Psyllid ID: psy16531


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
MVALYGTHFLGEPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPRVELKPSFNVTKDTLPIAISCDNNDD
ccHHHcccccccccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccccccHHHHccccccc
cEEEEcccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccccEEEEcccccc
mvalygthflgepppdwsllgrypqvffragvlgqmEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQsdllnprvelkpsfnvtkdtlpiaiscdnndd
MVALYGTHFLGEPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEqsqsdllnprvelkpsfnvtkdtlpiaiscdnndd
MVALYGTHFLGEPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPRVELKPSFNVTKDTLPIAISCDNNDD
***LYGTHFLGEPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRK********************************I*********
***L***HFLGEPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPRVELKPSFNVTKDTLP***S******
MVALYGTHFLGEPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPRVELKPSFNVTKDTLPIAISCDNNDD
MVALYGTHFLGEPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPRVELKPSFNVTKDTLPIAISCDN***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVALYGTHFLGEPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPRVELKPSFNVTKDTLPIAISCDNNDD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query104 2.2.26 [Sep-21-2011]
P05661 1962 Myosin heavy chain, muscl yes N/A 0.461 0.024 0.729 2e-15
P24733 1938 Myosin heavy chain, stria N/A N/A 0.442 0.023 0.608 4e-11
P49824 1935 Myosin-7 OS=Canis familia yes N/A 0.519 0.027 0.5 8e-09
P04461 736 Myosin-7 (Fragment) OS=Or no N/A 0.519 0.073 0.5 1e-08
Q28641 1938 Myosin-4 OS=Oryctolagus c no N/A 0.490 0.026 0.470 1e-08
Q5SX40 1942 Myosin-1 OS=Mus musculus yes N/A 0.490 0.026 0.470 1e-08
P79293 1935 Myosin-7 OS=Sus scrofa GN yes N/A 0.519 0.027 0.481 2e-08
Q9BE39 1935 Myosin-7 OS=Bos taurus GN yes N/A 0.519 0.027 0.481 2e-08
P12883 1935 Myosin-7 OS=Homo sapiens yes N/A 0.519 0.027 0.481 2e-08
P02564 1935 Myosin-7 OS=Rattus norveg no N/A 0.519 0.027 0.481 2e-08
>sp|P05661|MYSA_DROME Myosin heavy chain, muscle OS=Drosophila melanogaster GN=Mhc PE=1 SV=4 Back     alignment and function desciption
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/48 (72%), Positives = 43/48 (89%)

Query: 23  YPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70
           + +VFFRAGVLGQMEE RD+RLGKI+ WMQ++ RGYLSRK +KK+QEQ
Sbjct: 759 HTKVFFRAGVLGQMEEFRDERLGKIMSWMQAWARGYLSRKGFKKLQEQ 806




Muscle contraction.
Drosophila melanogaster (taxid: 7227)
>sp|P24733|MYS_ARGIR Myosin heavy chain, striated muscle OS=Argopecten irradians PE=1 SV=1 Back     alignment and function description
>sp|P49824|MYH7_CANFA Myosin-7 OS=Canis familiaris GN=MYH7 PE=1 SV=3 Back     alignment and function description
>sp|P04461|MYH7_RABIT Myosin-7 (Fragment) OS=Oryctolagus cuniculus GN=MYH7 PE=2 SV=1 Back     alignment and function description
>sp|Q28641|MYH4_RABIT Myosin-4 OS=Oryctolagus cuniculus GN=MYH4 PE=2 SV=1 Back     alignment and function description
>sp|Q5SX40|MYH1_MOUSE Myosin-1 OS=Mus musculus GN=Myh1 PE=1 SV=1 Back     alignment and function description
>sp|P79293|MYH7_PIG Myosin-7 OS=Sus scrofa GN=MYH7 PE=2 SV=2 Back     alignment and function description
>sp|Q9BE39|MYH7_BOVIN Myosin-7 OS=Bos taurus GN=MYH7 PE=2 SV=1 Back     alignment and function description
>sp|P12883|MYH7_HUMAN Myosin-7 OS=Homo sapiens GN=MYH7 PE=1 SV=5 Back     alignment and function description
>sp|P02564|MYH7_RAT Myosin-7 OS=Rattus norvegicus GN=Myh7 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query104
183979376 1965 muscle myosin heavy chain [Papilio xuthu 0.528 0.027 0.767 2e-16
307212786 2228 Myosin heavy chain, muscle [Harpegnathos 0.461 0.021 0.812 3e-16
340718032 1968 PREDICTED: myosin heavy chain, muscle-li 0.528 0.027 0.75 4e-16
234204033 791 myosin heavy chain variant B [Bombyx man 0.442 0.058 0.847 5e-16
197322816 791 myosin heavy chain [Bombyx mori] 0.442 0.058 0.847 5e-16
307190725 1076 Myosin heavy chain, muscle [Camponotus f 0.461 0.044 0.812 5e-16
234204059 792 myosin heavy chain variant B [Bombyx mor 0.442 0.058 0.847 5e-16
322786872 2417 hypothetical protein SINV_00390 [Solenop 0.461 0.019 0.791 5e-16
357625293 2002 hypothetical protein KGM_08594 [Danaus p 0.442 0.022 0.826 6e-16
229472619 791 myosin heavy chain [Bombyx mandarina] 0.442 0.058 0.847 6e-16
>gi|183979376|dbj|BAG30740.1| muscle myosin heavy chain [Papilio xuthus] Back     alignment and taxonomy information
 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/56 (76%), Positives = 49/56 (87%), Gaps = 1/56 (1%)

Query: 15  PDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70
           P+   LG + +VFFRAGVLGQMEELRDDRL KIV WMQ+Y+RGYLSRKEYKK+QEQ
Sbjct: 756 PESYRLG-HTKVFFRAGVLGQMEELRDDRLSKIVSWMQAYIRGYLSRKEYKKLQEQ 810




Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212786|gb|EFN88457.1| Myosin heavy chain, muscle [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|340718032|ref|XP_003397476.1| PREDICTED: myosin heavy chain, muscle-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|234204033|gb|ACQ91270.1| myosin heavy chain variant B [Bombyx mandarina] Back     alignment and taxonomy information
>gi|197322816|gb|ACH69159.1| myosin heavy chain [Bombyx mori] Back     alignment and taxonomy information
>gi|307190725|gb|EFN74640.1| Myosin heavy chain, muscle [Camponotus floridanus] Back     alignment and taxonomy information
>gi|234204059|gb|ACQ91273.1| myosin heavy chain variant B [Bombyx mori] Back     alignment and taxonomy information
>gi|322786872|gb|EFZ13136.1| hypothetical protein SINV_00390 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|357625293|gb|EHJ75789.1| hypothetical protein KGM_08594 [Danaus plexippus] Back     alignment and taxonomy information
>gi|229472619|gb|ACQ72824.1| myosin heavy chain [Bombyx mandarina] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query104
FB|FBgn0264695 1962 Mhc "Myosin heavy chain" [Dros 0.480 0.025 0.725 1.3e-13
UNIPROTKB|E2RJD1 1791 MYH7 "Myosin-7" [Canis lupus f 0.519 0.030 0.5 2.8e-08
ZFIN|ZDB-GENE-061027-393 1943 vmhcl "ventricular myosin heav 0.480 0.025 0.54 5.7e-08
UNIPROTKB|F1PDF4 1659 MYH7 "Myosin-7" [Canis lupus f 0.519 0.032 0.5 6.1e-08
UNIPROTKB|P49824 1935 MYH7 "Myosin-7" [Canis lupus f 0.519 0.027 0.5 7.2e-08
UNIPROTKB|F1MM07 1933 F1MM07 "Uncharacterized protei 0.519 0.027 0.481 1.9e-07
UNIPROTKB|F1S9D6 1934 MYH7 "Myosin-7" [Sus scrofa (t 0.519 0.027 0.481 1.9e-07
UNIPROTKB|Q9BE39 1935 MYH7 "Myosin-7" [Bos taurus (t 0.519 0.027 0.481 1.9e-07
UNIPROTKB|P12883 1935 MYH7 "Myosin-7" [Homo sapiens 0.519 0.027 0.481 1.9e-07
UNIPROTKB|P79293 1935 MYH7 "Myosin-7" [Sus scrofa (t 0.519 0.027 0.481 1.9e-07
FB|FBgn0264695 Mhc "Myosin heavy chain" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 193 (73.0 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 37/51 (72%), Positives = 45/51 (88%)

Query:    20 LGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70
             LG + +VFFRAGVLGQMEE RD+RLGKI+ WMQ++ RGYLSRK +KK+QEQ
Sbjct:   757 LG-HTKVFFRAGVLGQMEEFRDERLGKIMSWMQAWARGYLSRKGFKKLQEQ 806




GO:0006941 "striated muscle contraction" evidence=TAS
GO:0005863 "striated muscle myosin thick filament" evidence=IDA
GO:0008307 "structural constituent of muscle" evidence=IMP;TAS
GO:0005859 "muscle myosin complex" evidence=ISS;IDA
GO:0030017 "sarcomere" evidence=IDA
GO:0042803 "protein homodimerization activity" evidence=IDA
GO:0006936 "muscle contraction" evidence=IMP
GO:0040011 "locomotion" evidence=IMP
GO:0000146 "microfilament motor activity" evidence=ISS
GO:0005703 "polytene chromosome puff" evidence=IDA
GO:0007517 "muscle organ development" evidence=IMP
GO:0042623 "ATPase activity, coupled" evidence=ISS
GO:0016459 "myosin complex" evidence=ISS
GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP
GO:0005524 "ATP binding" evidence=IEA
GO:0030239 "myofibril assembly" evidence=IMP
GO:0007527 "adult somatic muscle development" evidence=IMP
GO:0030898 "actin-dependent ATPase activity" evidence=IDA
GO:0042692 "muscle cell differentiation" evidence=IMP
GO:0007298 "border follicle cell migration" evidence=IMP
GO:0060361 "flight" evidence=IMP
GO:0007427 "epithelial cell migration, open tracheal system" evidence=IMP
GO:0031672 "A band" evidence=IDA
GO:0050821 "protein stabilization" evidence=IMP
GO:0045214 "sarcomere organization" evidence=IMP
GO:0031033 "myosin filament organization" evidence=IMP
UNIPROTKB|E2RJD1 MYH7 "Myosin-7" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061027-393 vmhcl "ventricular myosin heavy chain-like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PDF4 MYH7 "Myosin-7" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P49824 MYH7 "Myosin-7" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MM07 F1MM07 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S9D6 MYH7 "Myosin-7" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BE39 MYH7 "Myosin-7" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P12883 MYH7 "Myosin-7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P79293 MYH7 "Myosin-7" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P05661MYSA_DROMENo assigned EC number0.72910.46150.0244yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query104
COG5022 1463 COG5022, COG5022, Myosin heavy chain [Cytoskeleton 7e-06
cd01377693 cd01377, MYSc_type_II, Myosin motor domain, type I 0.001
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
 Score = 42.4 bits (100), Expect = 7e-06
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEY-------KKIQEQSQSDLLNP 78
           VFF+AGVL  +E++RD +L  I   +Q  +RG   R+ Y       KKIQ       L  
Sbjct: 726 VFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRR 785

Query: 79  RVELKPSFN 87
            V+ +  + 
Sbjct: 786 LVDYELKWR 794


Length = 1463

>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 104
KOG0161|consensus 1930 99.62
COG5022 1463 Myosin heavy chain [Cytoskeleton] 99.51
KOG0164|consensus 1001 99.31
PTZ00014821 myosin-A; Provisional 99.3
KOG0162|consensus 1106 99.26
KOG0160|consensus 862 98.74
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 97.94
KOG0163|consensus 1259 97.93
cd01384674 MYSc_type_XI Myosin motor domain, plant-specific t 97.62
smart0001526 IQ Short calmodulin-binding motif containing conse 97.49
cd01378674 MYSc_type_I Myosin motor domain, type I myosins. M 97.36
cd01383677 MYSc_type_VIII Myosin motor domain, plant-specific 97.35
cd01386767 MYSc_type_XVIII Myosin motor domain, type XVIII my 97.34
cd01377693 MYSc_type_II Myosin motor domain, type II myosins. 97.24
smart00242677 MYSc Myosin. Large ATPases. ATPase; molecular moto 97.22
cd01382717 MYSc_type_VI Myosin motor domain, type VI myosins. 97.21
cd01380691 MYSc_type_V Myosin motor domain, type V myosins. M 97.19
cd01387677 MYSc_type_XV Myosin motor domain, type XV myosins. 97.13
cd01381671 MYSc_type_VII Myosin motor domain, type VII myosin 97.11
cd00124679 MYSc Myosin motor domain. This catalytic (head) do 96.96
cd01379653 MYSc_type_III Myosin motor domain, type III myosin 96.74
cd01385692 MYSc_type_IX Myosin motor domain, type IX myosins. 96.31
KOG0160|consensus 862 84.19
KOG4427|consensus 1096 80.95
>KOG0161|consensus Back     alignment and domain information
Probab=99.62  E-value=5.1e-16  Score=141.41  Aligned_cols=84  Identities=37%  Similarity=0.612  Sum_probs=79.7

Q ss_pred             CCCCceecCcCeeecccccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------
Q psy16531         14 PPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPR--------------   79 (104)
Q Consensus        14 ~~~~y~iGg~TKVF~r~g~l~~LE~~R~~~l~~~a~~iQ~~~RG~l~Rr~y~~~r~~~~A~~~IQ~--------------   79 (104)
                      +...|++| .||||||+|+++.||++|+..++.+++.+|+.||||++|+.|.+...+..|+.+||+              
T Consensus       743 d~~lyriG-~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~  821 (1930)
T KOG0161|consen  743 DKNLYRIG-HTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWW  821 (1930)
T ss_pred             ccceEeec-ceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHH
Confidence            34569999 999999999999999999999999999999999999999999999999999999999              


Q ss_pred             ---ccccccccCccchhhhhhc
Q psy16531         80 ---VELKPSFNVTKDTLPIAIS   98 (104)
Q Consensus        80 ---~~ikplL~~~~~~~~~~~~   98 (104)
                         .+|||||.+++++++++..
T Consensus       822 ~Lf~kvkPLL~~~~~ee~~~~~  843 (1930)
T KOG0161|consen  822 RLFTKVKPLLKVTKTEEEMRAK  843 (1930)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHh
Confidence               8999999999999998763



>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0164|consensus Back     alignment and domain information
>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>KOG0162|consensus Back     alignment and domain information
>KOG0160|consensus Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>KOG0163|consensus Back     alignment and domain information
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>cd01378 MYSc_type_I Myosin motor domain, type I myosins Back     alignment and domain information
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins Back     alignment and domain information
>cd01377 MYSc_type_II Myosin motor domain, type II myosins Back     alignment and domain information
>smart00242 MYSc Myosin Back     alignment and domain information
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins Back     alignment and domain information
>cd01380 MYSc_type_V Myosin motor domain, type V myosins Back     alignment and domain information
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins Back     alignment and domain information
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins Back     alignment and domain information
>cd00124 MYSc Myosin motor domain Back     alignment and domain information
>cd01379 MYSc_type_III Myosin motor domain, type III myosins Back     alignment and domain information
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins Back     alignment and domain information
>KOG0160|consensus Back     alignment and domain information
>KOG4427|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query104
1qvi_A840 Crystal Structure Of Scallop Myosin S1 In The Pre-P 2e-12
1kk7_A837 Scallop Myosin In The Near Rigor Conformation Lengt 2e-12
1b7t_A835 Myosin Digested By Papain Length = 835 2e-12
1dfk_A830 Nucleotide-Free Scallop Myosin S1-Near Rigor State 2e-12
1dfl_A831 Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra 2e-12
2ec6_A838 Placopecten Striated Muscle Myosin Ii Length = 838 2e-12
2os8_A840 Rigor-Like Structures Of Muscle Myosins Reveal Key 2e-12
3i5g_A839 Crystal Structure Of Rigor-Like Squid Myosin S1 Len 7e-12
2w4g_M840 Isometrically Contracting Insect Asynchronous Fligh 7e-09
1m8q_A840 Molecular Models Of Averaged Rigor Crossbridges Fro 8e-08
2mys_A843 Myosin Subfragment-1, Alpha Carbon Coordinates Only 8e-08
1br1_A820 Smooth Muscle Myosin Motor Domain-Essential Light C 1e-06
3dtp_A 971 Tarantula Heavy Meromyosin Obtained By Flexible Doc 1e-06
3j04_A909 Em Structure Of The Heavy Meromyosin Subfragment Of 1e-06
1i84_S 1184 Cryo-Em Structure Of The Heavy Meromyosin Subfragme 1e-06
3pn7_A69 Visualizing New Hinges And A Potential Major Source 2e-06
3dtp_B 973 Tarantula Heavy Meromyosin Obtained By Flexible Doc 3e-06
3jtd_A65 Calcium-Free Scallop Myosin Regulatory Domain With 7e-05
1wdc_A64 Scallop Myosin Regulatory Domain Length = 64 1e-04
1oe9_A795 Crystal Structure Of Myosin V Motor With Essential 7e-04
2dfs_A 1080 3-D Structure Of Myosin-V Inhibited State Length = 9e-04
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840 Back     alignment and structure

Iteration: 1

Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 28/46 (60%), Positives = 39/46 (84%) Query: 25 QVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70 +VFF+AGVLG +EE+RD+RL KI+ Q+++RGYL RK YKK+Q+Q Sbjct: 759 KVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQ 804
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837 Back     alignment and structure
>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835 Back     alignment and structure
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830 Back     alignment and structure
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831 Back     alignment and structure
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838 Back     alignment and structure
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840 Back     alignment and structure
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839 Back     alignment and structure
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840 Back     alignment and structure
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843 Back     alignment and structure
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820 Back     alignment and structure
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971 Back     alignment and structure
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909 Back     alignment and structure
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184 Back     alignment and structure
>pdb|3PN7|A Chain A, Visualizing New Hinges And A Potential Major Source Of Compliance In The Lever Arm Of Myosin Length = 69 Back     alignment and structure
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973 Back     alignment and structure
>pdb|3JTD|A Chain A, Calcium-Free Scallop Myosin Regulatory Domain With Elc-D19a Point Mutation Length = 65 Back     alignment and structure
>pdb|1WDC|A Chain A, Scallop Myosin Regulatory Domain Length = 64 Back     alignment and structure
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795 Back     alignment and structure
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query104
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 6e-16
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 3e-15
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-14
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 1e-12
2ycu_A 995 Non muscle myosin 2C, alpha-actinin; motor protein 3e-12
1g8x_A 1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-11
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 2e-08
2v26_A784 Myosin VI; calmodulin-binding, nucleotide-binding, 3e-07
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 4e-07
4db1_A783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 6e-06
1w9i_A770 Myosin II heavy chain; molecular motor, ATPase, mo 4e-04
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
 Score = 70.4 bits (173), Expect = 6e-16
 Identities = 28/48 (58%), Positives = 38/48 (79%)

Query: 26  VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQS 73
           VFF+AGVLG +EE+RD+RL KI+   Q+++RGYL RK YKK+Q+Q   
Sbjct: 760 VFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIG 807


>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Length = 64 Back     alignment and structure
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784 Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Length = 63 Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783 Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query104
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 99.73
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 99.61
4anj_A 1052 Unconventional myosin-VI, green fluorescent prote; 99.49
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 99.42
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 99.41
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 99.22
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 99.11
1g8x_A 1010 Myosin II heavy chain fused to alpha-actinin 3; mo 98.46
2ycu_A 995 Non muscle myosin 2C, alpha-actinin; motor protein 98.33
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 98.17
2v26_A784 Myosin VI; calmodulin-binding, nucleotide-binding, 98.08
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 98.03
1w9i_A770 Myosin II heavy chain; molecular motor, ATPase, mo 97.95
4db1_A783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 97.87
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 97.85
1lkx_A697 Myosin IE heavy chain; myosin motor domain, lever 97.59
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 96.82
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 95.44
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 95.41
3gn4_A148 Myosin-VI; unconventional myosin, motility, lever 95.39
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 94.97
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
Probab=99.73  E-value=4.7e-18  Score=145.10  Aligned_cols=72  Identities=47%  Similarity=0.761  Sum_probs=68.3

Q ss_pred             CCCCceecCcCeeecccccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------
Q psy16531         14 PPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPR--------------   79 (104)
Q Consensus        14 ~~~~y~iGg~TKVF~r~g~l~~LE~~R~~~l~~~a~~iQ~~~RG~l~Rr~y~~~r~~~~A~~~IQ~--------------   79 (104)
                      ++++|++| +||||||+|+++.||++|++++..+++.||++||||++|++|.+++.++.|+++||+              
T Consensus       749 ~~~~~~~G-~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~w~  827 (837)
T 1kk8_A          749 DPAEYRLG-TTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWW  827 (837)
T ss_dssp             CGGGEEEC-SSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             Cccceeec-CEEEEehhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHH
Confidence            35789999 999999999999999999999999999999999999999999999998999999999              


Q ss_pred             ---ccccccc
Q psy16531         80 ---VELKPSF   86 (104)
Q Consensus        80 ---~~ikplL   86 (104)
                         .+|||||
T Consensus       828 ~l~~kvkpll  837 (837)
T 1kk8_A          828 KLYSKVKPLL  837 (837)
T ss_dssp             HHHHHHGGGC
T ss_pred             HHHhhhccCC
Confidence               7888986



>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 104
d2mysa2794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 3e-15
d1kk8a2789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 8e-15
d1w7ja2730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 2e-14
d1d0xa2712 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain 5e-04
d1br2a2710 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick 7e-04
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
 Score = 67.4 bits (164), Expect = 3e-15
 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 10  LGEPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQE 69
                  +   G   +VFF+AG+LG +EE+RDD+L +I+   Q+  RG+L R EY+ + E
Sbjct: 702 GDVDHTQY-AFGHT-KVFFKAGLLGLLEEMRDDKLAEIITATQARCRGFLMRVEYRAMVE 759

Query: 70  QSQS 73
           + +S
Sbjct: 760 RRES 763


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712 Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query104
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 99.7
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 99.68
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 99.38
d1br2a2710 Myosin S1, motor domain {Chicken (Gallus gallus), 97.53
d1d0xa2712 Myosin S1, motor domain {Dictyostelium discoideum 97.31
d1lkxa_684 Myosin S1, motor domain {Dictyostelium discoideum, 97.09
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 82.93
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=99.70  E-value=8.2e-18  Score=140.67  Aligned_cols=73  Identities=36%  Similarity=0.601  Sum_probs=68.4

Q ss_pred             CCCCceecCcCeeecccccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------
Q psy16531         14 PPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPR--------------   79 (104)
Q Consensus        14 ~~~~y~iGg~TKVF~r~g~l~~LE~~R~~~l~~~a~~iQ~~~RG~l~Rr~y~~~r~~~~A~~~IQ~--------------   79 (104)
                      ++++|++| +||||||++++..||+.|++.+..+++.||++||||++|++|++++.++.|+++||+              
T Consensus       705 ~~~~~~iG-kTKVFlr~~~~~~LE~~r~~~l~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~~~~  783 (794)
T d2mysa2         705 DHTQYAFG-HTKVFFKAGLLGLLEEMRDDKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHWPWM  783 (794)
T ss_dssp             CSSSEEEE-TTEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcccEEeC-CCeEEeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            45789999 999999999999999999999999999999999999999999999888899999998              


Q ss_pred             ---cccccccc
Q psy16531         80 ---VELKPSFN   87 (104)
Q Consensus        80 ---~~ikplL~   87 (104)
                         .||+|||+
T Consensus       784 rl~~ki~pll~  794 (794)
T d2mysa2         784 KLFFKIKPLLK  794 (794)
T ss_dssp             HHHHHHTTTCC
T ss_pred             HHHHHhhhhcC
Confidence               67888885



>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure