~a~~G~---~V~l~d~~~~~   40 (286)
T PRK07819          6 QRVGVVGA-GQMGAGIAEVCARAGV---DVLVFETTEEL   40 (286)
T ss_pred             cEEEEEcc-cHHHHHHHHHHHhCCC---EEEEEECCHHH
Confidence            47888877 8999999999999988   88998887654

>PRK13243 glyoxylate reductase; Reviewed

Probab=94.08  E-value=0.17  Score=35.20  Aligned_cols=38  Identities=13%  Similarity=0.157  Sum_probs=32.4

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+.|++|.|.|- |-||+.+++.|...|.   .|++.+|...
T Consensus       147 ~L~gktvgIiG~-G~IG~~vA~~l~~~G~---~V~~~d~~~~  184 (333)
T PRK13243        147 DVYGKTIGIIGF-GRIGQAVARRAKGFGM---RILYYSRTRK  184 (333)
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCC---EEEEECCCCC
Confidence            378999999987 9999999999999987   7888887543

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=94.07  E-value=0.18  Score=30.57  Aligned_cols=32  Identities=28%  Similarity=0.280  Sum_probs=25.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +|+|.|. |.+|+++++.|.+.|.  ..+..++.+
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv--~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGV--GKITLIDFD   32 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--CEEEEEcCC
Confidence            4778886 8899999999999965  467777654

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.02  E-value=0.12  Score=34.47  Aligned_cols=40  Identities=20%  Similarity=0.128  Sum_probs=30.6

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ...+++.+|+|.|+. .+|+.++..|.+.|.  ..++.++.+.
T Consensus        19 q~~L~~~~VlvvG~G-glGs~va~~La~~Gv--g~i~lvD~D~   58 (240)
T TIGR02355        19 QEALKASRVLIVGLG-GLGCAASQYLAAAGV--GNLTLLDFDT   58 (240)
T ss_pred             HHHHhCCcEEEECcC-HHHHHHHHHHHHcCC--CEEEEEeCCc
Confidence            345778899998765 579999999999964  4777777653

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=93.98  E-value=0.12  Score=33.35  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=29.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ..+.+|+|+|+++ +|..+++.+...|.   .|+++++++
T Consensus       133 ~~~~~vli~g~~~-~G~~~~~~a~~~g~---~v~~~~~~~  168 (271)
T cd05188         133 KPGDTVLVLGAGG-VGLLAAQLAKAAGA---RVIVTDRSD  168 (271)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCC---eEEEEcCCH
Confidence            3578999999999 99999998888875   777777653

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.95  E-value=0.27  Score=33.81  Aligned_cols=34  Identities=26%  Similarity=0.335  Sum_probs=27.9

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+.+|+|+|+ |.+|...+..+...|.   .|++++|+
T Consensus       172 ~g~~vlI~G~-G~vG~~a~q~ak~~G~---~vi~~~~~  205 (355)
T cd08230         172 NPRRALVLGA-GPIGLLAALLLRLRGF---EVYVLNRR  205 (355)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCC---eEEEEecC
Confidence            5789999985 9999999987777765   68888874

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>KOG1199|consensus

Probab=93.94  E-value=0.18  Score=33.08  Aligned_cols=38  Identities=29%  Similarity=0.432  Sum_probs=32.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++...+||||...+|+..++.|.++|.   .|..++.+.+
T Consensus         7 ~kglvalvtggasglg~ataerlakqga---sv~lldlp~s   44 (260)
T KOG1199|consen    7 TKGLVALVTGGASGLGKATAERLAKQGA---SVALLDLPQS   44 (260)
T ss_pred             hcCeeEEeecCcccccHHHHHHHHhcCc---eEEEEeCCcc
Confidence            5678899999999999999999999998   6777776543

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=93.93  E-value=0.18  Score=33.33  Aligned_cols=39  Identities=18%  Similarity=0.284  Sum_probs=31.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++|.|+ |..|+.++..|.+.|..-++|+.++|..
T Consensus        23 l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          23 IEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            67889999998 7789999999998854222799999973

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=93.92  E-value=0.21  Score=35.82  Aligned_cols=34  Identities=18%  Similarity=0.327  Sum_probs=26.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      |+|.|.|+||.||+..+.-+.+....+ +|.+++-
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f-~VvaLaa   35 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRF-RVVALSA   35 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCcccc-EEEEEEc
Confidence            689999999999999998876653233 6777763

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=93.90  E-value=0.17  Score=35.42  Aligned_cols=33  Identities=18%  Similarity=0.263  Sum_probs=27.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|+|.|| |++|..++.+|.+.|.   .|.++.|..
T Consensus         2 ~~vvIIGa-G~~G~~~A~~La~~g~---~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGA-GITGVTTAYALAQRGY---QVTVFDRHR   34 (410)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence            36788776 8999999999999987   788888764

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=93.87  E-value=0.19  Score=34.77  Aligned_cols=35  Identities=17%  Similarity=0.169  Sum_probs=28.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+.+|+|.|++|.+|...++.+...|.   .|++.+++
T Consensus       158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~---~Vi~~~~~  192 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQLAKLHGC---YVVGSAGS  192 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCC---EEEEEcCC
Confidence            478999999999999999988888876   56666654

>KOG1198|consensus

Probab=93.84  E-value=0.18  Score=35.53  Aligned_cols=27  Identities=26%  Similarity=0.431  Sum_probs=24.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSC   50 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g   50 (82)
                      -+|+.|||.||+|.+|++.++.....+
T Consensus       156 ~~g~~vLv~ggsggVG~~aiQlAk~~~  182 (347)
T KOG1198|consen  156 SKGKSVLVLGGSGGVGTAAIQLAKHAG  182 (347)
T ss_pred             CCCCeEEEEeCCcHHHHHHHHHHHhcC
Confidence            357899999999999999999888886

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.83  E-value=0.19  Score=34.61  Aligned_cols=35  Identities=17%  Similarity=0.301  Sum_probs=30.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +.|++++|.|.++.+|+-++..|.+++.   .|+...+
T Consensus       156 l~Gk~vvViGrs~iVGkPla~lL~~~~a---tVt~~hs  190 (285)
T PRK14189        156 LRGAHAVVIGRSNIVGKPMAMLLLQAGA---TVTICHS  190 (285)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC---EEEEecC
Confidence            6799999999999999999999999976   6665443

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=93.81  E-value=0.21  Score=33.02  Aligned_cols=35  Identities=14%  Similarity=0.193  Sum_probs=29.9

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++.+++|+|++|.+|..++..+...|.   .+++++++
T Consensus       144 ~~~~vli~g~~~~~g~~~~~~~~~~g~---~v~~~~~~  178 (328)
T cd08268         144 PGDSVLITAASSSVGLAAIQIANAAGA---TVIATTRT  178 (328)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCC---EEEEEcCC
Confidence            477999999999999999999998876   67776654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=93.80  E-value=0.14  Score=33.50  Aligned_cols=39  Identities=26%  Similarity=0.228  Sum_probs=30.8

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ...++..+|+|.|+ |.+|+.+++.|.+.|.  ..++.++.+
T Consensus        23 q~~L~~~~V~ViG~-GglGs~ia~~La~~Gv--g~i~lvD~D   61 (212)
T PRK08644         23 LEKLKKAKVGIAGA-GGLGSNIAVALARSGV--GNLKLVDFD   61 (212)
T ss_pred             HHHHhCCCEEEECc-CHHHHHHHHHHHHcCC--CeEEEEeCC
Confidence            34477889999985 6789999999999965  467777765

>PRK08818 prephenate dehydrogenase; Provisional

Probab=93.80  E-value=0.27  Score=34.97  Aligned_cols=34  Identities=18%  Similarity=0.098  Sum_probs=29.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEeCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRS-CPGIKNIYLLMRP   62 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~-g~~~~~V~~l~r~   62 (82)
                      ..+|.|.|.+|.+|..+++.|.+. +.   .|++.++.
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~~~---~V~g~D~~   38 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRMQL---EVIGHDPA   38 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCC---EEEEEcCC
Confidence            468999999999999999999876 33   78888875

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=93.76  E-value=0.16  Score=35.21  Aligned_cols=35  Identities=23%  Similarity=0.144  Sum_probs=28.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +|.|+|++|.+|++++..|...+ -+.++..+++.+
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~-~~~elvL~Di~~   35 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQP-YVSELSLYDIAG   35 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCC-CCcEEEEecCCC
Confidence            48899999999999999988874 345788887755

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK08223 hypothetical protein; Validated

Probab=93.75  E-value=0.14  Score=35.38  Aligned_cols=39  Identities=18%  Similarity=0.154  Sum_probs=30.5

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ...+++.+|+|.|+.| +|+.++..|.+.|.  ..+..++.+
T Consensus        22 Q~kL~~s~VlIvG~GG-LGs~va~~LA~aGV--G~i~lvD~D   60 (287)
T PRK08223         22 QQRLRNSRVAIAGLGG-VGGIHLLTLARLGI--GKFTIADFD   60 (287)
T ss_pred             HHHHhcCCEEEECCCH-HHHHHHHHHHHhCC--CeEEEEeCC
Confidence            3457889999987765 79999999999964  477777664

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=93.72  E-value=0.23  Score=33.99  Aligned_cols=37  Identities=19%  Similarity=0.328  Sum_probs=29.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ++|.|.|+ |.+|+.++..|+..|. ..+|..+++.+..
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~-~~ei~l~D~~~~~   37 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGI-ADELVLIDINEEK   37 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCcch
Confidence            36889996 9999999999999863 2278888886543

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=93.66  E-value=0.17  Score=32.86  Aligned_cols=29  Identities=21%  Similarity=0.335  Sum_probs=25.1

Q ss_pred             cCC--ChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         33 GGT--GFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        33 G~t--G~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |++  +.||.+++++|+++|.   .|++.+|+..
T Consensus         1 g~~~s~GiG~aia~~l~~~Ga---~V~~~~~~~~   31 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEEGA---NVILTDRNEE   31 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHTTE---EEEEEESSHH
T ss_pred             CCCCCCChHHHHHHHHHHCCC---EEEEEeCChH
Confidence            555  9999999999999998   8899888654

...

>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Probab=93.66  E-value=0.21  Score=35.84  Aligned_cols=36  Identities=19%  Similarity=0.335  Sum_probs=26.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|.|.|+||.||+..+.-+.+....+ +|.+++-..
T Consensus         2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f-~v~~Laa~~   37 (389)
T TIGR00243         2 KQIVILGSTGSIGKSTLDVVRHNPDHF-QVVALSAGK   37 (389)
T ss_pred             ceEEEEecChHHHHHHHHHHHhCcccc-EEEEEEcCC
Confidence            689999999999999988766543233 677776543

1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.

>KOG1610|consensus

Probab=93.62  E-value=0.16  Score=35.57  Aligned_cols=34  Identities=21%  Similarity=0.366  Sum_probs=29.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      ..+|.|+|||.-..+|..++++|.++|.   .|.+-.
T Consensus        27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf---~V~Agc   60 (322)
T KOG1610|consen   27 LSDKAVLITGCDSGFGRLLAKKLDKKGF---RVFAGC   60 (322)
T ss_pred             cCCcEEEEecCCcHHHHHHHHHHHhcCC---EEEEEe
Confidence            5578999999988889999999999987   666544

>PLN02256 arogenate dehydrogenase

Probab=93.54  E-value=0.23  Score=34.25  Aligned_cols=36  Identities=14%  Similarity=0.291  Sum_probs=30.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++++|.|.| .|.+|..++..|.+.|.   .|++++++.
T Consensus        34 ~~~~kI~IIG-~G~mG~slA~~L~~~G~---~V~~~d~~~   69 (304)
T PLN02256         34 SRKLKIGIVG-FGNFGQFLAKTFVKQGH---TVLATSRSD   69 (304)
T ss_pred             CCCCEEEEEe-eCHHHHHHHHHHHhCCC---EEEEEECcc
Confidence            3567899999 69999999999998875   788888764

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=93.52  E-value=0.22  Score=33.77  Aligned_cols=35  Identities=23%  Similarity=0.306  Sum_probs=28.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ++|.|.|+ |.+|..++..|+..|.   .|+..++++..
T Consensus         5 ~~V~vIG~-G~mG~~iA~~l~~~G~---~V~~~d~~~~~   39 (295)
T PLN02545          5 KKVGVVGA-GQMGSGIAQLAAAAGM---DVWLLDSDPAA   39 (295)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCC---eEEEEeCCHHH
Confidence            56888865 8999999999999987   78888876543

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.49  E-value=0.17  Score=34.20  Aligned_cols=35  Identities=20%  Similarity=0.216  Sum_probs=29.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ++|.|.|+ |.+|..++..|++.|+   .|+..++++..
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~~G~---~V~~~d~~~~~   36 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAVSGF---QTTLVDIKQEQ   36 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhCCC---cEEEEeCCHHH
Confidence            46888888 9999999999999988   78888886543

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=93.46  E-value=0.27  Score=33.75  Aligned_cols=37  Identities=24%  Similarity=0.233  Sum_probs=31.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.+++++|.|. |.+|..++..|.+.|.   .|++.+|++.
T Consensus       150 l~g~kvlViG~-G~iG~~~a~~L~~~Ga---~V~v~~r~~~  186 (296)
T PRK08306        150 IHGSNVLVLGF-GRTGMTLARTLKALGA---NVTVGARKSA  186 (296)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            46899999997 7799999999999976   8888888743

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=93.46  E-value=0.18  Score=33.91  Aligned_cols=37  Identities=16%  Similarity=0.113  Sum_probs=29.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++.+++|.|++|.+|..++..+...|.   .|+++++++
T Consensus       138 ~~~~~vlI~ga~g~ig~~~~~~a~~~g~---~v~~~~~~~  174 (329)
T cd08250         138 KSGETVLVTAAAGGTGQFAVQLAKLAGC---HVIGTCSSD  174 (329)
T ss_pred             CCCCEEEEEeCccHHHHHHHHHHHHcCC---eEEEEeCcH
Confidence            3578999999999999999888888876   677766643

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PRK06153 hypothetical protein; Provisional

Probab=93.43  E-value=0.17  Score=36.32  Aligned_cols=39  Identities=15%  Similarity=0.301  Sum_probs=30.7

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ...+++++|+|.|..| +|++++..|.+.|  +.+++.++.+
T Consensus       171 q~kL~~~~VaIVG~GG-~GS~Va~~LAR~G--VgeI~LVD~D  209 (393)
T PRK06153        171 SAKLEGQRIAIIGLGG-TGSYILDLVAKTP--VREIHLFDGD  209 (393)
T ss_pred             HHHHhhCcEEEEcCCc-cHHHHHHHHHHcC--CCEEEEECCC
Confidence            4457889999988766 7999999999996  4577776654

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=93.32  E-value=0.18  Score=28.30  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=26.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEE-eCCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL-MRPKH   64 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l-~r~~~   64 (82)
                      +|.+. |+|-+|.++++.|++.|....+|... +|+++
T Consensus         1 kI~iI-G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~   37 (96)
T PF03807_consen    1 KIGII-GAGNMGSALARGLLASGIKPHEVIIVSSRSPE   37 (96)
T ss_dssp             EEEEE-STSHHHHHHHHHHHHTTS-GGEEEEEEESSHH
T ss_pred             CEEEE-CCCHHHHHHHHHHHHCCCCceeEEeeccCcHH
Confidence            45666 88999999999999998322377744 66543

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=93.31  E-value=0.27  Score=32.47  Aligned_cols=36  Identities=11%  Similarity=0.249  Sum_probs=30.0

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+++|+|++|.+|..+++.+...|.   .|+++.++.
T Consensus       139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~---~v~~~~~~~  174 (325)
T TIGR02824       139 AGETVLIHGGASGIGTTAIQLAKAFGA---RVFTTAGSD  174 (325)
T ss_pred             CCCEEEEEcCcchHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            478999999999999999998888876   677766643

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.30  E-value=0.27  Score=35.39  Aligned_cols=36  Identities=22%  Similarity=0.277  Sum_probs=29.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.+++|+|.|+ |.+|..+++.|.+.|.   .|..+++.+
T Consensus        14 ~~~~~v~viG~-G~~G~~~A~~L~~~G~---~V~~~d~~~   49 (480)
T PRK01438         14 WQGLRVVVAGL-GVSGFAAADALLELGA---RVTVVDDGD   49 (480)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            56789999986 7799999999999987   777777543

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=93.24  E-value=0.24  Score=35.66  Aligned_cols=38  Identities=26%  Similarity=0.478  Sum_probs=31.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.+++|+|.|+ |.+|+.++..|.+.|.  ..|+...|...
T Consensus       179 l~~kkvlviGa-G~~a~~va~~L~~~g~--~~I~V~nRt~~  216 (414)
T PRK13940        179 ISSKNVLIIGA-GQTGELLFRHVTALAP--KQIMLANRTIE  216 (414)
T ss_pred             ccCCEEEEEcC-cHHHHHHHHHHHHcCC--CEEEEECCCHH
Confidence            67899999998 7789999999999864  47888888643

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=93.24  E-value=0.19  Score=33.84  Aligned_cols=32  Identities=22%  Similarity=0.306  Sum_probs=27.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +|.|.| .|.+|..++..|.+.|.   .|++.+|++
T Consensus         2 ~I~IIG-~G~mG~sla~~L~~~g~---~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVG-LGLIGGSLGLDLRSLGH---TVYGVSRRE   33 (279)
T ss_pred             eEEEEe-ecHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            688887 79999999999999987   788888754

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.24  E-value=0.23  Score=33.42  Aligned_cols=35  Identities=14%  Similarity=0.196  Sum_probs=28.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ++|.|.|+ |.+|..++..+++.|+   .|+.+++++..
T Consensus         4 ~kI~VIG~-G~mG~~ia~~la~~g~---~V~~~d~~~~~   38 (282)
T PRK05808          4 QKIGVIGA-GTMGNGIAQVCAVAGY---DVVMVDISDAA   38 (282)
T ss_pred             cEEEEEcc-CHHHHHHHHHHHHCCC---ceEEEeCCHHH
Confidence            46888876 9999999999999987   77888776443

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=93.23  E-value=0.28  Score=32.68  Aligned_cols=35  Identities=11%  Similarity=0.105  Sum_probs=29.8

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+.+++|+|+++.+|..++..+...|.   .|+..+++
T Consensus       166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~---~v~~~~~~  200 (342)
T cd08266         166 PGETVLVHGAGSGVGSAAIQIAKLFGA---TVIATAGS  200 (342)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCC
Confidence            478999999999999999999999977   66666664

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=93.21  E-value=0.26  Score=35.30  Aligned_cols=38  Identities=24%  Similarity=0.488  Sum_probs=31.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.+++++|.|+ |-+|..++..|...|  +..|++.+|+..
T Consensus       178 l~~~~VlViGa-G~iG~~~a~~L~~~G--~~~V~v~~rs~~  215 (417)
T TIGR01035       178 LKGKKALLIGA-GEMGELVAKHLLRKG--VGKILIANRTYE  215 (417)
T ss_pred             ccCCEEEEECC-hHHHHHHHHHHHHCC--CCEEEEEeCCHH
Confidence            56899999987 999999999999886  237888888643

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=93.20  E-value=0.17  Score=34.51  Aligned_cols=38  Identities=21%  Similarity=0.228  Sum_probs=29.2

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ..+++++|+|.|.. .+|+++++.|.+.|.  ..++.++.+
T Consensus        26 ~kL~~s~VlVvG~G-GVGs~vae~Lar~GV--g~itLiD~D   63 (268)
T PRK15116         26 QLFADAHICVVGIG-GVGSWAAEALARTGI--GAITLIDMD   63 (268)
T ss_pred             HHhcCCCEEEECcC-HHHHHHHHHHHHcCC--CEEEEEeCC
Confidence            34678899998664 589999999999963  467776654

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=93.19  E-value=0.26  Score=34.41  Aligned_cols=34  Identities=26%  Similarity=0.185  Sum_probs=27.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++|.|+|+ |.+|+.++..|+.++. ..+++.++..
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~-~~el~LiDi~   34 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGL-GSELVLIDIN   34 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccc-cceEEEEEcc
Confidence            47999999 9999999999977743 2278888876

>cd08293 PTGR2 Prostaglandin reductase

Probab=93.16  E-value=0.18  Score=34.25  Aligned_cols=34  Identities=12%  Similarity=0.077  Sum_probs=27.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+|+|+|++|.+|...++.+...|.  ..|++++++
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~--~~Vi~~~~s  189 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGC--SRVVGICGS  189 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCC--CEEEEEcCC
Confidence            7999999999999999887777764  246766654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=93.13  E-value=0.28  Score=35.56  Aligned_cols=37  Identities=19%  Similarity=0.157  Sum_probs=31.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.|++|+|.|. |.+|+.++..+...|.   .|++.++++.
T Consensus       210 l~Gk~VlViG~-G~IG~~vA~~lr~~Ga---~ViV~d~dp~  246 (425)
T PRK05476        210 IAGKVVVVAGY-GDVGKGCAQRLRGLGA---RVIVTEVDPI  246 (425)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEcCCch
Confidence            47899999996 8999999999999987   6777776543

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=93.11  E-value=0.19  Score=33.52  Aligned_cols=37  Identities=27%  Similarity=0.144  Sum_probs=28.8

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+++++|+|.|.. .+|+++++.|.+.|.  ..++.++.+
T Consensus         8 ~L~~~~VlVvG~G-GvGs~va~~Lar~GV--g~i~LvD~D   44 (231)
T cd00755           8 KLRNAHVAVVGLG-GVGSWAAEALARSGV--GKLTLIDFD   44 (231)
T ss_pred             HHhCCCEEEECCC-HHHHHHHHHHHHcCC--CEEEEECCC
Confidence            4677889998765 589999999999964  477777654

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=93.10  E-value=0.2  Score=33.60  Aligned_cols=35  Identities=14%  Similarity=0.157  Sum_probs=29.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+.+++|.|++|.+|..++..+.+.|.   .|+++++.
T Consensus       145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~---~vi~~~~~  179 (329)
T cd05288         145 PGETVVVSAAAGAVGSVVGQIAKLLGA---RVVGIAGS  179 (329)
T ss_pred             CCCEEEEecCcchHHHHHHHHHHHcCC---EEEEEeCC
Confidence            468999999999999999999888876   67766654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.08  E-value=0.35  Score=33.35  Aligned_cols=36  Identities=17%  Similarity=0.204  Sum_probs=30.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +.|++++|.|.+..+|+-++..|++++.   .|+...+.
T Consensus       157 l~Gk~vvViGrs~iVG~Pla~lL~~~~a---tVtv~hs~  192 (285)
T PRK10792        157 TYGLNAVVVGASNIVGRPMSLELLLAGC---TVTVCHRF  192 (285)
T ss_pred             CCCCEEEEECCCcccHHHHHHHHHHCCC---eEEEEECC
Confidence            6799999999999999999999999876   66665543

>PRK14031 glutamate dehydrogenase; Provisional

Probab=93.05  E-value=0.28  Score=35.75  Aligned_cols=34  Identities=18%  Similarity=0.317  Sum_probs=29.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ++|++|+|.|. |-+|++.++.|.+.|.   +|++++-
T Consensus       226 l~g~rVaVQGf-GNVG~~aA~~L~e~GA---kVVaVSD  259 (444)
T PRK14031        226 LKGKVCLVSGS-GNVAQYTAEKVLELGG---KVVTMSD  259 (444)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEEC
Confidence            67999999888 9999999999999988   6776554

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=93.03  E-value=0.21  Score=33.95  Aligned_cols=36  Identities=19%  Similarity=0.205  Sum_probs=29.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++|.|+ |..+++++..|.+.|.  .+|+++.|..+
T Consensus       122 ~~~vlilGa-GGaarAi~~aL~~~g~--~~i~i~nR~~~  157 (272)
T PRK12550        122 DLVVALRGS-GGMAKAVAAALRDAGF--TDGTIVARNEK  157 (272)
T ss_pred             CCeEEEECC-cHHHHHHHHHHHHCCC--CEEEEEeCCHH
Confidence            468888886 7789999999998854  47999999754

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=93.02  E-value=0.24  Score=36.38  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=27.8

Q ss_pred             ccCcEEEEEcC----------------CChHHHHHHHHHHHhCCCcceE
Q psy16528         24 YQNRSVFVTGG----------------TGFMGKVLVEKLLRSCPGIKNI   56 (82)
Q Consensus        24 ~~~~~ilItG~----------------tG~iG~~i~~~l~~~g~~~~~V   56 (82)
                      |+|++|+||+|                ||-.|.+|++.+..+|.+|..|
T Consensus       254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI  302 (475)
T PRK13982        254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLI  302 (475)
T ss_pred             cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEE
Confidence            78999999975                5799999999999999954333

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=92.99  E-value=0.3  Score=34.11  Aligned_cols=32  Identities=22%  Similarity=0.293  Sum_probs=26.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .|+|.|| |++|..++.+|.+.|.   .|.++.+..
T Consensus         2 ~v~IVG~-Gi~Gls~A~~l~~~g~---~V~vle~~~   33 (416)
T PRK00711          2 RVVVLGS-GVIGVTSAWYLAQAGH---EVTVIDRQP   33 (416)
T ss_pred             EEEEECC-cHHHHHHHHHHHHCCC---EEEEEeCCC
Confidence            5778776 8999999999999987   788888753

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=92.97  E-value=0.33  Score=33.84  Aligned_cols=38  Identities=18%  Similarity=0.104  Sum_probs=31.7

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++|++|.|.| .|.||+.+++.|...|.   .|++.+|.+.
T Consensus       143 ~l~g~~VgIIG-~G~IG~~vA~~L~~~G~---~V~~~d~~~~  180 (330)
T PRK12480        143 PVKNMTVAIIG-TGRIGAATAKIYAGFGA---TITAYDAYPN  180 (330)
T ss_pred             ccCCCEEEEEC-CCHHHHHHHHHHHhCCC---EEEEEeCChh
Confidence            36889999986 58899999999999987   7888887643

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=92.96  E-value=0.34  Score=33.12  Aligned_cols=37  Identities=30%  Similarity=0.552  Sum_probs=31.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|+|.|++|-.|+.+++.+.+. +++.-+-++.|.+.
T Consensus         3 iki~V~Ga~GRMG~~ii~~v~~~-~~~~L~aa~~~~~~   39 (266)
T COG0289           3 IKVAVAGASGRMGRTLIRAVLEA-PDLELVAAFDRPGS   39 (266)
T ss_pred             ceEEEEcCCChHHHHHHHHHhcC-CCceEEEEEecCCc
Confidence            57999999999999999999888 46667778888654

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=92.90  E-value=0.24  Score=33.04  Aligned_cols=35  Identities=20%  Similarity=0.198  Sum_probs=29.5

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+..++|+|++|.+|..++..+...|.   .|+++++.
T Consensus       142 ~~~~vlI~g~~~~~g~~~~~la~~~g~---~v~~~~~~  176 (324)
T cd08244         142 PGDVVLVTAAAGGLGSLLVQLAKAAGA---TVVGAAGG  176 (324)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC---EEEEEeCC
Confidence            477899999999999999998888876   67777654

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=92.84  E-value=0.28  Score=32.76  Aligned_cols=35  Identities=29%  Similarity=0.363  Sum_probs=28.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.+|+|.|++|.+|..++..+...|.   .|++.+++.
T Consensus       147 ~~~vlI~g~~g~vg~~~~~~a~~~g~---~v~~~~~~~  181 (325)
T cd05280         147 DGPVLVTGATGGVGSIAVAILAKLGY---TVVALTGKE  181 (325)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            45899999999999999988888876   577776653

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.78  E-value=0.39  Score=33.17  Aligned_cols=35  Identities=29%  Similarity=0.412  Sum_probs=30.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +.|++++|.|.+..+|+-++..|++++.   .|+...+
T Consensus       153 l~Gk~vvViGrS~iVGkPla~lL~~~~a---TVtichs  187 (287)
T PRK14173        153 LAGKEVVVVGRSNIVGKPLAALLLREDA---TVTLAHS  187 (287)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC---EEEEeCC
Confidence            6799999999999999999999999876   6665544

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=92.76  E-value=0.84  Score=29.74  Aligned_cols=35  Identities=23%  Similarity=0.400  Sum_probs=28.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++++|+|.|| |-+|..-++.|++.|.   .|++++..
T Consensus         7 l~gk~vlVvGg-G~va~rk~~~Ll~~ga---~VtVvsp~   41 (205)
T TIGR01470         7 LEGRAVLVVGG-GDVALRKARLLLKAGA---QLRVIAEE   41 (205)
T ss_pred             cCCCeEEEECc-CHHHHHHHHHHHHCCC---EEEEEcCC
Confidence            67899999986 5578999999999987   67777653

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=92.75  E-value=0.23  Score=34.16  Aligned_cols=38  Identities=24%  Similarity=0.360  Sum_probs=30.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.+++|+|.|+ |-+|..+++.|...|.  ..|++++|++.
T Consensus       176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~--~~V~v~~r~~~  213 (311)
T cd05213         176 LKGKKVLVIGA-GEMGELAAKHLAAKGV--AEITIANRTYE  213 (311)
T ss_pred             ccCCEEEEECc-HHHHHHHHHHHHHcCC--CEEEEEeCCHH
Confidence            46899999987 9999999999988643  37888888643

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=92.74  E-value=0.25  Score=34.82  Aligned_cols=38  Identities=13%  Similarity=0.105  Sum_probs=30.6

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ..+++++|+|.|+ |.+|++++..|.+.|.  ..+..++++
T Consensus       131 ~~l~~~~VlvvG~-GG~Gs~ia~~La~~Gv--g~i~lvD~d  168 (376)
T PRK08762        131 RRLLEARVLLIGA-GGLGSPAALYLAAAGV--GTLGIVDHD  168 (376)
T ss_pred             HHHhcCcEEEECC-CHHHHHHHHHHHHcCC--CeEEEEeCC
Confidence            3467889999955 6799999999999964  478877775

>PTZ00117 malate dehydrogenase; Provisional

Probab=92.73  E-value=0.5  Score=32.72  Aligned_cols=38  Identities=16%  Similarity=0.226  Sum_probs=30.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +.++|.|+|+ |.+|..++..+...+.  .++..++.+++.
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~--~~l~L~Di~~~~   41 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNL--GDVVLYDVIKGV   41 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCC--CeEEEEECCCcc
Confidence            5678999997 9999999998888863  368888876544

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=92.72  E-value=0.33  Score=34.49  Aligned_cols=36  Identities=25%  Similarity=0.404  Sum_probs=29.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ..++++|.|+ |.+|..+++.|.+.|.   .|+++++++.
T Consensus       230 ~~~~iiIiG~-G~~g~~l~~~L~~~~~---~v~vid~~~~  265 (453)
T PRK09496        230 PVKRVMIVGG-GNIGYYLAKLLEKEGY---SVKLIERDPE  265 (453)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCHH
Confidence            3578999998 9999999999999877   7788876543

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.72  E-value=0.33  Score=33.47  Aligned_cols=33  Identities=18%  Similarity=0.394  Sum_probs=29.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL   59 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l   59 (82)
                      +.|++|+|.|++..+|+-++..|+++|.   .|...
T Consensus       155 l~Gk~vvVvGrs~~VG~Pla~lL~~~gA---tVtv~  187 (285)
T PRK14191        155 IKGKDVVIIGASNIVGKPLAMLMLNAGA---SVSVC  187 (285)
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCC---EEEEE
Confidence            6799999999999999999999999976   55554

>KOG4288|consensus

Probab=92.71  E-value=0.16  Score=34.55  Aligned_cols=34  Identities=26%  Similarity=0.484  Sum_probs=28.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++..+.||+||+|..+|..+...|+   .+..++|+.
T Consensus         3 ~k~~vfgg~gflg~~ic~~a~~sgy---~vvsvsrsg   36 (283)
T KOG4288|consen    3 PKLIVFGGNGFLGKRICQEAVTSGY---QVVSVSRSG   36 (283)
T ss_pred             ccceeecccccchhhhhHHHHhcCc---eEEEecccc
Confidence            3567889999999999999999988   777777754

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.71  E-value=0.4  Score=33.02  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=30.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +.||+++|.|.+..+|+-++..|.+++.   .|....+
T Consensus       156 l~Gk~vvViGrS~~VGkPla~lL~~~~A---TVt~chs  190 (282)
T PRK14180        156 TEGAYAVVVGASNVVGKPVSQLLLNAKA---TVTTCHR  190 (282)
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHCCC---EEEEEcC
Confidence            6799999999999999999999999976   6665544

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=92.65  E-value=0.24  Score=34.96  Aligned_cols=38  Identities=16%  Similarity=0.207  Sum_probs=28.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+.+|+|.|++|.+|...+..+...|.+...|++++++
T Consensus       175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~  212 (410)
T cd08238         175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVN  212 (410)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCC
Confidence            36789999999999999888777765333356666554

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=92.60  E-value=0.26  Score=33.81  Aligned_cols=35  Identities=17%  Similarity=0.181  Sum_probs=28.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+|+|.|+ |.+|...+..+...|.   .|+++++++
T Consensus       166 ~g~~VlV~G~-G~vG~~a~~~a~~~G~---~vi~~~~~~  200 (349)
T TIGR03201       166 KGDLVIVIGA-GGVGGYMVQTAKAMGA---AVVAIDIDP  200 (349)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCC---eEEEEcCCH
Confidence            4789999999 9999999888888865   577766543

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=92.59  E-value=0.44  Score=32.75  Aligned_cols=36  Identities=28%  Similarity=0.313  Sum_probs=29.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|.|.|+ |.+|..++..|+..|. +.+|..++++..
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~-~~ev~l~D~~~~   36 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGL-ASEIVLVDINKA   36 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCC-CCEEEEEECCch
Confidence            36889998 9999999999999862 347888888654

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.57  E-value=0.39  Score=32.45  Aligned_cols=35  Identities=20%  Similarity=0.161  Sum_probs=29.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ++|.|.|+ |.+|..++..|++.|.   .|+..+++++.
T Consensus         5 ~kI~vIGa-G~mG~~iA~~la~~G~---~V~l~d~~~~~   39 (292)
T PRK07530          5 KKVGVIGA-GQMGNGIAHVCALAGY---DVLLNDVSADR   39 (292)
T ss_pred             CEEEEECC-cHHHHHHHHHHHHCCC---eEEEEeCCHHH
Confidence            57888876 8899999999999988   78888886543

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=92.56  E-value=0.3  Score=32.62  Aligned_cols=35  Identities=17%  Similarity=0.194  Sum_probs=28.9

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+.+++|.|++|.+|..++..+...|.   .+++..+.
T Consensus       139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~---~v~~~~~~  173 (324)
T cd08292         139 PGQWLIQNAAGGAVGKLVAMLAAARGI---NVINLVRR  173 (324)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCC---eEEEEecC
Confidence            478999999999999999998888876   56665543

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=92.54  E-value=0.33  Score=32.72  Aligned_cols=35  Identities=17%  Similarity=0.343  Sum_probs=28.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRS-CPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~-g~~~~~V~~l~r~~   63 (82)
                      +.+++|.|++|.+|..++..+... |.   .|+++++++
T Consensus       149 g~~vlV~ga~g~vg~~~~~~ak~~~G~---~vi~~~~~~  184 (336)
T TIGR02817       149 KRALLIIGGAGGVGSILIQLARQLTGL---TVIATASRP  184 (336)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHhCCC---EEEEEcCcH
Confidence            779999999999999998777766 66   677766543

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd05295 MDH_like Malate dehydrogenase-like

Probab=92.53  E-value=0.51  Score=34.53  Aligned_cols=23  Identities=17%  Similarity=0.153  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHH
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLR   48 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~   48 (82)
                      .-+|+||||+|.||.+++..+.+
T Consensus       123 p~~V~vtgAag~i~Y~l~~~ia~  145 (452)
T cd05295         123 PLQVCITNASAPLCYHLIPSLAS  145 (452)
T ss_pred             ceEEEEecCcHHHHHHHHHHHhC
Confidence            45799999999999999999876

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]

Probab=92.52  E-value=0.43  Score=34.16  Aligned_cols=36  Identities=19%  Similarity=0.325  Sum_probs=28.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |++.|.|+||.||...+.-+.+.+..+ +|.+++-..
T Consensus         2 k~i~iLGSTGSIG~qtLdVi~~~p~~f-~vval~ag~   37 (385)
T COG0743           2 KKLTILGSTGSIGTQTLDVIRRNPDKF-EVVALAAGK   37 (385)
T ss_pred             ceEEEEecCCchhHHHHHHHHhCCCcE-EEEEEecCC
Confidence            689999999999999999888886533 566666544

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=92.50  E-value=0.3  Score=32.90  Aligned_cols=36  Identities=17%  Similarity=0.237  Sum_probs=30.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+++|.|++|.+|..+++.+...|.   .|+++.++.
T Consensus       162 ~~~~vlI~g~~g~~g~~~~~la~~~g~---~vi~~~~~~  197 (334)
T PRK13771        162 KGETVLVTGAGGGVGIHAIQVAKALGA---KVIAVTSSE  197 (334)
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            467999999999999999999999876   677777654

>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase

Probab=92.49  E-value=0.43  Score=34.95  Aligned_cols=37  Identities=14%  Similarity=0.225  Sum_probs=27.6

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ..++|.|.|+||-||+..+.-+.+...++ +|.+++-.
T Consensus        56 ~~KkI~ILGSTGSIGtqtLdVI~~~pd~f-~vvaLaag   92 (454)
T PLN02696         56 GPKPISLLGSTGSIGTQTLDIVAENPDKF-KVVALAAG   92 (454)
T ss_pred             CccEEEEecCCcHhhHHHHHHHHhCcccc-EEEEEECC
Confidence            34799999999999999998877763333 56666543

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.46  E-value=0.46  Score=32.68  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=30.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +.||+++|.|.+..+|+-++..|++++.   .|+....
T Consensus       156 l~Gk~vvViGrS~~VGkPla~lL~~~~A---tVt~chs  190 (278)
T PRK14172        156 IEGKEVVVIGRSNIVGKPVAQLLLNENA---TVTICHS  190 (278)
T ss_pred             CCCCEEEEECCCccchHHHHHHHHHCCC---EEEEeCC
Confidence            6799999999999999999999999876   6666543

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=92.46  E-value=0.4  Score=32.03  Aligned_cols=37  Identities=19%  Similarity=0.135  Sum_probs=28.9

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCC-CcceEEEEeCCCCC
Q psy16528         29 VFVTGGTGFMGKVLVEKLLRSCP-GIKNIYLLMRPKHG   65 (82)
Q Consensus        29 ilItG~tG~iG~~i~~~l~~~g~-~~~~V~~l~r~~~~   65 (82)
                      |.|.|++|.+|..++..|+..+. ...+|..+++++..
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~   38 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEK   38 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCccc
Confidence            46899999999999999998861 23478888876543

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK06223 malate dehydrogenase; Reviewed

Probab=92.45  E-value=0.44  Score=32.45  Aligned_cols=36  Identities=19%  Similarity=0.260  Sum_probs=29.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ++|.|.|+ |.+|..++..+...+..  +|+.+++.++.
T Consensus         3 ~KI~VIGa-G~vG~~ia~~la~~~~~--ev~L~D~~~~~   38 (307)
T PRK06223          3 KKISIIGA-GNVGATLAHLLALKELG--DVVLFDIVEGV   38 (307)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCe--EEEEEECCCch
Confidence            58999999 99999999999888532  78888885543

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.43  E-value=0.47  Score=32.77  Aligned_cols=35  Identities=14%  Similarity=0.305  Sum_probs=30.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +.|++++|.|.+..+|+-++..|.+++.   .|.....
T Consensus       162 l~Gk~vvViGrs~iVGkPla~lL~~~~a---tVtv~hs  196 (287)
T PRK14176        162 IEGKNAVIVGHSNVVGKPMAAMLLNRNA---TVSVCHV  196 (287)
T ss_pred             CCCCEEEEECCCcccHHHHHHHHHHCCC---EEEEEec
Confidence            6799999999999999999999999976   5655543

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.41  E-value=0.37  Score=32.97  Aligned_cols=36  Identities=11%  Similarity=0.063  Sum_probs=27.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+.+|+|.|+ |.+|...+..+...|.   .|+++++++.
T Consensus       165 ~g~~VlV~G~-g~iG~~a~~~a~~~G~---~vi~~~~~~~  200 (329)
T TIGR02822       165 PGGRLGLYGF-GGSAHLTAQVALAQGA---TVHVMTRGAA  200 (329)
T ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHCCC---eEEEEeCChH
Confidence            4789999997 8899887776666654   6777777544

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=92.38  E-value=0.54  Score=31.15  Aligned_cols=34  Identities=15%  Similarity=0.173  Sum_probs=28.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +++++++|.| .|-+|+++++.|.+.|.   +|+.++.
T Consensus        29 l~~~~v~I~G-~G~VG~~~a~~L~~~g~---~vv~v~D   62 (227)
T cd01076          29 LAGARVAIQG-FGNVGSHAARFLHEAGA---KVVAVSD   62 (227)
T ss_pred             ccCCEEEEEC-CCHHHHHHHHHHHHCCC---EEEEEEC
Confidence            6789999987 69999999999999977   6665554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=92.36  E-value=0.35  Score=31.81  Aligned_cols=35  Identities=17%  Similarity=0.181  Sum_probs=29.5

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++.+++|+|++|.+|..++..+...|.   .|+.++++
T Consensus       139 ~~~~vli~g~~~~~g~~~~~~a~~~g~---~v~~~~~~  173 (323)
T cd08241         139 PGETVLVLGAAGGVGLAAVQLAKALGA---RVIAAASS  173 (323)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhCC---EEEEEeCC
Confidence            578999999999999999999888876   56766654

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=92.33  E-value=0.36  Score=31.96  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=30.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+++|.|++|.+|..++..+...|.   .|+.+++.+
T Consensus       132 ~~~~vli~g~~~~~g~~~~~~a~~~g~---~v~~~~~~~  167 (305)
T cd08270         132 LGRRVLVTGASGGVGRFAVQLAALAGA---HVVAVVGSP  167 (305)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            478999999999999999999988876   677776643

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.33  E-value=0.48  Score=32.70  Aligned_cols=35  Identities=17%  Similarity=0.245  Sum_probs=30.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +.||+++|.|.+..+|+-++..|++++.   .|+....
T Consensus       157 l~Gk~vvViGrS~iVGkPla~lL~~~~a---tVt~chs  191 (284)
T PRK14177        157 VTGKNAVVVGRSPILGKPMAMLLTEMNA---TVTLCHS  191 (284)
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHCCC---EEEEeCC
Confidence            6799999999999999999999999876   6666553

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.33  E-value=0.48  Score=32.85  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=30.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +.||+++|.|.+..+|+-++..|++++.   .|.....
T Consensus       156 l~Gk~vvVIGrS~iVGkPla~lL~~~~a---tVtv~hs  190 (297)
T PRK14186        156 IAGKKAVVVGRSILVGKPLALMLLAANA---TVTIAHS  190 (297)
T ss_pred             CCCCEEEEECCCccchHHHHHHHHHCCC---EEEEeCC
Confidence            6799999999999999999999999976   6665543

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.32  E-value=0.45  Score=32.78  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=29.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      ++|++++|.|.+..+|+-++..|++++.   .|+...
T Consensus       156 l~Gk~vvViGrS~iVG~Pla~lL~~~~a---tVt~ch  189 (284)
T PRK14190        156 ISGKHVVVVGRSNIVGKPVGQLLLNENA---TVTYCH  189 (284)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC---EEEEEe
Confidence            6799999999999999999999999976   666554

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=92.19  E-value=0.32  Score=33.47  Aligned_cols=38  Identities=18%  Similarity=0.347  Sum_probs=30.9

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ++++++|.|+.| .+++++..|++.|.  .+|+++.|..+.
T Consensus       125 ~~~~vlilGAGG-AarAv~~aL~~~g~--~~i~V~NRt~~r  162 (283)
T COG0169         125 TGKRVLILGAGG-AARAVAFALAEAGA--KRITVVNRTRER  162 (283)
T ss_pred             CCCEEEEECCcH-HHHHHHHHHHHcCC--CEEEEEeCCHHH
Confidence            478899988866 69999999999964  489999996543

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=92.18  E-value=0.37  Score=32.10  Aligned_cols=36  Identities=11%  Similarity=0.091  Sum_probs=29.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+++|.|++|.+|..+++.+...|.   .|+++.++.
T Consensus       138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~---~v~~~~~~~  173 (323)
T cd05282         138 PGDWVIQNAANSAVGRMLIQLAKLLGF---KTINVVRRD  173 (323)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCC---eEEEEecCh
Confidence            467999999999999999999998876   666666543

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=92.18  E-value=0.5  Score=31.90  Aligned_cols=35  Identities=29%  Similarity=0.453  Sum_probs=27.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+|.|.|++|.+|+.+++.+.+. .++..+-+++|.
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~-~~~elvav~d~~   36 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAA-EGLQLVAAFERH   36 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecC
Confidence            47999999999999999998876 455455556643

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.12  E-value=0.41  Score=32.37  Aligned_cols=34  Identities=15%  Similarity=0.213  Sum_probs=28.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|.|.|+ |.+|..++..|.+.|+   .|+..++++.
T Consensus         4 ~kIaViGa-G~mG~~iA~~la~~G~---~V~l~d~~~~   37 (287)
T PRK08293          4 KNVTVAGA-GVLGSQIAFQTAFHGF---DVTIYDISDE   37 (287)
T ss_pred             cEEEEECC-CHHHHHHHHHHHhcCC---eEEEEeCCHH
Confidence            47888875 9999999999999987   7888888654

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=92.11  E-value=0.34  Score=33.17  Aligned_cols=36  Identities=25%  Similarity=0.299  Sum_probs=27.9

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+|+|+|+ |.+|...+..+...|.  ..|+++++++
T Consensus       169 ~g~~VlV~G~-G~vG~~aiqlak~~G~--~~Vi~~~~~~  204 (343)
T PRK09880        169 QGKRVFVSGV-GPIGCLIVAAVKTLGA--AEIVCADVSP  204 (343)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCC--cEEEEEeCCH
Confidence            4789999986 9999999988777754  3577777654

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=92.11  E-value=0.32  Score=33.88  Aligned_cols=35  Identities=14%  Similarity=0.252  Sum_probs=28.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++.+++|+|++|.+|...+..+...|.   .+++++++
T Consensus       193 ~g~~vlV~ga~g~iG~a~~~lak~~G~---~vv~~~~s  227 (393)
T cd08246         193 PGDNVLIWGASGGLGSMAIQLARAAGA---NPVAVVSS  227 (393)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC---eEEEEeCC
Confidence            467999999999999999988888876   55555553

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=92.09  E-value=0.54  Score=30.76  Aligned_cols=36  Identities=14%  Similarity=0.209  Sum_probs=29.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .++.+++|.|++|.+|..++..+...|.   .|+++.++
T Consensus       143 ~~~~~vlv~g~~g~~g~~~~~~a~~~g~---~v~~~~~~  178 (309)
T cd05289         143 KAGQTVLIHGAAGGVGSFAVQLAKARGA---RVIATASA  178 (309)
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCC---EEEEEecc
Confidence            3578999999999999999998888876   56666653

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=92.09  E-value=0.34  Score=31.98  Aligned_cols=34  Identities=21%  Similarity=0.428  Sum_probs=26.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+++|.|+ |-+|..+++.|.+.|+   .|..+.+++.
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~---~Vv~Id~d~~   34 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGH---NVVLIDRDEE   34 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCC---ceEEEEcCHH
Confidence            45666555 5569999999999998   7788877543

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=92.05  E-value=0.28  Score=34.93  Aligned_cols=37  Identities=19%  Similarity=0.198  Sum_probs=28.8

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .++..+|+|.|+.| +|+.++..|...|.  ..+..++.+
T Consensus        39 ~L~~~~VlviG~GG-lGs~va~~La~~Gv--g~i~lvD~D   75 (392)
T PRK07878         39 RLKNARVLVIGAGG-LGSPTLLYLAAAGV--GTLGIVEFD   75 (392)
T ss_pred             HHhcCCEEEECCCH-HHHHHHHHHHHcCC--CeEEEECCC
Confidence            46788999987765 79999999999964  467766654

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=92.04  E-value=0.57  Score=30.60  Aligned_cols=37  Identities=22%  Similarity=0.413  Sum_probs=27.5

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCC-CcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCP-GIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~-~~~~V~~l~r~   62 (82)
                      +.++|.|.| +|.+|..++..|++.+. .+..+++..|+
T Consensus         3 ~~~kI~iIG-~G~mg~ala~~l~~~~~~~~~~i~~~~~~   40 (245)
T PRK07634          3 KKHRILFIG-AGRMAEAIFSGLLKTSKEYIEEIIVSNRS   40 (245)
T ss_pred             CCCeEEEEC-cCHHHHHHHHHHHhCCCCCcCeEEEECCC
Confidence            356899998 68999999999998863 34346666664

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=92.03  E-value=0.45  Score=33.55  Aligned_cols=39  Identities=15%  Similarity=0.106  Sum_probs=33.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +.+++|+|.|+ |=+|.-.+++|.+.|.  ..|+...|....
T Consensus       172 l~~k~vLvIGa-Gem~~l~a~~L~~~g~--~~i~v~nRt~~~  210 (338)
T PRK00676        172 SKKASLLFIGY-SEINRKVAYYLQRQGY--SRITFCSRQQLT  210 (338)
T ss_pred             ccCCEEEEEcc-cHHHHHHHHHHHHcCC--CEEEEEcCCccc
Confidence            67899999999 8999999999999964  478888887543

>PLN00203 glutamyl-tRNA reductase

Probab=92.02  E-value=0.38  Score=35.71  Aligned_cols=38  Identities=29%  Similarity=0.461  Sum_probs=31.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.+++|+|.|+ |-+|..+++.|...|.  ..|++..|+..
T Consensus       264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~--~~V~V~nRs~e  301 (519)
T PLN00203        264 HASARVLVIGA-GKMGKLLVKHLVSKGC--TKMVVVNRSEE  301 (519)
T ss_pred             CCCCEEEEEeC-HHHHHHHHHHHHhCCC--CeEEEEeCCHH
Confidence            56799999999 9999999999998863  47888888643

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=91.99  E-value=0.4  Score=32.46  Aligned_cols=35  Identities=17%  Similarity=0.298  Sum_probs=28.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ++|.|.|+ |.+|..++..|+..|+   .|+..++++..
T Consensus         4 ~~I~ViGa-G~mG~~iA~~la~~G~---~V~l~d~~~~~   38 (291)
T PRK06035          4 KVIGVVGS-GVMGQGIAQVFARTGY---DVTIVDVSEEI   38 (291)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhcCC---eEEEEeCCHHH
Confidence            57888865 8999999999999987   78888876543

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=91.98  E-value=0.56  Score=31.74  Aligned_cols=33  Identities=18%  Similarity=0.316  Sum_probs=28.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +.+++|+|++|.+|..++..+...|.   .|+++.+
T Consensus       163 g~~vlI~g~~g~ig~~~~~~a~~~G~---~v~~~~~  195 (350)
T cd08248         163 GKRVLILGGSGGVGTFAIQLLKAWGA---HVTTTCS  195 (350)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC---eEEEEeC
Confidence            78999999999999999998888876   5666665

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=91.95  E-value=0.42  Score=31.95  Aligned_cols=35  Identities=29%  Similarity=0.289  Sum_probs=28.6

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+.+++|.|++|.+|...++.....|.   .|++++..
T Consensus       146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~---~vi~~~~~  180 (324)
T cd08288         146 GDGPVLVTGAAGGVGSVAVALLARLGY---EVVASTGR  180 (324)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEeCC
Confidence            357999999999999999998888876   56666543

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.94  E-value=0.59  Score=32.19  Aligned_cols=34  Identities=12%  Similarity=0.303  Sum_probs=29.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      +.||+++|.|.+..+|+-++..|++++.   .|+...
T Consensus       154 l~Gk~vvViGrS~iVGkPla~lL~~~~a---tVtich  187 (282)
T PRK14169        154 VAGKRVVIVGRSNIVGRPLAGLMVNHDA---TVTIAH  187 (282)
T ss_pred             CCCCEEEEECCCccchHHHHHHHHHCCC---EEEEEC
Confidence            6799999999999999999999999976   666553

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=91.91  E-value=0.51  Score=31.20  Aligned_cols=35  Identities=14%  Similarity=0.224  Sum_probs=29.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+.+|+|.|++|.+|..+++.+...|.   .|+++.++
T Consensus       142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~---~v~~~~~~  176 (320)
T cd08243         142 PGDTLLIRGGTSSVGLAALKLAKALGA---TVTATTRS  176 (320)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHcCC---EEEEEeCC
Confidence            478999999999999999999888876   57766654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=91.91  E-value=0.42  Score=32.40  Aligned_cols=33  Identities=27%  Similarity=0.329  Sum_probs=27.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|.|.|+ |.+|..++..|.+.|+   .|...+|++
T Consensus         2 mkI~iiG~-G~mG~~~a~~L~~~g~---~V~~~~r~~   34 (325)
T PRK00094          2 MKIAVLGA-GSWGTALAIVLARNGH---DVTLWARDP   34 (325)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC---EEEEEECCH
Confidence            46888875 8999999999999987   678888754

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=91.89  E-value=0.64  Score=32.21  Aligned_cols=36  Identities=19%  Similarity=0.169  Sum_probs=29.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|.|+|+ |.+|..++..|+..+ -+.+++.++....
T Consensus         4 ~Ki~IiGa-G~VG~~~a~~l~~~~-~~~el~LiD~~~~   39 (312)
T cd05293           4 NKVTVVGV-GQVGMACAISILAKG-LADELVLVDVVED   39 (312)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeCCcc
Confidence            58999996 999999999988885 3457888887553

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=91.89  E-value=0.49  Score=32.41  Aligned_cols=33  Identities=24%  Similarity=0.307  Sum_probs=24.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|+| +|.|.+|+.+++.|.+.|+   .+.++.++.
T Consensus         4 ~~v~I-vG~GliG~s~a~~l~~~g~---~v~i~g~d~   36 (279)
T COG0287           4 MKVGI-VGLGLMGGSLARALKEAGL---VVRIIGRDR   36 (279)
T ss_pred             cEEEE-ECCchHHHHHHHHHHHcCC---eEEEEeecC
Confidence            44555 5599999999999999998   454444443

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=91.85  E-value=0.39  Score=30.43  Aligned_cols=33  Identities=27%  Similarity=0.236  Sum_probs=25.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +|+|.|+ |.+|+.+++.|.+.|.  ..++.++.+.
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gv--g~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGV--GNLKLVDFDV   33 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC--CeEEEEeCCE
Confidence            4778775 7789999999999965  4677777653

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=91.84  E-value=0.59  Score=30.80  Aligned_cols=27  Identities=30%  Similarity=0.303  Sum_probs=24.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCP   51 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~   51 (82)
                      +++++|+|.| -|-+|+++++.|.+.|.
T Consensus        21 l~g~~vaIqG-fGnVG~~~a~~L~~~G~   47 (217)
T cd05211          21 LEGLTVAVQG-LGNVGWGLAKKLAEEGG   47 (217)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHcCC
Confidence            6789999988 58899999999999976

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PLN02928 oxidoreductase family protein

Probab=91.83  E-value=0.5  Score=33.15  Aligned_cols=36  Identities=22%  Similarity=0.287  Sum_probs=31.1

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+.|+++.|.|- |-||+.+++.|...|.   .|++.+|.
T Consensus       156 ~l~gktvGIiG~-G~IG~~vA~~l~afG~---~V~~~dr~  191 (347)
T PLN02928        156 TLFGKTVFILGY-GAIGIELAKRLRPFGV---KLLATRRS  191 (347)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHhhCCC---EEEEECCC
Confidence            377899999887 8899999999999987   78888875

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=91.82  E-value=0.52  Score=30.85  Aligned_cols=35  Identities=14%  Similarity=0.138  Sum_probs=29.2

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++.+++|.|++|.+|..+++.+...|.   .|++.+++
T Consensus       136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~---~v~~~~~~  170 (320)
T cd05286         136 PGDTVLVHAAAGGVGLLLTQWAKALGA---TVIGTVSS  170 (320)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCC---EEEEEcCC
Confidence            578999999999999999998888876   66666654

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	82
4dqv_A	478	Crystal Structure Of Reductase (R) Domain Of Non-Ri		5e-04

>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal Peptide Synthetase From Mycobacterium Tuberculosis Length = 478

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 12  NMPAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGR 71
           N+P PS  +      R+V +TG TGF+G+ LV +LLR       +  L+R +  +D   R
Sbjct: 65  NLPGPSPEL------RTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRR 118
Query: 72  LAEIINA 78
           L +  ++
Sbjct: 119 LEKTFDS 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	82
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	3e-15
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	1e-05
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	6e-05
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	8e-05
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	1e-04
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	3e-04
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	3e-04
1xq6_A	253	Unknown protein; structural genomics, protein stru	6e-04

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478

 Score = 67.6 bits (165), Expect = 3e-15
 Identities = 18/71 (25%), Positives = 33/71 (46%)

Query: 10  SSNMPAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDIN 69
           +  +           + R+V +TG TGF+G+ LV +LLR       +  L+R +  +D  
Sbjct: 57  ADTLATAVNLPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDAR 116

Query: 70  GRLAEIINAPL 80
            RL +  ++  
Sbjct: 117 RRLEKTFDSGD 127

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 7/32 (21%), Positives = 11/32 (34%)

Query: 17 STPVSEFYQNRSVFVTGGTGFMGKVLVEKLLR 48
            P+S    +    V G TG +G      +  
Sbjct: 4  EQPLSRPGAHVKYAVLGATGLLGHHAARAIRA 35

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242

 Score = 38.3 bits (89), Expect = 6e-05
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR 61
          QN+SVF+ G +G  G+VL++++L        + L+ R
Sbjct: 17 QNKSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGR 52

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357

 Score = 37.9 bits (88), Expect = 8e-05
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 21 SEFYQNRSVFVTGGTGFMGKVLVEKLLR 48
          + F+Q + VFVTG TGF G  L   L  
Sbjct: 4  NSFWQGKRVFVTGHTGFKGGWLSLWLQT 31

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 16 PSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQD 67
                    N+++ +TGGTG  GK  V K+L +    K I +  R +  Q 
Sbjct: 11 SMPNHQNMLDNQTILITGGTGSFGKCFVRKVLDT-TNAKKIIVYSRDELKQS 61

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215

 Score = 36.2 bits (84), Expect = 3e-04
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQD 67
           + V + G TG  G+ L++++L   P +  +    R    + 
Sbjct: 5  PKRVLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAEH 45

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313

 Score = 36.1 bits (83), Expect = 3e-04
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDI 68
          +   V + GGTG++GK +V   +         Y+L RP+   +I
Sbjct: 3  KKSRVLIVGGTGYIGKRIVNASISLG---HPTYVLFRPEVVSNI 43

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253

 Score = 35.2 bits (81), Expect = 6e-04
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINA 78
             +V VTG +G  G+++ +KL            L+R   G++  G  A++   
Sbjct: 3  NLPTVLVTGASGRTGQIVYKKLKEGSDKFV-AKGLVRSAQGKEKIGGEADVFIG 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	82
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	99.1
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.97
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	98.92
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	98.92
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	98.91
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	98.9
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	98.89
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	98.88
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	98.88
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	98.88
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	98.86
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	98.86
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	98.84
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	98.83
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	98.82
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	98.82
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	98.82
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	98.82
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	98.82
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	98.82
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	98.82
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	98.81
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	98.8
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	98.8
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	98.79
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	98.79
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	98.79
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	98.79
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	98.78
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	98.78
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	98.77
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	98.77
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	98.77
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	98.77
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	98.77
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	98.76
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	98.76
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	98.76
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	98.76
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	98.76
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	98.75
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	98.74
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	98.72
4f6c_A	427	AUSA reductase domain protein; thioester reductase	98.72
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	98.72
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	98.7
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	98.7
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	98.7
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	98.7
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	98.7
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	98.69
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	98.69
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	98.69
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	98.69
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	98.69
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	98.69
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	98.68
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	98.67
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	98.67
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	98.67
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	98.67
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	98.66
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	98.66
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	98.66
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	98.65
1xq6_A	253	Unknown protein; structural genomics, protein stru	98.65
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	98.65
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	98.65
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	98.65
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	98.65
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	98.65
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	98.65
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	98.64
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	98.64
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	98.64
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	98.64
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	98.64
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	98.64
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	98.64
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	98.64
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	98.64
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	98.64
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	98.63
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	98.63
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	98.63
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	98.63
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	98.63
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	98.63
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	98.62
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	98.62
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	98.62
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	98.62
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	98.62
4f6l_B	508	AUSA reductase domain protein; thioester reductase	98.62
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	98.62
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	98.62
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	98.62
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	98.62
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	98.61
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	98.61
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	98.61
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	98.61
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	98.61
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	98.61
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	98.61
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	98.61
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	98.61
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	98.6
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	98.6
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	98.6
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	98.6
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	98.6
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	98.6
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	98.6
1xq1_A	266	Putative tropinone reducatse; structural genomics,	98.6
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	98.6
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	98.59
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	98.59
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	98.59
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	98.59
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	98.59
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	98.59
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	98.59
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	98.59
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	98.59
3cxt_A	291	Dehydrogenase with different specificities; rossma	98.59
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	98.59
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	98.59
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	98.59
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	98.58
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	98.58
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	98.58
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	98.58
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	98.58
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	98.58
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	98.58
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	98.57
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	98.57
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	98.57
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	98.57
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	98.57
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	98.57
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	98.57
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	98.57
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	98.57
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	98.56
3rih_A	293	Short chain dehydrogenase or reductase; structural	98.56
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	98.56
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	98.56
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	98.56
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	98.56
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	98.56
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	98.56
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	98.56
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	98.56
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	98.56
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	98.55
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	98.55
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	98.55
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	98.55
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	98.55
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	98.55
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	98.55
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	98.54
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	98.54
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	98.54
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	98.54
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	98.54
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	98.54
3imf_A	257	Short chain dehydrogenase; structural genomics, in	98.54
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	98.54
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	98.54
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	98.54
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	98.54
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	98.53
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	98.53
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	98.53
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	98.53
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	98.53
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	98.53
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	98.53
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	98.53
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	98.52
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	98.52
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	98.52
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	98.52
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	98.52
1spx_A	278	Short-chain reductase family member (5L265); paral	98.52
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	98.52
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	98.52
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	98.52
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	98.52
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	98.52
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	98.52
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	98.52
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	98.51
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	98.51
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	98.51
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	98.51
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	98.51
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	98.51
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	98.51
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	98.51
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	98.5
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	98.5
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	98.5
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	98.5
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	98.5
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.5
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	98.5
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	98.5
4dqx_A	277	Probable oxidoreductase protein; structural genomi	98.5
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	98.5
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	98.49
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	98.49
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	98.49
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	98.49
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	98.49
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	98.49
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	98.49
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	98.49
1xkq_A	280	Short-chain reductase family member (5D234); parra	98.49
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	98.49
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.49
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	98.48
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	98.48
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	98.48
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	98.48
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	98.48
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	98.48
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	98.48
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	98.47
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	98.47
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	98.47
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	98.47
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	98.47
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	98.46
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	98.46
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	98.46
1xhl_A	297	Short-chain dehydrogenase/reductase family member	98.45
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	98.45
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	98.45
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	98.45
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	98.45
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.44
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.44
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	98.43
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	98.43
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	98.43
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.43
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	98.43
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	98.42
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	98.42
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	98.42
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	98.42
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	98.41
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	98.41
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	98.41
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	98.41
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	98.41
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	98.4
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	98.4
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	98.4
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	98.4
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	98.39
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	98.39
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	98.38
4e4y_A	244	Short chain dehydrogenase family protein; structur	98.38
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	98.37
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	98.37
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	98.36
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	98.36
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	98.35
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	98.35
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	98.35
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	98.35
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	98.34
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.34
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	98.33
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	98.33
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	98.3
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	98.3
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	98.29
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	98.27
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	98.26
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	98.26
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	98.25
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	98.24
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	98.23
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	98.22
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	98.21
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	98.2
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	98.18
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	98.18
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	98.15
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	98.12
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	98.12
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	98.1
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	98.1
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	98.1
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	98.08
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	98.07
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.05
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	98.05
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	98.02
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	98.0
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	97.82
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	97.72
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	97.69
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	97.65
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	97.6
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	97.6
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	97.6
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.57
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.54
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.53
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.53
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.49
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.42
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	97.41
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	97.41
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	97.37
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	97.35
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.3
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	97.3
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	97.28
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	97.26
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	97.23
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	97.2
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	97.16
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.15
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.15
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	97.14
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	97.12
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.08
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.06
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	97.04
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	96.98
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.91
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.89
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	96.89
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	96.88
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.85
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.83
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.81
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	96.8
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.78
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.77
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.75
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.74
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.73
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	96.72
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.66
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.65
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.65
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.62
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	96.6
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	96.58
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	96.57
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	96.57
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.56
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.53
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.53
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.52
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.49
1p9o_A	313	Phosphopantothenoylcysteine synthetase; ligase; 2.	96.48
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.46
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	96.37
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	96.32
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	96.31
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.27
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	96.27
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	96.26
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.25
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.23
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	96.22
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.2
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	96.18
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	96.18
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.18
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.17
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.17
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	96.11
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	96.09
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.07
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	96.04
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.03
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.03
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	95.97
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	95.93
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	95.93
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	95.89
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.88
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	95.88
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	95.87
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	95.87
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.85
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	95.85
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	95.84
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	95.83
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	95.83
2duw_A	145	Putative COA-binding protein; ligand binding prote	95.79
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	95.78
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	95.76
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	95.75
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	95.74
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	95.73
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	95.73
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	95.67
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.6
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	95.58
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	95.54
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	95.51
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	95.48
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	95.47
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	95.47
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	95.46
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	95.45
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	95.42
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.36
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	95.34
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.32
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	95.24
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	95.24
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	95.23
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.2
3l07_A	285	Bifunctional protein fold; structural genomics, ID	95.18
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	95.15
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.13
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	95.13
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	95.13
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	95.12
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	95.1
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	95.05
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	95.05
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	95.04
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	95.03
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.01
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.98
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.96
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	94.96
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	94.94
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.92
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	94.9
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	94.89
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	94.87
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	94.86
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	94.84
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	94.79
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	94.78
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	94.76
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	94.75
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.72
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	94.68
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	94.67
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	94.65
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	94.63
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	94.61
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.61
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	94.59
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	94.57
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	94.57
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	94.46
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	94.45
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	94.44
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	94.43
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	94.43
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	94.41
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	94.38
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	94.35
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.35
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	94.26
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	94.22
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	94.22
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	94.19
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	94.17
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	94.16
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.16
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	94.15
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.15
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.14
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	94.14
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	94.11
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	94.11
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	94.09
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	94.06
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	94.02
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.01
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	94.0
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	93.99
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	93.96
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	93.92
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	93.91
3tl2_A	315	Malate dehydrogenase; center for structural genomi	93.91
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	93.9
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	93.89
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	93.88
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	93.87
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	93.85
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	93.84

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=99.10  E-value=1.4e-10  Score=76.42  Aligned_cols=36  Identities=33%  Similarity=0.483  Sum_probs=32.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      |+|||||||||||++++++|+++|+   +|++++|++..
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~---~V~~l~R~~~~   36 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGH---EVTLVSRKPGP   36 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCCCc
Confidence            5799999999999999999999999   89999997543

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.97  E-value=8.5e-10  Score=70.47  Aligned_cols=41  Identities=20%  Similarity=0.353  Sum_probs=34.2

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ..+++|+|+||||+|+||++++++|+++|+   .|++++|++..
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~---~V~~~~R~~~~   57 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGH---EPVAMVRNEEQ   57 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSGGG
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCC---eEEEEECChHH
Confidence            347899999999999999999999999988   89999997543

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=98.92  E-value=2e-09  Score=72.53  Aligned_cols=38  Identities=24%  Similarity=0.520  Sum_probs=34.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHH--hCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLR--SCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~--~g~~~~~V~~l~r~~~   64 (82)
                      +++++|+||||+||||++++++|++  .|+   .|++++|...
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~---~V~~~~r~~~   47 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKA---KVVVLDKFRS   47 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTS---EEEEEECCCC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCC---eEEEEECCCc
Confidence            5679999999999999999999999  777   8999998543

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=98.92  E-value=2.1e-09  Score=71.23  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=34.8

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ..+++++|+||||+||||++++++|+++|+   .|++++|+.
T Consensus         7 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~r~~   45 (342)
T 1y1p_A            7 VLPEGSLVLVTGANGFVASHVVEQLLEHGY---KVRGTARSA   45 (342)
T ss_dssp             SSCTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             cCCCCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            346789999999999999999999999988   899999864

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=98.91  E-value=1.6e-09  Score=72.30  Aligned_cols=39  Identities=18%  Similarity=0.196  Sum_probs=31.5

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ..++|+|+||||+||||++++++|+++|+   .|++++|...
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~---~V~~~~r~~~   54 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRTQGR---TVRGFDLRPS   54 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTC---CEEEEESSCC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCC---EEEEEeCCCC
Confidence            36789999999999999999999999988   8899998753

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=98.90  E-value=3.9e-09  Score=70.24  Aligned_cols=37  Identities=30%  Similarity=0.511  Sum_probs=33.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +++|+||||+||||++++++|+++|+   .|+++.|+...
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~---~V~~~~r~~~~   45 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY---AVNTTVRDPDN   45 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC---EEEEEESCTTC
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC---EEEEEEcCcch
Confidence            68999999999999999999999988   88888886543

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=98.89  E-value=3.3e-09  Score=70.89  Aligned_cols=40  Identities=28%  Similarity=0.406  Sum_probs=35.7

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ..+++++|+||||+||||++++++|+++|+   .|++++|...
T Consensus        21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   60 (351)
T 3ruf_A           21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQ---VVIGLDNFST   60 (351)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSS
T ss_pred             CCCCCCeEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCCC
Confidence            336789999999999999999999999988   8999999654

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=98.88  E-value=2.7e-09  Score=69.71  Aligned_cols=50  Identities=12%  Similarity=0.165  Sum_probs=41.0

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCccHHHHHHHHHh
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIIN   77 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~~~~~~~~~~~   77 (82)
                      ..++|+||||+||||++++++|+++|+   .|++++|..-+....+.+.++++
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~Dl~d~~~~~~~~~   60 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNV---EVIPTDVQDLDITNVLAVNKFFN   60 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSE---EEEEECTTTCCTTCHHHHHHHHH
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCC---eEEeccCccCCCCCHHHHHHHHH
Confidence            357999999999999999999999987   89999997666555566666554

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=98.88  E-value=3.2e-09  Score=70.79  Aligned_cols=40  Identities=23%  Similarity=0.350  Sum_probs=35.6

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +..+++|+|+||||+||||++++++|+++|+   .|++++|..
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~---~V~~~~r~~   54 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGH---EILVIDNFA   54 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTC---EEEEEECCS
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCC
Confidence            4457889999999999999999999999987   899999853

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=98.88  E-value=3.4e-09  Score=70.26  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=33.6

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ++|+|+||||+||||++++++|+++|+   .|++++|+...
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~   39 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGY---EVYGADRRSGE   39 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECSCCST
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEECCCcc
Confidence            468999999999999999999999988   89999997543

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=98.86  E-value=3.3e-09  Score=69.73  Aligned_cols=38  Identities=26%  Similarity=0.473  Sum_probs=33.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++|+||||+||||++++++|+++|+   .|++++|...
T Consensus         5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   42 (321)
T 3vps_A            5 TLKHRILITGGAGFIGGHLARALVASGE---EVTVLDDLRV   42 (321)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC---CEEEECCCSS
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHHCCC---EEEEEecCCc
Confidence            4568999999999999999999999988   8999998654

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=98.86  E-value=5.1e-09  Score=70.23  Aligned_cols=40  Identities=33%  Similarity=0.367  Sum_probs=35.6

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ..+++++|+||||+||||++++++|+++|+   .|++++|+..
T Consensus         5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   44 (357)
T 1rkx_A            5 SFWQGKRVFVTGHTGFKGGWLSLWLQTMGA---TVKGYSLTAP   44 (357)
T ss_dssp             HHHTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCS
T ss_pred             hhhCCCEEEEECCCchHHHHHHHHHHhCCC---eEEEEeCCCc
Confidence            346789999999999999999999999988   8999998654

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=98.84  E-value=6.3e-09  Score=70.11  Aligned_cols=38  Identities=18%  Similarity=0.410  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRS-CPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~-g~~~~~V~~l~r~~~   64 (82)
                      +++|+|+||||+||||++++++|+++ |+   .|++++|+..
T Consensus        22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~---~V~~~~r~~~   60 (372)
T 3slg_A           22 MKAKKVLILGVNGFIGHHLSKRILETTDW---EVFGMDMQTD   60 (372)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHHSSC---EEEEEESCCT
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCC---EEEEEeCChh
Confidence            56789999999999999999999999 77   8999999754

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=98.83  E-value=5.4e-09  Score=68.94  Aligned_cols=35  Identities=34%  Similarity=0.587  Sum_probs=31.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC-CC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR-PK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r-~~   63 (82)
                      +|+|+||||+||||++++++|+++|+   .|+++.| ++
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~---~V~~~~r~~~   36 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGY---SVNTTIRADP   36 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEECCCC-
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCC---EEEEEEeCCc
Confidence            57899999999999999999999988   8888888 43

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=98.82  E-value=3.8e-09  Score=69.58  Aligned_cols=38  Identities=24%  Similarity=0.307  Sum_probs=34.5

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++++++||||+|+||++++++|+++|+   .|++++|+.
T Consensus        23 ~l~~k~vlITGasggiG~~la~~L~~~G~---~V~~~~r~~   60 (302)
T 1w6u_A           23 SFQGKVAFITGGGTGLGKGMTTLLSSLGA---QCVIASRKM   60 (302)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            37789999999999999999999999988   888888864

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=98.82  E-value=5.5e-09  Score=73.42  Aligned_cols=47  Identities=38%  Similarity=0.606  Sum_probs=38.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHh---CCCcceEEEEeCCCCCccHHHHHH
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRS---CPGIKNIYLLMRPKHGQDINGRLA   73 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~---g~~~~~V~~l~r~~~~~~~~~~~~   73 (82)
                      .++++|+||||+||||++++++|++.   |+   +|++++|+........++.
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~---~V~~l~R~~~~~~~~~~l~  120 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDG---RLICLVRAESDEDARRRLE  120 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTC---EEEEEECSSSHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCC---EEEEEECCCCcHHHHHHHH
Confidence            45789999999999999999999999   66   8999999876544444443

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=98.82  E-value=7.1e-09  Score=64.99  Aligned_cols=35  Identities=17%  Similarity=0.251  Sum_probs=31.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+|+||||+||||++++++|+++|+   .|++++|++.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~~   35 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH---EVTAIVRNAG   35 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCSH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC---EEEEEEcCch
Confidence            4799999999999999999999987   8999999753

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=98.82  E-value=4.1e-09  Score=68.72  Aligned_cols=48  Identities=23%  Similarity=0.334  Sum_probs=40.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCccHHHHHHHHHh
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIIN   77 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~~~~~~~~~~~   77 (82)
                      ++|+||||+||||++++++|+++|+   .|++++|..-+....+.+.++++
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~D~~d~~~~~~~~~   53 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY---DIYPFDKKLLDITNISQVQQVVQ   53 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE---EEEEECTTTSCTTCHHHHHHHHH
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC---EEEEecccccCCCCHHHHHHHHH
Confidence            4899999999999999999999987   89999997766666666666655

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=98.82  E-value=7.2e-09  Score=69.18  Aligned_cols=39  Identities=23%  Similarity=0.242  Sum_probs=32.5

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ..+++++|+||||+||||++++++|+++|+   .|++++|..
T Consensus        17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~r~~   55 (333)
T 2q1w_A           17 RGSHMKKVFITGICGQIGSHIAELLLERGD---KVVGIDNFA   55 (333)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCS
T ss_pred             ecCCCCEEEEeCCccHHHHHHHHHHHHCCC---EEEEEECCC
Confidence            346789999999999999999999999987   899999864

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=98.82  E-value=5e-09  Score=69.76  Aligned_cols=37  Identities=35%  Similarity=0.523  Sum_probs=32.2

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++++|+||||+||||++++++|+++|+   .|+++.|+..
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~---~V~~~~r~~~   40 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGY---TVRATVRDPT   40 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCTT
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC---EEEEEECCcc
Confidence            468999999999999999999999988   8888888754

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=98.82  E-value=8.1e-09  Score=68.88  Aligned_cols=39  Identities=28%  Similarity=0.444  Sum_probs=31.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++|+|+||||+||||++++++|+++|+.+ .|++++|..
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~-~v~~~~~~~   60 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETY-KIINFDALT   60 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTE-EEEEEECCC
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCc-EEEEEeccc
Confidence            567899999999999999999999998543 777777753

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=98.81  E-value=7.3e-09  Score=69.48  Aligned_cols=35  Identities=31%  Similarity=0.649  Sum_probs=31.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++|+|||||||+|+++++.|++.|+   .|++++|+.
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~---~V~~l~R~~   44 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHR---PTYILARPG   44 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTC---CEEEEECSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC---CEEEEECCC
Confidence            57899999999999999999999987   899999976

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=98.80  E-value=9.6e-09  Score=68.21  Aligned_cols=36  Identities=22%  Similarity=0.397  Sum_probs=32.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .|+|+||||+||||++++++|+++|+   .|++++|+..
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   48 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAGH---DLVLIHRPSS   48 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECTTS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEecChH
Confidence            36899999999999999999999987   8999999754

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=98.80  E-value=7.8e-09  Score=69.86  Aligned_cols=45  Identities=31%  Similarity=0.558  Sum_probs=35.7

Q ss_pred             CCChhhhccCcEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEeCCC
Q psy16528         17 STPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRS-CPGIKNIYLLMRPK   63 (82)
Q Consensus        17 ~~~~~~~~~~~~ilItG~tG~iG~~i~~~l~~~-g~~~~~V~~l~r~~   63 (82)
                      +..+.+++++|+|+||||+||||++++++|++. |+  ..|++++|++
T Consensus        12 ~~~~~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~--~~V~~~~r~~   57 (344)
T 2gn4_A           12 MPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNA--KKIIVYSRDE   57 (344)
T ss_dssp             ----CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCC--SEEEEEESCH
T ss_pred             CccHHHhhCCCEEEEECCCcHHHHHHHHHHHhhCCC--CEEEEEECCh
Confidence            335556688999999999999999999999999 74  2788899864

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=98.79  E-value=1.1e-08  Score=63.44  Aligned_cols=36  Identities=17%  Similarity=0.310  Sum_probs=32.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +|+|+||||+|+||++++++|+++|+   +|++++|++.
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~---~V~~~~r~~~   38 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGY---EVTVLVRDSS   38 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCGG
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC---eEEEEEeChh
Confidence            37899999999999999999999987   8999998643

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=98.79  E-value=8.2e-09  Score=70.02  Aligned_cols=37  Identities=19%  Similarity=0.302  Sum_probs=30.8

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+++++|+||||+||||++++++|+++|+   .|++++|.
T Consensus         8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~---~V~~~~r~   44 (404)
T 1i24_A            8 HHHGSRVMVIGGDGYCGWATALHLSKKNY---EVCIVDNL   44 (404)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             ccCCCeEEEeCCCcHHHHHHHHHHHhCCC---eEEEEEec
Confidence            36789999999999999999999999988   88888774

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=98.79  E-value=1.5e-08  Score=67.31  Aligned_cols=38  Identities=21%  Similarity=0.404  Sum_probs=33.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      .+++|+||||+||||++++++|+++|+   .|++++|....
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~   41 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY---DVVIADNLVNS   41 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECCCSSS
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC---cEEEEecCCcc
Confidence            457999999999999999999999988   89999986544

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=98.79  E-value=1e-08  Score=64.59  Aligned_cols=34  Identities=24%  Similarity=0.348  Sum_probs=31.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|+||||+||||++++++|+++|+   .|++++|++
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~   34 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH---EVLAVVRDP   34 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC---EEEEEEecc
Confidence            4799999999999999999999988   899999964

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=98.78  E-value=1.1e-08  Score=68.25  Aligned_cols=38  Identities=24%  Similarity=0.475  Sum_probs=32.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++|+||||+||||++++++|+++|+   .|++++|...
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   62 (343)
T 2b69_A           25 KDRKRILITGGAGFVGSHLTDKLMMDGH---EVTVVDNFFT   62 (343)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSS
T ss_pred             cCCCEEEEEcCccHHHHHHHHHHHHCCC---EEEEEeCCCc
Confidence            5678999999999999999999999987   8999998643

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=98.78  E-value=1.7e-08  Score=65.42  Aligned_cols=41  Identities=22%  Similarity=0.365  Sum_probs=36.1

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ...+++|+++||||+|+||.+++++|+++|+   .|++++|+..
T Consensus         7 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~   47 (252)
T 3f1l_A            7 QDLLNDRIILVTGASDGIGREAAMTYARYGA---TVILLGRNEE   47 (252)
T ss_dssp             TTTTTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             ccccCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            3458899999999999999999999999988   8888888643

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.77  E-value=1.2e-08  Score=67.62  Aligned_cols=37  Identities=32%  Similarity=0.318  Sum_probs=32.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+++|+||||+||||++++++|+++|+   .|++++|...
T Consensus        13 ~~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   49 (335)
T 1rpn_A           13 MTRSALVTGITGQDGAYLAKLLLEKGY---RVHGLVARRS   49 (335)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCS
T ss_pred             cCCeEEEECCCChHHHHHHHHHHHCCC---eEEEEeCCCc
Confidence            368999999999999999999999987   8999998754

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=98.77  E-value=1.3e-08  Score=67.16  Aligned_cols=34  Identities=35%  Similarity=0.595  Sum_probs=31.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|+||||+||||++++++|+++|+   .|++++|.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~   35 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN---TPIILTRS   35 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC---EEEEEeCC
Confidence            37899999999999999999999988   89999997

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=98.77  E-value=1.3e-08  Score=67.19  Aligned_cols=38  Identities=24%  Similarity=0.384  Sum_probs=32.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++-++|+||||+||||++++++|+++|+   .|++++|...
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~---~V~~~~r~~~   47 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTEQNV---EVFGTSRNNE   47 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCTT
T ss_pred             cCcceEEEECCCChHHHHHHHHHHHCCC---EEEEEecCCc
Confidence            4568999999999999999999999987   8999998753

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=98.77  E-value=8.5e-09  Score=67.98  Aligned_cols=35  Identities=26%  Similarity=0.351  Sum_probs=30.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +|+|+||||+||||++++++|+++|+   .|++++|+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~   36 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNW---HAVGCGFRR   36 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEC---
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC---eEEEEccCC
Confidence            57899999999999999999999987   899998764

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=98.77  E-value=1.4e-08  Score=68.76  Aligned_cols=35  Identities=31%  Similarity=0.322  Sum_probs=31.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|+||||+||||+++++.|+++|+   .|++++|...
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~---~V~~~~r~~~   63 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY---EVHGLIRRSS   63 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC---EEEEEecCCc
Confidence            6899999999999999999999987   8999998653

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=98.76  E-value=8.5e-09  Score=65.12  Aligned_cols=35  Identities=31%  Similarity=0.457  Sum_probs=32.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+|+||||+||||++++++|+++|+   .|++++|++.
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~---~V~~~~R~~~   35 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY---QIYAGARKVE   35 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC---EEEEEESSGG
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCcc
Confidence            4799999999999999999999987   8999999754

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=98.76  E-value=1.5e-08  Score=68.75  Aligned_cols=39  Identities=31%  Similarity=0.475  Sum_probs=34.8

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhC-CCcceEEEEeCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSC-PGIKNIYLLMRPKH   64 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g-~~~~~V~~l~r~~~   64 (82)
                      .+++|+|+||||+||||++++++|+++| +   .|++++|...
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~---~V~~~~r~~~   68 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVN---QVHVVDNLLS   68 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCS---EEEEECCCTT
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCc---eEEEEECCCC
Confidence            3678999999999999999999999998 7   8999998643

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=98.76  E-value=1.3e-08  Score=66.84  Aligned_cols=35  Identities=31%  Similarity=0.529  Sum_probs=31.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+|+||||+||||++++++|+++|+   .|++++|...
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   35 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY---EVVVVDNLSS   35 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEECCCSS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC---EEEEEeCCCC
Confidence            5799999999999999999999988   8999988654

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=98.76  E-value=9.2e-09  Score=69.05  Aligned_cols=38  Identities=32%  Similarity=0.557  Sum_probs=30.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhC-CCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSC-PGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g-~~~~~V~~l~r~~~   64 (82)
                      +++|+|+||||+||||++++++|+++| +   .|++++|...
T Consensus        44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~---~V~~~~r~~~   82 (357)
T 2x6t_A           44 IEGRMIIVTGGAGFIGSNIVKALNDKGIT---DILVVDNLKD   82 (357)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCC---CEEEEECCSS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCc---EEEEEecCCC
Confidence            567899999999999999999999998 6   7888888654

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=98.76  E-value=1.2e-08  Score=67.96  Aligned_cols=37  Identities=19%  Similarity=0.442  Sum_probs=33.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhC-------CCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSC-------PGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g-------~~~~~V~~l~r~~   63 (82)
                      +++|+|+||||+||||++++++|+++|       +   .|++++|..
T Consensus        12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~---~V~~~~r~~   55 (342)
T 2hrz_A           12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVE---KFTLIDVFQ   55 (342)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEE---EEEEEESSC
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCc---eEEEEEccC
Confidence            578899999999999999999999997       5   788888864

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=98.75  E-value=8.6e-09  Score=65.13  Aligned_cols=35  Identities=20%  Similarity=0.482  Sum_probs=32.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|+||||+||||++++++|+++|+   .|++++|++.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   39 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF---EVTAVVRHPE   39 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC---EEEEECSCGG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC---EEEEEEcCcc
Confidence            6899999999999999999999987   8999999743

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=98.74  E-value=1.7e-08  Score=67.64  Aligned_cols=38  Identities=29%  Similarity=0.358  Sum_probs=34.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++|+||||+||||++++++|+++|+   .|++++|...
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   62 (352)
T 1sb8_A           25 AQPKVWLITGVAGFIGSNLLETLLKLDQ---KVVGLDNFAT   62 (352)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSS
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCCc
Confidence            5688999999999999999999999987   8999998653

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=98.72  E-value=2.1e-08  Score=64.03  Aligned_cols=37  Identities=22%  Similarity=0.301  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         5 ~~~~~vlVTGasggiG~~~a~~l~~~G~---~V~~~~r~~   41 (244)
T 1cyd_A            5 FSGLRALVTGAGKGIGRDTVKALHASGA---KVVAVTRTN   41 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999988   888888864

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=98.72  E-value=1.1e-08  Score=70.51  Aligned_cols=44  Identities=30%  Similarity=0.458  Sum_probs=35.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCccHHHHH
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRL   72 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~~~~~~   72 (82)
                      +++|+||||+||||++++++|++.|+   .|++++|+........++
T Consensus        69 ~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~R~~~~~~~~~~l  112 (427)
T 4f6c_A           69 LGNTLLTGATGFLGAYLIEALQGYSH---RIYCFIRADNEEIAWYKL  112 (427)
T ss_dssp             CEEEEEECTTSHHHHHHHHHHTTTEE---EEEEEEECSSHHHHHHHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHcCCC---EEEEEECCCChHHHHHHH
Confidence            56999999999999999999988876   899999987643333333

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=98.72  E-value=2.2e-08  Score=70.99  Aligned_cols=36  Identities=25%  Similarity=0.445  Sum_probs=33.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +|+|+||||+||||+++++.|++.|+   .|++++|+..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~---~V~~l~R~~~  182 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH---EVIQLVRKEP  182 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESSSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCCC
Confidence            67999999999999999999999988   8999999754

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=98.70  E-value=2.8e-08  Score=64.94  Aligned_cols=47  Identities=21%  Similarity=0.196  Sum_probs=36.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC----CCccHHHHHHHHHh
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK----HGQDINGRLAEIIN   77 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~----~~~~~~~~~~~~~~   77 (82)
                      |+|+||||+||||++++++|+ +|+   .|++++|+.    -+....+.+.++++
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~---~V~~~~r~~~~~~~D~~d~~~~~~~~~   51 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVG---NLIALDVHSKEFCGDFSNPKGVAETVR   51 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTS---EEEEECTTCSSSCCCTTCHHHHHHHHH
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCC---eEEEeccccccccccCCCHHHHHHHHH
Confidence            479999999999999999999 877   899999975    23333445555443

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=98.70  E-value=2.7e-08  Score=65.97  Aligned_cols=37  Identities=24%  Similarity=0.513  Sum_probs=31.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +|+|+||||+||||++++++|+++|.+. .|++++|..
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~-~V~~~~r~~   39 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDW-EVINIDKLG   39 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTC-EEEEEECCC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCC-EEEEEecCc
Confidence            5789999999999999999999997222 788888853

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=98.70  E-value=1.2e-08  Score=68.22  Aligned_cols=36  Identities=25%  Similarity=0.354  Sum_probs=32.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhC-----CCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSC-----PGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g-----~~~~~V~~l~r~~~   64 (82)
                      +|+|+||||+||||++++++|+++|     +   .|++++|...
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~---~V~~~~r~~~   41 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPW---KVYGVARRTR   41 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSE---EEEEEESSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCce---EEEEEeCCCC
Confidence            4789999999999999999999997     5   8999998643

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=98.70  E-value=2.8e-08  Score=66.19  Aligned_cols=35  Identities=29%  Similarity=0.393  Sum_probs=31.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +|+|+||||+||||++++++|+++|+   .|++++|..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~   36 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY---LPVVIDNFH   36 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC---CEEEEECSS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEecCC
Confidence            47899999999999999999999987   788888754

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=98.69  E-value=3.1e-08  Score=65.35  Aligned_cols=49  Identities=14%  Similarity=0.240  Sum_probs=37.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC-CccHHHHHHHHHh
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH-GQDINGRLAEIIN   77 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~-~~~~~~~~~~~~~   77 (82)
                      +|+|+||||+||||++++++|+++|+   .|+++.|... +....+.+.++++
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~---~v~~~~r~~~~D~~d~~~~~~~~~   52 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGD---VELVLRTRDELNLLDSRAVHDFFA   52 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT---EEEECCCTTTCCTTCHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC---eEEEEecCccCCccCHHHHHHHHH
Confidence            57899999999999999999999987   7888877532 3333455555554

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=98.69  E-value=1.8e-08  Score=66.09  Aligned_cols=37  Identities=24%  Similarity=0.336  Sum_probs=32.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHh--CCCcceEEEEeCCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRS--CPGIKNIYLLMRPKHG   65 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~--g~~~~~V~~l~r~~~~   65 (82)
                      +|+|+||||+||||++++++|+++  |+   .|++++|+...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~---~V~~~~r~~~~   40 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTE---NVIASDIRKLN   40 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGG---GEEEEESCCCS
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCC---EEEEEcCCCcc
Confidence            478999999999999999999998  77   78899886543

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=98.69  E-value=1.3e-08  Score=66.37  Aligned_cols=37  Identities=24%  Similarity=0.346  Sum_probs=33.0

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|+|+||||+|+||++++++|+++|+   .|++++|++.
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~---~V~~~~r~~~   38 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAE---ILRLADLSPL   38 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEE---EEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCC---EEEEEecCCc
Confidence            357899999999999999999999987   8899998753

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=98.69  E-value=4.9e-08  Score=64.16  Aligned_cols=42  Identities=19%  Similarity=0.325  Sum_probs=37.5

Q ss_pred             hhhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        20 ~~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+++|+||+++||||++.||+++++.|.++|.   .|++.+|+.+
T Consensus         5 ~~dlf~GK~alVTGas~GIG~aia~~la~~Ga---~Vv~~~~~~~   46 (242)
T 4b79_A            5 QHDIYAGQQVLVTGGSSGIGAAIAMQFAELGA---EVVALGLDAD   46 (242)
T ss_dssp             CTTTTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSTT
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            35678999999999999999999999999998   8888888654

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=98.69  E-value=2.2e-08  Score=65.87  Aligned_cols=37  Identities=19%  Similarity=0.286  Sum_probs=33.4

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+++|+++||||+|+||.+++++|+++|.   .|++++|.
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~   64 (273)
T 3uf0_A           28 SLAGRTAVVTGAGSGIGRAIAHGYARAGA---HVLAWGRT   64 (273)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEcCH
Confidence            37799999999999999999999999988   78888865

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=98.69  E-value=3.6e-08  Score=66.99  Aligned_cols=37  Identities=19%  Similarity=0.294  Sum_probs=33.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|+|+||||+||||++++++|+++|+   .|++++|...
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   64 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGH---YVIASDWKKN   64 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCC---eEEEEECCCc
Confidence            467999999999999999999999987   8999998754

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=98.68  E-value=3.8e-08  Score=63.09  Aligned_cols=36  Identities=19%  Similarity=0.274  Sum_probs=33.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++++++||||+|+||++++++|+++|+   .|++++|+
T Consensus         5 l~~k~vlVTGasggiG~~~a~~l~~~G~---~V~~~~r~   40 (258)
T 3afn_B            5 LKGKRVLITGSSQGIGLATARLFARAGA---KVGLHGRK   40 (258)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEECCC
Confidence            6789999999999999999999999988   88999987

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=98.67  E-value=4.1e-08  Score=62.67  Aligned_cols=35  Identities=23%  Similarity=0.270  Sum_probs=31.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+|+||||+||||++++++|+++|+   .|++++|+..
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~---~V~~~~r~~~   36 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH---TVIGIDRGQA   36 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSSS
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC---EEEEEeCChh
Confidence            5799999999999999999999988   8999999754

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=98.67  E-value=5.4e-08  Score=62.94  Aligned_cols=41  Identities=22%  Similarity=0.254  Sum_probs=34.6

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhC---CCcceEEEEeCCCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSC---PGIKNIYLLMRPKHG   65 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g---~~~~~V~~l~r~~~~   65 (82)
                      ..+++++++||||+|+||++++++|++.|   +   .|++++|+...
T Consensus        17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~---~V~~~~r~~~~   60 (267)
T 1sny_A           17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQ---HLFTTCRNREQ   60 (267)
T ss_dssp             ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCS---EEEEEESCTTS
T ss_pred             cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCc---EEEEEecChhh
Confidence            34778999999999999999999999998   6   89999997654

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=98.67  E-value=3.6e-08  Score=64.67  Aligned_cols=40  Identities=23%  Similarity=0.377  Sum_probs=35.2

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +..+++|+|+||||+|+||++++++|+++|.   .|++++|+.
T Consensus         9 ~~~~~~k~vlVTGas~GIG~aia~~l~~~G~---~V~~~~r~~   48 (269)
T 3vtz_A            9 MEEFTDKVAIVTGGSSGIGLAVVDALVRYGA---KVVSVSLDE   48 (269)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCC
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            4457899999999999999999999999998   788888865

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=98.67  E-value=5.2e-08  Score=63.10  Aligned_cols=38  Identities=18%  Similarity=0.274  Sum_probs=33.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.+|+++||||+|+||++++++|+++|+   .|++++|+..
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~---~V~~~~r~~~   57 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSW---NTISIDFREN   57 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCC
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCcc
Confidence            5589999999999999999999999988   8999998764

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=98.66  E-value=2.7e-08  Score=65.06  Aligned_cols=38  Identities=18%  Similarity=0.343  Sum_probs=33.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+++||||+|+||+++++.|+++|+   .|++++|+..
T Consensus        25 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~   62 (260)
T 3gem_A           25 LSSAPILITGASQRVGLHCALRLLEHGH---RVIISYRTEH   62 (260)
T ss_dssp             --CCCEEESSTTSHHHHHHHHHHHHTTC---CEEEEESSCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCChH
Confidence            6789999999999999999999999998   7888888754

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=98.66  E-value=5e-08  Score=62.95  Aligned_cols=38  Identities=24%  Similarity=0.336  Sum_probs=34.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++||||+|+||++++++|+++|+   .|++++|+..
T Consensus        10 ~~~k~vlVTGasggiG~~~a~~l~~~G~---~V~~~~r~~~   47 (265)
T 2o23_A           10 VKGLVAVITGGASGLGLATAERLVGQGA---SAVLLDLPNS   47 (265)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECTTS
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCcH
Confidence            6789999999999999999999999988   8888998754

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=98.66  E-value=4.6e-08  Score=66.25  Aligned_cols=36  Identities=25%  Similarity=0.472  Sum_probs=32.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHH-HhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLL-RSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~-~~g~~~~~V~~l~r~~~   64 (82)
                      +|+|+||||+||||++++++|+ ++|+   .|++++|...
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~---~V~~~~r~~~   38 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNH---SVVIVDSLVG   38 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC---EEEEEECCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCC---EEEEEecCCc
Confidence            4689999999999999999999 9987   8999988644

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=98.65  E-value=3.5e-08  Score=66.23  Aligned_cols=36  Identities=28%  Similarity=0.302  Sum_probs=30.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +|+|+||||+||||++++++|+++|+   .|++++|+..
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   36 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGY---EVHGIKRRAS   36 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECC---
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC---EEEEEECCCc
Confidence            36899999999999999999999987   8999988643

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=98.65  E-value=5.2e-08  Score=61.91  Aligned_cols=36  Identities=28%  Similarity=0.318  Sum_probs=32.2

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHh--CCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRS--CPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~--g~~~~~V~~l~r~~   63 (82)
                      ++++|+||||+|+||++++++|+++  |+   .|++++|++
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~---~V~~~~r~~   40 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF---VAKGLVRSA   40 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC---EEEEEESCH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc---EEEEEEcCC
Confidence            4689999999999999999999999  66   899999863

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=98.65  E-value=3e-08  Score=65.01  Aligned_cols=35  Identities=23%  Similarity=0.456  Sum_probs=32.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+||||||++|++++++|+++|+   .|++++|+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN---PTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC---CEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC---cEEEEECCC
Confidence            46899999999999999999999987   789999976

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=98.65  E-value=4.7e-08  Score=64.66  Aligned_cols=34  Identities=24%  Similarity=0.529  Sum_probs=31.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|+||||+||||++++++|+++|+   .|++++|..
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~   35 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGL---SVVVVDNLQ   35 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC---EEEEEeCCC
Confidence            5899999999999999999999987   888888854

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=98.65  E-value=4.8e-08  Score=63.27  Aligned_cols=40  Identities=13%  Similarity=0.223  Sum_probs=34.7

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ...+++|+++||||+|+||+++++.|+++|+   .|++++|+.
T Consensus        14 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~   53 (249)
T 1o5i_A           14 ELGIRDKGVLVLAASRGIGRAVADVLSQEGA---EVTICARNE   53 (249)
T ss_dssp             --CCTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             HhccCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            3447899999999999999999999999988   888888864

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=98.65  E-value=4.3e-08  Score=63.25  Aligned_cols=37  Identities=14%  Similarity=0.166  Sum_probs=33.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||+++++.|+++|+   .|++++|+.
T Consensus         5 ~~~k~vlITGasggiG~~la~~l~~~G~---~V~~~~r~~   41 (264)
T 2pd6_A            5 LRSALALVTGAGSGIGRAVSVRLAGEGA---TVAACDLDR   41 (264)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCh
Confidence            5689999999999999999999999987   888888863

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=98.65  E-value=4.2e-08  Score=65.09  Aligned_cols=35  Identities=34%  Similarity=0.518  Sum_probs=31.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRS-CPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~-g~~~~~V~~l~r~~~   64 (82)
                      |+|+||||+||||++++++|+++ |+   .|++++|+..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~---~V~~~~r~~~   36 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY---EVYGLDIGSD   36 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC---EEEEEESCCG
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC---EEEEEeCCcc
Confidence            57999999999999999999998 67   8999998643

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=98.65  E-value=6.2e-08  Score=62.24  Aligned_cols=38  Identities=21%  Similarity=0.200  Sum_probs=33.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++|+++||||+|+||++++++|+++|+   .|++++|+..
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   42 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNW---WVASIDVVEN   42 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESSCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCC---EEEEEeCChh
Confidence            4678999999999999999999999988   8888888753

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=98.64  E-value=6.4e-08  Score=62.06  Aligned_cols=39  Identities=23%  Similarity=0.353  Sum_probs=35.1

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ..+++|+++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus        10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~---~V~~~~r~~   48 (247)
T 3i1j_A           10 ELLKGRVILVTGAARGIGAAAARAYAAHGA---SVVLLGRTE   48 (247)
T ss_dssp             TTTTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             ccCCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEecCH
Confidence            347899999999999999999999999988   788888864

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=98.64  E-value=6.4e-08  Score=63.36  Aligned_cols=39  Identities=23%  Similarity=0.299  Sum_probs=35.2

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+++|+++||||+|+||.+++++|+++|+   .|++++|+..
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~   46 (271)
T 3tzq_B            8 ELENKVAIITGACGGIGLETSRVLARAGA---RVVLADLPET   46 (271)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECTTS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEcCCHH
Confidence            36789999999999999999999999998   8888888754

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.64  E-value=5.1e-08  Score=62.39  Aligned_cols=37  Identities=19%  Similarity=0.326  Sum_probs=33.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|+++||||+|+||++++++|+++|+   .|++++|+..
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~---~V~~~~r~~~   38 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGY---TVLNIDLSAN   38 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTE---EEEEEESSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEecCcc
Confidence            578999999999999999999999987   8888888754

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=98.64  E-value=5.5e-08  Score=63.15  Aligned_cols=39  Identities=18%  Similarity=0.261  Sum_probs=35.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +++|+++||||+|+||.++++.|+++|+   .|++++|+...
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~---~V~~~~r~~~~   43 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGF---TVFAGRRNGEK   43 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTC---EEEEEESSGGG
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            6789999999999999999999999988   88999986543

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=98.64  E-value=4.5e-08  Score=63.07  Aligned_cols=38  Identities=21%  Similarity=0.445  Sum_probs=34.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+..
T Consensus        12 ~~~k~vlITGasggiG~~~a~~l~~~G~---~V~~~~r~~~   49 (265)
T 1h5q_A           12 FVNKTIIVTGGNRGIGLAFTRAVAAAGA---NVAVIYRSAA   49 (265)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE---EEEEEESSCT
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCcch
Confidence            6789999999999999999999999987   8899998544

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=98.64  E-value=5e-08  Score=63.84  Aligned_cols=39  Identities=21%  Similarity=0.198  Sum_probs=34.9

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ..+++|+++||||+|+||+++++.|+++|+   .|++++|+.
T Consensus        17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   55 (267)
T 1vl8_A           17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGC---SVVVASRNL   55 (267)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            347789999999999999999999999988   888888864

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=98.64  E-value=7.9e-08  Score=61.86  Aligned_cols=37  Identities=24%  Similarity=0.324  Sum_probs=33.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||++++++|+++|+   .|++++|+.
T Consensus        11 l~~k~vlItGasggiG~~la~~l~~~G~---~V~~~~r~~   47 (260)
T 3awd_A           11 LDNRVAIVTGGAQNIGLACVTALAEAGA---RVIIADLDE   47 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999988   888888864

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.64  E-value=6.2e-08  Score=61.57  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=32.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++||||+|+||++++++|+++|+   .|++++|+..
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~---~V~~~~r~~~   37 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGY---RVVVLDLRRE   37 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC---EEEEEESSCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEccCcc
Confidence            68999999999999999999999988   8888888653

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=98.64  E-value=5e-08  Score=62.35  Aligned_cols=37  Identities=24%  Similarity=0.332  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~---~V~~~~r~~   41 (244)
T 3d3w_A            5 LAGRRVLVTGAGKGIGRGTVQALHATGA---RVVAVSRTQ   41 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999988   788888863

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=98.64  E-value=5.8e-08  Score=62.30  Aligned_cols=37  Identities=19%  Similarity=0.221  Sum_probs=33.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         9 ~~~k~vlITGasggiG~~la~~l~~~G~---~V~~~~r~~   45 (254)
T 2wsb_A            9 LDGACAAVTGAGSGIGLEICRAFAASGA---RLILIDREA   45 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999988   889998864

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=98.63  E-value=6.5e-08  Score=63.47  Aligned_cols=37  Identities=27%  Similarity=0.388  Sum_probs=33.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhC-CCcceEEEEeCCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSC-PGIKNIYLLMRPKHG   65 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g-~~~~~V~~l~r~~~~   65 (82)
                      .++|+||||||++|++++++|+++| +   .|++++|++..
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~---~V~~~~R~~~~   42 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF---KVRVVTRNPRK   42 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS---EEEEEESCTTS
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc---eEEEEEcCCCC
Confidence            4789999999999999999999997 6   89999997653

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=98.63  E-value=6.3e-08  Score=62.73  Aligned_cols=38  Identities=18%  Similarity=0.224  Sum_probs=34.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+..
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~   42 (257)
T 3tpc_A            5 LKSRVFIVTGASSGLGAAVTRMLAQEGA---TVLGLDLKPP   42 (257)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESSCC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCChH
Confidence            6789999999999999999999999998   7888888754

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=98.63  E-value=4.6e-08  Score=63.41  Aligned_cols=37  Identities=19%  Similarity=0.333  Sum_probs=34.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus        12 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   48 (260)
T 2zat_A           12 LENKVALVTASTDGIGLAIARRLAQDGA---HVVVSSRKQ   48 (260)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999988   888888864

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=98.63  E-value=4.7e-08  Score=64.89  Aligned_cols=33  Identities=24%  Similarity=0.453  Sum_probs=30.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      |+|+||||+||||++++++|+++|+   .|++++|.
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~r~   34 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGI---DLIVFDNL   34 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCC---EEEEEeCC
Confidence            5799999999999999999999987   89999874

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.63  E-value=6.7e-08  Score=62.66  Aligned_cols=38  Identities=21%  Similarity=0.365  Sum_probs=34.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+..
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   41 (256)
T 2d1y_A            4 FAGKGVLVTGGARGIGRAIAQAFAREGA---LVALCDLRPE   41 (256)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSTT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCChh
Confidence            5689999999999999999999999988   8888888754

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=98.63  E-value=9.2e-08  Score=59.56  Aligned_cols=47  Identities=13%  Similarity=0.221  Sum_probs=35.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC----CccHHHHHHHHHh
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH----GQDINGRLAEIIN   77 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~----~~~~~~~~~~~~~   77 (82)
                      |+++||||+|+||++++++|+ +|+   +|++++|+..    +....+.++++++
T Consensus         4 M~vlVtGasg~iG~~~~~~l~-~g~---~V~~~~r~~~~~~~D~~~~~~~~~~~~   54 (202)
T 3d7l_A            4 MKILLIGASGTLGSAVKERLE-KKA---EVITAGRHSGDVTVDITNIDSIKKMYE   54 (202)
T ss_dssp             CEEEEETTTSHHHHHHHHHHT-TTS---EEEEEESSSSSEECCTTCHHHHHHHHH
T ss_pred             cEEEEEcCCcHHHHHHHHHHH-CCC---eEEEEecCccceeeecCCHHHHHHHHH
Confidence            379999999999999999999 887   8899998742    2333444544443

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=98.62  E-value=6.7e-08  Score=62.44  Aligned_cols=37  Identities=16%  Similarity=0.321  Sum_probs=34.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|++
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   41 (249)
T 2ew8_A            5 LKDKLAVITGGANGIGRAIAERFAVEGA---DIAIADLVP   41 (249)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEcCCc
Confidence            6789999999999999999999999988   888888875

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=98.62  E-value=6e-08  Score=62.96  Aligned_cols=37  Identities=19%  Similarity=0.374  Sum_probs=33.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||++++++|+++|+   .|++++|+.
T Consensus        14 l~~k~vlITGasggiG~~~a~~l~~~G~---~V~~~~r~~   50 (278)
T 2bgk_A           14 LQDKVAIITGGAGGIGETTAKLFVRYGA---KVVIADIAD   50 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCCh
Confidence            6789999999999999999999999988   788888853

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=98.62  E-value=8.3e-08  Score=62.69  Aligned_cols=37  Identities=19%  Similarity=0.340  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||+++++.|+++|+   .|++++|+.
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   42 (264)
T 2dtx_A            6 LRDKVVIVTGASMGIGRAIAERFVDEGS---KVIDLSIHD   42 (264)
T ss_dssp             GTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEecCc
Confidence            6789999999999999999999999988   788888864

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=98.62  E-value=5.8e-08  Score=63.14  Aligned_cols=37  Identities=22%  Similarity=0.294  Sum_probs=33.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   41 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGA---KVALVDWNL   41 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCC---EEEEEECCH
Confidence            5689999999999999999999999988   888888864

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=98.62  E-value=8.1e-08  Score=63.30  Aligned_cols=37  Identities=24%  Similarity=0.472  Sum_probs=34.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~~~G~---~V~~~~r~~   50 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELARRGA---TVIMAVRDT   50 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEECCH
Confidence            6789999999999999999999999988   888888864

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=98.62  E-value=1.8e-08  Score=70.94  Aligned_cols=43  Identities=28%  Similarity=0.437  Sum_probs=35.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCccHHHH
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGR   71 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~~~~~   71 (82)
                      .++|+|||||||||++++++|++.|+   .|++++|+........+
T Consensus       150 ~~~VLVTGatG~iG~~l~~~L~~~g~---~V~~l~R~~~~~~~~~~  192 (508)
T 4f6l_B          150 LGNTLLTGATGFLGAYLIEALQGYSH---RIYCFIRADNEEIAWYK  192 (508)
T ss_dssp             CEEEEESCTTSHHHHHHHHHTBTTEE---EEEEEEESSSHHHHHHH
T ss_pred             CCeEEEECCccchHHHHHHHHHhcCC---EEEEEECCCChHHHHHH
Confidence            47899999999999999999988876   89999998764333333

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=98.62  E-value=7.1e-08  Score=62.33  Aligned_cols=37  Identities=16%  Similarity=0.270  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~---~V~~~~r~~   41 (247)
T 2jah_A            5 LQGKVALITGASSGIGEATARALAAEGA---AVAIAARRV   41 (247)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            6789999999999999999999999988   888888864

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=98.62  E-value=7.1e-08  Score=63.38  Aligned_cols=37  Identities=32%  Similarity=0.636  Sum_probs=32.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      .++|+||||||++|++++++|+++|+   .|++++|+...
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~~~   40 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH---PTYVLFRPEVV   40 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCSCCS
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC---cEEEEECCCcc
Confidence            36799999999999999999999987   89999997543

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=98.62  E-value=6.1e-08  Score=64.48  Aligned_cols=37  Identities=22%  Similarity=0.340  Sum_probs=34.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~---~V~~~~r~~   65 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA---RLVLSDVDQ   65 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            6789999999999999999999999988   888888864

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=98.62  E-value=4.8e-08  Score=62.64  Aligned_cols=37  Identities=11%  Similarity=0.170  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         9 ~~~~~vlVtGasggiG~~la~~l~~~G~---~V~~~~r~~   45 (255)
T 1fmc_A            9 LDGKCAIITGAGAGIGKEIAITFATAGA---SVVVSDINA   45 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            6789999999999999999999999987   888888864

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=98.61  E-value=1e-07  Score=60.65  Aligned_cols=41  Identities=34%  Similarity=0.558  Sum_probs=34.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +++|+|+||||+|+||++++++|+++|+ ...|++++|++..
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~-~~~V~~~~r~~~~   56 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGL-FSKVTLIGRRKLT   56 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTC-CSEEEEEESSCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCC-CCEEEEEEcCCCC
Confidence            5688999999999999999999999975 1257888887543

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=98.61  E-value=4.7e-08  Score=62.46  Aligned_cols=37  Identities=24%  Similarity=0.350  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         5 ~~~~~vlVtGasggiG~~la~~l~~~G~---~V~~~~r~~   41 (248)
T 2pnf_A            5 LQGKVSLVTGSTRGIGRAIAEKLASAGS---TVIITGTSG   41 (248)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCh
Confidence            5689999999999999999999999988   888888864

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=98.61  E-value=1.3e-07  Score=62.32  Aligned_cols=38  Identities=16%  Similarity=0.469  Sum_probs=34.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+++||||+|+||.+++++|+++|+   .|++++|+..
T Consensus         7 l~~k~vlVTGas~GIG~aia~~l~~~G~---~V~~~~r~~~   44 (285)
T 3sc4_A            7 LRGKTMFISGGSRGIGLAIAKRVAADGA---NVALVAKSAE   44 (285)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHTTTC---EEEEEESCCS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECChh
Confidence            6789999999999999999999999988   8999999765

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=98.61  E-value=5.5e-08  Score=63.59  Aligned_cols=38  Identities=16%  Similarity=0.215  Sum_probs=33.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+..
T Consensus         3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~~   40 (281)
T 3m1a_A            3 ESAKVWLVTGASSGFGRAIAEAAVAAGD---TVIGTARRTE   40 (281)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSGG
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            4578999999999999999999999988   8888888653

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=98.61  E-value=5.7e-08  Score=63.72  Aligned_cols=38  Identities=24%  Similarity=0.261  Sum_probs=32.7

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|+++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~---~V~~~~r~~   46 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGI---MVVLTCRDV   46 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            36789999999999999999999999988   899998864

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=98.61  E-value=4e-08  Score=64.13  Aligned_cols=35  Identities=17%  Similarity=0.378  Sum_probs=30.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRS-CPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~-g~~~~~V~~l~r~~~   64 (82)
                      |+|+|||||||||++++++|++. |+   .|++++|++.
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~---~V~~~~R~~~   36 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHID---HFHIGVRNVE   36 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCT---TEEEEESSGG
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCC---cEEEEECCHH
Confidence            46999999999999999999887 67   8999999754

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=98.61  E-value=1e-07  Score=62.59  Aligned_cols=38  Identities=16%  Similarity=0.179  Sum_probs=34.3

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|+++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus        26 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   63 (283)
T 1g0o_A           26 SLEGKVALVTGAGRGIGREMAMELGRRGC---KVIVNYANS   63 (283)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            46789999999999999999999999988   788888864

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=98.61  E-value=6.3e-08  Score=63.78  Aligned_cols=33  Identities=39%  Similarity=0.604  Sum_probs=30.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      |+|+||||+||||++++++|+++|+   .|++++|.
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~---~V~~~~r~   33 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGL---EVAVLDNL   33 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC---EEEEECCC
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC---EEEEEECC
Confidence            4799999999999999999999988   88888874

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=98.61  E-value=8.5e-08  Score=62.07  Aligned_cols=38  Identities=26%  Similarity=0.274  Sum_probs=34.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+++||||+|+||.+++++|+++|+   .|++++|+..
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~~   39 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGA---NIVLNGFGDP   39 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEECSSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCch
Confidence            4679999999999999999999999988   7888888654

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=98.60  E-value=7.8e-08  Score=62.60  Aligned_cols=37  Identities=22%  Similarity=0.405  Sum_probs=33.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus        11 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   47 (267)
T 1iy8_A           11 FTDRVVLITGGGSGLGRATAVRLAAEGA---KLSLVDVSS   47 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999988   888888864

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=98.60  E-value=3.8e-08  Score=63.00  Aligned_cols=36  Identities=17%  Similarity=0.303  Sum_probs=32.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhC-CCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSC-PGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g-~~~~~V~~l~r~~~   64 (82)
                      .|+|+||||+|+||++++++|+++| +   .|++++|++.
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~---~V~~~~R~~~   59 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTI---KQTLFARQPA   59 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTE---EEEEEESSGG
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCc---eEEEEEcChh
Confidence            4789999999999999999999998 6   8899998753

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=98.60  E-value=1.2e-07  Score=62.27  Aligned_cols=39  Identities=26%  Similarity=0.412  Sum_probs=35.2

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ..+++++++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus        24 ~~~~~k~vlITGasggIG~~la~~l~~~G~---~V~~~~r~~   62 (286)
T 1xu9_A           24 EMLQGKKVIVTGASKGIGREMAYHLAKMGA---HVVVTARSK   62 (286)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             hhcCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            447899999999999999999999999988   889988864

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=98.60  E-value=8.5e-08  Score=62.58  Aligned_cols=38  Identities=21%  Similarity=0.198  Sum_probs=34.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+..
T Consensus        26 ~~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~   63 (260)
T 3un1_A           26 NQQKVVVITGASQGIGAGLVRAYRDRNY---RVVATSRSIK   63 (260)
T ss_dssp             TTCCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESSCC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCChh
Confidence            6789999999999999999999999998   8888888643

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=98.60  E-value=7.5e-08  Score=62.71  Aligned_cols=37  Identities=16%  Similarity=0.213  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   41 (260)
T 1nff_A            5 LTGKVALVSGGARGMGASHVRAMVAEGA---KVVFGDILD   41 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999988   888888864

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=98.60  E-value=7.1e-08  Score=62.61  Aligned_cols=37  Identities=19%  Similarity=0.340  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   41 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKEGA---HIVLVARQV   41 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            5689999999999999999999999988   888888864

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=98.60  E-value=7.9e-08  Score=64.86  Aligned_cols=35  Identities=29%  Similarity=0.302  Sum_probs=31.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|+||||+||||++++++|+++|+   .|++++|...
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   59 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY---EVHGIVRRSS   59 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCS
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC---EEEEEECCcc
Confidence            5899999999999999999999987   8999998643

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=98.60  E-value=6.5e-08  Score=62.62  Aligned_cols=37  Identities=30%  Similarity=0.391  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||+++++.|+++|+   .|++++|+.
T Consensus        12 l~~k~vlITGasggiG~~la~~l~~~G~---~V~~~~r~~   48 (266)
T 1xq1_A           12 LKAKTVLVTGGTKGIGHAIVEEFAGFGA---VIHTCARNE   48 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999988   888888864

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=98.60  E-value=8.8e-08  Score=63.13  Aligned_cols=38  Identities=32%  Similarity=0.473  Sum_probs=34.5

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++++++||||+|+||++++++|+++|+   .|++++|+.
T Consensus        15 ~l~~k~vlVTGasggIG~~la~~l~~~G~---~V~~~~r~~   52 (303)
T 1yxm_A           15 LLQGQVAIVTGGATGIGKAIVKELLELGS---NVVIASRKL   52 (303)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            47789999999999999999999999988   888888863

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=98.59  E-value=5.8e-08  Score=63.67  Aligned_cols=36  Identities=22%  Similarity=0.497  Sum_probs=32.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++|+||||||++|+++++.|+++|+   .|++++|+..
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~l~R~~~   39 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH---PTFLLVREST   39 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC---CEEEEECCcc
Confidence            36799999999999999999999987   7899999754

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.59  E-value=6.3e-08  Score=61.62  Aligned_cols=37  Identities=30%  Similarity=0.316  Sum_probs=33.0

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhC--CCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSC--PGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g--~~~~~V~~l~r~~~   64 (82)
                      ++++++||||+|+||++++++|+++|  +   .|++++|+..
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~---~V~~~~r~~~   40 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIR---HIIATARDVE   40 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCC---EEEEEESSGG
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCc---EEEEEecCHH
Confidence            46899999999999999999999998  6   8888888643

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=98.59  E-value=8.7e-08  Score=61.91  Aligned_cols=38  Identities=26%  Similarity=0.413  Sum_probs=34.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+..
T Consensus        13 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   50 (247)
T 1uzm_A           13 FVSRSVLVTGGNRGIGLAIAQRLAADGH---KVAVTHRGSG   50 (247)
T ss_dssp             CCCCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCChH
Confidence            6789999999999999999999999988   8888888653

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=98.59  E-value=1.3e-07  Score=60.99  Aligned_cols=39  Identities=21%  Similarity=0.278  Sum_probs=33.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+++||||+|+||.+++++|+++|+.  .|++++|+..
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~--~v~~~~r~~~   41 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLK--NFVILDRVEN   41 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCS--EEEEEESSCC
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCc--EEEEEecCch
Confidence            56899999999999999999999999872  2788888653

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=98.59  E-value=1.1e-07  Score=61.47  Aligned_cols=37  Identities=14%  Similarity=0.212  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         5 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~   41 (250)
T 2fwm_X            5 FSGKNVWVTGAGKGIGYATALAFVEAGA---KVTGFDQAF   41 (250)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCch
Confidence            5689999999999999999999999988   888888864

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=98.59  E-value=9.2e-08  Score=62.06  Aligned_cols=37  Identities=19%  Similarity=0.272  Sum_probs=33.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   46 (263)
T 3ak4_A           10 LSGRKAIVTGGSKGIGAAIARALDKAGA---TVAIADLDV   46 (263)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999988   888888863

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=98.59  E-value=1e-07  Score=62.72  Aligned_cols=37  Identities=24%  Similarity=0.504  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus        27 l~~k~vlVTGas~gIG~aia~~L~~~G~---~V~~~~r~~   63 (276)
T 2b4q_A           27 LAGRIALVTGGSRGIGQMIAQGLLEAGA---RVFICARDA   63 (276)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999988   788888864

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=98.59  E-value=9.4e-08  Score=62.32  Aligned_cols=39  Identities=15%  Similarity=0.283  Sum_probs=35.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+...
T Consensus        32 l~~k~vlITGasggIG~~la~~L~~~G~---~V~~~~r~~~~   70 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQAGA---DVAIWYNSHPA   70 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHHTC---EEEEEESSSCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            6789999999999999999999999988   88888887543

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=98.59  E-value=7.8e-08  Score=62.76  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=31.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+||| +||||++++++|+++|+   .|++++|+..
T Consensus         3 ~~~ilVtG-aG~iG~~l~~~L~~~g~---~V~~~~r~~~   37 (286)
T 3gpi_A            3 LSKILIAG-CGDLGLELARRLTAQGH---EVTGLRRSAQ   37 (286)
T ss_dssp             CCCEEEEC-CSHHHHHHHHHHHHTTC---CEEEEECTTS
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHCCC---EEEEEeCCcc
Confidence            57899999 59999999999999988   8999999754

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=98.59  E-value=9.5e-08  Score=62.91  Aligned_cols=38  Identities=13%  Similarity=0.235  Sum_probs=34.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+..
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~   67 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGA---QVAVAARHSD   67 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESSGG
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            6799999999999999999999999988   8888898654

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=98.59  E-value=8.4e-08  Score=63.86  Aligned_cols=34  Identities=26%  Similarity=0.544  Sum_probs=30.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHh--CCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRS--CPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~--g~~~~~V~~l~r~~   63 (82)
                      |+|+||||+||||++++++|+++  |+   .|++++|..
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~---~V~~~~r~~   40 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDV---HVTVLDKLT   40 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTC---EEEEEECCC
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCC---EEEEEeCCC
Confidence            68999999999999999999999  66   889998854

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=98.59  E-value=9.8e-08  Score=61.93  Aligned_cols=37  Identities=27%  Similarity=0.400  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         7 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~   43 (260)
T 2ae2_A            7 LEGCTALVTGGSRGIGYGIVEELASLGA---SVYTCSRNQ   43 (260)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999988   788888864

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=98.58  E-value=9.2e-08  Score=62.76  Aligned_cols=37  Identities=27%  Similarity=0.477  Sum_probs=33.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~   45 (281)
T 3svt_A            9 FQDRTYLVTGGGSGIGKGVAAGLVAAGA---SVMIVGRNP   45 (281)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999988   788888864

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=98.58  E-value=1.1e-07  Score=62.10  Aligned_cols=38  Identities=16%  Similarity=0.337  Sum_probs=33.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+++||||+|+||.+++++|+++|.   .|+++.|...
T Consensus         9 l~~k~vlVTGas~GIG~aia~~la~~G~---~V~~~~r~~~   46 (262)
T 3ksu_A            9 LKNKVIVIAGGIKNLGALTAKTFALESV---NLVLHYHQAK   46 (262)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHTTSSC---EEEEEESCGG
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEecCcc
Confidence            6789999999999999999999999988   7888877543

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=98.58  E-value=6.3e-08  Score=64.02  Aligned_cols=35  Identities=29%  Similarity=0.604  Sum_probs=32.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++|+||||||++|++++++|+++|+   .|++++|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~   38 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSH---PTFIYARPL   38 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC---CEEEEECCC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCC---cEEEEECCc
Confidence            46799999999999999999999987   899999976

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=98.58  E-value=3.2e-08  Score=64.37  Aligned_cols=35  Identities=31%  Similarity=0.553  Sum_probs=31.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHh--CCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRS--CPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~--g~~~~~V~~l~r~~~   64 (82)
                      |+|+||||+||||++++++|+++  |+   .|++++|++.
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~---~V~~~~r~~~   37 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS---QIIAIVRNVE   37 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG---GEEEEESCTT
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC---eEEEEEcCHH
Confidence            47999999999999999999998  76   8999999754

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=98.58  E-value=6.9e-08  Score=62.06  Aligned_cols=38  Identities=11%  Similarity=0.200  Sum_probs=34.4

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++++|+||||+|+||+++++.|+++|+   .|++++|+.
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~   48 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGS---KVIISGSNE   48 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            46789999999999999999999999988   888888854

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=98.58  E-value=1.1e-07  Score=62.20  Aligned_cols=37  Identities=22%  Similarity=0.376  Sum_probs=34.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||+++++.|+++|+   .|++++|+.
T Consensus        30 l~~k~vlVTGasggIG~~la~~l~~~G~---~V~~~~r~~   66 (279)
T 1xg5_A           30 WRDRLALVTGASGGIGAAVARALVQQGL---KVVGCARTV   66 (279)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEECCh
Confidence            6789999999999999999999999988   888888864

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=98.58  E-value=1.1e-07  Score=61.76  Aligned_cols=37  Identities=16%  Similarity=0.300  Sum_probs=33.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   42 (259)
T 4e6p_A            6 LEGKSALITGSARGIGRAFAEAYVREGA---TVAIADIDI   42 (259)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999998   788888853

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=98.57  E-value=1.4e-07  Score=61.46  Aligned_cols=38  Identities=24%  Similarity=0.350  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+..
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~   56 (253)
T 2nm0_A           19 HMSRSVLVTGGNRGIGLAIARAFADAGD---KVAITYRSGE   56 (253)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCChH
Confidence            6789999999999999999999999988   8888888653

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=98.57  E-value=6.5e-08  Score=61.50  Aligned_cols=51  Identities=16%  Similarity=0.135  Sum_probs=39.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC-CccHHHHHHHHHh
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH-GQDINGRLAEIIN   77 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~-~~~~~~~~~~~~~   77 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.. +....+.++++++
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~~~D~~~~~~v~~~~~   55 (223)
T 3uce_A            4 SDKTVYVVLGGTSGIGAELAKQLESEHT---IVHVASRQTGLDISDEKSVYHYFE   55 (223)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHCSTTE---EEEEESGGGTCCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEecCCcccCCCCHHHHHHHHH
Confidence            5689999999999999999999999987   8888888643 3344455555543

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=98.57  E-value=1.7e-07  Score=63.91  Aligned_cols=40  Identities=23%  Similarity=0.334  Sum_probs=35.9

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ..+++|+++||||+|+||.+++++|+++|.   .|++++|+..
T Consensus        41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga---~Vvl~~r~~~   80 (346)
T 3kvo_A           41 GRLAGCTVFITGASRGIGKAIALKAAKDGA---NIVIAAKTAQ   80 (346)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESCCS
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHHHCCC---EEEEEECChh
Confidence            347899999999999999999999999988   8888888755

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=98.57  E-value=1e-07  Score=61.86  Aligned_cols=37  Identities=11%  Similarity=0.165  Sum_probs=33.4

Q ss_pred             ccCcEEEEEcCCCh--HHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGF--MGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~--iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+  ||.+++++|+++|+   .|++++|+.
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~---~V~~~~r~~   43 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA---RLIFTYAGE   43 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTC---EEEEEESSG
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC---EEEEecCch
Confidence            67899999999988  99999999999988   788888864

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=98.57  E-value=8.5e-08  Score=61.42  Aligned_cols=37  Identities=19%  Similarity=0.335  Sum_probs=33.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         4 ~~~k~vlVtGasggiG~~~a~~l~~~G~---~V~~~~r~~   40 (251)
T 1zk4_A            4 LDGKVAIITGGTLGIGLAIATKFVEEGA---KVMITGRHS   40 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5689999999999999999999999988   788888864

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=98.57  E-value=2.2e-07  Score=60.87  Aligned_cols=37  Identities=22%  Similarity=0.388  Sum_probs=34.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||.+++++|+++|+   .|++++|++
T Consensus         8 l~~k~~lVTGas~gIG~a~a~~l~~~G~---~V~~~~r~~   44 (281)
T 3s55_A            8 FEGKTALITGGARGMGRSHAVALAEAGA---DIAICDRCE   44 (281)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCS
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCc
Confidence            6789999999999999999999999998   888888863

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=98.57  E-value=9.4e-08  Score=62.16  Aligned_cols=37  Identities=22%  Similarity=0.246  Sum_probs=33.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~---~V~~~~r~~   63 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGA---RVVLTARDV   63 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEECCH
Confidence            6789999999999999999999999988   788888864

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=98.57  E-value=9.7e-08  Score=64.78  Aligned_cols=37  Identities=19%  Similarity=0.294  Sum_probs=33.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +++|+|||||||||++++++|+++|+   .|++++|+...
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~~~   41 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH---HVRAQVHSLKG   41 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC---CEEEEESCSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEECCCCh
Confidence            57899999999999999999999987   78999997653

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=98.57  E-value=1e-07  Score=62.32  Aligned_cols=37  Identities=16%  Similarity=0.190  Sum_probs=33.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||+++++.|+++|+   .|++++|+.
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~---~V~~~~r~~   65 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKS---KLVLWDINK   65 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEEcCH
Confidence            6789999999999999999999999988   788888864

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=98.56  E-value=1.2e-07  Score=63.01  Aligned_cols=33  Identities=30%  Similarity=0.556  Sum_probs=29.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      |+|+||||+||||++++++|+++|+   .|++++|.
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~---~V~~~~~~   33 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGH---DVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC---EEEEEecC
Confidence            4799999999999999999999988   78888764

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=98.56  E-value=8.6e-08  Score=63.77  Aligned_cols=38  Identities=32%  Similarity=0.455  Sum_probs=34.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+++||||+|+||.+++++|+++|+   .|++++|+..
T Consensus        39 l~~k~vlVTGas~GIG~aia~~la~~G~---~V~~~~r~~~   76 (293)
T 3rih_A           39 LSARSVLVTGGTKGIGRGIATVFARAGA---NVAVAARSPR   76 (293)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSGG
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            6789999999999999999999999988   8888888754

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=98.56  E-value=2.4e-07  Score=60.86  Aligned_cols=37  Identities=19%  Similarity=0.188  Sum_probs=33.9

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+++|+++||||+|+||.++++.|+++|+   .|++++|+
T Consensus         8 ~l~~k~~lVTGas~gIG~aia~~la~~G~---~V~~~~~~   44 (286)
T 3uve_A            8 RVEGKVAFVTGAARGQGRSHAVRLAQEGA---DIIAVDIC   44 (286)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEecc
Confidence            37889999999999999999999999998   88888876

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=98.56  E-value=1.1e-07  Score=63.89  Aligned_cols=38  Identities=29%  Similarity=0.421  Sum_probs=34.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++|+||||+|+||.+++++|+++|+   .|++++|+..
T Consensus         6 l~~k~vlVTGas~gIG~~la~~l~~~G~---~Vv~~~r~~~   43 (319)
T 3ioy_A            6 FAGRTAFVTGGANGVGIGLVRQLLNQGC---KVAIADIRQD   43 (319)
T ss_dssp             CTTCEEEEETTTSTHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            5789999999999999999999999988   8888888643

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=98.56  E-value=1.3e-07  Score=60.95  Aligned_cols=37  Identities=24%  Similarity=0.351  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus         7 ~~~k~vlITGas~giG~~~a~~l~~~G~---~V~~~~r~~   43 (253)
T 3qiv_A            7 FENKVGIVTGSGGGIGQAYAEALAREGA---AVVVADINA   43 (253)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            6789999999999999999999999988   788888864

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=98.56  E-value=1e-07  Score=61.50  Aligned_cols=35  Identities=17%  Similarity=0.325  Sum_probs=32.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +++++++||||+|+||++++++|+++|+   .|++++|
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~---~V~~~~r   39 (261)
T 1gee_A            5 LEGKVVVITGSSTGLGKSMAIRFATEKA---KVVVNYR   39 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEES
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEcC
Confidence            6789999999999999999999999988   7888888

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=98.56  E-value=1.4e-07  Score=61.75  Aligned_cols=38  Identities=21%  Similarity=0.350  Sum_probs=34.4

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|+++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus        27 ~l~~k~vlVTGas~GIG~aia~~l~~~G~---~Vi~~~r~~   64 (281)
T 3ppi_A           27 QFEGASAIVSGGAGGLGEATVRRLHADGL---GVVIADLAA   64 (281)
T ss_dssp             GGTTEEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCh
Confidence            37899999999999999999999999988   788888864

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=98.56  E-value=1.1e-07  Score=69.27  Aligned_cols=38  Identities=24%  Similarity=0.398  Sum_probs=32.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++|+||||+||||++++++|+++|+   .|++++|...
T Consensus         9 ~~~~~ilVTGatG~IG~~l~~~L~~~G~---~V~~~~r~~~   46 (699)
T 1z45_A            9 STSKIVLVTGGAGYIGSHTVVELIENGY---DCVVADNLSN   46 (699)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSS
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEECCCc
Confidence            5678999999999999999999999987   8999988654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=98.56  E-value=1.3e-07  Score=62.15  Aligned_cols=39  Identities=21%  Similarity=0.273  Sum_probs=35.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +++|+++||||+|+||.++++.|+++|+   .|++++|+...
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~   69 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGAAIAEGLAGAGA---HVILHGVKPGS   69 (275)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSTTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCCHHH
Confidence            7899999999999999999999999988   88888986554

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=98.56  E-value=1.3e-07  Score=61.52  Aligned_cols=37  Identities=24%  Similarity=0.355  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   41 (262)
T 1zem_A            5 FNGKVCLVTGAGGNIGLATALRLAEEGT---AIALLDMNR   41 (262)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999988   788888864

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=98.56  E-value=1.3e-07  Score=61.34  Aligned_cols=37  Identities=24%  Similarity=0.329  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   41 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELARNGA---RLLLFSRNR   41 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5689999999999999999999999988   888888864

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=98.55  E-value=2.2e-07  Score=60.51  Aligned_cols=54  Identities=15%  Similarity=0.285  Sum_probs=35.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCC-cceEEEEeCCCCCccHHHHHHHHHh
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPG-IKNIYLLMRPKHGQDINGRLAEIIN   77 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~-~~~V~~l~r~~~~~~~~~~~~~~~~   77 (82)
                      +++|+|+||||+||||++++++|+++|+. ......+....-+....+.+.++++
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~~~~~~~D~~d~~~~~~~~~   58 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFVSSKDADLTDTAQTRALFE   58 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEECCTTTCCTTSHHHHHHHHH
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCCcccccccccCceecccCCHHHHHHHHh
Confidence            56789999999999999999999999751 1122233222233334455555544

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=98.55  E-value=9e-08  Score=63.28  Aligned_cols=35  Identities=29%  Similarity=0.660  Sum_probs=32.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|+||||||++|+++++.|+++|+   .|++++|+..
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~---~V~~l~R~~~   46 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH---PTYVFTRPNS   46 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC---CEEEEECTTC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC---cEEEEECCCC
Confidence            5799999999999999999999987   7899999764

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=98.55  E-value=1.2e-07  Score=63.00  Aligned_cols=34  Identities=32%  Similarity=0.562  Sum_probs=29.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHh---C---CCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRS---C---PGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~---g---~~~~~V~~l~r~~   63 (82)
                      |+|+||||+||||++++++|+++   |   +   .|++++|..
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~---~V~~~~r~~   40 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPAD---EVIVLDSLT   40 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCS---EEEEEECCC
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCce---EEEEEECCC
Confidence            47999999999999999999996   5   5   889998854

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=98.55  E-value=2.7e-07  Score=60.48  Aligned_cols=36  Identities=22%  Similarity=0.208  Sum_probs=33.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|+++||||+|+||.+++++|+++|+   .|++++|.
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~---~V~~~~r~   48 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGA---DIIACDIC   48 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEecc
Confidence            7889999999999999999999999998   88888874

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=98.55  E-value=2.6e-07  Score=60.51  Aligned_cols=37  Identities=16%  Similarity=0.223  Sum_probs=33.6

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+++|+++||||+|+||.++++.|+++|+   .|++++|.
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~---~V~~~~r~   44 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGA---DIIAVDIA   44 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCC---EEEEEecc
Confidence            37789999999999999999999999998   78888874

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=98.55  E-value=2.1e-07  Score=61.55  Aligned_cols=38  Identities=18%  Similarity=0.339  Sum_probs=34.3

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus        44 ~l~gk~vlVTGas~GIG~aia~~la~~G~---~V~~~~r~~   81 (291)
T 3ijr_A           44 KLKGKNVLITGGDSGIGRAVSIAFAKEGA---NIAIAYLDE   81 (291)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            36889999999999999999999999988   788888864

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=98.55  E-value=1.1e-07  Score=62.30  Aligned_cols=38  Identities=21%  Similarity=0.358  Sum_probs=34.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+..
T Consensus        26 l~gk~vlVTGas~gIG~aia~~la~~G~---~V~~~~r~~~   63 (266)
T 3uxy_A           26 FEGKVALVTGAAGGIGGAVVTALRAAGA---RVAVADRAVA   63 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEECSSCCT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            6789999999999999999999999998   8888888643

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=98.54  E-value=1.2e-07  Score=61.05  Aligned_cols=37  Identities=8%  Similarity=0.117  Sum_probs=33.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   40 (246)
T 2ag5_A            4 LDGKVIILTAAAQGIGQAAALAFAREGA---KVIATDINE   40 (246)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            5689999999999999999999999988   888888863

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=98.54  E-value=1.3e-07  Score=60.45  Aligned_cols=37  Identities=27%  Similarity=0.294  Sum_probs=32.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE-eCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL-MRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l-~r~~   63 (82)
                      +++++++||||+|+||++++++|+++|+   .|+++ .|++
T Consensus         3 l~~~~vlItGasggiG~~~a~~l~~~G~---~V~~~~~r~~   40 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKLGNMGA---NIVLNGSPAS   40 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEECTTC
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCcCH
Confidence            5678999999999999999999999987   78887 4543

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=98.54  E-value=1.5e-07  Score=60.94  Aligned_cols=37  Identities=16%  Similarity=0.254  Sum_probs=33.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   39 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGA---RVVLADVLD   39 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5689999999999999999999999988   788888863

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=98.54  E-value=2.3e-07  Score=61.22  Aligned_cols=40  Identities=23%  Similarity=0.300  Sum_probs=36.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCc
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQ   66 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~   66 (82)
                      ++||.++||||++.||.++++.|+++|.   .|++.+|+.+..
T Consensus         5 L~gKvalVTGas~GIG~aia~~la~~Ga---~Vv~~~r~~~~~   44 (258)
T 4gkb_A            5 LQDKVVIVTGGASGIGGAISMRLAEERA---IPVVFARHAPDG   44 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCCCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEECCcccH
Confidence            7899999999999999999999999998   888889876653

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=98.54  E-value=1.1e-07  Score=61.58  Aligned_cols=35  Identities=14%  Similarity=0.184  Sum_probs=32.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +++++++||||+|+||++++++|+++|+   .|++++|
T Consensus        19 ~~~k~vlItGasggiG~~la~~l~~~G~---~v~~~~r   53 (274)
T 1ja9_A           19 LAGKVALTTGAGRGIGRGIAIELGRRGA---SVVVNYG   53 (274)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEES
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcC
Confidence            6789999999999999999999999987   7888888

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=98.54  E-value=1.4e-07  Score=61.49  Aligned_cols=38  Identities=16%  Similarity=0.302  Sum_probs=34.5

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~   45 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGA---DLVLAARTV   45 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcC---EEEEEeCCH
Confidence            47899999999999999999999999998   788888864

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=98.54  E-value=1.1e-07  Score=61.71  Aligned_cols=38  Identities=24%  Similarity=0.423  Sum_probs=34.2

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|+++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~   40 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGA---RVVITGRTK   40 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            36789999999999999999999999988   788888864

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=98.54  E-value=1.3e-07  Score=63.18  Aligned_cols=34  Identities=21%  Similarity=0.568  Sum_probs=30.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRS-CPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~-g~~~~~V~~l~r~~   63 (82)
                      |+|+||||+||||++++++|++. |+   .|++++|..
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~---~V~~~~r~~   35 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQD---TVVNIDKLT   35 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC---EEEEEECCC
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCC---eEEEEecCC
Confidence            46999999999999999999998 56   888888854

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.54  E-value=1.6e-07  Score=60.58  Aligned_cols=37  Identities=14%  Similarity=0.273  Sum_probs=33.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         3 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~   39 (245)
T 1uls_A            3 LKDKAVLITGAAHGIGRATLELFAKEGA---RLVACDIEE   39 (245)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5689999999999999999999999988   888888863

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=98.54  E-value=1.6e-07  Score=60.92  Aligned_cols=38  Identities=24%  Similarity=0.328  Sum_probs=34.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+++||||+|+||.+++++|+++|+   .|++++|+..
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~G~---~V~~~~r~~~   42 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATDGY---RVVLIARSKQ   42 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHHTC---EEEEEESCHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            6789999999999999999999999988   8888888643

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=98.54  E-value=1.6e-07  Score=61.29  Aligned_cols=37  Identities=24%  Similarity=0.416  Sum_probs=33.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~G~---~V~~~~r~~   44 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAEGA---NVLINGRRE   44 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999998   888888864

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=98.53  E-value=1.1e-07  Score=61.85  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=31.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|+|||+ ||||++++++|+++|+   .|++++|++.
T Consensus         6 ~~ilVtGa-G~iG~~l~~~L~~~g~---~V~~~~r~~~   39 (286)
T 3ius_A            6 GTLLSFGH-GYTARVLSRALAPQGW---RIIGTSRNPD   39 (286)
T ss_dssp             CEEEEETC-CHHHHHHHHHHGGGTC---EEEEEESCGG
T ss_pred             CcEEEECC-cHHHHHHHHHHHHCCC---EEEEEEcChh
Confidence            68999998 9999999999999988   8999999754

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=98.53  E-value=1.7e-07  Score=60.01  Aligned_cols=35  Identities=20%  Similarity=0.236  Sum_probs=31.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~---~V~~~~r~~   36 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD---RVAALDLSA   36 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            58899999999999999999999987   788888864

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=98.53  E-value=1.2e-07  Score=61.58  Aligned_cols=38  Identities=21%  Similarity=0.166  Sum_probs=33.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+++||||+|+||+++++.|+++|+   .|++++|+..
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   39 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGA---DIVLNGFGDA   39 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEECCSCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCC---EEEEEeCCcc
Confidence            5689999999999999999999999988   7888888643

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=98.53  E-value=1.1e-07  Score=62.00  Aligned_cols=37  Identities=16%  Similarity=0.396  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|.   .|+++.|..
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~---~V~~~~r~~   63 (271)
T 4iin_A           27 FTGKNVLITGASKGIGAEIAKTLASMGL---KVWINYRSN   63 (271)
T ss_dssp             CSCCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCC
Confidence            6789999999999999999999999988   888888853

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=98.53  E-value=1.5e-07  Score=61.96  Aligned_cols=40  Identities=23%  Similarity=0.280  Sum_probs=31.6

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ..++++|+++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus        19 ~~m~~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~   58 (279)
T 3sju_A           19 SHMSRPQTAFVTGVSSGIGLAVARTLAARGI---AVYGCARDA   58 (279)
T ss_dssp             ------CEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             ccccCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            3346789999999999999999999999988   788888864

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=98.53  E-value=1.7e-07  Score=61.27  Aligned_cols=36  Identities=31%  Similarity=0.334  Sum_probs=33.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|+++||||+|+||.+++++|+++|+   .|++++|+
T Consensus         8 l~gk~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~~~   43 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGRSHAVKLAEEGA---DIILFDIC   43 (287)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC---eEEEEccc
Confidence            6789999999999999999999999998   78888876

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=98.53  E-value=1.4e-07  Score=60.54  Aligned_cols=37  Identities=14%  Similarity=0.167  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~---~v~~~~r~~   39 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGA---TVVGTATSQ   39 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5689999999999999999999999988   888888864

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=98.53  E-value=1.1e-07  Score=61.50  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=33.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         4 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~   40 (253)
T 1hxh_A            4 LQGKVALVTGGASGVGLEVVKLLLGEGA---KVAFSDINE   40 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999988   788888863

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.52  E-value=1.5e-07  Score=58.75  Aligned_cols=39  Identities=21%  Similarity=0.437  Sum_probs=32.9

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++++|+||||+|+||++++++|+++|+ +.+|++++|++.
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~-~~~V~~~~r~~~   42 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPT-LAKVIAPARKAL   42 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTT-CCEEECCBSSCC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCC-CCeEEEEeCCCc
Confidence            457999999999999999999999974 227888888754

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=98.52  E-value=1.6e-07  Score=60.78  Aligned_cols=39  Identities=10%  Similarity=0.141  Sum_probs=34.8

Q ss_pred             hhccCcEEEEEcCC--ChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         22 EFYQNRSVFVTGGT--GFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        22 ~~~~~~~ilItG~t--G~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ..+++|+|+||||+  |+||.+++++|+++|+   .|++++|+.
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~---~V~~~~r~~   50 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGA---ELAFTYVGD   50 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC---EEEEEESSG
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC---CEEEEecch
Confidence            34788999999998  9999999999999988   888888874

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=98.52  E-value=1.8e-07  Score=60.46  Aligned_cols=37  Identities=14%  Similarity=0.356  Sum_probs=34.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||.+++++|+++|.   .|++++|+.
T Consensus         7 l~~k~vlITGas~gIG~~~a~~l~~~G~---~V~~~~r~~   43 (261)
T 3n74_A            7 LEGKVALITGAGSGFGEGMAKRFAKGGA---KVVIVDRDK   43 (261)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            6789999999999999999999999988   888888864

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=98.52  E-value=1.5e-07  Score=59.83  Aligned_cols=36  Identities=19%  Similarity=0.261  Sum_probs=32.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++++++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~---~V~~~~r~~   39 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGY---RVGLMARDE   39 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            467899999999999999999999988   888888863

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=98.52  E-value=1.9e-07  Score=59.91  Aligned_cols=36  Identities=25%  Similarity=0.419  Sum_probs=32.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +|+++||||+|+||++++++|+++|+   .|++++|+..
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~---~V~~~~r~~~   37 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGY---RVAIASRNPE   37 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            58999999999999999999999988   8888888643

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.52  E-value=1.3e-07  Score=61.67  Aligned_cols=37  Identities=14%  Similarity=0.288  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   40 (278)
T 1spx_A            4 FAEKVAIITGSSNGIGRATAVLFAREGA---KVTITGRHA   40 (278)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5689999999999999999999999988   888888864

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=98.52  E-value=1.1e-07  Score=62.19  Aligned_cols=35  Identities=34%  Similarity=0.609  Sum_probs=30.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhC-CCcceEEEEeCCCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSC-PGIKNIYLLMRPKHG   65 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g-~~~~~V~~l~r~~~~   65 (82)
                      +|+||||+||||++++++|+++| +   .|++++|....
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~---~V~~~~r~~~~   36 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGIT---DILVVDNLKDG   36 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCC---CEEEEECCSSG
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCc---EEEEEccCCCC
Confidence            48999999999999999999998 6   78888886543

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=98.52  E-value=1.7e-07  Score=61.49  Aligned_cols=39  Identities=21%  Similarity=0.388  Sum_probs=35.1

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ..+++|+++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus        23 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~---~V~~~~r~~   61 (277)
T 4fc7_A           23 DLLRDKVAFITGGGSGIGFRIAEIFMRHGC---HTVIASRSL   61 (277)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESCH
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            347899999999999999999999999988   888888864

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=98.52  E-value=1.8e-07  Score=60.13  Aligned_cols=36  Identities=19%  Similarity=0.263  Sum_probs=32.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+|+++||||+|+||++++++|+++|.   .|++++|+.
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~---~V~~~~r~~   37 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGH---QVSMMGRRY   37 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            468999999999999999999999988   888899864

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=98.52  E-value=1.4e-07  Score=62.08  Aligned_cols=37  Identities=16%  Similarity=0.270  Sum_probs=33.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||.++++.|+++|+   .|++++|+.
T Consensus        21 l~~k~~lVTGas~gIG~aia~~L~~~G~---~V~~~~r~~   57 (288)
T 2x9g_A           21 MEAPAAVVTGAAKRIGRAIAVKLHQTGY---RVVIHYHNS   57 (288)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHHTC---EEEEEESSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---eEEEEeCCc
Confidence            6789999999999999999999999988   888888865

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=98.52  E-value=1.4e-07  Score=60.66  Aligned_cols=36  Identities=28%  Similarity=0.342  Sum_probs=32.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHH-hCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLR-SCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~-~g~~~~~V~~l~r~~   63 (82)
                      ++++|+||||+|+||++++++|++ .|+   .|++++|+.
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~---~V~~~~r~~   39 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG---DVVLTARDV   39 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS---EEEEEESSH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC---eEEEEeCCh
Confidence            578999999999999999999999 887   888888863

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=98.52  E-value=1.5e-07  Score=62.00  Aligned_cols=37  Identities=22%  Similarity=0.236  Sum_probs=33.4

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+++|+++||||+|+||++++++|+++|+   .|++++|.
T Consensus        22 ~l~~k~~lVTGas~GIG~~ia~~la~~G~---~V~~~~r~   58 (281)
T 3v2h_A           22 SMMTKTAVITGSTSGIGLAIARTLAKAGA---NIVLNGFG   58 (281)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEECCC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCC
Confidence            36789999999999999999999999998   78888874

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=98.52  E-value=1.9e-07  Score=60.65  Aligned_cols=37  Identities=32%  Similarity=0.486  Sum_probs=34.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~G~---~V~~~~r~~   42 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEGGA---EVLLTGRNE   42 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999988   888888864

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=98.51  E-value=1.9e-07  Score=61.25  Aligned_cols=37  Identities=19%  Similarity=0.308  Sum_probs=33.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||+++++.|+++|+   .|++++|+.
T Consensus        20 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   56 (277)
T 2rhc_B           20 QDSEVALVTGATSGIGLEIARRLGKEGL---RVFVCARGE   56 (277)
T ss_dssp             TTSCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999988   888888864

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=98.51  E-value=1.7e-07  Score=61.35  Aligned_cols=37  Identities=19%  Similarity=0.299  Sum_probs=32.4

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+++|+++||||+|+||+++++.|+++|+   .|++++|+
T Consensus        13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~   49 (266)
T 3p19_A           13 GSMKKLVVITGASSGIGEAIARRFSEEGH---PLLLLARR   49 (266)
T ss_dssp             --CCCEEEEESTTSHHHHHHHHHHHHTTC---CEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECC
Confidence            36789999999999999999999999998   78888885

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=98.51  E-value=2.3e-07  Score=60.80  Aligned_cols=38  Identities=16%  Similarity=0.343  Sum_probs=34.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+++||||+|+||.+++++|+++|.   .|++++|+..
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~   41 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAARDGA---NVAIAAKSAV   41 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCCS
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeccch
Confidence            6789999999999999999999999988   8899998754

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=98.51  E-value=1.9e-07  Score=60.41  Aligned_cols=37  Identities=16%  Similarity=0.261  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||.++++.|+++|+   .|++++|+.
T Consensus         4 l~gk~vlVTGas~gIG~a~a~~l~~~G~---~V~~~~r~~   40 (247)
T 3rwb_A            4 LAGKTALVTGAAQGIGKAIAARLAADGA---TVIVSDINA   40 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999998   788888864

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=98.51  E-value=2e-07  Score=60.94  Aligned_cols=37  Identities=27%  Similarity=0.431  Sum_probs=34.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~   55 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGLGA---RVYTCSRNE   55 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999988   888888864

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=98.51  E-value=2.3e-07  Score=59.76  Aligned_cols=33  Identities=18%  Similarity=0.280  Sum_probs=29.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|+||||+||||++++++|++ |+   .|++++|++
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~---~V~~~~r~~   33 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RH---EVIKVYNSS   33 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TS---CEEEEESSS
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CC---eEEEecCCC
Confidence            4699999999999999999995 66   789999875

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.51  E-value=2.1e-07  Score=60.82  Aligned_cols=37  Identities=16%  Similarity=0.374  Sum_probs=33.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~~~G~---~V~~~~r~~   40 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFAREGA---SLVAVDREE   40 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5689999999999999999999999988   888888864

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=98.51  E-value=1.6e-07  Score=61.24  Aligned_cols=37  Identities=35%  Similarity=0.454  Sum_probs=33.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         8 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~   44 (262)
T 3pk0_A            8 LQGRSVVVTGGTKGIGRGIATVFARAGA---NVAVAGRST   44 (262)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999988   888888864

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=98.50  E-value=2.1e-07  Score=60.79  Aligned_cols=37  Identities=16%  Similarity=0.170  Sum_probs=33.9

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+++|+++||||+|+||.+++++|+++|+   .|++++|+
T Consensus        10 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~   46 (278)
T 3sx2_A           10 PLTGKVAFITGAARGQGRAHAVRLAADGA---DIIAVDLC   46 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC---eEEEEecc
Confidence            37889999999999999999999999998   78888876

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=98.50  E-value=2.4e-07  Score=59.06  Aligned_cols=36  Identities=19%  Similarity=0.251  Sum_probs=32.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +|+++||||+|+||++++++|+++|+   .|+.++|+..
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   37 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY---ALALGARSVD   37 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            68999999999999999999999988   7888888643

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=98.50  E-value=1.6e-07  Score=61.61  Aligned_cols=37  Identities=22%  Similarity=0.362  Sum_probs=33.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||.++++.|+++|.   .|++++|+.
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~   38 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGA---KILLGARRQ   38 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            4679999999999999999999999988   788888864

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=98.50  E-value=2.2e-07  Score=60.34  Aligned_cols=37  Identities=19%  Similarity=0.279  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCC--ChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGT--GFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~t--G~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+  |+||++++++|+++|+   .|++++|+.
T Consensus         6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~---~V~~~~r~~   44 (261)
T 2wyu_A            6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA---EVALSYQAE   44 (261)
T ss_dssp             CTTCEEEEESCCSSSSHHHHHHHHHHHHTC---EEEEEESCG
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            678999999999  9999999999999988   888888865

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=98.50  E-value=1.9e-07  Score=60.69  Aligned_cols=37  Identities=11%  Similarity=0.236  Sum_probs=34.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   46 (256)
T 3gaf_A           10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA---SVVVTDLKS   46 (256)
T ss_dssp             CTTCEEEECSCSSHHHHHHHHHHHHHTC---EEEEEESSH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999998   788888864

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=98.50  E-value=1.5e-07  Score=62.16  Aligned_cols=39  Identities=21%  Similarity=0.213  Sum_probs=32.1

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+++|+++||||+|+||.++++.|+++|+   .|++++|+..
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~   68 (281)
T 4dry_A           30 SGEGRIALVTGGGTGVGRGIAQALSAEGY---SVVITGRRPD   68 (281)
T ss_dssp             ----CEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            36789999999999999999999999988   8888888643

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=98.50  E-value=2.3e-07  Score=60.76  Aligned_cols=37  Identities=24%  Similarity=0.407  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||.+++++|+++|+   .|++++|++
T Consensus         7 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   43 (270)
T 1yde_A            7 YAGKVVVVTGGGRGIGAGIVRAFVNSGA---RVVICDKDE   43 (270)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999988   788888864

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=98.50  E-value=2.2e-07  Score=61.18  Aligned_cols=37  Identities=19%  Similarity=0.278  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus        25 l~~k~vlVTGas~GIG~aia~~l~~~G~---~V~~~~r~~   61 (277)
T 4dqx_A           25 LNQRVCIVTGGGSGIGRATAELFAKNGA---YVVVADVNE   61 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999998   788888864

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=98.50  E-value=1.5e-07  Score=68.34  Aligned_cols=38  Identities=32%  Similarity=0.490  Sum_probs=33.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRS-CPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~-g~~~~~V~~l~r~~~   64 (82)
                      +++++|+||||+||||++++++|+++ |+   .|++++|+..
T Consensus       313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~---~V~~~~r~~~  351 (660)
T 1z7e_A          313 RRRTRVLILGVNGFIGNHLTERLLREDHY---EVYGLDIGSD  351 (660)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHSSSE---EEEEEESCCT
T ss_pred             ccCceEEEEcCCcHHHHHHHHHHHhcCCC---EEEEEEcCch
Confidence            56789999999999999999999998 66   8999998654

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=98.49  E-value=2.3e-07  Score=61.84  Aligned_cols=42  Identities=14%  Similarity=0.311  Sum_probs=35.8

Q ss_pred             ChhhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         19 PVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        19 ~~~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .|.+.|+||.++||||++.||.++++.|+++|.   .|++.+|+.
T Consensus        22 ~Ms~rL~gKvalVTGas~GIG~aiA~~la~~Ga---~V~i~~r~~   63 (273)
T 4fgs_A           22 SMTQRLNAKIAVITGATSGIGLAAAKRFVAEGA---RVFITGRRK   63 (273)
T ss_dssp             ---CTTTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             hhcchhCCCEEEEeCcCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            344568999999999999999999999999998   888888864

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=98.49  E-value=4.5e-08  Score=63.44  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=31.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|+||||+||||++++++|++.|+   .|++++|.+.
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   37 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAH---EVRLSDIVDL   37 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEE---EEEECCSSCC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCC---EEEEEeCCCc
Confidence            5899999999999999999999986   8999998754

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=98.49  E-value=2e-07  Score=60.37  Aligned_cols=36  Identities=28%  Similarity=0.385  Sum_probs=32.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +|+++||||+|+||++++++|+++|+   .|++++|+..
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   37 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGF---DIAVADLPQQ   37 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC---EEEEEECGGG
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCcc
Confidence            68999999999999999999999988   7888888643

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=98.49  E-value=2.1e-07  Score=60.84  Aligned_cols=38  Identities=16%  Similarity=0.147  Sum_probs=33.2

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ..+++|+++||||+|+||++++++|+++|+   .|+++.+.
T Consensus        14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~---~V~~~~~~   51 (270)
T 3is3_A           14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGA---KVVVNYAN   51 (270)
T ss_dssp             TCCTTCEEEESCTTSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred             CCcCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCC
Confidence            347899999999999999999999999988   77776654

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=98.49  E-value=2.5e-07  Score=59.49  Aligned_cols=35  Identities=11%  Similarity=0.038  Sum_probs=31.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+++||||+|+||++++++|+++|+   .|++++|+..
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~~   36 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH---QIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCch
Confidence            5799999999999999999999988   8888998754

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=98.49  E-value=1.6e-07  Score=61.60  Aligned_cols=38  Identities=16%  Similarity=0.205  Sum_probs=34.5

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|+++||||+|+||.++++.|+++|.   .|++++|+.
T Consensus        25 ~l~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~   62 (270)
T 3ftp_A           25 TLDKQVAIVTGASRGIGRAIALELARRGA---MVIGTATTE   62 (270)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            37789999999999999999999999998   888888864

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=98.49  E-value=2.9e-07  Score=59.86  Aligned_cols=37  Identities=11%  Similarity=0.180  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCC--ChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGT--GFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~t--G~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+  |+||++++++|+++|+   .|++++|+.
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~---~V~~~~r~~   45 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGA---ELAFTYQND   45 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC---EEEEEESST
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCC---EEEEEcCcH
Confidence            568999999999  9999999999999988   888888875

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=98.49  E-value=2e-07  Score=60.43  Aligned_cols=37  Identities=19%  Similarity=0.320  Sum_probs=33.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||.++++.|+++|+   .|++++|+.
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   39 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGA---TVYITGRHL   39 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5689999999999999999999999988   788888864

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.49  E-value=1.8e-07  Score=61.29  Aligned_cols=37  Identities=19%  Similarity=0.378  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   40 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGA---NVTITGRSS   40 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999988   888888864

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=98.49  E-value=2.3e-07  Score=60.05  Aligned_cols=36  Identities=22%  Similarity=0.333  Sum_probs=30.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|+++||||+|+||.+++++|+++|+   .|++++|.
T Consensus         7 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~   42 (257)
T 3tl3_A            7 IRDAVAVVTGGASGLGLATTKRLLDAGA---QVVVLDIR   42 (257)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHHTC---EEEEEESS
T ss_pred             ecCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCc
Confidence            6789999999999999999999999998   78888884

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=98.49  E-value=1.9e-07  Score=60.14  Aligned_cols=36  Identities=19%  Similarity=0.229  Sum_probs=31.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|.
T Consensus         2 l~~k~~lVTGas~gIG~~ia~~l~~~G~---~V~~~~~~   37 (246)
T 3osu_A            2 KMTKSALVTGASRGIGRSIALQLAEEGY---NVAVNYAG   37 (246)
T ss_dssp             CCSCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCC
Confidence            4678999999999999999999999988   77777664

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=98.48  E-value=2.8e-07  Score=60.15  Aligned_cols=37  Identities=16%  Similarity=0.234  Sum_probs=34.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||.++++.|+++|+   .|++++|+.
T Consensus        18 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~   54 (266)
T 4egf_A           18 LDGKRALITGATKGIGADIARAFAAAGA---RLVLSGRDV   54 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999988   788888864

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=98.48  E-value=3.2e-07  Score=59.99  Aligned_cols=38  Identities=3%  Similarity=0.069  Sum_probs=34.3

Q ss_pred             ccCcEEEEEcCC--ChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGT--GFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~t--G~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+++||||+  |+||++++++|+++|+   .|++++|+..
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~---~V~~~~r~~~   43 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA---TLAFTYLNES   43 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTC---EEEEEESSTT
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            568999999999  9999999999999988   8888998764

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=98.48  E-value=2.4e-07  Score=58.42  Aligned_cols=35  Identities=23%  Similarity=0.286  Sum_probs=31.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHH-HhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLL-RSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~-~~g~~~~~V~~l~r~~~   64 (82)
                      ++|+||||+|+||++++++|+ +.|+   .|++++|++.
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~---~V~~~~r~~~   41 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM---HITLYGRQLK   41 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC---EEEEEESSHH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc---eEEEEecCcc
Confidence            569999999999999999999 8887   8999999754

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=98.48  E-value=2.2e-07  Score=60.13  Aligned_cols=37  Identities=19%  Similarity=0.276  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         7 l~gk~~lVTGas~gIG~a~a~~l~~~G~---~V~~~~r~~   43 (248)
T 3op4_A            7 LEGKVALVTGASRGIGKAIAELLAERGA---KVIGTATSE   43 (248)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999998   788888864

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=98.48  E-value=4.3e-07  Score=59.92  Aligned_cols=37  Identities=19%  Similarity=0.290  Sum_probs=34.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+||+++||||++.||.++++.|+++|.   .|+..+|+.
T Consensus         9 L~GK~alVTGas~GIG~aia~~la~~Ga---~V~~~~r~~   45 (261)
T 4h15_A            9 LRGKRALITAGTKGAGAATVSLFLELGA---QVLTTARAR   45 (261)
T ss_dssp             CTTCEEEESCCSSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCCEEEEeccCcHHHHHHHHHHHHcCC---EEEEEECCc
Confidence            7899999999999999999999999998   888888864

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=98.48  E-value=1.9e-07  Score=60.08  Aligned_cols=35  Identities=17%  Similarity=0.329  Sum_probs=32.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +++|+++||||+|+||++++++|+++|+   .|+++.|
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r   36 (246)
T 2uvd_A            2 LKGKVALVTGASRGIGRAIAIDLAKQGA---NVVVNYA   36 (246)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeC
Confidence            4679999999999999999999999988   7888887

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=98.48  E-value=2e-07  Score=60.78  Aligned_cols=35  Identities=17%  Similarity=0.294  Sum_probs=31.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|
T Consensus         9 ~~~k~~lVTGas~gIG~~ia~~l~~~G~---~V~~~~r   43 (276)
T 1mxh_A            9 SECPAAVITGGARRIGHSIAVRLHQQGF---RVVVHYR   43 (276)
T ss_dssp             --CCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEES
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeC
Confidence            5789999999999999999999999988   8888888

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=98.47  E-value=2.3e-07  Score=61.45  Aligned_cols=37  Identities=22%  Similarity=0.357  Sum_probs=33.2

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+++|+++||||+|+||.++++.|+++|+   .|++.+|.
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~---~V~~~~~~   82 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGA---DVAINYLP   82 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECCG
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCC
Confidence            36789999999999999999999999998   77777775

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=98.47  E-value=3e-07  Score=60.54  Aligned_cols=37  Identities=19%  Similarity=0.451  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus         3 l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~   39 (281)
T 3zv4_A            3 LTGEVALITGGASGLGRALVDRFVAEGA---RVAVLDKSA   39 (281)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCcC---EEEEEeCCH
Confidence            5789999999999999999999999998   888888863

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=98.47  E-value=2e-07  Score=61.45  Aligned_cols=37  Identities=14%  Similarity=0.131  Sum_probs=34.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus        27 l~gk~vlVTGas~gIG~aia~~la~~G~---~V~~~~r~~   63 (277)
T 3gvc_A           27 LAGKVAIVTGAGAGIGLAVARRLADEGC---HVLCADIDG   63 (277)
T ss_dssp             CTTCEEEETTTTSTHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            7789999999999999999999999988   888888864

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=98.47  E-value=2.4e-07  Score=60.65  Aligned_cols=37  Identities=22%  Similarity=0.255  Sum_probs=33.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||+++++.|+++|+   .|++.+|+.
T Consensus        25 l~gk~vlVTGas~gIG~aia~~la~~G~---~V~~~~r~~   61 (266)
T 3grp_A           25 LTGRKALVTGATGGIGEAIARCFHAQGA---IVGLHGTRE   61 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999998   788888753

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=98.47  E-value=2.1e-07  Score=61.75  Aligned_cols=38  Identities=5%  Similarity=0.073  Sum_probs=33.8

Q ss_pred             hccCcEEEEEcCCCh--HHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGF--MGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~--iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|+++||||+|+  ||.++++.|+++|.   .|+++.|+.
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~---~V~~~~r~~   67 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGA---ELAFTYQGD   67 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTC---EEEEEECSH
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            378999999999988  99999999999988   788888863

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=98.46  E-value=1.3e-07  Score=61.31  Aligned_cols=35  Identities=26%  Similarity=0.535  Sum_probs=30.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHh--CCCcceEEEEeCCCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRS--CPGIKNIYLLMRPKHG   65 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~--g~~~~~V~~l~r~~~~   65 (82)
                      +|+||||+||||++++++|+++  |+   .|++++|++..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~---~V~~~~r~~~~   37 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS---QIVAIVRNPAK   37 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG---GEEEEESCTTT
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc---eEEEEEcChHh
Confidence            4899999999999999999998  76   89999997543

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=98.46  E-value=3.3e-07  Score=59.71  Aligned_cols=37  Identities=27%  Similarity=0.337  Sum_probs=33.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~---~V~~~~r~~   42 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGA---AVAFCARDG   42 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999988   788888864

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=98.46  E-value=2.1e-07  Score=61.43  Aligned_cols=37  Identities=16%  Similarity=0.263  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||.++++.|+++|+   .|++++|+.
T Consensus         6 l~gk~vlVTGas~GIG~aia~~la~~G~---~V~~~~r~~   42 (280)
T 3tox_A            6 LEGKIAIVTGASSGIGRAAALLFAREGA---KVVVTARNG   42 (280)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEECCSCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            6789999999999999999999999988   788888864

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.45  E-value=2.5e-07  Score=61.48  Aligned_cols=37  Identities=16%  Similarity=0.334  Sum_probs=33.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||+++++.|+++|+   .|++++|+.
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~---~V~~~~r~~   60 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGA---QVTITGRNE   60 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999988   888888864

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=98.45  E-value=2.5e-07  Score=60.74  Aligned_cols=37  Identities=22%  Similarity=0.375  Sum_probs=32.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||+++++.|+++|.   .|+++.|+.
T Consensus        42 l~~k~vlITGasggIG~~la~~L~~~G~---~V~~~~r~~   78 (285)
T 2c07_A           42 GENKVALVTGAGRGIGREIAKMLAKSVS---HVICISRTQ   78 (285)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSS---EEEEEESSH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHcCC---EEEEEcCCH
Confidence            5689999999999999999999999987   788887753

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=98.45  E-value=2.1e-07  Score=61.14  Aligned_cols=37  Identities=22%  Similarity=0.297  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus        24 l~gk~~lVTGas~gIG~aia~~la~~G~---~V~~~~r~~   60 (271)
T 4ibo_A           24 LGGRTALVTGSSRGLGRAMAEGLAVAGA---RILINGTDP   60 (271)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEECCSCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            7799999999999999999999999988   788888754

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=98.45  E-value=3.5e-07  Score=59.15  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=31.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   36 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF---AVAIADYND   36 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            57899999999999999999999988   888888864

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=98.45  E-value=3.5e-07  Score=60.23  Aligned_cols=36  Identities=22%  Similarity=0.123  Sum_probs=32.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|+++||||+|+||+++++.|+++|+   .|++++|.
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~~~   62 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF---DIAITGIG   62 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESC
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC---eEEEEeCC
Confidence            6789999999999999999999999988   78888763

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=98.44  E-value=4.6e-07  Score=61.05  Aligned_cols=37  Identities=22%  Similarity=0.405  Sum_probs=32.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||.++++.|+++|+   .|++..|+.
T Consensus         3 m~~k~vlVTGas~GIG~aia~~L~~~G~---~V~~~~r~~   39 (324)
T 3u9l_A            3 MSKKIILITGASSGFGRLTAEALAGAGH---RVYASMRDI   39 (324)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESCT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEecCcc
Confidence            4578999999999999999999999998   888888864

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.44  E-value=4.5e-07  Score=61.16  Aligned_cols=34  Identities=29%  Similarity=0.556  Sum_probs=29.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      |+|+|||||||||++++++|+++|+  .+|++++|.
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~--~~v~~~d~~   34 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTD--HHIFEVHRQ   34 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCC--CEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--CEEEEECCC
Confidence            5799999999999999999999975  268888884

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=98.43  E-value=3.4e-07  Score=60.17  Aligned_cols=37  Identities=8%  Similarity=0.166  Sum_probs=33.8

Q ss_pred             ccCcEEEEEcCC--ChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGT--GFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~t--G~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+  |+||.++++.|+++|+   .|++++|+.
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~---~V~~~~r~~   57 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGA---QLAFTYATP   57 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTC---EEEEEESSG
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            678999999999  9999999999999988   888888865

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=98.43  E-value=3.3e-07  Score=59.60  Aligned_cols=36  Identities=28%  Similarity=0.305  Sum_probs=29.9

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      .+++|+++||||+|+||++++++|+++|+   .|+++.+
T Consensus        23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~---~v~i~~~   58 (267)
T 4iiu_A           23 NAMSRSVLVTGASKGIGRAIARQLAADGF---NIGVHYH   58 (267)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEES
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeC
Confidence            36789999999999999999999999988   6655543

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=98.43  E-value=7.4e-07  Score=59.62  Aligned_cols=36  Identities=19%  Similarity=0.199  Sum_probs=33.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|+++||||+|+||.++++.|+++|.   .|++++|+
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~---~Vv~~~r~   60 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGA---RVVVNDIG   60 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECCC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCc
Confidence            6789999999999999999999999998   88888775

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=98.43  E-value=4.6e-07  Score=59.48  Aligned_cols=36  Identities=22%  Similarity=0.379  Sum_probs=32.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|+++||||+|+||++++++|+++|.   .|+++.+.
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~~~   64 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGA---AVALTYVN   64 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCC
Confidence            6789999999999999999999999988   77777554

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=98.43  E-value=7.2e-07  Score=59.71  Aligned_cols=36  Identities=19%  Similarity=0.259  Sum_probs=32.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|+++||||+|+||.++++.|+++|.   .|++++|.
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~---~Vv~~~~~   79 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGA---DIVAIDLC   79 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC---eEEEEecc
Confidence            6789999999999999999999999998   78887765

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=98.42  E-value=5e-07  Score=58.74  Aligned_cols=35  Identities=20%  Similarity=0.408  Sum_probs=31.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +++|+++||||+|+||.+++++|+++|+   .|+++.+
T Consensus         6 l~~k~vlVTGas~GIG~aia~~la~~G~---~V~~~~~   40 (259)
T 3edm_A            6 FTNRTIVVAGAGRDIGRACAIRFAQEGA---NVVLTYN   40 (259)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEEC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcC
Confidence            6789999999999999999999999988   7777744

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=98.42  E-value=4.1e-07  Score=60.30  Aligned_cols=37  Identities=19%  Similarity=0.196  Sum_probs=33.9

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+++|+++||||+|+||.++++.|+++|.   .|++++|+
T Consensus        25 ~l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~~~   61 (299)
T 3t7c_A           25 KVEGKVAFITGAARGQGRSHAITLAREGA---DIIAIDVC   61 (299)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEecc
Confidence            47899999999999999999999999998   88888876

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=98.42  E-value=3.3e-07  Score=60.24  Aligned_cols=37  Identities=19%  Similarity=0.161  Sum_probs=32.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~   62 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGY---GVALAGRRL   62 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            5789999999999999999999999988   788888863

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=98.42  E-value=2e-07  Score=61.29  Aligned_cols=33  Identities=27%  Similarity=0.318  Sum_probs=29.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHh--CCCcceEEEEeCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRS--CPGIKNIYLLMRPK   63 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~--g~~~~~V~~l~r~~   63 (82)
                      +|+||||+||||++++++|+++  |+   .|++++|..
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~---~V~~~~r~~   35 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKK---NVIASDIVQ   35 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGG---GEEEEESSC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCC---EEEEecCCC
Confidence            4899999999999999999998  66   788888754

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=98.41  E-value=5.9e-07  Score=59.55  Aligned_cols=38  Identities=5%  Similarity=0.066  Sum_probs=34.3

Q ss_pred             ccCcEEEEEcCCC--hHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTG--FMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG--~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+++||||+|  +||.++++.|+++|.   .|++++|+..
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~---~V~~~~r~~~   67 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGA---EVALTYLSET   67 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTC---EEEEEESSGG
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCC---EEEEEeCChH
Confidence            6789999999997  999999999999998   7888888743

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=98.41  E-value=3.2e-07  Score=59.09  Aligned_cols=37  Identities=22%  Similarity=0.330  Sum_probs=30.0

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ...++|+++||||+|+||++++++|+++|+   .|+++.+
T Consensus         9 ~~~~~k~vlITGas~giG~~ia~~l~~~G~---~v~~~~~   45 (256)
T 3ezl_A            9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGF---RVVAGCG   45 (256)
T ss_dssp             ----CEEEEETTTTSHHHHHHHHHHHHTTE---EEEEEEC
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeC
Confidence            346789999999999999999999999987   6777663

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=98.41  E-value=6.9e-07  Score=58.59  Aligned_cols=37  Identities=8%  Similarity=0.157  Sum_probs=33.5

Q ss_pred             ccCcEEEEEcCCCh--HHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGF--MGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~--iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+  ||.+++++|+++|+   .|++++|+.
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~---~V~~~~r~~   62 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGA---ELAFTYVGQ   62 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTC---EEEEEECTT
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCC---EEEEeeCch
Confidence            67899999999966  99999999999988   888888876

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=98.41  E-value=4.1e-07  Score=59.59  Aligned_cols=36  Identities=17%  Similarity=0.283  Sum_probs=32.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|+++||||+|+||.+++++|+++|+   .|+++.|.
T Consensus        26 l~~k~vlVTGas~gIG~aia~~la~~G~---~V~~~~~~   61 (269)
T 4dmm_A           26 LTDRIALVTGASRGIGRAIALELAAAGA---KVAVNYAS   61 (269)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCC
Confidence            6789999999999999999999999998   77777774

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=98.41  E-value=2.7e-07  Score=60.80  Aligned_cols=25  Identities=44%  Similarity=0.729  Sum_probs=22.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCP   51 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~   51 (82)
                      |+|+||||+||||++++++|+++|.
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~   26 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESNE   26 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTSC
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCC
Confidence            5799999999999999999999974

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=98.40  E-value=5.4e-07  Score=59.47  Aligned_cols=37  Identities=16%  Similarity=0.171  Sum_probs=33.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|+||.++++.|+++|.   .|++++|+.
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~   62 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGV---TVGALGRTR   62 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5689999999999999999999999988   888888864

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=98.40  E-value=3.7e-07  Score=58.16  Aligned_cols=34  Identities=24%  Similarity=0.284  Sum_probs=29.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE-eCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL-MRP   62 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l-~r~   62 (82)
                      +|+++||||+|+||++++++|+++|+   .|+++ .|+
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~---~v~~~~~r~   35 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGC---KVLVNYARS   35 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCC
Confidence            57899999999999999999999988   77774 665

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=98.40  E-value=3.4e-07  Score=58.31  Aligned_cols=34  Identities=15%  Similarity=0.233  Sum_probs=30.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE-eCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL-MRP   62 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l-~r~   62 (82)
                      +|+++||||+|+||++++++|+++|+   .|+++ .|+
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~---~v~~~~~r~   35 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGF---ALAIHYGQN   35 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTC---EEEEEESSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCC
Confidence            46899999999999999999999987   77777 665

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=98.40  E-value=4.8e-07  Score=58.07  Aligned_cols=36  Identities=14%  Similarity=0.314  Sum_probs=31.2

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ++++|+++||||+|+||.+++++|+++|+   .|+++.+
T Consensus         4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~---~v~~~~~   39 (255)
T 3icc_A            4 MLKGKVALVTGASRGIGRAIAKRLANDGA---LVAIHYG   39 (255)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEES
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCC---eEEEEeC
Confidence            36789999999999999999999999987   6766543

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=98.39  E-value=4.7e-07  Score=58.58  Aligned_cols=37  Identities=27%  Similarity=0.316  Sum_probs=31.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.+|+++||||+|+||.+++++|+++|+   .|+++.|..
T Consensus         5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~---~v~~~~~~~   41 (264)
T 3i4f_A            5 RFVRHALITAGTKGLGKQVTEKLLAKGY---SVTVTYHSD   41 (264)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             cccCEEEEeCCCchhHHHHHHHHHHCCC---EEEEEcCCC
Confidence            3468999999999999999999999988   788876653

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=98.39  E-value=4.2e-07  Score=58.36  Aligned_cols=36  Identities=36%  Similarity=0.445  Sum_probs=29.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||++++++|++ |.   .|++++|+.
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~-g~---~v~~~~r~~   38 (245)
T 3e9n_A            3 LKKKIAVVTGATGGMGIEIVKDLSR-DH---IVYALGRNP   38 (245)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHTT-TS---EEEEEESCH
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHhC-CC---eEEEEeCCH
Confidence            5689999999999999999999987 66   788888864

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=98.38  E-value=4.9e-07  Score=58.84  Aligned_cols=35  Identities=31%  Similarity=0.381  Sum_probs=30.8

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE-eCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL-MRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l-~r~   62 (82)
                      ++|+++||||+|+||++++++|+++|+   .|+++ .|+
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~---~vv~~~~r~   38 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGY---NIVINYARS   38 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC---EEEEEcCCC
Confidence            578999999999999999999999988   67665 664

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=98.38  E-value=7.8e-07  Score=57.14  Aligned_cols=37  Identities=27%  Similarity=0.337  Sum_probs=31.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHH-hCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLR-SCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~-~g~~~~~V~~l~r~~~   64 (82)
                      ++|+++||||+|+||++++++|++ .|.   .|+..+|...
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~---~v~~~~~~~~   40 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNH---TVINIDIQQS   40 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTE---EEEEEESSCC
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCc---EEEEeccccc
Confidence            578999999999999999999999 655   7777777654

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=98.37  E-value=4.5e-07  Score=59.78  Aligned_cols=38  Identities=18%  Similarity=0.231  Sum_probs=34.6

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++||.++||||++.||+++++.|+++|.   .|++.+|+.
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga---~Vv~~~~~~   41 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDS---IVVAVELLE   41 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEECCH
Confidence            37899999999999999999999999998   788888864

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=98.37  E-value=4.8e-07  Score=58.52  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=33.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHH---hCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLR---SCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~---~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+|+||.+++++|++   +|+   .|++++|+.
T Consensus         4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~---~V~~~~r~~   43 (259)
T 1oaa_A            4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS---VMLVSARSE   43 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC---EEEEEESCH
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHhhcCCC---eEEEEeCCH
Confidence            6789999999999999999999999   787   888888864

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=98.36  E-value=6e-07  Score=58.52  Aligned_cols=38  Identities=11%  Similarity=0.142  Sum_probs=33.9

Q ss_pred             ccCcEEEEEcCCC--hHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTG--FMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG--~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+||+++||||+|  .||.++++.|.++|.   .|+..+|++.
T Consensus         4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga---~Vvi~~r~~~   43 (256)
T 4fs3_A            4 LENKTYVIMGIANKRSIAFGVAKVLDQLGA---KLVFTYRKER   43 (256)
T ss_dssp             CTTCEEEEECCCSTTCHHHHHHHHHHHTTC---EEEEEESSGG
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            7899999999876  899999999999998   8888888644

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=98.36  E-value=6.1e-07  Score=59.30  Aligned_cols=37  Identities=22%  Similarity=0.238  Sum_probs=32.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe-CCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM-RPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~-r~~   63 (82)
                      +++|+++||||+|+||.++++.|+++|+   .|++++ |+.
T Consensus         7 l~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~~r~~   44 (291)
T 1e7w_A            7 PTVPVALVTGAAKRLGRSIAEGLHAEGY---AVCLHYHRSA   44 (291)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEcCCCH
Confidence            5789999999999999999999999988   788888 754

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=98.35  E-value=5.1e-07  Score=59.58  Aligned_cols=37  Identities=19%  Similarity=0.195  Sum_probs=34.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+||.++||||++.||+++++.|+++|.   .|+..+|+.
T Consensus         7 L~gKvalVTGas~GIG~aia~~la~~Ga---~Vvi~~~~~   43 (255)
T 4g81_D            7 LTGKTALVTGSARGLGFAYAEGLAAAGA---RVILNDIRA   43 (255)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEECCSCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            7899999999999999999999999998   888888854

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=98.35  E-value=3.9e-07  Score=58.97  Aligned_cols=36  Identities=14%  Similarity=0.001  Sum_probs=32.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      |+++||||+|+||++++++|+++|+   .|++++|+...
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~   37 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH---TVACHDESFKQ   37 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC---EEEECCGGGGS
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            5799999999999999999999988   88888886543

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=98.35  E-value=1e-06  Score=57.08  Aligned_cols=37  Identities=16%  Similarity=0.257  Sum_probs=33.3

Q ss_pred             ccCcEEEEEcCCC-hHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTG-FMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG-~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||+| .||++++++|+++|+   .|++++|+.
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~---~V~~~~r~~   57 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGA---DVVISDYHE   57 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCC---EEEEecCCH
Confidence            6799999999998 699999999999988   788888864

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=98.35  E-value=6e-07  Score=57.17  Aligned_cols=34  Identities=21%  Similarity=0.257  Sum_probs=30.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+++||||+|+||++++++|+++|+   .|++++|+.
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~   35 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK---ATYLTGRSE   35 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5799999999999999999999988   788888864

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=98.34  E-value=6.4e-07  Score=58.36  Aligned_cols=37  Identities=24%  Similarity=0.380  Sum_probs=31.4

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++++|+++||||+|+||++++++|+++|.   .|+++++.
T Consensus        22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~---~v~~~~~~   58 (269)
T 3gk3_A           22 MQAKRVAFVTGGMGGLGAAISRRLHDAGM---AVAVSHSE   58 (269)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHTTTC---EEEEEECS
T ss_pred             hhcCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCC
Confidence            36789999999999999999999999988   77777743

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=98.34  E-value=9.8e-07  Score=57.77  Aligned_cols=35  Identities=17%  Similarity=0.244  Sum_probs=29.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +++|+++||||+|+||++++++|+++|+   .|++..+
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~---~Vv~~~~   59 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGF---TVVINYA   59 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTC---EEEEEES
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEcC
Confidence            5789999999999999999999999988   6766644

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=98.33  E-value=7.2e-07  Score=60.08  Aligned_cols=37  Identities=22%  Similarity=0.238  Sum_probs=32.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe-CCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM-RPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~-r~~   63 (82)
                      +++|+++||||+|+||.++++.|+++|+   .|++++ |+.
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~G~---~Vv~~~~r~~   81 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAEGY---AVCLHYHRSA   81 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCCCH
Confidence            6789999999999999999999999988   788888 753

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=98.33  E-value=8.4e-07  Score=58.76  Aligned_cols=42  Identities=24%  Similarity=0.339  Sum_probs=35.5

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ..+++|+++||||+|+||.++++.|+++|.....|+...|+.
T Consensus        29 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~   70 (287)
T 3rku_A           29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRL   70 (287)
T ss_dssp             HHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             hhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCH
Confidence            447899999999999999999999999976444778888864

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=98.30  E-value=9.3e-07  Score=57.59  Aligned_cols=37  Identities=8%  Similarity=0.086  Sum_probs=33.4

Q ss_pred             ccCcEEEEEcC--CChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGG--TGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~--tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+++||||  +|+||++++++|+++|+   .|++++|+.
T Consensus         5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~---~V~~~~r~~   43 (269)
T 2h7i_A            5 LDGKRILVSGIITDSSIAFHIARVAQEQGA---QLVLTGFDR   43 (269)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTC---EEEEEECSC
T ss_pred             cCCCEEEEECCCCCCchHHHHHHHHHHCCC---EEEEEecCh
Confidence            67899999999  99999999999999988   788888864

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=98.30  E-value=9.6e-07  Score=58.16  Aligned_cols=38  Identities=18%  Similarity=0.269  Sum_probs=34.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+||.++||||++.||.++++.|.++|.   .|++.+|+..
T Consensus         7 L~GKvalVTGas~GIG~aiA~~la~~Ga---~Vvi~~r~~~   44 (247)
T 4hp8_A            7 LEGRKALVTGANTGLGQAIAVGLAAAGA---EVVCAARRAP   44 (247)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSCC
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHcCC---EEEEEeCCcH
Confidence            7899999999999999999999999998   8888888644

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=98.29  E-value=1.1e-06  Score=57.17  Aligned_cols=34  Identities=21%  Similarity=0.214  Sum_probs=29.3

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL   59 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l   59 (82)
                      +.++++++||||+|+||++++++|+++|+   .|+.+
T Consensus        23 m~~~k~vlITGas~gIG~a~a~~l~~~G~---~V~~~   56 (272)
T 4e3z_A           23 MSDTPVVLVTGGSRGIGAAVCRLAARQGW---RVGVN   56 (272)
T ss_dssp             -CCSCEEEETTTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEE
Confidence            34578999999999999999999999988   66655

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=98.27  E-value=8.8e-07  Score=58.20  Aligned_cols=36  Identities=19%  Similarity=0.314  Sum_probs=32.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++ |+++||||+|+||.+++++|+++|+   .|++++|+.
T Consensus        20 ~~-k~vlVTGas~gIG~aia~~La~~G~---~V~~~~r~~   55 (272)
T 2nwq_A           20 MS-STLFITGATSGFGEACARRFAEAGW---SLVLTGRRE   55 (272)
T ss_dssp             -C-CEEEESSTTTSSHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cC-cEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            45 8999999999999999999999988   888888864

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=98.26  E-value=2.3e-06  Score=57.51  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=31.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +++|+++||||+|+||.++++.|+++|+   .|++.+|
T Consensus         7 l~gk~~lVTGas~GIG~~~a~~La~~Ga---~Vv~~~~   41 (319)
T 1gz6_A            7 FDGRVVLVTGAGGGLGRAYALAFAERGA---LVVVNDL   41 (319)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEcC
Confidence            6789999999999999999999999988   7777655

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=98.26  E-value=7.7e-07  Score=57.25  Aligned_cols=35  Identities=20%  Similarity=0.132  Sum_probs=30.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE-e--CCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL-M--RPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l-~--r~~   63 (82)
                      +|+++||||+|+||.+++++|+++|+   .|+++ .  |+.
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~~~~r~~   38 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGY---TVVCHDASFADA   38 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTC---EEEECCGGGGSH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC---EEEEecCCcCCH
Confidence            47899999999999999999999988   78888 5  753

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=98.25  E-value=1.1e-06  Score=56.79  Aligned_cols=34  Identities=21%  Similarity=0.334  Sum_probs=30.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+++||||+|+||+++++.|+++|+   .|++++|+.
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~   34 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH---KVIATGRRQ   34 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5799999999999999999999988   888888864

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=98.24  E-value=1.3e-06  Score=56.51  Aligned_cols=39  Identities=15%  Similarity=0.152  Sum_probs=34.4

Q ss_pred             ccCcEEEEEcCC--ChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         24 YQNRSVFVTGGT--GFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        24 ~~~~~ilItG~t--G~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +++|+++||||+  |+||.+++++|++.|.   .|+++.|+...
T Consensus        18 l~~k~vlITGas~~~giG~~~a~~l~~~G~---~v~~~~~~~~~   58 (267)
T 3gdg_A           18 LKGKVVVVTGASGPKGMGIEAARGCAEMGA---AVAITYASRAQ   58 (267)
T ss_dssp             CTTCEEEETTCCSSSSHHHHHHHHHHHTSC---EEEECBSSSSS
T ss_pred             cCCCEEEEECCCCCCChHHHHHHHHHHCCC---eEEEEeCCcch
Confidence            689999999999  8999999999999988   78888876543

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=98.23  E-value=2e-06  Score=55.69  Aligned_cols=37  Identities=24%  Similarity=0.373  Sum_probs=31.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +|+++||||+|+||++++++|+++|.++ .|+...|+.
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~-~v~~~~r~~   38 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDT-VVYGVARSE   38 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSC-EEEEEESCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCe-EEEEecCCH
Confidence            6899999999999999999999996433 677777753

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=98.22  E-value=2.4e-06  Score=56.11  Aligned_cols=35  Identities=29%  Similarity=0.421  Sum_probs=31.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +|+|+||||++.||+++++.|+++|.   .|...+|++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga---~V~~~~~~~   36 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGD---KVCFIDIDE   36 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            58999999999999999999999998   788888853

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=98.21  E-value=2.4e-06  Score=54.41  Aligned_cols=38  Identities=16%  Similarity=0.250  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCc----ceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGI----KNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~----~~V~~l~r~~   63 (82)
                      +|+++||||+|+||++++++|+++|+..    ..|++++|+.
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~   43 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA   43 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCH
Confidence            6789999999999999999999997510    0577777753

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=98.20  E-value=9.7e-07  Score=59.41  Aligned_cols=34  Identities=18%  Similarity=0.244  Sum_probs=28.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +|+|+||||+|+||.+++++|+++|+   .|+.+.|.
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~---~v~~v~r~   35 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPS---QSFKVYAT   35 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT---CCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC---ceEEEEee
Confidence            68999999999999999999999987   45555543

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=98.18  E-value=2e-06  Score=56.69  Aligned_cols=35  Identities=14%  Similarity=0.202  Sum_probs=31.1

Q ss_pred             ccCcEEEEEcCC--ChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGT--GFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~t--G~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +++|+++||||+  |+||.++++.|+++|+   .|++++|
T Consensus         6 l~~k~~lVTGas~~~GIG~aia~~la~~G~---~V~~~~r   42 (297)
T 1d7o_A            6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGA---EILVGTW   42 (297)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHHTTC---EEEEEEE
T ss_pred             cCCCEEEEECCCCCCChHHHHHHHHHHCCC---eEEEeec
Confidence            678999999999  9999999999999988   6777653

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=98.18  E-value=4e-06  Score=59.44  Aligned_cols=39  Identities=31%  Similarity=0.418  Sum_probs=33.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      -.+++++||||+|+||.+++++|+++|.  ..|+.++|+..
T Consensus       224 ~~~~~vLITGgtGgIG~~la~~La~~G~--~~vvl~~R~~~  262 (486)
T 2fr1_A          224 KPTGTVLVTGGTGGVGGQIARWLARRGA--PHLLLVSRSGP  262 (486)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHHTC--SEEEEEESSGG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCC--CEEEEEcCCCC
Confidence            4578999999999999999999999976  24888888754

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=98.15  E-value=2.8e-06  Score=59.78  Aligned_cols=38  Identities=16%  Similarity=0.194  Sum_probs=33.9

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++++++||||+|+||.++++.|+++|.   .|++++|+.
T Consensus       210 ~l~gk~~LVTGgsgGIG~aiA~~La~~Ga---~Vvl~~r~~  247 (454)
T 3u0b_A          210 PLDGKVAVVTGAARGIGATIAEVFARDGA---TVVAIDVDG  247 (454)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEECGG
T ss_pred             CCCCCEEEEeCCchHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            46789999999999999999999999987   788888754

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=98.12  E-value=4.1e-06  Score=60.81  Aligned_cols=37  Identities=16%  Similarity=0.140  Sum_probs=32.1

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ..+++|+++||||+|+||+++++.|+++|.   .|++++|
T Consensus        15 ~~l~gk~~lVTGas~GIG~aiA~~La~~Ga---~Vv~~~r   51 (613)
T 3oml_A           15 LRYDGRVAVVTGAGAGLGREYALLFAERGA---KVVVNDL   51 (613)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEC--
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeC
Confidence            347899999999999999999999999998   7888776

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=98.12  E-value=2.6e-06  Score=52.92  Aligned_cols=32  Identities=28%  Similarity=0.398  Sum_probs=28.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+++||||+|+||++++++|+++     .|++++|++
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~-----~V~~~~r~~   32 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH-----DLLLSGRRA   32 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS-----EEEEECSCH
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC-----CEEEEECCH
Confidence            57999999999999999999887     688888864

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=98.10  E-value=4.5e-06  Score=55.58  Aligned_cols=35  Identities=17%  Similarity=0.216  Sum_probs=31.5

Q ss_pred             ccCcEEEEEcC--CChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGG--TGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~--tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +++|+++||||  +|+||.++++.|+++|+   .|++++|
T Consensus         7 l~gk~~lVTGa~~s~GIG~aia~~la~~G~---~Vv~~~r   43 (315)
T 2o2s_A            7 LRGQTAFVAGVADSHGYGWAIAKHLASAGA---RVALGTW   43 (315)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHTTTC---EEEEEEC
T ss_pred             CCCCEEEEeCCCCCCChHHHHHHHHHHCCC---EEEEEec
Confidence            67899999999  89999999999999988   7777765

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=98.10  E-value=6.2e-06  Score=54.50  Aligned_cols=37  Identities=22%  Similarity=0.211  Sum_probs=33.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++||||+|++|++++..|++.|.   .|++++|+.
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~---~V~i~~R~~  153 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGA---EVVLCGRKL  153 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC---EEEEEECCH
Confidence            5789999999999999999999999987   688888864

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=98.10  E-value=7.8e-06  Score=58.39  Aligned_cols=39  Identities=26%  Similarity=0.439  Sum_probs=33.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ..+++++||||+|+||.+++++|.+.|.  ..|+.++|+..
T Consensus       257 ~~~~~vLITGgtGgIG~~lA~~La~~G~--~~vvl~~R~~~  295 (511)
T 2z5l_A          257 QPSGTVLITGGMGAIGRRLARRLAAEGA--ERLVLTSRRGP  295 (511)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTC--SEEEEEESSGG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCC--cEEEEEecCCc
Confidence            4578999999999999999999999875  25888888754

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=98.08  E-value=4.1e-06  Score=56.33  Aligned_cols=37  Identities=27%  Similarity=0.239  Sum_probs=30.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCC----CcceEEEEeCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCP----GIKNIYLLMRP   62 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~----~~~~V~~l~r~   62 (82)
                      .++|+||||+||||++++..|+++|.    ...+|+.+++.
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~   44 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIP   44 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCC
Confidence            36899999999999999999999863    12378888774

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=98.07  E-value=6e-06  Score=54.98  Aligned_cols=35  Identities=14%  Similarity=0.205  Sum_probs=31.5

Q ss_pred             ccCcEEEEEcC--CChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGG--TGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~--tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +++|+++||||  +++||.++++.|+++|+   .|++++|
T Consensus         7 l~~k~~lVTGa~~s~GIG~aia~~la~~G~---~Vv~~~r   43 (319)
T 2ptg_A            7 LRGKTAFVAGVADSNGYGWAICKLLRAAGA---RVLVGTW   43 (319)
T ss_dssp             CTTCEEEEECCCCTTSHHHHHHHHHHHTTC---EEEEEEC
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHCCC---EEEEEec
Confidence            57899999999  89999999999999988   7777765

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.05  E-value=7.6e-06  Score=46.45  Aligned_cols=34  Identities=18%  Similarity=0.267  Sum_probs=30.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhC-CCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSC-PGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g-~~~~~V~~l~r~~   63 (82)
                      +++|+|+|+ |++|+.+++.|.+.| +   .|++++|++
T Consensus         5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~---~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGA-GKIGQMIAALLKTSSNY---SVTVADHDL   39 (118)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCSSE---EEEEEESCH
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCCc---eEEEEeCCH
Confidence            478999999 999999999999997 4   788888864

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=98.05  E-value=1.2e-05  Score=57.28  Aligned_cols=37  Identities=32%  Similarity=0.444  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++||||+|+||.+++++|.++|.  ..|+.+.|+..
T Consensus       239 ~~~vLITGgsgGIG~alA~~La~~Ga--~~vvl~~R~~~  275 (496)
T 3mje_A          239 HGSVLVTGGTGGIGGRVARRLAEQGA--AHLVLTSRRGA  275 (496)
T ss_dssp             CSEEEEETCSSHHHHHHHHHHHHTTC--SEEEEEESSGG
T ss_pred             CCEEEEECCCCchHHHHHHHHHHCCC--cEEEEEeCCCC
Confidence            48999999999999999999999975  36777888643

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=98.02  E-value=1.2e-05  Score=52.61  Aligned_cols=36  Identities=31%  Similarity=0.588  Sum_probs=32.1

Q ss_pred             cCcEEEEEcC----------------CChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGG----------------TGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~----------------tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +||+|+||||                +|.+|.++++.++++|+   .|+.++|+.
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga---~V~lv~~~~   53 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGY---EVCLITTKR   53 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTC---EEEEEECTT
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            5899999999                99999999999999998   788888853

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=98.00  E-value=1.3e-05  Score=52.19  Aligned_cols=36  Identities=25%  Similarity=0.466  Sum_probs=31.9

Q ss_pred             ccCcEEEEEcC----------------CChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGG----------------TGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~----------------tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++|++|+||||                +|.+|.++++.|.++|+   .|+.++++
T Consensus         6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga---~V~l~~~~   57 (226)
T 1u7z_A            6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGA---NVTLVSGP   57 (226)
T ss_dssp             TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTC---EEEEEECS
T ss_pred             CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCC---EEEEEECC
Confidence            67999999999                69999999999999998   77777664

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=97.82  E-value=3.1e-05  Score=55.39  Aligned_cols=38  Identities=21%  Similarity=0.272  Sum_probs=31.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE-eCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL-MRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l-~r~~   63 (82)
                      -.+++++||||+|+||.+++++|.++|..  .|+.+ +|+.
T Consensus       249 ~~~~~vLITGgsgGIG~~lA~~La~~G~~--~vvl~~~R~~  287 (525)
T 3qp9_A          249 QADGTVLVTGAEEPAAAEAARRLARDGAG--HLLLHTTPSG  287 (525)
T ss_dssp             CTTSEEEESSTTSHHHHHHHHHHHHHTCC--EEEEEECCCC
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCC--EEEEEeCCCC
Confidence            45799999999999999999999999762  36666 7764

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=97.72  E-value=8.1e-05  Score=52.38  Aligned_cols=38  Identities=16%  Similarity=0.056  Sum_probs=33.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHH-hCCCcceEEEEeCCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLR-SCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~-~g~~~~~V~~l~r~~~~   65 (82)
                      .+|+++||||++.||.+++..|.+ .|.   .|++++|+...
T Consensus        60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA---~Vv~~~r~~~~   98 (422)
T 3s8m_A           60 GPKKVLVIGASSGYGLASRITAAFGFGA---DTLGVFFEKPG   98 (422)
T ss_dssp             SCSEEEEESCSSHHHHHHHHHHHHHHCC---EEEEEECCCCC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhCCC---EEEEEeCCchh
Confidence            478999999999999999999999 988   78888876543

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=97.69  E-value=7.7e-05  Score=54.18  Aligned_cols=37  Identities=16%  Similarity=0.274  Sum_probs=32.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|.++||||++.||+++++.|+++|.   .|++.+|..
T Consensus         6 l~gkvalVTGas~GIG~a~A~~la~~Ga---~Vv~~~~~~   42 (604)
T 2et6_A            6 FKDKVVIITGAGGGLGKYYSLEFAKLGA---KVVVNDLGG   42 (604)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECC--
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCC---EEEEEeCCc
Confidence            6789999999999999999999999998   777777643

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=97.65  E-value=0.00011  Score=51.42  Aligned_cols=39  Identities=13%  Similarity=0.055  Sum_probs=33.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHH-hCCCcceEEEEeCCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLR-SCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~-~g~~~~~V~~l~r~~~~   65 (82)
                      ..+|+++||||++.||.+++..|++ +|.   .|++++|+...
T Consensus        45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA---~Vv~~~~~~~~   84 (405)
T 3zu3_A           45 NGPKRVLVIGASTGYGLAARITAAFGCGA---DTLGVFFERPG   84 (405)
T ss_dssp             TCCSEEEEESCSSHHHHHHHHHHHHHHCC---EEEEEECCCCC
T ss_pred             CCCCEEEEeCcchHHHHHHHHHHHHhcCC---EEEEEeCCchh
Confidence            3478999999999999999999999 988   78877776443

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=97.60  E-value=8.1e-05  Score=54.08  Aligned_cols=36  Identities=14%  Similarity=0.175  Sum_probs=32.4

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      .+++|.++||||++.||.++++.|.++|.   .|++.+|
T Consensus       319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga---~Vv~~~~  354 (604)
T 2et6_A          319 SLKDKVVLITGAGAGLGKEYAKWFAKYGA---KVVVNDF  354 (604)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEECS
T ss_pred             ccCCCeEEEECcchHHHHHHHHHHHHCCC---EEEEEeC
Confidence            36789999999999999999999999998   7777775

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=97.60  E-value=0.00018  Score=50.40  Aligned_cols=39  Identities=8%  Similarity=0.038  Sum_probs=33.6

Q ss_pred             ccCcEEEEEcCCChHHHH--HHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKV--LVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~--i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ..+|+++||||++.||.+  ++..|.++|.   .|++++|+...
T Consensus        58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga---~Vi~~~r~~~~   98 (418)
T 4eue_A           58 RGPKKVLIVGASSGFGLATRISVAFGGPEA---HTIGVSYETGA   98 (418)
T ss_dssp             CCCSEEEEESCSSHHHHHHHHHHHHSSSCC---EEEEEECCCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHHhCCC---EEEEEecCcch
Confidence            468999999999999999  9999999888   78888886443

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=97.60  E-value=0.00011  Score=49.19  Aligned_cols=33  Identities=15%  Similarity=0.164  Sum_probs=27.8

Q ss_pred             cCcEEEEEcCCC--hHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         25 QNRSVFVTGGTG--FMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        25 ~~~~ilItG~tG--~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      ++|+++||||++  .||.+++++|+++|+   .|++..
T Consensus         1 ~~k~~lITGas~~~GIG~aiA~~la~~G~---~Vv~~~   35 (329)
T 3lt0_A            1 NEDICFIAGIGDTNGYGWGIAKELSKRNV---KIIFGI   35 (329)
T ss_dssp             CCCEEEEECCSSSSSHHHHHHHHHHHTTC---EEEEEE
T ss_pred             CCcEEEEECCCCCCchHHHHHHHHHHCCC---EEEEEe
Confidence            368999999875  999999999999988   666544

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.57  E-value=9.8e-05  Score=43.01  Aligned_cols=35  Identities=23%  Similarity=0.278  Sum_probs=28.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++++|+|+|+ |.+|..+++.|.+.|.   .|++++|+
T Consensus         4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~---~v~~~d~~   38 (144)
T 2hmt_A            4 IKNKQFAVIGL-GRFGGSIVKELHRMGH---EVLAVDIN   38 (144)
T ss_dssp             --CCSEEEECC-SHHHHHHHHHHHHTTC---CCEEEESC
T ss_pred             CcCCcEEEECC-CHHHHHHHHHHHHCCC---EEEEEeCC
Confidence            34578999998 9999999999999987   67777764

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.54  E-value=0.00011  Score=43.26  Aligned_cols=34  Identities=21%  Similarity=0.233  Sum_probs=29.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++++|+|+ |.+|+++++.|.+.|+   .|+++++++
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~---~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGK---KVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC---eEEEEECCH
Confidence            468999998 9999999999999988   788888753

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.53  E-value=0.00015  Score=44.86  Aligned_cols=36  Identities=19%  Similarity=0.195  Sum_probs=31.6

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|+|+||+|.+|..+++.+...|.   .|++++|++
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~---~V~~~~~~~   73 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGA---RIYTTAGSD   73 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTC---EEEEEESSH
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            578999999999999999999999987   788888753

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.53  E-value=0.00022  Score=41.32  Aligned_cols=34  Identities=24%  Similarity=0.295  Sum_probs=28.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+|+|+ |++|..+++.|.+.|.   .|++++|++
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~---~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGH---DIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            468999987 9999999999999987   788888753

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.49  E-value=0.00024  Score=42.64  Aligned_cols=41  Identities=12%  Similarity=0.231  Sum_probs=31.8

Q ss_pred             hhhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        20 ~~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++....+++|+|.|+ |.+|..++..|.+.|.   .|++++|++.
T Consensus        13 ~~~~~~~~~v~IiG~-G~iG~~la~~L~~~g~---~V~vid~~~~   53 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGC-GRLGSLIANLASSSGH---SVVVVDKNEY   53 (155)
T ss_dssp             ----CCCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCGG
T ss_pred             hhcccCCCcEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCHH
Confidence            444566789999986 9999999999999987   7888888643

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.42  E-value=0.0003  Score=43.99  Aligned_cols=35  Identities=31%  Similarity=0.333  Sum_probs=30.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|+|+||+|++|++++..|.+.|+   +|+.++|++.
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~---~V~~~~r~~~   35 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH---EIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESSHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            4689999999999999999999987   7888888643

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=97.41  E-value=0.00019  Score=48.56  Aligned_cols=37  Identities=16%  Similarity=0.112  Sum_probs=30.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++|+|+||+||+|..++..|++++. +.+|+++++++
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~-~~ev~l~Di~~   44 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPL-VSVLHLYDVVN   44 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTT-EEEEEEEESSS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEeCCC
Confidence            46899999999999999999988862 34788888654

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=97.41  E-value=0.0002  Score=57.18  Aligned_cols=37  Identities=19%  Similarity=0.383  Sum_probs=32.0

Q ss_pred             ccCcEEEEEcCCCh-HHHHHHHHHHHhCCCcceEEEE-eCCC
Q psy16528         24 YQNRSVFVTGGTGF-MGKVLVEKLLRSCPGIKNIYLL-MRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~-iG~~i~~~l~~~g~~~~~V~~l-~r~~   63 (82)
                      +++|+++||||+|+ ||.++++.|++.|.   .|+++ .|+.
T Consensus       474 L~GKvALVTGASgGGIGrAIAr~LA~~GA---~VVL~~~R~~  512 (1688)
T 2pff_A          474 FKDKYVLITGAGKGSIGAEVLQGLLQGGA---KVVVTTSRFS  512 (1688)
T ss_dssp             CCSCCEEECSCSSSSTHHHHHHHHHHHTC---EEEEEESSCS
T ss_pred             cCCCEEEEECCChHHHHHHHHHHHHHCcC---EEEEEeCCCH
Confidence            67899999999998 99999999999988   77776 4543

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=97.37  E-value=0.0003  Score=56.84  Aligned_cols=35  Identities=17%  Similarity=0.369  Sum_probs=31.2

Q ss_pred             ccCcEEEEEcCCCh-HHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGF-MGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~-iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +++++++||||+|+ ||.++++.|++.|.   .|+++++
T Consensus       650 L~gKvaLVTGASgGgIG~aIAr~LA~~GA---~VVl~~~  685 (1878)
T 2uv9_A          650 FQGKHALMTGAGAGSIGAEVLQGLLSGGA---KVIVTTS  685 (1878)
T ss_dssp             CTTCEEEEESCCTTSHHHHHHHHHHHTTC---EEEEEES
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHHCCC---EEEEEec
Confidence            67899999999999 99999999999987   7777754

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=97.35  E-value=0.00041  Score=51.87  Aligned_cols=38  Identities=32%  Similarity=0.507  Sum_probs=32.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHH-HhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLL-RSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~-~~g~~~~~V~~l~r~~~   64 (82)
                      .+++++||||+|.||.++++.|. +.|.  ..|+.++|+..
T Consensus       529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga--~~vvl~~R~~~  567 (795)
T 3slk_A          529 AAGTVLVTGGTGALGAEVARHLVIERGV--RNLVLVSRRGP  567 (795)
T ss_dssp             TTSEEEEETTTSHHHHHHHHHHHHTSSC--CEEEEEESSGG
T ss_pred             cccceeeccCCCCcHHHHHHHHHHHcCC--cEEEEeccCcc
Confidence            57899999999999999999999 6765  35888888744

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.30  E-value=0.00052  Score=41.02  Aligned_cols=33  Identities=12%  Similarity=0.171  Sum_probs=28.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .++++|+|+ |.+|+++++.|.+.|+   .|++++++
T Consensus         3 ~~~vlI~G~-G~vG~~la~~L~~~g~---~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGH-SILAINTILQLNQRGQ---NVTVISNL   35 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC---CEEEEECC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC---CEEEEECC
Confidence            467899986 9999999999999987   78888875

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=97.30  E-value=0.00042  Score=46.48  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=28.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ++|+||||+||+|++++..|+..+. ..++..+++
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~-~~el~L~Di   34 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPF-MKDLVLIGR   34 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEEC
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCC-CCEEEEEcC
Confidence            4799999999999999999998753 346777776

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=97.28  E-value=0.00036  Score=56.41  Aligned_cols=36  Identities=19%  Similarity=0.393  Sum_probs=31.6

Q ss_pred             ccCcEEEEEcCCCh-HHHHHHHHHHHhCCCcceEEEE-eCC
Q psy16528         24 YQNRSVFVTGGTGF-MGKVLVEKLLRSCPGIKNIYLL-MRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~-iG~~i~~~l~~~g~~~~~V~~l-~r~   62 (82)
                      +++++++||||+++ ||.++++.|++.|.   .|+++ .|+
T Consensus       673 l~gKvaLVTGASsGgIG~aIA~~La~~GA---~Vvl~~~R~  710 (1887)
T 2uv8_A          673 FKDKYVLITGAGKGSIGAEVLQGLLQGGA---KVVVTTSRF  710 (1887)
T ss_dssp             CTTCEEEEESCCSSSHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHHCCC---EEEEEecCC
Confidence            67899999999998 99999999999988   77777 454

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=97.26  E-value=0.00041  Score=46.85  Aligned_cols=37  Identities=24%  Similarity=0.171  Sum_probs=29.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCC----CcceEEEEeCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCP----GIKNIYLLMRP   62 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~----~~~~V~~l~r~   62 (82)
                      .++|+||||+||+|++++..|+..+.    ...+|..+++.
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence            46899999999999999999988753    12367777764

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=97.23  E-value=0.0005  Score=57.66  Aligned_cols=38  Identities=16%  Similarity=0.186  Sum_probs=34.5

Q ss_pred             ccCcEEEEEcCCCh-HHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGF-MGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~-iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |++|+++||||++. ||.++++.|++.|.   .|++.+|+..
T Consensus      2134 l~gKvaLVTGAs~GsIG~AiA~~La~~GA---~Vvi~~r~~~ 2172 (3089)
T 3zen_D         2134 XXDEVAVVTGASKGSIAASVVGQLLDGGA---TVIATTSRLD 2172 (3089)
T ss_dssp             CCCCEEEEESCCTTSHHHHHHHHHHHTTC---EEEEEESCCS
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHHCCC---EEEEEeCChh
Confidence            78999999999999 99999999999998   8888888654

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.00065  Score=45.61  Aligned_cols=37  Identities=14%  Similarity=0.101  Sum_probs=32.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+++|+|+|++|.+|..+++.+...|.   .|++++|++.
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga---~V~~~~~~~~  205 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGY---RVLGIDGGEG  205 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECSTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC---cEEEEcCCHH
Confidence            578999999999999999999998876   7888887644

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=97.16  E-value=0.0009  Score=44.57  Aligned_cols=36  Identities=14%  Similarity=0.124  Sum_probs=31.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|+|+|++|.+|..+++.+...|.   .|++++|++
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~---~V~~~~~~~  180 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGC---KVVGAAGSD  180 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            478999999999999999999999987   788888753

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.15  E-value=0.00063  Score=47.87  Aligned_cols=35  Identities=23%  Similarity=0.381  Sum_probs=29.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++++|+|+| +|++|+++++.|++.|.   .|++.+|+.
T Consensus         2 ~~k~VlViG-aG~iG~~ia~~L~~~G~---~V~v~~R~~   36 (450)
T 1ff9_A            2 ATKSVLMLG-SGFVTRPTLDVLTDSGI---KVTVACRTL   36 (450)
T ss_dssp             CCCEEEEEC-CSTTHHHHHHHHHTTTC---EEEEEESSH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCcC---EEEEEECCH
Confidence            357899997 89999999999999876   788888853

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.15  E-value=0.0016  Score=44.04  Aligned_cols=38  Identities=13%  Similarity=0.165  Sum_probs=32.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++|+|+ |.+|+.++..|.+.|.  ..|+++.|.++
T Consensus       152 l~gk~~lVlGa-GG~g~aia~~L~~~Ga--~~V~i~nR~~~  189 (315)
T 3tnl_A          152 IIGKKMTICGA-GGAATAICIQAALDGV--KEISIFNRKDD  189 (315)
T ss_dssp             CTTSEEEEECC-SHHHHHHHHHHHHTTC--SEEEEEECSST
T ss_pred             ccCCEEEEECC-ChHHHHHHHHHHHCCC--CEEEEEECCCc
Confidence            56899999997 7899999999999964  47888899743

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.14  E-value=0.00042  Score=46.05  Aligned_cols=36  Identities=6%  Similarity=0.035  Sum_probs=31.9

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|+|+||+|.+|..+++.+...|.   .|++++|++
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~---~V~~~~~~~  175 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGA---KLIGTVGTA  175 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTC---EEEEEESSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            478999999999999999999999987   788888753

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=97.12  E-value=0.0009  Score=44.71  Aligned_cols=34  Identities=15%  Similarity=0.119  Sum_probs=28.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ++|+||||+|++|..++..|+..+. ..++..+++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~-~~el~L~Di   34 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDI   34 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEcC
Confidence            4799999999999999999988753 346777776

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.08  E-value=0.0014  Score=54.10  Aligned_cols=39  Identities=26%  Similarity=0.275  Sum_probs=33.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      .+++++||||+|.||.++++.|+++|..  .|+.++|+...
T Consensus      1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~--~vvl~~R~~~~ 1921 (2512)
T 2vz8_A         1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQ--KLVLTSRSGIR 1921 (2512)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCC--EEEEECSSCCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCC--EEEEEeCCCcc
Confidence            5789999999999999999999999862  47778887554

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.06  E-value=0.0012  Score=43.26  Aligned_cols=36  Identities=14%  Similarity=0.121  Sum_probs=31.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++|+|+ |.+|+.++..|++.|.   .|++.+|+.
T Consensus       117 l~~k~vlViGa-Gg~g~a~a~~L~~~G~---~V~v~~R~~  152 (271)
T 1nyt_A          117 RPGLRILLIGA-GGASRGVLLPLLSLDC---AVTITNRTV  152 (271)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSH
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHcCC---EEEEEECCH
Confidence            46899999998 7799999999999985   888888864

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=97.04  E-value=0.00049  Score=45.92  Aligned_cols=36  Identities=14%  Similarity=0.181  Sum_probs=31.9

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|+|+||+|.+|..+++.+...|.   .|++++|++
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~---~Vi~~~~~~  180 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGA---TVIGTVSTE  180 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            478999999999999999999999987   788888764

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=96.98  E-value=0.00078  Score=45.46  Aligned_cols=36  Identities=8%  Similarity=0.063  Sum_probs=31.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|+|+||+|.+|..++..+...|.   .|++++|++
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga---~Vi~~~~~~  197 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGA---IPLVTAGSQ  197 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            478999999999999999999999977   788888754

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.91  E-value=0.0016  Score=43.65  Aligned_cols=37  Identities=14%  Similarity=0.238  Sum_probs=32.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+.+|+|+|++|.+|...+..+...|.   +|+++++++.
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga---~Vi~~~~~~~  195 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGA---KVIAVVNRTA  195 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence            478999999999999999999998877   7888887554

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.89  E-value=0.0016  Score=42.86  Aligned_cols=38  Identities=13%  Similarity=0.137  Sum_probs=32.6

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      .+.+|+|+|++|.+|...+..+...|.   .|+++++++..
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga---~Vi~~~~~~~~  162 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGL---RVLAAASRPEK  162 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTC---EEEEEESSGGG
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            478999999999999999999888876   78888886543

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=96.89  E-value=0.0018  Score=43.21  Aligned_cols=36  Identities=14%  Similarity=0.171  Sum_probs=31.5

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|+|+|++|.+|..+++.+...|.   .|++++|++
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~---~V~~~~~~~  190 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGC---YVVGSAGSK  190 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            478999999999999999999998876   788888753

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=96.88  E-value=0.0023  Score=43.19  Aligned_cols=36  Identities=19%  Similarity=0.135  Sum_probs=31.6

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|+|+|++|.+|..+++.+...|.   .|++++|++
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga---~Vi~~~~~~  205 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGL---KILGTAGTE  205 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCh
Confidence            478999999999999999999999977   788888753

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.85  E-value=0.002  Score=42.89  Aligned_cols=36  Identities=14%  Similarity=0.153  Sum_probs=31.6

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|+|+|++|.+|...++.+...|.   +|++++|++
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~~  184 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGC---RVVGIAGGA  184 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            478999999999999999999998877   888888753

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.83  E-value=0.0037  Score=42.23  Aligned_cols=38  Identities=16%  Similarity=0.205  Sum_probs=32.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++|+|+ |..|+.++..|.+.|.  ..|++..|...
T Consensus       146 l~gk~~lVlGA-GGaaraia~~L~~~G~--~~v~v~nRt~~  183 (312)
T 3t4e_A          146 MRGKTMVLLGA-GGAATAIGAQAAIEGI--KEIKLFNRKDD  183 (312)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--SEEEEEECSST
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHHHcCC--CEEEEEECCCc
Confidence            46899999997 8899999999999864  47888999744

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.81  E-value=0.003  Score=42.21  Aligned_cols=38  Identities=11%  Similarity=0.114  Sum_probs=32.9

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      .+.+|+|+|++|.+|...+..+...|.   +|+++++++..
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~~~~  181 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNF---RLIAVTRNNKH  181 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTC---EEEEEESSSTT
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCC---EEEEEeCCHHH
Confidence            478999999999999999999988877   78888886553

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=96.80  E-value=0.0028  Score=43.15  Aligned_cols=34  Identities=32%  Similarity=0.333  Sum_probs=27.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      ++|+|.||+|++|+.+++.|.++++...+++.+.
T Consensus         7 ~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~   40 (340)
T 2hjs_A            7 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLA   40 (340)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEE
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEe
Confidence            5799999999999999999987765544555554

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.78  E-value=0.0014  Score=44.15  Aligned_cols=36  Identities=19%  Similarity=0.317  Sum_probs=31.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+|+|+||+|.+|...+..+...|.   +|+++++++
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga---~Vi~~~~~~  202 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGA---EVYATAGST  202 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            478999999999999999999999977   788888754

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.77  E-value=0.0013  Score=44.07  Aligned_cols=36  Identities=6%  Similarity=-0.037  Sum_probs=31.5

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|+|+|++|.+|...++.+...|.   .|+++++++
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~---~Vi~~~~~~  201 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGA---RVIATAGSE  201 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            478999999999999999999998877   788888753

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.75  E-value=0.0034  Score=43.02  Aligned_cols=35  Identities=20%  Similarity=0.435  Sum_probs=27.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +..+|.|.||+|++|+.+++.|.+. +.+ +++.+.+
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~-p~~-elvai~~   49 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANH-PHF-QVTLMTA   49 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTC-SSE-EEEEEBC
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcC-CCc-EEEEEeC
Confidence            3468999999999999999999887 445 4555544

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.74  E-value=0.0016  Score=43.37  Aligned_cols=36  Identities=6%  Similarity=0.044  Sum_probs=31.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+|+|+||+|.+|...+..+...|.   +|+++++++
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~~  175 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGA---KLIGTVSSP  175 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTC---EEEEEESSH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            478999999999999999999999987   788888754

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.73  E-value=0.0015  Score=41.05  Aligned_cols=33  Identities=15%  Similarity=0.282  Sum_probs=28.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|+|+|+ |.+|+++++.|.+.|+   .|.++++++
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~---~v~vid~~~   33 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKY---GVVIINKDR   33 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            46899996 9999999999999987   788888754

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=96.72  E-value=0.0045  Score=41.55  Aligned_cols=36  Identities=25%  Similarity=0.210  Sum_probs=30.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|.|+||+|++|..++..|+..+. +.+|.++++++
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~-~~ev~L~Di~~   36 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIAH   36 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESSS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC-CcEEEEEeCCc
Confidence            4799999999999999999888762 44899998865

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.66  E-value=0.0019  Score=45.79  Aligned_cols=38  Identities=21%  Similarity=0.396  Sum_probs=29.5

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++++|+|+|+ |++|+.++..|++.+ .. .|++.+|+.
T Consensus        20 ~l~~k~VlIiGA-GgiG~aia~~L~~~~-g~-~V~v~~R~~   57 (467)
T 2axq_A           20 RHMGKNVLLLGS-GFVAQPVIDTLAAND-DI-NVTVACRTL   57 (467)
T ss_dssp             ---CEEEEEECC-STTHHHHHHHHHTST-TE-EEEEEESSH
T ss_pred             CCCCCEEEEECC-hHHHHHHHHHHHhCC-CC-eEEEEECCH
Confidence            366789999997 999999999999883 22 788888863

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.65  E-value=0.0015  Score=43.52  Aligned_cols=36  Identities=14%  Similarity=0.160  Sum_probs=31.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+|+|+||+|.+|...+..+...|.   +|+++++++
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~~  183 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGA---HTIAVASTD  183 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            578999999999999999999988877   788888753

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.65  E-value=0.0027  Score=41.67  Aligned_cols=36  Identities=31%  Similarity=0.315  Sum_probs=31.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++|+|+ |.+|+.++..|++.|.   .|++.+|+.
T Consensus       117 ~~~~~vlvlGa-Gg~g~a~a~~L~~~G~---~v~v~~R~~  152 (272)
T 1p77_A          117 RPNQHVLILGA-GGATKGVLLPLLQAQQ---NIVLANRTF  152 (272)
T ss_dssp             CTTCEEEEECC-SHHHHTTHHHHHHTTC---EEEEEESSH
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            46889999998 7799999999999985   888888864

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.62  E-value=0.0034  Score=42.90  Aligned_cols=39  Identities=13%  Similarity=0.241  Sum_probs=32.3

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++++++|.|+|++|++|+.++..++..|. ..+|.+++..
T Consensus         5 ~~~~~KV~ViGaaG~VG~~~a~~l~~~g~-~~evvLiDi~   43 (343)
T 3fi9_A            5 YLTEEKLTIVGAAGMIGSNMAQTAAMMRL-TPNLCLYDPF   43 (343)
T ss_dssp             CSCSSEEEEETTTSHHHHHHHHHHHHTTC-CSCEEEECSC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhcCC-CCEEEEEeCC
Confidence            45678999999999999999999998873 3378888874

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=96.60  E-value=0.0021  Score=45.85  Aligned_cols=36  Identities=22%  Similarity=0.276  Sum_probs=27.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++|||| |.+|++++..|++.|.   .|++..|..
T Consensus       362 l~~k~vlV~Ga-GGig~aia~~L~~~G~---~V~i~~R~~  397 (523)
T 2o7s_A          362 LASKTVVVIGA-GGAGKALAYGAKEKGA---KVVIANRTY  397 (523)
T ss_dssp             ----CEEEECC-SHHHHHHHHHHHHHCC----CEEEESSH
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            56789999999 6999999999999986   678888853

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=96.58  E-value=0.0067  Score=42.48  Aligned_cols=37  Identities=14%  Similarity=-0.053  Sum_probs=30.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHH-HhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLL-RSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~-~~g~~~~~V~~l~r~~   63 (82)
                      ..+|++|||||+..+|.+....|. +.|.   .++++.+..
T Consensus        48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA---~vi~v~~~~   85 (401)
T 4ggo_A           48 KAPKNVLVLGCSNGYGLASRITAAFGYGA---ATIGVSFEK   85 (401)
T ss_dssp             CCCCEEEEESCSSHHHHHHHHHHHHHHCC---EEEEEECCC
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhhCCC---CEEEEecCC
Confidence            457999999999999999998887 5666   677777654

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=96.57  E-value=0.0016  Score=44.29  Aligned_cols=36  Identities=22%  Similarity=0.237  Sum_probs=28.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcce-----EEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKN-----IYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~-----V~~l~r~~   63 (82)
                      ++|+||||+|++|++++..|+..+. +.+     ++.+++.+
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~-~~e~~~~~l~L~Di~~   44 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSV-FGKDQPIILVLLDITP   44 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTT-TCTTCCEEEEEECCGG
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC-ccccCCCEEEEEeCCC
Confidence            5899999999999999999987752 223     77777643

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=96.57  E-value=0.0053  Score=42.36  Aligned_cols=34  Identities=32%  Similarity=0.396  Sum_probs=27.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      .+|.|.||||++|..+++.|.+.+....++..+.
T Consensus         3 ~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~a   36 (366)
T 3pwk_A            3 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLA   36 (366)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEE
T ss_pred             cEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEE
Confidence            5899999999999999998888754444555554

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.56  E-value=0.0031  Score=42.30  Aligned_cols=36  Identities=17%  Similarity=0.205  Sum_probs=31.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRS-CPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~-g~~~~~V~~l~r~~   63 (82)
                      .+++|+|+|++|.+|..+++.+... |.   .|+++++++
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga---~Vi~~~~~~  206 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGA---TIIGVDVRE  206 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCC---EEEEEESSH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCC---eEEEEcCCH
Confidence            5789999999999999999999988 87   788888754

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.53  E-value=0.0052  Score=40.82  Aligned_cols=38  Identities=16%  Similarity=0.144  Sum_probs=32.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++|+|+ |.+|+.++..|.+.|.  ..|++++|+..
T Consensus       125 l~~k~vlVlGa-GG~g~aia~~L~~~G~--~~v~i~~R~~~  162 (283)
T 3jyo_A          125 AKLDSVVQVGA-GGVGNAVAYALVTHGV--QKLQVADLDTS  162 (283)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHHHHTTC--SEEEEECSSHH
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCC--CEEEEEECCHH
Confidence            56899999998 8899999999999964  46888888644

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.53  E-value=0.0016  Score=44.12  Aligned_cols=36  Identities=14%  Similarity=0.170  Sum_probs=31.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+|+|+||+|.+|...+..+...|.   .|+++++++
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga---~Vi~~~~~~  198 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKC---HVIGTCSSD  198 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC---EEEEEECCH
Confidence            478999999999999999999988876   788888753

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.52  E-value=0.0035  Score=42.35  Aligned_cols=34  Identities=21%  Similarity=0.318  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++|+|+|+ |.+|...+..+...|.   .|+++++++
T Consensus       181 g~~VlV~Ga-G~vG~~~~q~a~~~Ga---~Vi~~~~~~  214 (366)
T 2cdc_A          181 CRKVLVVGT-GPIGVLFTLLFRTYGL---EVWMANRRE  214 (366)
T ss_dssp             TCEEEEESC-HHHHHHHHHHHHHHTC---EEEEEESSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEeCCc
Confidence            899999999 9999999999999976   888888865

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.49  E-value=0.0064  Score=41.49  Aligned_cols=36  Identities=22%  Similarity=0.266  Sum_probs=32.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++|+|+|+ |.+|..+++.+...|.   .|++.+|++
T Consensus       164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga---~V~~~d~~~  199 (369)
T 2eez_A          164 VAPASVVILGG-GTVGTNAAKIALGMGA---QVTILDVNH  199 (369)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEECCH
Confidence            66899999999 9999999999999987   788888864

>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1

Probab=96.48  E-value=0.0048  Score=41.86  Aligned_cols=37  Identities=38%  Similarity=0.540  Sum_probs=31.3

Q ss_pred             ccCcE-EEEE-cCC-----------------ChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRS-VFVT-GGT-----------------GFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~-ilIt-G~t-----------------G~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.|++ |+|| |||                 |-.|.++++.++++|+   .|+.+.++.
T Consensus        34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga---~V~lv~g~~   89 (313)
T 1p9o_A           34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGY---GVLFLYRAR   89 (313)
T ss_dssp             HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTC---EEEEEEETT
T ss_pred             hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCC---EEEEEecCC
Confidence            67888 9999 557                 9999999999999999   777777753

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.46  E-value=0.0048  Score=42.65  Aligned_cols=36  Identities=25%  Similarity=0.333  Sum_probs=29.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCc-ceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGI-KNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~-~~V~~l~r~~~   64 (82)
                      ++|+|+|+ |++|+.+++.|++.+. + ..|.+.+|+..
T Consensus         2 ~kVlIiGa-GgiG~~ia~~L~~~g~-~~~~V~v~~r~~~   38 (405)
T 4ina_A            2 AKVLQIGA-GGVGGVVAHKMAMNRE-VFSHITLASRTLS   38 (405)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTCTT-TCCEEEEEESCHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC-CceEEEEEECCHH
Confidence            57999999 9999999999999862 2 37888888643

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=96.37  E-value=0.0044  Score=41.55  Aligned_cols=36  Identities=8%  Similarity=0.191  Sum_probs=31.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+|+|+||+|.+|...+..+...|.   +|+++++++
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga---~Vi~~~~~~  185 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGL---RVITTASRN  185 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEECCSH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            688999999999999999999888876   788887743

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=96.32  E-value=0.007  Score=40.55  Aligned_cols=36  Identities=11%  Similarity=0.174  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++|+||+|.+|...+..+...|.   +|+++++++.
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~Ga---~Vi~~~~~~~  200 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEEGF---RPIVTVRRDE  200 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHHTC---EEEEEESCGG
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            37999999999999999999999977   7888887544

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=96.31  E-value=0.0075  Score=39.99  Aligned_cols=35  Identities=29%  Similarity=0.345  Sum_probs=30.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +|+|+|++|.+|...+..+...|.   +|+++++++..
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~Ga---~vi~~~~~~~~  187 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRGY---DVVASTGNREA  187 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTC---CEEEEESSSST
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            899999999999999999888876   68888876543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.27  E-value=0.0069  Score=35.63  Aligned_cols=33  Identities=27%  Similarity=0.382  Sum_probs=28.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+|+|.|. |.+|..+++.|.+.|+   .|+++++++
T Consensus         8 ~~viIiG~-G~~G~~la~~L~~~g~---~v~vid~~~   40 (140)
T 3fwz_A            8 NHALLVGY-GRVGSLLGEKLLASDI---PLVVIETSR   40 (140)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC---CEEEEECCH
Confidence            46888886 9999999999999988   788888864

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=96.27  E-value=0.012  Score=40.22  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=26.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      +.+|.|.||||++|..+++.|.+......++..+.
T Consensus         1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~   35 (344)
T 3tz6_A            1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFA   35 (344)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEE
Confidence            45799999999999999998887743444555554

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=96.26  E-value=0.0086  Score=40.18  Aligned_cols=36  Identities=14%  Similarity=0.091  Sum_probs=30.2

Q ss_pred             cC--cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QN--RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~--~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+  ++|+|+|++|.+|..+++.+...|.  ..|++++++
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga--~~Vi~~~~~  195 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGC--SRVVGICGT  195 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTC--SEEEEEESC
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCC--CeEEEEeCC
Confidence            47  8999999999999999999988864  267777775

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.25  E-value=0.0084  Score=36.53  Aligned_cols=36  Identities=14%  Similarity=0.085  Sum_probs=30.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRS-CPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~-g~~~~~V~~l~r~~   63 (82)
                      ..+++|+|.| .|.+|..+++.|.+. |+   .|+++++++
T Consensus        37 ~~~~~v~IiG-~G~~G~~~a~~L~~~~g~---~V~vid~~~   73 (183)
T 3c85_A           37 PGHAQVLILG-MGRIGTGAYDELRARYGK---ISLGIEIRE   73 (183)
T ss_dssp             CTTCSEEEEC-CSHHHHHHHHHHHHHHCS---CEEEEESCH
T ss_pred             CCCCcEEEEC-CCHHHHHHHHHHHhccCC---eEEEEECCH
Confidence            3467899998 599999999999998 88   788888754

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.23  E-value=0.0087  Score=39.07  Aligned_cols=34  Identities=21%  Similarity=0.317  Sum_probs=29.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|.|.|++|.+|..++..|.+.|+   .|++.+|++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~---~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH---HLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS---EEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC---EEEEEECCH
Confidence            5899999999999999999999987   788887753

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=96.22  E-value=0.0036  Score=43.35  Aligned_cols=35  Identities=14%  Similarity=0.168  Sum_probs=30.1

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .|.+|+|+|++|.+|...+..+...|.   .|++++++
T Consensus       220 ~g~~VlV~GasG~iG~~a~qla~~~Ga---~vi~~~~~  254 (447)
T 4a0s_A          220 QGDIVLIWGASGGLGSYAIQFVKNGGG---IPVAVVSS  254 (447)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCC---EEEEEeCC
Confidence            478999999999999999999888877   77777764

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.20  E-value=0.0076  Score=40.86  Aligned_cols=33  Identities=18%  Similarity=0.340  Sum_probs=25.8

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +.|+|+|.|+ |++|+.+++.|.+. +   .|.+.+++
T Consensus        15 ~~mkilvlGa-G~vG~~~~~~L~~~-~---~v~~~~~~   47 (365)
T 3abi_A           15 RHMKVLILGA-GNIGRAIAWDLKDE-F---DVYIGDVN   47 (365)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTT-S---EEEEEESC
T ss_pred             CccEEEEECC-CHHHHHHHHHHhcC-C---CeEEEEcC
Confidence            3468999998 99999999988765 5   67776664

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=96.18  E-value=0.013  Score=39.74  Aligned_cols=34  Identities=26%  Similarity=0.426  Sum_probs=26.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      ++|.|.||+|++|+.+++.|.+++....+++.+.
T Consensus         4 ~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~   37 (336)
T 2r00_A            4 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLA   37 (336)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEE
Confidence            5799999999999999999988742222555555

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=96.18  E-value=0.0087  Score=37.78  Aligned_cols=34  Identities=21%  Similarity=0.225  Sum_probs=28.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++|.|.| +|.+|+.++..|.+.|+   .|++.+|++
T Consensus        28 ~~~I~iiG-~G~~G~~la~~l~~~g~---~V~~~~r~~   61 (215)
T 2vns_A           28 APKVGILG-SGDFARSLATRLVGSGF---KVVVGSRNP   61 (215)
T ss_dssp             -CCEEEEC-CSHHHHHHHHHHHHTTC---CEEEEESSH
T ss_pred             CCEEEEEc-cCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            46899998 89999999999999987   678888753

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.18  E-value=0.011  Score=39.32  Aligned_cols=37  Identities=19%  Similarity=0.330  Sum_probs=31.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++|+|+ |.+|+.++..|.+.|.  ..|++.+|+.
T Consensus       124 l~~k~vlvlGa-Gg~g~aia~~L~~~G~--~~v~v~~R~~  160 (281)
T 3o8q_A          124 LKGATILLIGA-GGAARGVLKPLLDQQP--ASITVTNRTF  160 (281)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTCC--SEEEEEESSH
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHhcCC--CeEEEEECCH
Confidence            46899999998 7899999999999863  3788888864

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.17  E-value=0.011  Score=38.99  Aligned_cols=37  Identities=22%  Similarity=0.323  Sum_probs=31.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++|+|+ |.+|+.++..|.+.|.  ..|++.+|..
T Consensus       118 l~~k~~lvlGa-Gg~~~aia~~L~~~G~--~~v~i~~R~~  154 (272)
T 3pwz_A          118 LRNRRVLLLGA-GGAVRGALLPFLQAGP--SELVIANRDM  154 (272)
T ss_dssp             CTTSEEEEECC-SHHHHHHHHHHHHTCC--SEEEEECSCH
T ss_pred             ccCCEEEEECc-cHHHHHHHHHHHHcCC--CEEEEEeCCH
Confidence            56899999998 7899999999999863  3788888864

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.17  E-value=0.013  Score=38.83  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +++++|.|+ |..|+.++..|.+.|.   +|++.+|....
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G~---~v~V~nRt~~k  153 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQGL---QVSVLNRSSRG  153 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSCTT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            789999997 8899999999999974   89999997654

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=96.11  E-value=0.0085  Score=41.05  Aligned_cols=33  Identities=27%  Similarity=0.399  Sum_probs=26.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCC----CcceEEEEe
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCP----GIKNIYLLM   60 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~----~~~~V~~l~   60 (82)
                      ++|+|.||||++|+.+++.|++.++    .+ +++.+.
T Consensus        10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~-ei~~l~   46 (352)
T 2nqt_A           10 TKVAVAGASGYAGGEILRLLLGHPAYADGRL-RIGALT   46 (352)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCHHHHTTSE-EEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCCCccE-EEEEEE
Confidence            5899999999999999999987730    23 555554

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=96.09  E-value=0.0089  Score=39.50  Aligned_cols=35  Identities=26%  Similarity=0.376  Sum_probs=30.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|.|.||.|.+|..++..|.+.|+   .|++.+|++.
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~---~V~~~~~~~~   56 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGY---PISILDREDW   56 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC---CEEEECTTCG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC---eEEEEECCcc
Confidence            5799999999999999999999987   6777787643

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.07  E-value=0.0086  Score=39.42  Aligned_cols=35  Identities=14%  Similarity=0.259  Sum_probs=29.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++|+|++ .+|+.++..|++.|    .|++.+|+.
T Consensus       126 l~~k~vlV~GaG-giG~aia~~L~~~G----~V~v~~r~~  160 (287)
T 1nvt_A          126 VKDKNIVIYGAG-GAARAVAFELAKDN----NIIIANRTV  160 (287)
T ss_dssp             CCSCEEEEECCS-HHHHHHHHHHTSSS----EEEEECSSH
T ss_pred             cCCCEEEEECch-HHHHHHHHHHHHCC----CEEEEECCH
Confidence            568999999986 89999999999996    677777754

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=96.04  E-value=0.0086  Score=39.67  Aligned_cols=35  Identities=26%  Similarity=0.263  Sum_probs=29.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +|+|+|++|.+|...+..+...|.   .|+++++++..
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga---~vi~~~~~~~~  186 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGY---TVEASTGKAAE  186 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTC---CEEEEESCTTC
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCC---EEEEEECCHHH
Confidence            799999999999999998888876   68888876543

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.03  E-value=0.012  Score=40.00  Aligned_cols=33  Identities=15%  Similarity=0.422  Sum_probs=26.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ++|.|.|++|++|+.+++.|.+. +.+ +++.+.+
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~-p~~-elv~v~s   37 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSH-PYL-EVKQVTS   37 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTC-TTE-EEEEEBC
T ss_pred             CEEEEECCCCHHHHHHHHHHHcC-CCc-EEEEEEC
Confidence            58999999999999999999876 344 5555554

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.03  E-value=0.02  Score=38.56  Aligned_cols=37  Identities=16%  Similarity=0.160  Sum_probs=31.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      .+.+|+|+|+ |.+|...+..+...|.   .|+++++++..
T Consensus       179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga---~Vi~~~~~~~~  215 (360)
T 1piw_A          179 PGKKVGIVGL-GGIGSMGTLISKAMGA---ETYVISRSSRK  215 (360)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC---EEEEEESSSTT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEcCCHHH
Confidence            4789999999 9999999998888876   78888886554

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=95.97  E-value=0.0089  Score=40.52  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=26.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL   59 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l   59 (82)
                      ++|.|.||+|++|+.+++.|.++++++..++.+
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~   33 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEARNFPLSELRLY   33 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEe
Confidence            368999999999999999998776655455544

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=95.93  E-value=0.0083  Score=40.19  Aligned_cols=32  Identities=22%  Similarity=0.483  Sum_probs=28.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL   59 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l   59 (82)
                      .+.+|+|+||+|.+|...+..+...|.   +|+++
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga---~Vi~~  181 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGA---RVFAT  181 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC---EEEEE
Confidence            478999999999999999999988877   67776

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=95.93  E-value=0.019  Score=39.13  Aligned_cols=34  Identities=29%  Similarity=0.543  Sum_probs=26.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE-eCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL-MRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l-~r~   62 (82)
                      .+|.|.|+||++|..+++.|.+. +++ ++..+ +++
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~-p~~-el~~l~s~~   39 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRH-PHM-NITALTVSA   39 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHC-TTE-EEEEEEEET
T ss_pred             eEEEEECCCChHHHHHHHHHHhC-CCC-cEEEEEecC
Confidence            47999999999999999988886 445 44444 443

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=95.89  E-value=0.0075  Score=40.05  Aligned_cols=38  Identities=13%  Similarity=0.239  Sum_probs=31.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++++|+|+ |.+|+.++..|.+.|.  ..|++.+|...
T Consensus       115 l~~k~vlvlGa-Gg~g~aia~~L~~~G~--~~v~v~~R~~~  152 (277)
T 3don_A          115 IEDAYILILGA-GGASKGIANELYKIVR--PTLTVANRTMS  152 (277)
T ss_dssp             GGGCCEEEECC-SHHHHHHHHHHHTTCC--SCCEEECSCGG
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCC--CEEEEEeCCHH
Confidence            56889999997 7889999999999965  36778888754

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.88  E-value=0.021  Score=35.87  Aligned_cols=36  Identities=14%  Similarity=0.233  Sum_probs=29.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +..++|.|.| .|.+|+.++..|.+.|+   +|+..+|++
T Consensus        17 ~~~~~I~iiG-~G~mG~~la~~l~~~g~---~V~~~~~~~   52 (209)
T 2raf_A           17 FQGMEITIFG-KGNMGQAIGHNFEIAGH---EVTYYGSKD   52 (209)
T ss_dssp             ---CEEEEEC-CSHHHHHHHHHHHHTTC---EEEEECTTC
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            4568899999 79999999999999987   788888764

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=95.88  E-value=0.012  Score=40.09  Aligned_cols=37  Identities=14%  Similarity=0.218  Sum_probs=32.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++|+|+|+ |.+|..++..+...|.   .|++++|++.
T Consensus       165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga---~V~v~dr~~~  201 (361)
T 1pjc_A          165 VKPGKVVILGG-GVVGTEAAKMAVGLGA---QVQIFDINVE  201 (361)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEeCCHH
Confidence            45689999999 9999999999999976   7888888643

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=95.87  E-value=0.013  Score=40.20  Aligned_cols=36  Identities=25%  Similarity=0.280  Sum_probs=26.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE-eCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL-MRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l-~r~~   63 (82)
                      ..+|.|.||||++|..+++.|.+. +.+ ++..+ +++.
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~h-P~~-el~~l~S~~s   43 (359)
T 4dpk_A            7 TLKAAILGATGLVGIEYVRMLSNH-PYI-KPAYLAGKGS   43 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTC-SSE-EEEEEEESTT
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhC-CCc-eEEEEECchh
Confidence            358999999999999999977665 444 44444 4433

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=95.87  E-value=0.013  Score=40.20  Aligned_cols=36  Identities=25%  Similarity=0.280  Sum_probs=26.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE-eCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL-MRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l-~r~~   63 (82)
                      ..+|.|.||||++|..+++.|.+. +.+ ++..+ +++.
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~h-P~~-el~~l~S~~s   43 (359)
T 4dpl_A            7 TLKAAILGATGLVGIEYVRMLSNH-PYI-KPAYLAGKGS   43 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTC-SSE-EEEEEEESTT
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhC-CCc-eEEEEECchh
Confidence            358999999999999999977665 444 44444 4433

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.85  E-value=0.022  Score=36.69  Aligned_cols=34  Identities=18%  Similarity=0.290  Sum_probs=29.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|.|.|+ |.+|..++..|.+.|+   .|+.++|++.
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~---~V~~~~r~~~   34 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCKQGH---EVQGWLRVPQ   34 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSCC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCC---CEEEEEcCcc
Confidence            46889987 9999999999999987   7888888654

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=95.85  E-value=0.013  Score=38.63  Aligned_cols=35  Identities=23%  Similarity=0.234  Sum_probs=29.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +|+|+|++|.+|...+..+...|.   +|+++++++..
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga---~Vi~~~~~~~~  183 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGY---QVAAVSGREST  183 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTC---CEEEEESCGGG
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCC---EEEEEeCCHHH
Confidence            399999999999999999888876   78888876543

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=95.84  E-value=0.011  Score=40.20  Aligned_cols=33  Identities=30%  Similarity=0.353  Sum_probs=26.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ++|.|.||+|++|+.+++.|.+. +.+ +|..+.+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~-p~~-ev~~i~~   41 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADH-PMF-ELTALAA   41 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTC-SSE-EEEEEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcC-CCC-EEEEEEc
Confidence            58999999999999999998876 334 5666654

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=95.83  E-value=0.0064  Score=35.84  Aligned_cols=36  Identities=8%  Similarity=0.168  Sum_probs=29.8

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+++|+|.|+ |.+|+.++..|.+.|.   .|++.+|++.
T Consensus        20 ~~~~v~iiG~-G~iG~~~a~~l~~~g~---~v~v~~r~~~   55 (144)
T 3oj0_A           20 GGNKILLVGN-GMLASEIAPYFSYPQY---KVTVAGRNID   55 (144)
T ss_dssp             CCCEEEEECC-SHHHHHHGGGCCTTTC---EEEEEESCHH
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEcCCHH
Confidence            3789999996 9999999999988865   5888888643

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=95.83  E-value=0.0087  Score=41.67  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=29.8

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .|.+|+|+|++|.+|...+..+...|.   .|++++++
T Consensus       228 ~g~~VlV~GasG~vG~~avqlak~~Ga---~vi~~~~~  262 (456)
T 3krt_A          228 QGDNVLIWGASGGLGSYATQFALAGGA---NPICVVSS  262 (456)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCC---eEEEEECC
Confidence            478999999999999999999888876   67777764

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=95.79  E-value=0.023  Score=34.06  Aligned_cols=42  Identities=10%  Similarity=0.131  Sum_probs=33.8

Q ss_pred             Chhhhcc-CcEEEEEcCC---ChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         19 PVSEFYQ-NRSVFVTGGT---GFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        19 ~~~~~~~-~~~ilItG~t---G~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+..+|. .++|.|.|++   |-+|..+++.|++.|+   .|+.+.+..
T Consensus         5 ~l~~ll~~p~~IavIGas~~~g~~G~~~~~~L~~~G~---~v~~vnp~~   50 (145)
T 2duw_A            5 DIAGILTSTRTIALVGASDKPDRPSYRVMKYLLDQGY---HVIPVSPKV   50 (145)
T ss_dssp             SHHHHHHHCCCEEEESCCSCTTSHHHHHHHHHHHHTC---CEEEECSSS
T ss_pred             HHHHHHhCCCEEEEECcCCCCCChHHHHHHHHHHCCC---EEEEeCCcc
Confidence            3555665 7899999998   8899999999999987   577776654

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=95.78  E-value=0.033  Score=37.36  Aligned_cols=37  Identities=19%  Similarity=0.100  Sum_probs=30.6

Q ss_pred             cC-cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QN-RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~-~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .| .+|+|+|++|.+|...+..+...|.   .|+++.++..
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga---~vi~~~~~~~  203 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLLNF---NSISVIRDRP  203 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTC---EEEEEECCCT
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHCCC---EEEEEecCcc
Confidence            47 8999999999999999998888876   6777776543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=95.76  E-value=0.019  Score=38.18  Aligned_cols=37  Identities=19%  Similarity=0.270  Sum_probs=31.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++|+|+ |.+|+.++..|.+.|.  ..|++..|..
T Consensus       139 l~~~~vlVlGa-Gg~g~aia~~L~~~G~--~~V~v~nR~~  175 (297)
T 2egg_A          139 LDGKRILVIGA-GGGARGIYFSLLSTAA--ERIDMANRTV  175 (297)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--SEEEEECSSH
T ss_pred             CCCCEEEEECc-HHHHHHHHHHHHHCCC--CEEEEEeCCH
Confidence            46889999998 7799999999999864  3788888864

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=95.75  E-value=0.024  Score=38.83  Aligned_cols=36  Identities=17%  Similarity=0.067  Sum_probs=32.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.+++|+|+|+ |-+|..+++.+...|.   .|++.+|++
T Consensus       166 l~g~~V~ViG~-G~iG~~~a~~a~~~Ga---~V~~~d~~~  201 (377)
T 2vhw_A          166 VEPADVVVIGA-GTAGYNAARIANGMGA---TVTVLDINI  201 (377)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEeCCH
Confidence            67899999998 9999999999999987   788888864

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=95.74  E-value=0.014  Score=40.14  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=26.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRS-CPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~-g~~~~~V~~l~r~   62 (82)
                      ++|.|.||+|++|+.+++.++++ ...+..++.+..+
T Consensus         2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~   38 (367)
T 1t4b_A            2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS   38 (367)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS
T ss_pred             cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeC
Confidence            47999999999999999955554 2234466666553

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=95.73  E-value=0.021  Score=40.93  Aligned_cols=35  Identities=14%  Similarity=0.094  Sum_probs=30.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +.|++++|||+. .||..+++.|...|.   .|++.+++
T Consensus       263 L~GKtVvVtGaG-gIG~aiA~~Laa~GA---~Viv~D~~  297 (488)
T 3ond_A          263 IAGKVAVVAGYG-DVGKGCAAALKQAGA---RVIVTEID  297 (488)
T ss_dssp             CTTCEEEEECCS-HHHHHHHHHHHHTTC---EEEEECSC
T ss_pred             ccCCEEEEECCC-HHHHHHHHHHHHCCC---EEEEEcCC
Confidence            679999999986 899999999999987   78777764

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=95.73  E-value=0.017  Score=38.23  Aligned_cols=36  Identities=28%  Similarity=0.494  Sum_probs=28.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+|.|.|++|.+|+.+++.+.+. .++..|-+++|+.
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~-~~~eLv~~~d~~~   43 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAA-PDATLVGALDRTG   43 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHC-TTEEEEEEBCCTT
T ss_pred             cEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEEecC
Confidence            58999999999999999999877 4564555567753

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=95.67  E-value=0.026  Score=37.85  Aligned_cols=37  Identities=11%  Similarity=0.308  Sum_probs=32.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|++++|.|+++.+|+.++..|+..|.   .|+...|..
T Consensus       158 l~Gk~vvVvGrs~iVG~p~A~lL~~~gA---tVtv~h~~t  194 (285)
T 3p2o_A          158 LEGKDAVIIGASNIVGRPMATMLLNAGA---TVSVCHIKT  194 (285)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC---EEEEECTTC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCCc
Confidence            6799999999999999999999999987   777776643

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.60  E-value=0.01  Score=39.64  Aligned_cols=35  Identities=20%  Similarity=0.084  Sum_probs=29.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+|+|+|+ |.+|...+..+...|.   .|+++++++
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga---~Vi~~~~~~  198 (339)
T 1rjw_A          164 PGEWVAIYGI-GGLGHVAVQYAKAMGL---NVVAVDIGD  198 (339)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            4789999999 6799999999888876   788888753

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=95.58  E-value=0.026  Score=38.16  Aligned_cols=34  Identities=12%  Similarity=0.258  Sum_probs=28.8

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      .|.+|+|+||+|.+|...+..+...|.   .|++..+
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga---~Vi~~~~  216 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDA---HVTAVCS  216 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEeC
Confidence            578999999999999999998888876   6777664

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=95.54  E-value=0.019  Score=37.26  Aligned_cols=38  Identities=21%  Similarity=0.194  Sum_probs=31.4

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++++|+|.|+ |.+|+++++.|.+.|.  ..|..++++.
T Consensus        28 ~l~~~~VlVvG~-Gg~G~~va~~La~~Gv--~~i~lvD~d~   65 (249)
T 1jw9_B           28 ALKDSRVLIVGL-GGLGCAASQYLASAGV--GNLTLLDFDT   65 (249)
T ss_dssp             HHHHCEEEEECC-SHHHHHHHHHHHHHTC--SEEEEECCCB
T ss_pred             HHhCCeEEEEee-CHHHHHHHHHHHHcCC--CeEEEEcCCC
Confidence            467889999986 6789999999999964  4788888765

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=95.51  E-value=0.031  Score=37.61  Aligned_cols=36  Identities=22%  Similarity=0.145  Sum_probs=29.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRS-CPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~-g~~~~~V~~l~r~~   63 (82)
                      ++|.|+||+|.+|..++..|... +. ..+++.++..+
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~-~~el~L~Di~~   37 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPS-GSELSLYDIAP   37 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCT-TEEEEEECSST
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCC-CceEEEEecCC
Confidence            47999999999999999988776 32 34788888765

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=95.48  E-value=0.033  Score=38.58  Aligned_cols=32  Identities=28%  Similarity=0.382  Sum_probs=25.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL   59 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l   59 (82)
                      ..+|.|.||||++|..+++.|.+. +.+ ++..+
T Consensus        19 ~~kVaIvGAtG~vG~ell~lL~~h-p~~-el~~l   50 (381)
T 3hsk_A           19 VKKAGVLGATGSVGQRFILLLSKH-PEF-EIHAL   50 (381)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTC-SSE-EEEEE
T ss_pred             ccEEEEECCCChHHHHHHHHHHcC-CCc-eEEEe
Confidence            368999999999999999987776 333 55444

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.47  E-value=0.043  Score=37.66  Aligned_cols=33  Identities=30%  Similarity=0.376  Sum_probs=26.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      .+|.|.||||++|..+++.|.+. +.+ ++..+..
T Consensus        14 ~~V~IvGAtG~vG~ellrlL~~h-P~~-el~~l~S   46 (351)
T 1vkn_A           14 IRAGIIGATGYTGLELVRLLKNH-PEA-KITYLSS   46 (351)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHC-TTE-EEEEEEC
T ss_pred             eEEEEECCCCHHHHHHHHHHHcC-CCc-EEEEEeC
Confidence            57999999999999999999988 444 5555543

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=95.47  E-value=0.017  Score=36.52  Aligned_cols=35  Identities=17%  Similarity=0.224  Sum_probs=28.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEE-EeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYL-LMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~-l~r~~~   64 (82)
                      .++|.|.| +|.+|..++..|.+.|+   +|.. .+|++.
T Consensus        23 mmkI~IIG-~G~mG~~la~~l~~~g~---~V~~v~~r~~~   58 (220)
T 4huj_A           23 MTTYAIIG-AGAIGSALAERFTAAQI---PAIIANSRGPA   58 (220)
T ss_dssp             SCCEEEEE-CHHHHHHHHHHHHHTTC---CEEEECTTCGG
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCC---EEEEEECCCHH
Confidence            36899999 89999999999999987   5666 677544

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=95.46  E-value=0.041  Score=32.72  Aligned_cols=39  Identities=13%  Similarity=0.206  Sum_probs=30.1

Q ss_pred             hhccCcEEEEEcCC---ChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         22 EFYQNRSVFVTGGT---GFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        22 ~~~~~~~ilItG~t---G~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++.++|.|.|++   |-+|..+++.|++.|+   +|+.+.+..
T Consensus        10 ~l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~---~V~~vnp~~   51 (138)
T 1y81_A           10 NSKEFRKIALVGASKNPAKYGNIILKDLLSKGF---EVLPVNPNY   51 (138)
T ss_dssp             ----CCEEEEETCCSCTTSHHHHHHHHHHHTTC---EEEEECTTC
T ss_pred             cccCCCeEEEEeecCCCCCHHHHHHHHHHHCCC---EEEEeCCCC
Confidence            34677899999997   8899999999999987   678777653

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=95.45  E-value=0.037  Score=36.94  Aligned_cols=37  Identities=16%  Similarity=0.248  Sum_probs=32.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|++++|.|+++.+|+.++..|+..|.   .|+...+..
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gA---tVtv~~~~t  184 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNY---TVSVCHSKT  184 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTC---EEEEECTTC
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCC---eEEEEeCCc
Confidence            6899999999999999999999999987   777776643

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=95.42  E-value=0.012  Score=38.83  Aligned_cols=36  Identities=31%  Similarity=0.390  Sum_probs=26.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .++|+|+|++|.+|+.+++.+.+. .++..+-+++++
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~-~~~elva~~d~~   40 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALAL-EGVQLGAALERE   40 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHS-TTEECCCEECCT
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecC
Confidence            368999999999999999998765 334233344554

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.36  E-value=0.038  Score=36.91  Aligned_cols=37  Identities=22%  Similarity=0.283  Sum_probs=31.0

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      .|.+|+|.|+ |.+|...+..+...|.   +|+++++++..
T Consensus       176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga---~Vi~~~~~~~~  212 (348)
T 3two_A          176 KGTKVGVAGF-GGLGSMAVKYAVAMGA---EVSVFARNEHK  212 (348)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHTTC---EEEEECSSSTT
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCC---eEEEEeCCHHH
Confidence            5889999997 9999999988888876   78888876554

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=95.34  E-value=0.043  Score=35.16  Aligned_cols=38  Identities=21%  Similarity=0.369  Sum_probs=30.5

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+.+++|.|.| .|.+|..++..|.+.|+   .|+..+|++.
T Consensus        16 ~~~~~kIgiIG-~G~mG~alA~~L~~~G~---~V~~~~r~~~   53 (245)
T 3dtt_A           16 YFQGMKIAVLG-TGTVGRTMAGALADLGH---EVTIGTRDPK   53 (245)
T ss_dssp             ---CCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             ccCCCeEEEEC-CCHHHHHHHHHHHHCCC---EEEEEeCChh
Confidence            35678999995 99999999999999987   7888888644

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.32  E-value=0.05  Score=35.81  Aligned_cols=35  Identities=20%  Similarity=0.273  Sum_probs=29.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .|.+|+|+|+ |.+|...+..+...|.   +|++++ ++.
T Consensus       142 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga---~Vi~~~-~~~  176 (315)
T 3goh_A          142 KQREVLIVGF-GAVNNLLTQMLNNAGY---VVDLVS-ASL  176 (315)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTC---EEEEEC-SSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCC---EEEEEE-Chh
Confidence            4789999999 9999999998888876   788887 443

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=95.24  E-value=0.039  Score=36.71  Aligned_cols=37  Identities=24%  Similarity=0.406  Sum_probs=30.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++|.|+ |..|+.++..|.+.|.  ..|+++.|..
T Consensus       120 ~~~k~vlvlGa-GGaaraia~~L~~~G~--~~v~v~nRt~  156 (282)
T 3fbt_A          120 IKNNICVVLGS-GGAARAVLQYLKDNFA--KDIYVVTRNP  156 (282)
T ss_dssp             CTTSEEEEECS-STTHHHHHHHHHHTTC--SEEEEEESCH
T ss_pred             ccCCEEEEECC-cHHHHHHHHHHHHcCC--CEEEEEeCCH
Confidence            46899999997 6689999999999854  4788888864

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=95.24  E-value=0.049  Score=36.54  Aligned_cols=36  Identities=17%  Similarity=0.228  Sum_probs=31.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++|++++|.|+++.+|+.++..|+..|.   .|+...+.
T Consensus       159 l~Gk~vvVvGrs~iVG~plA~lL~~~gA---tVtv~hs~  194 (286)
T 4a5o_A          159 LYGMDAVVVGASNIVGRPMALELLLGGC---TVTVTHRF  194 (286)
T ss_dssp             CTTCEEEEECTTSTTHHHHHHHHHHTTC---EEEEECTT
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCC---eEEEEeCC
Confidence            6799999999999999999999999987   77777654

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=95.23  E-value=0.035  Score=37.45  Aligned_cols=36  Identities=11%  Similarity=0.284  Sum_probs=32.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++|++++|.|+++.+|+.++..|++.|.   .|+...|.
T Consensus       163 l~Gk~vvVIG~s~iVG~p~A~lL~~~gA---tVtv~~~~  198 (300)
T 4a26_A          163 MAGKRAVVLGRSNIVGAPVAALLMKENA---TVTIVHSG  198 (300)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC---EEEEECTT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCC
Confidence            6799999999999999999999999987   78877764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.20  E-value=0.048  Score=35.98  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=31.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.+++++|.|+ |-+|+.+++.|...|.   +|++.+|..
T Consensus       155 l~g~~v~IiG~-G~iG~~~a~~l~~~G~---~V~~~d~~~  190 (300)
T 2rir_A          155 IHGSQVAVLGL-GRTGMTIARTFAALGA---NVKVGARSS  190 (300)
T ss_dssp             STTSEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCCEEEEEcc-cHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            57899999996 9999999999999987   888888864

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=95.18  E-value=0.048  Score=36.55  Aligned_cols=36  Identities=19%  Similarity=0.241  Sum_probs=31.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++|++++|.|+++.+|+.++..|+..|.   .|+...|.
T Consensus       159 l~Gk~vvVIG~s~iVG~p~A~lL~~~gA---tVtv~hs~  194 (285)
T 3l07_A          159 TEGAYAVVVGASNVVGKPVSQLLLNAKA---TVTTCHRF  194 (285)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC---EEEEECTT
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCC---eEEEEeCC
Confidence            6799999999999999999999999977   67776654

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=95.15  E-value=0.045  Score=36.81  Aligned_cols=38  Identities=16%  Similarity=0.173  Sum_probs=32.3

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+.+++|.|.|. |.+|+.+++.|...|.   +|++.+|+..
T Consensus       152 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~---~V~~~d~~~~  189 (330)
T 2gcg_A          152 GLTQSTVGIIGL-GRIGQAIARRLKPFGV---QRFLYTGRQP  189 (330)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHGGGTC---CEEEEESSSC
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCC---EEEEECCCCc
Confidence            367899999986 9999999999999987   7888887654

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.13  E-value=0.027  Score=37.61  Aligned_cols=35  Identities=23%  Similarity=0.154  Sum_probs=30.0

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHh--CCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRS--CPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~--g~~~~~V~~l~r~~   63 (82)
                      .+.+|+|+|+ |.+|...+..+...  |.   .|+++++++
T Consensus       170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga---~Vi~~~~~~  206 (344)
T 2h6e_A          170 AEPVVIVNGI-GGLAVYTIQILKALMKNI---TIVGISRSK  206 (344)
T ss_dssp             SSCEEEEECC-SHHHHHHHHHHHHHCTTC---EEEEECSCH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHhcCCC---EEEEEeCCH
Confidence            6889999999 99999999988888  76   788888754

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=95.13  E-value=0.032  Score=38.54  Aligned_cols=34  Identities=18%  Similarity=0.189  Sum_probs=23.9

Q ss_pred             cEEEEEcCCChHHHHHHH-HHHHhCCCcceEEEEe
Q psy16528         27 RSVFVTGGTGFMGKVLVE-KLLRSCPGIKNIYLLM   60 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~-~l~~~g~~~~~V~~l~   60 (82)
                      ++|.|.||||+.|..+++ .|.+......++..++
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~s   35 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFS   35 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEe
Confidence            478999999999999999 5555421133555554

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=95.13  E-value=0.043  Score=35.87  Aligned_cols=36  Identities=22%  Similarity=0.476  Sum_probs=30.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++++|.|+ |.+|+.++..|.+.|.   .|++.+|+.
T Consensus       127 ~~~~~v~iiGa-G~~g~aia~~L~~~g~---~V~v~~r~~  162 (275)
T 2hk9_A          127 VKEKSILVLGA-GGASRAVIYALVKEGA---KVFLWNRTK  162 (275)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHHTC---EEEEECSSH
T ss_pred             cCCCEEEEECc-hHHHHHHHHHHHHcCC---EEEEEECCH
Confidence            46789999996 7899999999999975   788888863

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=95.12  E-value=0.036  Score=37.68  Aligned_cols=32  Identities=25%  Similarity=0.450  Sum_probs=26.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      .+|.|.||+|++|+.+++.|.+. +.+ ++..+.
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~-p~~-elvai~   36 (350)
T 2ep5_A            5 IKVSLLGSTGMVGQKMVKMLAKH-PYL-ELVKVS   36 (350)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTC-SSE-EEEEEE
T ss_pred             cEEEEECcCCHHHHHHHHHHHhC-CCc-EEEEEe
Confidence            57999999999999999998876 444 566664

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=95.10  E-value=0.1  Score=33.59  Aligned_cols=40  Identities=20%  Similarity=0.301  Sum_probs=32.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCcc
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQD   67 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~   67 (82)
                      +++++++|.|| |++|-.++..|.+.|.   +|+.+.|......
T Consensus       150 ~~~~~vvViGg-G~ig~e~A~~l~~~G~---~Vt~v~~~~~~~~  189 (314)
T 4a5l_A          150 FRNKVLMVVGG-GDAAMEEALHLTKYGS---KVIILHRRDAFRA  189 (314)
T ss_dssp             GTTSEEEEECS-SHHHHHHHHHHTTTSS---EEEEECSSSSCCS
T ss_pred             cCCCeEEEECC-ChHHHHHHHHHHHhCC---eeeeecccccccc
Confidence            46789988885 8999999999999987   7888887655433

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=95.05  E-value=0.1  Score=33.84  Aligned_cols=38  Identities=21%  Similarity=0.298  Sum_probs=31.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +.+++++|.|| |++|-.++..|.+.|.   +|..+.|.+..
T Consensus       143 ~~~k~vvViGg-G~ig~E~A~~l~~~g~---~Vtlv~~~~~~  180 (312)
T 4gcm_A          143 FKNKRLFVIGG-GDSAVEEGTFLTKFAD---KVTIVHRRDEL  180 (312)
T ss_dssp             GTTCEEEEECC-SHHHHHHHHHHTTTCS---EEEEECSSSSC
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhcCC---EEEEEeccccc
Confidence            56789999985 8999999999999877   78888876543

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=95.05  E-value=0.046  Score=37.86  Aligned_cols=34  Identities=18%  Similarity=0.172  Sum_probs=24.4

Q ss_pred             cEEEEEcCCChHHHHHHH-HHHHhCCCcceEEEEe
Q psy16528         27 RSVFVTGGTGFMGKVLVE-KLLRSCPGIKNIYLLM   60 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~-~l~~~g~~~~~V~~l~   60 (82)
                      .+|.|.||||++|..+++ .|.+......++..++
T Consensus         5 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~s   39 (377)
T 3uw3_A            5 MNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFS   39 (377)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEe
Confidence            589999999999999999 5555421133555554

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=95.04  E-value=0.045  Score=36.15  Aligned_cols=35  Identities=14%  Similarity=0.239  Sum_probs=29.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ..|.+|+|+||+|.+|...+..+...|.   +|+++.+
T Consensus       151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga---~vi~~~~  185 (321)
T 3tqh_A          151 KQGDVVLIHAGAGGVGHLAIQLAKQKGT---TVITTAS  185 (321)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEEC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCC---EEEEEec
Confidence            3578999999999999999999888876   6777664

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=95.03  E-value=0.08  Score=35.49  Aligned_cols=35  Identities=11%  Similarity=0.101  Sum_probs=28.9

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .|.+|+|.|++|.+|...+..+...|.   .++++.+.
T Consensus       167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga---~vi~~~~~  201 (357)
T 1zsy_A          167 PGDSVIQNASNSGVGQAVIQIAAALGL---RTINVVRD  201 (357)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTC---EEEEEECC
T ss_pred             CCCEEEEeCCcCHHHHHHHHHHHHcCC---EEEEEecC
Confidence            478999999999999999998888876   56666654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.01  E-value=0.051  Score=35.26  Aligned_cols=33  Identities=21%  Similarity=0.245  Sum_probs=28.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|.|.|+ |.+|..++..|.+.|+   .|+.++|++
T Consensus         4 m~i~iiG~-G~~G~~~a~~l~~~g~---~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGA-GAMGSRLGIMLHQGGN---DVTLIDQWP   36 (316)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCC---cEEEEECCH
Confidence            57999986 9999999999999987   788888854

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.98  E-value=0.025  Score=37.80  Aligned_cols=36  Identities=19%  Similarity=0.244  Sum_probs=29.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+|+|+|+ |.+|...++.+...|.  .+|+++++++
T Consensus       167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga--~~Vi~~~~~~  202 (348)
T 2d8a_A          167 SGKSVLITGA-GPLGLLGIAVAKASGA--YPVIVSEPSD  202 (348)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTC--CSEEEECSCH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEECCCH
Confidence            6789999999 9999999998888864  2577777753

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.96  E-value=0.055  Score=35.90  Aligned_cols=33  Identities=15%  Similarity=0.068  Sum_probs=28.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|.|.|+ |.+|..++..|.+.|+   .|..++|++
T Consensus         5 mki~iiG~-G~~G~~~a~~L~~~g~---~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGL-GNGGHAFAAYLALKGQ---SVLAWDIDA   37 (359)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC---EEEEEeCCH
Confidence            68999986 9999999999999987   788888753

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=94.96  E-value=0.05  Score=35.27  Aligned_cols=38  Identities=16%  Similarity=0.136  Sum_probs=30.6

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ..+++++|+|.|+.| +|+++++.|.+.|.  ..+..++++
T Consensus        24 ~~l~~~~VlvvG~Gg-lG~~va~~La~~Gv--g~i~lvD~d   61 (251)
T 1zud_1           24 QKLLDSQVLIIGLGG-LGTPAALYLAGAGV--GTLVLADDD   61 (251)
T ss_dssp             HHHHTCEEEEECCST-THHHHHHHHHHTTC--SEEEEECCC
T ss_pred             HHHhcCcEEEEccCH-HHHHHHHHHHHcCC--CeEEEEeCC
Confidence            346789999999855 89999999999964  477777654

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=94.94  E-value=0.06  Score=36.24  Aligned_cols=37  Identities=27%  Similarity=0.406  Sum_probs=29.1

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +||+|+|.|| |+-|...+.+|.+.+.+. +|..+.+++
T Consensus         1 aGKkVvIIG~-G~AG~~aA~~L~~~~~~~-~Vtlie~~~   37 (401)
T 3vrd_B            1 AGRKVVVVGG-GTGGATAAKYIKLADPSI-EVTLIEPNE   37 (401)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHHCTTS-EEEEECSCS
T ss_pred             CcCEEEEECC-cHHHHHHHHHHHhcCcCC-eEEEEeCCC
Confidence            4799999987 888999999998887554 677777654

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.92  E-value=0.036  Score=37.37  Aligned_cols=35  Identities=14%  Similarity=0.149  Sum_probs=29.6

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .|.+|+|+| +|.+|...+..+...|.   +|+++++++
T Consensus       189 ~g~~VlV~G-~G~vG~~a~qla~~~Ga---~Vi~~~~~~  223 (363)
T 3uog_A          189 AGDRVVVQG-TGGVALFGLQIAKATGA---EVIVTSSSR  223 (363)
T ss_dssp             TTCEEEEES-SBHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCC---EEEEEecCc
Confidence            478999999 89999999998888876   788888753

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=94.90  E-value=0.04  Score=35.36  Aligned_cols=36  Identities=17%  Similarity=0.300  Sum_probs=28.6

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|.|.|+ |.+|+.++..|.+.|++  .|.+.+|++
T Consensus         9 ~~m~i~iiG~-G~mG~~~a~~l~~~g~~--~v~~~~~~~   44 (266)
T 3d1l_A            9 EDTPIVLIGA-GNLATNLAKALYRKGFR--IVQVYSRTE   44 (266)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHHHTCC--EEEEECSSH
T ss_pred             CCCeEEEEcC-CHHHHHHHHHHHHCCCe--EEEEEeCCH
Confidence            3468999986 99999999999999762  377777753

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=94.89  E-value=0.066  Score=35.21  Aligned_cols=36  Identities=19%  Similarity=0.220  Sum_probs=31.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.+++++|.| .|-+|+.+++.|...|.   +|++.+|..
T Consensus       153 l~g~~v~IiG-~G~iG~~~a~~l~~~G~---~V~~~dr~~  188 (293)
T 3d4o_A          153 IHGANVAVLG-LGRVGMSVARKFAALGA---KVKVGARES  188 (293)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCCEEEEEe-eCHHHHHHHHHHHhCCC---EEEEEECCH
Confidence            5789999999 58999999999999976   788888864

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=94.87  E-value=0.07  Score=35.99  Aligned_cols=38  Identities=13%  Similarity=0.241  Sum_probs=32.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +.+++|.|.| .|.+|+.+++.|...|.   .|++.+|+...
T Consensus       148 l~g~~vgIIG-~G~iG~~iA~~l~~~G~---~V~~~d~~~~~  185 (334)
T 2dbq_A          148 VYGKTIGIIG-LGRIGQAIAKRAKGFNM---RILYYSRTRKE  185 (334)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEECSSCCH
T ss_pred             CCCCEEEEEc-cCHHHHHHHHHHHhCCC---EEEEECCCcch
Confidence            6789999998 59999999999999987   78888886543

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=94.86  E-value=0.055  Score=36.51  Aligned_cols=36  Identities=14%  Similarity=0.160  Sum_probs=30.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+.+|+|+|+ |.+|...+..+...|.   .|+++++++.
T Consensus       187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga---~Vi~~~~~~~  222 (366)
T 1yqd_A          187 PGKHIGIVGL-GGLGHVAVKFAKAFGS---KVTVISTSPS  222 (366)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCGG
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            6789999996 9999999999888876   7888887543

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=94.84  E-value=0.07  Score=31.79  Aligned_cols=40  Identities=13%  Similarity=0.268  Sum_probs=32.6

Q ss_pred             hhhhcc-CcEEEEEcCC---ChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         20 VSEFYQ-NRSVFVTGGT---GFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        20 ~~~~~~-~~~ilItG~t---G~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +..+|+ .++|+|.|++   |.+|..+++.|.+.|+   .|+.+...
T Consensus        15 l~~ll~~p~~iaVVGas~~~g~~G~~~~~~l~~~G~---~v~~Vnp~   58 (144)
T 2d59_A           15 IREILTRYKKIALVGASPKPERDANIVMKYLLEHGY---DVYPVNPK   58 (144)
T ss_dssp             HHHHHHHCCEEEEETCCSCTTSHHHHHHHHHHHTTC---EEEEECTT
T ss_pred             HHHHHcCCCEEEEEccCCCCCchHHHHHHHHHHCCC---EEEEECCC
Confidence            556675 8999999998   8999999999999987   57766543

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=94.79  E-value=0.06  Score=32.00  Aligned_cols=40  Identities=10%  Similarity=0.105  Sum_probs=32.7

Q ss_pred             hhhhc-cCcEEEEEcCC---ChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         20 VSEFY-QNRSVFVTGGT---GFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        20 ~~~~~-~~~~ilItG~t---G~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +..+| +.++|+|.|++   |-+|..+++.|.+.|+   .|+.+...
T Consensus         6 l~~ll~~p~~vaVvGas~~~g~~G~~~~~~l~~~G~---~v~~vnp~   49 (140)
T 1iuk_A            6 LRAYLSQAKTIAVLGAHKDPSRPAHYVPRYLREQGY---RVLPVNPR   49 (140)
T ss_dssp             HHHHHHHCCEEEEETCCSSTTSHHHHHHHHHHHTTC---EEEEECGG
T ss_pred             HHHHHcCCCEEEEECCCCCCCChHHHHHHHHHHCCC---EEEEeCCC
Confidence            44567 67899999998   8899999999999987   67776654

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=94.78  E-value=0.021  Score=38.56  Aligned_cols=36  Identities=14%  Similarity=0.265  Sum_probs=28.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHH-hCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLR-SCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~-~g~~~~~V~~l~r~~   63 (82)
                      .+.+|+|+||+|.+|...+..+.. .|.   .|+++++++
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~---~Vi~~~~~~  207 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDL---TVIATASRP  207 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCS---EEEEECSSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCC---EEEEEeCCH
Confidence            577999999999999988877665 355   788887753

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.76  E-value=0.069  Score=36.16  Aligned_cols=37  Identities=14%  Similarity=0.125  Sum_probs=30.1

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      .|.+|+|+|+ |.+|...+..+...|.   .|+++++++..
T Consensus       194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga---~Vi~~~~~~~~  230 (369)
T 1uuf_A          194 PGKKVGVVGI-GGLGHMGIKLAHAMGA---HVVAFTTSEAK  230 (369)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESSGGG
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            4789999998 7899999988888876   68888876543

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=94.75  E-value=0.068  Score=36.78  Aligned_cols=36  Identities=22%  Similarity=0.170  Sum_probs=30.2

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .++|++|+|.|. |-+|.++++.|.+.|.   +|++.+++
T Consensus       170 ~L~GktV~V~G~-G~VG~~~A~~L~~~Ga---kVvv~D~~  205 (364)
T 1leh_A          170 SLEGLAVSVQGL-GNVAKALCKKLNTEGA---KLVVTDVN  205 (364)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSC
T ss_pred             CCCcCEEEEECc-hHHHHHHHHHHHHCCC---EEEEEcCC
Confidence            377899999987 8899999999999987   67766653

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.72  E-value=0.048  Score=37.18  Aligned_cols=40  Identities=23%  Similarity=0.240  Sum_probs=32.1

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ...+++++|+|.|+ |.+|+.++..|.+.|.  ..+..++++.
T Consensus       113 q~~L~~~~VlvvG~-GglGs~va~~La~aGv--g~i~lvD~D~  152 (353)
T 3h5n_A          113 QDKLKNAKVVILGC-GGIGNHVSVILATSGI--GEIILIDNDQ  152 (353)
T ss_dssp             HHHHHTCEEEEECC-SHHHHHHHHHHHHHTC--SEEEEEECCB
T ss_pred             HHHHhCCeEEEECC-CHHHHHHHHHHHhCCC--CeEEEECCCc
Confidence            34567899999987 6689999999999964  5788888753

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=94.68  E-value=0.071  Score=36.76  Aligned_cols=37  Identities=24%  Similarity=0.466  Sum_probs=31.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.+++|+|.|+ |.+|..++..|...|.  ..|++.+|..
T Consensus       165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~--~~V~v~~r~~  201 (404)
T 1gpj_A          165 LHDKTVLVVGA-GEMGKTVAKSLVDRGV--RAVLVANRTY  201 (404)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHHCC--SEEEEECSSH
T ss_pred             ccCCEEEEECh-HHHHHHHHHHHHHCCC--CEEEEEeCCH
Confidence            57899999998 9999999999999864  4788888864

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=94.67  E-value=0.061  Score=36.35  Aligned_cols=34  Identities=21%  Similarity=0.043  Sum_probs=28.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      ..+.+|+|.|++|.+|...+..+...|.   +|+++.
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga---~Vi~~~  196 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGY---IPIATC  196 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCC---EEEEEe
Confidence            3578999999999999999999888876   666665

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=94.65  E-value=0.078  Score=34.49  Aligned_cols=35  Identities=17%  Similarity=0.337  Sum_probs=29.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ++|.|.| .|.+|..++..|.+.|+   .|++.+|++..
T Consensus         2 ~~i~iIG-~G~mG~~~a~~l~~~G~---~V~~~dr~~~~   36 (287)
T 3pef_A            2 QKFGFIG-LGIMGSAMAKNLVKAGC---SVTIWNRSPEK   36 (287)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTC---EEEEECSSGGG
T ss_pred             CEEEEEe-ecHHHHHHHHHHHHCCC---eEEEEcCCHHH
Confidence            5788887 59999999999999987   88888887543

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=94.61  E-value=0.076  Score=34.22  Aligned_cols=33  Identities=24%  Similarity=0.315  Sum_probs=28.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|.|.| .|.+|..++..|.+.|+   .|++.+|++
T Consensus         1 m~i~iiG-~G~~G~~~a~~l~~~g~---~V~~~~~~~   33 (279)
T 2f1k_A            1 MKIGVVG-LGLIGASLAGDLRRRGH---YLIGVSRQQ   33 (279)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CEEEEEc-CcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            4688998 79999999999999987   788887753

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.61  E-value=0.038  Score=36.96  Aligned_cols=35  Identities=23%  Similarity=0.184  Sum_probs=28.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+|+|+|+ |.+|...+..+...|.   .|+++++++
T Consensus       168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga---~Vi~~~~~~  202 (352)
T 1e3j_A          168 LGTTVLVIGA-GPIGLVSVLAAKAYGA---FVVCTARSP  202 (352)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCC---EEEEEcCCH
Confidence            5789999997 8999999998888876   577777653

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=94.59  E-value=0.037  Score=37.20  Aligned_cols=35  Identities=20%  Similarity=0.178  Sum_probs=29.5

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRS-CPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~-g~~~~~V~~l~r~~   63 (82)
                      .+.+|+|+|+ |.+|...+..+... |.   +|+++++++
T Consensus       186 ~g~~VlV~Ga-G~vG~~avqlak~~~Ga---~Vi~~~~~~  221 (359)
T 1h2b_A          186 PGAYVAIVGV-GGLGHIAVQLLKVMTPA---TVIALDVKE  221 (359)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCC---EEEEEESSH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC---eEEEEeCCH
Confidence            4789999999 89999999888888 76   788888753

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=94.57  E-value=0.14  Score=36.38  Aligned_cols=34  Identities=29%  Similarity=0.454  Sum_probs=29.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|.|.|+ |.+|..|+..|++.|+   .|++.++++.
T Consensus        55 ~kVaVIGa-G~MG~~IA~~la~aG~---~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGG-GTMGKAMAICFGLAGI---ETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSCHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC---eEEEEECcHH
Confidence            68999887 8999999999999988   8999988755

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=94.57  E-value=0.049  Score=36.54  Aligned_cols=35  Identities=29%  Similarity=0.324  Sum_probs=28.0

Q ss_pred             cEEEEEcCCChHHHHH-HHHH-HHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVL-VEKL-LRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i-~~~l-~~~g~~~~~V~~l~r~~~   64 (82)
                      .+|+|+|+ |.+|... +..+ ...|.  ..|+++++++.
T Consensus       174 ~~VlV~Ga-G~vG~~a~iqla~k~~Ga--~~Vi~~~~~~~  210 (357)
T 2b5w_A          174 SSAFVLGN-GSLGLLTLAMLKVDDKGY--ENLYCLGRRDR  210 (357)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHCTTCC--CEEEEEECCCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHHHcCC--cEEEEEeCCcc
Confidence            89999999 9999998 7776 66655  34888888654

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=94.46  E-value=0.064  Score=35.90  Aligned_cols=39  Identities=28%  Similarity=0.260  Sum_probs=31.1

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ..+++++|+|.|+ |.+|+.+++.|.+.|.  ..+..++.+.
T Consensus        32 ~kL~~~~VlVvGa-GGlGs~va~~La~aGV--G~i~lvD~D~   70 (292)
T 3h8v_A           32 EKIRTFAVAIVGV-GGVGSVTAEMLTRCGI--GKLLLFDYDK   70 (292)
T ss_dssp             CGGGGCEEEEECC-SHHHHHHHHHHHHHTC--SEEEEECCCB
T ss_pred             HHHhCCeEEEECc-CHHHHHHHHHHHHcCC--CEEEEECCCc
Confidence            3467889999987 5589999999999964  4788877754

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=94.45  E-value=0.1  Score=35.23  Aligned_cols=39  Identities=13%  Similarity=0.123  Sum_probs=31.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ++.++|.|+|+ |.+|..++..|+..+. . +|..+++++..
T Consensus         5 m~~~kI~viGa-G~vG~~~a~~l~~~~~-~-~v~L~Di~~~~   43 (324)
T 3gvi_A            5 MARNKIALIGS-GMIGGTLAHLAGLKEL-G-DVVLFDIAEGT   43 (324)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHHHHHTTC-C-EEEEECSSSSH
T ss_pred             CcCCEEEEECC-CHHHHHHHHHHHhCCC-C-eEEEEeCCchh
Confidence            34578999998 9999999999999875 2 78888886543

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=94.44  E-value=0.094  Score=35.39  Aligned_cols=38  Identities=21%  Similarity=0.378  Sum_probs=32.7

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+.+++|.|.| .|.+|+.+++.|...|.   +|++.+|...
T Consensus       143 ~l~g~~vgIIG-~G~iG~~vA~~l~~~G~---~V~~~d~~~~  180 (333)
T 2d0i_A          143 SLYGKKVGILG-MGAIGKAIARRLIPFGV---KLYYWSRHRK  180 (333)
T ss_dssp             CSTTCEEEEEC-CSHHHHHHHHHHGGGTC---EEEEECSSCC
T ss_pred             CCCcCEEEEEc-cCHHHHHHHHHHHHCCC---EEEEECCCcc
Confidence            36789999998 59999999999999987   7888888765

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=94.43  E-value=0.082  Score=34.62  Aligned_cols=38  Identities=21%  Similarity=0.288  Sum_probs=31.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++|.|.|+ |.+|..++..|.+.|+....|++.+|++.
T Consensus         3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~   40 (280)
T 3tri_A            3 TSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLD   40 (280)
T ss_dssp             CSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSH
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHH
Confidence            367888877 99999999999999865557888888653

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=94.43  E-value=0.071  Score=36.22  Aligned_cols=37  Identities=14%  Similarity=0.195  Sum_probs=32.1

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+.+++++|.|++..+|+.++..|+..|.   .|+.+.|+
T Consensus       174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gA---tVtv~nR~  210 (320)
T 1edz_A          174 RLYGKKCIVINRSEIVGRPLAALLANDGA---TVYSVDVN  210 (320)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSC---EEEEECSS
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHCCC---EEEEEeCc
Confidence            36799999999999999999999999976   67777664

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=94.41  E-value=0.038  Score=36.73  Aligned_cols=35  Identities=17%  Similarity=0.114  Sum_probs=29.2

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+|+|+|+ |.+|...+..+...|.   +|+++++++
T Consensus       166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga---~Vi~~~~~~  200 (340)
T 3s2e_A          166 PGQWVVISGI-GGLGHVAVQYARAMGL---RVAAVDIDD  200 (340)
T ss_dssp             TTSEEEEECC-STTHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC---eEEEEeCCH
Confidence            5789999987 8899999988888876   788887754

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=94.38  E-value=0.074  Score=33.92  Aligned_cols=37  Identities=19%  Similarity=0.205  Sum_probs=28.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCC-CcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCP-GIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~-~~~~V~~l~r~~~   64 (82)
                      ++|.|.|+ |.+|+.++..|.+.|. ....|+..+|++.
T Consensus         5 m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            5 IKLGFMGL-GQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            57999987 9999999999999971 1126777887654

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=94.35  E-value=0.091  Score=34.47  Aligned_cols=34  Identities=24%  Similarity=0.416  Sum_probs=29.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|.|.|+ |.+|..++..|.+.|+   .|+..+|++.
T Consensus        16 ~~I~VIG~-G~mG~~iA~~la~~G~---~V~~~d~~~~   49 (302)
T 1f0y_A           16 KHVTVIGG-GLMGAGIAQVAAATGH---TVVLVDQTED   49 (302)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSCHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCHH
Confidence            57999988 9999999999999987   8888888643

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=94.35  E-value=0.095  Score=34.85  Aligned_cols=36  Identities=19%  Similarity=0.207  Sum_probs=28.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|.|.|+ |.+|..++..|...+. ..+|..+++++.
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~-g~~V~l~D~~~~   36 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQL-ARELVLLDVVEG   36 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSSS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCChh
Confidence            47999998 9999999999888631 128999998754

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=94.26  E-value=0.11  Score=34.26  Aligned_cols=36  Identities=22%  Similarity=0.188  Sum_probs=29.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++|.|.|+ |.+|..++..|...|. +.+|..++|++
T Consensus         7 ~mkI~IiGa-G~vG~~~a~~l~~~g~-~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGA-GAVGSTLAFAAAQRGI-AREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence            368999998 9999999999998864 34688888753

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=94.22  E-value=0.11  Score=34.87  Aligned_cols=37  Identities=16%  Similarity=0.161  Sum_probs=32.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.|++++|.|+++.+|+-++..|+..|.   .|+.+.+..
T Consensus       157 l~gk~vvVIG~s~iVG~p~A~lL~~~gA---tVtv~hs~t  193 (288)
T 1b0a_A          157 TFGLNAVVIGASNIVGRPMSMELLLAGC---TTTVTHRFT  193 (288)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTC---EEEEECSSC
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHCCC---eEEEEeCCc
Confidence            5799999999999999999999999987   777776544

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=94.22  E-value=0.11  Score=34.97  Aligned_cols=36  Identities=22%  Similarity=0.252  Sum_probs=30.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+|.|+|+ |.+|..++..|+..+. +.+|+.+++++.
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~-~~el~l~D~~~~   36 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDV-AKEVVMVDIKDG   36 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-SSEEEEECSSTT
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCchH
Confidence            57999996 9999999999999864 458888888664

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=94.19  E-value=0.1  Score=34.86  Aligned_cols=35  Identities=20%  Similarity=0.153  Sum_probs=29.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|.|.|+ |.+|..++..|+..|. ..+|..+++++
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~-~~~V~l~D~~~   35 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGF-AREMVLIDVDK   35 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC-CCeEEEEeCCh
Confidence            47899998 9999999999999875 44788888754

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=94.17  E-value=0.21  Score=33.88  Aligned_cols=36  Identities=17%  Similarity=0.305  Sum_probs=29.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.+++|+|.|+ |.+|..+++.+.+.|.   +|++++..+
T Consensus        10 ~~~~~IlIlG~-G~lg~~la~aa~~lG~---~viv~d~~~   45 (377)
T 3orq_A           10 KFGATIGIIGG-GQLGKMMAQSAQKMGY---KVVVLDPSE   45 (377)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCT
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEECCC
Confidence            45789999986 5689999999999988   778877654

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=94.16  E-value=0.053  Score=36.80  Aligned_cols=35  Identities=17%  Similarity=0.231  Sum_probs=29.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhC-CCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSC-PGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g-~~~~~V~~l~r~~   63 (82)
                      .|.+|+|+| +|.+|...+..+...| .   +|+++++++
T Consensus       195 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~---~Vi~~~~~~  230 (380)
T 1vj0_A          195 AGKTVVIQG-AGPLGLFGVVIARSLGAE---NVIVIAGSP  230 (380)
T ss_dssp             BTCEEEEEC-CSHHHHHHHHHHHHTTBS---EEEEEESCH
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHcCCc---eEEEEcCCH
Confidence            478999999 8999999999888886 4   788888754

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.16  E-value=0.053  Score=36.37  Aligned_cols=36  Identities=11%  Similarity=0.111  Sum_probs=28.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .|.+|+|.|+ |.+|...+..+...|.  ..|+++++++
T Consensus       179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga--~~Vi~~~~~~  214 (363)
T 3m6i_A          179 LGDPVLICGA-GPIGLITMLCAKAAGA--CPLVITDIDE  214 (363)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTC--CSEEEEESCH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEECCCH
Confidence            5789999998 9999999988888865  2477777653

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=94.15  E-value=0.13  Score=34.32  Aligned_cols=38  Identities=16%  Similarity=0.100  Sum_probs=32.5

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+.+++|.|.| .|.||+.+++.+...|.   +|++.+|...
T Consensus       139 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~---~V~~~d~~~~  176 (307)
T 1wwk_A          139 ELEGKTIGIIG-FGRIGYQVAKIANALGM---NILLYDPYPN  176 (307)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEECSSCC
T ss_pred             ccCCceEEEEc-cCHHHHHHHHHHHHCCC---EEEEECCCCC
Confidence            36789999996 59999999999999987   8888888654

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.15  E-value=0.082  Score=34.07  Aligned_cols=35  Identities=26%  Similarity=0.451  Sum_probs=29.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++++|+|.|| |-+|..-++.|++.|.   .|++++..
T Consensus        29 L~gk~VLVVGg-G~va~~ka~~Ll~~GA---~VtVvap~   63 (223)
T 3dfz_A           29 LKGRSVLVVGG-GTIATRRIKGFLQEGA---AITVVAPT   63 (223)
T ss_dssp             CTTCCEEEECC-SHHHHHHHHHHGGGCC---CEEEECSS
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEECCC
Confidence            67999999997 6789999999999988   67777653

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.14  E-value=0.068  Score=34.80  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=29.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ++|.|.| .|.+|..++..|.+.|+   .|++.+|++..
T Consensus         2 ~~I~iiG-~G~mG~~~a~~l~~~G~---~V~~~dr~~~~   36 (287)
T 3pdu_A            2 TTYGFLG-LGIMGGPMAANLVRAGF---DVTVWNRNPAK   36 (287)
T ss_dssp             CCEEEEC-CSTTHHHHHHHHHHHTC---CEEEECSSGGG
T ss_pred             CeEEEEc-cCHHHHHHHHHHHHCCC---eEEEEcCCHHH
Confidence            4688886 79999999999999988   78888887543

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=94.14  E-value=0.13  Score=34.38  Aligned_cols=37  Identities=8%  Similarity=-0.024  Sum_probs=32.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.|++|.|.| .|.+|+.+++.+...|.   +|++.+|...
T Consensus       140 l~g~~vgIIG-~G~IG~~~A~~l~~~G~---~V~~~d~~~~  176 (313)
T 2ekl_A          140 LAGKTIGIVG-FGRIGTKVGIIANAMGM---KVLAYDILDI  176 (313)
T ss_dssp             CTTCEEEEES-CSHHHHHHHHHHHHTTC---EEEEECSSCC
T ss_pred             CCCCEEEEEe-eCHHHHHHHHHHHHCCC---EEEEECCCcc
Confidence            6789999996 59999999999999987   8888888654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=94.11  E-value=0.11  Score=33.93  Aligned_cols=34  Identities=15%  Similarity=0.070  Sum_probs=29.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|.|.|+ |.+|..++..|.+.|+   .|+..+|++.
T Consensus         5 ~kV~VIGa-G~mG~~iA~~la~~G~---~V~l~d~~~~   38 (283)
T 4e12_A            5 TNVTVLGT-GVLGSQIAFQTAFHGF---AVTAYDINTD   38 (283)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC---eEEEEeCCHH
Confidence            57888875 9999999999999988   8888888654

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=94.11  E-value=0.16  Score=34.00  Aligned_cols=39  Identities=15%  Similarity=0.174  Sum_probs=32.7

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      .+.+++|.|.| .|.||+.+++.+...|.   +|++.+|....
T Consensus       141 ~l~g~~vgIIG-~G~IG~~~A~~l~~~G~---~V~~~d~~~~~  179 (311)
T 2cuk_A          141 DLQGLTLGLVG-MGRIGQAVAKRALAFGM---RVVYHARTPKP  179 (311)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEECSSCCS
T ss_pred             CCCCCEEEEEE-ECHHHHHHHHHHHHCCC---EEEEECCCCcc
Confidence            36789999996 59999999999999987   78888886543

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=94.09  E-value=0.11  Score=35.42  Aligned_cols=36  Identities=19%  Similarity=0.244  Sum_probs=30.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++.++|.|.| .|.+|..++..|.+.|+   .|.+.+|++
T Consensus        20 m~~mkIgiIG-lG~mG~~~A~~L~~~G~---~V~v~dr~~   55 (358)
T 4e21_A           20 FQSMQIGMIG-LGRMGADMVRRLRKGGH---ECVVYDLNV   55 (358)
T ss_dssp             --CCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             hcCCEEEEEC-chHHHHHHHHHHHhCCC---EEEEEeCCH
Confidence            4568899997 79999999999999987   888888864

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=94.06  E-value=0.13  Score=34.75  Aligned_cols=36  Identities=17%  Similarity=0.230  Sum_probs=31.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +.|++++|.|++..+|+.++..|+..|.   .|+.+.+.
T Consensus       163 l~gk~vvVIG~s~iVG~p~A~lL~~~gA---tVtv~hs~  198 (301)
T 1a4i_A          163 IAGRHAVVVGRSKIVGAPMHDLLLWNNA---TVTTCHSK  198 (301)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC---EEEEECTT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHhCCC---eEEEEECC
Confidence            6799999999999999999999999987   77777654

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=94.02  E-value=0.12  Score=35.72  Aligned_cols=37  Identities=14%  Similarity=0.150  Sum_probs=30.2

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+++|+|.|+ |.+|+.++..+.+.|.   +|++++..+
T Consensus        32 ~~~~~~IlIlG~-G~lg~~~~~aa~~lG~---~v~v~d~~~   68 (419)
T 4e4t_A           32 ILPGAWLGMVGG-GQLGRMFCFAAQSMGY---RVAVLDPDP   68 (419)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSCT
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEECCCC
Confidence            356899999975 6899999999999988   777777543

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.01  E-value=0.09  Score=36.49  Aligned_cols=33  Identities=15%  Similarity=0.171  Sum_probs=28.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|.|.| +|++|..++..|.+.|+   .|++++|++
T Consensus         1 mkI~VIG-~G~vG~~~A~~la~~G~---~V~~~d~~~   33 (436)
T 1mv8_A            1 MRISIFG-LGYVGAVCAGCLSARGH---EVIGVDVSS   33 (436)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            3688887 79999999999999988   788888854

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=94.00  E-value=0.14  Score=34.52  Aligned_cols=37  Identities=19%  Similarity=0.059  Sum_probs=31.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.+++|.|.|. |-||+.+++.+...|.   +|++.+|...
T Consensus       144 l~g~~vgIiG~-G~IG~~~A~~l~~~G~---~V~~~d~~~~  180 (331)
T 1xdw_A          144 VRNCTVGVVGL-GRIGRVAAQIFHGMGA---TVIGEDVFEI  180 (331)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSCC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC---EEEEECCCcc
Confidence            67899999975 9999999999999987   7888888654

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=93.99  E-value=0.16  Score=34.67  Aligned_cols=39  Identities=28%  Similarity=0.274  Sum_probs=27.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCC----CcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCP----GIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~----~~~~V~~l~r~   62 (82)
                      .+..+|.|+||+|.||+.++..|.....    ...++..++..
T Consensus        22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~   64 (345)
T 4h7p_A           22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIE   64 (345)
T ss_dssp             CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCG
T ss_pred             CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCC
Confidence            4456899999999999999987776521    11256666654

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=93.96  E-value=0.12  Score=34.58  Aligned_cols=38  Identities=18%  Similarity=0.233  Sum_probs=29.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      .++|.|+|+ |++|..++..|+..+. +.+|..++.++..
T Consensus         7 ~~KI~IiGa-G~vG~~~a~~l~~~~~-~~ev~L~Di~~~~   44 (318)
T 1y6j_A            7 RSKVAIIGA-GFVGASAAFTMALRQT-ANELVLIDVFKEK   44 (318)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTC-SSEEEEECCC---
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCChHH
Confidence            368999998 9999999999988863 5588888886543

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=93.92  E-value=0.11  Score=35.24  Aligned_cols=37  Identities=22%  Similarity=0.243  Sum_probs=31.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.+++|.|.|. |.+|+.+++.|...|.   .|+..+|.+.
T Consensus       162 l~g~~vgIIG~-G~iG~~vA~~l~~~G~---~V~~~dr~~~  198 (333)
T 3ba1_A          162 FSGKRVGIIGL-GRIGLAVAERAEAFDC---PISYFSRSKK  198 (333)
T ss_dssp             CTTCCEEEECC-SHHHHHHHHHHHTTTC---CEEEECSSCC
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEECCCch
Confidence            67899999975 9999999999999987   6788887654

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=93.91  E-value=0.1  Score=35.69  Aligned_cols=37  Identities=16%  Similarity=0.233  Sum_probs=30.2

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+++++|+|.|+. .+|+++++.|...|.  ..+..++++
T Consensus        31 kL~~~~VlIvGaG-GlGs~va~~La~aGV--g~ItlvD~D   67 (340)
T 3rui_A           31 IIKNTKVLLLGAG-TLGCYVSRALIAWGV--RKITFVDNG   67 (340)
T ss_dssp             HHHTCEEEEECCS-HHHHHHHHHHHHTTC--CEEEEECCC
T ss_pred             HHhCCEEEEECCC-HHHHHHHHHHHHcCC--CEEEEecCC
Confidence            4678999999875 579999999999964  578887764

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=93.91  E-value=0.13  Score=34.63  Aligned_cols=34  Identities=26%  Similarity=0.359  Sum_probs=29.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .++|.|+|+ |.+|..++..|+..+.  .+|..++++
T Consensus         8 ~~kv~ViGa-G~vG~~ia~~l~~~g~--~~v~l~D~~   41 (315)
T 3tl2_A            8 RKKVSVIGA-GFTGATTAFLLAQKEL--ADVVLVDIP   41 (315)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCG
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--CeEEEEecc
Confidence            478999997 9999999999999865  478888876

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=93.90  E-value=0.17  Score=34.65  Aligned_cols=37  Identities=16%  Similarity=0.062  Sum_probs=31.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.+++|+|+|+ |-+|...++.+...|.   .|++.+|++.
T Consensus       170 l~g~~V~ViGa-G~iG~~aa~~a~~~Ga---~V~~~d~~~~  206 (384)
T 1l7d_A          170 VPPARVLVFGV-GVAGLQAIATAKRLGA---VVMATDVRAA  206 (384)
T ss_dssp             ECCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSCST
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            46899999996 9999999999999976   6888888654

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=93.89  E-value=0.11  Score=34.06  Aligned_cols=31  Identities=23%  Similarity=0.281  Sum_probs=27.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ++|.|.|+ |.+|..++..|.+.|+   .|+.++|
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~~g~---~V~~~~r   31 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVDNGN---EVRIWGT   31 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC---EEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC---eEEEEEc
Confidence            36888876 9999999999999987   7888887

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=93.88  E-value=0.13  Score=34.13  Aligned_cols=35  Identities=26%  Similarity=0.320  Sum_probs=28.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|.|+|+ |.+|..++..|...|. +.+|..+++++
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~-~~eV~L~D~~~   35 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGS-CSELVLVDRDE   35 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCH
Confidence            47999998 9999999999988864 44788888753

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=93.87  E-value=0.13  Score=32.73  Aligned_cols=33  Identities=27%  Similarity=0.461  Sum_probs=27.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhC-CCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSC-PGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g-~~~~~V~~l~r~~   63 (82)
                      ++|.|.|+ |.+|..++..|.+.| +   .|++.+|++
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~~---~v~~~~r~~   34 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQGGY---RIYIANRGA   34 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSC---EEEEECSSH
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCC---eEEEECCCH
Confidence            46888884 999999999999998 6   788888753

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=93.85  E-value=0.16  Score=34.04  Aligned_cols=36  Identities=11%  Similarity=0.021  Sum_probs=30.2

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+.+|+|+|+ |.+|...+..+...|.   .|+++++++.
T Consensus       180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga---~Vi~~~~~~~  215 (357)
T 2cf5_A          180 PGLRGGILGL-GGVGHMGVKIAKAMGH---HVTVISSSNK  215 (357)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC---EEEEEESSTT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC---eEEEEeCChH
Confidence            6789999995 9999999998888876   7888887644

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=93.84  E-value=0.097  Score=35.22  Aligned_cols=37  Identities=22%  Similarity=0.245  Sum_probs=30.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++|.|.| .|.+|..++..|.+.|.   .|++.+|++.
T Consensus        14 l~~~~I~IIG-~G~mG~alA~~L~~~G~---~V~~~~~~~~   50 (338)
T 1np3_A           14 IQGKKVAIIG-YGSQGHAHACNLKDSGV---DVTVGLRSGS   50 (338)
T ss_dssp             HHTSCEEEEC-CSHHHHHHHHHHHHTTC---CEEEECCTTC
T ss_pred             hcCCEEEEEC-chHHHHHHHHHHHHCcC---EEEEEECChH
Confidence            5678999997 69999999999999986   6777777643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	82
d1rkxa_	356	c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia	3e-06
d2bkaa1	232	c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H	1e-05
d2q46a1	252	c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (	2e-05
d2fr1a1	259	c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI	2e-05
d1y1pa1	342	c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo	3e-05
d1xgka_	350	c.2.1.2 (A:) Negative transcriptional regulator Nm	5e-05
d1oc2a_	346	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	6e-05
d1g0oa_	272	c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase	1e-04
d1qyda_	312	c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {	2e-04
d1qyca_	307	c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta	2e-04
d1rpna_	321	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo	3e-04
d1i24a_	393	c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1	4e-04
d2c5aa1	363	c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T	4e-04
d1hdoa_	205	c.2.1.2 (A:) Biliverdin IX beta reductase {Human (	5e-04
d2blla1	342	c.2.1.2 (A:316-657) Polymyxin resistance protein A	6e-04
d2a35a1	212	c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse	7e-04
d2b69a1	312	c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1	8e-04
d1e6ua_	315	c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras	0.001
d1r6da_	322	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	0.001
d1n7ha_	339	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr	0.001
d1db3a_	357	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric	0.001
d1orra_	338	c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella	0.002
d1udca_	338	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	0.002
d1kewa_	361	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	0.002
d1eq2a_	307	c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer	0.002
d1gy8a_	383	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	0.002
d1ek6a_	346	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	0.002
d1z45a2	347	c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep	0.002
d1sb8a_	341	c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W	0.003

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

 Score = 41.0 bits (94), Expect = 3e-06
 Identities = 17/57 (29%), Positives = 24/57 (42%)

Query: 21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIIN 77
          + F+Q + VFVTG TGF G  L   L      +K   L            R+A+ + 
Sbjct: 3  NSFWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQ 59

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 1e-05
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAPLDW 82
          QN+SVF+ G +G  G+VL++++L      K   +  R     +   +         + 
Sbjct: 13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEK 70

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.7 bits (88), Expect = 2e-05
 Identities = 13/54 (24%), Positives = 21/54 (38%)

Query: 29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAPLDW 82
          V VTG +G  G+++ +KL           L+   +  + I G     I    D 
Sbjct: 6  VLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDA 59

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

 Score = 38.5 bits (88), Expect = 2e-05
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAPL 80
           E+    +V VTGGTG +G  +   L R   G  ++ L+ R     D  G L   + A  
Sbjct: 4  DEWKPTGTVLVTGGTGGVGGQIARWLARR--GAPHLLLVSRSGPDADGAGELVAELEALG 61

Query: 81 DW 82
            
Sbjct: 62 AR 63

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

 Score = 37.9 bits (86), Expect = 3e-05
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 26 NRSVFVTGGTGFMGKVLVEKLLR 48
             V VTG  GF+   +VE+LL 
Sbjct: 11 GSLVLVTGANGFVASHVVEQLLE 33

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

 Score = 37.3 bits (85), Expect = 5e-05
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 25 QNRSVFVTGGTGFMGKVLVEKLLRS 49
          Q +++ V G TG  G  L+      
Sbjct: 2  QKKTIAVVGATGRQGASLIRVAAAV 26

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 37.3 bits (85), Expect = 6e-05
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYL 58
          Q +++ VTGG GF+G   V  +  + P +    L
Sbjct: 1  QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL 34

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 36.3 bits (83), Expect = 1e-04
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 11 SNMPAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLR 48
            +P P  P S   + +   VTG    +G+ +  +L R
Sbjct: 3  DAIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGR 40

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

 Score = 35.5 bits (80), Expect = 2e-04
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 29 VFVTGGTGFMGKVLVEKLLRS 49
          V + GGTG++GK +V   +  
Sbjct: 6  VLIVGGTGYIGKRIVNASISL 26

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

 Score = 35.5 bits (80), Expect = 2e-04
 Identities = 5/21 (23%), Positives = 12/21 (57%)

Query: 29 VFVTGGTGFMGKVLVEKLLRS 49
          + + G TG++G+ + +  L  
Sbjct: 6  ILLIGATGYIGRHVAKASLDL 26

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 35.4 bits (80), Expect = 3e-04
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 27 RSVFVTGGTGFMGKVLVEKLLR 48
          RS  VTG TG  G  L + LL 
Sbjct: 1  RSALVTGITGQDGAYLAKLLLE 22

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 34.9 bits (78), Expect = 4e-04
 Identities = 9/41 (21%), Positives = 15/41 (36%)

Query: 29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDIN 69
          V V GG G+ G      L +    +  +  L+R      + 
Sbjct: 4  VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLG 44

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 34.9 bits (79), Expect = 4e-04
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 25 QNRSVFVTGGTGFMGKVLVEKLLR 48
          +N  + +TG  GF+   +  +L  
Sbjct: 14 ENLKISITGAGGFIASHIARRLKH 37

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 5e-04
 Identities = 4/22 (18%), Positives = 11/22 (50%)

Query: 27 RSVFVTGGTGFMGKVLVEKLLR 48
          + + + G TG  G   + + ++
Sbjct: 4  KKIAIFGATGQTGLTTLAQAVQ 25

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

 Score = 34.5 bits (77), Expect = 6e-04
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 29 VFVTGGTGFMGKVLVEKLLR 48
          V + G  GF+G  L E+LLR
Sbjct: 3  VLILGVNGFIGNHLTERLLR 22

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 34.0 bits (76), Expect = 7e-04
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAPLDW 82
          + V + G TG  G+ L++++L   P +  +    R    +           A L  
Sbjct: 3  KRVLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAEHPRLDNPVGPLAELLP 57

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (77), Expect = 8e-04
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 29 VFVTGGTGFMGKVLVEKLLR 48
          + +TGG GF+G  L +KL+ 
Sbjct: 4  ILITGGAGFVGSHLTDKLMM 23

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

 Score = 33.7 bits (76), Expect = 0.001
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 29 VFVTGGTGFMGKVLVEKLLR 48
          VF+ G  G +G  +  +L +
Sbjct: 5  VFIAGHRGMVGSAIRRQLEQ 24

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 33.6 bits (76), Expect = 0.001
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 29 VFVTGGTGFMGKVLVEKLLR 48
          + VTGG GF+G   V +LL 
Sbjct: 3  LLVTGGAGFIGSHFVRQLLA 22

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 33.5 bits (75), Expect = 0.001
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 29 VFVTGGTGFMGKVLVEKLLR 48
            +TG TG  G  L E LL 
Sbjct: 4  ALITGITGQDGSYLTEFLLG 23

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

 Score = 33.6 bits (76), Expect = 0.001
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 29 VFVTGGTGFMGKVLVEKLLR 48
            +TG TG  G  L E LL 
Sbjct: 4  ALITGVTGQDGSYLAEFLLE 23

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

 Score = 33.2 bits (74), Expect = 0.002
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 29 VFVTGGTGFMGKVLVEKLLR 48
          + +TGG GF+G  L    L 
Sbjct: 3  LLITGGCGFLGSNLASFALS 22

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

 Score = 33.0 bits (74), Expect = 0.002
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 29 VFVTGGTGFMGKVLVEKLLR 48
          V VTGG+G++G     +LL+
Sbjct: 3  VLVTGGSGYIGSHTCVQLLQ 22

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 33.2 bits (75), Expect = 0.002
 Identities = 7/20 (35%), Positives = 14/20 (70%)

Query: 29 VFVTGGTGFMGKVLVEKLLR 48
          + +TGG GF+G  +V  +++
Sbjct: 3  ILITGGAGFIGSAVVRHIIK 22

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

 Score = 33.1 bits (73), Expect = 0.002
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL 59
          + VTGG GF+G  +V+ L     GI +I ++
Sbjct: 2  IIVTGGAGFIGSNIVKALNDK--GITDILVV 30

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

 Score = 32.8 bits (73), Expect = 0.002
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 29 VFVTGGTGFMGKVLVEKLLR 48
          V V GG G++G   V  LLR
Sbjct: 5  VLVCGGAGYIGSHFVRALLR 24

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (73), Expect = 0.002
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 29 VFVTGGTGFMGKVLVEKLLR 48
          V VTGG G++G   V +LL 
Sbjct: 5  VLVTGGAGYIGSHTVLELLE 24

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.7 bits (73), Expect = 0.002
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 29 VFVTGGTGFMGKVLVEKLLR 48
          V VTGG G++G   V +L+ 
Sbjct: 4  VLVTGGAGYIGSHTVVELIE 23

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 32.6 bits (73), Expect = 0.003
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 25 QNRSVFVTGGTGFMGKVLVEKLLR 48
          Q +   +TG  GF+G  L+E LL+
Sbjct: 15 QPKVWLITGVAGFIGSNLLETLLK 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	82
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	99.23
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	99.09
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	99.09
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	99.05
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	99.02
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	99.02
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	99.01
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	98.99
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	98.98
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	98.98
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	98.94
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	98.92
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.92
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.91
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	98.91
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.9
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	98.89
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.88
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	98.88
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	98.88
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	98.87
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	98.87
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	98.85
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.83
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	98.82
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.79
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	98.74
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	98.74
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	98.72
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.71
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	98.69
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	98.66
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	98.65
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	98.65
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	98.65
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	98.65
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	98.63
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	98.61
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	98.6
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	98.59
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	98.58
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	98.58
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	98.55
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	98.54
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	98.54
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	98.53
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	98.53
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	98.52
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	98.52
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	98.51
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	98.51
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	98.51
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	98.51
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	98.5
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	98.5
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	98.5
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	98.5
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	98.49
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	98.49
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	98.49
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	98.48
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	98.48
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	98.48
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	98.48
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	98.48
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	98.47
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	98.47
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	98.47
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	98.47
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	98.47
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	98.46
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	98.46
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	98.46
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	98.45
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	98.45
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	98.43
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	98.38
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	98.38
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	98.37
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	98.37
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	98.34
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	98.31
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	98.3
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	98.23
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	98.2
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.18
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	98.16
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	98.13
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	98.07
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	98.04
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	98.02
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	97.98
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	97.88
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.84
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	97.82
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	97.8
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	97.78
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	97.69
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	97.65
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.57
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.54
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.46
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.45
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.42
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.42
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.37
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	97.32
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	97.3
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	97.24
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.16
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	97.04
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.98
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	96.98
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	96.97
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.94
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.94
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.92
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.91
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.89
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.76
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	96.65
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.63
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.62
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.62
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.61
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.46
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.46
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.39
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	96.38
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	96.37
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.32
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.31
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.31
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.3
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	96.28
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	96.23
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.23
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.21
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	96.19
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.14
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.08
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	96.07
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.05
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	95.95
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.95
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.91
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.84
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.82
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.75
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.73
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	95.72
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.68
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.66
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.63
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.61
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.61
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	95.55
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.53
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.5
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	95.36
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.35
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.34
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.33
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.28
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.28
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.25
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.15
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.11
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	95.09
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.05
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.01
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.0
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	94.98
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.97
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	94.91
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	94.83
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.81
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	94.79
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.76
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	94.73
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	94.73
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.7
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	94.7
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.66
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.62
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.62
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.51
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.49
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.43
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	94.4
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.3
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	94.29
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.26
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.25
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	94.15
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.14
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.03
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	93.97
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.94
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	93.88
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.77
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.75
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.71
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	93.68
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	93.66
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	93.65
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	93.64
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.6
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	93.51
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.36
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	93.32
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.23
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.18
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	93.1
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.05
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	92.98
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	92.81
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.79
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.78
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	92.77
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	92.77
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.7
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	92.57
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	92.35
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	92.23
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	92.23
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	92.16
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.15
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	92.08
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	92.08
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	92.01
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	91.97
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	91.96
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	91.7
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	91.61
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	91.48
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	91.44
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	91.35
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	91.27
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	91.17
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	91.04
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	90.99
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	90.96
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	90.61
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.48
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	90.44
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.26
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	90.24
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	90.22
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	90.21
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	90.18
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	90.01
d1f0ka_	351	Peptidoglycan biosynthesis glycosyltransferase Mur	89.71
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	89.47
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	89.13
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	89.1
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	88.88
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	88.79
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	87.45
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	87.11
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	86.86
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	86.56
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	86.51
d1p3y1_	183	MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]}	86.5
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	85.66
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	85.5
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	85.47
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	85.46
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.46
d1ep3b2	160	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	84.85
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	84.84
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	84.65
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	84.57
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	83.94
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	83.94
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	83.76
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	83.44
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	83.36
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	83.35
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	82.22
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	81.79
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	81.2
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	80.73
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	80.59
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	80.4

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=99.23  E-value=8e-12  Score=81.98  Aligned_cols=40  Identities=33%  Similarity=0.367  Sum_probs=36.7

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|++|+|||||||||||++++++|++.|+   .|++++|...
T Consensus         4 ~~~~~KkILVTG~tGfIGs~lv~~Ll~~g~---~V~~~~r~~~   43 (356)
T d1rkxa_           4 SFWQGKRVFVTGHTGFKGGWLSLWLQTMGA---TVKGYSLTAP   43 (356)
T ss_dssp             HHHTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCS
T ss_pred             hhhCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCCC
Confidence            468999999999999999999999999998   8999998654

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.09  E-value=6.7e-11  Score=75.03  Aligned_cols=48  Identities=13%  Similarity=0.156  Sum_probs=40.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCccHHHHHHHHHh
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIIN   77 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~~~~~~~~~~~   77 (82)
                      |+|||||||||||++++++|.++|+   +|++++|+..+......++++++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~---~Vi~~~r~~~D~~d~~~~~~~l~   49 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV---EVIPTDVQDLDITNVLAVNKFFN   49 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE---EEEEECTTTCCTTCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC---EEEEeechhccCCCHHHHHHHHH
Confidence            5799999999999999999999988   89999998766555556666554

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=99.09  E-value=1.1e-10  Score=73.82  Aligned_cols=40  Identities=20%  Similarity=0.434  Sum_probs=35.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCccH
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDI   68 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~~   68 (82)
                      .|+|||||||||||++++++|+++|+   +|++++|.......
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~---~V~~l~R~~~~~~~   42 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH---PTFLLVRESTASSN   42 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCCCCTTTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEECCCccccc
Confidence            47899999999999999999999998   89999997665433

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=99.05  E-value=9e-11  Score=77.29  Aligned_cols=37  Identities=30%  Similarity=0.416  Sum_probs=33.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +||+||||||+||||++++++|+++|+   .|+++.|+..
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~---~V~~~vR~~~   46 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGY---KVRGTARSAS   46 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSHH
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEeCCch
Confidence            489999999999999999999999998   8899998643

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.02  E-value=2.4e-10  Score=75.34  Aligned_cols=36  Identities=19%  Similarity=0.291  Sum_probs=32.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|+||||||+||||++++++|+++|+   .|+++++..
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~---~V~~~d~~~   49 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH---YVIASDWKK   49 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEeCCC
Confidence            578999999999999999999999998   888887643

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=3.1e-10  Score=71.49  Aligned_cols=41  Identities=34%  Similarity=0.541  Sum_probs=35.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +++++|+|||||||+|++++++|+++| .+..|++++|++..
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g-~~~~v~~~~R~~~~   52 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQG-LFSKVTLIGRRKLT   52 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHT-CCSEEEEEESSCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCC-CCCEEEEEecChhh
Confidence            567899999999999999999999996 34589999997543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.01  E-value=2.8e-10  Score=73.60  Aligned_cols=35  Identities=34%  Similarity=0.340  Sum_probs=32.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+|||||||||||++++++|+++|+   +|++++|...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~---~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY---RVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC---EEEEEECCCC
Confidence            6899999999999999999999998   8999998654

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=98.99  E-value=3.5e-10  Score=72.12  Aligned_cols=39  Identities=31%  Similarity=0.623  Sum_probs=34.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCcc
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQD   67 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~   67 (82)
                      .++|||||||||||++++++|+++|+   .|++++|+.....
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~---~V~~~~R~~~~~~   41 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGH---PTYVLFRPEVVSN   41 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCSCCSSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEECCCcccc
Confidence            46799999999999999999999998   8999999765443

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.98  E-value=3.8e-10  Score=73.38  Aligned_cols=34  Identities=32%  Similarity=0.334  Sum_probs=31.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |++||||||||||++++++|+++|+   .|++++|..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~---~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY---EVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC---EEEEEECCC
Confidence            7899999999999999999999998   899999853

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=3.3e-10  Score=74.00  Aligned_cols=34  Identities=35%  Similarity=0.406  Sum_probs=31.0

Q ss_pred             cEE-EEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSV-FVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~i-lItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+| |||||+||||++++++|+++|+   +|++++|..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~---~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY---EVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC---EEEEEECCC
Confidence            467 9999999999999999999998   899999854

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=98.94  E-value=5.9e-10  Score=73.22  Aligned_cols=38  Identities=21%  Similarity=0.310  Sum_probs=34.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +.|+|+|||||||||++++++|+++|+   .|++++|+...
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~---~V~~l~R~~~~   39 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH---HVRAQVHSLKG   39 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC---CEEEEESCSCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC---eEEEEECCcch
Confidence            358999999999999999999999998   89999997654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.92  E-value=6.1e-10  Score=74.15  Aligned_cols=32  Identities=22%  Similarity=0.381  Sum_probs=28.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      ||+|||||||||||++++++|++.|+   .|++++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~---~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY---EVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC---EEEEEe
Confidence            68999999999999999999999998   777764

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=8.8e-10  Score=68.09  Aligned_cols=36  Identities=17%  Similarity=0.310  Sum_probs=32.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .|+|+||||||++|++++++|+++|+   +|++++|++.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~---~V~~~~R~~~   38 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGY---EVTVLVRDSS   38 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEEcChh
Confidence            47899999999999999999999988   8999999653

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=2.2e-09  Score=70.26  Aligned_cols=33  Identities=30%  Similarity=0.556  Sum_probs=30.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      |+||||||+||||+++++.|++.|+   +|++++|.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~---~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH---DVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC---EEEEEECC
Confidence            5799999999999999999999988   78888763

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.91  E-value=7.1e-10  Score=67.84  Aligned_cols=36  Identities=28%  Similarity=0.394  Sum_probs=31.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|||||||||||++++++|+++|+.+ .|+++.|++
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v-~v~~~~R~~   39 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSA   39 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTC-EEEEEESCH
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcE-EEEEEcCCH
Confidence            689999999999999999999998755 677788864

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=8.8e-10  Score=72.17  Aligned_cols=32  Identities=31%  Similarity=0.466  Sum_probs=29.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      |+|||||||||||++++++|++.|+   .|+++++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~---~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY---LPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC---CEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC---EEEEEEC
Confidence            6899999999999999999999988   7777764

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.89  E-value=1.2e-09  Score=71.46  Aligned_cols=37  Identities=30%  Similarity=0.371  Sum_probs=32.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.|+|||||||||||++++++|++.|+   +|++++|..
T Consensus        14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~---~V~~~d~~~   50 (341)
T d1sb8a_          14 AQPKVWLITGVAGFIGSNLLETLLKLDQ---KVVGLDNFA   50 (341)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCS
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcC---EEEEEECCC
Confidence            3568999999999999999999999998   889988743

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=3.5e-09  Score=69.48  Aligned_cols=33  Identities=27%  Similarity=0.454  Sum_probs=29.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      |.|||||||||||++++++|+++|+   +|+++++.
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~---~V~~~d~~   34 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY---DCVVADNL   34 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC---eEEEEECC
Confidence            6799999999999999999999988   78888753

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=98.88  E-value=1.1e-09  Score=70.61  Aligned_cols=31  Identities=26%  Similarity=0.514  Sum_probs=28.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +||||||+||||++++++|+++|+   +|+++++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~---~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI---DLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC---EEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC---EEEEEEC
Confidence            699999999999999999999988   7888764

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=1.1e-09  Score=72.51  Aligned_cols=34  Identities=29%  Similarity=0.313  Sum_probs=30.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |.|||||||||||++++++|++.|+   +|++++|..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~---~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY---EVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC---EEEEEECCC
Confidence            6789999999999999999999998   899999853

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=1.1e-09  Score=70.71  Aligned_cols=49  Identities=14%  Similarity=0.230  Sum_probs=35.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC-CCCCccHHHHHHHHHh
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR-PKHGQDINGRLAEIIN   77 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r-~~~~~~~~~~~~~~~~   77 (82)
                      .|+|||||||||||++++++|++.|+   .++.+++ +..+......+.+++.
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~---~vi~~~~~~~~~~~~~~~~~~~~~   51 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGD---VELVLRTRDELNLLDSRAVHDFFA   51 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT---EEEECCCTTTCCTTCHHHHHHHHH
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcC---EEEEecCchhccccCHHHHHHHHh
Confidence            47899999999999999999999987   5555543 3333334455555543

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.9e-09  Score=70.16  Aligned_cols=33  Identities=27%  Similarity=0.591  Sum_probs=30.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      |+|+||||+||||++++++|+++|+   .|++++|.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~---~V~~~d~~   34 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH---EVTVVDNF   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC---EEEEEeCC
Confidence            7899999999999999999999988   78888763

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.85  E-value=1.8e-09  Score=66.65  Aligned_cols=38  Identities=21%  Similarity=0.448  Sum_probs=32.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .|+|+|||||||||++++++|+++++ +..|++++|++.
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~-~~~v~~~~r~~~   39 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPT-LAKVIAPARKAL   39 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTT-CCEEECCBSSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-eEEEEEEeCCch
Confidence            37999999999999999999999975 336888888653

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.83  E-value=3.8e-09  Score=69.26  Aligned_cols=34  Identities=29%  Similarity=0.650  Sum_probs=28.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      .|+|||||||||||++++++|++.|+++ .|++++
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v-~v~~~d   35 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDV-HVTVLD   35 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTC-EEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCe-EEEEEe
Confidence            3789999999999999999999998855 345544

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=2.5e-09  Score=69.80  Aligned_cols=34  Identities=35%  Similarity=0.490  Sum_probs=29.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      |+|||||||||||++++++|+++|+.  +|+++++.
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~--~V~~ld~~   34 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIG   34 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC--EEEEEESC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC--EEEEEeCC
Confidence            57999999999999999999999731  78888764

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.79  E-value=3.9e-09  Score=70.06  Aligned_cols=33  Identities=30%  Similarity=0.610  Sum_probs=28.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEeC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRS-CPGIKNIYLLMR   61 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~-g~~~~~V~~l~r   61 (82)
                      +|+||||||+||||++++++|++. ++   .|+++++
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~---~V~~~D~   35 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNH---SVVIVDS   35 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC---EEEEEEC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCC---EEEEEec
Confidence            578999999999999999999874 55   7888763

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=4.6e-09  Score=67.59  Aligned_cols=42  Identities=24%  Similarity=0.374  Sum_probs=37.5

Q ss_pred             hhhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        20 ~~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++.++||+++||||++.||.++++.|+++|.   .|++.+|+.+
T Consensus         8 ~~~~L~GK~alITGassGIG~aiA~~la~~G~---~Vil~~r~~~   49 (269)
T d1xu9a_           8 RPEMLQGKKVIVTGASKGIGREMAYHLAKMGA---HVVVTARSKE   49 (269)
T ss_dssp             CGGGGTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CccccCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            35568999999999999999999999999998   8999999643

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.74  E-value=1.8e-08  Score=64.78  Aligned_cols=48  Identities=21%  Similarity=0.304  Sum_probs=40.4

Q ss_pred             CCCCCCChhhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         13 MPAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        13 ~~~~~~~~~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++.++.+.+..++||+++||||++.||.++++.|+++|.   .|+..+|+.
T Consensus         5 ~~~~~~~~~~sL~gK~~lITGas~GIG~aia~~la~~Ga---~Vvi~~~~~   52 (272)
T d1g0oa_           5 IPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGC---KVIVNYANS   52 (272)
T ss_dssp             CCSCSSGGGGCCTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCCCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEeCCc
Confidence            445555667779999999999999999999999999998   777777653

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=98.72  E-value=6.4e-09  Score=65.78  Aligned_cols=47  Identities=19%  Similarity=0.158  Sum_probs=32.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC----CccHHHHHHHHHh
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH----GQDINGRLAEIIN   77 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~----~~~~~~~~~~~~~   77 (82)
                      |+||||||+||||++++++|.+.|+    ++.+.+...    +....+.++++++
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~----~v~~~~~~~~~~~Dl~~~~~~~~~i~   51 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGN----LIALDVHSKEFCGDFSNPKGVAETVR   51 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSE----EEEECTTCSSSCCCTTCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC----EEEEECCCccccCcCCCHHHHHHHHH
Confidence            5799999999999999999999864    444444332    2223445555543

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.71  E-value=3.3e-09  Score=70.38  Aligned_cols=33  Identities=21%  Similarity=0.633  Sum_probs=27.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      |+||||||+||||++++++|++.|+.  .|.++++
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~--vv~~~d~   33 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQD--TVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC--EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC--EEEEEeC
Confidence            57999999999999999999999873  3555554

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.8e-08  Score=63.70  Aligned_cols=40  Identities=25%  Similarity=0.351  Sum_probs=36.1

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      .++||.++||||++.||.+++++|+++|+   .|+..+|+.+.
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~---~V~~~~r~~~~   41 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGA---SAVLLDLPNSG   41 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECTTSS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCChHH
Confidence            37899999999999999999999999998   88889987653

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=98.66  E-value=2.3e-08  Score=64.01  Aligned_cols=39  Identities=13%  Similarity=0.250  Sum_probs=34.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      |+||+|+||||++.||.+++++|+++|.   .|+++.|..+.
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~---~vii~~r~~~~   41 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNL---KNFVILDRVEN   41 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCC---SEEEEEESSCC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEECCccc
Confidence            7899999999999999999999999988   67777776554

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=98.65  E-value=3.8e-08  Score=63.53  Aligned_cols=40  Identities=23%  Similarity=0.302  Sum_probs=36.4

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ..|+||+++||||+|.||++++++|+++|.   .|+..+|+..
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga---~Vii~~r~~~   60 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGA---QCVIASRKMD   60 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEECCHH
Confidence            458999999999999999999999999998   8999998643

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1e-08  Score=65.27  Aligned_cols=38  Identities=26%  Similarity=0.385  Sum_probs=34.9

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++||+++||||++.||+++++.|+++|+   .|+..+|++
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~---~V~~~~r~~   41 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGA---RVVAVSRTQ   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEECCH
Confidence            37899999999999999999999999998   888888864

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=98.65  E-value=1.8e-08  Score=64.54  Aligned_cols=40  Identities=20%  Similarity=0.400  Sum_probs=36.3

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      .|+||+++||||++.||.++++.|+++|+   .|+..+|+...
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga---~V~i~~r~~~~   45 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGA---NVAVIYRSAAD   45 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTE---EEEEEESSCTT
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHH
Confidence            38899999999999999999999999988   88999997654

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=1.9e-08  Score=63.68  Aligned_cols=31  Identities=32%  Similarity=0.590  Sum_probs=26.5

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        29 ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ||||||+||||++++++|+++|+  .+|+++++
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~--~~V~~~d~   32 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGI--TDILVVDN   32 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTC--CCEEEEEC
T ss_pred             EEEecCccHHHHHHHHHHHhCCC--CeEEEEEC
Confidence            89999999999999999999974  25777653

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=98.63  E-value=3.7e-08  Score=62.78  Aligned_cols=39  Identities=5%  Similarity=0.140  Sum_probs=34.9

Q ss_pred             hccCcEEEEEcCCC--hHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         23 FYQNRSVFVTGGTG--FMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        23 ~~~~~~ilItG~tG--~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +|+||++|||||+|  .||.+++++|+++|.   .|++.+|++.
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga---~V~i~~r~~~   42 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGA---TLAFTYLNES   42 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTC---EEEEEESSTT
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            47899999999887  799999999999998   8889998754

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=98.61  E-value=3.8e-08  Score=62.87  Aligned_cols=39  Identities=21%  Similarity=0.373  Sum_probs=35.6

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .|+||+++||||++.||.++++.|+++|+   .|+..+|+++
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~---~V~~~~~~~~   40 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGA---LVALCDLRPE   40 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSTT
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            47899999999999999999999999998   8888888754

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.60  E-value=3.5e-08  Score=62.66  Aligned_cols=39  Identities=26%  Similarity=0.370  Sum_probs=35.5

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .|+||+++||||++.||.++++.|+++|+   .|++.+|+..
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga---~V~~~~r~~~   42 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGH---KVAVTHRGSG   42 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCcc
Confidence            38999999999999999999999999998   8888888654

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.59  E-value=5.7e-09  Score=67.79  Aligned_cols=35  Identities=31%  Similarity=0.512  Sum_probs=28.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcc---eEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIK---NIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~---~V~~l~r   61 (82)
                      |+|+||||+||||++++++|++.|+.+.   +|+.+++
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~   38 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDS   38 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeC
Confidence            5799999999999999999999987433   4555543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=7.4e-08  Score=60.89  Aligned_cols=39  Identities=13%  Similarity=0.277  Sum_probs=34.7

Q ss_pred             hccCcEEEEEcCCC--hHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         23 FYQNRSVFVTGGTG--FMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        23 ~~~~~~ilItG~tG--~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +|+||+++||||+|  .||+++++.|+++|.   .|+...|++.
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~---~V~i~~~~~~   42 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGA---ELAFTYQNDK   42 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC---EEEEEESSTT
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence            47899999999998  799999999999998   7888888744

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.58  E-value=5.2e-08  Score=59.84  Aligned_cols=39  Identities=21%  Similarity=0.180  Sum_probs=35.5

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++||+++||||+|.||..+++.|++.|.   .|+.+.|+.+
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~---~V~~~~r~~~   58 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA---EVVLCGRKLD   58 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc---chhhcccchH
Confidence            37899999999999999999999999988   8899999754

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=4e-08  Score=62.93  Aligned_cols=38  Identities=21%  Similarity=0.338  Sum_probs=34.8

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .|+||.++||||++.||.++++.|+++|.   .|+..+|+.
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~---~Vv~~~r~~   44 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALVQQGL---KVVGCARTV   44 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            38999999999999999999999999998   788888864

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=98.54  E-value=3.4e-08  Score=63.44  Aligned_cols=39  Identities=18%  Similarity=0.336  Sum_probs=35.2

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.|+||.++||||++.||.++++.|+++|.   .|+..+|+.
T Consensus         2 nrL~gKvalITGas~GIG~aia~~la~~Ga---~V~i~~r~~   40 (268)
T d2bgka1           2 NRLQDKVAIITGGAGGIGETTAKLFVRYGA---KVVIADIAD   40 (268)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            358999999999999999999999999998   888888853

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=3.8e-08  Score=62.58  Aligned_cols=37  Identities=22%  Similarity=0.301  Sum_probs=34.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+||+++||||++.||+++++.|+++|+   .|+..+|++
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga---~V~~~~r~~   39 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGA---KVVAVTRTN   39 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            7899999999999999999999999998   888888864

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=98.53  E-value=5.1e-08  Score=62.50  Aligned_cols=37  Identities=27%  Similarity=0.431  Sum_probs=34.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++||+++||||++.||++++++|+++|+   .|+..+|++
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~---~V~i~~r~~   40 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA---RVYTCSRNE   40 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            6899999999999999999999999998   889899864

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=4e-08  Score=62.87  Aligned_cols=38  Identities=24%  Similarity=0.368  Sum_probs=34.8

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .|+||+++||||++.||.++++.|+++|.   .|+..+|++
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga---~V~i~~r~~   40 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA---RVVICDKDE   40 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            48899999999999999999999999998   888888864

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=4.7e-08  Score=63.91  Aligned_cols=41  Identities=29%  Similarity=0.438  Sum_probs=36.5

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +..|+||+++||||++.||.++++.|+++|+   .|++.+|+.+
T Consensus         7 ~g~L~gKvalITGas~GIG~aia~~la~~Ga---~Vvi~~r~~~   47 (297)
T d1yxma1           7 PGLLQGQVAIVTGGATGIGKAIVKELLELGS---NVVIASRKLE   47 (297)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            3568999999999999999999999999998   8888888643

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.52  E-value=9.3e-08  Score=60.30  Aligned_cols=37  Identities=14%  Similarity=0.311  Sum_probs=34.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++||+++||||++.||+++++.|+++|+   .|+..+|++
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga---~V~~~~r~~   38 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGA---EVTICARNE   38 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            5799999999999999999999999998   888888863

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.51  E-value=4.8e-08  Score=62.31  Aligned_cols=38  Identities=16%  Similarity=0.179  Sum_probs=34.8

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .|+||+++||||++.||+++++.|+++|+   .|+..+|++
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~---~V~~~~r~~   40 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGA---KVVFGDILD   40 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            47899999999999999999999999998   888888864

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=98.51  E-value=4.9e-08  Score=63.01  Aligned_cols=37  Identities=22%  Similarity=0.517  Sum_probs=34.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++||+++||||++.||+++++.|+++|.   .|+..+|+.
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga---~V~i~~r~~   39 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGA---KVAVLDKSA   39 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            7899999999999999999999999998   888888864

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=98.51  E-value=9e-08  Score=60.91  Aligned_cols=39  Identities=15%  Similarity=0.271  Sum_probs=35.2

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .|+||.++||||++.||+++++.|+++|+   .|+..+|++.
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga---~V~~~~~~~~   40 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGA---DIAIADLVPA   40 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCch
Confidence            47899999999999999999999999998   7888888654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=5.2e-08  Score=62.36  Aligned_cols=37  Identities=11%  Similarity=0.170  Sum_probs=34.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+||+++||||++.||.+++++|+++|+   .|+..+|+.
T Consensus         9 L~gK~alITGas~GIG~aia~~la~~Ga---~V~~~~r~~   45 (255)
T d1fmca_           9 LDGKCAIITGAGAGIGKEIAITFATAGA---SVVVSDINA   45 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            7899999999999999999999999998   888888864

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=4.1e-08  Score=62.45  Aligned_cols=37  Identities=16%  Similarity=0.321  Sum_probs=34.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+||+++||||++.||+++++.|+++|+   .|+..+|++
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~---~Vv~~~r~~   38 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGA---KVIGTATSE   38 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            6899999999999999999999999998   788888864

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.50  E-value=5.3e-08  Score=61.89  Aligned_cols=37  Identities=14%  Similarity=0.273  Sum_probs=34.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+||+++||||++.||.++++.|+++|+   .|+..+|+.
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~---~V~~~~r~~   39 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGA---RLVACDIEE   39 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            7899999999999999999999999998   888888864

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=98.50  E-value=5.7e-08  Score=62.29  Aligned_cols=37  Identities=16%  Similarity=0.254  Sum_probs=34.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+||+++||||++.||.++++.|+++|.   .|+..+|+.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga---~V~~~~r~~   39 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGA---RVVLADVLD   39 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            7899999999999999999999999998   888888864

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=98.50  E-value=3.9e-08  Score=62.78  Aligned_cols=38  Identities=18%  Similarity=0.298  Sum_probs=34.8

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .|+||+++||||++.||.++++.|+++|.   .|+..+|+.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga---~V~~~~r~~   40 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGA---KVMITGRHS   40 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            48899999999999999999999999998   888888854

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=98.49  E-value=1.2e-07  Score=60.20  Aligned_cols=38  Identities=16%  Similarity=0.336  Sum_probs=34.8

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .|+||+++||||++.||.+++++|+++|+   .|+..+|+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~---~V~~~~r~~   39 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGA---SLVAVDREE   39 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            37899999999999999999999999998   888888864

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.49  E-value=1.6e-07  Score=59.94  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=34.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++||+++||||++.||+++++.|+++|+   .|...+|+.+
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga---~V~i~~r~~~   40 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGC---SVVVASRNLE   40 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            6899999999999999999999999998   8888888643

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=98.49  E-value=6e-08  Score=62.13  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=34.7

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .|+||+++||||++.||.++++.|+++|.   .|+..+|+.
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga---~V~~~~r~~   39 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGT---AIALLDMNR   39 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            37899999999999999999999999998   888888864

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.48  E-value=1.6e-07  Score=58.44  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=32.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +|+++||||++.||++++++|+++|+   .|++.+|+.+
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga---~V~i~~~~~~   36 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGY---RVVVLDLRRE   36 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC---EEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCcc
Confidence            48999999999999999999999998   8888888654

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.48  E-value=4.8e-08  Score=62.90  Aligned_cols=37  Identities=19%  Similarity=0.378  Sum_probs=34.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+||+++||||++.||+++++.|+++|.   .|+..+|+.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga---~V~l~~r~~   39 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGA---NVTITGRSS   39 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            7899999999999999999999999998   888888864

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=6.6e-08  Score=61.68  Aligned_cols=38  Identities=18%  Similarity=0.238  Sum_probs=35.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++||.++||||++.||++++++|+++|.   .|+..+|+.+
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~---~V~l~~r~~~   42 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKS---KLVLWDINKH   42 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            7899999999999999999999999998   8899998643

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=98.48  E-value=6.7e-08  Score=61.90  Aligned_cols=37  Identities=27%  Similarity=0.400  Sum_probs=34.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++||+++||||++.||+++++.|+++|+   .|+..+|++
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga---~V~~~~r~~   42 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGA---SVYTCSRNQ   42 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            6899999999999999999999999998   888888864

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.48  E-value=1.5e-07  Score=59.20  Aligned_cols=36  Identities=22%  Similarity=0.237  Sum_probs=31.9

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +||+|+||||+|.||.++++.|+++|+   .|..+++..
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~---~V~~~~~~~   36 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNW---WVASIDVVE   36 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            479999999999999999999999998   777777654

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=98.47  E-value=4.5e-08  Score=62.59  Aligned_cols=39  Identities=23%  Similarity=0.258  Sum_probs=35.0

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.|+||+++||||++.||.++++.|+++|.   .|+..+|++
T Consensus         2 nrL~gK~alITGas~GIG~aia~~la~~Ga---~V~~~~~~~   40 (253)
T d1hxha_           2 NRLQGKVALVTGGASGVGLEVVKLLLGEGA---KVAFSDINE   40 (253)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            358999999999999999999999999998   788888854

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.1e-07  Score=60.40  Aligned_cols=37  Identities=8%  Similarity=0.117  Sum_probs=34.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+||+++||||++.||+++++.|+++|+   .|+..+|++
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~---~Vi~~~r~~   40 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGA---KVIATDINE   40 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            8899999999999999999999999998   888888864

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.47  E-value=1.8e-07  Score=59.66  Aligned_cols=37  Identities=14%  Similarity=0.144  Sum_probs=32.5

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+.||+++||||++.||.++++.|+++|+   .|+...+.
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~---~Vvi~~~~   39 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGA---SVVVNYGS   39 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEcCC
Confidence            47899999999999999999999999998   67765553

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.47  E-value=5.3e-08  Score=62.79  Aligned_cols=37  Identities=16%  Similarity=0.334  Sum_probs=34.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+||+++||||++.||.++++.|+++|.   .|+..+|+.
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga---~V~~~~r~~   38 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGA---QVTITGRNE   38 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            7899999999999999999999999998   888888864

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.47  E-value=5.3e-08  Score=62.26  Aligned_cols=37  Identities=14%  Similarity=0.283  Sum_probs=34.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+||+++||||++.||+++++.|+++|.   .|++.+|+.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga---~V~~~~r~~   39 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGA---RVAIADINL   39 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTE---EEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            7899999999999999999999999988   788888863

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=98.46  E-value=1.1e-07  Score=60.83  Aligned_cols=37  Identities=22%  Similarity=0.178  Sum_probs=34.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++||+++||||++.||.++++.|+++|.   .|+..+|+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga---~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGA---DIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            7899999999999999999999999998   888888864

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.46  E-value=1.5e-07  Score=59.70  Aligned_cols=38  Identities=18%  Similarity=0.289  Sum_probs=33.1

Q ss_pred             ccCcEEEEEcCCC--hHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTG--FMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG--~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+||+++||||+|  .||.+++++|+++|.   .|+...|++.
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga---~V~i~~~~~~   45 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA---EVALSYQAER   45 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTC---EEEEEESSGG
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC---EEEEEeCcHH
Confidence            7899999999987  799999999999998   7777777643

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.46  E-value=6.1e-08  Score=62.10  Aligned_cols=39  Identities=13%  Similarity=0.250  Sum_probs=35.2

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .|+||.++||||++.||++++++|+++|.   .|+..+|+.+
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga---~V~~~~r~~~   40 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGA---KVTITGRHAE   40 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            37899999999999999999999999998   8888888643

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.45  E-value=6.5e-08  Score=62.04  Aligned_cols=37  Identities=30%  Similarity=0.391  Sum_probs=34.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++||+++||||++.||.++++.|+++|.   .|+..+|++
T Consensus         6 LkgK~alVTGas~GIG~aiA~~la~~Ga---~V~~~~r~~   42 (259)
T d1xq1a_           6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA---VIHTCARNE   42 (259)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            6899999999999999999999999998   888888864

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=98.45  E-value=8.9e-08  Score=61.33  Aligned_cols=38  Identities=21%  Similarity=0.398  Sum_probs=34.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+||+++||||++.||+++++.|+++|.   .|+..+|+.+
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga---~V~i~~r~~~   39 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGA---KLSLVDVSSE   39 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            7899999999999999999999999998   8888888643

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=98.43  E-value=2.9e-07  Score=59.01  Aligned_cols=37  Identities=19%  Similarity=0.340  Sum_probs=34.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+||+++||||++.||.++++.|+++|+   .|++.+|+.
T Consensus         5 L~gK~alITGas~GIG~aia~~la~~G~---~Vv~~~r~~   41 (261)
T d1geea_           5 LEGKVVVITGSSTGLGKSMAIRFATEKA---KVVVNYRSK   41 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            7899999999999999999999999998   888888864

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.6e-07  Score=59.82  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=33.1

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +||+++||||++.||.++++.|+++|.   .|+..+|+.
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga---~V~i~~r~~   37 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA---KVALVDWNL   37 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            589999999999999999999999998   888888864

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.38  E-value=2.2e-07  Score=60.83  Aligned_cols=38  Identities=18%  Similarity=0.211  Sum_probs=34.0

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .|+||+++||||++.||+++++.|+++|.   .|++.+|..
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga---~Vvi~d~~~   41 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGA---LVVVNDLGG   41 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECCCB
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEeCCc
Confidence            37899999999999999999999999998   788777653

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.37  E-value=1.3e-07  Score=60.36  Aligned_cols=37  Identities=22%  Similarity=0.375  Sum_probs=33.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.+|.++||||++.||.++++.|+++|.   .|++.+|+.
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~Ga---~V~~~~r~~   44 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKSVS---HVICISRTQ   44 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSS---EEEEEESSH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEECCH
Confidence            6799999999999999999999999998   888888854

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.37  E-value=2.4e-07  Score=58.59  Aligned_cols=39  Identities=28%  Similarity=0.241  Sum_probs=32.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.|+|+||||++.||.+++++|+++|..+ .|+...|+.+
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~-~Vi~~~R~~~   40 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVE   40 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGG
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCC-EEEEEeCCHH
Confidence            35899999999999999999999998533 6777788653

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.34  E-value=4.1e-07  Score=57.04  Aligned_cols=36  Identities=19%  Similarity=0.333  Sum_probs=32.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ..+|+||||++.||.+++++|+++|+   .|++++|.+.
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~---~V~~~~~~~~   37 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGY---TVLNIDLSAN   37 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE---EEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCch
Confidence            35799999999999999999999988   8899998754

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=98.31  E-value=6.2e-07  Score=56.24  Aligned_cols=35  Identities=11%  Similarity=0.038  Sum_probs=31.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |.|+||||++.||.+++++|+++|+   .|++++|+..
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga---~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGH---QIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECChH
Confidence            6789999999999999999999998   8888888643

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=98.30  E-value=1e-06  Score=55.65  Aligned_cols=39  Identities=31%  Similarity=0.429  Sum_probs=32.5

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      .+.+++||||+|.||.+++++|.++|..  .|+.++|+..+
T Consensus         8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~--~vvl~~R~~~~   46 (259)
T d2fr1a1           8 PTGTVLVTGGTGGVGGQIARWLARRGAP--HLLLVSRSGPD   46 (259)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCS--EEEEEESSGGG
T ss_pred             CcCEEEEECCCcHHHHHHHHHHHHCCCC--EEEEEeCCccC
Confidence            3679999999999999999999999862  47777886443

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.23  E-value=5.5e-07  Score=57.31  Aligned_cols=35  Identities=20%  Similarity=0.333  Sum_probs=32.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ||.++||||++.||.++++.|+++|+   .|++.+|++
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga---~V~i~~r~~   36 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL---RVFVCARGE   36 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            68899999999999999999999998   788888864

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.20  E-value=1.8e-06  Score=54.36  Aligned_cols=38  Identities=24%  Similarity=0.365  Sum_probs=32.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHH---hCCCcceEEEEeCCCCCcc
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLR---SCPGIKNIYLLMRPKHGQD   67 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~---~g~~~~~V~~l~r~~~~~~   67 (82)
                      |+|+||||++.||.+++++|++   +|+   .|+...|+++...
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~---~V~~~~r~~~~~~   43 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQ---HLFTTCRNREQAK   43 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCS---EEEEEESCTTSCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCC---EEEEEECCHHHHH
Confidence            7899999999999999999985   445   8889999876543

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.18  E-value=7.7e-07  Score=52.53  Aligned_cols=35  Identities=31%  Similarity=0.333  Sum_probs=31.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+|.|+||+|.+|+++++.|.+.|+   +|.+.+|+++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~---~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH---EIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESSHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            5799999999999999999999999   8888899654

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=98.16  E-value=1.1e-06  Score=56.14  Aligned_cols=36  Identities=14%  Similarity=0.177  Sum_probs=31.5

Q ss_pred             ccCcEEEEEcCCC--hHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTG--FMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG--~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++||+++||||+|  .||.++++.|+++|.   .|++..|+
T Consensus         6 L~gK~alVTGass~~GIG~aiA~~la~~Ga---~Vvi~~~~   43 (297)
T d1d7oa_           6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGA---EILVGTWV   43 (297)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHHTTC---EEEEEEEH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC---EEEEEeCc
Confidence            7899999999887  899999999999998   67766653

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=7.4e-07  Score=56.54  Aligned_cols=39  Identities=18%  Similarity=0.215  Sum_probs=33.6

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHH---hCCCcceEEEEeCCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLR---SCPGIKNIYLLMRPKH   64 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~---~g~~~~~V~~l~r~~~   64 (82)
                      -++||.++||||++.||.+++++|.+   +|+   .|+..+|+.+
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~---~Vv~~~r~~~   44 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGS---VMLVSARSES   44 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTC---EEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCC---EEEEEECCHH
Confidence            47899999999999999999999986   566   8888888643

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.07  E-value=1.8e-06  Score=54.79  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=30.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |.++||||++.||.++++.|+++|.   .|+..+|++
T Consensus         2 KValITGas~GIG~aia~~la~~Ga---~V~~~~r~~   35 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGF---AVAIADYND   35 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            4579999999999999999999998   888888864

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=4.7e-06  Score=53.70  Aligned_cols=39  Identities=21%  Similarity=0.259  Sum_probs=31.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .|.|+||||++.||.++++.|+++|..+..|....|+..
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~   40 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLK   40 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGG
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChh
Confidence            356789999999999999999999986555666666543

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=98.02  E-value=4e-06  Score=52.75  Aligned_cols=38  Identities=8%  Similarity=0.083  Sum_probs=32.4

Q ss_pred             hccCcEEEEEcCCC--hHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTG--FMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG--~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++||+++||||+|  .||.+++++|.++|.   .|+...|+.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga---~Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA---QLVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC---EEEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC---EEEEEeCCh
Confidence            57899999999654  699999999999998   777777754

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.3e-06  Score=54.60  Aligned_cols=36  Identities=31%  Similarity=0.395  Sum_probs=30.7

Q ss_pred             CcEE-EEEcCCChHHHHHHHHHHHh-CCCcceEEEEeCCCC
Q psy16528         26 NRSV-FVTGGTGFMGKVLVEKLLRS-CPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~i-lItG~tG~iG~~i~~~l~~~-g~~~~~V~~l~r~~~   64 (82)
                      ||+| +||||++.||.+++++|+++ |.   .|+...|+.+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~---~Vi~~~r~~~   39 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSG---DVVLTARDVT   39 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS---EEEEEESSHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCC---EEEEEECCHH
Confidence            5666 89999999999999999987 66   8888888654

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.88  E-value=9e-06  Score=50.87  Aligned_cols=34  Identities=18%  Similarity=0.325  Sum_probs=30.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+|||||++.||.+++++|+++|.   .|+..+|+.+
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~---~Vvi~~r~~~   36 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF---RVVVHYRHSE   36 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCch
Confidence            579999999999999999999998   8888888644

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.84  E-value=1.5e-05  Score=46.78  Aligned_cols=35  Identities=23%  Similarity=0.376  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .|+|+|.|+ |++|+++++.|.+.|+   .|++++|+..
T Consensus         2 ~K~IliiGa-G~~G~~~a~~L~~~g~---~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGS-GFVTRPTLDVLTDSGI---KVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTC---EEEEEESCHH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEECChH
Confidence            589999887 9999999999999988   8999998643

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.82  E-value=8.1e-06  Score=51.63  Aligned_cols=35  Identities=14%  Similarity=0.003  Sum_probs=31.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +++||||++.||..+++.|+++|+   .|.+.+|+.+.
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga---~V~i~~r~~~~   36 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH---TVACHDESFKQ   36 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC---EEEECCGGGGS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCHHH
Confidence            689999999999999999999998   88888876543

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=97.80  E-value=2.5e-05  Score=49.17  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=27.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +.|+||||++.||.+++++|+++|+   .|+...+
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga---~V~i~~~   33 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGC---KVLVNYA   33 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC---EEEEEES
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeC
Confidence            3689999999999999999999988   6766544

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=2.1e-05  Score=41.97  Aligned_cols=38  Identities=21%  Similarity=0.257  Sum_probs=33.0

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ++.+|+|+||+|.+|...+..+...|.   +|++.++++++
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~---~Vi~~t~s~~k   68 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGY---QVVAVSGREST   68 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTC---CEEEEESCGGG
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCC---eEEEEECCHHH
Confidence            578999999999999999998888877   88888886654

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.69  E-value=1.4e-05  Score=50.27  Aligned_cols=36  Identities=17%  Similarity=0.251  Sum_probs=28.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCc----ceEEEEeCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGI----KNIYLLMRPK   63 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~----~~V~~l~r~~   63 (82)
                      .|+||||++.||+++++.|+++|..+    ..|+..+|+.
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~   42 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA   42 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCH
Confidence            47999999999999999999998741    1366777753

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=97.65  E-value=5e-05  Score=47.82  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=27.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .++||||++.||.++++.|+++|.   .|+...|.
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga---~V~i~~~~   35 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGY---AVCLHYHR   35 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC---EEEEEeCC
Confidence            468999999999999999999998   77776664

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.57  E-value=0.0001  Score=43.22  Aligned_cols=36  Identities=31%  Similarity=0.315  Sum_probs=28.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++|.|.||||++|..+++.|.+..+...++..+..+
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~   38 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASA   38 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeec
Confidence            679999999999999999998765555566665543

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=8.6e-05  Score=43.81  Aligned_cols=37  Identities=16%  Similarity=0.269  Sum_probs=29.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhC-CCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSC-PGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g-~~~~~V~~l~r~~   63 (82)
                      ++|.|.||||++|+.+++.|++.. ..+.+++.+.++.
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~   39 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ   39 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccc
Confidence            579999999999999999887752 3556788777654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.46  E-value=9.5e-05  Score=42.99  Aligned_cols=35  Identities=26%  Similarity=0.376  Sum_probs=31.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|.|.||.|.+|+.+++.|.+.|+   .|.+.+|...
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~---~V~~~d~~~~   44 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY---PISILDREDW   44 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC---CEEEECTTCG
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC---CcEecccccc
Confidence            6899999999999999999999998   7888888654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.45  E-value=0.00011  Score=41.92  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=29.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|+|.|+ |.+|+++++.|.+.|+   .|.++++++
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~---~v~vid~d~   33 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGH---DIVLIDIDK   33 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC---CcceecCCh
Confidence            58999998 9999999999999988   788888754

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.00018  Score=41.75  Aligned_cols=34  Identities=18%  Similarity=0.290  Sum_probs=30.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+|+|.|+ |.+|+.++..|.+.|+   .|..+.|.+.
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~---~V~~~~r~~~   34 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGH---EVQGWLRVPQ   34 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC---ceEEEEcCHH
Confidence            68999988 9999999999999998   8899988764

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.42  E-value=0.00019  Score=42.35  Aligned_cols=36  Identities=17%  Similarity=0.283  Sum_probs=27.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhC-CCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSC-PGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g-~~~~~V~~l~r~   62 (82)
                      ++|.|.|||||.|+.+++.|++.. +.+.++..++.+
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~   37 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTS   37 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESS
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccc
Confidence            579999999999999999888753 345567666543

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.37  E-value=0.00014  Score=44.07  Aligned_cols=38  Identities=34%  Similarity=0.426  Sum_probs=28.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      .+|.|.||||++|..+++.|.+. +.+..+...+++...
T Consensus         2 ikVaIvGATGyvG~eLirlL~~H-P~~ei~~l~s~~~aG   39 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNH-PEAKITYLSSRTYAG   39 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHC-TTEEEEEEECSTTTT
T ss_pred             eEEEEECCCcHHHHHHHHHHHhC-CCceEEEeeccccCC
Confidence            47999999999999999988876 556444454554433

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.32  E-value=0.00019  Score=42.33  Aligned_cols=36  Identities=31%  Similarity=0.376  Sum_probs=27.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      |-+|.|.|||||+|..+++.|.+......++..++.
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s   36 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLAS   36 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecc
Confidence            357999999999999999988776434556665543

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.30  E-value=0.0002  Score=43.29  Aligned_cols=39  Identities=23%  Similarity=0.393  Sum_probs=28.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ..+|.|.||||+.|..+++.|.+. +.+..+...+++...
T Consensus         5 kikVaIlGATGyvG~elirLL~~H-P~~ei~~l~S~~~aG   43 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANH-PQFRIKVMTADRKAG   43 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTC-SSEEEEEEECSTTTT
T ss_pred             ccEEEEECcccHHHHHHHHHHHhC-CCceEEEEeccccCC
Confidence            458999999999999999999987 556444444444333

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=97.24  E-value=0.00032  Score=41.88  Aligned_cols=38  Identities=26%  Similarity=0.331  Sum_probs=32.8

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ++.+|||+||+|.+|...++.....|.   +|++.++++++
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga---~Viat~~s~~k   60 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGY---DVVASTGNREA   60 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTC---CEEEEESSSST
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCC---ceEEEecCHHH
Confidence            356799999999999999999999987   88888887654

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.16  E-value=0.00039  Score=41.68  Aligned_cols=27  Identities=26%  Similarity=0.560  Sum_probs=23.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcc
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIK   54 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~   54 (82)
                      .+|.|.|||||.|..+++.|... +.+.
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~H-P~~e   28 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRH-PHMT   28 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHC-TTEE
T ss_pred             cEEEEECcccHHHHHHHHHHHhC-CCCc
Confidence            47999999999999999998887 5553

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.04  E-value=0.00045  Score=44.77  Aligned_cols=35  Identities=20%  Similarity=0.280  Sum_probs=29.2

Q ss_pred             CcEEEEEc--CCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTG--GTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG--~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +|.+||||  ++..||.++++.|.++|.   .|+...+..
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA---~V~i~~~~~   38 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNV---KIIFGIWPP   38 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTC---EEEEEECGG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCC---EEEEEeCch
Confidence            68899999  567999999999999998   677666543

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.98  E-value=0.00065  Score=40.23  Aligned_cols=38  Identities=13%  Similarity=0.131  Sum_probs=32.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++.+|+|+||+|-+|...+..+...|.   +|++.++++.
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~---~vi~~~~~~~   63 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMGL---RVLAAASRPE   63 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTC---EEEEEESSGG
T ss_pred             CCCCEEEEEeccccchhhhhhhhccccc---cccccccccc
Confidence            3578999999999999999998888876   7888887654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00055  Score=41.15  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=31.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      +..|+|+||+|.+|...++.....|.   +|++++++++.
T Consensus        32 ~~~vlV~gasGGVG~~aiQlAk~~Ga---~Via~~~~~~k   68 (177)
T d1o89a2          32 DGEIVVTGASGGVGSTAVALLHKLGY---QVVAVSGREST   68 (177)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHTTC---CEEEEESCGGG
T ss_pred             CCcEEEEEccccchHHHHHHHHHcCC---CeEEEecchhH
Confidence            35899999999999999999999988   78888886554

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.97  E-value=0.00053  Score=41.27  Aligned_cols=38  Identities=24%  Similarity=0.251  Sum_probs=32.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ++.+|||+||+|.+|...++.....|.   +|++.++++.+
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga---~Viat~~s~~k   68 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKRGY---TVEASTGKAAE   68 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHTTC---CEEEEESCTTC
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHcCC---ceEEecCchHH
Confidence            367899999999999999999888887   78888876554

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.94  E-value=0.0009  Score=39.15  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=30.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|.|.||+|.+|..++..|..++ -+.++..+++.+
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~-l~~el~L~D~~~   36 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEP-FMKDLVLIGREH   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCT-TCCEEEEEECGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCC-cccccccccchh
Confidence            579999999999999999988885 245888888764

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.0019  Score=38.49  Aligned_cols=40  Identities=15%  Similarity=0.099  Sum_probs=32.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCc
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQ   66 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~   66 (82)
                      +++++|+|.|+ |..|++++..|.+.|.  ..++.+.|..+..
T Consensus        16 l~~k~vlIlGa-GGaarai~~al~~~g~--~~i~i~nR~~~~~   55 (182)
T d1vi2a1          16 IKGKTMVLLGA-GGASTAIGAQGAIEGL--KEIKLFNRRDEFF   55 (182)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--SEEEEEECSSTTH
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHhhcCC--ceEeeeccchHHH
Confidence            57899999998 6679999999999854  5888999976543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00096  Score=35.83  Aligned_cols=36  Identities=22%  Similarity=0.299  Sum_probs=30.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |++|+|+|.|. |-.|..+++.|.++|.   .|++.+...
T Consensus         3 ~~~K~v~ViGl-G~sG~s~a~~L~~~g~---~v~~~D~~~   38 (93)
T d2jfga1           3 YQGKNVVIIGL-GLTGLSCVDFFLARGV---TPRVMDTRM   38 (93)
T ss_dssp             CTTCCEEEECC-SHHHHHHHHHHHHTTC---CCEEEESSS
T ss_pred             cCCCEEEEEeE-CHHHHHHHHHHHHCCC---EEEEeeCCc
Confidence            68999999988 6689999999999988   677777643

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.91  E-value=0.00047  Score=41.05  Aligned_cols=37  Identities=14%  Similarity=0.102  Sum_probs=32.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      -+|.+|+|+||+|.+|...+......|.   +|+++++++
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga---~vi~~~~~~   64 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKGC---KVVGAAGSD   64 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccCC---EEEEeCCCH
Confidence            3588999999999999999999998887   888888754

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00055  Score=40.42  Aligned_cols=36  Identities=19%  Similarity=0.135  Sum_probs=30.9

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +|.+|+|+||+|.+|...+..+...|.   +|+++++++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~---~vi~~~~~~   63 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGL---KILGTAGTE   63 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCEEEEEeccccccccccccccccCc---ccccccccc
Confidence            578999999999999999999888876   788877653

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00077  Score=39.68  Aligned_cols=37  Identities=5%  Similarity=0.045  Sum_probs=32.0

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+.+|+|+||+|.+|...+..+...|.   +|++.++++.
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga---~Vi~~~~s~~   64 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGA---KLIGTVGTAQ   64 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTC---EEEEEESSHH
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCC---eEeecccchH
Confidence            478999999999999999999998887   8888877643

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.0024  Score=37.25  Aligned_cols=36  Identities=25%  Similarity=0.236  Sum_probs=28.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++|.|+|++|.+|++++..|..+..-..++..++..
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            579999999999999998876552234578888764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.63  E-value=0.0016  Score=37.59  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=29.7

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ++||+|+|.|| |.+|..-++.|++.|.   .|+.++.
T Consensus        11 l~gkrvLViGg-G~va~~ka~~Ll~~GA---~VtVvap   44 (150)
T d1kyqa1          11 LKDKRILLIGG-GEVGLTRLYKLMPTGC---KLTLVSP   44 (150)
T ss_dssp             CTTCEEEEEEE-SHHHHHHHHHHGGGTC---EEEEEEE
T ss_pred             eCCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEeC
Confidence            68999999999 8899999999999988   6666653

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0016  Score=39.40  Aligned_cols=34  Identities=24%  Similarity=0.416  Sum_probs=30.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|.|.|+ |.+|+.|+..++..|+   .|+..+++++
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~~G~---~V~l~D~~~~   38 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAATGH---TVVLVDQTED   38 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSCHH
T ss_pred             EEEEEECc-CHHHHHHHHHHHhCCC---cEEEEECChH
Confidence            68999998 9999999999999998   8999888754

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.62  E-value=0.0022  Score=37.30  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=28.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|.|.|. |.+|+.+++.|.+.|+   +|++.+|++
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~---~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGH---YLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC---EEEEEECCc
Confidence            56888855 9999999999999988   888888863

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.61  E-value=0.0031  Score=35.93  Aligned_cols=37  Identities=27%  Similarity=0.396  Sum_probs=30.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .||+|+|.|| |++|-.++..|.+.++++ +|+.+.+.+
T Consensus         1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~-~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGG-GTGGATAAKYIKLADPSI-EVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCTTS-EEEEECSCS
T ss_pred             CCCcEEEECc-cHHHHHHHHHHHHcCCCC-cEEEEECCC
Confidence            4789999886 799999999999997655 677777755

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.46  E-value=0.0051  Score=35.91  Aligned_cols=38  Identities=16%  Similarity=0.121  Sum_probs=31.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      -.|.+|+|.|+ |.+|...+..+...|.   +|+++++++..
T Consensus        26 ~~g~~vlI~Ga-G~vG~~a~q~ak~~G~---~vi~~~~~~~k   63 (168)
T d1piwa2          26 GPGKKVGIVGL-GGIGSMGTLISKAMGA---ETYVISRSSRK   63 (168)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHHTC---EEEEEESSSTT
T ss_pred             CCCCEEEEECC-CCcchhHHHHhhhccc---cccccccchhH
Confidence            35789999986 8999998888888876   78888887654

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.46  E-value=0.0028  Score=37.22  Aligned_cols=36  Identities=19%  Similarity=0.195  Sum_probs=30.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +|.+|+|+||+|.+|...+..+...|.   .|++.++++
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~---~vi~~~~~~   60 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGA---RIYTTAGSD   60 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTC---EEEEEESSH
T ss_pred             CCCEEEEECCCCCcccccchhhccccc---cceeeeccc
Confidence            478999999999999999999988877   777777643

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.39  E-value=0.0041  Score=36.12  Aligned_cols=35  Identities=31%  Similarity=0.400  Sum_probs=28.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|+|.| .|.+|..+++.|.+.|+.+ +|++.+|++
T Consensus         2 k~I~IIG-~G~mG~sla~~L~~~g~~~-~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVG-VGFMGGSFAKSLRRSGFKG-KIYGYDINP   36 (171)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHHTTCCS-EEEEECSCH
T ss_pred             CEEEEEc-cCHHHHHHHHHHHhcCCCe-EEEEEECCh
Confidence            4699996 6999999999999998644 688888754

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=96.38  E-value=0.0051  Score=36.80  Aligned_cols=25  Identities=24%  Similarity=0.385  Sum_probs=22.0

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHh
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRS   49 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~   49 (82)
                      +..+|.||||+|.||.+++..|++.
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g   47 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASG   47 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcC
Confidence            3458999999999999999998875

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=96.37  E-value=0.0043  Score=36.02  Aligned_cols=34  Identities=18%  Similarity=0.176  Sum_probs=28.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +|.|+|++|.+|++++..+..++ -+.++..++..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~-l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRD-IADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-CCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCC-CCCEEEEEecC
Confidence            78999999999999999999885 34578877763

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.32  E-value=0.002  Score=36.18  Aligned_cols=32  Identities=22%  Similarity=0.256  Sum_probs=25.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      |+++|.|. |-+|+++++.|.+.|+   .|++++.+
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~---~vvvid~d   32 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGH---EVLAVDIN   32 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTC---CCEEEESC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC---eEEEecCc
Confidence            45777766 8899999999999988   67777654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.31  E-value=0.0047  Score=35.92  Aligned_cols=33  Identities=15%  Similarity=0.068  Sum_probs=29.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|.|.|+ |-+|..++..|.+.|+   +|.+.+|++
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~~G~---~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLALKGQ---SVLAWDIDA   34 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            78999998 8999999999999998   899998854

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.31  E-value=0.0048  Score=36.28  Aligned_cols=37  Identities=14%  Similarity=0.116  Sum_probs=30.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++|+|.|+ |..+++++..|.+.|.   .|+.+.|..+
T Consensus        16 ~~~k~vlIlGa-GGaarai~~al~~~g~---~i~I~nRt~~   52 (170)
T d1nyta1          16 RPGLRILLIGA-GGASRGVLLPLLSLDC---AVTITNRTVS   52 (170)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSHH
T ss_pred             CCCCEEEEECC-cHHHHHHHHHhcccce---EEEeccchHH
Confidence            56899999997 6679999999999975   6888888643

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.30  E-value=0.0047  Score=36.30  Aligned_cols=37  Identities=24%  Similarity=0.466  Sum_probs=31.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +++++|+|.|+ |-+|..+++.|...|.  ..++...|..
T Consensus        22 l~~~~ilviGa-G~~g~~v~~~L~~~g~--~~i~v~nRt~   58 (159)
T d1gpja2          22 LHDKTVLVVGA-GEMGKTVAKSLVDRGV--RAVLVANRTY   58 (159)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHHCC--SEEEEECSSH
T ss_pred             cccCeEEEECC-CHHHHHHHHHHHhcCC--cEEEEEcCcH
Confidence            67899999998 9999999999999964  4788888863

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0056  Score=37.91  Aligned_cols=35  Identities=23%  Similarity=0.407  Sum_probs=28.7

Q ss_pred             ccCcEEEEEcC----------------CChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGG----------------TGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~----------------tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ++|++||||+|                ||-.|.+|++.+.++|+   .|..+..
T Consensus         4 l~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga---~V~li~g   54 (223)
T d1u7za_           4 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGA---NVTLVSG   54 (223)
T ss_dssp             TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTC---EEEEEEC
T ss_pred             cCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCC---chhhhhc
Confidence            67889999865                68999999999999999   5555544

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.23  E-value=0.0018  Score=37.88  Aligned_cols=25  Identities=28%  Similarity=0.329  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSC   50 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g   50 (82)
                      .++|.|+||+|++|++++..|....
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcc
Confidence            4589999999999999999998874

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.23  E-value=0.0021  Score=38.64  Aligned_cols=34  Identities=21%  Similarity=0.248  Sum_probs=29.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|.|.|+ |.+|+.++..++..|+   .|+..+++++
T Consensus         5 ~~vaViGa-G~mG~~iA~~~a~~G~---~V~l~D~~~~   38 (186)
T d1wdka3           5 KQAAVLGA-GIMGGGIAYQSASKGT---PILMKDINEH   38 (186)
T ss_dssp             SSEEEECC-HHHHHHHHHHHHHTTC---CEEEECSSHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC---eEEEEECCHH
Confidence            57899998 9999999999999998   7888888654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.21  E-value=0.0047  Score=35.84  Aligned_cols=35  Identities=26%  Similarity=0.190  Sum_probs=28.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+|.|+||+|.+|++++..|..++ -+.++..++.+
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~-~~~elvLiDi~   35 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSP-LVSRLTLYDIA   35 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCT-TCSEEEEEESS
T ss_pred             CeEEEECCCChHHHHHHHHHHhCC-ccceEEEEecc
Confidence            379999999999999999888875 35688888764

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=96.19  E-value=0.0039  Score=36.67  Aligned_cols=37  Identities=24%  Similarity=0.362  Sum_probs=28.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .|+|.|.|+||.||+..+.-+.+....+ +|++++-..
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~lsa~~   38 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRY-QVIALTANR   38 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGE-EEEEEEESS
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCc-EEEEEEeCC
Confidence            4789999999999999998877753223 677776543

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.14  E-value=0.0037  Score=36.42  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSC   50 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g   50 (82)
                      .++|.|+||+|.+|++++..|+..+
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~   27 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGS   27 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTT
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHH
Confidence            3589999999999999999988653

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.08  E-value=0.0073  Score=35.28  Aligned_cols=37  Identities=16%  Similarity=0.201  Sum_probs=29.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.++|.|.|+ |.+|+.++..|...+  +.+++.++..+.
T Consensus         6 k~~KI~IIGa-G~VG~~lA~~l~~~~--~~el~L~D~~~~   42 (154)
T d1pzga1           6 RRKKVAMIGS-GMIGGTMGYLCALRE--LADVVLYDVVKG   42 (154)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHT--CCEEEEECSSSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCC--CceEEEEEeccc
Confidence            4578999997 999999998888774  447888876554

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.0085  Score=35.21  Aligned_cols=36  Identities=17%  Similarity=0.272  Sum_probs=27.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|.|.|+||.||+..+.-+.+....+ +|++++-..
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~Lsa~~   37 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHF-RVVALVAGK   37 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTE-EEEEEEESS
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCc-EEEEEEecC
Confidence            579999999999999999877763334 677776543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.05  E-value=0.0072  Score=35.06  Aligned_cols=37  Identities=14%  Similarity=0.216  Sum_probs=30.5

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.++|.|.|+ |++|..++..|+.++. +.+++.+++.+
T Consensus         4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~-~~elvL~D~~~   40 (146)
T d1ez4a1           4 NHQKVVLVGD-GAVGSSYAFAMAQQGI-AEEFVIVDVVK   40 (146)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCC-CcEEEEeeccc
Confidence            3578999995 9999999999999962 45899998754

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=95.95  E-value=0.0056  Score=35.99  Aligned_cols=37  Identities=27%  Similarity=0.341  Sum_probs=30.1

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++++|+|.|+ |..+++++..|.+.|.  ..|+.+.|+.+
T Consensus        16 ~~~~vlIlGa-GGaarai~~aL~~~g~--~~I~I~nR~~~   52 (167)
T d1npya1          16 KNAKVIVHGS-GGMAKAVVAAFKNSGF--EKLKIYARNVK   52 (167)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTC--CCEEEECSCHH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEecccHH
Confidence            5788999988 6679999999999964  47888888644

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.95  E-value=0.0071  Score=35.07  Aligned_cols=37  Identities=27%  Similarity=0.372  Sum_probs=30.5

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+++|.|.|+ |.+|++++..|+..+. +.++..+++.+
T Consensus         5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l-~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGA-GFVGASYVFALMNQGI-ADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhcCC-CceEEEEeecc
Confidence            3578999997 9999999999999853 55888888754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.91  E-value=0.013  Score=32.66  Aligned_cols=35  Identities=14%  Similarity=0.270  Sum_probs=28.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++|.| .|++|-.++..|.+.|.   +|..+.+.+.
T Consensus        30 ~~~vvIIG-gG~iG~E~A~~l~~~g~---~Vtli~~~~~   64 (121)
T d1d7ya2          30 QSRLLIVG-GGVIGLELAATARTAGV---HVSLVETQPR   64 (121)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEEESSSS
T ss_pred             CCeEEEEC-cchhHHHHHHHhhcccc---eEEEEeeccc
Confidence            57777655 58999999999999987   8888888653

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.84  E-value=0.02  Score=31.61  Aligned_cols=35  Identities=20%  Similarity=0.180  Sum_probs=28.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++++|.|| |+||-.++..|.+.|.   +|..+.+...
T Consensus        22 p~~i~IiG~-G~ig~E~A~~l~~~G~---~Vtiv~~~~~   56 (119)
T d3lada2          22 PGKLGVIGA-GVIGLELGSVWARLGA---EVTVLEAMDK   56 (119)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESSSS
T ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCC---ceEEEEeecc
Confidence            467888775 8999999999999988   7888887643

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.82  E-value=0.011  Score=33.84  Aligned_cols=37  Identities=19%  Similarity=0.161  Sum_probs=29.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ++|.|+|+ |.+|+.++..|+..+. +.++..++.++..
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l-~~el~L~Di~~~~   37 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQL-ARELVLLDVVEGI   37 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSSSH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC-CceEEEecccccc
Confidence            47999996 9999999999888852 4588888876653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.75  E-value=0.0075  Score=35.00  Aligned_cols=37  Identities=16%  Similarity=0.197  Sum_probs=30.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+|+|.|++|.+|...+..+...|.  ..|++.++++
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~--~~V~~~~~~~   63 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSG--ATIIGVDVRE   63 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTC--CEEEEEESSH
T ss_pred             CCCEEEEEeccccceeeeeeccccccc--ccccccccch
Confidence            477999999999999999998888864  3778777654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.73  E-value=0.017  Score=31.63  Aligned_cols=35  Identities=23%  Similarity=0.370  Sum_probs=28.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++++|.|| |++|..++..|.+.|.   +|..+.|.+.
T Consensus        22 p~~v~IiGg-G~ig~E~A~~l~~~G~---~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGG-GYIGIELGTAYANFGT---KVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESSSS
T ss_pred             CCeEEEECC-Cccceeeeeeeccccc---EEEEEEecce
Confidence            367877765 8999999999999987   7888887654

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.72  E-value=0.031  Score=31.65  Aligned_cols=53  Identities=13%  Similarity=0.165  Sum_probs=34.9

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCccHHHHHHHHHhC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINA   78 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~~~~~~~~~~~~   78 (82)
                      .+|+||.|+|.||. --+-.-+..|.+-..   .|+.+.|.+.-......++++...
T Consensus        30 ~~frgk~V~VvGgG-dsA~e~A~~L~~~a~---~V~li~r~~~~ra~~~~~~~l~~~   82 (130)
T d1vdca2          30 PIFRNKPLAVIGGG-DSAMEEANFLTKYGS---KVYIIHRRDAFRASKIMQQRALSN   82 (130)
T ss_dssp             GGGTTSEEEEECCS-HHHHHHHHHHTTTSS---EEEEECSSSSCCSCHHHHHHHHTC
T ss_pred             HHhCCCEEEEEcCc-hHHHHHHHHHhCCCC---cEEEEEeccccccchhhhhccccC
Confidence            37999999999994 444455555555533   899999876544444455555544

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.68  E-value=0.0055  Score=37.81  Aligned_cols=38  Identities=24%  Similarity=0.252  Sum_probs=30.8

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ..+++++|+|.| .|.+|++++..|.+.|.  ..++.++.+
T Consensus        26 ~kL~~~~VliiG-~GglGs~va~~La~~Gv--g~i~lvD~D   63 (247)
T d1jw9b_          26 EALKDSRVLIVG-LGGLGCAASQYLASAGV--GNLTLLDFD   63 (247)
T ss_dssp             HHHHHCEEEEEC-CSHHHHHHHHHHHHHTC--SEEEEECCC
T ss_pred             HHHhCCCEEEEC-CCHHHHHHHHHHHHcCC--CeEEEECCc
Confidence            347789999999 56689999999999964  578887754

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.66  E-value=0.0065  Score=35.75  Aligned_cols=38  Identities=16%  Similarity=0.285  Sum_probs=30.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ..|.+|+|+|+ |.+|...+..+...|.  ..|+++++++.
T Consensus        27 ~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga--~~Vi~~~~~~~   64 (182)
T d1vj0a2          27 FAGKTVVIQGA-GPLGLFGVVIARSLGA--ENVIVIAGSPN   64 (182)
T ss_dssp             CBTCEEEEECC-SHHHHHHHHHHHHTTB--SEEEEEESCHH
T ss_pred             CCCCEEEEECC-Cccchhheeccccccc--ccccccccccc
Confidence            35789999986 8999999988888864  47888887543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.63  E-value=0.018  Score=32.11  Aligned_cols=33  Identities=12%  Similarity=0.185  Sum_probs=26.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++++|.| .|+||-.++..|.+.|.   +|..+.|+.
T Consensus        21 ~~vvIIG-gG~iG~E~A~~l~~lG~---~Vtii~~~~   53 (122)
T d1h6va2          21 GKTLVVG-ASYVALECAGFLAGIGL---DVTVMVRSI   53 (122)
T ss_dssp             CSEEEEC-CSHHHHHHHHHHHHTTC---CEEEEESSS
T ss_pred             CeEEEEC-CCccHHHHHHHHhhcCC---eEEEEEech
Confidence            5677766 48999999999999988   666667753

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.016  Score=33.60  Aligned_cols=38  Identities=13%  Similarity=0.086  Sum_probs=29.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      -.|.+|+|.|+ |.+|...+..+...|.   .++++++++..
T Consensus        29 ~~G~~VlI~Ga-G~vG~~a~qlak~~Ga---~~i~~~~~~~~   66 (168)
T d1uufa2          29 GPGKKVGVVGI-GGLGHMGIKLAHAMGA---HVVAFTTSEAK   66 (168)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESSGGG
T ss_pred             CCCCEEEEecc-chHHHHHHHHhhcccc---cchhhccchhH
Confidence            35789999986 8899999988888876   56677765443

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.024  Score=31.56  Aligned_cols=34  Identities=15%  Similarity=0.272  Sum_probs=28.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++++|.|| |++|-.++..|.+.|.   +|+.+.|.+
T Consensus        22 pk~vvIvGg-G~iG~E~A~~l~~~G~---~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGA-GYIAVEMAGILSALGS---KTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSS
T ss_pred             CCEEEEEcC-CccHHHHHHHHhcCCc---EEEEEeecc
Confidence            367888775 6999999999999987   888888864

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=95.55  E-value=0.024  Score=33.52  Aligned_cols=38  Identities=21%  Similarity=0.230  Sum_probs=30.0

Q ss_pred             cCcEEEE-EcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         25 QNRSVFV-TGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        25 ~~~~ilI-tG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      .|.+++| +||+|.+|...++.....|.   +|+++.|....
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga---~vI~~v~~~~~   66 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNF---NSISVIRDRPN   66 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTC---EEEEEECCCTT
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCC---eEEEEEecccc
Confidence            3566666 69999999999999888877   78888776543

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.53  E-value=0.018  Score=33.04  Aligned_cols=35  Identities=23%  Similarity=0.354  Sum_probs=28.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++|.|.|+ |.+|..++..|...+  +.++..++..+.
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~--l~dl~l~D~~~~   36 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKE--LGDIVLLDIVEG   36 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECSSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCC--cceEEEEeeccc
Confidence            58999996 999999999988884  447888876544

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.50  E-value=0.022  Score=32.67  Aligned_cols=37  Identities=19%  Similarity=0.226  Sum_probs=28.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ++|.|.|+ |.+|+.++..++..+ -+.++..+++.+..
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~-l~~el~L~D~~~~~   38 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQ-TANELVLIDVFKEK   38 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTT-CSSEEEEECCC---
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeccCCc
Confidence            46888897 999999999998885 35689999887654

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=95.36  E-value=0.0095  Score=34.22  Aligned_cols=34  Identities=26%  Similarity=0.441  Sum_probs=27.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|.+.|+ |-+|+++++.|++.+.  ..|++.+|++
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~--~~i~v~~r~~   34 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGG--YRIYIANRGA   34 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCS--CEEEEECSSH
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC--CcEEEEeCCh
Confidence            46888866 9999999999999973  2888888764

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.35  E-value=0.021  Score=31.57  Aligned_cols=34  Identities=18%  Similarity=0.432  Sum_probs=28.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++++|.|| |++|-.++..|.+.|.   +|+.+.|.+
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~---~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGI---DSYIFARGN   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTC---EEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccc---cceeeehhc
Confidence            467877664 8999999999999987   888888864

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.34  E-value=0.024  Score=31.52  Aligned_cols=34  Identities=15%  Similarity=0.258  Sum_probs=28.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++++|.|| |++|-.++..|.+.|.   +|..+.+.+
T Consensus        23 p~~~vIiG~-G~ig~E~A~~l~~lG~---~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGG-GIIGLEMGSVYSRLGS---KVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSS
T ss_pred             CCeEEEECC-CchHHHHHHHHHhhCc---ceeEEEecc
Confidence            367878765 8999999999999988   888888754

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.33  E-value=0.01  Score=34.25  Aligned_cols=36  Identities=17%  Similarity=0.089  Sum_probs=28.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      -.+.+|+|.|+ |.+|...+..+...|.   +|+++++++
T Consensus        26 ~~g~~VlV~Ga-G~vG~~~~~~ak~~G~---~Vi~~~~~~   61 (166)
T d1llua2          26 RPGQWVAISGI-GGLGHVAVQYARAMGL---HVAAIDIDD   61 (166)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeec-cccHHHHHHHHHHcCC---ccceecchh
Confidence            35789999876 9999998888877765   788888754

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.28  E-value=0.0073  Score=35.66  Aligned_cols=37  Identities=30%  Similarity=0.305  Sum_probs=29.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++++|+|.|+ |..+++++..|.+.+.   .|+.+.|+.+
T Consensus        16 ~~~k~vlIlGa-GGaarai~~aL~~~~~---~i~I~nR~~~   52 (171)
T d1p77a1          16 RPNQHVLILGA-GGATKGVLLPLLQAQQ---NIVLANRTFS   52 (171)
T ss_dssp             CTTCEEEEECC-SHHHHTTHHHHHHTTC---EEEEEESSHH
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHcccCc---eeeeccchHH
Confidence            56889999877 5569999999987543   8999999743

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.28  E-value=0.022  Score=32.95  Aligned_cols=35  Identities=14%  Similarity=0.218  Sum_probs=28.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|.|+|+ |.+|+.++..|+.++ -+.+++.+++++
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~-~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQG-VADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSH
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcC-CCceEEEEeccc
Confidence            68999995 999999999999986 245788887754

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.25  E-value=0.017  Score=33.28  Aligned_cols=35  Identities=17%  Similarity=0.155  Sum_probs=28.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|.|.|+ |.+|.+++..+..++ -+.++..++..+
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~-~~~elvL~Di~~   35 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNL-DVDEIALVDIAE   35 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHS-CCSEEEEECSSH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcC-cCceEEEEeccc
Confidence            57899996 999999999998885 456888888754

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.15  E-value=0.032  Score=30.56  Aligned_cols=33  Identities=21%  Similarity=0.197  Sum_probs=27.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++++|.| .|++|..++..|.+.|.   +|..+.|.+
T Consensus        22 ~~vvIiG-gG~ig~E~A~~l~~~G~---~Vtlve~~~   54 (116)
T d1gesa2          22 ERVAVVG-AGYIGVELGGVINGLGA---KTHLFEMFD   54 (116)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHHHTTC---EEEEECSSS
T ss_pred             CEEEEEC-CChhhHHHHHHhhcccc---EEEEEeecc
Confidence            5777755 58999999999999987   888888865

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.11  E-value=0.016  Score=31.66  Aligned_cols=35  Identities=14%  Similarity=0.232  Sum_probs=29.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++++|+|.|+. -+|..-++.|++.|.   .|+.++..
T Consensus        10 l~~k~vlVvG~G-~va~~ka~~ll~~ga---~v~v~~~~   44 (113)
T d1pjqa1          10 LRDRDCLIVGGG-DVAERKARLLLEAGA---RLTVNALT   44 (113)
T ss_dssp             CBTCEEEEECCS-HHHHHHHHHHHHTTB---EEEEEESS
T ss_pred             eCCCEEEEECCC-HHHHHHHHHHHHCCC---eEEEEecc
Confidence            679999999875 589999999999987   67776653

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.074  Score=29.65  Aligned_cols=52  Identities=15%  Similarity=0.134  Sum_probs=33.3

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCCccHHHHHHHHHh
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIIN   77 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~~~~~~~~~~~~~   77 (82)
                      .+|+||+|+|.|+.-. +-.-+..|.+-.   +.|+.+.|.+........++++..
T Consensus        26 ~~~~gk~V~VvGgG~s-A~~~A~~L~~~a---~~V~li~r~~~~~~~~~~~~~~~~   77 (126)
T d1fl2a2          26 PLFKGKRVAVIGGGNS-GVEAAIDLAGIV---EHVTLLEFAPEMKADQVLQDKLRS   77 (126)
T ss_dssp             GGGBTCEEEEECCSHH-HHHHHHHHHTTB---SEEEEECSSSSCCSCHHHHHHHHT
T ss_pred             hhcCCceEEEEeCCHH-HHHHHHhhhccC---CceEEEeccccccccccccccccc
Confidence            4589999999998544 444444555543   389999987654444444555544

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.05  E-value=0.014  Score=33.74  Aligned_cols=36  Identities=22%  Similarity=0.164  Sum_probs=29.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ..+.+|+|+| +|.+|...+..+...|.   +|+++++++
T Consensus        25 ~~g~~vlV~G-~G~vG~~~~~~ak~~Ga---~vi~v~~~~   60 (170)
T d1e3ja2          25 QLGTTVLVIG-AGPIGLVSVLAAKAYGA---FVVCTARSP   60 (170)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEEc-ccccchhhHhhHhhhcc---cccccchHH
Confidence            3478999996 68999999988888875   788888754

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.01  E-value=0.042  Score=30.42  Aligned_cols=35  Identities=17%  Similarity=0.338  Sum_probs=28.6

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++++|+|. |.|++|..++..|.+.|.   .|+.+.+.+
T Consensus        29 ~~k~vvVi-GgG~iG~E~A~~l~~~g~---~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVI-GSGYIGIEAAEAFAKAGK---KVTVIDILD   63 (123)
T ss_dssp             TCCEEEEE-CCSHHHHHHHHHHHHTTC---EEEEEESSS
T ss_pred             CCCEEEEE-CChHHHHHHHHHhhccce---EEEEEEecC
Confidence            35788777 568999999999999987   788887754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.00  E-value=0.022  Score=34.08  Aligned_cols=32  Identities=16%  Similarity=0.175  Sum_probs=28.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      |+|.|. |.|++|..++..|.+.|+   +|++++.+
T Consensus         1 MkI~Vi-GlG~vGl~~a~~la~~g~---~V~g~D~n   32 (202)
T d1mv8a2           1 MRISIF-GLGYVGAVCAGCLSARGH---EVIGVDVS   32 (202)
T ss_dssp             CEEEEE-CCSTTHHHHHHHHHHTTC---EEEEECSC
T ss_pred             CEEEEE-CCCHhHHHHHHHHHhCCC---cEEEEeCC
Confidence            467787 889999999999999998   88998864

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.98  E-value=0.047  Score=29.85  Aligned_cols=38  Identities=24%  Similarity=0.324  Sum_probs=28.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++++|.|| |++|-.++..|.+.+..-..|..+.|.+.
T Consensus        20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence            478999888 99999999887776543337888887543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.97  E-value=0.041  Score=30.00  Aligned_cols=36  Identities=14%  Similarity=0.063  Sum_probs=28.6

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+++++|. |+|++|..++..|.+.|.   .|..+.|.+.
T Consensus        21 ~~~~vvVv-GgG~ig~E~A~~l~~~g~---~vt~i~~~~~   56 (121)
T d1mo9a2          21 PGSTVVVV-GGSKTAVEYGCFFNATGR---RTVMLVRTEP   56 (121)
T ss_dssp             CCSEEEEE-CCSHHHHHHHHHHHHTTC---EEEEECSSCT
T ss_pred             CCCEEEEE-CCCHHHHHHHHHHHhcch---hheEeeccch
Confidence            36788775 468999999999999987   7888887643

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.91  E-value=0.037  Score=31.67  Aligned_cols=34  Identities=21%  Similarity=0.169  Sum_probs=26.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +|.|.|++|-.|+.+++.+.+. .++..+-.+++.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~-~~~~l~~~~d~~   34 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAA-DDLTLSAELDAG   34 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHS-TTSEEEEEECTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecC
Confidence            5899999999999999988776 456555566654

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.83  E-value=0.03  Score=31.69  Aligned_cols=25  Identities=16%  Similarity=0.153  Sum_probs=22.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCP   51 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~   51 (82)
                      ++|.|.|++|-.|+.+.+.+.+.+.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~   25 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGH   25 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCC
Confidence            5799999999999999988888765

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.81  E-value=0.061  Score=31.45  Aligned_cols=38  Identities=16%  Similarity=0.127  Sum_probs=30.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++..+|.|.|+ |.+|..++..|...+. +.++..+++++
T Consensus        17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l-~~elvL~D~~~   54 (159)
T d2ldxa1          17 LSRCKITVVGV-GDVGMACAISILLKGL-ADELALVDADT   54 (159)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHTTTS-CSEEEEECSCH
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCc
Confidence            44568999996 9999999999998853 55788887653

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=94.79  E-value=0.013  Score=34.50  Aligned_cols=35  Identities=29%  Similarity=0.341  Sum_probs=27.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .+|+|.|++|-+|+.+++.+.+.. ++..+-++.|.
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~-~~~lv~~~~~~   39 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALE-GVQLGAALERE   39 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHST-TEECCCEECCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecc
Confidence            579999999999999999988873 55455566654

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.76  E-value=0.038  Score=32.03  Aligned_cols=35  Identities=17%  Similarity=0.432  Sum_probs=27.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+|.|.|+ |.+|++++..+...+  +.++..+++.+.
T Consensus         4 ~KI~IIGa-G~VG~~~a~~l~~~~--l~el~L~Di~~~   38 (150)
T d1t2da1           4 AKIVLVGS-GMIGGVMATLIVQKN--LGDVVLFDIVKN   38 (150)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTT--CCEEEEECSSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCC--CCeEEEEeccCC
Confidence            57999995 999999998777663  568888887554

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=94.73  E-value=0.024  Score=33.75  Aligned_cols=32  Identities=28%  Similarity=0.383  Sum_probs=27.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++|+|.|| |..|...+..|.++|+   +|.++.+.
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~---~V~vlE~~   32 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGT---DAVLLESS   32 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTC---CEEEECSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC---CEEEEecC
Confidence            46889998 9999999999999988   67777664

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=94.73  E-value=0.089  Score=29.27  Aligned_cols=40  Identities=28%  Similarity=0.280  Sum_probs=30.2

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      .+|++|+|+|.|| |-.+-..+..|.+-..   +|+.+.|.+.-
T Consensus        23 ~~~~~k~V~VvGg-GdsA~e~A~~L~~~a~---~V~li~r~~~~   62 (126)
T d1trba2          23 FFYRNQKVAVIGG-GNTAVEEALYLSNIAS---EVHLIHRRDGF   62 (126)
T ss_dssp             GGGTTSEEEEECS-SHHHHHHHHHHTTTSS---EEEEECSSSSC
T ss_pred             HHhCCCEEEEECC-CHHHHHHHHHHhhcCC---cEEEEeecccc
Confidence            4579999999999 5566666777766544   89999987653

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.70  E-value=0.042  Score=32.22  Aligned_cols=39  Identities=15%  Similarity=0.048  Sum_probs=31.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      ..|.+|+|.|+ |.+|...+..+...|.  .+|++++++++.
T Consensus        28 ~~g~tVlI~G~-GgvGl~ai~~ak~~G~--~~Vi~vd~~~~k   66 (176)
T d1d1ta2          28 KPGSTCVVFGL-GGVGLSVIMGCKSAGA--SRIIGIDLNKDK   66 (176)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--SEEEEECSCGGG
T ss_pred             CCCCEEEEECC-CchhHHHHHHHHHcCC--ceEEEecCcHHH
Confidence            35789999975 8999999999988864  389999886543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=94.70  E-value=0.04  Score=32.59  Aligned_cols=34  Identities=26%  Similarity=0.334  Sum_probs=28.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++|+|.|| |..|...+..|.++|+   +|.++.|..
T Consensus         6 ~~kVvVIGa-GiaGl~~A~~L~~~G~---~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGS-GVIGLSSALILARKGY---SVHILARDL   39 (268)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCcEEEECc-cHHHHHHHHHHHHCCC---CEEEEeCCC
Confidence            357888875 7899999999999988   788888753

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.66  E-value=0.039  Score=30.56  Aligned_cols=35  Identities=14%  Similarity=0.249  Sum_probs=29.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++++|.|| |++|-.++..|.+.|.   +|..+.|.+.
T Consensus        25 p~~~viiG~-G~iglE~A~~~~~~G~---~Vtvi~~~~~   59 (123)
T d1dxla2          25 PKKLVVIGA-GYIGLEMGSVWGRIGS---EVTVVEFASE   59 (123)
T ss_dssp             CSEEEESCC-SHHHHHHHHHHHHHTC---EEEEECSSSS
T ss_pred             CCeEEEEcc-chHHHHHHHHHHhcCC---eEEEEEEccc
Confidence            467777665 8999999999999987   8888888654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.62  E-value=0.036  Score=32.16  Aligned_cols=39  Identities=18%  Similarity=0.036  Sum_probs=29.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG   65 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~~   65 (82)
                      -.|.+|+|.|+ |.+|...+..+...+.  ..|+++++++..
T Consensus        27 k~GdtVlV~Ga-GG~G~~~~~~~~~~g~--~~Vi~~~~~~~k   65 (176)
T d2jhfa2          27 TQGSTCAVFGL-GGVGLSVIMGCKAAGA--ARIIGVDINKDK   65 (176)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--SEEEEECSCGGG
T ss_pred             CCCCEEEEECC-CCcHHHHHHHHHHcCC--ceEEeecCcHHH
Confidence            35789999999 5588888888888854  378888876543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.62  E-value=0.052  Score=30.30  Aligned_cols=34  Identities=12%  Similarity=0.202  Sum_probs=28.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++++|.|| |+||-.++..|.+.|.   +|+.+.+.+
T Consensus        26 p~~vvIiGg-G~IG~E~A~~~~~~G~---~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGG-GIIGLEMGTVYSTLGS---RLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHHTC---EEEEECSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHhhcCCC---EEEEEEeec
Confidence            467877765 8999999999999987   888887754

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.51  E-value=0.035  Score=31.91  Aligned_cols=35  Identities=23%  Similarity=0.202  Sum_probs=28.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+|.|.|+ |.+|++++..+..++. +.++..+++.+
T Consensus         2 ~Ki~IIGa-G~VG~~~a~~l~~~~l-~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGA-GAVGSTLAFAAAQRGI-AREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCC-CcEEEEEEecc
Confidence            47889996 9999999999998853 55888888754

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.49  E-value=0.042  Score=31.27  Aligned_cols=34  Identities=15%  Similarity=0.141  Sum_probs=27.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+|.|. |.|.+|+.+++.|+++|+   .|...++...
T Consensus         1 MkIgiI-G~G~mG~~ia~~l~~~g~---~v~~~~~~~~   34 (152)
T d1i36a2           1 LRVGFI-GFGEVAQTLASRLRSRGV---EVVTSLEGRS   34 (152)
T ss_dssp             CEEEEE-SCSHHHHHHHHHHHHTTC---EEEECCTTCC
T ss_pred             CEEEEE-cHHHHHHHHHHHHHHCCC---eEEEEcCchh
Confidence            467787 569999999999999988   7777766544

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.43  E-value=0.041  Score=32.20  Aligned_cols=38  Identities=16%  Similarity=0.003  Sum_probs=30.8

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      -.|.+|+|.|+ |.+|...+..+...|.  ..|+++++++.
T Consensus        26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~--~~Vi~~d~~~~   63 (174)
T d1p0fa2          26 TPGSTCAVFGL-GGVGFSAIVGCKAAGA--SRIIGVGTHKD   63 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTC--SEEEEECSCGG
T ss_pred             CCCCEEEEECC-CchhHHHHHHHHHcCC--ceeeccCChHH
Confidence            45789999985 8999999999998864  37888887654

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.40  E-value=0.011  Score=35.00  Aligned_cols=33  Identities=12%  Similarity=0.081  Sum_probs=26.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      .+|+|+||+|.+|...++.....|..  .|+..++
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~--~vi~~~~   64 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCS--RVVGICG   64 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCS--EEEEEES
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCc--ceecccc
Confidence            68999999999999999988778652  4555444

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.018  Score=38.75  Aligned_cols=39  Identities=23%  Similarity=0.278  Sum_probs=30.9

Q ss_pred             hhhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         21 SEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        21 ~~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ...+++++|+|.|+.| +|+.+++.|...|.  ..+..++.+
T Consensus        32 ~~~l~~~kVlvvG~Gg-lG~ei~k~L~~~Gv--g~i~lvD~D   70 (426)
T d1yovb1          32 QFLLDTCKVLVIGAGG-LGCELLKNLALSGF--RQIHVIDMD   70 (426)
T ss_dssp             HHHHHHCCEEEECSST-THHHHHHHHHTTTC--CCEEEECCC
T ss_pred             HHHHhcCeEEEECCCH-HHHHHHHHHHHcCC--CeEEEEECC
Confidence            3446788999999966 89999999999964  467776654

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=94.29  E-value=0.055  Score=32.79  Aligned_cols=34  Identities=18%  Similarity=0.253  Sum_probs=29.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ++|++|+|-| -|-+|+++++.|.+.|.   +|++.+.
T Consensus        25 L~gk~v~IqG-~G~VG~~~A~~L~~~Ga---kvvv~d~   58 (201)
T d1c1da1          25 LDGLTVLVQG-LGAVGGSLASLAAEAGA---QLLVADT   58 (201)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEECS
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHCCC---EEEEecc
Confidence            7899999976 88899999999999987   6766554

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.26  E-value=0.061  Score=30.89  Aligned_cols=37  Identities=16%  Similarity=0.018  Sum_probs=28.3

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .|.+|+|.|+ |.+|...+..+...|.  ..|++.++++.
T Consensus        28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~--~~vi~~~~~~~   64 (176)
T d2fzwa2          28 PGSVCAVFGL-GGVGLAVIMGCKVAGA--SRIIGVDINKD   64 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC--SEEEEECSCGG
T ss_pred             CCCEEEEecc-hhHHHHHHHHHHHHhc--CceEEEcccHH
Confidence            4789999987 5689999888888865  36777776544

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.25  E-value=0.051  Score=34.50  Aligned_cols=35  Identities=17%  Similarity=0.470  Sum_probs=27.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.|+|+|.| +|+.|...+..|.+.|.   .|.++.++.
T Consensus         1 k~KKI~IIG-aG~sGL~aA~~L~k~G~---~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVG-AGFSGAVIGRQLAEKGH---QVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHTTTC---EEEEEESSS
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHhCCC---CEEEEECCC
Confidence            357888876 48999999999999987   777776643

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.15  E-value=0.051  Score=30.63  Aligned_cols=40  Identities=15%  Similarity=0.260  Sum_probs=31.2

Q ss_pred             hhccCcEEEEEcCC---ChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         22 EFYQNRSVFVTGGT---GFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        22 ~~~~~~~ilItG~t---G~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+|+.++|+|.|++   +-.|..+++.|.+.+  -.+|+.+....
T Consensus         4 ~lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~--~g~v~pVnP~~   46 (129)
T d2csua1           4 YFFNPKGIAVIGASNDPKKLGYEVFKNLKEYK--KGKVYPVNIKE   46 (129)
T ss_dssp             TTTSCSEEEEETCCSCTTSHHHHHHHHHTTCC--SSEEEEECSSC
T ss_pred             HhCCCCeEEEEccCCCCCCcHHHHHHHHHHcC--CCcEEEeccCc
Confidence            46788999999998   899999999987654  12788776543

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.14  E-value=0.078  Score=31.02  Aligned_cols=38  Identities=18%  Similarity=0.177  Sum_probs=30.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.++|.|.|+ |.+|+.++..|..++ -+.++..+++.+
T Consensus        18 ~~~~KV~IIGa-G~VG~~~A~~l~~~~-l~~ElvLiD~~~   55 (160)
T d1i0za1          18 VPNNKITVVGV-GQVGMACAISILGKS-LADELALVDVLE   55 (160)
T ss_dssp             CCSSEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSCH
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcC-CCcEEEEEEecc
Confidence            44679999996 999999999999996 355888888753

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.03  E-value=0.044  Score=31.86  Aligned_cols=36  Identities=14%  Similarity=0.006  Sum_probs=27.6

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+|+|.|+ |.+|...+..+...|.  ..|++.++++
T Consensus        28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~--~~v~~~~~~~   63 (174)
T d1f8fa2          28 PASSFVTWGA-GAVGLSALLAAKVCGA--SIIIAVDIVE   63 (174)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHHTC--SEEEEEESCH
T ss_pred             CCCEEEEeCC-CHHHhhhhhccccccc--ceeeeeccHH
Confidence            5789999987 9999999988888865  2556666543

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.97  E-value=0.071  Score=30.29  Aligned_cols=35  Identities=20%  Similarity=0.153  Sum_probs=28.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|.|.|+ |.+|..++..++.++. +.++..+++++
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l-~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGF-AREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC-CCEEEEEeccc
Confidence            47899996 9999999999888853 55888888754

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.078  Score=31.45  Aligned_cols=37  Identities=16%  Similarity=0.224  Sum_probs=32.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.||+|+|.|.+..+|+-++..|.++|.   .|+......
T Consensus        37 l~Gk~vvVIGrS~iVGrPLa~lL~~~ga---tVt~~~~~t   73 (170)
T d1a4ia1          37 IAGRHAVVVGRSKIVGAPMHDLLLWNNA---TVTTCHSKT   73 (170)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC---EEEEECTTC
T ss_pred             cccceEEEEecCCccchHHHHHHHhccC---ceEEEeccc
Confidence            6899999999999999999999999987   777766543

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.88  E-value=0.06  Score=30.90  Aligned_cols=34  Identities=26%  Similarity=0.342  Sum_probs=27.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      |+|.+.| .|.+|..+++.|++.|+   .|++.+|++.
T Consensus         1 MkIgiIG-lG~MG~~~A~~L~~~G~---~V~~~d~~~~   34 (161)
T d1vpda2           1 MKVGFIG-LGIMGKPMSKNLLKAGY---SLVVSDRNPE   34 (161)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTC---EEEEECSCHH
T ss_pred             CEEEEEe-hhHHHHHHHHHHHHCCC---eEEEEeCCcc
Confidence            4577774 59999999999999998   8888888643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.042  Score=31.75  Aligned_cols=36  Identities=17%  Similarity=0.145  Sum_probs=28.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+|+|.|+ |.+|...+..+...|.  ..|++.++++
T Consensus        26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~--~~Vi~~d~~~   61 (171)
T d1pl8a2          26 LGHKVLVCGA-GPIGMVTLLVAKAMGA--AQVVVTDLSA   61 (171)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--SEEEEEESCH
T ss_pred             CCCEEEEECC-CccHHHHHHHHHHcCC--ceEEeccCCH
Confidence            4678999976 9999999988888865  3688877654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.75  E-value=0.1  Score=29.14  Aligned_cols=36  Identities=17%  Similarity=0.372  Sum_probs=29.5

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+++++|.| +|++|-.++..|.+.|.   +|..+.+.+.
T Consensus        34 ~~k~v~VIG-gG~iG~E~A~~l~~~g~---~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIG-GGYIGLEVAATAIKANM---HVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEECSSSS
T ss_pred             cCCEEEEEC-CchHHHHHHHHHHhhCc---ceeeeeeccc
Confidence            367888885 58999999999999987   7888887543

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=93.71  E-value=0.088  Score=31.16  Aligned_cols=36  Identities=17%  Similarity=0.165  Sum_probs=31.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +.||+|+|.|.+..+|+-++..|.++|.   .|+.....
T Consensus        35 l~GK~v~VIGrS~~VG~Pla~lL~~~ga---tVt~~h~~   70 (166)
T d1b0aa1          35 TFGLNAVVIGASNIVGRPMSMELLLAGC---TTTVTHRF   70 (166)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTC---EEEEECSS
T ss_pred             cccceEEEEeccccccHHHHHHHHHhhc---cccccccc
Confidence            6799999999999999999999999977   67666543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.68  E-value=0.054  Score=31.62  Aligned_cols=36  Identities=17%  Similarity=0.364  Sum_probs=28.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+|+|.|+.| .+++++..|.+.+    .|+++.|+..
T Consensus        16 ~~~k~vlIlGaGG-~arai~~aL~~~~----~i~I~nR~~~   51 (177)
T d1nvta1          16 VKDKNIVIYGAGG-AARAVAFELAKDN----NIIIANRTVE   51 (177)
T ss_dssp             CCSCEEEEECCSH-HHHHHHHHHTSSS----EEEEECSSHH
T ss_pred             cCCCEEEEECCcH-HHHHHHHHHcccc----ceeeehhhhh
Confidence            6789999998754 7999998886542    7899988644

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.66  E-value=0.089  Score=29.75  Aligned_cols=36  Identities=22%  Similarity=0.281  Sum_probs=28.6

Q ss_pred             CcEEEEE-cCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVT-GGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilIt-G~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++.++|. .+.||+|..++..|.+.|.   +|..+.+.+.
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~---~Vtlv~~~~~   75 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGH---EVTIVSGVHL   75 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTC---EEEEEESSCT
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCC---eEEEEecCCc
Confidence            4455554 4679999999999999998   8888887653

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=93.65  E-value=0.097  Score=30.37  Aligned_cols=36  Identities=22%  Similarity=0.283  Sum_probs=24.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE-eCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL-MRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l-~r~~   63 (82)
                      ..++.|.| +|.+|+.++..+++..+.+ +++++ +|+.
T Consensus         4 kirvaIIG-aG~ig~~~~~~~l~~~~~~-el~avas~~~   40 (157)
T d1nvmb1           4 KLKVAIIG-SGNIGTDLMIKVLRNAKYL-EMGAMVGIDA   40 (157)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHHHCSSE-EEEEEECSCT
T ss_pred             CcEEEEEc-CcHHHHHHHHHHHhhCCcc-eEEEEEecch
Confidence            35799999 9999997665556653434 55555 5544

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.64  E-value=0.074  Score=31.18  Aligned_cols=32  Identities=22%  Similarity=0.267  Sum_probs=26.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      |+|.|.|+ |-+|++++..|.+.|+   .|+...|.
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~---~V~l~~r~   32 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGN---EVRIWGTE   32 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC---EEEEECCG
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC---EEEEEEec
Confidence            57888887 7789999999999988   78777774

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.60  E-value=0.036  Score=32.48  Aligned_cols=37  Identities=19%  Similarity=0.038  Sum_probs=28.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      -+|.+|+|.|+ |.+|...+..+...|.  ..|+++++++
T Consensus        26 ~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga--~~Vi~~d~~~   62 (174)
T d1jqba2          26 EMGSSVVVIGI-GAVGLMGIAGAKLRGA--GRIIGVGSRP   62 (174)
T ss_dssp             CTTCCEEEECC-SHHHHHHHHHHHTTTC--SCEEEECCCH
T ss_pred             CCCCEEEEEcC-Ccchhhhhhhhhcccc--cccccccchh
Confidence            35789999975 9999998888887754  3688877654

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.51  E-value=0.075  Score=30.54  Aligned_cols=33  Identities=18%  Similarity=0.311  Sum_probs=27.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|.+. |.|.+|+.+++.|++.|+   .|.+.+|++
T Consensus         2 ~kIg~I-GlG~MG~~iA~~L~~~g~---~v~~~d~~~   34 (162)
T d3cuma2           2 KQIAFI-GLGHMGAPMATNLLKAGY---LLNVFDLVQ   34 (162)
T ss_dssp             CEEEEE-CCSTTHHHHHHHHHHTTC---EEEEECSSH
T ss_pred             CEEEEE-EEHHHHHHHHHHHHHCCC---eEEEEECch
Confidence            357777 679999999999999998   888888753

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.36  E-value=0.04  Score=31.45  Aligned_cols=35  Identities=20%  Similarity=0.084  Sum_probs=27.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+|+|.|+ |-+|...+..+...|.   +|++.++++
T Consensus        27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~---~v~~~~~~~   61 (168)
T d1rjwa2          27 PGEWVAIYGI-GGLGHVAVQYAKAMGL---NVVAVDIGD   61 (168)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CCCEEEEeec-ccchhhhhHHHhcCCC---eEeccCCCH
Confidence            4788999865 8899988888887766   788877654

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.32  E-value=0.079  Score=30.40  Aligned_cols=36  Identities=14%  Similarity=0.122  Sum_probs=28.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +++|+|.|| |..|-..+..|.++|..  .|.++.|.+.
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~--~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGYS--DITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTCC--CEEEEESSSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCCC--eEEEEEecCc
Confidence            578888876 78999999999999862  4777777653

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.23  E-value=0.14  Score=28.97  Aligned_cols=34  Identities=32%  Similarity=0.266  Sum_probs=24.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +++|+|.| .|++|-.++..|.+.|.++ .|+.+.+
T Consensus         3 ~~~VvIIG-gG~~G~e~A~~l~~~g~~v-~v~~~~~   36 (185)
T d1q1ra1           3 NDNVVIVG-TGLAGVEVAFGLRASGWEG-NIRLVGD   36 (185)
T ss_dssp             SCEEEEEC-CSHHHHHHHHHHHHTTCCS-EEEEECS
T ss_pred             CCCEEEEC-CcHHHHHHHHHHHHcCCce-EEEEecC
Confidence            56777755 5899999999999998754 3443343

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.18  E-value=0.18  Score=29.20  Aligned_cols=35  Identities=29%  Similarity=0.308  Sum_probs=27.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|+|.|| |++|-.++..|.+.+.+. +|+.+.|.+
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~-~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDA-EIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTS-EEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCC-eEEEEeCCC
Confidence            57888776 599999999999986544 677777654

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=93.10  E-value=0.12  Score=29.95  Aligned_cols=36  Identities=19%  Similarity=0.388  Sum_probs=26.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ..+|.|.| +|.+|+.+++.+.+. .++..|-+.+|+.
T Consensus         3 kirvgiiG-~G~ig~~~~~~l~~~-~~~elvav~~~~~   38 (170)
T d1f06a1           3 NIRVAIVG-YGNLGRSVEKLIAKQ-PDMDLVGIFSRRA   38 (170)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHTTC-SSEEEEEEEESSS
T ss_pred             cceEEEEC-ChHHHHHHHHHHHhC-CCcEEEEEEeccc
Confidence            35788887 699999999988876 4665555566654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.05  E-value=0.12  Score=30.45  Aligned_cols=34  Identities=24%  Similarity=0.219  Sum_probs=27.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +|+|+|.|| |.-|-..+..|.+.|.   .|.++.+.+
T Consensus         1 ~KkV~IIGa-G~aGL~aA~~La~~G~---~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGA-GVSGLAAAYKLKIHGL---NVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTSC---EEEEECSSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC---CEEEEeCCC
Confidence            578888865 7889999999999987   788887643

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=92.98  E-value=0.094  Score=32.91  Aligned_cols=33  Identities=18%  Similarity=0.131  Sum_probs=28.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      +++++|+|.| -|-+|.+.++.|.+.|.   +|++++
T Consensus        34 l~g~~v~IQG-fGnVG~~~a~~L~e~Ga---kvvavs   66 (255)
T d1bgva1          34 LVGKTVALAG-FGNVAWGAAKKLAELGA---KAVTLS   66 (255)
T ss_dssp             STTCEEEECC-SSHHHHHHHHHHHHHTC---EEEEEE
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHcCC---eEEEEe
Confidence            6789999987 69999999999999987   666654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.81  E-value=0.13  Score=28.14  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=28.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++++|. |.|++|-.++..|.+.|.   +|..+.|.+.
T Consensus        32 ~~~vvIi-GgG~iG~E~A~~l~~~g~---~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIII-GGGFIGLELAGNLAEAGY---HVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEE-ECSHHHHHHHHHHHHTTC---EEEEECSSSC
T ss_pred             CCcEEEE-CCcHHHHHHHHHhhcccc---eEEEEecccc
Confidence            4677775 458999999999999987   7888887654

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.79  E-value=0.1  Score=28.06  Aligned_cols=38  Identities=24%  Similarity=0.242  Sum_probs=27.9

Q ss_pred             hhccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         22 EFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        22 ~~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ..|+||+|+|.|+. --|..++..|.+.+.   .++.+.|..
T Consensus        28 ~~f~gK~VlVVG~g-~Sa~dia~~l~~~ak---~v~~~~~r~   65 (107)
T d2gv8a2          28 ELFVGESVLVVGGA-SSANDLVRHLTPVAK---HPIYQSLLG   65 (107)
T ss_dssp             GGGTTCCEEEECSS-HHHHHHHHHHTTTSC---SSEEEECTT
T ss_pred             hhcCCCeEEEECCC-CCHHHHHHHHHHhcC---EEEEEEecC
Confidence            45899999999875 678889999887754   445455543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.78  E-value=0.12  Score=30.19  Aligned_cols=38  Identities=13%  Similarity=0.042  Sum_probs=29.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      -.|.+|+|.| .|.+|...+..+...|.  ..|++.++++.
T Consensus        27 ~~G~~VlV~G-~G~iGl~a~~~ak~~Ga--~~Vi~~d~~~~   64 (174)
T d1e3ia2          27 TPGSTCAVFG-LGCVGLSAIIGCKIAGA--SRIIAIDINGE   64 (174)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTC--SEEEEECSCGG
T ss_pred             CCCCEEEEEC-CChHHHHHHHHHHHhCC--ceeeeeccchH
Confidence            3578999996 59999999999888865  36777776544

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=92.77  E-value=0.14  Score=30.53  Aligned_cols=33  Identities=18%  Similarity=0.221  Sum_probs=27.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+|+|.|| |..|...+..|.++|.   .|.++.|.+
T Consensus         5 ~kV~IiGa-G~aGl~~A~~L~~~G~---~v~v~Er~~   37 (265)
T d2voua1           5 DRIAVVGG-SISGLTAALMLRDAGV---DVDVYERSP   37 (265)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSS
T ss_pred             CcEEEECc-CHHHHHHHHHHHHCCC---CEEEEeCCC
Confidence            57888876 7889999999999987   888888754

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.77  E-value=0.047  Score=31.73  Aligned_cols=33  Identities=24%  Similarity=0.255  Sum_probs=26.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|-|. |.|.+|..++++|++.|+   .|++.+|.+
T Consensus         2 MkIGvI-GlG~MG~~ma~~L~~~G~---~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVV-GLGVMGANLALNIAEKGF---KVAVFNRTY   34 (178)
T ss_dssp             BSEEEE-CCSHHHHHHHHHHHHTTC---CEEEECSSH
T ss_pred             CEEEEE-eehHHHHHHHHHHHHCCC---eEEEEECCH
Confidence            456565 688999999999999998   788888754

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.70  E-value=0.14  Score=30.83  Aligned_cols=34  Identities=18%  Similarity=0.264  Sum_probs=27.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +.|+|+|.|| |..|-..+..|.++|.   .|.++.+.
T Consensus        29 ~pkkV~IIGa-G~aGLsaA~~L~~~G~---~V~vlE~~   62 (370)
T d2iida1          29 NPKHVVIVGA-GMAGLSAAYVLAGAGH---QVTVLEAS   62 (370)
T ss_dssp             SCCEEEEECC-BHHHHHHHHHHHHHTC---EEEEECSS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC---CEEEEeCC
Confidence            3578989876 6889999999999988   77777764

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.57  E-value=0.13  Score=32.93  Aligned_cols=34  Identities=18%  Similarity=0.113  Sum_probs=28.3

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      .+++++|+|-|- |-+|++.++.|.+.|.   +|++++
T Consensus        33 ~L~gktvaIqGf-GnVG~~~A~~L~e~Ga---kvv~vs   66 (293)
T d1hwxa1          33 GFGDKTFAVQGF-GNVGLHSMRYLHRFGA---KCVAVG   66 (293)
T ss_dssp             SSTTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEE
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEE
Confidence            367899988766 8999999999999987   666555

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=92.35  E-value=0.14  Score=31.71  Aligned_cols=33  Identities=15%  Similarity=0.238  Sum_probs=28.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      ++|++|+|-| -|-+|+++++.|.+.|.   +|++++
T Consensus        29 l~g~~v~IqG-fGnVG~~~a~~L~~~Ga---kvv~vs   61 (242)
T d1v9la1          29 IEGKTVAIQG-MGNVGRWTAYWLEKMGA---KVIAVS   61 (242)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTTTC---EEEEEE
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHcCC---eEEEee
Confidence            6789999975 89999999999999987   666655

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.23  E-value=0.17  Score=28.73  Aligned_cols=36  Identities=11%  Similarity=0.225  Sum_probs=30.7

Q ss_pred             ccCcEEEEEcCC---ChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGT---GFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~t---G~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++.++|+|.|++   +-.|..+++.|.+.|+   .|+.+...
T Consensus        17 ~~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~---~v~pVnP~   55 (139)
T d2d59a1          17 TRYKKIALVGASPKPERDANIVMKYLLEHGY---DVYPVNPK   55 (139)
T ss_dssp             HHCCEEEEETCCSCTTSHHHHHHHHHHHTTC---EEEEECTT
T ss_pred             hcCCeEEEEeecCCCCCchHHHHHHHHHCCC---EEEEECCc
Confidence            467899999997   7899999999999988   78877654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=92.23  E-value=0.14  Score=29.64  Aligned_cols=34  Identities=15%  Similarity=0.153  Sum_probs=28.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+|.+.|- |.+|..+++.|++.|+   .|++.+|++.
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~~G~---~V~v~dr~~~   36 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMNDHGF---VVCAFNRTVS   36 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC---CEEEECSSTH
T ss_pred             CcEEEEeE-hHHHHHHHHHHHHCCC---eEEEEcCCHH
Confidence            45667665 9999999999999998   7888888654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.16  E-value=0.13  Score=29.20  Aligned_cols=33  Identities=12%  Similarity=0.191  Sum_probs=26.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|.+. |+|-+|+++++.|.+.++   ++++..|+.
T Consensus         1 MkIg~I-G~G~mG~al~~~l~~~~~---~i~v~~r~~   33 (152)
T d2ahra2           1 MKIGII-GVGKMASAIIKGLKQTPH---ELIISGSSL   33 (152)
T ss_dssp             CEEEEE-CCSHHHHHHHHHHTTSSC---EEEEECSSH
T ss_pred             CEEEEE-eccHHHHHHHHHHHhCCC---eEEEEcChH
Confidence            456666 688999999999999977   778777753

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.15  E-value=0.15  Score=30.14  Aligned_cols=35  Identities=14%  Similarity=0.233  Sum_probs=29.9

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEe
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      .++||+++|.|.+.-+|+=++..|+++|.   .|....
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~ga---TVt~~~   60 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLANDGA---TVYSVD   60 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSC---EEEEEC
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHCCC---EEEEec
Confidence            47899999999999999999999999976   555443

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=92.08  E-value=0.24  Score=29.16  Aligned_cols=37  Identities=22%  Similarity=0.157  Sum_probs=31.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.|++|.|.|. |-||+.+++.+...|.   +|++.+|.+.
T Consensus        40 l~gk~vgIiG~-G~IG~~va~~l~~~g~---~v~~~d~~~~   76 (181)
T d1qp8a1          40 IQGEKVAVLGL-GEIGTRVGKILAALGA---QVRGFSRTPK   76 (181)
T ss_dssp             CTTCEEEEESC-STHHHHHHHHHHHTTC---EEEEECSSCC
T ss_pred             ccCceEEEecc-ccccccceeeeecccc---cccccccccc
Confidence            67899999876 4599999999999987   8888888654

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.08  E-value=0.15  Score=29.97  Aligned_cols=35  Identities=17%  Similarity=0.151  Sum_probs=29.3

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +.||+++|.| .|.+|+.+++.+...|.   +|.+....
T Consensus        22 l~Gk~v~V~G-yG~iG~g~A~~~rg~G~---~V~v~e~d   56 (163)
T d1li4a1          22 IAGKVAVVAG-YGDVGKGCAQALRGFGA---RVIITEID   56 (163)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEECSC
T ss_pred             ecCCEEEEec-cccccHHHHHHHHhCCC---eeEeeecc
Confidence            6789988865 78999999999999988   77776654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.01  E-value=0.15  Score=29.08  Aligned_cols=31  Identities=23%  Similarity=0.268  Sum_probs=25.8

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        29 ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|.| +|+.|...+..|.++|.   +|.++.+.+
T Consensus         8 viViG-aG~~Gl~~A~~La~~G~---~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLG-TGITECILSGLLSVDGK---KVLHIDKQD   38 (297)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTC---CEEEECSSS
T ss_pred             EEEEC-cCHHHHHHHHHHHHCCC---CEEEEcCCC
Confidence            66666 78999999999999987   788888754

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=91.97  E-value=0.28  Score=29.20  Aligned_cols=37  Identities=11%  Similarity=0.089  Sum_probs=30.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.|+++.|. |.|-||+.+++.+..-|.   +|++.++...
T Consensus        47 L~gktvgIi-G~G~IG~~va~~l~~fg~---~v~~~d~~~~   83 (193)
T d1mx3a1          47 IRGETLGII-GLGRVGQAVALRAKAFGF---NVLFYDPYLS   83 (193)
T ss_dssp             CTTCEEEEE-CCSHHHHHHHHHHHTTTC---EEEEECTTSC
T ss_pred             eeCceEEEe-ccccccccceeeeecccc---ceeeccCccc
Confidence            678999998 568899999999999987   7888777543

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.96  E-value=0.15  Score=29.80  Aligned_cols=32  Identities=19%  Similarity=0.227  Sum_probs=25.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|.|.| .||+|..++..| +.|+   +|++++-++
T Consensus         1 MkI~ViG-lG~vGl~~a~~~-a~g~---~V~g~Din~   32 (196)
T d1dlja2           1 MKIAVAG-SGYVGLSLGVLL-SLQN---EVTIVDILP   32 (196)
T ss_dssp             CEEEEEC-CSHHHHHHHHHH-TTTS---EEEEECSCH
T ss_pred             CEEEEEC-CChhHHHHHHHH-HCCC---cEEEEECCH
Confidence            5788885 899999988655 5777   888888653

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=91.70  E-value=0.35  Score=25.93  Aligned_cols=38  Identities=13%  Similarity=0.177  Sum_probs=26.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++++|.|| |++|-.++..|.+.......|..+.|.+.
T Consensus        18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CCeEEEECC-ChHHHHHHHHhHhhcccccccceeccccc
Confidence            467888765 79999999877665332237888887643

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.61  E-value=0.27  Score=27.33  Aligned_cols=34  Identities=32%  Similarity=0.497  Sum_probs=25.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHH----hCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLR----SCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~----~g~~~~~V~~l~r~~   63 (82)
                      .++++|.|| ||+|-.++..|.+    .|.   +|+.+.+.+
T Consensus        37 ~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~---~Vt~i~~~~   74 (137)
T d1m6ia2          37 VKSITIIGG-GFLGSELACALGRKARALGT---EVIQLFPEK   74 (137)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHHHHHTC---EEEEECSSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHHHHhcCC---EEEEecccc
Confidence            678888866 9999999988853    444   777777754

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=91.48  E-value=0.13  Score=29.59  Aligned_cols=36  Identities=22%  Similarity=0.269  Sum_probs=27.2

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.+|+|.|+ |.+|...+..+...|..  .|++.++++
T Consensus        32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~--~vv~~~~~~   67 (172)
T d1h2ba2          32 PGAYVAIVGV-GGLGHIAVQLLKVMTPA--TVIALDVKE   67 (172)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCC--EEEEEESSH
T ss_pred             CCCEEEEeCC-ChHHHHHHHHHHhhcCc--ccccccchh
Confidence            4678999875 99999999888888652  566666643

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.44  E-value=0.25  Score=28.79  Aligned_cols=34  Identities=15%  Similarity=0.220  Sum_probs=25.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcc---eEEEEeC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIK---NIYLLMR   61 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~---~V~~l~r   61 (82)
                      |+|+|.|| |.+|...+.+|.++|+++.   ++..+.+
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v~e~~~i~~~   37 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSVLQPLDVKVYAD   37 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTTSSSCEEEEEES
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCceEEeeeeeccc
Confidence            46788775 7899999999999987642   4555554

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.35  E-value=0.28  Score=26.85  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=28.0

Q ss_pred             cEEEEEcCC---ChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGT---GFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~t---G~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      |+|.|.|++   +-.|..+++.|++.|+   +|+.+...
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~---~V~pVnP~   37 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGF---EVLPVNPN   37 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTC---EEEEECTT
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCC---EEEEEccc
Confidence            689999986   6789999999999988   78877643

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=91.27  E-value=0.37  Score=28.29  Aligned_cols=36  Identities=14%  Similarity=0.114  Sum_probs=30.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.+++|.|. |.|.||+.+++.+...|.   +|+..++..
T Consensus        42 l~~~~vgii-G~G~IG~~va~~l~~fg~---~v~~~d~~~   77 (188)
T d1sc6a1          42 ARGKKLGII-GYGHIGTQLGILAESLGM---YVYFYDIEN   77 (188)
T ss_dssp             STTCEEEEE-CCSHHHHHHHHHHHHTTC---EEEEECSSC
T ss_pred             ccceEEEEe-ecccchhhhhhhcccccc---eEeeccccc
Confidence            568888887 789999999999998877   788887754

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=91.17  E-value=0.28  Score=27.53  Aligned_cols=32  Identities=13%  Similarity=0.164  Sum_probs=25.1

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +|+|.|. |-+|..+++.|.+.|.   .|+++..++
T Consensus         5 HiII~G~-g~~g~~l~~~L~~~~~---~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGH-SILAINTILQLNQRGQ---NVTVISNLP   36 (153)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTC---CEEEEECCC
T ss_pred             EEEEECC-CHHHHHHHHHHHHcCC---CEEEEeccc
Confidence            4777777 7889999999999987   666776543

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=91.04  E-value=0.3  Score=29.21  Aligned_cols=36  Identities=19%  Similarity=0.255  Sum_probs=30.0

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.|++|.|.| .|-||+.+++.+..-|.   +|++.++..
T Consensus        41 l~gk~vgIiG-~G~IG~~va~~l~~fg~---~V~~~d~~~   76 (197)
T d1j4aa1          41 VRDQVVGVVG-TGHIGQVFMQIMEGFGA---KVITYDIFR   76 (197)
T ss_dssp             GGGSEEEEEC-CSHHHHHHHHHHHHTTC---EEEEECSSC
T ss_pred             ccCCeEEEec-ccccchhHHHhHhhhcc---cccccCccc
Confidence            6789999876 68899999999999887   777777653

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=90.99  E-value=0.4  Score=28.12  Aligned_cols=37  Identities=14%  Similarity=0.110  Sum_probs=30.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.++++.|.| .|-||+.+++.|...|.   .|...++...
T Consensus        42 l~~~~vgiiG-~G~IG~~va~~l~~fg~---~v~~~d~~~~   78 (188)
T d2naca1          42 LEAMHVGTVA-AGRIGLAVLRRLAPFDV---HLHYTDRHRL   78 (188)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHGGGTC---EEEEECSSCC
T ss_pred             ccccceeecc-ccccchhhhhhhhccCc---eEEEEeeccc
Confidence            5678888866 78899999999999877   7888887544

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.96  E-value=0.3  Score=28.96  Aligned_cols=33  Identities=15%  Similarity=0.341  Sum_probs=25.3

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +++|.|| |++|-.++..|.+.+++. .|..+.+.
T Consensus         6 ~~vIvG~-G~aG~~~A~~Lr~~~~~~-~I~li~~e   38 (213)
T d1m6ia1           6 PFLLIGG-GTAAFAAARSIRARDPGA-RVLIVSED   38 (213)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHHSTTC-EEEEEESS
T ss_pred             CEEEECC-cHHHHHHHHHHHhcCCCC-cEEEEeCC
Confidence            5667665 999999999999987653 67777653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=90.61  E-value=0.38  Score=28.29  Aligned_cols=36  Identities=17%  Similarity=0.186  Sum_probs=30.4

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .+.|+|+|.|| |..|-..+..|.++|+   +|..+.+.+
T Consensus        41 ~~~k~V~IIGa-GPAGL~AA~~la~~G~---~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGA-GPAGLAFAINAAARGH---QVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHTTTC---EEEEEESSS
T ss_pred             CCCcEEEEECc-cHHHHHHHHHHHhhcc---ceEEEeccC
Confidence            45789999876 7889999999999998   888888764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.48  E-value=0.18  Score=29.92  Aligned_cols=37  Identities=14%  Similarity=0.058  Sum_probs=27.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      -.|.+|+|.|+ |-+|...+..+...|.  ..|++.++++
T Consensus        24 ~~G~tVlV~Ga-G~vGl~a~~~ak~~ga--~~Vi~~d~~~   60 (195)
T d1kola2          24 GPGSTVYVAGA-GPVGLAAAASARLLGA--AVVIVGDLNP   60 (195)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--SEEEEEESCH
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhhcc--cceeeecccc
Confidence            35789999975 8999887777766654  3777777654

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.44  E-value=0.34  Score=28.49  Aligned_cols=37  Identities=14%  Similarity=0.158  Sum_probs=29.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.++++.|.| .|.||+.+++.+..-|.   .|+..++...
T Consensus        42 l~~k~vgiiG-~G~IG~~va~~~~~fg~---~v~~~d~~~~   78 (184)
T d1ygya1          42 IFGKTVGVVG-LGRIGQLVAQRIAAFGA---YVVAYDPYVS   78 (184)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTTTC---EEEEECTTSC
T ss_pred             ccceeeeecc-ccchhHHHHHHhhhccc---eEEeecCCCC
Confidence            5678888866 78999999999998877   7888877543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.26  E-value=0.23  Score=28.35  Aligned_cols=38  Identities=16%  Similarity=0.016  Sum_probs=26.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      -.+.+|+|.|+.| +|...+..+...+.  ..|+++++.+.
T Consensus        27 k~g~~VlI~G~Gg-~g~~~~~~~~~~g~--~~Vi~~~~~~~   64 (175)
T d1cdoa2          27 EPGSTCAVFGLGA-VGLAAVMGCHSAGA--KRIIAVDLNPD   64 (175)
T ss_dssp             CTTCEEEEECCSH-HHHHHHHHHHHTTC--SEEEEECSCGG
T ss_pred             CCCCEEEEEecCC-ccchHHHHHHHHhh--chheeecchHH
Confidence            3578899998755 67777777777654  37888887654

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=90.24  E-value=0.47  Score=26.93  Aligned_cols=27  Identities=22%  Similarity=0.206  Sum_probs=22.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcc
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIK   54 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~   54 (82)
                      .+|+|.| .|++|-.++..|.+.|.++.
T Consensus         4 a~VvIIG-gG~~G~e~A~~l~~~g~~v~   30 (183)
T d1d7ya1           4 APVVVLG-AGLASVSFVAELRQAGYQGL   30 (183)
T ss_dssp             SSEEEEC-CSHHHHHHHHHHHHHTCCSC
T ss_pred             CCEEEEC-ccHHHHHHHHHHHhcCCceE
Confidence            4578877 78999999999999987653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.22  E-value=0.41  Score=28.46  Aligned_cols=36  Identities=22%  Similarity=0.255  Sum_probs=29.1

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ...++|+|.|| |..|-..+..|.++|+   .|..+.+..
T Consensus        47 ~~~k~VvIIGa-GpAGl~aA~~l~~~G~---~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVGA-GPSGSEAARVLMESGY---TVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSS
T ss_pred             cCCceEEEEcc-cHHHHHHHHHHHHhcc---ceeeEeecc
Confidence            35688988876 7889999999999988   777777654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.21  E-value=0.41  Score=28.24  Aligned_cols=32  Identities=22%  Similarity=0.293  Sum_probs=25.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      ..+|+|.|| |.-|-..+..|.++|.   +|.++-+
T Consensus         5 ~~kViVIGa-G~aGL~aA~~L~~~G~---~V~VlEa   36 (449)
T d2dw4a2           5 TGKVIIIGS-GVSGLAAARQLQSFGM---DVTLLEA   36 (449)
T ss_dssp             CCEEEEECC-BHHHHHHHHHHHHTTC---EEEEECS
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhCCC---CEEEEeC
Confidence            356888775 7889999999999987   6776654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.18  E-value=0.33  Score=26.08  Aligned_cols=35  Identities=14%  Similarity=0.250  Sum_probs=28.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++++|. |.|++|-.++..|.+.|.   +|..+.|.+.
T Consensus        21 p~~vvIi-GgG~~G~E~A~~l~~~g~---~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVV-GGGYIGLELGIAYRKLGA---QVSVVEARER   55 (115)
T ss_dssp             CSEEEEE-CCSHHHHHHHHHHHHHTC---EEEEECSSSS
T ss_pred             CCeEEEE-CCCHHHHHHHHHHhhccc---ceEEEeeecc
Confidence            3567665 568999999999999987   7888887543

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.01  E-value=0.59  Score=25.37  Aligned_cols=35  Identities=20%  Similarity=0.239  Sum_probs=28.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ..+|.|.| .|.+|+-++....+.|.   ++++++.+++
T Consensus        11 ~~kigIlG-gGQL~rMla~aA~~lG~---~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLG-SGELGKEVAIECQRLGV---EVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEES-CSHHHHHHHHHHHTTTC---EEEEEESSTT
T ss_pred             CCEEEEEe-CCHHHHHHHHHHHHCCC---EEEEEcCCCC
Confidence            35799988 68899999999999988   7888887643

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Peptidoglycan biosynthesis glycosyltransferase MurG
domain: Peptidoglycan biosynthesis glycosyltransferase MurG
species: Escherichia coli [TaxId: 562]

Probab=89.71  E-value=0.32  Score=29.77  Aligned_cols=31  Identities=23%  Similarity=0.379  Sum_probs=20.1

Q ss_pred             cEEEEEc-CC-ChH--HHHHHHHHHHhCCCcceEEEEe
Q psy16528         27 RSVFVTG-GT-GFM--GKVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        27 ~~ilItG-~t-G~i--G~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      |+|+|++ || |.+  ..+++++|.++|+   +|..+.
T Consensus         1 kkili~~~GtGGHv~~a~al~~~L~~~G~---eV~~i~   35 (351)
T d1f0ka_           1 KRLMVMAGGTGGHVFPGLAVAHHLMAQGW---QVRWLG   35 (351)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHTTTC---EEEEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHHHHhCCC---EEEEEE
Confidence            4666665 55 333  4568899999988   565544

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.47  E-value=0.2  Score=34.30  Aligned_cols=37  Identities=8%  Similarity=0.098  Sum_probs=29.4

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      .++..+|+|.|+ |.+|..+++.|...|.  ..++.++.+
T Consensus        22 ~L~~s~VlvvG~-gglG~Ei~knLvl~GV--g~itivD~d   58 (529)
T d1yova1          22 ALESAHVCLINA-TATGTEILKNLVLPGI--GSFTIIDGN   58 (529)
T ss_dssp             HHHHCEEEECCC-SHHHHHHHHHHHTTTC--SEEEEECCS
T ss_pred             HHhCCCEEEECC-CHHHHHHHHHHHHhcC--CEEEEEcCC
Confidence            356789999987 6699999999999964  577777653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=89.13  E-value=0.33  Score=29.62  Aligned_cols=33  Identities=24%  Similarity=0.420  Sum_probs=25.3

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .|+|.|| |.+|..++.+|.++|.  ..|..+.|..
T Consensus         3 dViIIGa-Gi~G~s~A~~La~~G~--~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGA-GIVGTNLADELVTRGW--NNITVLDQGP   35 (305)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTC--CCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC--CcEEEEeCCC
Confidence            4667665 6899999999999974  2588887753

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.10  E-value=0.48  Score=29.18  Aligned_cols=34  Identities=12%  Similarity=0.188  Sum_probs=26.4

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEe
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRS-CPGIKNIYLLM   60 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~-g~~~~~V~~l~   60 (82)
                      .+++++|+|-|. |-+|.++++.|.+. |.   .|++++
T Consensus        29 ~l~g~~v~IqGf-GnVG~~~a~~L~~~~G~---kvv~vs   63 (239)
T d1gtma1          29 TLKGKTIAIQGY-GNAGYYLAKIMSEDFGM---KVVAVS   63 (239)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCC---EEEEEE
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHhcCc---ceeecc
Confidence            367899998776 88999999998764 65   666554

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=88.88  E-value=0.58  Score=27.78  Aligned_cols=37  Identities=19%  Similarity=0.198  Sum_probs=30.2

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      +.+++|.|.| .|-||+.+++.|..-|.   +|++.++...
T Consensus        43 l~~ktvgIiG-~G~IG~~va~~l~~fg~---~v~~~d~~~~   79 (199)
T d1dxya1          43 LGQQTVGVMG-TGHIGQVAIKLFKGFGA---KVIAYDPYPM   79 (199)
T ss_dssp             GGGSEEEEEC-CSHHHHHHHHHHHHTTC---EEEEECSSCC
T ss_pred             ccceeeeeee-cccccccccccccccce---eeeccCCccc
Confidence            6688888865 67899999999999987   7888887543

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=88.79  E-value=0.16  Score=30.02  Aligned_cols=32  Identities=22%  Similarity=0.396  Sum_probs=26.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      ++|.|.|+ |-+|++++..|.+.|+   .|....|+
T Consensus         8 ~KI~ViGa-G~wGtAlA~~La~~g~---~V~l~~r~   39 (189)
T d1n1ea2           8 NKAVVFGS-GAFGTALAMVLSKKCR---EVCVWHMN   39 (189)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTTEE---EEEEECSC
T ss_pred             ceEEEECC-CHHHHHHHHHHHHcCC---eEEEEEec
Confidence            46888876 5679999999999987   78888875

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.45  E-value=0.19  Score=28.30  Aligned_cols=27  Identities=19%  Similarity=0.104  Sum_probs=23.4

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCPG   52 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~~   52 (82)
                      .+++|+|.|| |++|..++..+.+.|..
T Consensus        28 ~gkrVvVIGg-G~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2          28 VGNKVAIIGC-GGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             CCSEEEEECC-HHHHHHHHHHHTCCSSC
T ss_pred             cCCceEEEcC-chhHHHHHHHHHHcCCc
Confidence            4789999996 89999999999998753

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=87.11  E-value=0.9  Score=26.25  Aligned_cols=37  Identities=16%  Similarity=0.337  Sum_probs=28.8

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .++||+|+|.|+ |--|-.++..+.+.+.   .++.+.|..
T Consensus        29 ~~~gK~V~VvG~-G~Sa~dia~~~~~~~~---~~~~~~~~~   65 (235)
T d1w4xa2          29 DFSGQRVGVIGT-GSSGIQVSPQIAKQAA---ELFVFQRTP   65 (235)
T ss_dssp             CCBTCEEEEECC-SHHHHHHHHHHHHHBS---EEEEEESSC
T ss_pred             CCCCCEEEEECC-CccHHHHHHHHHhhhc---ccccccccc
Confidence            378999999965 5678999999999876   666666654

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=86.86  E-value=0.75  Score=28.19  Aligned_cols=35  Identities=23%  Similarity=0.212  Sum_probs=28.2

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      .++|++|+|- |-|-+|+++++.|.+.|.   +|++.+.
T Consensus        36 ~l~g~~v~Iq-G~GnVG~~~a~~L~~~Ga---kvv~~d~   70 (230)
T d1leha1          36 SLEGLAVSVQ-GLGNVAKALCKKLNTEGA---KLVVTDV   70 (230)
T ss_dssp             CCTTCEEEEE-CCSHHHHHHHHHHHHTTC---EEEEECS
T ss_pred             CCCCCEEEEE-CCCHHHHHHHHHHHHCCC---EEEeecc
Confidence            3778999885 568899999999999987   6666554

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.56  E-value=0.93  Score=26.57  Aligned_cols=35  Identities=17%  Similarity=0.237  Sum_probs=25.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+|+|.|| |..|..++..|.+.|.  ..|.++.|++.
T Consensus         2 ~~V~IvGa-G~aGl~~A~~L~~~Gi--~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGA-GIGGLSCALALHQAGI--GKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--SEEEEEESSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--CeEEEEeCCCC
Confidence            36777765 7889999999999873  26777777543

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=86.51  E-value=1.2  Score=24.96  Aligned_cols=36  Identities=11%  Similarity=0.146  Sum_probs=29.2

Q ss_pred             CcEEEEEcCCC----------hHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTG----------FMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG----------~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++|+|.|+..          +-+.+.++.|.+.|+   +++.+..++.
T Consensus         7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~---~~iliN~NP~   52 (127)
T d1a9xa3           7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGY---RVINVNSNPA   52 (127)
T ss_dssp             CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC---EEEEECSCTT
T ss_pred             CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC---eEEEecCchH
Confidence            47899999954          889999999999988   6777666553

>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]}

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: MrsD
species: Bacillus sp. hil-y85/54728 [TaxId: 69002]

Probab=86.50  E-value=0.28  Score=29.23  Aligned_cols=34  Identities=12%  Similarity=0.249  Sum_probs=21.1

Q ss_pred             hccCcEEEEEcCCChHH----HHHHHHHHHhCCCcceEEEEe
Q psy16528         23 FYQNRSVFVTGGTGFMG----KVLVEKLLRSCPGIKNIYLLM   60 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG----~~i~~~l~~~g~~~~~V~~l~   60 (82)
                      +++||+|+| |.||.++    ..+++.|.+.|.   +|.++.
T Consensus         3 ~l~~KkIll-gvTGsiaa~k~~~l~~~L~~~g~---eV~vv~   40 (183)
T d1p3y1_           3 ILKDKKLLI-GICGSISSVGISSYLLYFKSFFK---EIRVVM   40 (183)
T ss_dssp             TGGGCEEEE-EECSCGGGGGTHHHHHHHTTTSS---EEEEEE
T ss_pred             CcCCCEEEE-EEeCHHHHHHHHHHHHHHHHCCC---eEEEEE
Confidence            367888753 5555443    366677777766   566554

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=85.66  E-value=1.6  Score=24.19  Aligned_cols=36  Identities=11%  Similarity=0.072  Sum_probs=28.8

Q ss_pred             CcEEEEEcCCC----------hHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         26 NRSVFVTGGTG----------FMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        26 ~~~ilItG~tG----------~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .++|+|.|+..          +-+.+.++.|.+.|+   +++.+..++.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~---~~IliN~NPe   49 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY---ETIMVNCNPE   49 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC---EEEEECCCTT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC---eEEEEecChh
Confidence            47899999855          889999999999988   6776666553

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.50  E-value=1.1  Score=23.01  Aligned_cols=33  Identities=18%  Similarity=0.208  Sum_probs=25.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|.|.|| |.+|+-++..-.+.|.   +++.++..+
T Consensus         2 k~vgIlG~-GQLgrMl~~Aa~~LG~---~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGN-GQLGRMLRQAGEPLGI---AVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBC-SHHHHHHHHHHGGGTE---EEEEECTTS
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCC---EEEEEcCCC
Confidence            57777765 7889999999999877   777777644

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=85.47  E-value=0.76  Score=25.87  Aligned_cols=32  Identities=22%  Similarity=0.376  Sum_probs=23.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +|+|.|| |..|...+..|.++|.  ..|.++.++
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~--~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGA-GMSGISAAKRLSEAGI--TDLLILEAT   33 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHHTTC--CCEEEECSS
T ss_pred             CEEEECC-cHHHHHHHHHHHhCCC--CcEEEEECC
Confidence            3666664 7889999999999974  147776654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=85.46  E-value=0.75  Score=28.71  Aligned_cols=32  Identities=22%  Similarity=0.347  Sum_probs=25.7

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      .|+|.|| |+.|-..+.+|.+.|.   .|.++.+.+
T Consensus         9 dV~IIGA-G~sGl~~a~~L~~~G~---~v~i~Ek~~   40 (298)
T d1w4xa1           9 DVLVVGA-GFSGLYALYRLRELGR---SVHVIETAG   40 (298)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC---CEEEECSSS
T ss_pred             CEEEECc-cHHHHHHHHHHHhCCC---CEEEEEcCC
Confidence            5777775 7899999999999987   677777653

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.46  E-value=0.96  Score=26.48  Aligned_cols=31  Identities=23%  Similarity=0.539  Sum_probs=24.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR   61 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r   61 (82)
                      +|.|-| .|.||+.+++.+.++ .++ +|+++..
T Consensus         3 KVaING-fGRIGR~v~Ral~~~-~di-evVaInd   33 (178)
T d1b7go1           3 NVAVNG-YGTIGKRVADAIIKQ-PDM-KLVGVAK   33 (178)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTC-TTE-EEEEEEC
T ss_pred             EEEEEC-CCHHHHHHHHHHHhC-CCC-EEEEEEC
Confidence            688887 799999999999987 355 5555543

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=84.85  E-value=0.49  Score=26.69  Aligned_cols=48  Identities=15%  Similarity=0.267  Sum_probs=27.6

Q ss_pred             CcEEEEEcCCChHH-HHHHHHHHHhCCCcceEEEEeCCCCCccHHHHHHH
Q psy16528         26 NRSVFVTGGTGFMG-KVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAE   74 (82)
Q Consensus        26 ~~~ilItG~tG~iG-~~i~~~l~~~g~~~~~V~~l~r~~~~~~~~~~~~~   74 (82)
                      ++.++|.||+|..= ..++++|.+.+.++. ++.-.|++++.-..+.+++
T Consensus         9 ~kvllIAgG~GitPl~sm~~~l~~~~~~v~-l~~g~r~~~~~~~~~el~~   57 (160)
T d1ep3b2           9 DKILIIGGGIGVPPLYELAKQLEKTGCQMT-ILLGFASENVKILENEFSN   57 (160)
T ss_dssp             SEEEEEEEGGGSHHHHHHHHHHHHHTCEEE-EEEEESSGGGCCCHHHHHT
T ss_pred             CEEEEEEeeeeHHHHHHHHHHHHhccCceE-EEEecCCHHHHHHHHHHHH
Confidence            45678889999422 235666777765453 3334565554444455544

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.84  E-value=1.2  Score=27.25  Aligned_cols=33  Identities=15%  Similarity=0.172  Sum_probs=25.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHH-hCCCcceEEEEe
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLR-SCPGIKNIYLLM   60 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~-~g~~~~~V~~l~   60 (82)
                      +++++|+|- |.|-+|++++++|.+ .|.   .|++++
T Consensus        29 l~g~~vaIq-G~GnVG~~~a~~L~~e~Ga---~vv~vs   62 (234)
T d1b26a1          29 PKKATVAVQ-GFGNVGQFAALLISQELGS---KVVAVS   62 (234)
T ss_dssp             TTTCEEEEE-CCSHHHHHHHHHHHHHHCC---EEEEEE
T ss_pred             cCCCEEEEE-CCCHHHHHHHHHHHHhcCC---ceEEee
Confidence            678998886 589999999999964 577   565554

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=84.65  E-value=1.6  Score=22.80  Aligned_cols=38  Identities=16%  Similarity=-0.016  Sum_probs=26.6

Q ss_pred             hccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         23 FYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        23 ~~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +.+.++|.+.|-.|--=+.+++.|.++|+   .|..-++..
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~---~VsGSD~~~   42 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY---QISGSDIAD   42 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTC---EEEEEESCC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCC---EEEEEeCCC
Confidence            34557777775444322667999999998   888888753

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=84.57  E-value=0.9  Score=26.58  Aligned_cols=26  Identities=15%  Similarity=0.296  Sum_probs=19.7

Q ss_pred             cCcEEEEEcCCChHHHHHHHHHHHhCC
Q psy16528         25 QNRSVFVTGGTGFMGKVLVEKLLRSCP   51 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i~~~l~~~g~   51 (82)
                      +.++++|.||.|+ |+.++.-+.+.++
T Consensus         1 k~kkl~i~Gagg~-~~~v~di~~~~~~   26 (193)
T d3bswa1           1 RTEKIYIYGASGH-GLVCEDVAKNMGY   26 (193)
T ss_dssp             CCSEEEEEC--CH-HHHHHHHHHHHTC
T ss_pred             CCCEEEEEcCCHh-HHHHHHHHHhCCC
Confidence            3578999999986 8888888888866

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=83.94  E-value=1.1  Score=26.64  Aligned_cols=31  Identities=23%  Similarity=0.325  Sum_probs=25.6

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        29 ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|.| .|..|..++.+|.++|.   .|.++.+..
T Consensus         7 vvIIG-aGi~Gls~A~~La~~G~---~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIG-GGIIGSAIAYYLAKENK---NTALFESGT   37 (276)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTC---CEEEECSSS
T ss_pred             EEEEC-cCHHHHHHHHHHHHCCC---cEEEEeCCC
Confidence            66665 58999999999999987   788888754

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.94  E-value=2.1  Score=25.40  Aligned_cols=41  Identities=15%  Similarity=0.212  Sum_probs=30.6

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhC------------------CCcceEEEEeCCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSC------------------PGIKNIYLLMRPKHG   65 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g------------------~~~~~V~~l~r~~~~   65 (82)
                      +.+++|+|.| .|.++--+++-+++..                  .+++.|+++.|....
T Consensus        37 ~~gk~VvVIG-gGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~   95 (225)
T d1cjca1          37 LSCDTAVILG-QGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL   95 (225)
T ss_dssp             TTSSEEEEES-CSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             ccCceEEEEC-CchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChH
Confidence            5688888765 5778888888887732                  256799999997653

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=83.76  E-value=1.1  Score=25.89  Aligned_cols=31  Identities=16%  Similarity=0.176  Sum_probs=25.4

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        29 ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      ++|.|| |..|...+..+.+.|.   +|.++.+..
T Consensus         5 vvVIG~-G~aG~~aA~~a~~~G~---kV~iiE~~~   35 (217)
T d1gesa1           5 YIAIGG-GSGGIASINRAAMYGQ---KCALIEAKE   35 (217)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTC---CEEEEESSC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCC---EEEEEeccC
Confidence            677777 9999999999999987   677777643

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=83.44  E-value=1.2  Score=25.93  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=28.9

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP   62 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~   62 (82)
                      +.||+++|.| =|.+|+-+++.+...|.   .|++...+
T Consensus        21 laGk~vvV~G-YG~vGrG~A~~~rg~Ga---~V~V~E~D   55 (163)
T d1v8ba1          21 ISGKIVVICG-YGDVGKGCASSMKGLGA---RVYITEID   55 (163)
T ss_dssp             CTTSEEEEEC-CSHHHHHHHHHHHHHTC---EEEEECSC
T ss_pred             ecCCEEEEec-ccccchhHHHHHHhCCC---EEEEEecC
Confidence            6789988865 68999999999999988   77776544

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.36  E-value=0.94  Score=27.18  Aligned_cols=32  Identities=22%  Similarity=0.212  Sum_probs=26.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +|+|.||. ..|..++..|.+.|.   .|.++.+.+
T Consensus         4 ~V~IvGaG-p~Gl~~A~~L~~~G~---~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAG-PSGLLLGQLLHKAGI---DNVILERQT   35 (292)
T ss_dssp             SEEEECCS-HHHHHHHHHHHHHTC---CEEEECSSC
T ss_pred             CEEEECcC-HHHHHHHHHHHHCCC---CEEEEeCCC
Confidence            57887764 999999999999987   788887754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=83.35  E-value=1.4  Score=27.29  Aligned_cols=35  Identities=26%  Similarity=0.276  Sum_probs=26.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        27 ~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      |+|+|.|| |..|-..+..|++.+... .|+++.|..
T Consensus         5 KrVaIIGa-G~sGl~~A~~L~~~~~~~-~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGA-GPSGLVTAKALLAEKAFD-QVTLFERRG   39 (335)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTTCCS-EEEEECSSS
T ss_pred             CeEEEECc-CHHHHHHHHHHHHhCCCC-CEEEEECCC
Confidence            67888865 788889999998876322 788888764

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=82.22  E-value=2  Score=25.20  Aligned_cols=37  Identities=16%  Similarity=0.222  Sum_probs=29.5

Q ss_pred             ccCcEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCCC
Q psy16528         24 YQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        24 ~~~~~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      ++++++.|.| .|-||+.+++.+...|.   .|...++...
T Consensus        45 l~g~tvgIiG-~G~IG~~va~~l~~fg~---~v~~~d~~~~   81 (191)
T d1gdha1          45 LDNKTLGIYG-FGSIGQALAKRAQGFDM---DIDYFDTHRA   81 (191)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTTTC---EEEEECSSCC
T ss_pred             ecccceEEee-cccchHHHHHHHHhhcc---cccccccccc
Confidence            5789998865 57899999999998887   7777776443

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=81.79  E-value=1.3  Score=26.82  Aligned_cols=34  Identities=15%  Similarity=0.245  Sum_probs=27.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHH-hCCCcceEEEEeCCC
Q psy16528         26 NRSVFVTGGTGFMGKVLVEKLLR-SCPGIKNIYLLMRPK   63 (82)
Q Consensus        26 ~~~ilItG~tG~iG~~i~~~l~~-~g~~~~~V~~l~r~~   63 (82)
                      ..-|+|.|| |..|...+..|.+ .|.   .|.++.+.+
T Consensus        33 e~DViVIGa-GpaGL~aA~~LA~~~G~---~V~vlE~~~   67 (278)
T d1rp0a1          33 ETDVVVVGA-GSAGLSAAYEISKNPNV---QVAIIEQSV   67 (278)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHTSTTS---CEEEEESSS
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHccCC---eEEEEecCC
Confidence            455899998 9999999999876 477   788888754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.20  E-value=1.1  Score=24.47  Aligned_cols=26  Identities=35%  Similarity=0.310  Sum_probs=20.1

Q ss_pred             cEEEEEcCCC----hHHHHHHHHHHHhCCC
Q psy16528         27 RSVFVTGGTG----FMGKVLVEKLLRSCPG   52 (82)
Q Consensus        27 ~~ilItG~tG----~iG~~i~~~l~~~g~~   52 (82)
                      |.|+|||..|    .+-.+++..|.+.+..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~   31 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVP   31 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCC
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCCE
Confidence            6799999988    5666778888877653

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=80.73  E-value=1.3  Score=26.64  Aligned_cols=37  Identities=16%  Similarity=0.178  Sum_probs=28.2

Q ss_pred             cCcEEEEEcCCChHHHHH-----HHHHHHhCCCcceEEEEeCCCC
Q psy16528         25 QNRSVFVTGGTGFMGKVL-----VEKLLRSCPGIKNIYLLMRPKH   64 (82)
Q Consensus        25 ~~~~ilItG~tG~iG~~i-----~~~l~~~g~~~~~V~~l~r~~~   64 (82)
                      .+.+|+|+.|=|.+|+..     +..|.++|.   +|.+++-++.
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~---rVllvD~Dp~   59 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGF---DVHLTTSDPA   59 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEESCCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC---cEEEEeCCCC
Confidence            477888998888888765     577888887   6777777643

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=80.59  E-value=1.7  Score=24.07  Aligned_cols=33  Identities=12%  Similarity=0.080  Sum_probs=26.8

Q ss_pred             ccCcEEEEEcCC---ChHHHHHHHHHHHhCCCcceEEEE
Q psy16528         24 YQNRSVFVTGGT---GFMGKVLVEKLLRSCPGIKNIYLL   59 (82)
Q Consensus        24 ~~~~~ilItG~t---G~iG~~i~~~l~~~g~~~~~V~~l   59 (82)
                      ++.++|.|.|+|   +-.|..+++.|.+.|+   .++.+
T Consensus        11 ~~pksIAVVGaS~~~~k~g~~v~~~L~~~g~---~~~~v   46 (136)
T d1iuka_          11 SQAKTIAVLGAHKDPSRPAHYVPRYLREQGY---RVLPV   46 (136)
T ss_dssp             HHCCEEEEETCCSSTTSHHHHHHHHHHHTTC---EEEEE
T ss_pred             hCCCeEEEEeecCCCCCchHHHHHHHhcCCC---CceEE
Confidence            467899999997   5789999999999987   44444

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.40  E-value=2.2  Score=23.31  Aligned_cols=31  Identities=19%  Similarity=0.284  Sum_probs=22.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEeCCC
Q psy16528         28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK   63 (82)
Q Consensus        28 ~ilItG~tG~iG~~i~~~l~~~g~~~~~V~~l~r~~   63 (82)
                      +|+|.|| |++|-.++..|.+ +.   .|..+.+.+
T Consensus         2 rVvIIGg-G~~G~e~A~~l~~-~~---~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGN-GPGGFELAKQLSQ-TY---EVTVIDKEP   32 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHTT-TS---EEEEECSSS
T ss_pred             eEEEECC-cHHHHHHHHHHHc-CC---CEEEEeccc
Confidence            5677665 6999999998865 44   677777643