Psyllid ID: psy16546

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK
Secondary Structure (PSIPRED)
cEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHHHcccccEEEcccccccHHHHcccHHHHHHHccccccccHHHHHc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccccEEcEEEHHHHHHHHHHHHHHHccccccEEEEEEcccccEEHHHHHHHHHHHHcccccEEEEccccccccEEcEccHHHHHHccccccccHHHHHH
Coil and Loop (DISEMBL)
mitvfgadygtedgtgirDYIHVMDLAVGHVAALNKLQGEHLKIKfynlgtgqgtSVLQLLRTFErvtgkpvpyIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK
Flexible Loop (DISEMBL)
mitvfgadygtedgTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTfervtgkpvpyiveARREGDIVSMYANTDLaqrelgwsarctvekmck
Low Complexity Region (SEG)
MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK
Disordered region (IsUnstruct)
**TVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTV*****
Disordered Region (DISOPRED)
MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK
Disordered Region (DISEMBL)
MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK
Disordered Region (DISPRO)
MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
Q14376	348	UDP-glucose 4-epimerase O	yes	N/A	0.981	0.313	0.581	1e-32
P18645	347	UDP-glucose 4-epimerase O	no	N/A	0.981	0.314	0.572	3e-32
Q5R8D0	348	UDP-glucose 4-epimerase O	yes	N/A	0.981	0.313	0.572	4e-32
Q8R059	347	UDP-glucose 4-epimerase O	yes	N/A	0.981	0.314	0.572	5e-32
Q9T0A7	350	UDP-glucose 4-epimerase 3	yes	N/A	0.990	0.314	0.545	9e-32
O65781	350	UDP-glucose 4-epimerase G	N/A	N/A	0.990	0.314	0.527	4e-31
Q9SN58	351	UDP-glucose 4-epimerase 2	no	N/A	0.990	0.313	0.527	1e-30
Q42605	351	UDP-glucose 4-epimerase 1	no	N/A	0.990	0.313	0.522	6e-29
O65780	354	UDP-glucose 4-epimerase G	N/A	N/A	0.990	0.310	0.522	9e-29
P55180	339	UDP-glucose 4-epimerase O	yes	N/A	0.972	0.318	0.541	6e-28

>sp|Q14376|GALE_HUMAN UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 83/110 (75%), Gaps = 1/110 (0%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + VFG DY TEDGTG+RDYIHV+DLA GH+AAL KL+ E    + YNLGTG G SVLQ++
Sbjct: 223 LNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLK-EQCGCRIYNLGTGTGYSVLQMV 281

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           +  E+ +GK +PY V ARREGD+ + YAN  LAQ ELGW+A   +++MC+
Sbjct: 282 QAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCE 331

Catalyzes two distinct but analogous reactions: the epimerization of UDP-glucose to UDP-galactose and the epimerization of UDP-N-acetylglucosamine to UDP-N-acetylgalactosamine.
Homo sapiens (taxid: 9606)
EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 2

>sp|P18645|GALE_RAT UDP-glucose 4-epimerase OS=Rattus norvegicus GN=Gale PE=2 SV=1

 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/110 (57%), Positives = 82/110 (74%), Gaps = 1/110 (0%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + VFG DY TEDGTG+RDYIHV+DLA GH+AAL KL+ E    + YNLGTG G SVLQ++
Sbjct: 222 LNVFGDDYATEDGTGVRDYIHVVDLAKGHIAALKKLK-EQCGCRIYNLGTGTGYSVLQMV 280

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           +  E+ +GK +PY V ARREGD+ + YAN  LA  ELGW+A   +++MC+
Sbjct: 281 QAMEKASGKKIPYKVVARREGDVAACYANPSLAHEELGWTAALGLDRMCE 330

Catalyzes two distinct but analogous reactions: the epimerization of UDP-glucose to UDP-galactose and the epimerization of UDP-N-acetylglucosamine to UDP-N-acetylgalactosamine.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|Q5R8D0|GALE_PONAB UDP-glucose 4-epimerase OS=Pongo abelii GN=GALE PE=2 SV=1

 Score =  136 bits (342), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/110 (57%), Positives = 82/110 (74%), Gaps = 1/110 (0%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + VFG DY TEDGTG+RDYIHV+DLA GH+AAL KL+ E    + YNLGTG G SVLQ++
Sbjct: 223 LNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLK-EQCGCRIYNLGTGTGYSVLQMV 281

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           +  E+ +GK +PY V ARREGD+ + YAN  LA  ELGW+A   +++MC+
Sbjct: 282 QAMEKASGKKIPYKVVARREGDVAACYANPSLAHEELGWTAALGLDRMCE 331

Catalyzes two distinct but analogous reactions: the epimerization of UDP-glucose to UDP-galactose and the epimerization of UDP-N-acetylglucosamine to UDP-N-acetylgalactosamine.

Pongo abelii (taxid: 9601)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|Q8R059|GALE_MOUSE UDP-glucose 4-epimerase OS=Mus musculus GN=Gale PE=2 SV=1

 Score =  136 bits (342), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 63/110 (57%), Positives = 82/110 (74%), Gaps = 1/110 (0%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + VFG DY TEDGTG+RDYIHV+DLA GH+AAL KL+ E    + YNLGTG G SVLQ++
Sbjct: 222 LNVFGDDYATEDGTGVRDYIHVVDLAKGHIAALKKLK-EQCGCRTYNLGTGTGYSVLQMV 280

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           +  E+ +GK +PY V ARREGD+ + YAN  LA  ELGW+A   +++MC+
Sbjct: 281 QAMEKASGKKIPYKVVARREGDVAACYANPSLAHEELGWTAALGLDRMCE 330

Catalyzes two distinct but analogous reactions: the epimerization of UDP-glucose to UDP-galactose and the epimerization of UDP-N-acetylglucosamine to UDP-N-acetylgalactosamine.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|Q9T0A7|GALE3_ARATH UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g23920 PE=2 SV=1

 Score =  135 bits (339), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 82/110 (74%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           +TVFG DY T+DGTG+RDYIHVMDLA GH+AAL KL    +  + YNLGTG GTSVL+++
Sbjct: 219 LTVFGTDYKTKDGTGVRDYIHVMDLADGHIAALRKLDDLKISCEVYNLGTGNGTSVLEMV 278

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             FE+ +GK +P ++  RR GD   +YA+T+ A+REL W A+  +E+MC+
Sbjct: 279 AAFEKASGKKIPLVMAGRRPGDAEVVYASTEKAERELNWKAKNGIEEMCR 328

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|O65781|GALE2_CYATE UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetragonoloba PE=2 SV=1

 Score =  132 bits (333), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 83/110 (75%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           +TVFG DY T DGTG+RDYIHV+DLA GH+AAL KL    +  + YNLGTG+GTSVL+++
Sbjct: 220 LTVFGNDYTTSDGTGVRDYIHVVDLADGHIAALRKLNDPKIGCEVYNLGTGKGTSVLEMV 279

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           + FE+ +GK +P ++  RR GD   +YA+T+ A+REL W A+  +++MC+
Sbjct: 280 KAFEQASGKKIPLVMAGRRPGDAEVVYASTNKAERELNWKAKYGIDEMCR 329

Cyamopsis tetragonoloba (taxid: 3832)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|Q9SN58|GALE2_ARATH UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana GN=At4g10960 PE=2 SV=3

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 82/110 (74%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           +TVFG DY T+DGTG+RDYIHV+DLA GH+AAL KL+   +  + YNLGTG GTSVL+++
Sbjct: 220 LTVFGNDYNTKDGTGVRDYIHVIDLADGHIAALRKLEDCKIGCEVYNLGTGNGTSVLEMV 279

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             FE+ +GK +P ++  RR GD   +YA+T+ A+ EL W A+  +E+MC+
Sbjct: 280 DAFEKASGKKIPLVIAGRRPGDAEVVYASTERAESELNWKAKYGIEEMCR 329

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|Q42605|GALE1_ARATH UDP-glucose 4-epimerase 1 OS=Arabidopsis thaliana GN=At1g12780 PE=1 SV=2

 Score =  125 bits (315), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 58/111 (52%), Positives = 82/111 (73%), Gaps = 1/111 (0%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGE-HLKIKFYNLGTGQGTSVLQL 60
           + V+G DY TEDG+ +RDYIHVMDLA GH+AAL KL  +  +    YNLGTGQGTSVL++
Sbjct: 224 LNVYGHDYPTEDGSAVRDYIHVMDLADGHIAALRKLFADPKIGCTAYNLGTGQGTSVLEM 283

Query: 61  LRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           +  FE+ +GK +P  +  RR GD  ++YA+T+ A++ELGW A+  V++MC+
Sbjct: 284 VAAFEKASGKKIPIKLCPRRSGDATAVYASTEKAEKELGWKAKYGVDEMCR 334

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|O65780|GALE1_CYATE UDP-glucose 4-epimerase GEPI42 OS=Cyamopsis tetragonoloba PE=2 SV=1

 Score =  125 bits (314), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 58/111 (52%), Positives = 83/111 (74%), Gaps = 1/111 (0%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKL-QGEHLKIKFYNLGTGQGTSVLQL 60
           + ++G DY T+DGT IRDYIHVMDLA GH+AAL KL   +++    YNLGTG+GTSVL++
Sbjct: 227 LNIYGHDYPTKDGTAIRDYIHVMDLADGHIAALRKLFTTDNIGCTAYNLGTGRGTSVLEM 286

Query: 61  LRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           +  FE+ +GK +P  +  RR GD  ++YA+T+ A++ELGW A+  VE+MC+
Sbjct: 287 VAAFEKASGKKIPIKMCPRRPGDATAVYASTEKAEKELGWKAKYGVEEMCR 337

Cyamopsis tetragonoloba (taxid: 3832)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|P55180|GALE_BACSU UDP-glucose 4-epimerase OS=Bacillus subtilis (strain 168) GN=galE PE=3 SV=1

 Score =  122 bits (307), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 59/109 (54%), Positives = 78/109 (71%), Gaps = 1/109 (0%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           ++VFG DY T+DGTG+RDYIHV+DLA GHV AL K+         YNLGTG G SVL+++
Sbjct: 214 LSVFGNDYPTKDGTGVRDYIHVVDLAEGHVKALEKVLNS-TGADAYNLGTGTGYSVLEMV 272

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMC 110
           + FE+V+GK VPY    RR GDI + +A+   A+RELGW A+  +E+MC
Sbjct: 273 KAFEKVSGKEVPYRFADRRPGDIATCFADPAKAKRELGWEAKRGLEEMC 321

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
307172266	344	UDP-glucose 4-epimerase [Camponotus flor	0.990	0.319	0.681	3e-41
332022429	364	Putative UDP-glucose 4-epimerase [Acromy	0.990	0.302	0.681	4e-41
307197296	364	UDP-glucose 4-epimerase [Harpegnathos sa	0.990	0.302	0.690	5e-41
322796795	364	hypothetical protein SINV_11980 [Solenop	0.981	0.299	0.678	8e-41
48105285	363	PREDICTED: probable UDP-glucose 4-epimer	0.990	0.303	0.672	4e-40
380027263	363	PREDICTED: probable UDP-glucose 4-epimer	0.990	0.303	0.663	7e-40
383863089	364	PREDICTED: probable UDP-glucose 4-epimer	0.990	0.302	0.663	2e-39
242017036	384	UDP-glucose 4-epimerase, putative [Pedic	0.990	0.286	0.663	5e-39
340720162	364	PREDICTED: probable UDP-glucose 4-epimer	0.990	0.302	0.663	6e-39
156539983	360	PREDICTED: probable UDP-glucose 4-epimer	0.990	0.305	0.645	3e-38

>gi|307172266|gb|EFN63771.1| UDP-glucose 4-epimerase [Camponotus floridanus]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 75/110 (68%), Positives = 94/110 (85%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +FG DY T DGTG+RDYIHVMDLA GHVAALN L  +HL++K YNLGTG G +VL+L+
Sbjct: 206 LLIFGGDYATNDGTGVRDYIHVMDLAAGHVAALNALHKQHLRLKIYNLGTGNGVTVLELI 265

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           +TFE+VTG  VPYI++ RREGDIVSMYANTDLA++ELGW+A+  VE+MC+
Sbjct: 266 KTFEKVTGTTVPYIIKERREGDIVSMYANTDLAKKELGWTAKYNVEQMCQ 315

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022429|gb|EGI62737.1| Putative UDP-glucose 4-epimerase [Acromyrmex echinatior]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 75/110 (68%), Positives = 94/110 (85%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +FG DY T DGTG+RDYIHVMDLA GHVAALN L  +HL++K YNLGTG G +VL+L+
Sbjct: 226 LIIFGGDYPTNDGTGVRDYIHVMDLAAGHVAALNALHKQHLRLKIYNLGTGNGVTVLELI 285

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           +TFE+VTG  VPYI++ RREGDIVSMYANTDLA++ELGW+A+  VE+MC+
Sbjct: 286 KTFEKVTGTTVPYIIKERREGDIVSMYANTDLAKKELGWTAKYNVEQMCQ 335

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197296|gb|EFN78588.1| UDP-glucose 4-epimerase [Harpegnathos saltator]

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 76/110 (69%), Positives = 93/110 (84%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +FG DY T+DGTGIRDYIHVMDLA GHVAALN L  EHL++K YNLGTG+G SVL+L+
Sbjct: 226 LIIFGGDYPTKDGTGIRDYIHVMDLAAGHVAALNALHKEHLRLKIYNLGTGKGVSVLELI 285

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           +TFE +TG  VPYI++ RREGDIVSMYANTDLA+ ELGW+ +  VE+MC+
Sbjct: 286 KTFENITGTTVPYIIKERREGDIVSMYANTDLAKEELGWTTKYNVEQMCQ 335

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796795|gb|EFZ19222.1| hypothetical protein SINV_11980 [Solenopsis invicta]

 Score =  170 bits (431), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 93/109 (85%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +FG DY TEDGTG+RDYIHVMDLA GHVAALN L  +HL++K YNLGTG G +VL+L+
Sbjct: 226 LIIFGGDYPTEDGTGVRDYIHVMDLAAGHVAALNALHKQHLRLKIYNLGTGNGVTVLELI 285

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMC 110
           +TFE+VTG  VPY+++ RREGDIVSMYANTDLA++EL W+A+  VE+MC
Sbjct: 286 KTFEKVTGTTVPYVIKERREGDIVSMYANTDLAKKELNWTAKYNVEQMC 334

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48105285|ref|XP_393006.1| PREDICTED: probable UDP-glucose 4-epimerase-like [Apis mellifera]

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 74/110 (67%), Positives = 93/110 (84%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +FG DY T+DGTGIRDYIHVMDLA GHVAALN L  +HL++K YNLGTG+G SVL+L+
Sbjct: 225 LVIFGGDYPTKDGTGIRDYIHVMDLAAGHVAALNALYKQHLRLKIYNLGTGKGVSVLELI 284

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           + FE VTG  VPY+++ RREGDIVSMYANTDLA++ELGW+ +  VE+MC+
Sbjct: 285 KIFENVTGTTVPYVIKDRREGDIVSMYANTDLAEKELGWTTKYNVERMCE 334

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027263|ref|XP_003697348.1| PREDICTED: probable UDP-glucose 4-epimerase-like [Apis florea]

 Score =  167 bits (423), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 73/110 (66%), Positives = 93/110 (84%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +FG DY T+DGTGIRDYIHVMDLA GHVAALN L  +HL++K YNLGTG+G SVL+L+
Sbjct: 225 LIIFGGDYPTKDGTGIRDYIHVMDLAAGHVAALNALHKQHLRLKIYNLGTGKGVSVLELI 284

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           + FE VTG  VPY+++ RR+GDIVSMYANTDLA++ELGW+ +  VE+MC+
Sbjct: 285 KIFENVTGTTVPYVIKDRRDGDIVSMYANTDLAEKELGWTTKYNVERMCE 334

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863089|ref|XP_003707015.1| PREDICTED: probable UDP-glucose 4-epimerase-like [Megachile rotundata]

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 73/110 (66%), Positives = 92/110 (83%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +FG +Y T+DGTGIRDYIHVMDLA GHVAALN L  +H ++K YNLGTG+G SVL+L+
Sbjct: 226 LVIFGGNYPTKDGTGIRDYIHVMDLAAGHVAALNALHKQHSRLKIYNLGTGKGVSVLELI 285

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           +TFE VTG  VPY+++ RREGDIVSMYANTDLA++ELGW  +  VE+MC+
Sbjct: 286 KTFENVTGTTVPYVIKDRREGDIVSMYANTDLAEKELGWRTKYNVEQMCE 335

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017036|ref|XP_002428999.1| UDP-glucose 4-epimerase, putative [Pediculus humanus corporis] gi|212513845|gb|EEB16261.1| UDP-glucose 4-epimerase, putative [Pediculus humanus corporis]

 Score =  164 bits (416), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 73/110 (66%), Positives = 91/110 (82%)

Query: 1   MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQL 60
           ++ VFG DY T DGTG+RDYIHVMDLA GHVAALNKL+ +H+++K YNLGTGQGTSVLQL
Sbjct: 224 ILHVFGGDYDTVDGTGVRDYIHVMDLASGHVAALNKLKNQHIRLKSYNLGTGQGTSVLQL 283

Query: 61  LRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMC 110
           L+TFE VT  P+P++++ RREGDIV+MYAN  LA  ELGW  + T+ +MC
Sbjct: 284 LKTFESVTKVPIPFVIKERREGDIVAMYANASLAYEELGWKTKYTLAEMC 333

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720162|ref|XP_003398512.1| PREDICTED: probable UDP-glucose 4-epimerase-like [Bombus terrestris] gi|350408358|ref|XP_003488377.1| PREDICTED: probable UDP-glucose 4-epimerase-like [Bombus impatiens]

 Score =  164 bits (415), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 73/110 (66%), Positives = 90/110 (81%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +FG DY T+DGTGIRDYIHVMDLA GHVAALN L   HL++K YNLGTG+G SVL+L+
Sbjct: 226 LIIFGGDYPTKDGTGIRDYIHVMDLAAGHVAALNALHKRHLRLKIYNLGTGKGVSVLELI 285

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           + FE VTG  VPY+++ RREGDIVSMYANTDLA++EL W  +  VE+MC+
Sbjct: 286 KIFENVTGTTVPYVIKDRREGDIVSMYANTDLAEKELEWRTKFNVERMCE 335

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156539983|ref|XP_001602357.1| PREDICTED: probable UDP-glucose 4-epimerase-like isoform 1 [Nasonia vitripennis] gi|345496979|ref|XP_003427868.1| PREDICTED: probable UDP-glucose 4-epimerase-like isoform 2 [Nasonia vitripennis]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 93/110 (84%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           +T+FG DY T+DGTGIRDYIH+MDLA GHVAAL+ L  +H ++K YNLGTG G SVL+L+
Sbjct: 228 LTIFGGDYPTKDGTGIRDYIHIMDLASGHVAALHALHKQHNRLKIYNLGTGSGVSVLELV 287

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           +TFE+VTG  VPY+++ RR+GDIVSM+ANT LA+ ELGW A+ +VE+MC+
Sbjct: 288 KTFEKVTGTCVPYVIKDRRDGDIVSMFANTSLAENELGWKAKYSVEQMCQ 337

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
UNIPROTKB|Q14376	348	GALE "UDP-glucose 4-epimerase"	0.981	0.313	0.581	1.6e-31
UNIPROTKB|Q3T105	348	GALE "Uncharacterized protein"	0.990	0.316	0.576	2e-31
UNIPROTKB|I3LL84	348	GALE "Uncharacterized protein"	0.981	0.313	0.581	2e-31
RGD|621493	347	Gale "UDP-galactose-4-epimeras	0.981	0.314	0.572	4.2e-31
UNIPROTKB|Q4QRB0	348	Gale "Gale protein" [Rattus no	0.981	0.313	0.572	4.2e-31
MGI|MGI:1921496	347	Gale "galactose-4-epimerase, U	0.981	0.314	0.572	6.9e-31
TAIR|locus:2138121	350	UGE2 "UDP-D-glucose/UDP-D-gala	0.990	0.314	0.545	1.1e-30
UNIPROTKB|F1NWE5	351	GALE "Uncharacterized protein"	0.981	0.310	0.563	2.3e-30
UNIPROTKB|F1PI88	348	GALE "Uncharacterized protein"	0.990	0.316	0.549	6.2e-30
TAIR|locus:2123466	351	UGE5 "UDP-D-glucose/UDP-D-gala	0.990	0.313	0.527	1e-29

UNIPROTKB|Q14376 GALE "UDP-glucose 4-epimerase" [Homo sapiens (taxid:9606)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 64/110 (58%), Positives = 83/110 (75%)

Query:     2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
             + VFG DY TEDGTG+RDYIHV+DLA GH+AAL KL+ E    + YNLGTG G SVLQ++
Sbjct:   223 LNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLK-EQCGCRIYNLGTGTGYSVLQMV 281

Query:    62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             +  E+ +GK +PY V ARREGD+ + YAN  LAQ ELGW+A   +++MC+
Sbjct:   282 QAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCE 331

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0003978 "UDP-glucose 4-epimerase activity" evidence=EXP;IDA

GO:0019388 "galactose catabolic process" evidence=IDA;TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|Q3T105 GALE "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 64/111 (57%), Positives = 84/111 (75%)

Query:     1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQL 60
             ++ VFG DY TEDGTG+RDYIHV+DLA GH+AAL KL+ E    + YNLGTG G SVLQ+
Sbjct:   222 VLNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLK-EQCGCRIYNLGTGTGYSVLQM 280

Query:    61 LRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             ++  E+ +GK +PY V ARREGD+ + YAN  LA +ELGWSA   +++MC+
Sbjct:   281 VQAMEKASGKKIPYKVVARREGDVAACYANPSLALKELGWSAALGLDRMCE 331

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0019388 "galactose catabolic process" evidence=IEA

GO:0003978 "UDP-glucose 4-epimerase activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|I3LL84 GALE "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 64/110 (58%), Positives = 83/110 (75%)

Query:     2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
             + VFG DY TEDGTG+RDYIHV+DLA GH+AAL KL+ E    + YNLGTG G SVLQ++
Sbjct:   223 LNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLK-EQCGCRIYNLGTGTGYSVLQMV 281

Query:    62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             R  E+ +GK +PY V ARREGD+ + YAN  LA +ELGW+A   +++MC+
Sbjct:   282 RAMEKASGKKIPYKVVARREGDVAACYANPSLALKELGWTAALGLDRMCE 331

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0019388 "galactose catabolic process" evidence=IEA

GO:0003978 "UDP-glucose 4-epimerase activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

RGD|621493 Gale "UDP-galactose-4-epimerase" [Rattus norvegicus (taxid:10116)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 63/110 (57%), Positives = 82/110 (74%)

Query:     2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
             + VFG DY TEDGTG+RDYIHV+DLA GH+AAL KL+ E    + YNLGTG G SVLQ++
Sbjct:   222 LNVFGDDYATEDGTGVRDYIHVVDLAKGHIAALKKLK-EQCGCRIYNLGTGTGYSVLQMV 280

Query:    62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             +  E+ +GK +PY V ARREGD+ + YAN  LA  ELGW+A   +++MC+
Sbjct:   281 QAMEKASGKKIPYKVVARREGDVAACYANPSLAHEELGWTAALGLDRMCE 330

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003978 "UDP-glucose 4-epimerase activity" evidence=IEA;ISO

GO:0006012 "galactose metabolic process" evidence=IEA;ISO

GO:0019388 "galactose catabolic process" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

UNIPROTKB|Q4QRB0 Gale "Gale protein" [Rattus norvegicus (taxid:10116)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 63/110 (57%), Positives = 82/110 (74%)

Query:     2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
             + VFG DY TEDGTG+RDYIHV+DLA GH+AAL KL+ E    + YNLGTG G SVLQ++
Sbjct:   223 LNVFGDDYATEDGTGVRDYIHVVDLAKGHIAALKKLK-EQCGCRIYNLGTGTGYSVLQMV 281

Query:    62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             +  E+ +GK +PY V ARREGD+ + YAN  LA  ELGW+A   +++MC+
Sbjct:   282 QAMEKASGKKIPYKVVARREGDVAACYANPSLAHEELGWTAALGLDRMCE 331

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

MGI|MGI:1921496 Gale "galactose-4-epimerase, UDP" [Mus musculus (taxid:10090)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 63/110 (57%), Positives = 82/110 (74%)

Query:     2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
             + VFG DY TEDGTG+RDYIHV+DLA GH+AAL KL+ E    + YNLGTG G SVLQ++
Sbjct:   222 LNVFGDDYATEDGTGVRDYIHVVDLAKGHIAALKKLK-EQCGCRTYNLGTGTGYSVLQMV 280

Query:    62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             +  E+ +GK +PY V ARREGD+ + YAN  LA  ELGW+A   +++MC+
Sbjct:   281 QAMEKASGKKIPYKVVARREGDVAACYANPSLAHEELGWTAALGLDRMCE 330

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003978 "UDP-glucose 4-epimerase activity" evidence=ISO;IDA

GO:0005575 "cellular_component" evidence=ND

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006012 "galactose metabolic process" evidence=IDA

GO:0016853 "isomerase activity" evidence=IEA

GO:0016857 "racemase and epimerase activity, acting on carbohydrates and derivatives" evidence=IEA

GO:0019388 "galactose catabolic process" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

TAIR|locus:2138121 UGE2 "UDP-D-glucose/UDP-D-galactose 4-epimerase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 60/110 (54%), Positives = 82/110 (74%)

Query:     2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
             +TVFG DY T+DGTG+RDYIHVMDLA GH+AAL KL    +  + YNLGTG GTSVL+++
Sbjct:   219 LTVFGTDYKTKDGTGVRDYIHVMDLADGHIAALRKLDDLKISCEVYNLGTGNGTSVLEMV 278

Query:    62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
               FE+ +GK +P ++  RR GD   +YA+T+ A+REL W A+  +E+MC+
Sbjct:   279 AAFEKASGKKIPLVMAGRRPGDAEVVYASTEKAERELNWKAKNGIEEMCR 328

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003978 "UDP-glucose 4-epimerase activity" evidence=IEA;IGI;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006012 "galactose metabolic process" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0046983 "protein dimerization activity" evidence=IPI

GO:0042546 "cell wall biogenesis" evidence=IMP

UNIPROTKB|F1NWE5 GALE "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 62/110 (56%), Positives = 83/110 (75%)

Query:     2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
             ++VFG DY T DGTGIRDYIHV+DLA GH+AAL KL+ E+   K YNLGTG G SVLQ++
Sbjct:   227 LSVFGNDYETADGTGIRDYIHVVDLAKGHIAALKKLK-ENCGCKIYNLGTGTGYSVLQMV 285

Query:    62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             +  E+ +G+ + Y +  RREGD+ + YAN +LA+RELGW A   ++KMC+
Sbjct:   286 QAMEKASGREIKYKITGRREGDVAACYANPELAERELGWKAAFGLDKMCE 335

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0003978 "UDP-glucose 4-epimerase activity" evidence=IEA

GO:0019388 "galactose catabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

UNIPROTKB|F1PI88 GALE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 61/111 (54%), Positives = 83/111 (74%)

Query:     1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQL 60
             ++ VFG DY TEDGTG+RDYIHV+DLA GH+AAL KL+ E    + YNLGTG G SVLQ+
Sbjct:   222 VLNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLK-EQCGCRIYNLGTGTGYSVLQM 280

Query:    61 LRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             +   ++ +G+ +PY V ARREGD+ + YAN  LA +ELGW+A   +++MC+
Sbjct:   281 VEAMKKASGQEIPYKVVARREGDVAACYANPSLALKELGWTAVLGLDRMCE 331

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0019388 "galactose catabolic process" evidence=IEA

GO:0003978 "UDP-glucose 4-epimerase activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TAIR|locus:2123466 UGE5 "UDP-D-glucose/UDP-D-galactose 4-epimerase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 58/110 (52%), Positives = 82/110 (74%)

Query:     2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
             +TVFG DY T+DGTG+RDYIHV+DLA GH+AAL KL+   +  + YNLGTG GTSVL+++
Sbjct:   220 LTVFGNDYNTKDGTGVRDYIHVIDLADGHIAALRKLEDCKIGCEVYNLGTGNGTSVLEMV 279

Query:    62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
               FE+ +GK +P ++  RR GD   +YA+T+ A+ EL W A+  +E+MC+
Sbjct:   280 DAFEKASGKKIPLVIAGRRPGDAEVVYASTERAESELNWKAKYGIEEMCR 329

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003978 "UDP-glucose 4-epimerase activity" evidence=IEA;IDA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006012 "galactose metabolic process" evidence=IEA

GO:0016857 "racemase and epimerase activity, acting on carbohydrates and derivatives" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P55180	GALE_BACSU	5, ., 1, ., 3, ., 2	0.5412	0.9729	0.3185	yes	N/A
Q5R8D0	GALE_PONAB	5, ., 1, ., 3, ., 2	0.5727	0.9819	0.3132	yes	N/A
Q9T0A7	GALE3_ARATH	5, ., 1, ., 3, ., 2	0.5454	0.9909	0.3142	yes	N/A
Q8R059	GALE_MOUSE	5, ., 1, ., 3, ., 2	0.5727	0.9819	0.3141	yes	N/A
Q14376	GALE_HUMAN	5, ., 1, ., 3, ., 2	0.5818	0.9819	0.3132	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	111
cd05247	323	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase,	3e-53
PLN02240	352	PLN02240, PLN02240, UDP-glucose 4-epimerase	7e-51
COG1087	329	COG1087, GalE, UDP-glucose 4-epimerase [Cell envel	2e-48
TIGR01179	328	TIGR01179, galE, UDP-glucose-4-epimerase GalE	9e-41
PRK10675	338	PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro	3e-37
pfam13950	62	pfam13950, Epimerase_Csub, UDP-glucose 4-epimerase	2e-22
cd05256	304	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e	5e-14
cd05264	300	cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase	1e-13
COG0451	314	COG0451, WcaG, Nucleoside-diphosphate-sugar epimer	1e-10
cd05253	332	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera	9e-10
cd05258	337	cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e	1e-07
cd05246	315	cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra	5e-07
TIGR01181	317	TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd	7e-06
COG1088	340	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel	9e-06
pfam01370	233	pfam01370, Epimerase, NAD dependent epimerase/dehy	1e-04
cd05228	318	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr	7e-04
cd05260	316	cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase	0.001
TIGR03466	328	TIGR03466, HpnA, hopanoid-associated sugar epimera	0.002
cd05252	336	cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata	0.004

>gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs

 Score =  168 bits (429), Expect = 3e-53
 Identities = 55/110 (50%), Positives = 75/110 (68%), Gaps = 1/110 (0%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +FG DY T DGT +RDYIHV+DLA  HV AL KL+      + YNLGTG+G SVL+++
Sbjct: 208 LAIFGDDYPTPDGTCVRDYIHVVDLADAHVLALEKLE-NGGGSEIYNLGTGRGYSVLEVV 266

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             FE+V+GKP+PY +  RR GD  S+ A+   A+ ELGW  +  +E MC+
Sbjct: 267 EAFEKVSGKPIPYEIAPRRAGDPASLVADPSKAREELGWKPKRDLEDMCE 316

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323

>gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase

 Score =  163 bits (415), Expect = 7e-51
 Identities = 59/111 (53%), Positives = 84/111 (75%), Gaps = 1/111 (0%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGE-HLKIKFYNLGTGQGTSVLQL 60
           +TVFG DY T+DGTG+RDYIHVMDLA GH+AAL KL  +  +  + YNLGTG+GTSVL++
Sbjct: 222 LTVFGNDYPTKDGTGVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEM 281

Query: 61  LRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           +  FE+ +GK +P  +  RR GD   +YA+T+ A++ELGW A+  +++MC+
Sbjct: 282 VAAFEKASGKKIPLKLAPRRPGDAEEVYASTEKAEKELGWKAKYGIDEMCR 332

Length = 352

>gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

 Score =  156 bits (398), Expect = 2e-48
 Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 6/113 (5%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQ--GEHLKIKFYNLGTGQGTSVLQ 59
           + +FG DY T+DGT IRDYIHV DLA  HV AL  L+  G +     +NLG+G G SVL+
Sbjct: 206 LFIFGDDYDTKDGTCIRDYIHVDDLADAHVLALKYLKEGGSNN---IFNLGSGNGFSVLE 262

Query: 60  LLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSA-RCTVEKMCK 111
           ++   ++VTG+ +P  +  RR GD   + A++  A++ LGW      +E + K
Sbjct: 263 VIEAAKKVTGRDIPVEIAPRRAGDPAILVADSSKARQILGWQPTYDDLEDIIK 315

Length = 329

>gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE

 Score =  136 bits (345), Expect = 9e-41
 Identities = 52/111 (46%), Positives = 69/111 (62%), Gaps = 2/111 (1%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           +T+FG DY T DGT +RDYIHVMDLA  H+AAL  L         YNLG GQG SVL+++
Sbjct: 210 LTIFGTDYPTPDGTCVRDYIHVMDLADAHLAALEYLLNGG-GSHVYNLGYGQGFSVLEVI 268

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSA-RCTVEKMCK 111
             F++V+GK  P  +  RR GD  S+ A+    +RELGW      +E++ K
Sbjct: 269 EAFKKVSGKDFPVELAPRRPGDPASLVADASKIRRELGWQPKYTDLEEIIK 319

Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328

>gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional

 Score =  127 bits (321), Expect = 3e-37
 Identities = 55/108 (50%), Positives = 72/108 (66%), Gaps = 1/108 (0%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +FG DY TEDGTG+RDYIHVMDLA GHVAA+ KL  +   +  YNLG G G+SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVAAMEKLANKP-GVHIYNLGAGVGSSVLDVV 273

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKM 109
             F +  GKPV Y    RREGD+ + +A+   A REL W    T+++M
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEM 321

Length = 338

>gnl|CDD|206121 pfam13950, Epimerase_Csub, UDP-glucose 4-epimerase C-term subunit

 Score = 82.1 bits (204), Expect = 2e-22
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 63  TFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
            FE+ +GK +PY +  RR GD+   YA+   A++ELGW A   +E MC+
Sbjct: 1   AFEKASGKKIPYEIVPRRPGDVAECYADPSKAEKELGWKAERGLEDMCR 49

This domain is the very C-terminal subunit of UDP-glucose 4-epimerase. Length = 62

>gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs

 Score = 65.3 bits (160), Expect = 5e-14
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 12/106 (11%)

Query: 3   TVFGADYGTEDGTGIRDYIHVMDLAVGHVAAL-NKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           T++G      DG   RD+ +V D+   ++ A      GE      YN+GTG+ TSV +L 
Sbjct: 200 TIYG------DGEQTRDFTYVEDVVEANLLAATAGAGGE-----VYNIGTGKRTSVNELA 248

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVE 107
                + GK +  +    R GD+    A+   A++ LGW  + + E
Sbjct: 249 ELIREILGKELEPVYAPPRPGDVRHSLADISKAKKLLGWEPKVSFE 294

This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304

>gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs

 Score = 64.3 bits (157), Expect = 1e-13
 Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 14/112 (12%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           I ++G      DG  IRDYI++ DL    +A L + +G     + +N+G+G G S+ +L+
Sbjct: 195 IEIWG------DGESIRDYIYIDDLVEALMALL-RSKGLE---EVFNIGSGIGYSLAELI 244

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWS----ARCTVEKM 109
              E+VTG+ V  I    R  D+  +  +   A+ ELGWS        +EK 
Sbjct: 245 AEIEKVTGRSVQVIYTPARTTDVPKIVLDISRARAELGWSPKISLEDGLEKT 296

This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300

>gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 56.1 bits (135), Expect = 1e-10
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 9/100 (9%)

Query: 12  EDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG-TSVLQLLRTFERVTGK 70
            DG+  RD+++V D+A   + AL     E+     +N+G+G    +V +L        G 
Sbjct: 204 GDGSQTRDFVYVDDVADALLLAL-----ENPDGGVFNIGSGTAEITVRELAEAVAEAVGS 258

Query: 71  PVPYIV--EARREGDIV-SMYANTDLAQRELGWSARCTVE 107
             P IV     R GD+      +   A+  LGW  + ++E
Sbjct: 259 KAPLIVYIPLGRRGDLREGKLLDISKARAALGWEPKVSLE 298

Length = 314

>gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs

 Score = 53.9 bits (130), Expect = 9e-10
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 20/120 (16%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGE--------------HLKIKFY 47
           I VF       DG   RD+ ++ D+  G V AL+                       + Y
Sbjct: 206 IDVFN------DGNMSRDFTYIDDIVEGVVRALDTPAKPNPNWDAEAPDPSTSSAPYRVY 259

Query: 48  NLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVE 107
           N+G      ++  +   E+  GK         ++GD+   YA+    QR LG+  + ++E
Sbjct: 260 NIGNNSPVKLMDFIEALEKALGKKAKKNYLPMQKGDVPETYADISKLQRLLGYKPKTSLE 319

This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332

>gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 9/109 (8%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSV--LQ 59
           +T+FG  YG   G  +RD +H  DL   ++           K + +N+G G+  SV  L+
Sbjct: 227 LTIFG--YG---GKQVRDVLHSADLVNLYLRQFQNPD--RRKGEVFNIGGGRENSVSLLE 279

Query: 60  LLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEK 108
           L+   E +TG+ +    +  R GD +   ++    + + GW       +
Sbjct: 280 LIALCEEITGRKMESYKDENRPGDQIWYISDIRKIKEKPGWKPERDPRE 328

CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337

>gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

 Score = 46.0 bits (110), Expect = 5e-07
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 11/102 (10%)

Query: 9   YGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVT 68
           YG  DG  +RD+++V D A      L K  G   +I  YN+G G   + L+L++    + 
Sbjct: 207 YG--DGLNVRDWLYVEDHARAIELVLEK--GRVGEI--YNIGGGNELTNLELVKLILELL 260

Query: 69  GKPVPYI--VEARREGDIVSMYA-NTDLAQRELGWSARCTVE 107
           GK    I  V+ R   D    YA ++   +RELGW  + + E
Sbjct: 261 GKDESLITYVKDRPGHDR--RYAIDSSKIRRELGWRPKVSFE 300

This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315

>gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase

 Score = 42.8 bits (101), Expect = 7e-06
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 15/104 (14%)

Query: 9   YGTEDGTGIRDYIHVMDLAVGHVAALNK--LQGEHLKIKFYNLGTGQGTSVLQLLRTFER 66
           YG  DG  +RD+++V D    H  A+     +G   +   YN+G G   + L+++ T   
Sbjct: 207 YG--DGQQVRDWLYVED----HCRAIYLVLEKGRVGET--YNIGGGNERTNLEVVETILE 258

Query: 67  VTGKPVPYI--VEARREGDIVSMYA-NTDLAQRELGWSARCTVE 107
           + GK    I  VE R   D    YA +    +RELGW+ + T E
Sbjct: 259 LLGKDEDLITHVEDRPGHDR--RYAIDASKIKRELGWAPKYTFE 300

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317

>gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 19/108 (17%)

Query: 9   YGTEDGTGIRDYIHVMDLAVGHVAALNKL--QGEHLKIKFYNLGTGQGTSVLQLLRTFER 66
           YG  DG  IRD+++V D    H  A++ +  +G+  +   YN+G G   + L++++T   
Sbjct: 209 YG--DGLQIRDWLYVED----HCRAIDLVLTKGKIGET--YNIGGGNERTNLEVVKTICE 260

Query: 67  VTGKPVP----YI--VEARREGDIVSMYA-NTDLAQRELGWSARCTVE 107
           + GK  P     I  VE R   D    YA +    +RELGW  + T E
Sbjct: 261 LLGKDKPDYRDLITFVEDRPGHD--RRYAIDASKIKRELGWRPQETFE 306

Length = 340

>gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 12/51 (23%)

Query: 1   MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQ-GEHLKIKFYNLG 50
            I + G      DGT  RD+++V D+A   + AL     GE      YN+G
Sbjct: 194 PILLLG------DGTQRRDFLYVDDVARAILLALEHPDGGEI-----YNIG 233

This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233

>gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 34/117 (29%)

Query: 19  DYIHVMDLAVGHVAALNKLQ-GEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP---- 73
            ++ V D+A GH+AA+ K + GE      Y LG G+  S  QL  T   +TG   P    
Sbjct: 199 SFVDVRDVAEGHIAAMEKGRRGER-----YILG-GENLSFKQLFETLAEITGVKPPRRTI 252

Query: 74  -----YIV----------------EARREGDIVS--MYANTDLAQRELGWSARCTVE 107
                  V                   R   ++      ++D A+RELG+S R   E
Sbjct: 253 PPWLLKAVAALSELKARLTGKPPLLTPRTARVLRRNYLYSSDKARRELGYSPRPLEE 309

This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318

>gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 9/95 (9%)

Query: 18  RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRT-FERVTGKPVPYIV 76
           RD+    D    +   L + + +      Y + TG+  SV + +   FE         + 
Sbjct: 216 RDWGDARDYVEAYWLLLQQGEPDD-----YVIATGETHSVREFVELAFEESGLTGDIEVE 270

Query: 77  ---EARREGDIVSMYANTDLAQRELGWSARCTVEK 108
                 R  ++  +  +   A+ ELGW    + E+
Sbjct: 271 IDPRYFRPTEVDLLLGDPSKAREELGWKPEVSFEE 305

GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316

>gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 34/111 (30%)

Query: 21  IHVMDLAVGHVAALNKLQ-GEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP------ 73
           +HV D+A GH+ AL + + GE      Y LG G+  ++ Q+L     +TG+P P      
Sbjct: 205 VHVDDVAEGHLLALERGRIGER-----YILG-GENLTLKQILDKLAEITGRPAPRVKLPR 258

Query: 74  -------YIVEA-----RREG----DIVS-----MYANTDLAQRELGWSAR 103
                  +  EA      +E     D V      M+ ++  A RELG+  R
Sbjct: 259 WLLLPVAWGAEALARLTGKEPRVTVDGVRMAKKKMFFSSAKAVRELGYRQR 309

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328

>gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 17  IRDYIHVMDLAVGHVAALNKL-QGEHLKIKFYNLG--TGQGTSVLQLLRTFERVTG-KPV 72
           IR + HV++   G++    KL +      + +N G       +VL+L+    R  G    
Sbjct: 224 IRPWQHVLEPLSGYLLLAEKLYERGEEYAEAWNFGPDDEDAVTVLELVEAMARYWGEDAR 283

Query: 73  PYIVEARREGDIVSMYANTDLAQRELGWSARCTVEK 108
             +       +   +  +   A+  LGW  R  +E+
Sbjct: 284 WDLDGNSHPHEANLLKLDCSKAKTMLGWRPRWNLEE 319

This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	99.94
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	99.89
PLN02166	436	dTDP-glucose 4,6-dehydratase	99.85
KOG1429|consensus	350		99.85
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	99.84
PLN02206	442	UDP-glucuronate decarboxylase	99.84
PRK10675	338	UDP-galactose-4-epimerase; Provisional	99.84
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	99.84
PLN02653	340	GDP-mannose 4,6-dehydratase	99.83
PLN02240	352	UDP-glucose 4-epimerase	99.83
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	99.8
KOG0747|consensus	331		99.78
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	99.78
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	99.78
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	99.78
PLN02695	370	GDP-D-mannose-3',5'-epimerase	99.78
PLN02427	386	UDP-apiose/xylose synthase	99.77
PLN00016	378	RNA-binding protein; Provisional	99.75
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	99.75
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	99.75
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	99.75
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	99.74
KOG1371|consensus	343		99.74
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	99.73
PLN02572	442	UDP-sulfoquinovose synthase	99.72
PLN02260	668	probable rhamnose biosynthetic enzyme	99.72
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	99.68
KOG1431|consensus	315		99.64
PLN02214	342	cinnamoyl-CoA reductase	99.61
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	99.57
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	99.56
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	99.56
PLN02686	367	cinnamoyl-CoA reductase	99.55
PRK05865	854	hypothetical protein; Provisional	99.53
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	99.53
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	99.53
PLN02650	351	dihydroflavonol-4-reductase	99.52
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	99.5
COG1089	345	Gmd GDP-D-mannose dehydratase [Cell envelope bioge	99.49
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	99.47
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	99.46
PLN02896	353	cinnamyl-alcohol dehydrogenase	99.44
PLN00198	338	anthocyanidin reductase; Provisional	99.44
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	99.38
CHL00194	317	ycf39 Ycf39; Provisional	99.38
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	99.33
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	99.29
KOG1372|consensus	376		99.21
PF13950	62	Epimerase_Csub: UDP-glucose 4-epimerase C-term sub	99.18
PLN02778	298	3,5-epimerase/4-reductase	99.01
KOG3019|consensus	315		99.01
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	99.01
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	98.95
KOG1502|consensus	327		98.94
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	98.93
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	98.9
PRK07201	657	short chain dehydrogenase; Provisional	98.89
PLN02996	491	fatty acyl-CoA reductase	98.89
PLN02583	297	cinnamoyl-CoA reductase	98.88
PRK12320	699	hypothetical protein; Provisional	98.81
KOG1430|consensus	361		98.77
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	98.75
PLN02260	668	probable rhamnose biosynthetic enzyme	98.46
TIGR01746	367	Thioester-redct thioester reductase domain. It has	98.23
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.85
KOG2865|consensus	391		97.73
PLN02503	605	fatty acyl-CoA reductase 2	97.57
KOG2774|consensus	366		97.49
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	97.4
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	96.68
PRK07074	257	short chain dehydrogenase; Provisional	96.53
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	96.51
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	95.96
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	95.81
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	95.58
PRK05875	276	short chain dehydrogenase; Provisional	94.91
PRK06482	276	short chain dehydrogenase; Provisional	94.79
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.29
PRK07067	257	sorbitol dehydrogenase; Provisional	94.28
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	94.22
PRK06194	287	hypothetical protein; Provisional	93.96
PRK07806	248	short chain dehydrogenase; Provisional	93.74
KOG1221|consensus	467		92.78
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	92.59
PRK08324	681	short chain dehydrogenase; Validated	91.22
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	90.88
PRK07775	274	short chain dehydrogenase; Provisional	90.75
PRK12935	247	acetoacetyl-CoA reductase; Provisional	90.59
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.11
PRK08263	275	short chain dehydrogenase; Provisional	89.64
PRK12829	264	short chain dehydrogenase; Provisional	89.1
PRK09135	249	pteridine reductase; Provisional	88.68
PRK06914	280	short chain dehydrogenase; Provisional	88.46
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	86.32
PRK05876	275	short chain dehydrogenase; Provisional	85.5
PRK12828	239	short chain dehydrogenase; Provisional	85.27
PRK12746	254	short chain dehydrogenase; Provisional	83.99
PRK07060	245	short chain dehydrogenase; Provisional	83.34
PRK07774	250	short chain dehydrogenase; Provisional	83.24
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	81.8
PRK09134	258	short chain dehydrogenase; Provisional	81.43

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=99.94  E-value=4.9e-26  Score=149.55  Aligned_cols=109  Identities=42%  Similarity=0.724  Sum_probs=101.6

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE   81 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~   81 (111)
                      +.|||.++.+.||+..||||||.|+|+|+++|++...+.. ...+||+++|..+|..|+++.+.+..|++.+.+..|.|+
T Consensus       206 l~ifG~DY~T~DGT~iRDYIHV~DLA~aH~~Al~~L~~~g-~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~~~RR~  284 (329)
T COG1087         206 LFIFGDDYDTKDGTCIRDYIHVDDLADAHVLALKYLKEGG-SNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAPRRA  284 (329)
T ss_pred             eEEeCCCCCCCCCCeeeeeeehhHHHHHHHHHHHHHHhCC-ceeEEEccCCCceeHHHHHHHHHHHhCCcCceeeCCCCC
Confidence            6899999999999999999999999999999999875433 447999999999999999999999999999999999999


Q ss_pred             CccchhccCHHHHHHhhCCCccc-chHhhhC
Q psy16546         82 GDIVSMYANTDLAQRELGWSARC-TVEKMCK  111 (111)
Q Consensus        82 ~~~~~~~~d~~k~~~~lg~~p~~-~~~~~l~  111 (111)
                      +++...+.|++|+++.|||+|++ ++++.++
T Consensus       285 GDpa~l~Ad~~kA~~~Lgw~p~~~~L~~ii~  315 (329)
T COG1087         285 GDPAILVADSSKARQILGWQPTYDDLEDIIK  315 (329)
T ss_pred             CCCceeEeCHHHHHHHhCCCcccCCHHHHHH
Confidence            99999999999999999999999 8988763

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.89  E-value=7.6e-23  Score=134.33  Aligned_cols=101  Identities=29%  Similarity=0.417  Sum_probs=94.9

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCcc-----ce
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP-----YI   75 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~-----~~   75 (111)
                      |++|+|      +|.|.|||+||+|-|+|+..++.+.   . .|++|||+++...+-.++++.|.+.++...+     +.
T Consensus       205 ~lpvYG------dG~~iRDWl~VeDh~~ai~~Vl~kg---~-~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~  274 (340)
T COG1088         205 PLPVYG------DGLQIRDWLYVEDHCRAIDLVLTKG---K-IGETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLIT  274 (340)
T ss_pred             CCceec------CCcceeeeEEeHhHHHHHHHHHhcC---c-CCceEEeCCCccchHHHHHHHHHHHhCccccchhhheE
Confidence            689999      9999999999999999999999985   4 7999999999999999999999999998777     78


Q ss_pred             EccCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         76 VEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        76 ~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +...+|+.-.++.+|.+|+.++|||.|.+++++||+
T Consensus       275 ~V~DRpGHD~RYaid~~Ki~~eLgW~P~~~fe~Glr  310 (340)
T COG1088         275 FVEDRPGHDRRYAIDASKIKRELGWRPQETFETGLR  310 (340)
T ss_pred             eccCCCCCccceeechHHHhhhcCCCcCCCHHHHHH
Confidence            899999998999999999999999999999999985

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=99.85  E-value=1.2e-20  Score=132.08  Aligned_cols=100  Identities=21%  Similarity=0.316  Sum_probs=88.2

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR   80 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~   80 (111)
                      ++.++|      +|++.|+|+||+|+|+++..++++.     .+++||+++++.+|+.|+++.+++.++.+..+.+.|.+
T Consensus       318 ~i~v~g------~g~~~rdfi~V~Dva~ai~~~~~~~-----~~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~~  386 (436)
T PLN02166        318 PMTVYG------DGKQTRSFQYVSDLVDGLVALMEGE-----HVGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPNT  386 (436)
T ss_pred             CcEEeC------CCCeEEeeEEHHHHHHHHHHHHhcC-----CCceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCCC
Confidence            356677      9999999999999999999999864     46799999999999999999999999988777777776


Q ss_pred             CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         81 EGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        81 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ..+.....+|++|++++|||+|+++++++|+
T Consensus       387 ~~~~~~~~~d~~Ka~~~LGw~P~~sl~egl~  417 (436)
T PLN02166        387 ADDPHKRKPDISKAKELLNWEPKISLREGLP  417 (436)
T ss_pred             CCCccccccCHHHHHHHcCCCCCCCHHHHHH
Confidence            6666677889999999999999999999874

>KOG1429|consensus

Probab=99.85  E-value=9.8e-21  Score=123.85  Aligned_cols=100  Identities=20%  Similarity=0.286  Sum_probs=93.7

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR   80 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~   80 (111)
                      |++++|      +|.|.|+|+||.|++++++++++++     ..+-+|||+++..|+.|+++++.+..+....+++.+..
T Consensus       225 pltv~g------~G~qtRSF~yvsD~Vegll~Lm~s~-----~~~pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~~~  293 (350)
T KOG1429|consen  225 PLTVYG------DGKQTRSFQYVSDLVEGLLRLMESD-----YRGPVNIGNPGEFTMLELAEMVKELIGPVSEIEFVENG  293 (350)
T ss_pred             CeEEEc------CCcceEEEEeHHHHHHHHHHHhcCC-----CcCCcccCCccceeHHHHHHHHHHHcCCCcceeecCCC
Confidence            789999      9999999999999999999999987     45669999999999999999999999888888888888


Q ss_pred             CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         81 EGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        81 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +.++.....|++|+++.|||.|..+|+++|.
T Consensus       294 ~Ddp~kR~pDit~ake~LgW~Pkv~L~egL~  324 (350)
T KOG1429|consen  294 PDDPRKRKPDITKAKEQLGWEPKVSLREGLP  324 (350)
T ss_pred             CCCccccCccHHHHHHHhCCCCCCcHHHhhH
Confidence            8999999999999999999999999999974

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=99.84  E-value=2.3e-20  Score=127.25  Aligned_cols=104  Identities=20%  Similarity=0.229  Sum_probs=83.8

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCC------ccc
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKP------VPY   74 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~------~~~   74 (111)
                      ++.++|      +|++.|||+||+|+|+++++++....... .+++||+++++.+|++|+++.+.+.++..      ..+
T Consensus       222 ~i~~~g------~g~~~rd~i~v~D~a~a~~~~~~~~~~~~-~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~  294 (348)
T PRK15181        222 PIYING------DGSTSRDFCYIENVIQANLLSATTNDLAS-KNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEP  294 (348)
T ss_pred             CcEEeC------CCCceEeeEEHHHHHHHHHHHHhcccccC-CCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCc
Confidence            356677      99999999999999999998876431123 46899999999999999999999998732      223


Q ss_pred             eEccCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         75 IVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        75 ~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ...+.++.+...+.+|++|+++.+||+|+++++++|+
T Consensus       295 ~~~~~~~~~~~~~~~d~~k~~~~lGw~P~~sl~egl~  331 (348)
T PRK15181        295 IYKDFRDGDVKHSQADITKIKTFLSYEPEFDIKEGLK  331 (348)
T ss_pred             ccCCCCCCcccccccCHHHHHHHhCCCCCCCHHHHHH
Confidence            3344556666677889999999999999999999974

>PLN02206 UDP-glucuronate decarboxylase

Probab=99.84  E-value=2.6e-20  Score=130.52  Aligned_cols=100  Identities=21%  Similarity=0.345  Sum_probs=87.6

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR   80 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~   80 (111)
                      ++.++|      +|++.|+|+||+|+|++++.++++.     .+++||+++++.+|+.|+++.+++.++.+..+.+.|.+
T Consensus       317 ~i~i~g------~G~~~rdfi~V~Dva~ai~~a~e~~-----~~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~~  385 (442)
T PLN02206        317 PLTVYG------DGKQTRSFQFVSDLVEGLMRLMEGE-----HVGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNT  385 (442)
T ss_pred             CcEEeC------CCCEEEeEEeHHHHHHHHHHHHhcC-----CCceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCCC
Confidence            356677      9999999999999999999999864     45799999999999999999999999987777777766


Q ss_pred             CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         81 EGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        81 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ..+.....+|++|+++++||+|+++++++|+
T Consensus       386 ~~~~~~~~~d~sKa~~~LGw~P~~~l~egl~  416 (442)
T PLN02206        386 EDDPHKRKPDITKAKELLGWEPKVSLRQGLP  416 (442)
T ss_pred             CCCccccccCHHHHHHHcCCCCCCCHHHHHH
Confidence            6666667789999999999999999999873

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=99.84  E-value=5.1e-20  Score=124.68  Aligned_cols=109  Identities=50%  Similarity=0.921  Sum_probs=90.3

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE   81 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~   81 (111)
                      +.++|..+..++|++.|+|+|++|+|++++.+++...... .+++||+++++.+|++|+++.+.+.+|.+.++...|.++
T Consensus       215 ~~~~~~~~~~~~g~~~~~~v~v~D~a~~~~~~~~~~~~~~-~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~  293 (338)
T PRK10675        215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVAAMEKLANKP-GVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAPRRE  293 (338)
T ss_pred             eEEeCCcCCCCCCcEEEeeEEHHHHHHHHHHHHHhhhccC-CCceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCCCCC
Confidence            3455544555688999999999999999999998631123 458999999999999999999999999887777777666


Q ss_pred             CccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         82 GDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        82 ~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .+....++|++|+++.+||+|.++++++++
T Consensus       294 ~~~~~~~~~~~k~~~~lg~~p~~~~~~~~~  323 (338)
T PRK10675        294 GDLPAYWADASKADRELNWRVTRTLDEMAQ  323 (338)
T ss_pred             CchhhhhcCHHHHHHHhCCCCcCcHHHHHH
Confidence            666777889999999999999999999874

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=99.84  E-value=2e-20  Score=127.24  Aligned_cols=94  Identities=22%  Similarity=0.302  Sum_probs=80.2

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccc------------------
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPY------------------   74 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~------------------   74 (111)
                      +|++.|||+||+|+|++++.+++++     .+++||+++++++|++|+++.+.+.+|.+..+                  
T Consensus       219 ~g~~~rd~i~V~D~a~a~~~~~~~~-----~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~  293 (343)
T TIGR01472       219 NLDAKRDWGHAKDYVEAMWLMLQQD-----KPDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKVH  293 (343)
T ss_pred             CCccccCceeHHHHHHHHHHHHhcC-----CCccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCcee
Confidence            8999999999999999999999875     35789999999999999999999999965421                  


Q ss_pred             -e--EccCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         75 -I--VEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        75 -~--~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                       .  ..+.++.++..+.+|++|++++|||+|+++++++|+
T Consensus       294 ~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~~~l~egi~  333 (343)
T TIGR01472       294 VEIDPRYFRPTEVDLLLGDATKAKEKLGWKPEVSFEKLVK  333 (343)
T ss_pred             EEeCccccCCCccchhcCCHHHHHHhhCCCCCCCHHHHHH
Confidence             1  122356677778889999999999999999999974

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=99.83  E-value=2.5e-20  Score=126.52  Aligned_cols=94  Identities=18%  Similarity=0.216  Sum_probs=80.3

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCC--ccceEc--cCCCCccchhc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKP--VPYIVE--ARREGDIVSMY   88 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~--~~~~~~--~~~~~~~~~~~   88 (111)
                      +|++.|||+||+|+|+|++.++++.     .+++||+++++++|++|+++.+.+.+|.+  ......  +.++.+...+.
T Consensus       225 ~g~~~rd~i~v~D~a~a~~~~~~~~-----~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~  299 (340)
T PLN02653        225 NLDASRDWGFAGDYVEAMWLMLQQE-----KPDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPRYFRPAEVDNLK  299 (340)
T ss_pred             CCcceecceeHHHHHHHHHHHHhcC-----CCCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeCcccCCcccccccc
Confidence            8999999999999999999999875     45789999999999999999999999864  222222  23566777778


Q ss_pred             cCHHHHHHhhCCCcccchHhhhC
Q psy16546         89 ANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        89 ~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +|++|+++.|||+|.++++++|+
T Consensus       300 ~d~~k~~~~lgw~p~~~l~~gi~  322 (340)
T PLN02653        300 GDASKAREVLGWKPKVGFEQLVK  322 (340)
T ss_pred             CCHHHHHHHhCCCCCCCHHHHHH
Confidence            89999999999999999999984

>PLN02240 UDP-glucose 4-epimerase

Probab=99.83  E-value=8.8e-20  Score=124.12  Aligned_cols=107  Identities=54%  Similarity=0.975  Sum_probs=89.1

Q ss_pred             eeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhh--ccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC
Q psy16546          4 VFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQ--GEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE   81 (111)
Q Consensus         4 ~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~--~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~   81 (111)
                      ++|......+|.+.|+|+|++|+|++++.++++..  +.. .+++||+++++.+|++|+++.+++.++.+.++...+.++
T Consensus       224 ~~g~~~~~~~g~~~~~~i~v~D~a~a~~~a~~~~~~~~~~-~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~  302 (352)
T PLN02240        224 VFGNDYPTKDGTGVRDYIHVMDLADGHIAALRKLFTDPDI-GCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAPRRP  302 (352)
T ss_pred             EeCCCCCCCCCCEEEeeEEHHHHHHHHHHHHhhhhhccCC-CCceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCCCCC
Confidence            44433334588999999999999999999987531  123 468999999999999999999999999888887777777


Q ss_pred             CccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         82 GDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        82 ~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .+...+++|++|++++|||+|.++++++|+
T Consensus       303 ~~~~~~~~d~~k~~~~lg~~p~~~l~~~l~  332 (352)
T PLN02240        303 GDAEEVYASTEKAEKELGWKAKYGIDEMCR  332 (352)
T ss_pred             CChhhhhcCHHHHHHHhCCCCCCCHHHHHH
Confidence            777777789999999999999999999874

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=99.80  E-value=4.1e-19  Score=121.09  Aligned_cols=100  Identities=25%  Similarity=0.357  Sum_probs=81.8

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCcc--------
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP--------   73 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~--------   73 (111)
                      +.++|      +|++.|+|+||+|+|+++..++++.   . .+++||+++++.+|++++++.+.+.++...+        
T Consensus       214 ~~~~g------~g~~~~~~i~v~D~a~a~~~~~~~~---~-~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~  283 (355)
T PRK10217        214 LPVYG------NGQQIRDWLYVEDHARALYCVATTG---K-VGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAH  283 (355)
T ss_pred             ceEeC------CCCeeeCcCcHHHHHHHHHHHHhcC---C-CCCeEEeCCCCcccHHHHHHHHHHHhccccccccccccc
Confidence            45667      9999999999999999999999874   3 4689999999999999999999999875321        


Q ss_pred             ----ceEccCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         74 ----YIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        74 ----~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                          ....+.++.....+.+|++|+++.|||+|.++++++++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~l~e~l~  325 (355)
T PRK10217        284 YRDLITFVADRPGHDLRYAIDASKIARELGWLPQETFESGMR  325 (355)
T ss_pred             ccccceecCCCCCCCcccccCHHHHHHhcCCCCcCcHHHHHH
Confidence                12233344455567889999999999999999999874

>KOG0747|consensus

Probab=99.78  E-value=9.9e-19  Score=114.39  Aligned_cols=100  Identities=22%  Similarity=0.326  Sum_probs=86.2

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCC-------cc
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKP-------VP   73 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~-------~~   73 (111)
                      +.++.|      +|.+.|+|+||+|+++|+..++++.   . .|++|||++..+++..++++.|.+.+...       +.
T Consensus       210 ~~~i~g------~g~~~rs~l~veD~~ea~~~v~~Kg---~-~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~  279 (331)
T KOG0747|consen  210 EYPIHG------DGLQTRSYLYVEDVSEAFKAVLEKG---E-LGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPF  279 (331)
T ss_pred             Ccceec------CcccceeeEeHHHHHHHHHHHHhcC---C-ccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCc
Confidence            467888      9999999999999999999999985   3 69999999999999999999999888642       33


Q ss_pred             ceEccCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         74 YIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        74 ~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +.+.+.++..-.++.++++|++ .|||+|.+++++||+
T Consensus       280 ~~~v~dRp~nd~Ry~~~~eKik-~LGw~~~~p~~eGLr  316 (331)
T KOG0747|consen  280 IFFVEDRPYNDLRYFLDDEKIK-KLGWRPTTPWEEGLR  316 (331)
T ss_pred             ceecCCCCcccccccccHHHHH-hcCCcccCcHHHHHH
Confidence            4456677777677889999999 699999999999984

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=99.78  E-value=2.6e-18  Score=115.13  Aligned_cols=97  Identities=23%  Similarity=0.198  Sum_probs=79.9

Q ss_pred             CCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCC----ccc
Q psy16546         10 GTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREG----DIV   85 (111)
Q Consensus        10 ~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~----~~~   85 (111)
                      ..++|++.|+|+|++|+|++++.++.+.     .+++||+++++++|++|+++.+.+.+|.+..+...+....    ...
T Consensus       206 ~~~~g~~~~~~i~v~D~a~~i~~~~~~~-----~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~  280 (314)
T TIGR02197       206 GFKDGEQLRDFVYVKDVVDVNLWLLENG-----VSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEALRGKYQY  280 (314)
T ss_pred             ccCCCCceeeeEEHHHHHHHHHHHHhcc-----cCceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCcccccccccc
Confidence            3458999999999999999999999873     5689999999999999999999999997755444433221    223


Q ss_pred             hhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         86 SMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        86 ~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ...+|++|+++.+||+|.++++++++
T Consensus       281 ~~~~~~~k~~~~l~~~p~~~l~~~l~  306 (314)
T TIGR02197       281 FTQADITKLRAAGYYGPFTTLEEGVK  306 (314)
T ss_pred             ccccchHHHHHhcCCCCcccHHHHHH
Confidence            45689999999999999999999874

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=99.78  E-value=4.3e-18  Score=114.26  Aligned_cols=108  Identities=48%  Similarity=0.791  Sum_probs=88.2

Q ss_pred             eeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCC
Q psy16546          3 TVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREG   82 (111)
Q Consensus         3 ~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~   82 (111)
                      .++|..+.+.+|++.++|||++|+|+++..++++..... .+++||+++++++|++|+++.+++.+|.+.++...+....
T Consensus       211 ~~~~~~~~~~~g~~~~~~v~~~D~a~~~~~~~~~~~~~~-~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~~~~  289 (328)
T TIGR01179       211 TIFGTDYPTPDGTCVRDYIHVMDLADAHLAALEYLLNGG-ESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPRRPG  289 (328)
T ss_pred             EEeCCcccCCCCceEEeeeeHHHHHHHHHHHHhhhhcCC-CcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCCCCc
Confidence            344544555688999999999999999999998642223 5789999999999999999999999998877766666555


Q ss_pred             ccchhccCHHHHHHhhCCCcccc-hHhhhC
Q psy16546         83 DIVSMYANTDLAQRELGWSARCT-VEKMCK  111 (111)
Q Consensus        83 ~~~~~~~d~~k~~~~lg~~p~~~-~~~~l~  111 (111)
                      +.....+|++|+++.|||+|.++ ++++++
T Consensus       290 ~~~~~~~~~~~~~~~lg~~p~~~~l~~~~~  319 (328)
T TIGR01179       290 DPASLVADASKIRRELGWQPKYTDLEIIIK  319 (328)
T ss_pred             cccchhcchHHHHHHhCCCCCcchHHHHHH
Confidence            55556679999999999999997 998873

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=99.78  E-value=2.2e-18  Score=117.43  Aligned_cols=100  Identities=25%  Similarity=0.359  Sum_probs=81.2

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCcc--------
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP--------   73 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~--------   73 (111)
                      +.++|      +|++.|+|+||+|+|+++..++++.   . .+++||+++++.+|+.++++.+++.++...+        
T Consensus       221 ~~~~~------~g~~~~~~v~v~D~a~a~~~~l~~~---~-~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~~~~~~~  290 (352)
T PRK10084        221 LPIYG------KGDQIRDWLYVEDHARALYKVVTEG---K-AGETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQ  290 (352)
T ss_pred             eEEeC------CCCeEEeeEEHHHHHHHHHHHHhcC---C-CCceEEeCCCCcCcHHHHHHHHHHHhccccccccchhhh
Confidence            45667      9999999999999999999998864   3 5789999999999999999999999985321        


Q ss_pred             ceEccCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         74 YIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        74 ~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ....+.++.+...+.+|++|+++++||+|.++++++|+
T Consensus       291 ~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~l~~~l~  328 (352)
T PRK10084        291 ITYVADRPGHDRRYAIDASKISRELGWKPQETFESGIR  328 (352)
T ss_pred             ccccccCCCCCceeeeCHHHHHHHcCCCCcCCHHHHHH
Confidence            11223344445556789999999999999999999873

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=99.78  E-value=2.7e-18  Score=118.09  Aligned_cols=99  Identities=16%  Similarity=0.271  Sum_probs=83.1

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR   80 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~   80 (111)
                      ++.++|      +|++.|+|+|++|++++++.++++.     .+++||+++++.+|++|+++.+.+.+|.+.++...|..
T Consensus       225 ~i~~~g------~g~~~r~~i~v~D~a~ai~~~~~~~-----~~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~  293 (370)
T PLN02695        225 EFEMWG------DGKQTRSFTFIDECVEGVLRLTKSD-----FREPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPGP  293 (370)
T ss_pred             CeEEeC------CCCeEEeEEeHHHHHHHHHHHHhcc-----CCCceEecCCCceeHHHHHHHHHHHhCCCCCceecCCC
Confidence            356677      9999999999999999999988764     56899999999999999999999999977666665543


Q ss_pred             CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         81 EGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        81 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .. .....+|++|+++.|||+|.++++++|+
T Consensus       294 ~~-~~~~~~d~sk~~~~lgw~p~~~l~e~i~  323 (370)
T PLN02695        294 EG-VRGRNSDNTLIKEKLGWAPTMRLKDGLR  323 (370)
T ss_pred             CC-ccccccCHHHHHHhcCCCCCCCHHHHHH
Confidence            22 2345689999999999999999999874

>PLN02427 UDP-apiose/xylose synthase

Probab=99.77  E-value=3.9e-18  Score=117.67  Aligned_cols=103  Identities=14%  Similarity=0.249  Sum_probs=79.6

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCC-CcccHHHHHHHHHHHhCCCc-c----c
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG-QGTSVLQLLRTFERVTGKPV-P----Y   74 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~-~~~s~~e~~~~i~~~~~~~~-~----~   74 (111)
                      |+.++|      +|++.|+|+||+|+|++++.+++++. .. .+++||++++ +.+|+.|+++.+.+.+|... .    .
T Consensus       246 ~~~~~g------~g~~~r~~i~V~Dva~ai~~al~~~~-~~-~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~  317 (386)
T PLN02427        246 PLKLVD------GGQSQRTFVYIKDAIEAVLLMIENPA-RA-NGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALEE  317 (386)
T ss_pred             CeEEEC------CCCceECcEeHHHHHHHHHHHHhCcc-cc-cCceEEeCCCCCCccHHHHHHHHHHHhccccccccccc
Confidence            345666      89999999999999999999998741 13 4679999987 59999999999999998421 0    1


Q ss_pred             --eEccC------CCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         75 --IVEAR------REGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        75 --~~~~~------~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                        ...+.      ...+...+.+|.+|++++|||+|+++++++|+
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~gl~  362 (386)
T PLN02427        318 PTVDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLE  362 (386)
T ss_pred             cccccCcccccCccccchhhccCCHHHHHHhcCCCcCccHHHHHH
Confidence              11111      11345567789999999999999999999984

>PLN00016 RNA-binding protein; Provisional

Probab=99.75  E-value=8.6e-18  Score=115.80  Aligned_cols=96  Identities=17%  Similarity=0.255  Sum_probs=79.0

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC----------CC
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR----------EG   82 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~----------~~   82 (111)
                      +|++.++|+|++|+|++++.+++++  .. .+++||+++++.+|+.|+++.+.+.+|.+.++...+..          +.
T Consensus       239 ~g~~~~~~i~v~Dva~ai~~~l~~~--~~-~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~p~  315 (378)
T PLN00016        239 SGIQLTQLGHVKDLASMFALVVGNP--KA-AGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAKKAFPF  315 (378)
T ss_pred             CCCeeeceecHHHHHHHHHHHhcCc--cc-cCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCccccccccc
Confidence            8999999999999999999999875  34 57999999999999999999999999987654432211          11


Q ss_pred             ccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         83 DIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        83 ~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ....+.+|++|++++|||+|.++++++|+
T Consensus       316 ~~~~~~~d~~ka~~~LGw~p~~~l~egl~  344 (378)
T PLN00016        316 RDQHFFASPRKAKEELGWTPKFDLVEDLK  344 (378)
T ss_pred             cccccccCHHHHHHhcCCCCCCCHHHHHH
Confidence            22345679999999999999999999873

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=99.75  E-value=1.1e-17  Score=111.81  Aligned_cols=94  Identities=18%  Similarity=0.373  Sum_probs=79.4

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCccchhccCHH
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTD   92 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~   92 (111)
                      +|++.|+|+|++|+|++++.++++.   . ..+.||+++++.+|+.|+++.+++.++.+..+...+.++.......+|++
T Consensus       198 ~g~~~~~~i~v~Dv~~~~~~~~~~~---~-~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~  273 (306)
T PLN02725        198 SGSPLREFLHVDDLADAVVFLMRRY---S-GAEHVNVGSGDEVTIKELAELVKEVVGFEGELVWDTSKPDGTPRKLMDSS  273 (306)
T ss_pred             CCCeeeccccHHHHHHHHHHHHhcc---c-cCcceEeCCCCcccHHHHHHHHHHHhCCCCceeecCCCCCcccccccCHH
Confidence            8999999999999999999999874   2 45789999999999999999999999977666655555544455678999


Q ss_pred             HHHHhhCCCcccchHhhhC
Q psy16546         93 LAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        93 k~~~~lg~~p~~~~~~~l~  111 (111)
                      |+++ +||+|+++++++++
T Consensus       274 k~~~-lg~~p~~~~~~~l~  291 (306)
T PLN02725        274 KLRS-LGWDPKFSLKDGLQ  291 (306)
T ss_pred             HHHH-hCCCCCCCHHHHHH
Confidence            9975 99999999999873

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=99.75  E-value=1.4e-17  Score=111.35  Aligned_cols=100  Identities=27%  Similarity=0.420  Sum_probs=81.0

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccc-eEccCC
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPY-IVEARR   80 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~-~~~~~~   80 (111)
                      +.++|      +|++.|+|+|++|+|+++..++++.   . .+++||+++++.+|++|+++.+.+.++.+... ...+.+
T Consensus       204 ~~~~~------~g~~~~~~i~v~D~a~~~~~~~~~~---~-~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~  273 (317)
T TIGR01181       204 LPVYG------DGQQVRDWLYVEDHCRAIYLVLEKG---R-VGETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDR  273 (317)
T ss_pred             ceEeC------CCceEEeeEEHHHHHHHHHHHHcCC---C-CCceEEeCCCCceeHHHHHHHHHHHhCCCcccccccCCC
Confidence            45566      8999999999999999999999864   3 56899999999999999999999999965332 223333


Q ss_pred             CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         81 EGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        81 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +.....+.+|++|+++.|||+|.++++++++
T Consensus       274 ~~~~~~~~~~~~k~~~~lG~~p~~~~~~~i~  304 (317)
T TIGR01181       274 PGHDRRYAIDASKIKRELGWAPKYTFEEGLR  304 (317)
T ss_pred             ccchhhhcCCHHHHHHHhCCCCCCcHHHHHH
Confidence            4444455789999999999999999998863

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=99.75  E-value=1.2e-17  Score=113.82  Aligned_cols=98  Identities=19%  Similarity=0.328  Sum_probs=75.6

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCC-CcccHHHHHHHHHHHhCCCccc---------eEccC---
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG-QGTSVLQLLRTFERVTGKPVPY---------IVEAR---   79 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~-~~~s~~e~~~~i~~~~~~~~~~---------~~~~~---   79 (111)
                      +|++.|+|+||+|+|++++.+++++.... .+++||++++ ..+|++|+++.|.+.++.....         ...+.   
T Consensus       216 ~g~~~r~~i~v~D~a~a~~~~~~~~~~~~-~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (347)
T PRK11908        216 GGSQKRAFTDIDDGIDALMKIIENKDGVA-SGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAY  294 (347)
T ss_pred             CCceeeccccHHHHHHHHHHHHhCccccC-CCCeEEeCCCCCCcCHHHHHHHHHHHhcCcccccccccccccccCCchhc
Confidence            89999999999999999999998751113 5789999987 5799999999999999854332         11111   


Q ss_pred             ---CCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         80 ---REGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        80 ---~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                         ...+...+..|++|+++.|||+|+++++++++
T Consensus       295 ~~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~~l~  329 (347)
T PRK11908        295 YGKGYQDVQNRVPKIDNTMQELGWAPKTTMDDALR  329 (347)
T ss_pred             cCcCcchhccccCChHHHHHHcCCCCCCcHHHHHH
Confidence               11123345678999999999999999999873

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=99.74  E-value=1.5e-17  Score=121.47  Aligned_cols=98  Identities=13%  Similarity=0.103  Sum_probs=76.1

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC-cccHHHHHHHHHHHhCCCccceEccCC-----------
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ-GTSVLQLLRTFERVTGKPVPYIVEARR-----------   80 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~-~~s~~e~~~~i~~~~~~~~~~~~~~~~-----------   80 (111)
                      +|++.|+|+||+|+|++++.++++..... .+++||+++++ .+|++|+++.+.+.+|.+......|..           
T Consensus       530 ~g~~~rd~i~v~Dva~a~~~~l~~~~~~~-~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  608 (660)
T PRK08125        530 GGKQKRCFTDIRDGIEALFRIIENKDNRC-DGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSSY  608 (660)
T ss_pred             CCceeeceeeHHHHHHHHHHHHhcccccc-CCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCccccccccccccc
Confidence            99999999999999999999998742122 46899999985 799999999999999854211111110           


Q ss_pred             ----CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         81 ----EGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        81 ----~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                          ..+.....+|++|+++.|||+|+++++++|+
T Consensus       609 ~~~~~~~~~~~~~d~~ka~~~LGw~P~~~lee~l~  643 (660)
T PRK08125        609 YGKGYQDVEHRKPSIRNARRLLDWEPKIDMQETID  643 (660)
T ss_pred             cccccccccccCCChHHHHHHhCCCCCCcHHHHHH
Confidence                1233445679999999999999999999974

>KOG1371|consensus

Probab=99.74  E-value=1.1e-17  Score=111.18  Aligned_cols=109  Identities=53%  Similarity=0.862  Sum_probs=100.3

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE   81 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~   81 (111)
                      +.++|.++.+.||+..|+|+|+-|+|+.++.|+++..+.. ..++||++++...++.+++.++++.+|.+.++...+.|+
T Consensus       218 l~v~g~d~~t~dgt~vrdyi~v~Dla~~h~~al~k~~~~~-~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~R~  296 (343)
T KOG1371|consen  218 LQVVGRDYTTIDGTIVRDYIHVLDLADGHVAALGKLRGAA-EFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPRRN  296 (343)
T ss_pred             ceeecCcccccCCCeeecceeeEehHHHHHHHhhccccch-heeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCCCC
Confidence            4678999999999999999999999999999999874323 557999999999999999999999999999999999999


Q ss_pred             CccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         82 GDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        82 ~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ++......++++++++|||+|.++++++++
T Consensus       297 gdv~~~ya~~~~a~~elgwk~~~~iee~c~  326 (343)
T KOG1371|consen  297 GDVAFVYANPSKAQRELGWKAKYGLQEMLK  326 (343)
T ss_pred             CCceeeeeChHHHHHHhCCccccCHHHHHH
Confidence            999999999999999999999999999874

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=99.73  E-value=3.3e-17  Score=111.74  Aligned_cols=101  Identities=16%  Similarity=0.201  Sum_probs=78.6

Q ss_pred             CCCCCCccceeeeHHHHHHHHHHHHhhhhc--cccccceEEecCC--CcccHHHHHHHHHHHhC-CCccceE--ccCCCC
Q psy16546         10 GTEDGTGIRDYIHVMDLAVGHVAALNKLQG--EHLKIKFYNLGTG--QGTSVLQLLRTFERVTG-KPVPYIV--EARREG   82 (111)
Q Consensus        10 ~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~--~~~~~~~yni~~~--~~~s~~e~~~~i~~~~~-~~~~~~~--~~~~~~   82 (111)
                      .+.+|++.|+|+||+|+|+|++.++++...  .. .+++||++++  +++|+.++++.+.+.++ .+..+..  .+.++.
T Consensus       215 ~~~~g~~~rd~i~v~D~a~a~~~~~~~~~~~~~~-~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  293 (349)
T TIGR02622       215 IIRNPDATRPWQHVLEPLSGYLLLAEKLFTGQAE-FAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPH  293 (349)
T ss_pred             EECCCCcccceeeHHHHHHHHHHHHHHHhhcCcc-ccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCc
Confidence            344899999999999999999998875311  12 3689999975  79999999999998775 3333333  223455


Q ss_pred             ccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         83 DIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        83 ~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +.....+|++|++++|||+|+++++++|+
T Consensus       294 ~~~~~~~d~~k~~~~lgw~p~~~l~~gi~  322 (349)
T TIGR02622       294 EARLLKLDSSKARTLLGWHPRWGLEEAVS  322 (349)
T ss_pred             ccceeecCHHHHHHHhCCCCCCCHHHHHH
Confidence            55667789999999999999999999874

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN02572 UDP-sulfoquinovose synthase

Probab=99.72  E-value=4.6e-17  Score=114.30  Aligned_cols=98  Identities=19%  Similarity=0.202  Sum_probs=77.7

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhcccccc--ceEEecCCCcccHHHHHHHHHHH---hCCCccceE
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKI--KFYNLGTGQGTSVLQLLRTFERV---TGKPVPYIV   76 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~--~~yni~~~~~~s~~e~~~~i~~~---~~~~~~~~~   76 (111)
                      +.++|      +|++.|||+||+|+|++++.++++.  .. .+  .+||+++ +.+|+.|+++.+.+.   +|.+..+..
T Consensus       299 i~v~g------~G~~~Rdfi~V~Dva~a~~~al~~~--~~-~g~~~i~Nigs-~~~si~el~~~i~~~~~~~g~~~~~~~  368 (442)
T PLN02572        299 LTVYG------KGGQTRGFLDIRDTVRCIEIAIANP--AK-PGEFRVFNQFT-EQFSVNELAKLVTKAGEKLGLDVEVIS  368 (442)
T ss_pred             ceecC------CCCEEECeEEHHHHHHHHHHHHhCh--hh-cCceeEEEeCC-CceeHHHHHHHHHHHHHhhCCCCCeee
Confidence            45566      9999999999999999999999864  11 23  5899986 689999999999999   887766666


Q ss_pred             ccCC--CCccchhccCHHHHHHhhCCCccc---chHhhh
Q psy16546         77 EARR--EGDIVSMYANTDLAQRELGWSARC---TVEKMC  110 (111)
Q Consensus        77 ~~~~--~~~~~~~~~d~~k~~~~lg~~p~~---~~~~~l  110 (111)
                      .|.+  ..+...+.+|++|+++ |||+|.+   ++++++
T Consensus       369 ~p~~~~~~~~~~~~~d~~k~~~-LGw~p~~~~~~l~~~l  406 (442)
T PLN02572        369 VPNPRVEAEEHYYNAKHTKLCE-LGLEPHLLSDSLLDSL  406 (442)
T ss_pred             CCCCcccccccccCccHHHHHH-cCCCCCCcHHHHHHHH
Confidence            5533  3344466789999986 9999998   677665

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.72  E-value=4.5e-17  Score=119.09  Aligned_cols=100  Identities=22%  Similarity=0.360  Sum_probs=82.5

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCcc--ceEcc
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP--YIVEA   78 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~--~~~~~   78 (111)
                      +++++|      +|++.|+|+||+|+|+++..++++.   . .+++||+++++.+|+.|+++.+++.+|.+..  +...+
T Consensus       212 ~i~i~g------~g~~~r~~ihV~Dva~a~~~~l~~~---~-~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~~~  281 (668)
T PLN02260        212 PLPIHG------DGSNVRSYLYCEDVAEAFEVVLHKG---E-VGHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVE  281 (668)
T ss_pred             CeEEec------CCCceEeeEEHHHHHHHHHHHHhcC---C-CCCEEEECCCCeeEHHHHHHHHHHHhCCCCcceeeecC
Confidence            356677      9999999999999999999998764   3 5789999999999999999999999997643  33334


Q ss_pred             CCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         79 RREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        79 ~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .++.....+.+|++|+++ +||+|.++++++++
T Consensus       282 ~~p~~~~~~~~d~~k~~~-lGw~p~~~~~egl~  313 (668)
T PLN02260        282 NRPFNDQRYFLDDQKLKK-LGWQERTSWEEGLK  313 (668)
T ss_pred             CCCCCcceeecCHHHHHH-cCCCCCCCHHHHHH
Confidence            445555566789999974 99999999999874

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=99.68  E-value=4.2e-16  Score=104.56  Aligned_cols=92  Identities=16%  Similarity=0.063  Sum_probs=71.8

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC----Cccchhc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE----GDIVSMY   88 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~   88 (111)
                      +++..|+|+||+|+|++++.++++.     .+++||+++++.+|+.|+++.+.+.++.. ++...+.+.    .......
T Consensus       204 ~~~~~r~~i~v~D~a~a~~~~~~~~-----~~~~yni~~~~~~s~~el~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~  277 (308)
T PRK11150        204 SENFKRDFVYVGDVAAVNLWFWENG-----VSGIFNCGTGRAESFQAVADAVLAYHKKG-EIEYIPFPDKLKGRYQAFTQ  277 (308)
T ss_pred             CCceeeeeeeHHHHHHHHHHHHhcC-----CCCeEEcCCCCceeHHHHHHHHHHHhCCC-cceeccCccccccccceecc
Confidence            6678999999999999999998874     46799999999999999999999999853 222222211    1122346


Q ss_pred             cCHHHHHHhhCCCcc-cchHhhhC
Q psy16546         89 ANTDLAQRELGWSAR-CTVEKMCK  111 (111)
Q Consensus        89 ~d~~k~~~~lg~~p~-~~~~~~l~  111 (111)
                      .|++|+++ +||+|. .+++++|+
T Consensus       278 ~d~~k~~~-~g~~p~~~~~~~gl~  300 (308)
T PRK11150        278 ADLTKLRA-AGYDKPFKTVAEGVA  300 (308)
T ss_pred             cCHHHHHh-cCCCCCCCCHHHHHH
Confidence            79999997 799987 49999874

>KOG1431|consensus

Probab=99.64  E-value=1.6e-15  Score=97.01  Aligned_cols=99  Identities=16%  Similarity=0.184  Sum_probs=87.1

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC--cccHHHHHHHHHHHhCCCccceEcc
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ--GTSVLQLLRTFERVTGKPVPYIVEA   78 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~--~~s~~e~~~~i~~~~~~~~~~~~~~   78 (111)
                      ++++||      .|+.+|+|+|++|+|++++.++.+-.    .-+-.+++.++  .+|++|+++++.++++...+..+.-
T Consensus       198 ~~~VwG------sG~PlRqFiys~DLA~l~i~vlr~Y~----~vEpiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~Dt  267 (315)
T KOG1431|consen  198 ELTVWG------SGSPLRQFIYSDDLADLFIWVLREYE----GVEPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDT  267 (315)
T ss_pred             eEEEec------CCChHHHHhhHhHHHHHHHHHHHhhc----CccceEeccCccceeEHHHHHHHHHHHhCCCceEEeec
Confidence            478999      99999999999999999999999872    34667888887  8999999999999999999988877


Q ss_pred             CCCCccchhccCHHHHHHhhCCCcccc-hHhhh
Q psy16546         79 RREGDIVSMYANTDLAQRELGWSARCT-VEKMC  110 (111)
Q Consensus        79 ~~~~~~~~~~~d~~k~~~~lg~~p~~~-~~~~l  110 (111)
                      ..+....+...|++|+++ |+|.|.++ ++++|
T Consensus       268 tK~DGq~kKtasnsKL~s-l~pd~~ft~l~~ai  299 (315)
T KOG1431|consen  268 TKSDGQFKKTASNSKLRS-LLPDFKFTPLEQAI  299 (315)
T ss_pred             cCCCCCcccccchHHHHH-hCCCcccChHHHHH
Confidence            666666777889999999 88999886 99987

>PLN02214 cinnamoyl-CoA reductase

Probab=99.61  E-value=3.2e-15  Score=101.93  Aligned_cols=91  Identities=13%  Similarity=0.184  Sum_probs=70.0

Q ss_pred             CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCC-CccceEccCCCCccchhccCHH
Q psy16546         14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGK-PVPYIVEARREGDIVSMYANTD   92 (111)
Q Consensus        14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~d~~   92 (111)
                      |++.|+||||+|+|++++++++++  .  .+++||+++ ...+++|+++.+++.++. +.+....+.++.....+.+|++
T Consensus       219 ~~~~~~~i~V~Dva~a~~~al~~~--~--~~g~yn~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  293 (342)
T PLN02214        219 ANLTQAYVDVRDVALAHVLVYEAP--S--ASGRYLLAE-SARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQ  293 (342)
T ss_pred             CCCCcCeeEHHHHHHHHHHHHhCc--c--cCCcEEEec-CCCCHHHHHHHHHHHCCCCCCCCCCccccCCCCCccccCcH
Confidence            456799999999999999999875  2  457999987 578999999999999863 2222222223344455678999


Q ss_pred             HHHHhhCCCcccchHhhhC
Q psy16546         93 LAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        93 k~~~~lg~~p~~~~~~~l~  111 (111)
                      |+++ |||+| ++++++|+
T Consensus       294 k~~~-LG~~p-~~lee~i~  310 (342)
T PLN02214        294 KIKD-LGLEF-TSTKQSLY  310 (342)
T ss_pred             HHHH-cCCcc-cCHHHHHH
Confidence            9985 99999 59999874

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=99.57  E-value=1.3e-14  Score=98.05  Aligned_cols=90  Identities=18%  Similarity=0.169  Sum_probs=68.0

Q ss_pred             CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccC--CCCccchhccCHH
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEAR--REGDIVSMYANTD   92 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~d~~   92 (111)
                      .+.|+|+||+|+|++++.+++++  .  .+++||++ +..+|++|+++.+.+.++.. .+...+.  +..+...+.+|++
T Consensus       222 ~~~r~~i~v~Dva~a~~~~l~~~--~--~~~~~ni~-~~~~s~~ei~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  295 (325)
T PLN02989        222 TTHHRFVDVRDVALAHVKALETP--S--ANGRYIID-GPVVTIKDIENVLREFFPDL-CIADRNEDITELNSVTFNVCLD  295 (325)
T ss_pred             CcCcCeeEHHHHHHHHHHHhcCc--c--cCceEEEe-cCCCCHHHHHHHHHHHCCCC-CCCCCCCCcccccccCcCCCHH
Confidence            35589999999999999999875  2  35799995 56899999999999999732 1111111  1112235678999


Q ss_pred             HHHHhhCCCcccchHhhhC
Q psy16546         93 LAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        93 k~~~~lg~~p~~~~~~~l~  111 (111)
                      |+++ |||+|.++++++|+
T Consensus       296 k~~~-lg~~p~~~l~~gi~  313 (325)
T PLN02989        296 KVKS-LGIIEFTPTETSLR  313 (325)
T ss_pred             HHHH-cCCCCCCCHHHHHH
Confidence            9987 99999999999984

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=99.56  E-value=2.6e-14  Score=94.91  Aligned_cols=93  Identities=15%  Similarity=0.040  Sum_probs=72.3

Q ss_pred             CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccc------eEc-----cCCCCc
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPY------IVE-----ARREGD   83 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~------~~~-----~~~~~~   83 (111)
                      ++.++|+|++|+|+++..+++++  .. .+++||+++++.+|+.|+++.+.+.+|.+...      ...     +.....
T Consensus       178 ~~~~~~v~v~Dva~a~~~~~~~~--~~-~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (287)
T TIGR01214       178 DQIGSPTYAKDLARVIAALLQRL--AR-ARGVYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVKPISSKEYPRPARR  254 (287)
T ss_pred             CCCcCCcCHHHHHHHHHHHHhhc--cC-CCCeEEEECCCCcCHHHHHHHHHHHhCcccccccCceeEeecHHHcCCCCCC
Confidence            46789999999999999999874  33 68999999999999999999999999876431      111     111222


Q ss_pred             cchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         84 IVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        84 ~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .....+|++|+++.+||. .++++++|+
T Consensus       255 ~~~~~~d~~~~~~~lg~~-~~~~~~~l~  281 (287)
T TIGR01214       255 PAYSVLDNTKLVKTLGTP-LPHWREALR  281 (287)
T ss_pred             CCccccchHHHHHHcCCC-CccHHHHHH
Confidence            234678999999999994 569998873

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.56  E-value=6e-14  Score=93.85  Aligned_cols=93  Identities=25%  Similarity=0.411  Sum_probs=78.0

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC-cccHHHHHHHHHHHhCCCcc-ceEcc--CCCCccchhc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ-GTSVLQLLRTFERVTGKPVP-YIVEA--RREGDIVSMY   88 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~-~~s~~e~~~~i~~~~~~~~~-~~~~~--~~~~~~~~~~   88 (111)
                      +|++.|+|+|++|+|++++.+++++  .  .+ +||+++++ ..+..++++.+++.++.... ....+  ..........
T Consensus       205 ~~~~~~~~i~v~D~a~~~~~~~~~~--~--~~-~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (314)
T COG0451         205 DGSQTRDFVYVDDVADALLLALENP--D--GG-VFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKL  279 (314)
T ss_pred             CCceeEeeEeHHHHHHHHHHHHhCC--C--Cc-EEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCCCCCCccccccc
Confidence            8899999999999999999999986  2  23 99999997 89999999999999998766 44444  2333444567


Q ss_pred             cCHHHHHHhhCCCcccchHhhh
Q psy16546         89 ANTDLAQRELGWSARCTVEKMC  110 (111)
Q Consensus        89 ~d~~k~~~~lg~~p~~~~~~~l  110 (111)
                      +|++|+++.+||+|.+++++++
T Consensus       280 ~~~~~~~~~lg~~p~~~~~~~i  301 (314)
T COG0451         280 LDISKARAALGWEPKVSLEEGL  301 (314)
T ss_pred             CCHHHHHHHhCCCCCCCHHHHH
Confidence            7999999999999999999886

>PLN02686 cinnamoyl-CoA reductase

Probab=99.55  E-value=1.1e-14  Score=100.12  Aligned_cols=90  Identities=16%  Similarity=0.194  Sum_probs=75.0

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC-CCccchhccCHHHHH
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR-EGDIVSMYANTDLAQ   95 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~d~~k~~   95 (111)
                      .++|+||+|+|+|++++++...+.. .+++| +++++.+|++|+++.+.+.+|.+......+.+ +.+...+.+|++|++
T Consensus       274 ~~~~v~V~Dva~A~~~al~~~~~~~-~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~d~~~~~~d~~kl~  351 (367)
T PLN02686        274 LLATADVERLAEAHVCVYEAMGNKT-AFGRY-ICFDHVVSREDEAEELARQIGLPINKIAGNSSSDDTPARFELSNKKLS  351 (367)
T ss_pred             CcCeEEHHHHHHHHHHHHhccCCCC-CCCcE-EEeCCCccHHHHHHHHHHHcCCCCCcCCCchhhcCCcccccccHHHHH
Confidence            4679999999999999998521123 56788 88899999999999999999988777666666 788888999999999


Q ss_pred             HhhCCCcccchHh
Q psy16546         96 RELGWSARCTVEK  108 (111)
Q Consensus        96 ~~lg~~p~~~~~~  108 (111)
                      ++|||+|+...++
T Consensus       352 ~~l~~~~~~~~~~  364 (367)
T PLN02686        352 RLMSRTRRCCYDE  364 (367)
T ss_pred             HHHHHhhhccccc
Confidence            9999999876554

>PRK05865 hypothetical protein; Provisional

Probab=99.53  E-value=3.8e-14  Score=105.49  Aligned_cols=96  Identities=16%  Similarity=0.088  Sum_probs=69.9

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhC---CCccceEccCCCCcc--chh
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTG---KPVPYIVEARREGDI--VSM   87 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~---~~~~~~~~~~~~~~~--~~~   87 (111)
                      ++++.++|+|++|+|++++.++++.  .. .+++||+++++.+|++|+++.+.+...   .+......+....+.  ...
T Consensus       150 ~~~~~~dfIhVdDVA~Ai~~aL~~~--~~-~ggvyNIgsg~~~Si~EIae~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~  226 (854)
T PRK05865        150 YADRVVQVVHSDDAQRLLVRALLDT--VI-DSGPVNLAAPGELTFRRIAAALGRPMVPIGSPVLRRVTSFAELELLHSAP  226 (854)
T ss_pred             CCCceEeeeeHHHHHHHHHHHHhCC--Cc-CCCeEEEECCCcccHHHHHHHHhhhhccCCchhhhhccchhhhhcccCCc
Confidence            4566779999999999999998754  33 578999999999999999999887542   111111111111111  134


Q ss_pred             ccCHHHHHHhhCCCcccchHhhhC
Q psy16546         88 YANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        88 ~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .+|++|+++.|||+|+++++++|+
T Consensus       227 ~~D~sKar~~LGw~P~~sLeeGL~  250 (854)
T PRK05865        227 LMDVTLLRDRWGFQPAWNAEECLE  250 (854)
T ss_pred             cCCHHHHHHHhCCCCCCCHHHHHH
Confidence            679999999999999999999874

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=99.53  E-value=3.4e-14  Score=95.32  Aligned_cols=100  Identities=16%  Similarity=0.038  Sum_probs=75.6

Q ss_pred             CeeeeCCCCCCCC--CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHh---CCCc---
Q psy16546          1 MITVFGADYGTED--GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVT---GKPV---   72 (111)
Q Consensus         1 ~~~~~g~~~~~~~--g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~---~~~~---   72 (111)
                      +++++|      +  |++.+.+.+++|++.++..+++..   . .+++||+++++.+|+.|+++.|.+.+   |.+.   
T Consensus       175 ~~~v~~------d~~g~~~~~~~~~d~~~~~~~~~~~~~---~-~~giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~  244 (299)
T PRK09987        175 ELSVIN------DQFGAPTGAELLADCTAHAIRVALNKP---E-VAGLYHLVASGTTTWHDYAALVFEEARKAGITLALN  244 (299)
T ss_pred             CeEEeC------CCcCCCCCHHHHHHHHHHHHHHhhccC---C-CCCeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcC
Confidence            356677      7  788888878888999998887653   2 35799999999999999999998764   3332   


Q ss_pred             cceEc-----cCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         73 PYIVE-----ARREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        73 ~~~~~-----~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .+...     +.+..++....+|++|+++.|||+|. +|+++|+
T Consensus       245 ~i~~~~~~~~~~~~~rp~~~~ld~~k~~~~lg~~~~-~~~~~l~  287 (299)
T PRK09987        245 KLNAVPTSAYPTPARRPHNSRLNTEKFQQNFALVLP-DWQVGVK  287 (299)
T ss_pred             eeeecchhhcCCCCCCCCcccCCHHHHHHHhCCCCc-cHHHHHH
Confidence            12222     23345666778999999999999985 9999874

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=99.53  E-value=2.1e-14  Score=95.23  Aligned_cols=93  Identities=12%  Similarity=0.091  Sum_probs=72.8

Q ss_pred             CCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC---------CC
Q psy16546         12 EDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR---------EG   82 (111)
Q Consensus        12 ~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~---------~~   82 (111)
                      .+|++.|+|+|++|+|+++..+++++   . ..++||+++++.+|++|+++.+.+.+|.+... ..|..         +.
T Consensus       189 g~~~~~~~~i~v~Dva~~i~~~l~~~---~-~~g~~~~~~~~~~s~~di~~~i~~~~g~~~~~-~~p~~~~~~~~~~~~~  263 (292)
T TIGR01777       189 GSGRQWFSWIHIEDLVQLILFALENA---S-ISGPVNATAPEPVRNKEFAKALARALHRPAFF-PVPAFVLRALLGEMAD  263 (292)
T ss_pred             CCCCcccccEeHHHHHHHHHHHhcCc---c-cCCceEecCCCccCHHHHHHHHHHHhCCCCcC-cCCHHHHHHHhchhhH
Confidence            48899999999999999999999874   2 46799999999999999999999999976432 23321         11


Q ss_pred             c-cchhccCHHHHHHhhCCCccc-chHhhh
Q psy16546         83 D-IVSMYANTDLAQRELGWSARC-TVEKMC  110 (111)
Q Consensus        83 ~-~~~~~~d~~k~~~~lg~~p~~-~~~~~l  110 (111)
                      . .....++++|+++ +||+|.+ +++|++
T Consensus       264 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~  292 (292)
T TIGR01777       264 LLLKGQRVLPEKLLE-AGFQFQYPDLDEAL  292 (292)
T ss_pred             HHhCCcccccHHHHh-cCCeeeCcChhhcC
Confidence            1 1123467899986 9999999 598875

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PLN02650 dihydroflavonol-4-reductase

Probab=99.52  E-value=6.6e-14  Score=95.59  Aligned_cols=89  Identities=15%  Similarity=0.257  Sum_probs=67.0

Q ss_pred             ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCC-ccceEccCCCCccchhccCHHHH
Q psy16546         16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKP-VPYIVEARREGDIVSMYANTDLA   94 (111)
Q Consensus        16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~d~~k~   94 (111)
                      +.|+|+||+|+|++++.+++++  .  .+++| +++++.+|+.|+++++.+.++.. .+.. .+..+.+.....+|++|+
T Consensus       224 ~~r~~v~V~Dva~a~~~~l~~~--~--~~~~~-i~~~~~~s~~el~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~d~~k~  297 (351)
T PLN02650        224 KQGQFVHLDDLCNAHIFLFEHP--A--AEGRY-ICSSHDATIHDLAKMLREKYPEYNIPAR-FPGIDEDLKSVEFSSKKL  297 (351)
T ss_pred             CCcceeeHHHHHHHHHHHhcCc--C--cCceE-EecCCCcCHHHHHHHHHHhCcccCCCCC-CCCcCcccccccCChHHH
Confidence            3589999999999999999875  2  34678 56678899999999999988632 1111 122234445566799998


Q ss_pred             HHhhCCCcccchHhhhC
Q psy16546         95 QRELGWSARCTVEKMCK  111 (111)
Q Consensus        95 ~~~lg~~p~~~~~~~l~  111 (111)
                      + .|||+|+++++++|+
T Consensus       298 ~-~lG~~p~~~l~egl~  313 (351)
T PLN02650        298 T-DLGFTFKYSLEDMFD  313 (351)
T ss_pred             H-HhCCCCCCCHHHHHH
Confidence            5 599999999999974

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=99.50  E-value=1.1e-13  Score=93.29  Aligned_cols=91  Identities=14%  Similarity=0.086  Sum_probs=67.9

Q ss_pred             CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCccchhccCHHH
Q psy16546         14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDL   93 (111)
Q Consensus        14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k   93 (111)
                      +++.|+|+||+|+|++++.+++++  .  .++.||++ +..+|++|+++++.+.++........+....+...+.+|++|
T Consensus       219 ~~~~~~~i~v~Dva~a~~~~~~~~--~--~~~~~~~~-g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k  293 (322)
T PLN02662        219 PNASYRWVDVRDVANAHIQAFEIP--S--ASGRYCLV-ERVVHYSEVVKILHELYPTLQLPEKCADDKPYVPTYQVSKEK  293 (322)
T ss_pred             CCCCcCeEEHHHHHHHHHHHhcCc--C--cCCcEEEe-CCCCCHHHHHHHHHHHCCCCCCCCCCCCccccccccccChHH
Confidence            356799999999999999999875  2  34689997 678999999999999886321111111112244556789999


Q ss_pred             HHHhhCCCcccchHhhhC
Q psy16546         94 AQRELGWSARCTVEKMCK  111 (111)
Q Consensus        94 ~~~~lg~~p~~~~~~~l~  111 (111)
                      +++ |||++ ++++++|+
T Consensus       294 ~~~-lg~~~-~~~~~~l~  309 (322)
T PLN02662        294 AKS-LGIEF-IPLEVSLK  309 (322)
T ss_pred             HHH-hCCcc-ccHHHHHH
Confidence            996 99997 59999874

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.49  E-value=1.1e-13  Score=91.08  Aligned_cols=97  Identities=18%  Similarity=0.282  Sum_probs=84.0

Q ss_pred             CCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccce-------------
Q psy16546          9 YGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI-------------   75 (111)
Q Consensus         9 ~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~-------------   75 (111)
                      +.+.|-+..|||=|..|.++++++.++++     .++.|.+++++..|++||+++..+..|.+..+.             
T Consensus       214 l~lGNldAkRDWG~A~DYVe~mwlmLQq~-----~PddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~~  288 (345)
T COG1089         214 LYLGNLDAKRDWGHAKDYVEAMWLMLQQE-----EPDDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKT  288 (345)
T ss_pred             EEeccccccccccchHHHHHHHHHHHccC-----CCCceEEecCceeeHHHHHHHHHHHcCceEEEeecccccccccccc
Confidence            34448999999999999999999999987     678999999999999999999999999665532             


Q ss_pred             ------Ecc--CCCCccchhccCHHHHHHhhCCCcccchHhhh
Q psy16546         76 ------VEA--RREGDIVSMYANTDLAQRELGWSARCTVEKMC  110 (111)
Q Consensus        76 ------~~~--~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l  110 (111)
                            +.|  .+|.++.....|.+|+++.|||+|.+++++.+
T Consensus       289 G~~~V~idp~~fRPaEV~~Llgdp~KA~~~LGW~~~~~~~elv  331 (345)
T COG1089         289 GKIIVEIDPRYFRPAEVDLLLGDPTKAKEKLGWRPEVSLEELV  331 (345)
T ss_pred             CceeEEECccccCchhhhhhcCCHHHHHHHcCCccccCHHHHH
Confidence                  223  36788888899999999999999999999875

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=99.47  E-value=2.5e-13  Score=91.69  Aligned_cols=89  Identities=15%  Similarity=0.204  Sum_probs=66.1

Q ss_pred             CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCccch--hccCH
Q psy16546         14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVS--MYANT   91 (111)
Q Consensus        14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~d~   91 (111)
                      |++.|+|+||+|+|++++.+++++  .  .+++||++ ++.+|+.++++++.+.++. ..+... .+..+...  ..+|+
T Consensus       220 ~~~~~~~v~v~Dva~a~~~al~~~--~--~~~~yni~-~~~~s~~e~~~~i~~~~~~-~~~~~~-~~~~~~~~~~~~~d~  292 (322)
T PLN02986        220 NNRFYRFVDVRDVALAHIKALETP--S--ANGRYIID-GPIMSVNDIIDILRELFPD-LCIADT-NEESEMNEMICKVCV  292 (322)
T ss_pred             CCcCcceeEHHHHHHHHHHHhcCc--c--cCCcEEEe-cCCCCHHHHHHHHHHHCCC-CCCCCC-CccccccccCCccCH
Confidence            356789999999999999999975  2  35689995 6689999999999999873 121111 11222222  24799


Q ss_pred             HHHHHhhCCCcccchHhhhC
Q psy16546         92 DLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        92 ~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +|++. |||+|. +++++|+
T Consensus       293 ~~~~~-lg~~~~-~l~e~~~  310 (322)
T PLN02986        293 EKVKN-LGVEFT-PMKSSLR  310 (322)
T ss_pred             HHHHH-cCCccc-CHHHHHH
Confidence            99976 999986 8999873

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=99.46  E-value=2.9e-13  Score=91.80  Aligned_cols=93  Identities=11%  Similarity=0.063  Sum_probs=74.9

Q ss_pred             CCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCcc-chh
Q psy16546          9 YGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDI-VSM   87 (111)
Q Consensus         9 ~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~-~~~   87 (111)
                      +.+.+|++.|+|+||+|+|++++.++++.   . .+++| ++++..+++.++++.+.+.+    .+...+.++++. ...
T Consensus       190 ~~i~~~~~~r~~i~v~D~a~a~~~al~~~---~-~~~~~-~~~~~~~sv~el~~~i~~~~----~~~~~~~~~g~~~~~~  260 (324)
T TIGR03589       190 LPITDPRMTRFWITLEQGVNFVLKSLERM---L-GGEIF-VPKIPSMKITDLAEAMAPEC----PHKIVGIRPGEKLHEV  260 (324)
T ss_pred             eeeCCCCceEeeEEHHHHHHHHHHHHhhC---C-CCCEE-ccCCCcEEHHHHHHHHHhhC----CeeEeCCCCCchhHhh
Confidence            34447899999999999999999999874   2 45778 57677899999999999864    344556666664 346


Q ss_pred             ccCHHHHHHhhCCCcccchHhhh
Q psy16546         88 YANTDLAQRELGWSARCTVEKMC  110 (111)
Q Consensus        88 ~~d~~k~~~~lg~~p~~~~~~~l  110 (111)
                      .+|.+|+++.+||.|.+++++++
T Consensus       261 ~~~~~~~~~~lg~~~~~~l~~~~  283 (324)
T TIGR03589       261 MITEDDARHTYELGDYYAILPSI  283 (324)
T ss_pred             hcChhhhhhhcCCCCeEEEcccc
Confidence            67999999999999999999886

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=99.44  E-value=5e-13  Score=91.39  Aligned_cols=88  Identities=11%  Similarity=0.210  Sum_probs=65.7

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCC-ccceEccCCCCccchhccCHHHHH
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKP-VPYIVEARREGDIVSMYANTDLAQ   95 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~d~~k~~   95 (111)
                      .|+|+||+|+|++++.+++.+  .  .+++|++ ++..+|+.|+++.+.+.++.. ......+....+.. ..+|++|++
T Consensus       245 ~~dfi~v~Dva~a~~~~l~~~--~--~~~~~~~-~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  318 (353)
T PLN02896        245 SIALVHIEDICDAHIFLMEQT--K--AEGRYIC-CVDSYDMSELINHLSKEYPCSNIQVRLDEEKRGSIP-SEISSKKLR  318 (353)
T ss_pred             ceeEEeHHHHHHHHHHHHhCC--C--cCccEEe-cCCCCCHHHHHHHHHHhCCCCCccccccccccCccc-cccCHHHHH
Confidence            469999999999999999864  2  3467865 578899999999999998732 22233333333332 356889997


Q ss_pred             HhhCCCcccchHhhhC
Q psy16546         96 RELGWSARCTVEKMCK  111 (111)
Q Consensus        96 ~~lg~~p~~~~~~~l~  111 (111)
                      . +||+|.++++++|+
T Consensus       319 ~-lGw~p~~~l~~~i~  333 (353)
T PLN02896        319 D-LGFEYKYGIEEIID  333 (353)
T ss_pred             H-cCCCccCCHHHHHH
Confidence            5 99999999999874

>PLN00198 anthocyanidin reductase; Provisional

Probab=99.44  E-value=4.8e-13  Score=90.93  Aligned_cols=87  Identities=17%  Similarity=0.139  Sum_probs=65.6

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCC-CccceEccCCCCccchhccCHHHHH
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGK-PVPYIVEARREGDIVSMYANTDLAQ   95 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~d~~k~~   95 (111)
                      .|||+||+|+|++++.++++.  .  .++.|+ +++..+|+.++++.+.+.++. +.+....+. + ......+|++|++
T Consensus       237 ~~~~i~V~D~a~a~~~~~~~~--~--~~~~~~-~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~-~-~~~~~~~~~~k~~  309 (338)
T PLN00198        237 SISITHVEDVCRAHIFLAEKE--S--ASGRYI-CCAANTSVPELAKFLIKRYPQYQVPTDFGDF-P-SKAKLIISSEKLI  309 (338)
T ss_pred             CcceeEHHHHHHHHHHHhhCc--C--cCCcEE-EecCCCCHHHHHHHHHHHCCCCCCCcccccc-C-CCCccccChHHHH
Confidence            489999999999999999875  2  346784 557789999999999998863 233222221 1 2234568999999


Q ss_pred             HhhCCCcccchHhhhC
Q psy16546         96 RELGWSARCTVEKMCK  111 (111)
Q Consensus        96 ~~lg~~p~~~~~~~l~  111 (111)
                      + +||+|+++++++|+
T Consensus       310 ~-~G~~p~~~l~~gi~  324 (338)
T PLN00198        310 S-EGFSFEYGIEEIYD  324 (338)
T ss_pred             h-CCceecCcHHHHHH
Confidence            8 69999999999974

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=99.38  E-value=7.7e-13  Score=86.80  Aligned_cols=94  Identities=14%  Similarity=0.188  Sum_probs=72.3

Q ss_pred             CCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccC-----CCCccc
Q psy16546         11 TEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEAR-----REGDIV   85 (111)
Q Consensus        11 ~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~-----~~~~~~   85 (111)
                      +.+|.|+.+|||++|+++++..++++.   . ..+.||++++.+++.++|..++++.++++.. ...|.     -.++..
T Consensus       186 ~GsGrQ~~SWIhieD~v~~I~fll~~~---~-lsGp~N~taP~PV~~~~F~~al~r~l~RP~~-~~vP~~~~rl~LGe~a  260 (297)
T COG1090         186 LGSGRQWFSWIHIEDLVNAILFLLENE---Q-LSGPFNLTAPNPVRNKEFAHALGRALHRPAI-LPVPSFALRLLLGEMA  260 (297)
T ss_pred             cCCCCceeeeeeHHHHHHHHHHHHhCc---C-CCCcccccCCCcCcHHHHHHHHHHHhCCCcc-ccCcHHHHHHHhhhhH
Confidence            349999999999999999999999995   2 6899999999999999999999999997632 22332     123333


Q ss_pred             hhccC-----HHHHHHhhCCCccc-chHhhh
Q psy16546         86 SMYAN-----TDLAQRELGWSARC-TVEKMC  110 (111)
Q Consensus        86 ~~~~d-----~~k~~~~lg~~p~~-~~~~~l  110 (111)
                      ...++     ++|+.+ .||+.+| +++++|
T Consensus       261 ~~lL~gQrvlP~kl~~-aGF~F~y~dl~~AL  290 (297)
T COG1090         261 DLLLGGQRVLPKKLEA-AGFQFQYPDLEEAL  290 (297)
T ss_pred             HHHhccchhhHHHHHH-CCCeeecCCHHHHH
Confidence            33333     556655 7888877 788876

>CHL00194 ycf39 Ycf39; Provisional

Probab=99.38  E-value=1.9e-12  Score=87.50  Aligned_cols=95  Identities=14%  Similarity=0.061  Sum_probs=74.1

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCC----------
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREG----------   82 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~----------   82 (111)
                      ++++.++|+|++|+|+++..+++++  .. .+++||+++++.+|+.|+++.+.+.+|.+..+...|....          
T Consensus       169 ~~~~~~~~i~v~Dva~~~~~~l~~~--~~-~~~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~  245 (317)
T CHL00194        169 NESTPISYIDTQDAAKFCLKSLSLP--ET-KNKTFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFF  245 (317)
T ss_pred             CCCCccCccCHHHHHHHHHHHhcCc--cc-cCcEEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhc
Confidence            5678899999999999999999875  44 6899999999999999999999999998766655543100          


Q ss_pred             -------cc---------c-hhccCHHHHHHhhCCCcc--cchHhhh
Q psy16546         83 -------DI---------V-SMYANTDLAQRELGWSAR--CTVEKMC  110 (111)
Q Consensus        83 -------~~---------~-~~~~d~~k~~~~lg~~p~--~~~~~~l  110 (111)
                             ..         . ...++.+++++.||+.|.  .++++++
T Consensus       246 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~  292 (317)
T CHL00194        246 EWTWNISDRLAFVEILNTSNNFSSSMAELYKIFKIDPNELISLEDYF  292 (317)
T ss_pred             ccchhhHHHHHHHHHHhcCCCcCCCHHHHHHHhCCChhhhhhHHHHH
Confidence                   00         0 023467889999999984  5788876

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=99.33  E-value=3.6e-12  Score=85.84  Aligned_cols=90  Identities=29%  Similarity=0.454  Sum_probs=68.8

Q ss_pred             ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC---------------
Q psy16546         16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR---------------   80 (111)
Q Consensus        16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~---------------   80 (111)
                      ..++|+|++|+|++++.++++.   . .+..|+++ ++.+|+.|+++.+.+.+|.+.+....|..               
T Consensus       200 ~~~~~i~v~D~a~a~~~~~~~~---~-~~~~~~~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (328)
T TIGR03466       200 TGLNLVHVDDVAEGHLLALERG---R-IGERYILG-GENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARL  274 (328)
T ss_pred             CCcceEEHHHHHHHHHHHHhCC---C-CCceEEec-CCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence            3468999999999999999874   3 46788886 68899999999999999976544333311               


Q ss_pred             -CCcc-----------chhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         81 -EGDI-----------VSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        81 -~~~~-----------~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                       ....           ....+|++|+++.|||+|. +++++++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~-~~~~~i~  316 (328)
T TIGR03466       275 TGKEPRVTVDGVRMAKKKMFFSSAKAVRELGYRQR-PAREALR  316 (328)
T ss_pred             cCCCCCCCHHHHHHHhccCCCChHHHHHHcCCCCc-CHHHHHH
Confidence             0000           1345799999999999995 9999873

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=99.29  E-value=1.1e-11  Score=82.87  Aligned_cols=95  Identities=13%  Similarity=0.013  Sum_probs=63.0

Q ss_pred             CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCc-cceEccC-----CCCccchhc
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV-PYIVEAR-----REGDIVSMY   88 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~-~~~~~~~-----~~~~~~~~~   88 (111)
                      ++.++.+|+.|+|+++..++++........|+||+++++.+|+.|+++.+++.++.+. .+...+.     ....+....
T Consensus       178 d~~~~p~~~~dlA~~i~~l~~~~~~~~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~~~~~~~rp~~~~  257 (286)
T PF04321_consen  178 DQYRSPTYVDDLARVILELIEKNLSGASPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSEFPRAAPRPRNTS  257 (286)
T ss_dssp             SCEE--EEHHHHHHHHHHHHHHHHH-GGG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTTSTTSSGS-SBE-
T ss_pred             CceeCCEEHHHHHHHHHHHHHhcccccccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEecccccCCCCCCCCCccc
Confidence            7789999999999999999998721111349999999999999999999999999776 3333321     222344578


Q ss_pred             cCHHHHHHhhCCCcccchHhhh
Q psy16546         89 ANTDLAQRELGWSARCTVEKMC  110 (111)
Q Consensus        89 ~d~~k~~~~lg~~p~~~~~~~l  110 (111)
                      +|++|+++.||.++. +++++|
T Consensus       258 L~~~kl~~~~g~~~~-~~~~~l  278 (286)
T PF04321_consen  258 LDCRKLKNLLGIKPP-PWREGL  278 (286)
T ss_dssp             B--HHHHHCTTS----BHHHHH
T ss_pred             ccHHHHHHccCCCCc-CHHHHH
Confidence            899999999999875 888876

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>KOG1372|consensus

Probab=99.21  E-value=4.8e-11  Score=77.79  Aligned_cols=97  Identities=18%  Similarity=0.274  Sum_probs=80.2

Q ss_pred             CCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccc--------------
Q psy16546          9 YGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPY--------------   74 (111)
Q Consensus         9 ~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~--------------   74 (111)
                      +.+.+-+..|||-|..|.++|+++.++++     ..+-|-|++++..|++||++..-..+|....+              
T Consensus       243 ~~LGNL~a~RDWGhA~dYVEAMW~mLQ~d-----~PdDfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~~~n~~g  317 (376)
T KOG1372|consen  243 IELGNLSALRDWGHAGDYVEAMWLMLQQD-----SPDDFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEVGKNDDG  317 (376)
T ss_pred             EEecchhhhcccchhHHHHHHHHHHHhcC-----CCCceEEecCCcccHHHHHHHHHHhhCcEEeecccccccccccCCc
Confidence            34448889999999999999999999997     57889999999999999999987777743222              


Q ss_pred             ----eEcc--CCCCccchhccCHHHHHHhhCCCcccchHhhh
Q psy16546         75 ----IVEA--RREGDIVSMYANTDLAQRELGWSARCTVEKMC  110 (111)
Q Consensus        75 ----~~~~--~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l  110 (111)
                          ...|  .+|.++.....|.+|+++.|||+|+.++.+-+
T Consensus       318 ~v~V~v~~kYyRPtEVd~LqGdasKAk~~LgW~pkv~f~eLV  359 (376)
T KOG1372|consen  318 VVRVKVDPKYYRPTEVDTLQGDASKAKKTLGWKPKVTFPELV  359 (376)
T ss_pred             eEEEEecccccCcchhhhhcCChHHHHHhhCCCCccCHHHHH
Confidence                1222  36788888889999999999999999987754

>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A

Probab=99.18  E-value=1.7e-11  Score=64.20  Aligned_cols=49  Identities=39%  Similarity=0.716  Sum_probs=31.1

Q ss_pred             HHHHHhCCCccceEccCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         63 TFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        63 ~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ++.++.|+++++.+.|.+++++...+.|++|++++|||+|+++|+++++
T Consensus         1 A~e~vtG~~i~~~~~~rR~GD~~~~~Ad~~kA~~~LgW~p~~~L~~~i~   49 (62)
T PF13950_consen    1 AFEKVTGKKIPVEYAPRRPGDPAHLVADISKAREELGWKPKYSLEDMIR   49 (62)
T ss_dssp             HHHHHHTS---EEEE---TT--SEE-B--HHHHHHC----SSSHHHHHH
T ss_pred             CcHHHHCCCCCceECCCCCCchhhhhCCHHHHHHHhCCCcCCCHHHHHH
Confidence            3678899999999999999999999999999999999999999999873

...

>PLN02778 3,5-epimerase/4-reductase

Probab=99.01  E-value=1.9e-09  Score=72.55  Aligned_cols=78  Identities=12%  Similarity=0.068  Sum_probs=57.6

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccc---eEccC-CCC--ccchhccCH
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPY---IVEAR-REG--DIVSMYANT   91 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~---~~~~~-~~~--~~~~~~~d~   91 (111)
                      ++|+|++|+++|++.++++.     .+++||+++++.+|+.|+++.+++.++.+.++   ...+. ...  ......+|+
T Consensus       192 ~s~~yv~D~v~al~~~l~~~-----~~g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~Ld~  266 (298)
T PLN02778        192 NSMTILDELLPISIEMAKRN-----LTGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNELDT  266 (298)
T ss_pred             CCCEEHHHHHHHHHHHHhCC-----CCCeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHHHHHHhCCCccccccH
Confidence            57999999999999998764     45799999999999999999999999965321   11111 000  111236899


Q ss_pred             HHHHHhhCC
Q psy16546         92 DLAQRELGW  100 (111)
Q Consensus        92 ~k~~~~lg~  100 (111)
                      +|+++.++-
T Consensus       267 ~k~~~~~~~  275 (298)
T PLN02778        267 TKLKREFPE  275 (298)
T ss_pred             HHHHHhccc
Confidence            999997764

>KOG3019|consensus

Probab=99.01  E-value=1.1e-09  Score=70.70  Aligned_cols=94  Identities=16%  Similarity=0.116  Sum_probs=69.0

Q ss_pred             CCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEcc----------CC
Q psy16546         11 TEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEA----------RR   80 (111)
Q Consensus        11 ~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~----------~~   80 (111)
                      +.+|+|+.+|||++|+|..+..++++++    ..++.|-.++++.+..||++.++++++++. +...|          .+
T Consensus       205 lGsG~Q~fpWIHv~DL~~li~~ale~~~----v~GViNgvAP~~~~n~Ef~q~lg~aL~Rp~-~~pvP~fvvqA~fG~er  279 (315)
T KOG3019|consen  205 LGSGQQWFPWIHVDDLVNLIYEALENPS----VKGVINGVAPNPVRNGEFCQQLGSALSRPS-WLPVPDFVVQALFGPER  279 (315)
T ss_pred             CCCCCeeeeeeehHHHHHHHHHHHhcCC----CCceecccCCCccchHHHHHHHHHHhCCCc-ccCCcHHHHHHHhCccc
Confidence            3499999999999999999999999963    689999999999999999999999999762 11122          21


Q ss_pred             CCccc-hhccCHHHHHHhhCCCccc-chHhhh
Q psy16546         81 EGDIV-SMYANTDLAQRELGWSARC-TVEKMC  110 (111)
Q Consensus        81 ~~~~~-~~~~d~~k~~~~lg~~p~~-~~~~~l  110 (111)
                      ..-+. ...+-..|+.. +||+..| .+.+++
T Consensus       280 A~~vLeGqKV~Pqral~-~Gf~f~yp~vk~Al  310 (315)
T KOG3019|consen  280 ATVVLEGQKVLPQRALE-LGFEFKYPYVKDAL  310 (315)
T ss_pred             eeEEeeCCcccchhHhh-cCceeechHHHHHH
Confidence            11100 11123555555 8998887 566665

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=99.01  E-value=1.1e-09  Score=72.84  Aligned_cols=63  Identities=16%  Similarity=0.118  Sum_probs=55.2

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEcc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEA   78 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~   78 (111)
                      .|+..++|+|++|+|+++..++.++  .. .+++|++++++.+|+.|+++.+.+.+|++.+....+
T Consensus       161 ~g~~~~~~v~~~Dva~~~~~~l~~~--~~-~~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~  223 (285)
T TIGR03649       161 TGDGKIPFVSADDIARVAYRALTDK--VA-PNTDYVVLGPELLTYDDVAEILSRVLGRKITHVKLT  223 (285)
T ss_pred             CCCCccCcccHHHHHHHHHHHhcCC--Cc-CCCeEEeeCCccCCHHHHHHHHHHHhCCceEEEeCC
Confidence            6788899999999999999999875  34 578999999999999999999999999987665554

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=98.95  E-value=1e-08  Score=68.22  Aligned_cols=91  Identities=14%  Similarity=0.046  Sum_probs=72.0

Q ss_pred             CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccce---E---ccCCCCccchhc
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI---V---EARREGDIVSMY   88 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~---~---~~~~~~~~~~~~   88 (111)
                      +|..+.+++.|+|+++..+++..   . .+++||+++...+||.||++.|.+.++.+....   .   .|.....+..+.
T Consensus       177 Dq~gsPt~~~dlA~~i~~ll~~~---~-~~~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~~~~~~a~RP~~S~  252 (281)
T COG1091         177 DQYGSPTYTEDLADAILELLEKE---K-EGGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSS  252 (281)
T ss_pred             CeeeCCccHHHHHHHHHHHHhcc---c-cCcEEEEeCCCcccHHHHHHHHHHHhCCCccccccccccccCccCCCCcccc
Confidence            78889999999999999999875   3 456999999999999999999999998554222   1   123334445577


Q ss_pred             cCHHHHHHhhCCCcccchHhhh
Q psy16546         89 ANTDLAQRELGWSARCTVEKMC  110 (111)
Q Consensus        89 ~d~~k~~~~lg~~p~~~~~~~l  110 (111)
                      +|+.|+.+.+|+.|. ++++++
T Consensus       253 L~~~k~~~~~g~~~~-~w~~~l  273 (281)
T COG1091         253 LDTKKLEKAFGLSLP-EWREAL  273 (281)
T ss_pred             cchHHHHHHhCCCCc-cHHHHH
Confidence            999999999998775 777665

>KOG1502|consensus

Probab=98.94  E-value=6.8e-09  Score=70.21  Aligned_cols=87  Identities=20%  Similarity=0.180  Sum_probs=60.9

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEcc-CCCCccchhccCHHHHHH
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEA-RREGDIVSMYANTDLAQR   96 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~d~~k~~~   96 (111)
                      ..||||+|+|+||+.|++++  .  .+|+|.+. ++..++.|+++++.+.++...-....+ ..........++++|+++
T Consensus       226 ~~~VdVrDVA~AHv~a~E~~--~--a~GRyic~-~~~~~~~ei~~~l~~~~P~~~ip~~~~~~~~~~~~~~~~~~~k~k~  300 (327)
T KOG1502|consen  226 LAFVDVRDVALAHVLALEKP--S--AKGRYICV-GEVVSIKEIADILRELFPDYPIPKKNAEEHEGFLTSFKVSSEKLKS  300 (327)
T ss_pred             eeeEeHHHHHHHHHHHHcCc--c--cCceEEEe-cCcccHHHHHHHHHHhCCCCCCCCCCCccccccccccccccHHHHh
Confidence            34999999999999999997  3  46888776 456669999999999987443111111 112333334579999999


Q ss_pred             hhCCCcccchHhhh
Q psy16546         97 ELGWSARCTVEKMC  110 (111)
Q Consensus        97 ~lg~~p~~~~~~~l  110 (111)
                      ..||+ .+++++++
T Consensus       301 lg~~~-~~~l~e~~  313 (327)
T KOG1502|consen  301 LGGFK-FRPLEETL  313 (327)
T ss_pred             cccce-ecChHHHH
Confidence            44465 45888765

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=98.93  E-value=5.7e-09  Score=72.64  Aligned_cols=73  Identities=21%  Similarity=0.160  Sum_probs=60.1

Q ss_pred             eeeeCCCCCCCCCCccc-eeeeHHHHHHHHHHHHhhhhccccccceEEecCC-CcccHHHHHHHHHHHhCCCccceEccC
Q psy16546          2 ITVFGADYGTEDGTGIR-DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG-QGTSVLQLLRTFERVTGKPVPYIVEAR   79 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r-~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~-~~~s~~e~~~~i~~~~~~~~~~~~~~~   79 (111)
                      +.++|      +|++.| .+||++|+|++++.++.++  .. .+++||++++ +.+|++|+++++.+.+|.+.++...|.
T Consensus       237 ~~~~G------dG~~~~~~~I~v~DlA~~i~~~~~~~--~~-~~~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~~~~vp~  307 (390)
T PLN02657        237 YVMFG------DGKLCACKPISEADLASFIADCVLDE--SK-INKVLPIGGPGKALTPLEQGEMLFRILGKEPKFFKVPI  307 (390)
T ss_pred             eEEec------CCcccccCceeHHHHHHHHHHHHhCc--cc-cCCEEEcCCCCcccCHHHHHHHHHHHhCCCCceEEcCH
Confidence            44567      998877 5799999999999999764  34 6799999985 689999999999999998887777776


Q ss_pred             CCCc
Q psy16546         80 REGD   83 (111)
Q Consensus        80 ~~~~   83 (111)
                      +..+
T Consensus       308 ~~~~  311 (390)
T PLN02657        308 QIMD  311 (390)
T ss_pred             HHHH
Confidence            5433

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=98.90  E-value=8e-09  Score=69.04  Aligned_cols=61  Identities=25%  Similarity=0.378  Sum_probs=53.6

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhc-----cccccceEEecCCCccc-HHHHHHHHHHHhCCCccc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQG-----EHLKIKFYNLGTGQGTS-VLQLLRTFERVTGKPVPY   74 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~-----~~~~~~~yni~~~~~~s-~~e~~~~i~~~~~~~~~~   74 (111)
                      +|+...+|+||+|+|.|+++|++...+     .. .|+.|+|++++++. +++|...+.+.+|.+.+.
T Consensus       208 ~~~~~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~-~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~~~  274 (280)
T PF01073_consen  208 DGNNLFDFVYVENVAHAHVLAAQALLEPGKPERV-AGQAYFITDGEPVPSFWDFMRPLWEALGYPPPK  274 (280)
T ss_pred             CCCceECcEeHHHHHHHHHHHHHHhccccccccC-CCcEEEEECCCccCcHHHHHHHHHHHCCCCCCc
Confidence            888999999999999999999875422     35 78999999999999 999999999999987665

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK07201 short chain dehydrogenase; Provisional

Probab=98.89  E-value=6.7e-09  Score=76.13  Aligned_cols=57  Identities=18%  Similarity=0.189  Sum_probs=50.0

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV   72 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~   72 (111)
                      ++...++|+||+|+|+++..+++.+  .. .+++||+++++++|+.|+++.+.+.+|.+.
T Consensus       215 ~~~~~~~~v~vddva~ai~~~~~~~--~~-~g~~~ni~~~~~~s~~el~~~i~~~~g~~~  271 (657)
T PRK07201        215 PDGGRTNIVPVDYVADALDHLMHKD--GR-DGQTFHLTDPKPQRVGDIYNAFARAAGAPP  271 (657)
T ss_pred             CCCCeeeeeeHHHHHHHHHHHhcCc--CC-CCCEEEeCCCCCCcHHHHHHHHHHHhCCCc
Confidence            5566789999999999999998764  34 578999999999999999999999999776

>PLN02996 fatty acyl-CoA reductase

Probab=98.89  E-value=4.9e-09  Score=74.94  Aligned_cols=59  Identities=17%  Similarity=0.156  Sum_probs=49.9

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhh-ccccccceEEecCC--CcccHHHHHHHHHHHhCCCc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQ-GEHLKIKFYNLGTG--QGTSVLQLLRTFERVTGKPV   72 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~-~~~~~~~~yni~~~--~~~s~~e~~~~i~~~~~~~~   72 (111)
                      +|++.|||+||+|+|+|++.++.+.. ... .+++||++++  +++|+.++++.+.+.++..+
T Consensus       300 dg~~~~D~v~Vddvv~a~l~a~~~~~~~~~-~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p  361 (491)
T PLN02996        300 DPNSVLDVIPADMVVNAMIVAMAAHAGGQG-SEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNP  361 (491)
T ss_pred             CCCeecceecccHHHHHHHHHHHHhhccCC-CCcEEEecCCCCCcccHHHHHHHHHHHhhhCC
Confidence            99999999999999999999988631 112 4679999998  89999999999999887543

>PLN02583 cinnamoyl-CoA reductase

Probab=98.88  E-value=1.2e-08  Score=68.50  Aligned_cols=80  Identities=10%  Similarity=-0.013  Sum_probs=56.5

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCC-ccceEccCCCCccchhccCHHHHH
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKP-VPYIVEARREGDIVSMYANTDLAQ   95 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~d~~k~~   95 (111)
                      .++||||+|+|+|++++++++  .  .++.|+++++...++.++++++.+.++.- .+.... ..........++++|++
T Consensus       216 ~~~~v~V~Dva~a~~~al~~~--~--~~~r~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~k~~  290 (297)
T PLN02583        216 VLVTVDVNFLVDAHIRAFEDV--S--SYGRYLCFNHIVNTEEDAVKLAQMLSPLIPSPPPYE-MQGSEVYQQRIRNKKLN  290 (297)
T ss_pred             CcceEEHHHHHHHHHHHhcCc--c--cCCcEEEecCCCccHHHHHHHHHHhCCCCCCCCccc-ccCCCccccccChHHHH
Confidence            468999999999999999975  3  45689888776666788999999988632 211111 11122234567999998


Q ss_pred             HhhCCCc
Q psy16546         96 RELGWSA  102 (111)
Q Consensus        96 ~~lg~~p  102 (111)
                      + ||++.
T Consensus       291 ~-l~~~~  296 (297)
T PLN02583        291 K-LMEDF  296 (297)
T ss_pred             H-hCccc
Confidence            8 98863

>PRK12320 hypothetical protein; Provisional

Probab=98.81  E-value=1.7e-08  Score=74.51  Aligned_cols=81  Identities=22%  Similarity=0.229  Sum_probs=61.7

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCccchhccCHHHHHHh
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRE   97 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~   97 (111)
                      ..++||+|++++++.+++..     .+++|||++++.+|+.|+++++..... ...    +....+......+...++..
T Consensus       158 I~vIyVdDvv~alv~al~~~-----~~GiyNIG~~~~~Si~el~~~i~~~~p-~~~----~~~~~~~~~~~pdi~~a~~~  227 (699)
T PRK12320        158 IRVLHLDDLVRFLVLALNTD-----RNGVVDLATPDTTNVVTAWRLLRSVDP-HLR----TRRVRSWEQLIPEVDIAAVQ  227 (699)
T ss_pred             eEEEEHHHHHHHHHHHHhCC-----CCCEEEEeCCCeeEHHHHHHHHHHhCC-Ccc----ccccccHHHhCCCCchhhhh
Confidence            45689999999999999864     456999999999999999999877622 111    11334455566688888888


Q ss_pred             hCCCcccchHh
Q psy16546         98 LGWSARCTVEK  108 (111)
Q Consensus        98 lg~~p~~~~~~  108 (111)
                      ++|.|+.+++.
T Consensus       228 ~~w~~~~~~~~  238 (699)
T PRK12320        228 EDWNFEFGWQA  238 (699)
T ss_pred             cCCCCcchHHH
Confidence            99999987765

>KOG1430|consensus

Probab=98.77  E-value=3.6e-08  Score=67.72  Aligned_cols=97  Identities=21%  Similarity=0.280  Sum_probs=76.2

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhh---ccccccceEEecCCCcccHHHHHHHHHHHhCCCcc-ceEccCC--------
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQ---GEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP-YIVEARR--------   80 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~---~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~-~~~~~~~--------   80 (111)
                      +++..-||+|++.++.|++.|.....   +.. .|+.|+|++++++...++...+.+.+|...+ ....|..        
T Consensus       210 ~~~~~~~~~~~~Nva~ahilA~~aL~~~~~~~-~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l  288 (361)
T KOG1430|consen  210 DGENLNDFTYGENVAWAHILAARALLDKSPSV-NGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYL  288 (361)
T ss_pred             ccccccceEEechhHHHHHHHHHHHHhcCCcc-CceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHH
Confidence            88889999999999999999887542   234 7899999999999999999999999998766 3323221        


Q ss_pred             ------------CC----cc----chhccCHHHHHHhhCCCcccchHhhh
Q psy16546         81 ------------EG----DI----VSMYANTDLAQRELGWSARCTVEKMC  110 (111)
Q Consensus        81 ------------~~----~~----~~~~~d~~k~~~~lg~~p~~~~~~~l  110 (111)
                                  +.    .+    .....|.+|+++.+||.|..++++++
T Consensus       289 ~e~~~~~l~p~~p~lt~~~v~~~~~~~~f~~~kA~~~lgY~P~~~~~e~~  338 (361)
T KOG1430|consen  289 LEIVYFLLRPYQPILTRFRVALLGVTRTFSIEKAKRELGYKPLVSLEEAI  338 (361)
T ss_pred             HHHHHHhccCCCCCcChhheeeeccccccCHHHHHHhhCCCCcCCHHHHH
Confidence                        00    00    11456999999999999999999875

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=98.75  E-value=2.1e-08  Score=64.57  Aligned_cols=41  Identities=46%  Similarity=0.674  Sum_probs=36.6

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEec
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLG   50 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~   50 (111)
                      |+.++|      +|++.|+|+|++|+|++++.+++++  .. .+++||||
T Consensus       196 ~~~~~~------~~~~~~~~i~v~D~a~~~~~~~~~~--~~-~~~~yNig  236 (236)
T PF01370_consen  196 PIKIPG------DGSQVRDFIHVDDLAEAIVAALENP--KA-AGGIYNIG  236 (236)
T ss_dssp             SEEEES------TSSCEEEEEEHHHHHHHHHHHHHHS--CT-TTEEEEES
T ss_pred             cccccC------CCCCccceEEHHHHHHHHHHHHhCC--CC-CCCEEEeC
Confidence            467788      9999999999999999999999998  34 58999986

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=98.46  E-value=5.4e-07  Score=66.62  Aligned_cols=85  Identities=7%  Similarity=0.003  Sum_probs=60.7

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceE-----cc--CCCCccchhccC
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIV-----EA--RREGDIVSMYAN   90 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~-----~~--~~~~~~~~~~~d   90 (111)
                      .+..+++|++.+++.+++..     .+++||+++++.+|+.|+++.|.+.++....+..     .+  .....+.. .+|
T Consensus       563 ~~~~~~~~~~~~~~~l~~~~-----~~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~a~rp~~-~l~  636 (668)
T PLN02260        563 NSMTVLDELLPISIEMAKRN-----LRGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLEEQAKVIVAPRSNN-EMD  636 (668)
T ss_pred             CCceehhhHHHHHHHHHHhC-----CCceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHHHhhhHhhCCCccc-ccc
Confidence            35788899999988888753     5699999999999999999999998852211111     11  11122233 789


Q ss_pred             HHHHHHhhCCCcccchHhhh
Q psy16546         91 TDLAQRELGWSARCTVEKMC  110 (111)
Q Consensus        91 ~~k~~~~lg~~p~~~~~~~l  110 (111)
                      ++|+++.+|. + .+++++|
T Consensus       637 ~~k~~~~~~~-~-~~~~~~l  654 (668)
T PLN02260        637 ASKLKKEFPE-L-LSIKESL  654 (668)
T ss_pred             HHHHHHhCcc-c-cchHHHH
Confidence            9999998887 4 3677765

>TIGR01746 Thioester-redct thioester reductase domain

Probab=98.23  E-value=3.7e-06  Score=57.28  Aligned_cols=55  Identities=18%  Similarity=0.131  Sum_probs=45.5

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCcc
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP   73 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~   73 (111)
                      .++|+|++|+|++++.++.++.... .+++||+++++++++.++++.+.+ +|.+.+
T Consensus       229 ~~~~~~vddva~ai~~~~~~~~~~~-~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~~  283 (367)
T TIGR01746       229 TEDLTPVDYVARAIVALSSQPAASA-GGPVFHVVNPEPVSLDEFLEWLER-AGYNLK  283 (367)
T ss_pred             ccCcccHHHHHHHHHHHHhCCCccc-CCceEEecCCCCCCHHHHHHHHHH-cCCCCC
Confidence            5789999999999999988751101 278999999999999999999999 776644

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.85  E-value=6.6e-05  Score=48.64  Aligned_cols=60  Identities=20%  Similarity=0.198  Sum_probs=49.1

Q ss_pred             CCCccceee-eHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccc
Q psy16546         13 DGTGIRDYI-HVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPY   74 (111)
Q Consensus        13 ~g~~~r~~v-~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~   74 (111)
                      +++....++ ..+|++++...++.++.... .+..+.++ ++.+|..|+++.+.+.+|+++++
T Consensus       171 ~~~~~~~~~~~~~Dvg~~va~il~~p~~~~-~~~~~~~~-~~~~t~~eia~~~s~~~G~~v~y  231 (233)
T PF05368_consen  171 PGNQKAVPVTDTRDVGRAVAAILLDPEKHN-NGKTIFLA-GETLTYNEIAAILSKVLGKKVKY  231 (233)
T ss_dssp             TSTSEEEEEEHHHHHHHHHHHHHHSGGGTT-EEEEEEEG-GGEEEHHHHHHHHHHHHTSEEEE
T ss_pred             CCCccccccccHHHHHHHHHHHHcChHHhc-CCEEEEeC-CCCCCHHHHHHHHHHHHCCccEE
Confidence            888777775 99999999999999873222 36777776 48899999999999999987654

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>KOG2865|consensus

Probab=97.73  E-value=8.5e-05  Score=50.01  Aligned_cols=61  Identities=16%  Similarity=0.279  Sum_probs=52.2

Q ss_pred             CeeeeCCCCCCCCCC-ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCC
Q psy16546          1 MITVFGADYGTEDGT-GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGK   70 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~-~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~   70 (111)
                      +++|++      .|. .....|||-|+|.+++.|++.+  .. .|.+|...++..+.+.|+++.+-+....
T Consensus       234 ~~pL~~------~GekT~K~PVyV~DVaa~IvnAvkDp--~s-~Gktye~vGP~~yql~eLvd~my~~~~~  295 (391)
T KOG2865|consen  234 FLPLIG------KGEKTVKQPVYVVDVAAAIVNAVKDP--DS-MGKTYEFVGPDRYQLSELVDIMYDMARE  295 (391)
T ss_pred             ceeeec------CCcceeeccEEEehHHHHHHHhccCc--cc-cCceeeecCCchhhHHHHHHHHHHHHhh
Confidence            356777      774 5568899999999999999987  66 7999999999999999999999887754

>PLN02503 fatty acyl-CoA reductase 2

Probab=97.57  E-value=0.00032  Score=51.74  Aligned_cols=58  Identities=19%  Similarity=0.256  Sum_probs=47.5

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhc--cccccceEEecCC--CcccHHHHHHHHHHHhCCC
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQG--EHLKIKFYNLGTG--QGTSVLQLLRTFERVTGKP   71 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~--~~~~~~~yni~~~--~~~s~~e~~~~i~~~~~~~   71 (111)
                      +++..-|+|+|+.+|+|++.++.....  .. .+.+||++++  +++++.++++.+.+.+...
T Consensus       414 ~~~~~~DiVPVD~vvna~i~a~a~~~~~~~~-~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~~  475 (605)
T PLN02503        414 DPNGVLDVVPADMVVNATLAAMAKHGGAAKP-EINVYQIASSVVNPLVFQDLARLLYEHYKSS  475 (605)
T ss_pred             CCCeeEeEEeecHHHHHHHHHHHhhhcccCC-CCCEEEeCCCCCCCeEHHHHHHHHHHHHhhC
Confidence            889999999999999999999543211  12 4689999988  8999999999999887643

>KOG2774|consensus

Probab=97.49  E-value=0.00035  Score=46.01  Aligned_cols=90  Identities=13%  Similarity=0.016  Sum_probs=64.3

Q ss_pred             CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCC---ccchhccCH
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREG---DIVSMYANT   91 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~d~   91 (111)
                      +..-.++|..|+-++++.++..+.+.. ..++||+. +-..|-.|++..+.+.+. ...+.+.+..-.   +.....+|.
T Consensus       248 dtrlpmmy~~dc~~~~~~~~~a~~~~l-krr~ynvt-~~sftpee~~~~~~~~~p-~~~i~y~~~srq~iad~wp~~~dd  324 (366)
T KOG2774|consen  248 DTRLPMMYDTDCMASVIQLLAADSQSL-KRRTYNVT-GFSFTPEEIADAIRRVMP-GFEIDYDICTRQSIADSWPMSLDD  324 (366)
T ss_pred             CccCceeehHHHHHHHHHHHhCCHHHh-hhheeeec-eeccCHHHHHHHHHhhCC-CceeecccchhhhhhhhcccccCc
Confidence            445589999999999999998775455 77899998 678999999999999885 223333332111   112244688


Q ss_pred             HHHHHhhCCCcccchH
Q psy16546         92 DLAQRELGWSARCTVE  107 (111)
Q Consensus        92 ~k~~~~lg~~p~~~~~  107 (111)
                      +.+++++.|+-.+.+.
T Consensus       325 s~ar~~wh~~h~~~l~  340 (366)
T KOG2774|consen  325 SEARTEWHEKHSLHLL  340 (366)
T ss_pred             hhHhhHHHHhhhhhHH
Confidence            8899888887665443

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=97.40  E-value=0.00045  Score=54.97  Aligned_cols=57  Identities=16%  Similarity=0.075  Sum_probs=45.6

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCC
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKP   71 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~   71 (111)
                      ++...++|++|+|+|++++.++.++.... ...+||++++..+++.++++.+.+. |.+
T Consensus      1209 ~~~~~~~~~~Vddva~ai~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~l~~~-g~~ 1265 (1389)
T TIGR03443      1209 NINNTVNMVPVDHVARVVVAAALNPPKES-ELAVAHVTGHPRIRFNDFLGTLKTY-GYD 1265 (1389)
T ss_pred             CCCCccccccHHHHHHHHHHHHhCCcccC-CCCEEEeCCCCCCcHHHHHHHHHHh-CCC
Confidence            55667999999999999999987652112 3468999999999999999999764 544

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.68  E-value=0.018  Score=42.18  Aligned_cols=74  Identities=14%  Similarity=0.203  Sum_probs=61.4

Q ss_pred             CCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhC----CCccceEccCCC
Q psy16546          6 GADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTG----KPVPYIVEARRE   81 (111)
Q Consensus         6 g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~----~~~~~~~~~~~~   81 (111)
                      |.+...++.+-.|=|+.+.|+|+..++|....   . .|++|-+--|+++++.|+++.+-+.+|    .+.++.+...+|
T Consensus       437 GgplTvTdp~mtRyfMTI~EAv~LVlqA~a~~---~-gGeifvldMGepvkI~dLAk~mi~l~g~~~~~dI~I~~~GlRp  512 (588)
T COG1086         437 GGPLTVTDPDMTRFFMTIPEAVQLVLQAGAIA---K-GGEIFVLDMGEPVKIIDLAKAMIELAGQTPPGDIAIKIIGLRP  512 (588)
T ss_pred             CCCccccCCCceeEEEEHHHHHHHHHHHHhhc---C-CCcEEEEcCCCCeEHHHHHHHHHHHhCCCCCCCCCeEEEecCC
Confidence            45677889999999999999999999999984   4 789999998999999999999999997    234555555555


Q ss_pred             Cc
Q psy16546         82 GD   83 (111)
Q Consensus        82 ~~   83 (111)
                      ++
T Consensus       513 GE  514 (588)
T COG1086         513 GE  514 (588)
T ss_pred             ch
Confidence            54

>PRK07074 short chain dehydrogenase; Provisional

Probab=96.53  E-value=0.0035  Score=40.95  Aligned_cols=50  Identities=12%  Similarity=0.058  Sum_probs=39.9

Q ss_pred             ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHH
Q psy16546         16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFER   66 (111)
Q Consensus        16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~   66 (111)
                      ..++|+|++|++++++.++....... .+..+++.++...+..|+++.+.+
T Consensus       205 ~~~~~~~~~d~a~~~~~l~~~~~~~~-~g~~~~~~~g~~~~~~~~~~~~~~  254 (257)
T PRK07074        205 PLQDFATPDDVANAVLFLASPAARAI-TGVCLPVDGGLTAGNREMARTLTL  254 (257)
T ss_pred             CCCCCCCHHHHHHHHHHHcCchhcCc-CCcEEEeCCCcCcCChhhhhhhcc
Confidence            35789999999999999997542233 467888998999999999887654

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=96.51  E-value=0.0047  Score=41.84  Aligned_cols=75  Identities=15%  Similarity=0.211  Sum_probs=51.7

Q ss_pred             CCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCC------CccceEccCC
Q psy16546          7 ADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGK------PVPYIVEARR   80 (111)
Q Consensus         7 ~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~------~~~~~~~~~~   80 (111)
                      .+...++.+-.|=|+.++++++.++.++...   . .+++|.+--|+++++.++++.+.+..|.      +.++.+...+
T Consensus       190 ~PlTvT~p~mtRffmti~EAv~Lvl~a~~~~---~-~geifvl~mg~~v~I~dlA~~~i~~~g~~~~~~~~i~I~~~GlR  265 (293)
T PF02719_consen  190 GPLTVTDPDMTRFFMTIEEAVQLVLQAAALA---K-GGEIFVLDMGEPVKILDLAEAMIELSGLEPGKKPDIPIKFTGLR  265 (293)
T ss_dssp             SSEEECETT-EEEEE-HHHHHHHHHHHHHH------TTEEEEE---TCEECCCHHHHHHHHTT-EEEESSSS-EEE----
T ss_pred             CcceeCCCCcEEEEecHHHHHHHHHHHHhhC---C-CCcEEEecCCCCcCHHHHHHHHHhhcccccccCCCcceEEcCCC
Confidence            4555668889999999999999999999874   3 7889999888999999999999999973      4566777667


Q ss_pred             CCccc
Q psy16546         81 EGDIV   85 (111)
Q Consensus        81 ~~~~~   85 (111)
                      +++..
T Consensus       266 pGEKl  270 (293)
T PF02719_consen  266 PGEKL  270 (293)
T ss_dssp             TT--S
T ss_pred             CCcce
Confidence            76644

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=95.96  E-value=0.007  Score=39.33  Aligned_cols=41  Identities=12%  Similarity=0.082  Sum_probs=31.2

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG   54 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~   54 (111)
                      .+.+.++|+|++|+|++++.++....... .++.|+++++..
T Consensus       213 ~~~~~~~~~~~~d~a~~~~~~~~~~~~~~-~g~~~~~~~g~~  253 (255)
T TIGR01963       213 PGQPTKRFVTVDEVAETALFLASDAAAGI-TGQAIVLDGGWT  253 (255)
T ss_pred             ccCccccCcCHHHHHHHHHHHcCccccCc-cceEEEEcCccc
Confidence            35567899999999999999998642233 477899987643

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.81  E-value=0.0087  Score=39.09  Aligned_cols=40  Identities=13%  Similarity=-0.050  Sum_probs=30.7

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ   53 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~   53 (111)
                      .+...++|+|++|++++++.++....... .++.|+++++.
T Consensus       220 ~~~~~~~~~~~~dva~a~~~l~~~~~~~~-~g~~~~~~~g~  259 (262)
T PRK13394        220 GKTVDGVFTTVEDVAQTVLFLSSFPSAAL-TGQSFVVSHGW  259 (262)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHcCccccCC-cCCEEeeCCce
Confidence            45567899999999999999998653233 46788888664

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=95.58  E-value=0.079  Score=34.72  Aligned_cols=56  Identities=25%  Similarity=0.284  Sum_probs=50.0

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccce
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI   75 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~   75 (111)
                      ..+++.++|++.++..++..+  .. .+++|.+++++..+..+....+.+..+++....
T Consensus       170 ~~~~i~~~d~a~~~~~~l~~~--~~-~~~~~~l~g~~~~~~~~~~~~l~~~~gr~~~~~  225 (275)
T COG0702         170 RLSPIAVDDVAEALAAALDAP--AT-AGRTYELAGPEALTLAELASGLDYTIGRPVGLI  225 (275)
T ss_pred             ceeeeEHHHHHHHHHHHhcCC--cc-cCcEEEccCCceecHHHHHHHHHHHhCCcceee
Confidence            678999999999999999876  35 789999999999999999999999999886663

>PRK05875 short chain dehydrogenase; Provisional

Probab=94.91  E-value=0.059  Score=35.61  Aligned_cols=51  Identities=16%  Similarity=0.032  Sum_probs=37.9

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcc----cHHHHHHHHHHHhC
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGT----SVLQLLRTFERVTG   69 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~----s~~e~~~~i~~~~~   69 (111)
                      ..+.+++|+|+++..++.++.... .+++|+++++..+    ++.|+++.+.+..+
T Consensus       217 ~~~~~~~dva~~~~~l~~~~~~~~-~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  271 (276)
T PRK05875        217 PRVGEVEDVANLAMFLLSDAASWI-TGQVINVDGGHMLRRGPDFSSMLEPVFGADG  271 (276)
T ss_pred             CCCcCHHHHHHHHHHHcCchhcCc-CCCEEEECCCeeccCCccHHHHHHHHhhHHH
Confidence            457789999999999998763223 4789999988775    67777766665544

>PRK06482 short chain dehydrogenase; Provisional

Probab=94.79  E-value=0.036  Score=36.63  Aligned_cols=45  Identities=11%  Similarity=0.027  Sum_probs=38.1

Q ss_pred             eeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhC
Q psy16546         21 IHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTG   69 (111)
Q Consensus        21 v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~   69 (111)
                      .+++|++++++.++..+   . .+..||+++++..++.++++.+.+.+.
T Consensus       219 ~d~~~~~~a~~~~~~~~---~-~~~~~~~g~~~~~~~~~~~~~~~~~~~  263 (276)
T PRK06482        219 GDPQKMVQAMIASADQT---P-APRRLTLGSDAYASIRAALSERLAALE  263 (276)
T ss_pred             CCHHHHHHHHHHHHcCC---C-CCeEEecChHHHHHHHHHHHHHHHHHH
Confidence            68999999999999864   2 457799999999999999888887775

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.29  E-value=0.052  Score=35.21  Aligned_cols=35  Identities=14%  Similarity=0.121  Sum_probs=28.4

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG   54 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~   54 (111)
                      .+.|++++|+|++++.+++..  .. .+++|+++++..
T Consensus       212 ~~~~~~~~dva~~~~~~~~~~--~~-~g~~~~i~~g~~  246 (252)
T PRK06077        212 MGKILDPEEVAEFVAAILKIE--SI-TGQVFVLDSGES  246 (252)
T ss_pred             CCCCCCHHHHHHHHHHHhCcc--cc-CCCeEEecCCee
Confidence            346899999999999999754  44 588999998754

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=94.28  E-value=0.048  Score=35.62  Aligned_cols=43  Identities=14%  Similarity=-0.028  Sum_probs=33.1

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS   56 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s   56 (111)
                      ++...+.+.+.+|+|+++..++....... .+.+|++++|+.+|
T Consensus       215 ~~~~~~~~~~~~dva~~~~~l~s~~~~~~-~g~~~~v~gg~~~~  257 (257)
T PRK07067        215 EAVPLGRMGVPDDLTGMALFLASADADYI-VAQTYNVDGGNWMS  257 (257)
T ss_pred             hcCCCCCccCHHHHHHHHHHHhCcccccc-cCcEEeecCCEeCC
Confidence            34567789999999999999998653334 57899999876543

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=94.22  E-value=0.048  Score=35.45  Aligned_cols=38  Identities=8%  Similarity=-0.052  Sum_probs=28.6

Q ss_pred             CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546         14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG   52 (111)
Q Consensus        14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~   52 (111)
                      +...+.|++++|+|+++..++....... .++.|+++++
T Consensus       217 ~~~~~~~~~~~d~a~~~~~l~~~~~~~~-~g~~~~~~~g  254 (258)
T PRK12429        217 LVPQKRFTTVEEIADYALFLASFAAKGV-TGQAWVVDGG  254 (258)
T ss_pred             cCCccccCCHHHHHHHHHHHcCccccCc-cCCeEEeCCC
Confidence            3455789999999999999987642233 4788888865

>PRK06194 hypothetical protein; Provisional

Probab=93.96  E-value=0.026  Score=37.51  Aligned_cols=65  Identities=8%  Similarity=0.013  Sum_probs=44.5

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEc-cCCCCccchhccCH
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVE-ARREGDIVSMYANT   91 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~d~   91 (111)
                      +|.+.|+|+|++|++.++..          .+.         ++..++++.+.+.+......... +.+..+...++.|.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~----------~~~---------~s~~dva~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (287)
T PRK06194        214 TAPPTRSQLIAQAMSQKAVG----------SGK---------VTAEEVAQLVFDAIRAGRFYIYSHPQALASVRTRMEDI  274 (287)
T ss_pred             CccccchhhHHHHHHHhhhh----------ccC---------CCHHHHHHHHHHHHHcCCeEEEcCHHHHHHHHHHHHHH
Confidence            78899999999999887531          111         68999999999987644333332 33345555667788


Q ss_pred             HHHHH
Q psy16546         92 DLAQR   96 (111)
Q Consensus        92 ~k~~~   96 (111)
                      +|+++
T Consensus       275 ~~~~~  279 (287)
T PRK06194        275 VQQRN  279 (287)
T ss_pred             HHhcC
Confidence            77754

>PRK07806 short chain dehydrogenase; Provisional

Probab=93.74  E-value=0.08  Score=34.31  Aligned_cols=34  Identities=12%  Similarity=0.003  Sum_probs=28.6

Q ss_pred             eeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcc
Q psy16546         19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGT   55 (111)
Q Consensus        19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~   55 (111)
                      .|++++|+|++++.+++..  .. .+.+|++++++..
T Consensus       212 ~~~~~~dva~~~~~l~~~~--~~-~g~~~~i~~~~~~  245 (248)
T PRK07806        212 KLYTVSEFAAEVARAVTAP--VP-SGHIEYVGGADYF  245 (248)
T ss_pred             ccCCHHHHHHHHHHHhhcc--cc-CccEEEecCccce
Confidence            7999999999999999864  45 6889999987653

>KOG1221|consensus

Probab=92.78  E-value=0.73  Score=33.47  Aligned_cols=56  Identities=14%  Similarity=0.093  Sum_probs=43.0

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccc---cccceEEecCC--CcccHHHHHHHHHHHhC
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEH---LKIKFYNLGTG--QGTSVLQLLRTFERVTG   69 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~---~~~~~yni~~~--~~~s~~e~~~~i~~~~~   69 (111)
                      |.+..-|+|-|+.||++++.+.-.- ...   ....+||++++  +++++.++.+...+...
T Consensus       272 d~~~~adiIPvD~vvN~~ia~~~~~-~~~~~~~~~~IY~~tss~~Np~t~~~~~e~~~~~~~  332 (467)
T KOG1221|consen  272 DPKAVADIIPVDMVVNAMIASAWQH-AGNSKEKTPPIYHLTSSNDNPVTWGDFIELALRYFE  332 (467)
T ss_pred             ccccccceeeHHHHHHHHHHHHHHH-hccCCCCCCcEEEecccccCcccHHHHHHHHHHhcc
Confidence            6678889999999999999766322 111   01459999886  47999999999998875

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=92.59  E-value=0.38  Score=31.47  Aligned_cols=45  Identities=20%  Similarity=0.101  Sum_probs=34.0

Q ss_pred             eeeeHHHHHHHHHHHHhhhhccccccceEEecC---CCcccHHHHHHHHHH
Q psy16546         19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGT---GQGTSVLQLLRTFER   66 (111)
Q Consensus        19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~---~~~~s~~e~~~~i~~   66 (111)
                      .+++.+|+|++++.++..+  .. .+.++.+.+   ....++.+++..+.+
T Consensus       203 ~~i~~~dvA~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (251)
T PLN00141        203 GSISRDQVAEVAVEALLCP--ES-SYKVVEIVARADAPKRSYKDLFASIKQ  250 (251)
T ss_pred             CcccHHHHHHHHHHHhcCh--hh-cCcEEEEecCCCCCchhHHHHHHHhhc
Confidence            5799999999999999876  33 456677765   334788888887654

>PRK08324 short chain dehydrogenase; Validated

Probab=91.22  E-value=0.21  Score=37.76  Aligned_cols=42  Identities=12%  Similarity=0.075  Sum_probs=31.8

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGT   55 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~   55 (111)
                      +++..+.+++++|+|++++.++....... .+.+|++++|...
T Consensus       636 ~~~~l~~~v~~~DvA~a~~~l~s~~~~~~-tG~~i~vdgG~~~  677 (681)
T PRK08324        636 ARNLLKREVTPEDVAEAVVFLASGLLSKT-TGAIITVDGGNAA  677 (681)
T ss_pred             hcCCcCCccCHHHHHHHHHHHhCccccCC-cCCEEEECCCchh
Confidence            56677899999999999999885321134 5789999987653

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=90.88  E-value=0.23  Score=32.40  Aligned_cols=40  Identities=10%  Similarity=-0.106  Sum_probs=30.1

Q ss_pred             CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546         14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG   54 (111)
Q Consensus        14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~   54 (111)
                      +...+.+++.+|++.+++.++.+..... .+.+|++++++.
T Consensus       218 ~~~~~~~~~~~dv~~~~~~l~~~~~~~~-~G~~~~v~~g~~  257 (259)
T PRK12384        218 KVPLKRGCDYQDVLNMLLFYASPKASYC-TGQSINVTGGQV  257 (259)
T ss_pred             hCcccCCCCHHHHHHHHHHHcCcccccc-cCceEEEcCCEE
Confidence            4456789999999999998887642223 578899987754

>PRK07775 short chain dehydrogenase; Provisional

Probab=90.75  E-value=0.26  Score=32.65  Aligned_cols=31  Identities=13%  Similarity=0.085  Sum_probs=24.0

Q ss_pred             ccceeeeHHHHHHHHHHHHhhhhccccccceEEec
Q psy16546         16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLG   50 (111)
Q Consensus        16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~   50 (111)
                      ..+.|+|++|+|++++.+++++   . .+.+||+.
T Consensus       219 ~~~~~~~~~dva~a~~~~~~~~---~-~~~~~~~~  249 (274)
T PRK07775        219 RHDYFLRASDLARAITFVAETP---R-GAHVVNME  249 (274)
T ss_pred             ccccccCHHHHHHHHHHHhcCC---C-CCCeeEEe
Confidence            3467999999999999999875   2 45677775

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=90.59  E-value=0.32  Score=31.49  Aligned_cols=37  Identities=14%  Similarity=0.036  Sum_probs=29.1

Q ss_pred             CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ   53 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~   53 (111)
                      ...+.|.|++|++++++.+++.. ... .++.||++++.
T Consensus       209 ~~~~~~~~~edva~~~~~~~~~~-~~~-~g~~~~i~~g~  245 (247)
T PRK12935        209 IPKKRFGQADEIAKGVVYLCRDG-AYI-TGQQLNINGGL  245 (247)
T ss_pred             CCCCCCcCHHHHHHHHHHHcCcc-cCc-cCCEEEeCCCc
Confidence            45678999999999999998753 124 67999998763

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.11  E-value=0.37  Score=30.94  Aligned_cols=37  Identities=8%  Similarity=-0.110  Sum_probs=28.6

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcc
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGT   55 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~   55 (111)
                      ..+++.+|+++++..++++..... .+++|+++++..+
T Consensus       212 ~~~~~~~dva~~~~~~~~~~~~~~-~g~~~~i~~g~~~  248 (249)
T PRK12825        212 GRSGTPEDIARAVAFLCSDASDYI-TGQVIEVTGGVDV  248 (249)
T ss_pred             CCCcCHHHHHHHHHHHhCccccCc-CCCEEEeCCCEee
Confidence            348999999999999997652233 5899999987543

>PRK08263 short chain dehydrogenase; Provisional

Probab=89.64  E-value=0.39  Score=31.77  Aligned_cols=46  Identities=11%  Similarity=-0.072  Sum_probs=34.2

Q ss_pred             cee-eeHHHHHHHHHHHHhhhhccccccceEEecC-CCcccHHHHHHHHHHH
Q psy16546         18 RDY-IHVMDLAVGHVAALNKLQGEHLKIKFYNLGT-GQGTSVLQLLRTFERV   67 (111)
Q Consensus        18 r~~-v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~-~~~~s~~e~~~~i~~~   67 (111)
                      +.+ ++.+|++++++.+++.+  ..  ...|++++ +..++..++.+.+.+.
T Consensus       214 ~~~~~~p~dva~~~~~l~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~  261 (275)
T PRK08263        214 RSVDGDPEAAAEALLKLVDAE--NP--PLRLFLGSGVLDLAKADYERRLATW  261 (275)
T ss_pred             ccCCCCHHHHHHHHHHHHcCC--CC--CeEEEeCchHHHHHHHHHHHHHHHH
Confidence            456 89999999999999975  33  33455554 4678888988888774

>PRK12829 short chain dehydrogenase; Provisional

Probab=89.10  E-value=0.48  Score=30.90  Aligned_cols=36  Identities=6%  Similarity=-0.087  Sum_probs=26.7

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG   54 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~   54 (111)
                      +.+++++|+|+++..++....... .++.|+++++..
T Consensus       227 ~~~~~~~d~a~~~~~l~~~~~~~~-~g~~~~i~~g~~  262 (264)
T PRK12829        227 GRMVEPEDIAATALFLASPAARYI-TGQAISVDGNVE  262 (264)
T ss_pred             CCCCCHHHHHHHHHHHcCccccCc-cCcEEEeCCCcc
Confidence            358999999999998886432233 577899987754

>PRK09135 pteridine reductase; Provisional

Probab=88.68  E-value=0.48  Score=30.51  Aligned_cols=35  Identities=11%  Similarity=-0.033  Sum_probs=25.8

Q ss_pred             eeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc
Q psy16546         20 YIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS   56 (111)
Q Consensus        20 ~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s   56 (111)
                      +.+++|+|+++..++... ... .+++||++++..++
T Consensus       214 ~~~~~d~a~~~~~~~~~~-~~~-~g~~~~i~~g~~~~  248 (249)
T PRK09135        214 IGTPEDIAEAVRFLLADA-SFI-TGQILAVDGGRSLT  248 (249)
T ss_pred             CcCHHHHHHHHHHHcCcc-ccc-cCcEEEECCCeecc
Confidence            457899999997666542 134 68899999987654

>PRK06914 short chain dehydrogenase; Provisional

Probab=88.46  E-value=0.34  Score=32.02  Aligned_cols=37  Identities=19%  Similarity=0.180  Sum_probs=28.9

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHH
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVL   58 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~   58 (111)
                      +.+++++|+|++++.+++++  .  ....|+++++..+++.
T Consensus       224 ~~~~~~~dva~~~~~~~~~~--~--~~~~~~~~~~~~~~~~  260 (280)
T PRK06914        224 DTFGNPIDVANLIVEIAESK--R--PKLRYPIGKGVKLMIL  260 (280)
T ss_pred             hccCCHHHHHHHHHHHHcCC--C--CCcccccCCchHHHHH
Confidence            45789999999999999986  2  3467999877766554

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=86.32  E-value=0.96  Score=29.13  Aligned_cols=35  Identities=9%  Similarity=-0.091  Sum_probs=26.5

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ   53 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~   53 (111)
                      ..+++++|+|+++..++....... .+++|++.+|.
T Consensus       213 ~~~~~~~dva~~~~~l~~~~~~~~-~g~~~~~~~g~  247 (251)
T PRK12826        213 GRLGEPEDIAAAVLFLASDEARYI-TGQTLPVDGGA  247 (251)
T ss_pred             CCCcCHHHHHHHHHHHhCccccCc-CCcEEEECCCc
Confidence            357999999999999887652223 57899988654

>PRK05876 short chain dehydrogenase; Provisional

Probab=85.50  E-value=2.5  Score=28.11  Aligned_cols=47  Identities=26%  Similarity=0.239  Sum_probs=31.5

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHh
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVT   68 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~   68 (111)
                      ++...+++++++|+|++++.++++.       +.|.+.  ...+..++.+...+..
T Consensus       216 ~~~~~~~~~~~~dva~~~~~ai~~~-------~~~~~~--~~~~~~~~~~~~~~~~  262 (275)
T PRK05876        216 PLPLQDDNLGVDDIAQLTADAILAN-------RLYVLP--HAASRASIRRRFERID  262 (275)
T ss_pred             cccccccCCCHHHHHHHHHHHHHcC-------CeEEec--ChhhHHHHHHHHHHHH
Confidence            3345678999999999999999863       445554  2345556555555543

>PRK12828 short chain dehydrogenase; Provisional

Probab=85.27  E-value=1  Score=28.75  Aligned_cols=35  Identities=9%  Similarity=-0.037  Sum_probs=26.2

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ   53 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~   53 (111)
                      ..|++++|+|+++..++.+..... .+..+++.++.
T Consensus       202 ~~~~~~~dva~~~~~~l~~~~~~~-~g~~~~~~g~~  236 (239)
T PRK12828        202 SRWVTPEQIAAVIAFLLSDEAQAI-TGASIPVDGGV  236 (239)
T ss_pred             hcCCCHHHHHHHHHHHhCcccccc-cceEEEecCCE
Confidence            458999999999999998652233 46788887664

>PRK12746 short chain dehydrogenase; Provisional

Probab=83.99  E-value=1.5  Score=28.47  Aligned_cols=35  Identities=11%  Similarity=-0.043  Sum_probs=25.9

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG   52 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~   52 (111)
                      ...+++++|+|+++..++.++.... .+++|+++++
T Consensus       217 ~~~~~~~~dva~~~~~l~~~~~~~~-~g~~~~i~~~  251 (254)
T PRK12746        217 FGRIGQVEDIADAVAFLASSDSRWV-TGQIIDVSGG  251 (254)
T ss_pred             cCCCCCHHHHHHHHHHHcCcccCCc-CCCEEEeCCC
Confidence            3467799999999998887642123 4789999865

>PRK07060 short chain dehydrogenase; Provisional

Probab=83.34  E-value=1.4  Score=28.32  Aligned_cols=35  Identities=14%  Similarity=0.079  Sum_probs=26.3

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG   52 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~   52 (111)
                      .+.|++++|+|++++.++..+.... .++.+++.+|
T Consensus       207 ~~~~~~~~d~a~~~~~l~~~~~~~~-~G~~~~~~~g  241 (245)
T PRK07060        207 LGRFAEVDDVAAPILFLLSDAASMV-SGVSLPVDGG  241 (245)
T ss_pred             CCCCCCHHHHHHHHHHHcCcccCCc-cCcEEeECCC
Confidence            3568999999999999998653233 5777877654

>PRK07774 short chain dehydrogenase; Provisional

Probab=83.24  E-value=1.7  Score=28.12  Aligned_cols=35  Identities=17%  Similarity=-0.012  Sum_probs=26.7

Q ss_pred             eeeHHHHHHHHHHHHhhhhccccccceEEecCCCcc
Q psy16546         20 YIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGT   55 (111)
Q Consensus        20 ~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~   55 (111)
                      +.+++|+|++++.++....... .+++||++++..+
T Consensus       214 ~~~~~d~a~~~~~~~~~~~~~~-~g~~~~v~~g~~~  248 (250)
T PRK07774        214 MGTPEDLVGMCLFLLSDEASWI-TGQIFNVDGGQII  248 (250)
T ss_pred             CcCHHHHHHHHHHHhChhhhCc-CCCEEEECCCeec
Confidence            5678999999999988652224 5789999987654

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=81.80  E-value=1.7  Score=27.76  Aligned_cols=35  Identities=6%  Similarity=-0.111  Sum_probs=26.4

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ   53 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~   53 (111)
                      +.+++.+|+|+++..++....... .+++|++++|.
T Consensus       210 ~~~~~~~dva~~~~~~~~~~~~~~-~g~~~~~~gg~  244 (246)
T PRK05653        210 GRLGQPEEVANAVAFLASDAASYI-TGQVIPVNGGM  244 (246)
T ss_pred             CCCcCHHHHHHHHHHHcCchhcCc-cCCEEEeCCCe
Confidence            567888999999999987542233 57889988764

>PRK09134 short chain dehydrogenase; Provisional

Probab=81.43  E-value=1.6  Score=28.50  Aligned_cols=36  Identities=14%  Similarity=0.007  Sum_probs=27.8

Q ss_pred             eeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHH
Q psy16546         20 YIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVL   58 (111)
Q Consensus        20 ~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~   58 (111)
                      ..+++|+|++++.+++++  .. .++.|++.++..++++
T Consensus       214 ~~~~~d~a~~~~~~~~~~--~~-~g~~~~i~gg~~~~~~  249 (258)
T PRK09134        214 GSTPEEIAAAVRYLLDAP--SV-TGQMIAVDGGQHLAWL  249 (258)
T ss_pred             CcCHHHHHHHHHHHhcCC--Cc-CCCEEEECCCeecccc
Confidence            477999999999999865  44 5778888877665554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	111
1ek5_A	348	Structure Of Human Udp-Galactose 4-Epimerase In Com		8e-34
1i3k_A	348	Molecular Basis For Severe Epimerase-Deficiency Gal		9e-34
1hzj_A	348	Human Udp-Galactose 4-Epimerase: Accommodation Of U		9e-34
3enk_A	341	1.9a Crystal Structure Of Udp-Glucose 4-Epimerase F		1e-28
1a9z_A	338	Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX		2e-26
1lrj_A	338	Crystal Structure Of E. Coli Udp-Galactose 4-Epimer		2e-26
1kvq_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		2e-26
1kvs_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		2e-26
1kvu_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		2e-26
2udp_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		2e-26
1kvr_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		2e-26
1a9y_A	338	Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX		2e-26
1lrk_A	338	Crystal Structure Of Escherichia Coli Udp-Galactose		2e-26
1kvt_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		2e-26
1z45_A	699	Crystal Structure Of The Gal10 Fusion Protein Galac		2e-23
1gy8_A	397	Trypanosoma Brucei Udp-Galactose 4' Epimerase Lengt		1e-18
2c20_A	330	Crystal Structure Of Udp-Glucose 4-Epimerase Length		4e-18
2p5u_A	311	Crystal Structure Of Thermus Thermophilus Hb8 Udp-G		1e-04

>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex With Nad+ Length = 348

Iteration: 1
 Score =  138 bits (347), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + VFG DY TEDGTG+RDYIHV+DLA GH+AAL KL+ E    + YNLGTG G SVLQ++
Sbjct: 223 LNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLK-EQCGCRIYNLGTGTGYSVLQMV 281
Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           +  E+ +GK +PY V ARREGD+ + YAN  LAQ ELGW+A   +++MC+
Sbjct: 282 QAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCE 331

>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency Galactosemia: X-Ray Structure Of The Human V94m- Substituted Udp-Galactose 4-Epimerase Length = 348

Iteration: 1
 Score =  138 bits (347), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + VFG DY TEDGTG+RDYIHV+DLA GH+AAL KL+ E    + YNLGTG G SVLQ++
Sbjct: 223 LNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLK-EQCGCRIYNLGTGTGYSVLQMV 281
Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           +  E+ +GK +PY V ARREGD+ + YAN  LAQ ELGW+A   +++MC+
Sbjct: 282 QAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCE 331

>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N- Acetylglucosamine Within The Active Site Length = 348

Iteration: 1
 Score =  138 bits (347), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + VFG DY TEDGTG+RDYIHV+DLA GH+AAL KL+ E    + YNLGTG G SVLQ++
Sbjct: 223 LNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLK-EQCGCRIYNLGTGTGYSVLQMV 281
Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           +  E+ +GK +PY V ARREGD+ + YAN  LAQ ELGW+A   +++MC+
Sbjct: 282 QAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCE 331

>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From Burkholderia Pseudomallei Length = 341

Iteration: 1
 Score =  120 bits (302), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/109 (51%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + VFG+DY T DGTG+RDYIHV+DLA GH+AAL+ L+     +   NLGTG+G SVL+++
Sbjct: 219 LRVFGSDYPTPDGTGVRDYIHVVDLARGHIAALDALERRDASLTV-NLGTGRGYSVLEVV 277
Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMC 110
           R FE+ +G+ VPY + ARR GD+   YAN   A   +GW A   +E+MC
Sbjct: 278 RAFEKASGRAVPYELVARRPGDVAECYANPAAAAETIGWKAERDLERMC 326

>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Galactose Length = 338

Iteration: 1
 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL  +   +  YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVV 273
Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             F +  GKPV Y    RREGD+ + +A+   A REL W    T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323

>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase Complexed With Udp-N-Acetylglucosamine Length = 338

Iteration: 1
 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL  +   +  YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVV 273
Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             F +  GKPV Y    RREGD+ + +A+   A REL W    T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323

>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL  +   +  YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVV 273
Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             F +  GKPV Y    RREGD+ + +A+   A REL W    T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323

>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL  +   +  YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVV 273
Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             F +  GKPV Y    RREGD+ + +A+   A REL W    T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323

>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL  +   +  YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVV 273
Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             F +  GKPV Y    RREGD+ + +A+   A REL W    T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323

>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL  +   +  YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVV 273
Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             F +  GKPV Y    RREGD+ + +A+   A REL W    T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323

>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL  +   +  YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVV 273
Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             F +  GKPV Y    RREGD+ + +A+   A REL W    T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323

>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Glucose Length = 338

Iteration: 1
 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL  +   +  YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVV 273
Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             F +  GKPV Y    RREGD+ + +A+   A REL W    T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323

>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-Epimerase Mutant Y299c Complexed With Udp-N-Acetylglucosamine Length = 338

Iteration: 1
 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL  +   +  YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVV 273
Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             F +  GKPV Y    RREGD+ + +A+   A REL W    T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPACWADASKADRELNWRVTRTLDEMAQ 323

>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL  +   +  YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVV 273
Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             F +  GKPV Y    RREGD+ + +A+   A REL W    T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323

>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699

Iteration: 1
 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/111 (44%), Positives = 71/111 (63%), Gaps = 3/111 (2%)
Query: 4   VFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLK---IKFYNLGTGQGTSVLQL 60
           +FG DY + DGT IRDYIHV+DLA GH+AAL  L+  +      + +NLG+G+G++V ++
Sbjct: 232 IFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEV 291
Query: 61  LRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
              F + +G  +PY V  RR GD++++ A  D A+REL W     VE  CK
Sbjct: 292 YHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCK 342

>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase Length = 397

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 5/107 (4%)
Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQ--GEHLKIKFY---NLGTGQGTS 56
           + +FG DY T DGT +RDY+HV DLA  H+ AL+ ++  G + K K++   NLGT +G S
Sbjct: 254 MPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYS 313
Query: 57  VLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSAR 103
           V +++    + TG P+P     RREGD   + A +D A+  LGW  +
Sbjct: 314 VREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPK 360

>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase Length = 330

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQ--GEHLKIKFYNLGTGQGTSVLQ 59
           I +FG DY T DGT IRDYIHV DL   H   L  LQ  GE     FYNLG G G SV +
Sbjct: 206 IMMFGDDYNTPDGTCIRDYIHVEDLVAAHFLGLKDLQNGGES---DFYNLGNGNGFSVKE 262
Query: 60  LLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSAR 103
           ++     VT   +P  V  RR GD   + A++  A+ +LGW  R
Sbjct: 263 IVDAVREVTNHEIPAEVAPRRAGDPARLVASSQKAKEKLGWDPR 306

>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose 4- Epimerase Complex With Nad Length = 311

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 17  IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIV 76
           +RDY++V D+A  H  AL  L+G       YN+GTG+G +  ++L       GK      
Sbjct: 214 VRDYVYVGDVAEAHALALFSLEG------IYNVGTGEGHTTREVLMAVAEAAGKAPEVQP 267
Query: 77  EARREGDI 84
              R GD+
Sbjct: 268 APPRPGDL 275

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	111
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	2e-62
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	2e-62
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	3e-62
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	2e-59
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	7e-56
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	8e-54
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	2e-39
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	2e-39
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	1e-30
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	5e-28
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	3e-21
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	4e-21
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	1e-20
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	6e-18
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	1e-16
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	2e-16
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	2e-16
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	3e-16
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	6e-15
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	5e-14
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	2e-13
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	1e-09
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	1e-09
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	9e-09
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	1e-08
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	2e-05
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	1e-04
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	4e-04

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348

 Score =  192 bits (490), Expect = 2e-62
 Identities = 64/109 (58%), Positives = 82/109 (75%), Gaps = 1/109 (0%)

Query: 3   TVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLR 62
            VFG DY TEDGTG+RDYIHV+DLA GH+AAL KL+ E    + YNLGTG G SVLQ+++
Sbjct: 224 NVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLK-EQCGCRIYNLGTGTGYSVLQMVQ 282

Query: 63  TFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             E+ +GK +PY V ARREGD+ + YAN  LAQ ELGW+A   +++MC+
Sbjct: 283 AMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCE 331

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338

 Score =  191 bits (489), Expect = 2e-62
 Identities = 54/109 (49%), Positives = 69/109 (63%), Gaps = 1/109 (0%)

Query: 3   TVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLR 62
            +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL      +  YNLG G G SVL ++ 
Sbjct: 216 AIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLA-NKPGVHIYNLGAGVGNSVLDVVN 274

Query: 63  TFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
            F +  GKPV Y    RREGD+ + +A+   A REL W    T+++M +
Sbjct: 275 AFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341

 Score =  191 bits (489), Expect = 3e-62
 Identities = 56/109 (51%), Positives = 74/109 (67%), Gaps = 1/109 (0%)

Query: 3   TVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLR 62
            VFG+DY T DGTG+RDYIHV+DLA GH+AAL+ L+         NLGTG+G SVL+++R
Sbjct: 220 RVFGSDYPTPDGTGVRDYIHVVDLARGHIAALDALERRD-ASLTVNLGTGRGYSVLEVVR 278

Query: 63  TFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
            FE+ +G+ VPY + ARR GD+   YAN   A   +GW A   +E+MC 
Sbjct: 279 AFEKASGRAVPYELVARRPGDVAECYANPAAAAETIGWKAERDLERMCA 327

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699

 Score =  192 bits (490), Expect = 2e-59
 Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%)

Query: 3   TVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLK---IKFYNLGTGQGTSVLQ 59
            +FG DY + DGT IRDYIHV+DLA GH+AAL  L+  +      + +NLG+G+G++V +
Sbjct: 231 YIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFE 290

Query: 60  LLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           +   F + +G  +PY V  RR GD++++ A  D A+REL W     VE  CK
Sbjct: 291 VYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCK 342

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397

 Score =  177 bits (450), Expect = 7e-56
 Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 6/116 (5%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQ-----GEHLKIKFYNLGTGQGTS 56
           + +FG DY T DGT +RDY+HV DLA  H+ AL+ ++      +      +NLGT +G S
Sbjct: 254 MPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYS 313

Query: 57  VLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSA-RCTVEKMCK 111
           V +++    + TG P+P     RREGD   + A +D A+  LGW     T+E + +
Sbjct: 314 VREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIME 369

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330

 Score =  169 bits (432), Expect = 8e-54
 Identities = 46/111 (41%), Positives = 60/111 (54%), Gaps = 2/111 (1%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           I +FG DY T DGT IRDYIHV DL   H   L  LQ    +  FYNLG G G SV +++
Sbjct: 206 IMMFGDDYNTPDGTCIRDYIHVEDLVAAHFLGLKDLQ-NGGESDFYNLGNGNGFSVKEIV 264

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCT-VEKMCK 111
                VT   +P  V  RR GD   + A++  A+ +LGW  R   V+ + +
Sbjct: 265 DAVREVTNHEIPAEVAPRRAGDPARLVASSQKAKEKLGWDPRYVNVKTIIE 315

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330

 Score =  132 bits (335), Expect = 2e-39
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 13/110 (11%)

Query: 4   VFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRT 63
            F +D        +RD++ + D       +L + +        +N+ TG+G S+ ++   
Sbjct: 209 CFCSDT-------VRDFLDMSDFLAIADLSLQEGRPTG----VFNVSTGEGHSIKEVFDV 257

Query: 64  FERVTGKPV--PYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
                G  +  P  V A    D+ S+  +    + E GW A+   +    
Sbjct: 258 VLDYVGATLAEPVPVVAPGADDVPSVVLDPSKTETEFGWKAKVDFKDTIT 307

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311

 Score =  131 bits (333), Expect = 2e-39
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 8/108 (7%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           +T++       D   +RDY++V D+A  H  AL  L+G       YN+GTG+G +  ++L
Sbjct: 200 VTLYARKTPG-DEGCVRDYVYVGDVAEAHALALFSLEG------IYNVGTGEGHTTREVL 252

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKM 109
                  GK         R GD+     +        GW  +   ++ 
Sbjct: 253 MAVAEAAGKAPEVQPAPPRPGDLERSVLSPLKL-MAHGWRPKVGFQEG 299

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312

 Score =  109 bits (275), Expect = 1e-30
 Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 12/113 (10%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + V G      DGT  + Y++V D     +AA  K +         N+G      VL + 
Sbjct: 191 LEVLG------DGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIA 244

Query: 62  RTFERVTGKPVPYIVEARRE------GDIVSMYANTDLAQRELGWSARCTVEK 108
           +    V G      +           GD+  M        +  GW    T  +
Sbjct: 245 QIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGWRPTMTSAE 297

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313

 Score =  102 bits (257), Expect = 5e-28
 Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 14/110 (12%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + + G      +G   + YI++ D     +  L   +    ++  +N+G+     V ++ 
Sbjct: 192 LEILG------NGEQNKSYIYISDCVDAMLFGLRGDE----RVNIFNIGSEDQIKVKRIA 241

Query: 62  RTFERVTGKPVPYIVEA---RREGDIVSMYANTDLAQRELGWSARCTVEK 108
                  G    +         +GD+  M  + +   + LGW  R   E+
Sbjct: 242 EIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKL-KRLGWKPRYNSEE 290

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333

 Score = 85.0 bits (211), Expect = 3e-21
 Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 7/96 (7%)

Query: 14  GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP 73
               RD++ V DLA   V A++ +         Y+  +G   ++ +L          P  
Sbjct: 215 TKARRDFVFVKDLARATVRAVDGVGHG-----AYHFSSGTDVAIKELYDAVVEAMALPSY 269

Query: 74  YIVEAR--REGDIVSMYANTDLAQRELGWSARCTVE 107
              E R     D  S+  +     ++ G      ++
Sbjct: 270 PEPEIRELGPDDAPSILLDPSRTIQDFGKIEFTPLK 305

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311

 Score = 84.1 bits (209), Expect = 4e-21
 Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 13/109 (11%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNK-LQGEHLKIKFYNLGTGQGTSVLQL 60
           +T+        +    R++++  D A   + AL +           +N+G+G   +  ++
Sbjct: 187 LTLHA------NSVAKREFLYAKDAAKSVIYALKQEKVSG-----TFNIGSGDALTNYEV 235

Query: 61  LRTFERVTGKPVPYIV-EARREGDIVSMYANTDLAQRELGWSARCTVEK 108
             T     G     +V        I S Y ++  A+  L +S       
Sbjct: 236 ANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDYNFAT 284

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404

 Score = 84.0 bits (208), Expect = 1e-20
 Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 14/115 (12%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           +TV+G    T     IRD +  +++A+ + A   +        + +N  T    SV +L 
Sbjct: 263 LTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEF-------RVFNQFTE-QFSVNELA 314

Query: 62  RTFERVTGK-----PVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
               +   K         +   R E +     A       ELG       + +  
Sbjct: 315 SLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKL-MELGLEPHYLSDSLLD 368

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377

 Score = 76.2 bits (188), Expect = 6e-18
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNK-LQGEHLKIKFYNLGTGQGTSVLQL 60
           + +         G   RD+I V D+A G +A       G       YN+ +G+ TS+  L
Sbjct: 248 LPLEN------GGVATRDFIFVEDVANGLIACAADGTPGG-----VYNIASGKETSIADL 296

Query: 61  LRTFERVTGKPVPYIVEARREGDIV-SMYANTDLAQRELGWSARCTVE 107
                 +TG         +R  D     + + + A+RELG+SA  +++
Sbjct: 297 ATKINEITGNNTELDRLPKRPWDNSGKRFGSPEKARRELGFSADVSID 344

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352

 Score = 72.7 bits (179), Expect = 1e-16
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 13/112 (11%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + + G      DG   RD+ ++ +    ++ A         ++  YN+  G  TS+ QL 
Sbjct: 235 VYING------DGETSRDFCYIENTVQANLLAATAGLDARNQV--YNIAVGGRTSLNQLF 286

Query: 62  RTFERVTGK-----PVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEK 108
                   +         +    REGD+    A+   A + LG++ +  V  
Sbjct: 287 FALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPKYDVSA 338

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362

 Score = 72.3 bits (178), Expect = 2e-16
 Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 11/107 (10%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +F        G  +RD++++ D+   +V A+   +        YN+G  Q  S  +++
Sbjct: 217 VKLFE------FGEQLRDFVYIEDVIQANVKAMKAQKSG-----VYNVGYSQARSYNEIV 265

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEK 108
              +   G      ++           A+ +    +L ++    +E 
Sbjct: 266 SILKEHLGDFKVTYIKNPYAFFQKHTQAHIEPTILDLDYTPLYDLES 312

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342

 Score = 71.6 bits (176), Expect = 2e-16
 Identities = 14/110 (12%), Positives = 36/110 (32%), Gaps = 18/110 (16%)

Query: 8   DYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERV 67
            +     + +   IH   +             E +  +      G   +V + +    +V
Sbjct: 233 HWHASPRSAVGFLIHGAMID-----------VEKVGPRRNLSMPGLSATVGEQIEALRKV 281

Query: 68  TGKPVPYIVEARREGDIVSMYANT------DLAQRELGWSARCTVEKMCK 111
            G+    ++  R   +++                RELG++A  + E++ +
Sbjct: 282 AGEKAVALIR-REPNEMIMRMCEGWAPGFEAKRARELGFTAESSFEEIIQ 330

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321

 Score = 71.0 bits (175), Expect = 3e-16
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 12/99 (12%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + V G      DG   RD+ ++ D+    VA  N+           N G+GQ  SV  ++
Sbjct: 198 LPVEG------DGEQRRDFTYITDVVDKLVALANRPLPS-----VVNFGSGQSLSVNDVI 246

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGW 100
           R  +  +        +  R  +I    A+T L  R++G 
Sbjct: 247 RILQATSPAAEV-ARKQPRPNEITEFRADTALQTRQIGE 284

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310

 Score = 67.6 bits (166), Expect = 6e-15
 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 8/99 (8%)

Query: 13  DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV 72
                RD+++V D+A  ++  L            +NLGTG+  S   +         K  
Sbjct: 204 SENFKRDFVYVGDVADVNLWFLENGVSG-----IFNLGTGRAESFQAVADATLAYHKKGQ 258

Query: 73  PYIV---EARREGDIVSMYANTDLAQRELGWSARCTVEK 108
              +   +  +        A+    +         TV +
Sbjct: 259 IEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAE 297

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351

 Score = 65.0 bits (159), Expect = 5e-14
 Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 13/112 (11%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + + G      DG   RD+ ++ ++   ++ +   L  +  K   YN+  G  T++ +L 
Sbjct: 233 VYING------DGETSRDFCYIDNVIQMNILSA--LAKDSAKDNIYNVAVGDRTTLNELS 284

Query: 62  RTFERVTG-----KPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEK 108
                          +       R GD+    A+   A   L +     + +
Sbjct: 285 GYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLLKYRPNIKIRE 336

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 8/99 (8%)

Query: 13  DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV 72
                RD+++V D+A  ++  L            +NLGTG+  S   +         K  
Sbjct: 251 SENFKRDFVYVGDVADVNLWFLENGVSG-----IFNLGTGRAESFQAVADATLAYHKKGQ 305

Query: 73  PYIV---EARREGDIVSMYANTDLAQRELGWSARCTVEK 108
              +   +  +        A+    +         TV +
Sbjct: 306 IEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAE 344

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 10/103 (9%)

Query: 9   YGTEDGTGIRDYIHVMDLAVGHVAALNKL--QGEHLKIKFYNLGTGQG--TSVLQLLRTF 64
            G  +G  +RD +H  D     ++           ++   +N+G       S+L+L +  
Sbjct: 230 SG--NGKQVRDVLHAED----MISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLL 283

Query: 65  ERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVE 107
           E      + +     RE D     A+       + WS + + +
Sbjct: 284 EDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPKVSAK 326

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 13/113 (11%), Positives = 33/113 (29%), Gaps = 11/113 (9%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
              +               +++ D     V      + + +    YN+ T    +  +L 
Sbjct: 195 YKCYL------APNRALPMMYMPDALKALVDLYEADRDKLVLRNGYNV-TAYTFTPSELY 247

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMY---ANTDLAQRELGWSARCTVEKMCK 111
              +    +      E  R   I + +    ++  A  E G+S    +++   
Sbjct: 248 SKIKERIPEFEIEYKEDFR-DKIAATWPESLDSSEASNEWGFSIEYDLDRTID 299

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312

 Score = 50.4 bits (121), Expect = 9e-09
 Identities = 14/111 (12%), Positives = 29/111 (26%), Gaps = 7/111 (6%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
              F               +++ D     +  +     +      YNL     T      
Sbjct: 201 YECFL------SSETKMPMMYMDDAIDATINIMKAPVEKIKIHSSYNLAAMSFTPTEIAN 254

Query: 62  RTFERVTGKPVPYIVEAR-REGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
              + +    + Y  + R +  D      +   A+ +  W     +E M K
Sbjct: 255 EIKKHIPEFTITYEPDFRQKIADSWPASIDDSQAREDWDWKHTFDLESMTK 305

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379

 Score = 49.7 bits (119), Expect = 1e-08
 Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 12/106 (11%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
             ++G      DG   R +  + +   G +        E +     N+G+ +  S+ ++ 
Sbjct: 235 FEMWG------DGLQTRSFTFIDECVEGVLRLTKSDFREPV-----NIGSDEMVSMNEMA 283

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVE 107
                   K +P I        +    ++ +L + +LGW+    ++
Sbjct: 284 EMVLSFEEKKLP-IHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLK 328

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 33/120 (27%)

Query: 16  GIRDYIHVMDLAVGHVAALNKLQ-GEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPY 74
           G R+ I   +   G + AL + + GE      Y L  G    +  L R    + G+P P 
Sbjct: 212 GQRNVIDAAEAGRGLLMALERGRIGER-----YLLT-GHNLEMADLTRRIAELLGQPAPQ 265

Query: 75  IVEAR------REGDIVS--------------------MYANTDLAQRELGWSARCTVEK 108
            +           G +                       + +   A+ ELG+ +   ++ 
Sbjct: 266 PMSMAMARALATLGRLRYRVSGQLPLLDETAIEVMAGGQFLDGRKAREELGFFSTTALDD 325

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 13  DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKI-KFYNLG--TGQGTSVLQLLRTFERVTG 69
           +   IR + HV++   G++    KL  +  +  + +N G      T V  ++    +  G
Sbjct: 225 NPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWG 284

Query: 70  KPVPYIVEARR---EGDIVSMYANTDLAQRELGWSARCTVEK 108
           +   + ++      E   + +  +   A+ +LGW  R  +  
Sbjct: 285 EGASWQLDGNAHPHEAHYLKL--DCSKAKMQLGWHPRWNLNT 324

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 47  YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEAR--REGDIVSMYANTDLAQRELGWSARC 104
           YN+ +G GT +  +L     +    +   +     R  ++ ++  +    +   GW  R 
Sbjct: 246 YNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTGWKPRI 305

Query: 105 TVEKMCK 111
            +EK   
Sbjct: 306 PLEKSLF 312

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	111
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	99.87
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	99.84
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	99.83
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	99.83
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	99.83
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	99.82
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	99.81
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	99.81
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	99.8
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	99.8
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	99.8
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	99.8
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	99.79
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	99.78
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	99.78
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	99.78
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	99.78
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	99.77
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	99.77
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	99.76
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	99.76
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	99.75
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	99.75
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	99.75
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	99.75
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	99.74
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	99.74
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	99.74
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	99.73
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	99.73
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	99.73
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	99.72
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	99.72
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	99.72
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	99.72
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	99.72
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	99.71
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	99.7
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	99.7
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	99.69
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	99.66
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	99.66
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	99.66
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	99.65
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	99.62
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	99.62
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	99.61
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	99.6
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	99.58
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	99.58
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	99.58
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	99.57
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	99.5
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	99.48
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	99.47
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	99.47
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	99.45
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	99.36
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	99.32
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	99.3
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	99.29
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	99.12
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	99.1
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	98.95
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	98.86
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	98.85
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	98.83
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	98.8
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	98.8
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	98.79
4f6c_A	427	AUSA reductase domain protein; thioester reductase	98.68
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	98.6
4f6l_B	508	AUSA reductase domain protein; thioester reductase	98.58
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	98.49
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	98.46
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	98.45
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	98.21
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.17
1xq6_A	253	Unknown protein; structural genomics, protein stru	98.15
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	98.09
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.96
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.45
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.41
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	97.12
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.06
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	96.82
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.36
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.18
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	95.95
1spx_A	278	Short-chain reductase family member (5L265); paral	95.84
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	95.46
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	95.33
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	95.2
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	94.63
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	94.54
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	94.21
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	93.49
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	93.42
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	92.92
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	92.4
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	92.38
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	92.36
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	91.94
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	91.75
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	91.51
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	91.13
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	91.13
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	90.92
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	90.17
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	90.01
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	89.78
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	89.7
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	89.54
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	89.5
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	89.38
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	89.3
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	89.22
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	88.37
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	88.18
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	88.13
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	87.67
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	87.57
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	87.43
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	87.3
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	87.16
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	86.48
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	86.41
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	86.11
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	85.99
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	85.45
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	85.27
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	85.15
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	85.1
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	84.78
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	84.44
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	84.15
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	83.95
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	83.87
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	83.87
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	83.85
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	83.72
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	83.64
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	83.29
4dqx_A	277	Probable oxidoreductase protein; structural genomi	83.22
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	82.91
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	82.84
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	82.61
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	82.29
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	82.17
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	82.1
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	81.84
1xhl_A	297	Short-chain dehydrogenase/reductase family member	81.78
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	81.7
4e4y_A	244	Short chain dehydrogenase family protein; structur	81.57
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	81.32
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	81.08
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	80.92
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	80.47

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.87  E-value=1.1e-21  Score=131.45  Aligned_cols=109  Identities=51%  Similarity=0.920  Sum_probs=96.1

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE   81 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~   81 (111)
                      +.++|....+++|++.|+|+|++|+|++++.++++..... .+++||+++++.+|+.|+++.+.+.+|.+.++...+.++
T Consensus       219 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~-~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~  297 (341)
T 3enk_A          219 LRVFGSDYPTPDGTGVRDYIHVVDLARGHIAALDALERRD-ASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARRP  297 (341)
T ss_dssp             EEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHHHT-SCEEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEECCCT
T ss_pred             eEEeCCccCCCCCCeeEeeEEHHHHHHHHHHHHHhhhcCC-cceEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCCCCC
Confidence            4566766777799999999999999999999998732134 689999999999999999999999999998888888888


Q ss_pred             CccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         82 GDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        82 ~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .+.....+|++|+++.|||+|.++++++|+
T Consensus       298 ~~~~~~~~d~~k~~~~lG~~p~~~l~~~l~  327 (341)
T 3enk_A          298 GDVAECYANPAAAAETIGWKAERDLERMCA  327 (341)
T ss_dssp             TCCSEECBCCHHHHHHHCCCCCCCHHHHHH
T ss_pred             CCccccccCHHHHHHHcCCCCCCCHHHHHH
Confidence            888888899999999999999999999873

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=99.84  E-value=2.9e-20  Score=124.53  Aligned_cols=109  Identities=50%  Similarity=0.911  Sum_probs=90.1

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE   81 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~   81 (111)
                      +.++|....+.+|++.|+|+|++|+|++++.++++..... .+++||+++++.+|+.|+++.+.+.+|.+.+....+.++
T Consensus       215 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~-~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~  293 (338)
T 1udb_A          215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKP-GVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE  293 (338)
T ss_dssp             EEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTCC-EEEEEEESCSCCEEHHHHHHHHHHHHTSCCCEEEECCCT
T ss_pred             cEEecCcccCCCCceeeeeEEHHHHHHHHHHHHhhhhccC-CCcEEEecCCCceeHHHHHHHHHHHhCCCCcceeCCCCC
Confidence            3455544555678999999999999999999998741112 347999999999999999999999999887777777766


Q ss_pred             CccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         82 GDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        82 ~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .+...+.+|++|+++.|||+|.++++++|+
T Consensus       294 ~~~~~~~~d~~k~~~~lG~~p~~~l~~~l~  323 (338)
T 1udb_A          294 GDLPAYWADASKADRELNWRVTRTLDEMAQ  323 (338)
T ss_dssp             TCCSBCCBCCHHHHHHHCCCCCCCHHHHHH
T ss_pred             CchhhhhcCHHHHHHHcCCCcCCCHHHHHH
Confidence            666677889999999999999999999873

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=99.83  E-value=2.9e-20  Score=122.83  Aligned_cols=103  Identities=16%  Similarity=0.139  Sum_probs=91.1

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR   80 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~   80 (111)
                      ++.++|      +|++.|+|+|++|+|++++.+++++. .. .+++||+++++.+|+.|+++.+.+.+|.+.++...+.+
T Consensus       203 ~~~~~~------~g~~~~~~i~v~Dva~a~~~~~~~~~-~~-~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~  274 (319)
T 4b8w_A          203 ALTVWG------TGNPRRQFIYSLDLAQLFIWVLREYN-EV-EPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTK  274 (319)
T ss_dssp             CEEEES------CSCCEECEEEHHHHHHHHHHHHHHCC-CS-SCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETTS
T ss_pred             ceEEeC------CCCeeEEEEeHHHHHHHHHHHHhccc-cC-CceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCCC
Confidence            456778      99999999999999999999999852 23 47799999999999999999999999999888888877


Q ss_pred             CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         81 EGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        81 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +.+.....+|++|+++.|||+|.++++++|+
T Consensus       275 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  305 (319)
T 4b8w_A          275 SDGQFKKTASNSKLRTYLPDFRFTPFKQAVK  305 (319)
T ss_dssp             CCCCSCCCBCCHHHHHHCTTCCCCCHHHHHH
T ss_pred             CcCcccccCCHHHHHHhcCCCCCCCHHHHHH
Confidence            7777777899999999999999999999873

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=99.83  E-value=7.1e-20  Score=122.97  Aligned_cols=109  Identities=58%  Similarity=1.031  Sum_probs=90.0

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE   81 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~   81 (111)
                      +.++|....+.+|++.|+|+|++|+|++++.+++++.... .+++||+++++.+|+.|+++.+.+.+|.+.+....|.++
T Consensus       223 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~-g~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~  301 (348)
T 1ek6_A          223 LNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQC-GCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARRE  301 (348)
T ss_dssp             EEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTTC-CEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCCT
T ss_pred             eEEeCCcccCCCCceEEeeEEHHHHHHHHHHHHhcccccC-CceEEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCCC
Confidence            4455544445578999999999999999999998751112 248999999999999999999999999887777777666


Q ss_pred             CccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         82 GDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        82 ~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .+.....+|++|+++.|||+|.++++++|+
T Consensus       302 ~~~~~~~~d~~k~~~~lG~~p~~~l~~~l~  331 (348)
T 1ek6_A          302 GDVAACYANPSLAQEELGWTAALGLDRMCE  331 (348)
T ss_dssp             TCCSEECBCCHHHHHTTCCCCCCCHHHHHH
T ss_pred             ccchhhccCHHHHHHhcCCCCCCCHHHHHH
Confidence            666677889999999999999999999873

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=99.83  E-value=9.1e-20  Score=121.67  Aligned_cols=109  Identities=42%  Similarity=0.725  Sum_probs=90.8

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE   81 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~   81 (111)
                      +.++|..+.+.+|++.|+|+|++|+|++++.+++++.... .+++||+++++.+|+.|+++.+.+.+|.+.+....|..+
T Consensus       206 ~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~~~~~~~~~-~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~  284 (330)
T 2c20_A          206 IMMFGDDYNTPDGTCIRDYIHVEDLVAAHFLGLKDLQNGG-ESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRA  284 (330)
T ss_dssp             EEEECSCCSSSSSSCEECEEEHHHHHHHHHHHHHHHHTTC-CCEEEECCCTTCBCHHHHHHHHHHHTTSCCCEEEECCCS
T ss_pred             eEEeCCccccCCCceeEeeEeHHHHHHHHHHHHhccccCC-CCCeEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCCC
Confidence            4455544555688999999999999999999998752112 368999999999999999999999999888777777666


Q ss_pred             CccchhccCHHHHHHhhCCCccc-chHhhhC
Q psy16546         82 GDIVSMYANTDLAQRELGWSARC-TVEKMCK  111 (111)
Q Consensus        82 ~~~~~~~~d~~k~~~~lg~~p~~-~~~~~l~  111 (111)
                      .+.....+|++|+++.|||+|.+ +++++|+
T Consensus       285 ~~~~~~~~d~~k~~~~lG~~p~~~~l~~~l~  315 (330)
T 2c20_A          285 GDPARLVASSQKAKEKLGWDPRYVNVKTIIE  315 (330)
T ss_dssp             SCCSEECBCCHHHHHHHCCCCSCCCHHHHHH
T ss_pred             CcccccccCHHHHHHHhCCCCccCCHHHHHH
Confidence            66667788999999999999998 9999873

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=99.82  E-value=1.3e-19  Score=123.55  Aligned_cols=108  Identities=40%  Similarity=0.707  Sum_probs=89.7

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccc----c---ceEEecCCCcccHHHHHHHHHHHhCCCccc
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLK----I---KFYNLGTGQGTSVLQLLRTFERVTGKPVPY   74 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~----~---~~yni~~~~~~s~~e~~~~i~~~~~~~~~~   74 (111)
                      +.++|.+..+++|++.|+|+||+|+|++++.+++++. .. .    +   ++||+++++.+|+.|+++.+.+.+|.+.++
T Consensus       254 ~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~-~~-~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~  331 (397)
T 1gy8_A          254 MPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVE-KL-GPNDKSKYFSVFNLGTSRGYSVREVIEVARKTTGHPIPV  331 (397)
T ss_dssp             EEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHH-TC-CTTTGGGSEEEEEESCSCCEEHHHHHHHHHHHHCCCCCE
T ss_pred             ceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhccc-cc-ccccccCCCcEEEeCCCCcccHHHHHHHHHHHhCCCCCe
Confidence            4455544455688999999999999999999998751 11 1    3   899999999999999999999999988777


Q ss_pred             eEccCCCCccchhccCHHHHHHhhCCCccc-chHhhhC
Q psy16546         75 IVEARREGDIVSMYANTDLAQRELGWSARC-TVEKMCK  111 (111)
Q Consensus        75 ~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~-~~~~~l~  111 (111)
                      ...+.++.+.....+|++|+++.|||+|.+ +++++|+
T Consensus       332 ~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~e~l~  369 (397)
T 1gy8_A          332 RECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIME  369 (397)
T ss_dssp             EEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHH
T ss_pred             eeCCCCCCcccccccCHHHHHHHhCCCCCcCCHHHHHH
Confidence            777766666667788999999999999999 9999873

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=99.81  E-value=1.3e-19  Score=121.84  Aligned_cols=102  Identities=17%  Similarity=0.189  Sum_probs=85.1

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCC-----ccceE
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKP-----VPYIV   76 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~-----~~~~~   76 (111)
                      +.++|      +|++.|+|+|++|+|++++.++++.. .. .+++||+++++.+|+.|+++.+++.+|.+     .+...
T Consensus       233 ~~~~g------~g~~~~~~i~v~Dva~a~~~~~~~~~-~~-~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~  304 (351)
T 3ruf_A          233 VYING------DGETSRDFCYIDNVIQMNILSALAKD-SA-KDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKY  304 (351)
T ss_dssp             CEEES------SSCCEECCEEHHHHHHHHHHHHTCCG-GG-CSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EE
T ss_pred             cEEeC------CCCeEEeeEEHHHHHHHHHHHHhhcc-cc-CCCEEEeCCCCcccHHHHHHHHHHHhCcccccccccccc
Confidence            45677      99999999999999999999998721 34 68999999999999999999999999973     34444


Q ss_pred             ccCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         77 EARREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        77 ~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .+.++.+.....+|++|+++.|||+|.++++++|+
T Consensus       305 ~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~  339 (351)
T 3ruf_A          305 REFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLR  339 (351)
T ss_dssp             ECCCTTCCSBCCBCCHHHHHHHCCCCCCCHHHHHH
T ss_pred             cCCCCCccceeeeCHHHHHHHhCCCCCCCHHHHHH
Confidence            55556666778899999999999999999999873

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=99.81  E-value=2.4e-19  Score=120.43  Aligned_cols=101  Identities=22%  Similarity=0.368  Sum_probs=86.4

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCcc-ceEccC
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP-YIVEAR   79 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~-~~~~~~   79 (111)
                      ++.++|      +|++.|+|+|++|+|++++.+++++   . .+++||+++++.+|+.|+++.+.+.+|.+.+ +...+.
T Consensus       227 ~~~~~~------~~~~~~~~i~v~Dva~a~~~~~~~~---~-~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~  296 (346)
T 4egb_A          227 KLPLYG------DGLNVRDWLHVTDHCSAIDVVLHKG---R-VGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTD  296 (346)
T ss_dssp             CCEEET------TSCCEECEEEHHHHHHHHHHHHHHC---C-TTCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEECC
T ss_pred             CceeeC------CCCeEEeeEEHHHHHHHHHHHHhcC---C-CCCEEEECCCCceeHHHHHHHHHHHhCCCcccccccCC
Confidence            356677      9999999999999999999999986   3 5789999999999999999999999998766 555566


Q ss_pred             CCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         80 REGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        80 ~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ++.....+.+|++|+++.|||+|.++++++|+
T Consensus       297 ~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~  328 (346)
T 4egb_A          297 RLGHDRRYAINAEKMKNEFDWEPKYTFEQGLQ  328 (346)
T ss_dssp             --CCCSCCCBCCHHHHHHHCCCCCCCHHHHHH
T ss_pred             CCCCcceeeccHHHHHHHcCCCCCCCHHHHHH
Confidence            66666677889999999999999999999873

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=99.80  E-value=1.5e-19  Score=119.88  Aligned_cols=98  Identities=22%  Similarity=0.290  Sum_probs=79.1

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhh-ccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccC------CCCccc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQ-GEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEAR------REGDIV   85 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~-~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~------~~~~~~   85 (111)
                      +|++.|+|+|++|+|++++.+++++. ... .+++||+++++.+|+.|+++.+.+.+|.+.++...|.      .+.+..
T Consensus       196 ~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~-~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  274 (312)
T 3ko8_A          196 DGTQRKSYLYVRDAVEATLAAWKKFEEMDA-PFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVK  274 (312)
T ss_dssp             ---CEECEEEHHHHHHHHHHHHHHHHHSCC-SEEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC----------CCCS
T ss_pred             CCCeEEeeEEHHHHHHHHHHHHHhccccCC-CCcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCccccccCCCCCcc
Confidence            99999999999999999999999821 123 6789999999999999999999999998877776554      244555


Q ss_pred             hhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         86 SMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        86 ~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ...+|++|+++.|||+|.++++++|+
T Consensus       275 ~~~~d~~k~~~~lG~~p~~~~~~~l~  300 (312)
T 3ko8_A          275 YMTLAVTKLMKLTGWRPTMTSAEAVK  300 (312)
T ss_dssp             EECBCCHHHHHHHCCCCSSCHHHHHH
T ss_pred             ccccCHHHHHHHhCCCCCCCHHHHHH
Confidence            67889999999999999999999873

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=99.80  E-value=3.8e-19  Score=118.00  Aligned_cols=92  Identities=27%  Similarity=0.406  Sum_probs=83.1

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCccchhccCHH
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTD   92 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~   92 (111)
                      +|++.|+|+|++|+|++++.+++++      +++||+++++.+|+.|+++.+.+.+|.+.++...|.++.+.....+|++
T Consensus       210 ~g~~~~~~i~v~Dva~a~~~~~~~~------~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~  283 (311)
T 2p5y_A          210 DEGCVRDYVYVGDVAEAHALALFSL------EGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSVLSPL  283 (311)
T ss_dssp             SCCCEECEEEHHHHHHHHHHHHHHC------CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECCCTTCCSBCCBCCH
T ss_pred             CCCeEEeeEEHHHHHHHHHHHHhCC------CCEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCCCccchhhccCCHH
Confidence            8899999999999999999999863      6899999999999999999999999988887777777667677889999


Q ss_pred             HHHHhhCCCcccchHhhhC
Q psy16546         93 LAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        93 k~~~~lg~~p~~~~~~~l~  111 (111)
                      |+++ |||+|.++++++|+
T Consensus       284 k~~~-lg~~p~~~~~~~l~  301 (311)
T 2p5y_A          284 KLMA-HGWRPKVGFQEGIR  301 (311)
T ss_dssp             HHHT-TTCCCSSCHHHHHH
T ss_pred             HHHH-CCCCCCCCHHHHHH
Confidence            9999 99999999999873

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=99.80  E-value=3e-19  Score=118.58  Aligned_cols=100  Identities=18%  Similarity=0.294  Sum_probs=89.3

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccC-C
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEAR-R   80 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~-~   80 (111)
                      +.++|      +|++.++|+|++|+|++++.+++++   . .+++||+++++.+|+.|+++.+++.+|.+.++...+. .
T Consensus       187 ~~~~g------~~~~~~~~v~v~Dva~a~~~~~~~~---~-~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~  256 (311)
T 3m2p_A          187 LTLHA------NSVAKREFLYAKDAAKSVIYALKQE---K-VSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNA  256 (311)
T ss_dssp             EEESS------BCCCCEEEEEHHHHHHHHHHHTTCT---T-CCEEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSSB
T ss_pred             eEEec------CCCeEEceEEHHHHHHHHHHHHhcC---C-CCCeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCCC
Confidence            45567      9999999999999999999999886   2 5899999999999999999999999999888888777 6


Q ss_pred             CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         81 EGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        81 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ........+|++|+++.|||+|.++++++|+
T Consensus       257 ~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~  287 (311)
T 3m2p_A          257 NEGIHSSYMDSSKAKELLDFSTDYNFATAVE  287 (311)
T ss_dssp             CCSCCCBCBCCHHHHHHSCCCCSCCHHHHHH
T ss_pred             CCCcCceecCHHHHHHHhCCCcccCHHHHHH
Confidence            6677778899999999999999999999873

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=99.80  E-value=1.8e-19  Score=119.82  Aligned_cols=102  Identities=22%  Similarity=0.411  Sum_probs=85.9

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhcc------ccccceEEecCCCcccHHHHHHHHHHHhCCCccce
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGE------HLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI   75 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~------~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~   75 (111)
                      +.++|      +|++.|+|+|++|+|++++.+++++...      . .+++||+++++.+|+.|+++.+.+.+|.+.++.
T Consensus       199 ~~~~~------~g~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~-~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~  271 (321)
T 1e6u_A          199 VVVWG------SGTPMREFLHVDDMAAASIHVMELAHEVWLENTQP-MLSHINVGTGVDCTIRELAQTIAKVVGYKGRVV  271 (321)
T ss_dssp             EEEES------CSCCEECEEEHHHHHHHHHHHHHSCHHHHHHTSBT-TBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEE
T ss_pred             eEEcC------CCCEEEEeEEHHHHHHHHHHHHhCccccccccccc-CCceEEeCCCCCccHHHHHHHHHHHhCCCCceE
Confidence            44567      9999999999999999999999875210      1 158999999999999999999999999887777


Q ss_pred             EccCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         76 VEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        76 ~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ..+.++.......+|++|+++ |||+|.++++++|+
T Consensus       272 ~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~l~  306 (321)
T 1e6u_A          272 FDASKPDGTPRKLLDVTRLHQ-LGWYHEISLEAGLA  306 (321)
T ss_dssp             EETTSCCCCSBCCBCCHHHHH-TTCCCCCCHHHHHH
T ss_pred             eCCCCCCCcccccCCHHHHHh-cCCccCCcHHHHHH
Confidence            776665555667889999999 99999999999873

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=99.79  E-value=5.2e-19  Score=118.80  Aligned_cols=99  Identities=23%  Similarity=0.336  Sum_probs=86.4

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE   81 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~   81 (111)
                      +.++|      +|++.++|+|++|+|++++.+++.+     .+++||+++++.+|+.|+++.+.+.+|.+.++...|...
T Consensus       226 ~~~~~------~~~~~~~~v~v~Dva~a~~~~~~~~-----~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~  294 (343)
T 2b69_A          226 LTVYG------SGSQTRAFQYVSDLVNGLVALMNSN-----VSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQ  294 (343)
T ss_dssp             EEEES------SSCCEEECEEHHHHHHHHHHHHTSS-----CCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCCT
T ss_pred             ceEcC------CCCeEEeeEeHHHHHHHHHHHHhcC-----CCCeEEecCCCCCcHHHHHHHHHHHhCCCCCceeCCCCC
Confidence            45567      8999999999999999999998865     578999999999999999999999999888777777655


Q ss_pred             CccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         82 GDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        82 ~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .+.....+|++|+++.|||+|.++++++|+
T Consensus       295 ~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~  324 (343)
T 2b69_A          295 DDPQKRKPDIKKAKLMLGWEPVVPLEEGLN  324 (343)
T ss_dssp             TCCCCCCBCCHHHHHHHCCCCCSCHHHHHH
T ss_pred             CCCceecCCHHHHHHHcCCCCCCCHHHHHH
Confidence            555667789999999999999999999873

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=99.78  E-value=4.9e-19  Score=117.55  Aligned_cols=94  Identities=19%  Similarity=0.392  Sum_probs=76.3

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccC---CCCccchhcc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEAR---REGDIVSMYA   89 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~   89 (111)
                      +|++.|+|+|++|+|++++.+++.   .. .+++||+++++.+|+.|+++.+++.+|.+.++...+.   .+.+.....+
T Consensus       197 ~g~~~~~~i~v~Dva~a~~~~~~~---~~-~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~  272 (313)
T 3ehe_A          197 NGEQNKSYIYISDCVDAMLFGLRG---DE-RVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLL  272 (313)
T ss_dssp             TSCCEECCEEHHHHHHHHHHHTTC---CS-SEEEEECCCSCCEEHHHHHHHHHHHTTCCCEEEEC------------CCB
T ss_pred             CCCeEEeEEEHHHHHHHHHHHhcc---CC-CCceEEECCCCCeeHHHHHHHHHHHhCCCCceEECCCccCCccccceecc
Confidence            999999999999999999999984   34 6799999999999999999999999998876666543   2344555778


Q ss_pred             CHHHHHHhhCCCcccchHhhhC
Q psy16546         90 NTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        90 d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      |++|+++ |||+|.++++++|+
T Consensus       273 d~~k~~~-lG~~p~~~~~e~l~  293 (313)
T 3ehe_A          273 SIEKLKR-LGWKPRYNSEEAVR  293 (313)
T ss_dssp             CCHHHHH-HTCCCSCCHHHHHH
T ss_pred             CHHHHHH-cCCCCCCCHHHHHH
Confidence            9999965 99999999999873

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=99.78  E-value=1.2e-18  Score=116.69  Aligned_cols=102  Identities=21%  Similarity=0.347  Sum_probs=87.0

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC--cccHHHHHHHHHHHhCCCccceEccC
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ--GTSVLQLLRTFERVTGKPVPYIVEAR   79 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~--~~s~~e~~~~i~~~~~~~~~~~~~~~   79 (111)
                      +.++|      +|++.|+|+|++|+|++++.++++.. .. .+++||++++.  ++|+.|+++.+.+.+|.+.++...|.
T Consensus       227 ~~~~g------~g~~~~~~i~v~Dva~a~~~~~~~~~-~~-~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~  298 (347)
T 1orr_A          227 FTISG------NGKQVRDVLHAEDMISLYFTALANVS-KI-RGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPV  298 (347)
T ss_dssp             EEEES------SSCCEEECEEHHHHHHHHHHHHHTHH-HH-TTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECC
T ss_pred             eEEec------CCcceEeeEEHHHHHHHHHHHHhccc-cC-CCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCCC
Confidence            55677      99999999999999999999998521 23 56799999886  49999999999999998887777776


Q ss_pred             CCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         80 REGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        80 ~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ++.+.....+|++|+++.|||+|.++++++|+
T Consensus       299 ~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~  330 (347)
T 1orr_A          299 RESDQRVFVADIKKITNAIDWSPKVSAKDGVQ  330 (347)
T ss_dssp             CSSCCSEECBCCHHHHHHHCCCCCSCHHHHHH
T ss_pred             CCCCcceeecCHHHHHHHHCCCccCCHHHHHH
Confidence            66666667889999999999999999999873

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=99.78  E-value=1e-18  Score=117.37  Aligned_cols=98  Identities=19%  Similarity=0.288  Sum_probs=86.3

Q ss_pred             eeeeCCCCCCCCCCcccee----eeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEc
Q psy16546          2 ITVFGADYGTEDGTGIRDY----IHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVE   77 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~----v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~   77 (111)
                      +.++|      +|++.|+|    +|++|+|++++.+++++  .. .+++||+++++.+|+.|+++.+.+.+|.+.+....
T Consensus       230 ~~~~g------~~~~~~~~~~~~i~v~Dva~ai~~~~~~~--~~-~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~  300 (347)
T 4id9_A          230 SHILA------RNENGRPFRMHITDTRDMVAGILLALDHP--EA-AGGTFNLGADEPADFAALLPKIAALTGLPIVTVDF  300 (347)
T ss_dssp             CEEEE------ECTTCCBCEECEEEHHHHHHHHHHHHHCG--GG-TTEEEEESCSSCEEHHHHHHHHHHHHCCCEEEEEC
T ss_pred             eEEeC------CCCcccCCccCcEeHHHHHHHHHHHhcCc--cc-CCCeEEECCCCcccHHHHHHHHHHHhCCCCceeeC
Confidence            56777      89999999    99999999999999986  34 58999999999999999999999999998777766


Q ss_pred             cCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         78 ARREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        78 ~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      |..+.   ...+|++|+++.|||+|.++++++|+
T Consensus       301 p~~~~---~~~~d~~k~~~~lG~~p~~~~~~~l~  331 (347)
T 4id9_A          301 PGDGV---YYHTSNERIRNTLGFEAEWTMDRMLE  331 (347)
T ss_dssp             SSCCC---BCCBCCHHHHHHHCCCCCCCHHHHHH
T ss_pred             CCccc---ccccCHHHHHHHhCCCCCCCHHHHHH
Confidence            66554   56789999999999999999999873

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=99.78  E-value=8e-19  Score=116.43  Aligned_cols=98  Identities=27%  Similarity=0.368  Sum_probs=88.3

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE   81 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~   81 (111)
                      +.++|      +|++.++|+|++|+|++++.+++++   . .+ +||+++++.+|+.|+++.+. .+|.+.++...|.++
T Consensus       198 ~~~~~------~~~~~~~~v~v~Dva~~~~~~~~~~---~-~g-~~~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~~~  265 (321)
T 3vps_A          198 LPVEG------DGEQRRDFTYITDVVDKLVALANRP---L-PS-VVNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPRP  265 (321)
T ss_dssp             EEEET------TSCCEECEEEHHHHHHHHHHGGGSC---C-CS-EEEESCSCCEEHHHHHHHHH-TTCTTCEEEEECCCT
T ss_pred             eEEeC------CCCceEceEEHHHHHHHHHHHHhcC---C-CC-eEEecCCCcccHHHHHHHHH-HhCCCCccccCCCCC
Confidence            46677      9999999999999999999999986   2 34 99999999999999999999 999998888888888


Q ss_pred             CccchhccCHHHHHHhhCCCc-ccchHhhhC
Q psy16546         82 GDIVSMYANTDLAQRELGWSA-RCTVEKMCK  111 (111)
Q Consensus        82 ~~~~~~~~d~~k~~~~lg~~p-~~~~~~~l~  111 (111)
                      .+.....+|++|+++.|||+| .++++++|+
T Consensus       266 ~~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~  296 (321)
T 3vps_A          266 NEITEFRADTALQTRQIGERSGGIGIEEGIR  296 (321)
T ss_dssp             TCCSBCCBCCHHHHHHHCCCSCCCCHHHHHH
T ss_pred             CCcceeeccHHHHHHHhCCCCCcCCHHHHHH
Confidence            887888899999999999999 889999873

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=99.77  E-value=4.9e-19  Score=119.73  Aligned_cols=93  Identities=17%  Similarity=0.200  Sum_probs=78.4

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC-CCccchhccCH
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR-EGDIVSMYANT   91 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~d~   91 (111)
                      +|++.|+|+|++|+|++++.+++++   . . ++||+++++.+|+.|+++.+.+.+| +.++...|.+ ........+|+
T Consensus       222 ~g~~~~~~i~v~Dva~ai~~~~~~~---~-~-g~~~i~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~~~~~~~~~~~~d~  295 (362)
T 3sxp_A          222 FGEQLRDFVYIEDVIQANVKAMKAQ---K-S-GVYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPYAFFQKHTQAHI  295 (362)
T ss_dssp             GGCCEEECEEHHHHHHHHHHHTTCS---S-C-EEEEESCSCEEEHHHHHHHHHHHHC-CCEEECCC-------CCCCBCC
T ss_pred             CCCeEEccEEHHHHHHHHHHHHhcC---C-C-CEEEeCCCCCccHHHHHHHHHHHcC-CCceEECCCCCcCcccceecCH
Confidence            8899999999999999999999875   2 3 4999999999999999999999999 7777777665 55666678899


Q ss_pred             HHHHHhhCCCcccchHhhhC
Q psy16546         92 DLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        92 ~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +|+++.|||+|.++++++|+
T Consensus       296 ~k~~~~lG~~p~~~l~e~l~  315 (362)
T 3sxp_A          296 EPTILDLDYTPLYDLESGIK  315 (362)
T ss_dssp             HHHHHHHCCCCCCCHHHHHH
T ss_pred             HHHHHHhCCCCCCCHHHHHH
Confidence            99999999999999999873

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=99.77  E-value=3.2e-18  Score=113.82  Aligned_cols=95  Identities=17%  Similarity=0.264  Sum_probs=82.6

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEcc--CCCCccchhccC
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEA--RREGDIVSMYAN   90 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~d   90 (111)
                      +|++.++|+|++|+|++++.+++++   . .+++||+++++.+|+.|+++.+.+.+|.+.++...|  .++.+.....+|
T Consensus       216 ~~~~~~~~v~v~Dva~a~~~~~~~~---~-~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~d  291 (321)
T 2pk3_A          216 NLEAVRDFTDVRDIVQAYWLLSQYG---K-TGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGS  291 (321)
T ss_dssp             CSSCEEEEEEHHHHHHHHHHHHHHC---C-TTCEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGGCCSSCCSBCCBC
T ss_pred             CCCcEEeeEEHHHHHHHHHHHHhCC---C-CCCeEEeCCCCCeeHHHHHHHHHHHhCCCCceeeccccCCCcccchhccC
Confidence            8899999999999999999999875   3 578999999999999999999999999887766666  344455567889


Q ss_pred             HHHHHHhhCCCcccchHhhhC
Q psy16546         91 TDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        91 ~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ++|+++.|||+|.++++++|+
T Consensus       292 ~~k~~~~lG~~p~~~~~e~l~  312 (321)
T 2pk3_A          292 NKRLKDSTGWKPRIPLEKSLF  312 (321)
T ss_dssp             CHHHHHHHCCCCCSCHHHHHH
T ss_pred             HHHHHHHcCCCcCCCHHHHHH
Confidence            999999999999999999873

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=99.76  E-value=1.1e-18  Score=118.69  Aligned_cols=94  Identities=28%  Similarity=0.418  Sum_probs=82.0

Q ss_pred             CCCccceeeeHHHHHHH-HHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCccc-hhccC
Q psy16546         13 DGTGIRDYIHVMDLAVG-HVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIV-SMYAN   90 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a-~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~d   90 (111)
                      +|++.++|+|++|+|++ ++.+++++   . .+ +||+++++.+|+.|+++.+.+.+|.+.++...|.++.+.. ...+|
T Consensus       253 ~g~~~~~~i~v~Dva~a~i~~~~~~~---~-~g-~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~d  327 (377)
T 2q1s_A          253 GGVATRDFIFVEDVANGLIACAADGT---P-GG-VYNIASGKETSIADLATKINEITGNNTELDRLPKRPWDNSGKRFGS  327 (377)
T ss_dssp             GGCCEECCEEHHHHHHHHHHHHHHCC---T-TE-EEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCCCGGGCC-CCCCC
T ss_pred             CCCeEEeeEEHHHHHHHHHHHHHhcC---C-CC-eEEecCCCceeHHHHHHHHHHHhCCCCCceeCCCCccccccccccC
Confidence            88999999999999999 99999875   2 34 9999999999999999999999998877766666555555 67789


Q ss_pred             HHHHHHhhCCCcccchHhhhC
Q psy16546         91 TDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        91 ~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ++|+++.|||+|.++++++|+
T Consensus       328 ~~k~~~~lG~~p~~~l~e~l~  348 (377)
T 2q1s_A          328 PEKARRELGFSADVSIDDGLR  348 (377)
T ss_dssp             CHHHHHHHCCCCCCCHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHH
Confidence            999999999999999999873

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=99.76  E-value=3.8e-18  Score=114.91  Aligned_cols=97  Identities=23%  Similarity=0.303  Sum_probs=81.4

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHh---CCCcc--ceEccCCCCccchh
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVT---GKPVP--YIVEARREGDIVSM   87 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~---~~~~~--~~~~~~~~~~~~~~   87 (111)
                      +|++.|+|+|++|+|++++.++.+.. .. .+++||+++++.+|+.|+++.+.+.+   |.+.+  ..+.+.++.+....
T Consensus       240 ~g~~~~~~i~v~Dva~a~~~~~~~~~-~~-~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~  317 (352)
T 1sb8_A          240 DGETSRDFCYIENTVQANLLAATAGL-DA-RNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHS  317 (352)
T ss_dssp             SSCCEECCEEHHHHHHHHHHHHTCCG-GG-CSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBC
T ss_pred             CCCceEeeEEHHHHHHHHHHHHhccc-cC-CCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCCceecCCCccchhhc
Confidence            89999999999999999999988621 23 57899999999999999999999999   87755  33445455555667


Q ss_pred             ccCHHHHHHhhCCCcccchHhhhC
Q psy16546         88 YANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        88 ~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .+|++|+++.|||+|.++++++|+
T Consensus       318 ~~d~~k~~~~lG~~p~~~~~e~l~  341 (352)
T 1sb8_A          318 LADISKAAKLLGYAPKYDVSAGVA  341 (352)
T ss_dssp             CBCCHHHHHHTCCCCCCCHHHHHH
T ss_pred             cCCHHHHHHHhCCCCCCCHHHHHH
Confidence            789999999999999999999873

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=99.75  E-value=9e-18  Score=112.23  Aligned_cols=100  Identities=23%  Similarity=0.381  Sum_probs=80.4

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCcc-ceEccCC
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP-YIVEARR   80 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~-~~~~~~~   80 (111)
                      +.++|      +|++.++|+|++|+|++++.++++.   . .+++||+++++.+|+.|+++.+.+.+|.+.+ +...+.+
T Consensus       205 ~~~~~------~~~~~~~~i~v~Dva~~~~~~~~~~---~-~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~  274 (336)
T 2hun_A          205 IPIYG------TGKNVRDWLYVEDHVRAIELVLLKG---E-SREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDR  274 (336)
T ss_dssp             EEEET------C---CEEEEEHHHHHHHHHHHHHHC---C-TTCEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEECCC
T ss_pred             ceEeC------CCCceeeeEEHHHHHHHHHHHHhCC---C-CCCEEEeCCCCcccHHHHHHHHHHHhCCCcccccccCCC
Confidence            45567      8999999999999999999999864   3 5789999999999999999999999997643 4444444


Q ss_pred             CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         81 EGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        81 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +.....+.+|++|+++.|||+|.++++++|+
T Consensus       275 ~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~  305 (336)
T 2hun_A          275 PGHDLRYSLDSWKITRDLKWRPKYTFDEGIK  305 (336)
T ss_dssp             TTCCCCCCBCCHHHHHHHCCCCSSCHHHHHH
T ss_pred             CCchhhhcCCHHHHHHHhCCCCCCCHHHHHH
Confidence            4444456789999999999999999999873

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=99.75  E-value=9.6e-19  Score=118.54  Aligned_cols=104  Identities=21%  Similarity=0.325  Sum_probs=82.0

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecC-CCcccHHHHHHHHHHHhCCCccceEccC
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGT-GQGTSVLQLLRTFERVTGKPVPYIVEAR   79 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~   79 (111)
                      ++.++|      +|++.|+|+|++|+|++++.+++++.... .+++||+++ ++.+|+.|+++.+.+.+|.+.++...|.
T Consensus       232 ~~~~~~------~g~~~~~~i~v~Dva~a~~~~~~~~~~~~-~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~  304 (372)
T 3slg_A          232 NISLVD------GGSQKRAFTYVDDGISALMKIIENSNGVA-TGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAK  304 (372)
T ss_dssp             CEEEGG------GGCCEEECEEHHHHHHHHHHHHHCGGGTT-TTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHH
T ss_pred             CcEEeC------CCceEEEEEEHHHHHHHHHHHHhcccCcC-CCceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccc
Confidence            356677      89999999999999999999999862124 689999999 4899999999999999987655433221


Q ss_pred             C---------------CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         80 R---------------EGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        80 ~---------------~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .               ..+.....+|++|+++.|||+|.++++++|+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~  351 (372)
T 3slg_A          305 RVKLVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDDALR  351 (372)
T ss_dssp             TCCEEEC-------------CCCCBCCHHHHHHHTCCCCCCHHHHHH
T ss_pred             cceeeeccccccccCCccccceeecCHHHHHHHcCCCCCCCHHHHHH
Confidence            1               1244456789999999999999999999873

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=99.75  E-value=1.2e-17  Score=111.81  Aligned_cols=100  Identities=20%  Similarity=0.315  Sum_probs=82.9

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCcc-ceEccCC
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP-YIVEARR   80 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~-~~~~~~~   80 (111)
                      +.++|      +|++.++|+|++|+|++++.+++++   . .+++||+++++.+|+.|+++.+.+.+|.+.+ +.+.+.+
T Consensus       205 ~~~~~------~~~~~~~~i~v~Dva~a~~~~~~~~---~-~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~  274 (337)
T 1r6d_A          205 LPLYG------DGANVREWVHTDDHCRGIALVLAGG---R-AGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADR  274 (337)
T ss_dssp             EEEET------TSCCEEEEEEHHHHHHHHHHHHHHC---C-TTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCC
T ss_pred             cEEeC------CCCeeEeeEeHHHHHHHHHHHHhCC---C-CCCEEEeCCCCCccHHHHHHHHHHHhCCCcccceecCCC
Confidence            45566      8999999999999999999999874   3 5789999999999999999999999998753 4444444


Q ss_pred             CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         81 EGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        81 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +.....+.+|++|+++.|||+|.++++++|+
T Consensus       275 ~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~  305 (337)
T 1r6d_A          275 KGHDLRYSLDGGKIERELGYRPQVSFADGLA  305 (337)
T ss_dssp             TTCCCBCCBCCHHHHHHHCCCCCSCHHHHHH
T ss_pred             CCCcceeecCHHHHHHHcCCCCCCCHHHHHH
Confidence            4444456689999999999999999999873

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.75  E-value=4.7e-18  Score=113.60  Aligned_cols=94  Identities=21%  Similarity=0.281  Sum_probs=78.7

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCcc--ceEcc--CCCCccchhc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP--YIVEA--RREGDIVSMY   88 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~--~~~~~--~~~~~~~~~~   88 (111)
                      +|++.|+|+|++|+|++++.+++++     .+++||+++++.+|+.|+++.+.+.+|.+.+  ....+  .++.+.....
T Consensus       225 ~g~~~~~~i~v~Dva~a~~~~~~~~-----~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~  299 (335)
T 1rpn_A          225 NVDAKRDWGFAGDYVEAMWLMLQQD-----KADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLL  299 (335)
T ss_dssp             CTTCEEECEEHHHHHHHHHHHHHSS-----SCCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCC
T ss_pred             CCcceeceEEHHHHHHHHHHHHhcC-----CCCEEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccCCCcchhhc
Confidence            8999999999999999999999876     4689999999999999999999999997643  12221  2344555567


Q ss_pred             cCHHHHHHhhCCCcccchHhhhC
Q psy16546         89 ANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        89 ~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +|++|+++.|||+|.++++++|+
T Consensus       300 ~d~~k~~~~lG~~p~~~l~e~l~  322 (335)
T 1rpn_A          300 GNPAKAQRVLGWKPRTSLDELIR  322 (335)
T ss_dssp             BCTHHHHHHHCCCCCSCHHHHHH
T ss_pred             CCHHHHHHhcCCCcCCCHHHHHH
Confidence            89999999999999999999873

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=99.74  E-value=8.5e-18  Score=114.47  Aligned_cols=98  Identities=15%  Similarity=0.269  Sum_probs=84.2

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE   81 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~   81 (111)
                      +.++|      +|++.++|+|++|+|++++.+++++     .+++||+++++.+|+.|+++.+.+.+|.+.++...|...
T Consensus       235 ~~~~g------~g~~~~~~i~v~Dva~ai~~~l~~~-----~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~  303 (379)
T 2c5a_A          235 FEMWG------DGLQTRSFTFIDECVEGVLRLTKSD-----FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE  303 (379)
T ss_dssp             EEEES------CSCCEECCEEHHHHHHHHHHHHHSS-----CCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCC
T ss_pred             eEEeC------CCCeeEEEEEHHHHHHHHHHHhhcc-----CCCeEEeCCCCccCHHHHHHHHHHHhCCCCceeeCCCCC
Confidence            55677      9999999999999999999999875     578999999999999999999999999887776666532


Q ss_pred             CccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         82 GDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        82 ~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                       ......+|++|+++.|||+|.++++++|+
T Consensus       304 -~~~~~~~d~~k~~~~lG~~p~~~l~e~l~  332 (379)
T 2c5a_A          304 -GVRGRNSDNNLIKEKLGWAPNMRLKEGLR  332 (379)
T ss_dssp             -CCSBCEECCHHHHHHHSCCCCCCHHHHHH
T ss_pred             -CcccccCCHHHHHHHhCCCCCCCHHHHHH
Confidence             33446689999999999999999999873

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=99.74  E-value=7.2e-18  Score=112.90  Aligned_cols=98  Identities=13%  Similarity=0.097  Sum_probs=77.0

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC-cccHHHHHHHHHHHhCCCccceEccCCC----------
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ-GTSVLQLLRTFERVTGKPVPYIVEARRE----------   81 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~-~~s~~e~~~~i~~~~~~~~~~~~~~~~~----------   81 (111)
                      +|++.|+|+|++|+|++++.+++++.... .+++||+++++ .+|+.|+++.+.+.+|.+......|...          
T Consensus       215 ~g~~~~~~i~v~Dva~a~~~~~~~~~~~~-~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  293 (345)
T 2bll_A          215 GGKQKRCFTDIRDGIEALYRIIENAGNRC-DGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSY  293 (345)
T ss_dssp             GSCCEEECEEHHHHHHHHHHHHHCGGGTT-TTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC-----
T ss_pred             CCCEEEEEEEHHHHHHHHHHHHhhccccC-CCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCccccccccccchhh
Confidence            88999999999999999999998752113 57899999986 8999999999999998764432222211          


Q ss_pred             -----CccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         82 -----GDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        82 -----~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                           .+.....+|++|++++|||+|.++++++|+
T Consensus       294 ~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~~~l~  328 (345)
T 2bll_A          294 YGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETID  328 (345)
T ss_dssp             -------CCCCCBCCHHHHHHHCCCCCCCHHHHHH
T ss_pred             ccccccchhhhcccHHHHHHhcCCCccccHHHHHH
Confidence                 122345679999999999999999999873

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=99.74  E-value=6.9e-18  Score=122.55  Aligned_cols=99  Identities=46%  Similarity=0.832  Sum_probs=78.2

Q ss_pred             CCCCccceeeeHHHHHHHHHHHHhhhhc----cccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCccchh
Q psy16546         12 EDGTGIRDYIHVMDLAVGHVAALNKLQG----EHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSM   87 (111)
Q Consensus        12 ~~g~~~r~~v~v~D~a~a~~~~~~~~~~----~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~   87 (111)
                      .+|++.|+||||+|+|++++.++++...    .. .+++||+++++.+|+.|+++.+++.+|.+.++...+.+..+....
T Consensus       240 ~~g~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~-~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~  318 (699)
T 1z45_A          240 RDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEG-LCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNL  318 (699)
T ss_dssp             CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTCC-EEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC---------CCCC
T ss_pred             CCCCeeEeeEEHHHHHHHHHHHHhhhhccccccC-CceEEEECCCCCCcHHHHHHHHHHHhCCCCCceecCCCCCccccc
Confidence            3789999999999999999999986311    12 357999999999999999999999999887766666555566667


Q ss_pred             ccCHHHHHHhhCCCcccchHhhhC
Q psy16546         88 YANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        88 ~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .+|++|+++.|||+|.++++++|+
T Consensus       319 ~~d~~ka~~~LG~~p~~~l~egl~  342 (699)
T 1z45_A          319 TAKPDRAKRELKWQTELQVEDSCK  342 (699)
T ss_dssp             CBCCHHHHHHTCCCCCCCHHHHHH
T ss_pred             cCCHHHHHHhcCCCCCCCHHHHHH
Confidence            889999999999999999999873

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.73  E-value=1.2e-17  Score=113.30  Aligned_cols=94  Identities=18%  Similarity=0.271  Sum_probs=78.0

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccce-----------------
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI-----------------   75 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~-----------------   75 (111)
                      +|++.++|+|++|+|++++.+++++     .+++||+++++.+|+.|+++.+.+.+|.+.++.                 
T Consensus       243 ~~~~~~~~i~v~Dva~a~~~~~~~~-----~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~  317 (375)
T 1t2a_A          243 NLDAKRDWGHAKDYVEAMWLMLQND-----EPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVH  317 (375)
T ss_dssp             CTTCEECCEEHHHHHHHHHHHHHSS-----SCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEE
T ss_pred             CCCceeeeEEHHHHHHHHHHHHhcC-----CCceEEEeCCCcccHHHHHHHHHHHhCCCcccccccccccccccccccce
Confidence            8899999999999999999999875     458999999999999999999999999764321                 


Q ss_pred             --Ecc--CCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         76 --VEA--RREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        76 --~~~--~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                        ..+  .++.+.....+|++|+++.|||+|.++++++|+
T Consensus       318 ~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~  357 (375)
T 1t2a_A          318 VTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVR  357 (375)
T ss_dssp             EEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCHHHHHH
T ss_pred             eecCcccCCcccchhhcCCHHHHHHhcCCCccCCHHHHHH
Confidence              111  133444456789999999999999999999873

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=99.73  E-value=2.5e-17  Score=110.58  Aligned_cols=94  Identities=24%  Similarity=0.365  Sum_probs=79.9

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCcc-ceEccCCCCccchhccCH
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP-YIVEARREGDIVSMYANT   91 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~d~   91 (111)
                      +|++.++|+|++|+|++++.+++++   . .+++||+++++.+|+.|+++.+.+.+|.+.+ +.+.+.++.....+.+|+
T Consensus       220 ~~~~~~~~i~v~Dva~~~~~~~~~~---~-~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~  295 (348)
T 1oc2_A          220 EGKNVRDWIHTNDHSTGVWAILTKG---R-MGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDA  295 (348)
T ss_dssp             TSCCEEECEEHHHHHHHHHHHHHHC---C-TTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCC
T ss_pred             CCCceEeeEEHHHHHHHHHHHhhCC---C-CCCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccCCCCCCcccccccCH
Confidence            8899999999999999999999864   3 5789999999999999999999999997753 444454454445567899


Q ss_pred             HHHHHhhCCCcccc-hHhhh
Q psy16546         92 DLAQRELGWSARCT-VEKMC  110 (111)
Q Consensus        92 ~k~~~~lg~~p~~~-~~~~l  110 (111)
                      +|+++.|||+|.++ ++++|
T Consensus       296 ~k~~~~lG~~p~~~~~~~~l  315 (348)
T 1oc2_A          296 SKLRDELGWTPQFTDFSEGL  315 (348)
T ss_dssp             HHHHHHHCCCCSCCCHHHHH
T ss_pred             HHHHHHcCCCCCCCcHHHHH
Confidence            99999999999988 99987

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=99.73  E-value=6e-18  Score=114.46  Aligned_cols=94  Identities=20%  Similarity=0.322  Sum_probs=76.9

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccce-----------------
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI-----------------   75 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~-----------------   75 (111)
                      +|++.|+|+|++|+|++++.+++++     .+++||+++++.+|+.|+++.+.+.+|.+.++.                 
T Consensus       219 ~~~~~~~~i~v~Dva~a~~~~~~~~-----~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~  293 (372)
T 1db3_A          219 NMDSLRDWGHAKDYVKMQWMMLQQE-----QPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHD  293 (372)
T ss_dssp             CTTCEECCEEHHHHHHHHHHTTSSS-----SCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSS
T ss_pred             CCCceeeeeEHHHHHHHHHHHHhcC-----CCceEEEcCCCceeHHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence            8999999999999999999999875     468999999999999999999999998654321                 


Q ss_pred             ------------Ecc--CCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         76 ------------VEA--RREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        76 ------------~~~--~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                                  ..+  .++.+...+.+|++|++++|||+|.++++++|+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~  343 (372)
T 1db3_A          294 APGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVS  343 (372)
T ss_dssp             CTTCCTTCEEEEECGGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHH
T ss_pred             ccccccccceeeccccccCCCchhhhccCHHHHHHHhCCccccCHHHHHH
Confidence                        111  133344456779999999999999999999873

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=99.72  E-value=1.9e-17  Score=111.57  Aligned_cols=100  Identities=25%  Similarity=0.338  Sum_probs=81.1

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCcc--------
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP--------   73 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~--------   73 (111)
                      +.++|      +|++.++|+|++|+|++++.++++.   . .+++||+++++.+|+.|+++.+.+.+|.+.+        
T Consensus       221 ~~~~~------~~~~~~~~i~v~Dva~a~~~~~~~~---~-~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~  290 (361)
T 1kew_A          221 LPIYG------KGDQIRDWLYVEDHARALHMVVTEG---K-AGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQ  290 (361)
T ss_dssp             EEEET------TSCCEEEEEEHHHHHHHHHHHHHHC---C-TTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGG
T ss_pred             ceEcC------CCceeEeeEEHHHHHHHHHHHHhCC---C-CCCEEEecCCCeeeHHHHHHHHHHHhCCcCccccccccc
Confidence            45667      8999999999999999999999874   3 5789999999999999999999999985432        


Q ss_pred             ceEccCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         74 YIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        74 ~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +...+.++.....+.+|++|+++.|||+|.++++++|+
T Consensus       291 ~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~  328 (361)
T 1kew_A          291 ITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIR  328 (361)
T ss_dssp             EEEECCCTTCCCBCCBCCHHHHHHHCCCCSCCHHHHHH
T ss_pred             eeecCCCCcccceeecCHHHHHHHhCCCCccCHHHHHH
Confidence            22333344444456789999999999999999999873

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=99.72  E-value=2.4e-17  Score=112.57  Aligned_cols=98  Identities=19%  Similarity=0.207  Sum_probs=79.6

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhcccccc--ceEEecCCCcccHHHHHHHHHHH---hCCCccceE
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKI--KFYNLGTGQGTSVLQLLRTFERV---TGKPVPYIV   76 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~--~~yni~~~~~~s~~e~~~~i~~~---~~~~~~~~~   76 (111)
                      +.++|      +|++.|+|+||+|+|++++.+++++  .. .+  ++||+++ +.+|+.|+++.+++.   +|.+.++..
T Consensus       263 ~~~~g------~g~~~~~~i~v~Dva~a~~~~l~~~--~~-~g~~~~yni~~-~~~s~~e~~~~i~~~~~~~g~~~~~~~  332 (404)
T 1i24_A          263 LTVYG------KGGQTRGYLDIRDTVQCVEIAIANP--AK-AGEFRVFNQFT-EQFSVNELASLVTKAGSKLGLDVKKMT  332 (404)
T ss_dssp             EEEET------TSCCEEEEEEHHHHHHHHHHHHHSC--CC-TTCEEEEEECS-EEEEHHHHHHHHHHHHHTTTCCCCEEE
T ss_pred             eEEeC------CCCceECcEEHHHHHHHHHHHHhCc--cc-CCCceEEEECC-CCCcHHHHHHHHHHHHHhhCCCccccc
Confidence            45667      9999999999999999999999875  22 34  6999998 899999999999998   787776666


Q ss_pred             ccCCCC--ccchhccCHHHHHHhhCCCcccchHhhh
Q psy16546         77 EARREG--DIVSMYANTDLAQRELGWSARCTVEKMC  110 (111)
Q Consensus        77 ~~~~~~--~~~~~~~d~~k~~~~lg~~p~~~~~~~l  110 (111)
                      .|....  ....+.+|++|++ +|||+|.+++++++
T Consensus       333 ~p~~~~~~~~~~~~~d~~k~~-~LG~~p~~~~~~~l  367 (404)
T 1i24_A          333 VPNPRVEAEEHYYNAKHTKLM-ELGLEPHYLSDSLL  367 (404)
T ss_dssp             ECCSSCSCSSCCCCBCCCHHH-HTTCCCCCCCHHHH
T ss_pred             cCcccCccccceEecCHHHHH-HcCCCcCcCHHHHH
Confidence            665433  2234567999998 59999999988876

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=99.72  E-value=4.6e-17  Score=106.75  Aligned_cols=95  Identities=17%  Similarity=0.172  Sum_probs=76.9

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEcc--CCCCcc------
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEA--RREGDI------   84 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~--~~~~~~------   84 (111)
                      .+++.++|+|++|+|++++.+++++   . .+++||+++++.+|+.|+++.+++.+|.+.+.....  ......      
T Consensus       175 ~~~~~~~~i~v~Dva~a~~~~~~~~---~-~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~  250 (286)
T 3ius_A          175 KPGQVFSRIHVEDIAQVLAASMARP---D-PGAVYNVCDDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYS  250 (286)
T ss_dssp             CTTCCBCEEEHHHHHHHHHHHHHSC---C-TTCEEEECCSCCBCHHHHHHHHHHHHTCCCCCEEEGGGSCCCHHHHHTTS
T ss_pred             CCCcccceEEHHHHHHHHHHHHhCC---C-CCCEEEEeCCCCccHHHHHHHHHHHcCCCCCcccchhhhccChhHHHhhc
Confidence            4468899999999999999999986   2 568999999999999999999999999876543321  111221      


Q ss_pred             chhccCHHHHHHhhCCCccc-chHhhhC
Q psy16546         85 VSMYANTDLAQRELGWSARC-TVEKMCK  111 (111)
Q Consensus        85 ~~~~~d~~k~~~~lg~~p~~-~~~~~l~  111 (111)
                      ....+|++|+++.|||+|.+ +++++|+
T Consensus       251 ~~~~~d~~k~~~~lG~~p~~p~~~e~l~  278 (286)
T 3ius_A          251 ENKRVRNDRIKEELGVRLKYPNYRVGLE  278 (286)
T ss_dssp             CCCEECCHHHHHTTCCCCSCSSHHHHHH
T ss_pred             CCceeehHHHHHHhCCCCCcCCHHHHHH
Confidence            34567999999999999999 7999873

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=99.72  E-value=2.9e-17  Score=107.89  Aligned_cols=95  Identities=14%  Similarity=-0.006  Sum_probs=80.1

Q ss_pred             CCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCccchhccCH
Q psy16546         12 EDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANT   91 (111)
Q Consensus        12 ~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~   91 (111)
                      .+|++.++|+|++|+|++++.+++++.... .+++||+++++.+|+.|+++.+.+.+|.+.++...+   .......+|+
T Consensus       176 ~~~~~~~~~i~v~Dva~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~---~~~~~~~~d~  251 (286)
T 3gpi_A          176 PARNAWTNRIHRDDGAAFIAYLIQQRSHAV-PERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATP---PVQGNKKLSN  251 (286)
T ss_dssp             CSSBCEECEEEHHHHHHHHHHHHHHHTTSC-CCSEEEECCSCCEEHHHHHHHHHHHTTCCCCCSCCC---CBCSSCEECC
T ss_pred             CCcCceeEEEEHHHHHHHHHHHHhhhccCC-CCceEEEeCCCCCCHHHHHHHHHHHcCCCCCCCCCc---ccCCCeEeeH
Confidence            478999999999999999999999842123 689999999999999999999999999876665444   3445577899


Q ss_pred             HHHHHhhCCCccc-chHhhhC
Q psy16546         92 DLAQRELGWSARC-TVEKMCK  111 (111)
Q Consensus        92 ~k~~~~lg~~p~~-~~~~~l~  111 (111)
                      +|++ .|||+|.+ +++++|+
T Consensus       252 ~k~~-~lG~~p~~~~l~e~l~  271 (286)
T 3gpi_A          252 ARLL-ASGYQLIYPDYVSGYG  271 (286)
T ss_dssp             HHHH-HTTCCCSSCSHHHHHH
T ss_pred             HHHH-HcCCCCcCCcHHHHHH
Confidence            9998 79999999 6999873

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=99.72  E-value=3e-17  Score=107.70  Aligned_cols=91  Identities=11%  Similarity=0.008  Sum_probs=78.4

Q ss_pred             CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEcc-----CCCCccchhcc
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEA-----RREGDIVSMYA   89 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~   89 (111)
                      ++.++|+|++|+|++++.+++++     .+++||+++++.+|+.|+++.+++.+|.+.++...+     ....+.....+
T Consensus       183 ~~~~~~i~v~Dva~~~~~~~~~~-----~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  257 (287)
T 3sc6_A          183 DQIGSPTYVADLNVMINKLIHTS-----LYGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIF  257 (287)
T ss_dssp             SCEECCEEHHHHHHHHHHHHTSC-----CCEEEECCCBSCEEHHHHHHHHHHHHTCCCEEEEECHHHHCCSSCCCSBCCB
T ss_pred             CcccCceEHHHHHHHHHHHHhCC-----CCCeEEEcCCCcccHHHHHHHHHHHcCCCcceeeeehhhcCcccCCCCcccc
Confidence            58899999999999999999986     578999999999999999999999999887766543     23444556778


Q ss_pred             CHHHHHHhhCCCcccchHhhhC
Q psy16546         90 NTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        90 d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      |++|++ .+||+|.++++++|+
T Consensus       258 d~~k~~-~lg~~p~~~~~~~l~  278 (287)
T 3sc6_A          258 QHNMLR-LNGFLQMPSWEEGLE  278 (287)
T ss_dssp             CCHHHH-HTTCCCCCBHHHHHH
T ss_pred             cHHHHH-hhCCCCCccHHHHHH
Confidence            999999 799999999999873

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=99.71  E-value=3.1e-17  Score=111.47  Aligned_cols=94  Identities=20%  Similarity=0.242  Sum_probs=78.7

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCcc--ceEcc--CCCCccchhc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP--YIVEA--RREGDIVSMY   88 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~--~~~~~--~~~~~~~~~~   88 (111)
                      +|++.++|+|++|+|++++.+++++     .+++||+++++.+|+.|+++.+.+.+|.+..  +...+  .++.+...+.
T Consensus       248 ~~~~~~~~v~v~Dva~a~~~~~~~~-----~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~  322 (381)
T 1n7h_A          248 NLQASRDWGFAGDYVEAMWLMLQQE-----KPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQ  322 (381)
T ss_dssp             CTTCEEECEEHHHHHHHHHHHHTSS-----SCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCC
T ss_pred             CCCceeeeEEHHHHHHHHHHHHhCC-----CCCeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcccCCcccccccc
Confidence            8899999999999999999999876     4689999999999999999999999997642  22222  2344555567


Q ss_pred             cCHHHHHHhhCCCcccchHhhhC
Q psy16546         89 ANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        89 ~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +|++|+++.|||+|.++++++|+
T Consensus       323 ~d~~k~~~~lG~~p~~~l~e~l~  345 (381)
T 1n7h_A          323 GDASKAKEVLGWKPQVGFEKLVK  345 (381)
T ss_dssp             BCCHHHHHHHCCCCCSCHHHHHH
T ss_pred             CCHHHHHHhcCCcccCCHHHHHH
Confidence            89999999999999999999873

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=99.70  E-value=6.4e-17  Score=108.17  Aligned_cols=94  Identities=17%  Similarity=0.341  Sum_probs=77.4

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccce-----------------
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI-----------------   75 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~-----------------   75 (111)
                      +|.+.|+|+|++|+|++++.+++++     .+++||+++++.+|+.|+++.+.+.+|.+.++.                 
T Consensus       214 ~~~~~~~~~~v~Dva~a~~~~~~~~-----~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~  288 (345)
T 2z1m_A          214 NLNAKRDWGYAPEYVEAMWLMMQQP-----EPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVI  288 (345)
T ss_dssp             CTTCEECCEEHHHHHHHHHHHHTSS-----SCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEE
T ss_pred             CCCceeeeEEHHHHHHHHHHHHhCC-----CCceEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence            8889999999999999999999875     458999999999999999999999999874422                 


Q ss_pred             --Ecc--CCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         76 --VEA--RREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        76 --~~~--~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                        ..+  .++.+.....+|++|+++.|||+|.++++++|+
T Consensus       289 ~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~  328 (345)
T 2z1m_A          289 VEVSEEFFRPAEVDILVGNPEKAMKKLGWKPRTTFDELVE  328 (345)
T ss_dssp             EEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCHHHHHH
T ss_pred             cccCcccCCCCCcceeecCHHHHHHHcCCcccCCHHHHHH
Confidence              111  123344456679999999999999999999873

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=99.70  E-value=5.6e-17  Score=109.32  Aligned_cols=100  Identities=18%  Similarity=0.340  Sum_probs=77.7

Q ss_pred             CCCCCccceeeeHHHHHHHHHHHHhhhh--ccccccceEEecCC--CcccHHHHHHHHHHHhCCCccceEccC-CCCccc
Q psy16546         11 TEDGTGIRDYIHVMDLAVGHVAALNKLQ--GEHLKIKFYNLGTG--QGTSVLQLLRTFERVTGKPVPYIVEAR-REGDIV   85 (111)
Q Consensus        11 ~~~g~~~r~~v~v~D~a~a~~~~~~~~~--~~~~~~~~yni~~~--~~~s~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~   85 (111)
                      +.++++.|+|+||+|+|++++.++++..  ... .+++||++++  +.+|+.|+++.+.+.+|.+.++...+. ++.+..
T Consensus       223 ~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~-~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~  301 (357)
T 1rkx_A          223 IRNPHAIRPWQHVLEPLSGYLLLAQKLYTDGAE-YAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAH  301 (357)
T ss_dssp             CSCTTCEECCEETHHHHHHHHHHHHHHHHTCGG-GCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCC
T ss_pred             ECCCCCeeccEeHHHHHHHHHHHHHhhhhcCCC-CCceEEECCCCCCcccHHHHHHHHHHHhCCCCccccCCCCCCcCcc
Confidence            3477889999999999999999998521  113 5789999974  689999999999999998766544332 234445


Q ss_pred             hhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         86 SMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        86 ~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ...+|++|+++.|||+|.++++++|+
T Consensus       302 ~~~~d~~k~~~~lG~~p~~~l~e~l~  327 (357)
T 1rkx_A          302 YLKLDCSKAKMQLGWHPRWNLNTTLE  327 (357)
T ss_dssp             CCCBCCHHHHHHHCCCCCCCHHHHHH
T ss_pred             cccCCHHHHHHHhCCCcCCcHHHHHH
Confidence            57789999999999999999999873

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=99.69  E-value=5.6e-17  Score=107.12  Aligned_cols=94  Identities=17%  Similarity=0.087  Sum_probs=74.0

Q ss_pred             CCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC-----Ccc--
Q psy16546         12 EDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE-----GDI--   84 (111)
Q Consensus        12 ~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~-----~~~--   84 (111)
                      .+|++.|+||||+|+|++++.+++++  .  ..++||+++++++|++|+++.+++.+|++.. ...|...     +..  
T Consensus       184 g~g~~~~~~ihv~Dva~a~~~~~~~~--~--~~g~yn~~~~~~~t~~e~~~~ia~~lgrp~~-~pvP~~~~~~~~g~~~~  258 (298)
T 4b4o_A          184 GSGHQFFPWIHIGDLAGILTHALEAN--H--VHGVLNGVAPSSATNAEFAQTFGAALGRRAF-IPLPSAVVQAVFGRQRA  258 (298)
T ss_dssp             TTSCSBCCEEEHHHHHHHHHHHHHCT--T--CCEEEEESCSCCCBHHHHHHHHHHHHTCCCC-CCBCHHHHHHHHCHHHH
T ss_pred             cccCceeecCcHHHHHHHHHHHHhCC--C--CCCeEEEECCCccCHHHHHHHHHHHhCcCCc-ccCCHHHHHHHhcchhH
Confidence            39999999999999999999999986  2  4679999999999999999999999997642 2233211     100  


Q ss_pred             ----chhccCHHHHHHhhCCCccc-chHhhhC
Q psy16546         85 ----VSMYANTDLAQRELGWSARC-TVEKMCK  111 (111)
Q Consensus        85 ----~~~~~d~~k~~~~lg~~p~~-~~~~~l~  111 (111)
                          ....++++|+++ +||+++| +++++|+
T Consensus       259 ~~~l~~~rv~~~kl~~-~Gf~f~yp~l~~al~  289 (298)
T 4b4o_A          259 IMLLEGQKVIPRRTLA-TGYQYSFPELGAALK  289 (298)
T ss_dssp             HHHHCCCCBCCHHHHH-TTCCCSCCSHHHHHH
T ss_pred             HHhhCCCEEcHHHHHH-CCCCCCCCCHHHHHH
Confidence                113457899986 9999998 6998873

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=99.66  E-value=6e-16  Score=101.72  Aligned_cols=91  Identities=12%  Similarity=-0.003  Sum_probs=76.6

Q ss_pred             CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC-----CCccchhcc
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR-----EGDIVSMYA   89 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~   89 (111)
                      ++.++|+|++|+|++++.+++++     .+++||+++++.+|+.|+++.+.+.+|.+.++...|..     ........+
T Consensus       189 ~~~~~~i~v~Dva~~~~~~~~~~-----~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  263 (292)
T 1vl0_A          189 DQVGTPTSTVDLARVVLKVIDEK-----NYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVL  263 (292)
T ss_dssp             SCEECCEEHHHHHHHHHHHHHHT-----CCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCB
T ss_pred             CeeeCCccHHHHHHHHHHHHhcC-----CCcEEEecCCCCccHHHHHHHHHHHhCCCCceeeccccccCcccCCCccccc
Confidence            57899999999999999999885     57899999999999999999999999987665554431     223345678


Q ss_pred             CHHHHHHhhCCCcccchHhhhC
Q psy16546         90 NTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        90 d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      |++|+++.|||+|. +++++|+
T Consensus       264 d~~k~~~~lG~~p~-~~~~~l~  284 (292)
T 1vl0_A          264 RNYMLELTTGDITR-EWKESLK  284 (292)
T ss_dssp             CCHHHHHTTCCCCC-BHHHHHH
T ss_pred             cHHHHHHHcCCCCC-CHHHHHH
Confidence            99999999999998 9999873

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=99.66  E-value=1.3e-16  Score=105.64  Aligned_cols=97  Identities=11%  Similarity=0.109  Sum_probs=73.9

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCcc---chhcc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDI---VSMYA   89 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~   89 (111)
                      +|++.|+|+|++|+|++++.+++++......+++||+++ +.+|+.|+++.+.+.++. .++.+.|......   ....+
T Consensus       206 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~ni~~-~~~s~~e~~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~  283 (312)
T 2yy7_A          206 SSETKMPMMYMDDAIDATINIMKAPVEKIKIHSSYNLAA-MSFTPTEIANEIKKHIPE-FTITYEPDFRQKIADSWPASI  283 (312)
T ss_dssp             CTTCCEEEEEHHHHHHHHHHHHHSCGGGCCCSSCEECCS-EEECHHHHHHHHHTTCTT-CEEEECCCTHHHHHTTSCSSB
T ss_pred             CCCceeeeeeHHHHHHHHHHHHhCcccccccCceEEeCC-CccCHHHHHHHHHHHCCC-CceEeccCccccccccccccC
Confidence            889999999999999999999987521110138999996 899999999999999983 3333434311111   12457


Q ss_pred             CHHHHHHhhCCCcccchHhhhC
Q psy16546         90 NTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        90 d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      |++|+++.|||+|.++++++|+
T Consensus       284 d~~k~~~~lG~~p~~~l~~~l~  305 (312)
T 2yy7_A          284 DDSQAREDWDWKHTFDLESMTK  305 (312)
T ss_dssp             CCHHHHHHHCCCCCCCHHHHHH
T ss_pred             CHHHHHHHcCCCCCCCHHHHHH
Confidence            9999999999999999999873

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=99.66  E-value=1.8e-16  Score=104.75  Aligned_cols=92  Identities=18%  Similarity=0.094  Sum_probs=62.2

Q ss_pred             CCCc-cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC----Cccchh
Q psy16546         13 DGTG-IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE----GDIVSM   87 (111)
Q Consensus        13 ~g~~-~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~----~~~~~~   87 (111)
                      +|++ .|+|+|++|+|++++.+++++     .+++||+++++.+|+.|+++.+.+.+|.+ ++...+.+.    ......
T Consensus       203 ~g~~~~~~~i~v~Dva~~~~~~~~~~-----~~~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~  276 (310)
T 1eq2_A          203 GSENFKRDFVYVGDVADVNLWFLENG-----VSGIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFT  276 (310)
T ss_dssp             -----CBCEEEHHHHHHHHHHHHHHC-----CCEEEEESCSCCBCHHHHHHHC----------------------CCCSC
T ss_pred             CCCcceEccEEHHHHHHHHHHHHhcC-----CCCeEEEeCCCccCHHHHHHHHHHHcCCC-CceeCCCChhhhccccccc
Confidence            8889 999999999999999999986     47899999999999999999999999876 333332221    112235


Q ss_pred             ccCHHHHHHhhCC-CcccchHhhhC
Q psy16546         88 YANTDLAQRELGW-SARCTVEKMCK  111 (111)
Q Consensus        88 ~~d~~k~~~~lg~-~p~~~~~~~l~  111 (111)
                      .+|++|+++ +|| .|.++++++|+
T Consensus       277 ~~~~~~~~~-lG~~~~~~~l~~~l~  300 (310)
T 1eq2_A          277 QADLTNLRA-AGYDKPFKTVAEGVT  300 (310)
T ss_dssp             CBCCHHHHH-TTCCCCCCCHHHHHH
T ss_pred             ccchHHHHh-cCCCCCCCCHHHHHH
Confidence            679999987 999 78889999873

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=99.65  E-value=8.7e-16  Score=103.58  Aligned_cols=92  Identities=18%  Similarity=0.094  Sum_probs=75.4

Q ss_pred             CCCc-cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC----Cccchh
Q psy16546         13 DGTG-IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE----GDIVSM   87 (111)
Q Consensus        13 ~g~~-~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~----~~~~~~   87 (111)
                      +|++ .++|+|++|+|++++.+++++     .+++||+++++.+|+.|+++.+.+.+|.+ ++...+.+.    ......
T Consensus       250 ~~~~~~~~~i~v~Dva~ai~~~~~~~-----~~~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~  323 (357)
T 2x6t_A          250 GSENFKRDFVYVGDVADVNLWFLENG-----VSGIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFT  323 (357)
T ss_dssp             TGGGCEECEEEHHHHHHHHHHHHHHC-----CCEEEEESCSCCEEHHHHHHHHHHHHTCC-CCEEECCCGGGTTSCCSBC
T ss_pred             CCCcceEccEEHHHHHHHHHHHHhcC-----CCCeEEecCCCcccHHHHHHHHHHHcCCC-CceecCCCccccccccccc
Confidence            8888 999999999999999999986     47899999999999999999999999987 444433322    112235


Q ss_pred             ccCHHHHHHhhCC-CcccchHhhhC
Q psy16546         88 YANTDLAQRELGW-SARCTVEKMCK  111 (111)
Q Consensus        88 ~~d~~k~~~~lg~-~p~~~~~~~l~  111 (111)
                      .+|++|+++ ||| .|.++++++|+
T Consensus       324 ~~~~~k~~~-lG~~~~~~~l~e~l~  347 (357)
T 2x6t_A          324 QADLTNLRA-AGYDKPFKTVAEGVT  347 (357)
T ss_dssp             CCCCHHHHH-TTCCCCCCCHHHHHH
T ss_pred             ccCHHHHHH-cCCCCCCCCHHHHHH
Confidence            679999987 999 78889999873

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=99.62  E-value=7.7e-16  Score=111.38  Aligned_cols=103  Identities=14%  Similarity=0.106  Sum_probs=79.4

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC-cccHHHHHHHHHHHhCCCccceEccCC
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ-GTSVLQLLRTFERVTGKPVPYIVEARR   80 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~-~~s~~e~~~~i~~~~~~~~~~~~~~~~   80 (111)
                      +.++|      +|++.|+|+|++|+|++++.+++++.... .+++||+++++ .+|+.|+++.+.+.+|.+......|..
T Consensus       525 ~~~~g------~g~~~~~~i~v~Dva~ai~~~l~~~~~~~-~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~  597 (660)
T 1z7e_A          525 IKLID------GGKQKRCFTDIRDGIEALYRIIENAGNRC-DGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPF  597 (660)
T ss_dssp             EEEEG------GGCCEEECEEHHHHHHHHHHHHHCGGGTT-TTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCC
T ss_pred             cEEeC------CCCeEEEEEEHHHHHHHHHHHHhCccccC-CCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCcc
Confidence            45566      88999999999999999999998752123 57899999886 899999999999999854322222211


Q ss_pred             ---------------CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         81 ---------------EGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        81 ---------------~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                                     ..+.....+|++|+++.|||+|.++++++|+
T Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~egl~  643 (660)
T 1z7e_A          598 AGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETID  643 (660)
T ss_dssp             CCEEEECTHHHHCTTCCCCSCCCBCCHHHHHHHCCCCCCCHHHHHH
T ss_pred             ccccchhccccccccccchhhcccCHHHHHHhcCCCccCcHHHHHH
Confidence                           1123346679999999999999999999873

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=99.62  E-value=9.1e-16  Score=101.05  Aligned_cols=95  Identities=15%  Similarity=-0.039  Sum_probs=73.9

Q ss_pred             CccceeeeHHHHHHHHHHHHhhhhcccc-ccceEEecCCCcccHHHHHHHHHHHhCCC------ccceEccC-----CCC
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNKLQGEHL-KIKFYNLGTGQGTSVLQLLRTFERVTGKP------VPYIVEAR-----REG   82 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~-~~~~yni~~~~~~s~~e~~~~i~~~~~~~------~~~~~~~~-----~~~   82 (111)
                      ++.++|+|++|+|++++.+++++. ... .+++||+++++.+|+.|+++.+.+.+|.+      ..+...+.     ...
T Consensus       181 ~~~~~~i~v~Dva~~~~~~~~~~~-~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  259 (299)
T 1n2s_A          181 DQYGAPTGAELLADCTAHAIRVAL-NKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPAS  259 (299)
T ss_dssp             SCEECCEEHHHHHHHHHHHHHHHH-HCGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSC
T ss_pred             CcccCCeeHHHHHHHHHHHHHHhc-cccccCceEEEeCCCCCCHHHHHHHHHHHhCCCccccccccccccccccccCcCC
Confidence            478999999999999999998751 010 27899999999999999999999999865      23333322     122


Q ss_pred             ccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         83 DIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        83 ~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ......+|++|+++.|||+|. +++++|+
T Consensus       260 ~~~~~~~d~~k~~~~lG~~p~-~~~~~l~  287 (299)
T 1n2s_A          260 RPGNSRLNTEKFQRNFDLILP-QWELGVK  287 (299)
T ss_dssp             CCSBCCBCCHHHHHHHTCCCC-BHHHHHH
T ss_pred             CCCceeeeHHHHHHhcCCCCC-CHHHHHH
Confidence            334567899999999999998 8999873

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=99.61  E-value=5.4e-15  Score=96.17  Aligned_cols=89  Identities=12%  Similarity=0.007  Sum_probs=72.9

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEcc----CCCCccchhccCHH
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEA----RREGDIVSMYANTD   92 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~d~~   92 (111)
                      .++|+|++|+|++++.+++++     .+++||+++ +.+|+.|+++.+.+.+|.+.+....+    ..+.......+|++
T Consensus       180 ~~~~~~~~dva~~i~~~~~~~-----~~g~~~i~~-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~  253 (273)
T 2ggs_A          180 YYSPISARKLASAILELLELR-----KTGIIHVAG-ERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSS  253 (273)
T ss_dssp             EECCCBHHHHHHHHHHHHHHT-----CCEEEECCC-CCEEHHHHHHHHHHHTTCCSCEEEESSCTTCCSCCCSBCCBCCH
T ss_pred             CCCceEHHHHHHHHHHHHhcC-----cCCeEEECC-CcccHHHHHHHHHHHhCCChhhcccccccccccCCCcccccCHH
Confidence            789999999999999999886     456999998 99999999999999999876543211    11223344678999


Q ss_pred             HHHHhhCCCc-ccchHhhhC
Q psy16546         93 LAQRELGWSA-RCTVEKMCK  111 (111)
Q Consensus        93 k~~~~lg~~p-~~~~~~~l~  111 (111)
                      |+++.|||+| .++++++++
T Consensus       254 k~~~~lG~~p~~~~l~~~~~  273 (273)
T 2ggs_A          254 RARKILSTDFYTLDLDGMVV  273 (273)
T ss_dssp             HHHHHCSSCCCSCCGGGCCC
T ss_pred             HHHHHhCCCCCCcccccccC
Confidence            9999999999 689999874

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=99.60  E-value=9.7e-15  Score=96.82  Aligned_cols=96  Identities=10%  Similarity=-0.040  Sum_probs=75.8

Q ss_pred             CCccceeeeHHHHHHHHHHHHhhhh-ccccccceEEecCCCcccHHHHHHHHHHHhCCCcc-ceEccC----CCCccchh
Q psy16546         14 GTGIRDYIHVMDLAVGHVAALNKLQ-GEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP-YIVEAR----REGDIVSM   87 (111)
Q Consensus        14 g~~~r~~v~v~D~a~a~~~~~~~~~-~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~-~~~~~~----~~~~~~~~   87 (111)
                      |++.++|+|++|+|++++.++++.. ... .+++||+++++.+|+.|+++.+.+.+|.+.+ +...+.    ........
T Consensus       189 ~~~~~~~i~v~Dva~a~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
T 2ydy_A          189 HWQQRFPTHVKDVATVCRQLAEKRMLDPS-IKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNA  267 (315)
T ss_dssp             CSSBBCCEEHHHHHHHHHHHHHHHHTCTT-CCEEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSCCCSSSCCCSBC
T ss_pred             cCceECcEEHHHHHHHHHHHHHhhccccC-CCCeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccccccccCCCccc
Confidence            4678999999999999999998631 013 5789999999999999999999999998754 333332    12233456


Q ss_pred             ccCHHHHHHhhCCCcccchHhhhC
Q psy16546         88 YANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        88 ~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .+|++|+++. ||+|.++++++|+
T Consensus       268 ~~d~~k~~~~-G~~p~~~~~~~l~  290 (315)
T 2ydy_A          268 QLDCSKLETL-GIGQRTPFRIGIK  290 (315)
T ss_dssp             CBCCHHHHHT-TCCCCCCHHHHHH
T ss_pred             ccchHHHHhc-CCCCCCCHHHHHH
Confidence            7899999997 9999999999873

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=99.58  E-value=7.5e-16  Score=103.05  Aligned_cols=90  Identities=16%  Similarity=0.269  Sum_probs=75.4

Q ss_pred             CCCccceeeeHHHHHH-HHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCccchhccCH
Q psy16546         13 DGTGIRDYIHVMDLAV-GHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANT   91 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~-a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~   91 (111)
                      ++. .++|+|++|+|+ +++.+++++     .+++||+++++.+|+.|+++.+.+.+|.+ ++...|.++ +.....+|+
T Consensus       212 ~~~-~~~~i~~~Dva~~a~~~~~~~~-----~g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~-~~~~~~~d~  283 (330)
T 2pzm_A          212 SDT-VRDFLDMSDFLAIADLSLQEGR-----PTGVFNVSTGEGHSIKEVFDVVLDYVGAT-LAEPVPVVA-PGADDVPSV  283 (330)
T ss_dssp             ESC-EECEEEHHHHHHHHHHHTSTTC-----CCEEEEESCSCCEEHHHHHHHHHHHHTCC-CSSCCCEEC-CCTTSCSEE
T ss_pred             CCC-EecceeHHHHHHHHHHHHhhcC-----CCCEEEeCCCCCCCHHHHHHHHHHHhCCC-CceeCCCCc-chhhccCCH
Confidence            666 899999999999 999998874     37899999999999999999999999987 555555444 445567788


Q ss_pred             HHH-----HHhhCCCcccchHhhhC
Q psy16546         92 DLA-----QRELGWSARCTVEKMCK  111 (111)
Q Consensus        92 ~k~-----~~~lg~~p~~~~~~~l~  111 (111)
                      +|+     ++ |||+|.++++++|+
T Consensus       284 ~k~~~~~l~~-lG~~p~~~~~~~l~  307 (330)
T 2pzm_A          284 VLDPSKTETE-FGWKAKVDFKDTIT  307 (330)
T ss_dssp             CBCCHHHHHH-HCCCCCCCHHHHHH
T ss_pred             HHHhhchHHH-cCCcccCCHHHHHH
Confidence            888     88 99999999999873

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=99.58  E-value=6e-15  Score=99.40  Aligned_cols=95  Identities=11%  Similarity=0.025  Sum_probs=72.8

Q ss_pred             CCCcc---ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccce--EccCC-------
Q psy16546         13 DGTGI---RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI--VEARR-------   80 (111)
Q Consensus        13 ~g~~~---r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~--~~~~~-------   80 (111)
                      +|++.   .+++|++|+|++++.+++++  .. .+++||+++++.+|+.|+++.+++.+|.+....  ..|..       
T Consensus       215 ~~~~~~~~~~~~~v~Dva~a~~~~~~~~--~~-~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~  291 (364)
T 2v6g_A          215 CKAAWDGYSDCSDADLIAEHHIWAAVDP--YA-KNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQDLMKG  291 (364)
T ss_dssp             CHHHHHSCBCCEEHHHHHHHHHHHHHCG--GG-TTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCCCHHHHTTT
T ss_pred             CcccccccCCCCcHHHHHHHHHHHHhCC--CC-CCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCccHHHHHhh
Confidence            77544   57788899999999999875  33 577999999999999999999999999765432  22211       


Q ss_pred             ---------------CC---cc-----------ch-hccCHHHHHHhhCCCcccchHhhhC
Q psy16546         81 ---------------EG---DI-----------VS-MYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        81 ---------------~~---~~-----------~~-~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                                     +.   ..           .. +.+|++|+++ |||+|.++++++++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~e~l~  351 (364)
T 2v6g_A          292 KEPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKE-HGFLGFRNSKNAFI  351 (364)
T ss_dssp             CHHHHHHHHHHTTCCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHH-TTCCCCCCHHHHHH
T ss_pred             hHHHHHHHHHHhCCCccccccccccchhhhccccchhhcchHHHHh-cCCCCCCCHHHHHH
Confidence                           11   11           22 4689999998 99999999999873

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=99.58  E-value=3.7e-15  Score=99.79  Aligned_cols=90  Identities=19%  Similarity=0.220  Sum_probs=74.7

Q ss_pred             CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCcc-----chhc
Q psy16546         14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDI-----VSMY   88 (111)
Q Consensus        14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~   88 (111)
                      +++.++|+|++|+|++++.+++++     .+++||+++++.+|+.|+++.+.+.+|.+ ++...|.++ +.     ....
T Consensus       215 ~~~~~~~i~v~Dva~ai~~~~~~~-----~g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~-~~~~~~~~~~~  287 (333)
T 2q1w_A          215 TKARRDFVFVKDLARATVRAVDGV-----GHGAYHFSSGTDVAIKELYDAVVEAMALP-SYPEPEIRE-LGPDDAPSILL  287 (333)
T ss_dssp             EECEECEEEHHHHHHHHHHHHTTC-----CCEEEECSCSCCEEHHHHHHHHHHHTTCS-SCCCCEEEE-CCTTSCCCCCB
T ss_pred             CCceEeeEEHHHHHHHHHHHHhcC-----CCCEEEeCCCCCccHHHHHHHHHHHhCCC-CceeCCCCC-ccccccccccc
Confidence            467889999999999999999875     47899999999999999999999999987 444444322 22     3467


Q ss_pred             cCHHHHHHhhCCCcccchHhhhC
Q psy16546         89 ANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        89 ~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +|++|+++. ||+|.++++++|+
T Consensus       288 ~d~~k~~~~-G~~p~~~~~~~l~  309 (333)
T 2q1w_A          288 DPSRTIQDF-GKIEFTPLKETVA  309 (333)
T ss_dssp             CCHHHHHHH-CCCCCCCHHHHHH
T ss_pred             CCHHHHHhc-CCCcCCCHHHHHH
Confidence            899999998 9999999999873

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=99.57  E-value=5e-15  Score=98.22  Aligned_cols=97  Identities=9%  Similarity=0.020  Sum_probs=72.6

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCC---ccchhcc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREG---DIVSMYA   89 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~   89 (111)
                      ++++.++|+|++|+|++++.+++++......+++||+++ ..+|+.|+++.+.+.++. .++.+.|....   ......+
T Consensus       200 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~g~~~~i~~-~~~s~~e~~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~  277 (317)
T 3ajr_A          200 APNRALPMMYMPDALKALVDLYEADRDKLVLRNGYNVTA-YTFTPSELYSKIKERIPE-FEIEYKEDFRDKIAATWPESL  277 (317)
T ss_dssp             CTTCCEEEEEHHHHHHHHHHHHHCCGGGCSSCSCEECCS-EEECHHHHHHHHHTTCCS-CCEEECCCHHHHHHTTSCSCB
T ss_pred             CccceeeeeEHHHHHHHHHHHHhCCccccccCceEecCC-ccccHHHHHHHHHHHCCc-cccccccccchhhcccccccc
Confidence            788999999999999999999987521110248999995 689999999999999873 23333332110   1112357


Q ss_pred             CHHHHHHhhCCCcccchHhhhC
Q psy16546         90 NTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        90 d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      |++|+++.|||+|.++++++|+
T Consensus       278 d~~k~~~~lG~~p~~~~~~~l~  299 (317)
T 3ajr_A          278 DSSEASNEWGFSIEYDLDRTID  299 (317)
T ss_dssp             CCHHHHHHHCCCCCCCHHHHHH
T ss_pred             CHHHHHHHcCCCCCCCHHHHHH
Confidence            9999999999999999999873

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=99.50  E-value=5.2e-14  Score=94.09  Aligned_cols=91  Identities=21%  Similarity=0.277  Sum_probs=73.4

Q ss_pred             CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC------------
Q psy16546         14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE------------   81 (111)
Q Consensus        14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~------------   81 (111)
                      |++.++|+|++|+|++++.+++++   . .+++||+++++ +|+.|+++.+.+.+|.+.++ ..|...            
T Consensus       210 ~~~~~~~i~v~Dva~~~~~~~~~~---~-~g~~~~v~~~~-~s~~e~~~~i~~~~g~~~~~-~~p~~~~~~~~~~~~~~~  283 (342)
T 2x4g_A          210 VAGQRNVIDAAEAGRGLLMALERG---R-IGERYLLTGHN-LEMADLTRRIAELLGQPAPQ-PMSMAMARALATLGRLRY  283 (342)
T ss_dssp             ECCEEEEEEHHHHHHHHHHHHHHS---C-TTCEEEECCEE-EEHHHHHHHHHHHHTCCCCE-EECHHHHHHHHHHHHC--
T ss_pred             cCCCcceeeHHHHHHHHHHHHhCC---C-CCceEEEcCCc-ccHHHHHHHHHHHhCCCCCC-cCCHHHHHHHHHHHHHHH
Confidence            457889999999999999999885   2 37899999998 99999999999999987665 444210            


Q ss_pred             ---C-------c-----cchhccCHHHHHHhhCC-CcccchHhhhC
Q psy16546         82 ---G-------D-----IVSMYANTDLAQRELGW-SARCTVEKMCK  111 (111)
Q Consensus        82 ---~-------~-----~~~~~~d~~k~~~~lg~-~p~~~~~~~l~  111 (111)
                         +       +     .....+|++|+++.||| +| ++++++|+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~~p-~~~~~~l~  328 (342)
T 2x4g_A          284 RVSGQLPLLDETAIEVMAGGQFLDGRKAREELGFFST-TALDDTLL  328 (342)
T ss_dssp             --------------CCTTCCCCBCCHHHHHHHCCCCC-SCHHHHHH
T ss_pred             HhhCCCCCCCHHHHHHHhcCcccChHHHHHhCCCCCC-CCHHHHHH
Confidence               0       1     12356799999999999 99 89999873

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=99.48  E-value=7.1e-14  Score=91.40  Aligned_cols=94  Identities=18%  Similarity=0.268  Sum_probs=75.4

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC--------Ccc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE--------GDI   84 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~--------~~~   84 (111)
                      +|++.++|+|++|+|++++.+++++  .. .+++||+++++.+|+.|+++.+.+.+|.+.++...|...        +..
T Consensus       161 ~~~~~~~~i~~~Dva~~~~~~~~~~--~~-~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~  237 (286)
T 2zcu_A          161 AGDGKIASATRADYAAAAARVISEA--GH-EGKVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLP  237 (286)
T ss_dssp             CTTCCBCCBCHHHHHHHHHHHHHSS--SC-TTCEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHTTSSCC
T ss_pred             CCCCccccccHHHHHHHHHHHhcCC--CC-CCceEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHHHcCCC
Confidence            7788999999999999999999875  34 578999999999999999999999999887666555321        100


Q ss_pred             ----------------chhccCHHHHHHhhCCCcccchHhhh
Q psy16546         85 ----------------VSMYANTDLAQRELGWSARCTVEKMC  110 (111)
Q Consensus        85 ----------------~~~~~d~~k~~~~lg~~p~~~~~~~l  110 (111)
                                      .....|++|+++.||| |.++++++|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~-~~~~~~e~l  278 (286)
T 2zcu_A          238 DGLADMLADSDVGASKGGLFDDSKTLSKLIGH-PTTTLAESV  278 (286)
T ss_dssp             HHHHHHHHHHHHHHHTTTTCCCCCHHHHHHTS-CCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCccCchHHHHHhCc-CCCCHHHHH
Confidence                            0144688999999997 556999987

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=99.47  E-value=4.7e-14  Score=99.66  Aligned_cols=95  Identities=17%  Similarity=0.108  Sum_probs=67.5

Q ss_pred             CCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC-----CCcc-
Q psy16546         11 TEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR-----EGDI-   84 (111)
Q Consensus        11 ~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~-----~~~~-   84 (111)
                      +.+|++.++|+|++|+|++++.+++++  .  .+++||+++++.+|+.|+++.+++.+|.+. ....|..     .++. 
T Consensus       330 ~g~g~~~~~~i~v~Dva~ai~~~l~~~--~--~~g~~ni~~~~~~s~~el~~~i~~~~g~~~-~~~~p~~~~~~~~g~~~  404 (516)
T 3oh8_A          330 FGDGTSWFSWIAIDDLTDIYYRAIVDA--Q--ISGPINAVAPNPVSNADMTKILATSMHRPA-FIQIPSLGPKILLGSQG  404 (516)
T ss_dssp             CTTSCCEECEEEHHHHHHHHHHHHHCT--T--CCEEEEESCSCCEEHHHHHHHTTC----------------------CC
T ss_pred             cCCCCceEceEeHHHHHHHHHHHHhCc--c--cCCcEEEECCCCCCHHHHHHHHHHHhCCCC-CCCCCHHHHHHHhCCch
Confidence            448999999999999999999999975  2  467999999999999999999999999765 2222221     1111 


Q ss_pred             ------chhccCHHHHHHhhCCCcccc-hHhhhC
Q psy16546         85 ------VSMYANTDLAQRELGWSARCT-VEKMCK  111 (111)
Q Consensus        85 ------~~~~~d~~k~~~~lg~~p~~~-~~~~l~  111 (111)
                            ....++++|+++ +||+|.++ ++++|+
T Consensus       405 ~~~~~~~~~~~~~~kl~~-lG~~~~~~~l~e~l~  437 (516)
T 3oh8_A          405 AEELALASQRTAPAALEN-LSHTFRYTDIGAAIA  437 (516)
T ss_dssp             GGGGGGCEEEECCHHHHH-TTCCCSCSSHHHHHH
T ss_pred             hHHHhhcCCeechHHHHH-CCCCCCCCCHHHHHH
Confidence                  123468899995 99999997 998873

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=99.47  E-value=1.5e-13  Score=90.00  Aligned_cols=94  Identities=22%  Similarity=0.248  Sum_probs=75.4

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC-----------C
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR-----------E   81 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~-----------~   81 (111)
                      .|++.++|+|++|+|++++.+++++  .. .+++||+++++.+|+.|+++.+.+.+|.+.++...|..           +
T Consensus       165 ~~~~~~~~i~~~Dva~~~~~~~~~~--~~-~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~  241 (287)
T 2jl1_A          165 AGSGIVNSVTRNELALAAATVLTEE--GH-ENKTYNLVSNQPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFLVNAGVP  241 (287)
T ss_dssp             CTTCCBCCBCHHHHHHHHHHHHTSS--SC-TTEEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHHHTTCC
T ss_pred             CCCCccCccCHHHHHHHHHHHhcCC--CC-CCcEEEecCCCcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHHHhCCCC
Confidence            6788899999999999999999875  34 57899999999999999999999999988776655532           1


Q ss_pred             Ccc-------------chhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         82 GDI-------------VSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        82 ~~~-------------~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ...             ..+..|++|+++.||  |.++++++++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG--~~~~l~e~l~  282 (287)
T 2jl1_A          242 EPFTEITAAIYDAISKGEASKTSDDLQKLIG--SLTPLKETVK  282 (287)
T ss_dssp             HHHHHHHHHHHHHHHTTTTCCCCSHHHHHHS--SCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCcCCchHHHHHhC--CCCCHHHHHH
Confidence            100             123458899999999  7779999873

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=99.45  E-value=1.1e-13  Score=92.63  Aligned_cols=96  Identities=10%  Similarity=0.021  Sum_probs=71.2

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhcc-ccccceEEecCCCcccHHHHHHHHHHHhCCCc--cceEccCCC-Cccc---
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGE-HLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV--PYIVEARRE-GDIV---   85 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~-~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~--~~~~~~~~~-~~~~---   85 (111)
                      +++..++|+|++|+|++++.+++.+... . .+++||++ ++.+|+.|+++.+.+.+|.+.  .+...|... .+..   
T Consensus       228 ~~~~~~~~~~v~Dva~~~~~~~~~~~~~~~-~~~~~ni~-g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  305 (342)
T 2hrz_A          228 PESIRHWHASPRSAVGFLIHGAMIDVEKVG-PRRNLSMP-GLSATVGEQIEALRKVAGEKAVALIRREPNEMIMRMCEGW  305 (342)
T ss_dssp             CTTCEEEEECHHHHHHHHHHHHHSCHHHHC-SCCEEECC-CEEEEHHHHHHHHHHHHCHHHHTTEEECCCHHHHHHHTTS
T ss_pred             CCccceeeEehHHHHHHHHHHHhccccccC-CccEEEcC-CCCCCHHHHHHHHHHHcCcccccceeeccCcchhhhhccc
Confidence            5567778999999999999999864210 1 36799996 578999999999999998664  233333211 0111   


Q ss_pred             hhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         86 SMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        86 ~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ...+|++|+++ |||+|.++++++|+
T Consensus       306 ~~~~d~~k~~~-lG~~p~~~l~e~l~  330 (342)
T 2hrz_A          306 APGFEAKRARE-LGFTAESSFEEIIQ  330 (342)
T ss_dssp             CCCBCCHHHHH-TTCCCCSSHHHHHH
T ss_pred             ccccChHHHHH-cCCCCCCCHHHHHH
Confidence            12479999999 99999999999873

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=99.36  E-value=2.2e-12  Score=86.22  Aligned_cols=85  Identities=18%  Similarity=0.181  Sum_probs=63.3

Q ss_pred             eeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCC-CccceEccCCCCccchhccCHHHHHHh
Q psy16546         19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGK-PVPYIVEARREGDIVSMYANTDLAQRE   97 (111)
Q Consensus        19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~d~~k~~~~   97 (111)
                      +|+|++|+|++++.+++++  .  .++.||+++ ..+|+.|+++.+.+.++. +.+....+. +.. ....+|++|+ ++
T Consensus       239 ~~i~v~Dva~a~~~~~~~~--~--~~~~~~~~~-~~~s~~e~~~~l~~~~~~~~~~~~~~~~-~~~-~~~~~d~~k~-~~  310 (338)
T 2rh8_A          239 SIAHVEDVCRAHIFVAEKE--S--ASGRYICCA-ANTSVPELAKFLSKRYPQYKVPTDFGDF-PPK-SKLIISSEKL-VK  310 (338)
T ss_dssp             EEEEHHHHHHHHHHHHHCT--T--CCEEEEECS-EEECHHHHHHHHHHHCTTSCCCCCCTTS-CSS-CSCCCCCHHH-HH
T ss_pred             cEEEHHHHHHHHHHHHcCC--C--cCCcEEEec-CCCCHHHHHHHHHHhCCCCCCCCCCCCC-CcC-cceeechHHH-HH
Confidence            8999999999999999864  2  356898875 568999999999998762 222222211 112 1267899999 56


Q ss_pred             hCCCcccchHhhhC
Q psy16546         98 LGWSARCTVEKMCK  111 (111)
Q Consensus        98 lg~~p~~~~~~~l~  111 (111)
                      |||+|.++++++|+
T Consensus       311 lG~~p~~~l~~gl~  324 (338)
T 2rh8_A          311 EGFSFKYGIEEIYD  324 (338)
T ss_dssp             HTCCCSCCHHHHHH
T ss_pred             hCCCCCCCHHHHHH
Confidence            99999999999873

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=99.32  E-value=1.7e-12  Score=86.62  Aligned_cols=90  Identities=14%  Similarity=0.093  Sum_probs=65.0

Q ss_pred             ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCccchhccCHHHHH
Q psy16546         16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQ   95 (111)
Q Consensus        16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~   95 (111)
                      +.|+|+|++|+|++++.+++++  .. .++.| +++++.+|+.|+++.+.+.+|.. .+. .+..........+|++|++
T Consensus       242 ~~~~~v~v~Dva~a~~~~~~~~--~~-~g~~~-~~~g~~~s~~e~~~~i~~~~~~~-~~~-~~~~~~~~~~~~~d~~k~~  315 (342)
T 1y1p_A          242 PPQYYVSAVDIGLLHLGCLVLP--QI-ERRRV-YGTAGTFDWNTVLATFRKLYPSK-TFP-ADFPDQGQDLSKFDTAPSL  315 (342)
T ss_dssp             CSEEEEEHHHHHHHHHHHHHCT--TC-CSCEE-EECCEEECHHHHHHHHHHHCTTS-CCC-CCCCCCCCCCCEECCHHHH
T ss_pred             CcCCEeEHHHHHHHHHHHHcCc--cc-CCceE-EEeCCCCCHHHHHHHHHHHCCCc-cCC-CCCCccccccccCChHHHH
Confidence            6789999999999999999874  22 34444 45677899999999999999864 111 1111111223667999999


Q ss_pred             HhhCC---CcccchHhhhC
Q psy16546         96 RELGW---SARCTVEKMCK  111 (111)
Q Consensus        96 ~~lg~---~p~~~~~~~l~  111 (111)
                      +.|||   .+.++++++|+
T Consensus       316 ~~lg~~~~~~~~~l~~~l~  334 (342)
T 1y1p_A          316 EILKSLGRPGWRSIEESIK  334 (342)
T ss_dssp             HHHHHTTCCSCCCHHHHHH
T ss_pred             HHHhhcccCCcCCHHHHHH
Confidence            99887   46678998873

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=99.30  E-value=5.7e-12  Score=84.24  Aligned_cols=86  Identities=15%  Similarity=0.296  Sum_probs=63.6

Q ss_pred             eeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCC-CccceEccCCCCccchhccCHHHHHHh
Q psy16546         19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGK-PVPYIVEARREGDIVSMYANTDLAQRE   97 (111)
Q Consensus        19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~d~~k~~~~   97 (111)
                      .|+|++|+|++++.+++++  .  .++.|+++ +..+|+.|+++.+.+.++. +.+....+ ...+.....+|++|+ +.
T Consensus       227 ~~i~v~Dva~a~~~~~~~~--~--~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~d~~k~-~~  299 (337)
T 2c29_D          227 QFVHLDDLCNAHIYLFENP--K--AEGRYICS-SHDCIILDLAKMLREKYPEYNIPTEFKG-VDENLKSVCFSSKKL-TD  299 (337)
T ss_dssp             EEEEHHHHHHHHHHHHHCT--T--CCEEEEEC-CEEEEHHHHHHHHHHHCTTSCCCSCCTT-CCTTCCCCEECCHHH-HH
T ss_pred             CEEEHHHHHHHHHHHhcCc--c--cCceEEEe-CCCCCHHHHHHHHHHHCCCccCCCCCCc-ccCCCccccccHHHH-HH
Confidence            4999999999999999864  2  35678765 4568999999999998742 22222221 122334566899999 67


Q ss_pred             hCCCcccchHhhhC
Q psy16546         98 LGWSARCTVEKMCK  111 (111)
Q Consensus        98 lg~~p~~~~~~~l~  111 (111)
                      |||+|.++++++|+
T Consensus       300 lG~~p~~~l~e~l~  313 (337)
T 2c29_D          300 LGFEFKYSLEDMFT  313 (337)
T ss_dssp             HTCCCCCCHHHHHH
T ss_pred             cCCCcCCCHHHHHH
Confidence            99999999999873

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=99.29  E-value=6.2e-12  Score=83.38  Aligned_cols=87  Identities=17%  Similarity=0.125  Sum_probs=62.9

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCC-CccceE-ccCCCCccchhccCHHHHH
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGK-PVPYIV-EARREGDIVSMYANTDLAQ   95 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~-~~~~~~-~~~~~~~~~~~~~d~~k~~   95 (111)
                      ++|+|++|+|++++.+++++  ..  .+.|| ++++.+|+.|+++.+.+.++. +.+... ...... .....+|++|+ 
T Consensus       222 ~~~i~v~Dva~a~~~~~~~~--~~--~g~~~-~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~k~-  294 (322)
T 2p4h_X          222 FHMVHVDDVARAHIYLLENS--VP--GGRYN-CSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKG-ARLPDLNTKKL-  294 (322)
T ss_dssp             EEEEEHHHHHHHHHHHHHSC--CC--CEEEE-CCCEEEEHHHHHHHHHHHCTTSCCCCTTTTTTCCC-EECCEECCHHH-
T ss_pred             cCEEEHHHHHHHHHHHhhCc--CC--CCCEE-EcCCCCCHHHHHHHHHHhCCCCCCCCCccccCCCC-CcceecccHHH-
Confidence            38999999999999999764  22  34699 567889999999999988742 221110 001111 13467899999 


Q ss_pred             HhhCCCcccchHhhhC
Q psy16546         96 RELGWSARCTVEKMCK  111 (111)
Q Consensus        96 ~~lg~~p~~~~~~~l~  111 (111)
                      +.|||+|.++++++|+
T Consensus       295 ~~lG~~p~~~~~~~l~  310 (322)
T 2p4h_X          295 VDAGFDFKYTIEDMFD  310 (322)
T ss_dssp             HHTTCCCCCCHHHHHH
T ss_pred             HHhCCccCCCHHHHHH
Confidence            5599999999999873

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=99.12  E-value=2.9e-11  Score=81.85  Aligned_cols=94  Identities=7%  Similarity=-0.043  Sum_probs=68.7

Q ss_pred             CCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccc-cceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCccch
Q psy16546          8 DYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLK-IKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVS   86 (111)
Q Consensus         8 ~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~-~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~   86 (111)
                      ...+.+|++.++|+|++|+|++++.+++++  .. . +++||+++++.+|+.|+++.+.+.+|.+.+....+. +..   
T Consensus       158 ~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~--~~-~~~~~~~i~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~-~~~---  230 (369)
T 3st7_A          158 EIQVNDRNVELTLNYVDDIVAEIKRAIEGT--PT-IENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKL-DNL---  230 (369)
T ss_dssp             CCCCSCTTCEEEEEEHHHHHHHHHHHHHTC--CC-EETTEECCSCCEEEEHHHHHHHHHHHHHHHHHTCCCCT-TSH---
T ss_pred             CeEecCCCeEEEEEEHHHHHHHHHHHHhCC--cc-cCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccCCC-CCH---
Confidence            344558899999999999999999999986  22 2 799999999999999999999999986643332111 111   


Q ss_pred             hccCHHHHHHhhCCCcccchHhhh
Q psy16546         87 MYANTDLAQRELGWSARCTVEKMC  110 (111)
Q Consensus        87 ~~~d~~k~~~~lg~~p~~~~~~~l  110 (111)
                        .........++|.|..+++.++
T Consensus       231 --~~~~l~~~~l~~~p~~~~~~~l  252 (369)
T 3st7_A          231 --FEKDLYSTYLSYLPSTDFSYPL  252 (369)
T ss_dssp             --HHHHHHHHHHHTSCTTCSCCCC
T ss_pred             --HHHHHHHHHhcccCCcceeech
Confidence              1123344458899887776554

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=99.10  E-value=1.1e-10  Score=76.48  Aligned_cols=94  Identities=17%  Similarity=0.219  Sum_probs=71.4

Q ss_pred             CCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC--------CCc
Q psy16546         12 EDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR--------EGD   83 (111)
Q Consensus        12 ~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~--------~~~   83 (111)
                      ..|++.++|+|++|+|++++.++.++  .. .+++||++ ++.+|+.|+++.+.+.+|.+.++...+..        +..
T Consensus       163 ~~g~~~~~~i~~~Dva~~~~~~l~~~--~~-~g~~~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~  238 (289)
T 3e48_A          163 PAGDGRINYITRNDIARGVIAIIKNP--DT-WGKRYLLS-GYSYDMKELAAILSEASGTEIKYEPVSLETFAEMYDEPKG  238 (289)
T ss_dssp             CCTTCEEEEECHHHHHHHHHHHHHCG--GG-TTCEEEEC-CEEEEHHHHHHHHHHHHTSCCEECCCCHHHHHHHTCCSTT
T ss_pred             CCCCceeeeEEHHHHHHHHHHHHcCC--Cc-CCceEEeC-CCcCCHHHHHHHHHHHHCCceeEEeCCHHHHHHHhcCCcc
Confidence            37889999999999999999999986  33 47899999 99999999999999999987655444321        011


Q ss_pred             cch-------------hccCHHHHHHhhCCCcccchHhhh
Q psy16546         84 IVS-------------MYANTDLAQRELGWSARCTVEKMC  110 (111)
Q Consensus        84 ~~~-------------~~~d~~k~~~~lg~~p~~~~~~~l  110 (111)
                      ...             ....+..+++.+|+.|. ++++-+
T Consensus       239 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~p~-~~~~~~  277 (289)
T 3e48_A          239 FGALLASMYHAGARGLLDQESNDFKQLVNDQPQ-TLQSFL  277 (289)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCCSHHHHHHSSCCC-CHHHHH
T ss_pred             HHHHHHHHHHHHHCCCccccCchHHHHhCCCCC-CHHHHH
Confidence            110             12356678888998876 887754

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=98.95  E-value=2.4e-09  Score=71.89  Aligned_cols=68  Identities=13%  Similarity=0.272  Sum_probs=58.7

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecC-CCcccHHHHHHHHHHHhCCCccceEcc
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGT-GQGTSVLQLLRTFERVTGKPVPYIVEA   78 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~   78 (111)
                      +.++|      +|++.++|+|++|+|++++.++.++  .. .+++|++++ ++.+|+.|+++.+++.+|.+.++...+
T Consensus       183 ~~~~g------~g~~~~~~i~~~Dva~~~~~~l~~~--~~-~~~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~  251 (346)
T 3i6i_A          183 FQIYG------DGNVKAYFVAGTDIGKFTMKTVDDV--RT-LNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVT  251 (346)
T ss_dssp             EEEET------TSCCCEEEECHHHHHHHHHHHTTCG--GG-TTEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEEC
T ss_pred             EEEcc------CCCceEEecCHHHHHHHHHHHHhCc--cc-cCeEEEEeCCCCCCCHHHHHHHHHHHHCCCCceEecC
Confidence            45677      9999999999999999999999986  44 578899975 589999999999999999987776655

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=98.86  E-value=9.6e-09  Score=68.12  Aligned_cols=63  Identities=11%  Similarity=-0.051  Sum_probs=54.4

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecC-CCcccHHHHHHHHHHHhCCCccceEcc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGT-GQGTSVLQLLRTFERVTGKPVPYIVEA   78 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~   78 (111)
                      +|+..++|+|++|+|++++.++.++  .. .+++|++++ ++.+|+.|+++.+.+.+|.+.++...|
T Consensus       182 ~~~~~~~~i~~~Dva~~~~~~l~~~--~~-~g~~~~~~g~~~~~t~~e~~~~~~~~~g~~~~~~~~~  245 (321)
T 3c1o_A          182 TGETKFVLNYEEDIAKYTIKVACDP--RC-CNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMP  245 (321)
T ss_dssp             TSCCEEEEECHHHHHHHHHHHHHCG--GG-TTEEEECCCGGGEEEHHHHHHHHHHHHTSCCCEEEEC
T ss_pred             CCCcceeEeeHHHHHHHHHHHHhCc--cc-cCeEEEEeCCCCcccHHHHHHHHHHHcCCcceeeeCC
Confidence            8899999999999999999999876  34 577888875 589999999999999999887766655

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=98.85  E-value=3.9e-09  Score=69.68  Aligned_cols=63  Identities=13%  Similarity=0.141  Sum_probs=53.3

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCC-CcccHHHHHHHHHHHhCCCccceEcc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG-QGTSVLQLLRTFERVTGKPVPYIVEA   78 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~-~~~s~~e~~~~i~~~~~~~~~~~~~~   78 (111)
                      +|++.++|+|++|+|++++.++.++  .. .+++|+++++ +.+|+.|+++.+.+.+|.+.++...|
T Consensus       187 ~g~~~~~~i~~~Dva~~~~~~l~~~--~~-~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~  250 (313)
T 1qyd_A          187 DGNVKGIWVDEDDVGTYTIKSIDDP--QT-LNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS  250 (313)
T ss_dssp             TSCSEEEEECHHHHHHHHHHHTTCG--GG-SSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred             CCCceEEEEEHHHHHHHHHHHHhCc--cc-CCceEEEeCCCCccCHHHHHHHHHHhcCCCCceEECC
Confidence            8889999999999999999999876  34 5677887754 78999999999999999886655544

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=98.83  E-value=8.3e-09  Score=69.76  Aligned_cols=66  Identities=14%  Similarity=0.127  Sum_probs=55.3

Q ss_pred             CCCccceeeeH-HHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC
Q psy16546         13 DGTGIRDYIHV-MDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR   80 (111)
Q Consensus        13 ~g~~~r~~v~v-~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~   80 (111)
                      +|++.++|+|+ +|+|++++.+++++.... .+++||+++ +.+|+.|+++.+.+.+|.+.+....|..
T Consensus       182 ~~~~~~~~i~v~~Dva~ai~~~l~~~~~~~-~g~~~~l~~-~~~s~~e~~~~i~~~~G~~~~~~~vp~~  248 (352)
T 1xgk_A          182 DPDIPLPWLDAEHDVGPALLQIFKDGPQKW-NGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPKV  248 (352)
T ss_dssp             CTTSCEEEECHHHHHHHHHHHHHHHCHHHH-TTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSSC
T ss_pred             CCCCceeeEecHHHHHHHHHHHHhCCchhh-CCeEEEEec-CCCCHHHHHHHHHHHHCCCCceEECCHH
Confidence            68889999999 899999999998742122 478999995 6799999999999999998777777644

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=98.80  E-value=1.1e-08  Score=67.84  Aligned_cols=63  Identities=13%  Similarity=0.071  Sum_probs=53.9

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecC-CCcccHHHHHHHHHHHhCCCccceEcc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGT-GQGTSVLQLLRTFERVTGKPVPYIVEA   78 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~   78 (111)
                      +|++.++|+|++|+|++++.++.++  .. .+++|++++ ++.+|+.|+++.+.+.+|.+.++...|
T Consensus       181 ~~~~~~~~i~~~Dva~~~~~~l~~~--~~-~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~  244 (318)
T 2r6j_A          181 TGEAKFAMNYEQDIGLYTIKVATDP--RA-LNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVP  244 (318)
T ss_dssp             TSCCEEEEECHHHHHHHHHHHTTCG--GG-TTEEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEEEC
T ss_pred             CCCceeeEeeHHHHHHHHHHHhcCc--cc-cCeEEEecCCCCccCHHHHHHHHHHHhCCCCceeecC
Confidence            8899999999999999999999876  33 467788764 578999999999999999887766655

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=98.80  E-value=5.9e-09  Score=68.64  Aligned_cols=63  Identities=16%  Similarity=0.152  Sum_probs=54.0

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecC-CCcccHHHHHHHHHHHhCCCccceEcc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGT-GQGTSVLQLLRTFERVTGKPVPYIVEA   78 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~   78 (111)
                      +|++.++|+|++|+|++++.+++++  .. .+++|++++ ++.+|+.|+++.+.+.+|.+.++...|
T Consensus       182 ~~~~~~~~i~~~Dva~~~~~~l~~~--~~-~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~  245 (308)
T 1qyc_A          182 DGNARVVFVKEEDIGTFTIKAVDDP--RT-LNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP  245 (308)
T ss_dssp             TSCCEEEEECHHHHHHHHHTTSSCG--GG-TTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred             CCCceEEEecHHHHHHHHHHHHhCc--cc-cCeEEEEeCCCCccCHHHHHHHHHHHhCCCCceEeCC
Confidence            8899999999999999999999875  34 567888875 478999999999999999887766655

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=98.79  E-value=1.4e-08  Score=66.77  Aligned_cols=63  Identities=16%  Similarity=0.147  Sum_probs=53.6

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecC-CCcccHHHHHHHHHHHhCCCccceEcc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGT-GQGTSVLQLLRTFERVTGKPVPYIVEA   78 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~   78 (111)
                      +|++.++|+|++|+|++++.++.++  .. .+++|++.+ ++.+|+.|+++.+.+.+|.+.++...|
T Consensus       181 ~~~~~~~~i~~~Dva~~~~~~l~~~--~~-~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~  244 (307)
T 2gas_A          181 DGNVKGAYVTEADVGTFTIRAANDP--NT-LNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVS  244 (307)
T ss_dssp             TSCSEEEEECHHHHHHHHHHHHTCG--GG-TTEEEECCCGGGEEEHHHHHHHHHHHHTSCCEEEEEC
T ss_pred             CCCcceEEeeHHHHHHHHHHHHcCc--cc-cCceEEEeCCCCcCCHHHHHHHHHHHhCCCCceeecC
Confidence            8889999999999999999999875  34 467787765 478999999999999999887766555

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=98.68  E-value=7.3e-09  Score=71.40  Aligned_cols=52  Identities=19%  Similarity=0.063  Sum_probs=46.7

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhC
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTG   69 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~   69 (111)
                      +|++.++|+|++|+|++++.++.++   . .+++||+++++++++.|+++.+++ ++
T Consensus       292 ~~~~~~~~v~v~DvA~ai~~~~~~~---~-~g~~~~l~~~~~~s~~el~~~i~~-~g  343 (427)
T 4f6c_A          292 MAEMPVDFSFVDTTARQIVALAQVN---T-PQIIYHVLSPNKMPVKSLLECVKR-KE  343 (427)
T ss_dssp             HHTCEECCEEHHHHHHHHHHHTTSC---C-CCSEEEESCSCCEEHHHHHHHHHS-SC
T ss_pred             cccceEEEeeHHHHHHHHHHHHcCC---C-CCCEEEecCCCCCcHHHHHHHHHH-cC
Confidence            3678899999999999999999875   2 589999999999999999999998 55

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=98.60  E-value=1.2e-07  Score=66.36  Aligned_cols=57  Identities=11%  Similarity=0.048  Sum_probs=47.4

Q ss_pred             CccceeeeHHHHHHHHHHHHhhhh--ccccccceEEecCCCc--ccHHHHHHHHHHHhCCCcc
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNKLQ--GEHLKIKFYNLGTGQG--TSVLQLLRTFERVTGKPVP   73 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~~~--~~~~~~~~yni~~~~~--~s~~e~~~~i~~~~~~~~~   73 (111)
                      ++.++|+||+|+|++++.++.+..  +.. .+++||+++++.  +|+.|+++.+.+. +.+.+
T Consensus       323 ~~~~~~v~vdDvA~ai~~~~~~~~~~~~~-~~~~ynv~~~~~~~~s~~el~~~l~~~-g~~~~  383 (478)
T 4dqv_A          323 RAHFDGLPVTFVAEAIAVLGARVAGSSLA-GFATYHVMNPHDDGIGLDEYVDWLIEA-GYPIR  383 (478)
T ss_dssp             CCCCCEEEHHHHHHHHHHHHHTTC-CCCC-SEEEEEESCCCCSSCSHHHHHHHHHHT-TCSCE
T ss_pred             cceeeeeeHHHHHHHHHHHHhhcccCCCC-CCceEEecCCCCCCcCHHHHHHHHHHc-CCCcc
Confidence            688899999999999999998620  134 678999999988  9999999999995 65543

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=98.58  E-value=1.6e-08  Score=71.23  Aligned_cols=52  Identities=19%  Similarity=0.056  Sum_probs=46.9

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHh
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVT   68 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~   68 (111)
                      +|++.++|+|++|+|++++.++.++   . .+++||+++++.+|+.++++.+++..
T Consensus       373 ~g~~~~~~v~v~DvA~ai~~~~~~~---~-~~~~~nl~~~~~~s~~el~~~i~~~~  424 (508)
T 4f6l_B          373 MAEMPVDFSFVDTTARQIVALAQVN---T-PQIIYHVLSPNKMPVKSLLECVKRKE  424 (508)
T ss_dssp             GGGSEEECEEHHHHHHHHHHHTTBC---C-SCSEEEESCSCEEEHHHHHHHHHSSC
T ss_pred             ccCceEEEEcHHHHHHHHHHHHhCC---C-CCCEEEeCCCCCCCHHHHHHHHHHcC
Confidence            5789999999999999999999875   2 58999999999999999999999754

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=98.46  E-value=2.4e-07  Score=60.85  Aligned_cols=63  Identities=17%  Similarity=0.019  Sum_probs=51.9

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEcc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEA   78 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~   78 (111)
                      .|+..++|+|++|+|++++.++.++. .. .+++|++++ +.+|+.|+++.+.+.+|++.+....|
T Consensus       181 ~~~~~~~~i~~~Dva~~~~~~l~~~~-~~-~g~~~~~~g-~~~s~~e~~~~~~~~~g~~~~~~~~~  243 (299)
T 2wm3_A          181 TGDVPMDGMSVSDLGPVVLSLLKMPE-KY-VGQNIGLST-CRHTAEEYAALLTKHTRKVVHDAKMT  243 (299)
T ss_dssp             CTTSCEEEECGGGHHHHHHHHHHSHH-HH-TTCEEECCS-EEECHHHHHHHHHHHHSSCEEECCCC
T ss_pred             CCCCccceecHHHHHHHHHHHHcChh-hh-CCeEEEeee-ccCCHHHHHHHHHHHHCCCceeEecC
Confidence            57888999999999999999998641 22 478999985 68999999999999999886554444

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=98.45  E-value=2.8e-07  Score=61.99  Aligned_cols=53  Identities=13%  Similarity=0.087  Sum_probs=44.9

Q ss_pred             CCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHh
Q psy16546         11 TEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVT   68 (111)
Q Consensus        11 ~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~   68 (111)
                      +.+|+..|+|+|++|+|++++.++++.   . .+++|+++++ .+|+.|+++.+.+.+
T Consensus       209 i~~~~~~r~~i~v~D~a~~v~~~l~~~---~-~g~~~~~~~~-~~s~~el~~~i~~~~  261 (344)
T 2gn4_A          209 ITDIRMTRFWITLDEGVSFVLKSLKRM---H-GGEIFVPKIP-SMKMTDLAKALAPNT  261 (344)
T ss_dssp             ESCTTCEEEEECHHHHHHHHHHHHHHC---C-SSCEEEECCC-EEEHHHHHHHHCTTC
T ss_pred             EeCCCeEEeeEEHHHHHHHHHHHHhhc---c-CCCEEecCCC-cEEHHHHHHHHHHhC
Confidence            347888999999999999999999975   3 5789998765 699999999998654

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=98.21  E-value=5.6e-07  Score=58.24  Aligned_cols=63  Identities=14%  Similarity=0.111  Sum_probs=45.3

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCccchhccCHH
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTD   92 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~   92 (111)
                      ++...++|+|++|+|++++.+++++  .. .+++|++.++...                               .+.|..
T Consensus       171 ~~~~~~~~~~~~dva~~~~~~~~~~--~~-~~~~~~~~~~~~~-------------------------------~~~d~~  216 (267)
T 3ay3_A          171 DARMMATWLSVDDFMRLMKRAFVAP--KL-GCTVVYGASANTE-------------------------------SWWDND  216 (267)
T ss_dssp             SHHHHHHBCCHHHHHHHHHHHHHSS--CC-CEEEEEECCSCSS-------------------------------CCBCCG
T ss_pred             CCCeeeccccHHHHHHHHHHHHhCC--CC-CceeEecCCCccc-------------------------------cccCHH
Confidence            4456789999999999999999875  33 4578887654322                               234566


Q ss_pred             HHHHhhCCCcccchHhhh
Q psy16546         93 LAQRELGWSARCTVEKMC  110 (111)
Q Consensus        93 k~~~~lg~~p~~~~~~~l  110 (111)
                      ++ +.+||+|.+++++++
T Consensus       217 ~~-~~lg~~p~~~~~~~~  233 (267)
T 3ay3_A          217 KS-AFLGWVPQDSSEIWR  233 (267)
T ss_dssp             GG-GGGCCCCCCCGGGGH
T ss_pred             HH-HHcCCCCCCCHHHHH
Confidence            66 667888877777765

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.17  E-value=1.9e-06  Score=54.75  Aligned_cols=49  Identities=14%  Similarity=0.131  Sum_probs=41.4

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHH
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFE   65 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~   65 (111)
                      ++...++|+|++|+|++++.+++++  .. .+++||++++ ..++.|+++.++
T Consensus       187 ~~~~~~~~i~~~Dva~~~~~~~~~~--~~-~g~~~~v~~~-~~~~~e~~~~i~  235 (236)
T 3e8x_A          187 HFSEITRSITRHDVAKVIAELVDQQ--HT-IGKTFEVLNG-DTPIAKVVEQLG  235 (236)
T ss_dssp             SCSCCCCCEEHHHHHHHHHHHTTCG--GG-TTEEEEEEEC-SEEHHHHHHTC-
T ss_pred             CCCcccCcEeHHHHHHHHHHHhcCc--cc-cCCeEEEeCC-CcCHHHHHHHhc
Confidence            5566789999999999999999986  34 6899999987 599999998765

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=98.15  E-value=8.5e-07  Score=56.49  Aligned_cols=51  Identities=25%  Similarity=0.240  Sum_probs=43.5

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC---cccHHHHHHHHHHHhCCC
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ---GTSVLQLLRTFERVTGKP   71 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~---~~s~~e~~~~i~~~~~~~   71 (111)
                      ++|+|++|+|++++.+++++  .. .+++||+++++   .+|+.|+++.+.+.+|++
T Consensus       200 ~~~~~~~Dva~~~~~~~~~~--~~-~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~~  253 (253)
T 1xq6_A          200 TKTVPRADVAEVCIQALLFE--EA-KNKAFDLGSKPEGTSTPTKDFKALFSQVTSRF  253 (253)
T ss_dssp             CCEEEHHHHHHHHHHHTTCG--GG-TTEEEEEEECCTTTSCCCCCHHHHHHTCCCCC
T ss_pred             CcEEcHHHHHHHHHHHHcCc--cc-cCCEEEecCCCcCCCCCHHHHHHHHHHHhCCC
Confidence            56999999999999999875  33 57899999864   599999999999988753

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=98.09  E-value=6e-06  Score=51.98  Aligned_cols=39  Identities=18%  Similarity=0.223  Sum_probs=33.5

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHH
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQ   59 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e   59 (111)
                      ++|+|++|+|++++.+++++  .. .+++|+++++++.++++
T Consensus       189 ~~~i~~~Dva~ai~~~l~~~--~~-~g~~~~~~~~~~~~~~~  227 (227)
T 3dhn_A          189 NSHISVEDYAAAMIDELEHP--KH-HQERFTIGYLEHHHHHH  227 (227)
T ss_dssp             CCEEEHHHHHHHHHHHHHSC--CC-CSEEEEEECCSCCC---
T ss_pred             CcEEeHHHHHHHHHHHHhCc--cc-cCcEEEEEeehhcccCC
Confidence            89999999999999999987  56 79999999999988753

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.96  E-value=1e-05  Score=50.73  Aligned_cols=45  Identities=13%  Similarity=0.076  Sum_probs=38.4

Q ss_pred             CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHH
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRT   63 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~   63 (111)
                      +..++|+|++|+|++++.+++++  .. .+++||+++++ .++.|+++.
T Consensus       166 ~~~~~~i~~~Dva~~i~~~l~~~--~~-~g~~~~i~~g~-~~~~e~~~~  210 (219)
T 3dqp_A          166 DEVSASNTIGDVADTIKELVMTD--HS-IGKVISMHNGK-TAIKEALES  210 (219)
T ss_dssp             SSCCCCEEHHHHHHHHHHHHTCG--GG-TTEEEEEEECS-EEHHHHHHT
T ss_pred             CCcCCcccHHHHHHHHHHHHhCc--cc-cCcEEEeCCCC-ccHHHHHHH
Confidence            56789999999999999999986  44 58899998774 899998765

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.45  E-value=8.7e-05  Score=46.22  Aligned_cols=38  Identities=11%  Similarity=0.234  Sum_probs=26.8

Q ss_pred             eeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHH
Q psy16546         19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQ   59 (111)
Q Consensus        19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e   59 (111)
                      +++|++|+|++++.+++++  .. .+++||++++...+-.|
T Consensus       183 ~~i~~~Dva~~~~~~l~~~--~~-~g~~~~~~~~~~~~~~~  220 (221)
T 3ew7_A          183 SFISMEDYAIAVLDEIERP--NH-LNEHFTVAGKLEHHHHH  220 (221)
T ss_dssp             -CCCHHHHHHHHHHHHHSC--SC-TTSEEECCC--------
T ss_pred             ceEeHHHHHHHHHHHHhCc--cc-cCCEEEECCCCcccccc
Confidence            6999999999999999987  55 78999999887766544

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.41  E-value=0.00015  Score=45.31  Aligned_cols=43  Identities=9%  Similarity=-0.014  Sum_probs=32.0

Q ss_pred             CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHH
Q psy16546         14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQ   59 (111)
Q Consensus        14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e   59 (111)
                      +.+.++|+|++|+|++++.+++++  .. .+++|++++.+..++.+
T Consensus       180 ~~~~~~~i~~~DvA~~~~~~l~~~--~~-~g~~~~~~~~~~~~~~~  222 (224)
T 3h2s_A          180 GEDGQSHITTGNMALAILDQLEHP--TA-IRDRIVVRDADLEHHHH  222 (224)
T ss_dssp             CTTSCCBCCHHHHHHHHHHHHHSC--CC-TTSEEEEEECC------
T ss_pred             CCCCCceEeHHHHHHHHHHHhcCc--cc-cCCEEEEecCcchhccc
Confidence            345678999999999999999987  55 78999999877666543

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=97.12  E-value=6.6e-05  Score=46.64  Aligned_cols=36  Identities=11%  Similarity=-0.126  Sum_probs=31.2

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccH
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSV   57 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~   57 (111)
                      .++|+|++|+|++++.+++++     .+++||+++++..++
T Consensus       176 ~~~~i~~~Dva~~~~~~~~~~-----~~~~~~i~~~~~~~~  211 (215)
T 2a35_A          176 KYHGIEACDLARALWRLALEE-----GKGVRFVESDELRKL  211 (215)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCC-----CSEEEEEEHHHHHHH
T ss_pred             CcCcEeHHHHHHHHHHHHhcC-----CCCceEEcHHHHHHh
Confidence            679999999999999999986     578999998766554

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.06  E-value=0.00025  Score=45.82  Aligned_cols=50  Identities=6%  Similarity=-0.118  Sum_probs=40.8

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHH
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERV   67 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~   67 (111)
                      .+.+++++|+|++++.++....... .+++|++.++..+++.|+++.+.+.
T Consensus       227 ~~~~~~~~dva~~~~~l~~~~~~~~-~G~~~~v~gg~~~~~~e~~~~i~~~  276 (278)
T 2bgk_A          227 KGTLLRAEDVADAVAYLAGDESKYV-SGLNLVIDGGYTRTNPAFPTALKHG  276 (278)
T ss_dssp             CSCCCCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTGGGCCTHHHHHSCSC
T ss_pred             ccccCCHHHHHHHHHHHcCcccccC-CCCEEEECCcccccCCccchhhhhh
Confidence            3568999999999999997642233 5789999999999999999987654

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=96.82  E-value=0.00052  Score=43.56  Aligned_cols=43  Identities=7%  Similarity=-0.116  Sum_probs=33.8

Q ss_pred             ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHH
Q psy16546         16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQ   59 (111)
Q Consensus        16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e   59 (111)
                      ..++|+|++|+|++++.++.++.... .+++|+++++..++++|
T Consensus       210 ~~~~~~~~~dva~~~~~l~~~~~~~~-~G~~~~v~gg~~~~~~e  252 (255)
T 2dkn_A          210 PLGRGSEPREVAEAIAFLLGPQASFI-HGSVLFVDGGMDALMRA  252 (255)
T ss_dssp             TTSSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTHHHHHCT
T ss_pred             HhcCCCCHHHHHHHHHHHhCCCcccc-eeeEEEecCCeEeeeec
Confidence            55689999999999999998752223 57899999887776543

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.36  E-value=0.0023  Score=39.15  Aligned_cols=33  Identities=15%  Similarity=-0.106  Sum_probs=28.5

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ   53 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~   53 (111)
                      ++|+|++|+|++++.+++++  .. .+++|+++++.
T Consensus       173 ~~~i~~~Dva~~~~~~~~~~--~~-~g~~~~i~~g~  205 (206)
T 1hdo_A          173 SRVISKHDLGHFMLRCLTTD--EY-DGHSTYPSHQY  205 (206)
T ss_dssp             CSEEEHHHHHHHHHHTTSCS--TT-TTCEEEEECCC
T ss_pred             CCccCHHHHHHHHHHHhcCc--cc-cccceeeeccc
Confidence            68999999999999999886  44 68899999764

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.18  E-value=0.0017  Score=41.90  Aligned_cols=55  Identities=5%  Similarity=-0.125  Sum_probs=42.2

Q ss_pred             CCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCC
Q psy16546         11 TEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGK   70 (111)
Q Consensus        11 ~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~   70 (111)
                      +.++...++|+|++|+++++..+++.+  .. ...++++.+++..++.++...  +.+|.
T Consensus       170 ~~~~~~~~~~~~~~d~a~~~~~~~~~~--~~-~~~~~~~~s~~~~~~~~~~~~--~~~g~  224 (267)
T 3rft_A          170 PNNYRMLSTWFSHDDFVSLIEAVFRAP--VL-GCPVVWGASANDAGWWDNSHL--GFLGW  224 (267)
T ss_dssp             CCSTTHHHHBCCHHHHHHHHHHHHHCS--CC-CSCEEEECCCCTTCCBCCGGG--GGGCC
T ss_pred             CCCCCceeeEEcHHHHHHHHHHHHhCC--CC-CceEEEEeCCCCCCcccChhH--HHCCC
Confidence            457788899999999999999999876  44 456888888887777766433  45554

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=95.95  E-value=0.0051  Score=39.81  Aligned_cols=49  Identities=12%  Similarity=-0.109  Sum_probs=38.9

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhC
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTG   69 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~   69 (111)
                      .+.+.+++|+|++++.+++++   . .+..|+++++....+.+.+..+.+.++
T Consensus       219 ~~~~~~~~dva~a~~~~~~~~---~-~~~~~~l~s~~~~~i~g~~~~i~~~~~  267 (281)
T 3m1a_A          219 GSQPGDPAKAAAAIRLALDTE---K-TPLRLALGGDAVDFLTGHLDSVRAELT  267 (281)
T ss_dssp             ---CBCHHHHHHHHHHHHHSS---S-CCSEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHhCC---C-CCeEEecCchHHHHHHHHHHHHHHHHH
Confidence            356889999999999999986   3 578999998888888888888777664

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.84  E-value=0.0074  Score=38.98  Aligned_cols=50  Identities=8%  Similarity=-0.084  Sum_probs=30.7

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhcc-ccccceEEecCCCcccHHHHHHHHHHHh
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGE-HLKIKFYNLGTGQGTSVLQLLRTFERVT   68 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~-~~~~~~yni~~~~~~s~~e~~~~i~~~~   68 (111)
                      +.+.+.+|+|++++.++..+... . .+.+|++.+|...++.++++.+.+.+
T Consensus       227 ~~~~~~~dvA~~v~~l~s~~~~~~~-tG~~~~vdgG~~~~~~~~~~~~~~~~  277 (278)
T 1spx_A          227 GVMGQPQDIAEVIAFLADRKTSSYI-IGHQLVVDGGSSLIMGLHCQDFAKLL  277 (278)
T ss_dssp             SSCBCHHHHHHHHHHHHCHHHHTTC-CSCEEEESTTGGGC------------
T ss_pred             cCCCCHHHHHHHHHHHcCccccCcc-cCcEEEECCCcccccCcccccHHHHh
Confidence            45889999999999998764212 3 58899999999999999999988764

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=95.46  E-value=0.002  Score=42.11  Aligned_cols=51  Identities=12%  Similarity=-0.003  Sum_probs=39.5

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhC
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTG   69 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~   69 (111)
                      +.|.+++|+|++++.++....... .+++|++++|..+++.++++.+.+..+
T Consensus       236 ~~~~~~~dva~~~~~l~~~~~~~~-~G~~~~v~gg~~~~~~~~~~~~~~~~g  286 (302)
T 1w6u_A          236 GRLGTVEELANLAAFLCSDYASWI-NGAVIKFDGGEEVLISGEFNDLRKVTK  286 (302)
T ss_dssp             SSCBCHHHHHHHHHHHTSGGGTTC-CSCEEEESTTHHHHHHSTTGGGGGCCH
T ss_pred             CCCCCHHHHHHHHHHHcCCccccc-CCCEEEECCCeeeccCCccccchhhcc
Confidence            458899999999999987642223 478999999988888888777766544

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=95.33  E-value=0.017  Score=37.42  Aligned_cols=55  Identities=18%  Similarity=0.064  Sum_probs=43.6

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc-HHHHHHHHHHHhCCCc
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS-VLQLLRTFERVTGKPV   72 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s-~~e~~~~i~~~~~~~~   72 (111)
                      .+.+.+++|+|++++.++....... .+++|++.+|...+ ..++.+.+.+.++.+.
T Consensus       221 ~~r~~~~~dva~~~~~l~s~~~~~i-tG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~  276 (281)
T 3svt_A          221 LPRQGEVEDVANMAMFLLSDAASFV-TGQVINVDGGQMLRRGPDFSAMLEPVFGRDA  276 (281)
T ss_dssp             SSSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTGGGSCCCCCHHHHHHHHCTTG
T ss_pred             CCCCCCHHHHHHHHHHHhCcccCCC-CCCEEEeCCChhcccCCcchhccccccCCcc
Confidence            4567899999999999987653233 58899999888777 7788999999888653

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=95.20  E-value=0.025  Score=35.82  Aligned_cols=40  Identities=13%  Similarity=0.032  Sum_probs=31.1

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccH
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSV   57 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~   57 (111)
                      .+.|.+++|+|++++.++....... .+++|+++++..+|+
T Consensus       215 ~~~~~~~~dva~~~~~l~~~~~~~~-~G~~~~v~gg~~~s~  254 (255)
T 1fmc_A          215 IRRLGQPQDIANAALFLCSPAASWV-SGQILTVSGGGVQEL  254 (255)
T ss_dssp             SCSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTSCCCC
T ss_pred             cccCCCHHHHHHHHHHHhCCccccC-CCcEEEECCceeccC
Confidence            3568999999999999997642223 477999999888775

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=94.63  E-value=0.042  Score=35.09  Aligned_cols=38  Identities=11%  Similarity=-0.065  Sum_probs=29.2

Q ss_pred             CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546         14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG   52 (111)
Q Consensus        14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~   52 (111)
                      +...+.|++++|+|++++.++..+.... .+++|++++|
T Consensus       235 ~~~~~~~~~~~dva~~i~~l~~~~~~~~-~G~~~~v~gG  272 (274)
T 1ja9_A          235 MNPLKRIGYPADIGRAVSALCQEESEWI-NGQVIKLTGG  272 (274)
T ss_dssp             TSTTSSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTT
T ss_pred             cCCCCCccCHHHHHHHHHHHhCcccccc-cCcEEEecCC
Confidence            3455789999999999999997652223 5789999876

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=94.54  E-value=0.036  Score=34.86  Aligned_cols=38  Identities=13%  Similarity=0.053  Sum_probs=29.0

Q ss_pred             ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546         16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG   54 (111)
Q Consensus        16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~   54 (111)
                      ..++|+|++|+|++++.++..+.... .++.+++.++..
T Consensus       205 ~~~~~~~~~dva~~~~~l~~~~~~~~-~G~~~~v~gG~~  242 (244)
T 1cyd_A          205 PLRKFAEVEDVVNSILFLLSDRSAST-SGGGILVDAGYL  242 (244)
T ss_dssp             TTSSCBCHHHHHHHHHHHHSGGGTTC-CSSEEEESTTGG
T ss_pred             CccCCCCHHHHHHHHHHHhCchhhcc-cCCEEEECCCcc
Confidence            45789999999999999998652223 467888887644

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=94.21  E-value=0.066  Score=33.66  Aligned_cols=37  Identities=11%  Similarity=0.050  Sum_probs=28.7

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG   54 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~   54 (111)
                      .+.|++++|+|++++.++....... .+++|++++|..
T Consensus       206 ~~~~~~~~dva~~~~~l~~~~~~~~-~G~~~~v~gG~~  242 (244)
T 3d3w_A          206 LGKFAEVEHVVNAILFLLSDRSGMT-TGSTLPVEGGFW  242 (244)
T ss_dssp             TCSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTGG
T ss_pred             CCCCcCHHHHHHHHHHHcCccccCC-CCCEEEECCCcc
Confidence            4678999999999999998652233 577999987754

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=93.49  E-value=0.028  Score=35.94  Aligned_cols=42  Identities=14%  Similarity=-0.013  Sum_probs=31.9

Q ss_pred             CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc
Q psy16546         14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS   56 (111)
Q Consensus        14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s   56 (111)
                      +...+.|.+++|+|++++.++....... .+++|++.+|..+|
T Consensus       218 ~~p~~r~~~~~dva~~v~~L~s~~~~~i-tG~~i~vdgG~~~s  259 (259)
T 4e6p_A          218 AVPFGRMGTAEDLTGMAIFLASAESDYI-VSQTYNVDGGNWMS  259 (259)
T ss_dssp             HSTTSSCBCTHHHHHHHHHTTSGGGTTC-CSCEEEESTTSSCC
T ss_pred             cCCCCCCcCHHHHHHHHHHHhCCccCCC-CCCEEEECcChhcC
Confidence            3456789999999999998887542233 57899999887654

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=93.42  E-value=0.039  Score=36.53  Aligned_cols=53  Identities=13%  Similarity=0.015  Sum_probs=41.4

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcc-----------------cHHHHHHHHHHHhCCC
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGT-----------------SVLQLLRTFERVTGKP   71 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~-----------------s~~e~~~~i~~~~~~~   71 (111)
                      +.++..+|+|++++.++....... .|.++++.+|...                 +..|+++.+.+.++.+
T Consensus       244 ~~~~~pedva~~v~~L~s~~~~~i-tG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~  313 (322)
T 3qlj_A          244 FDAMAPENVSPLVVWLGSAEARDV-TGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPVVADLLGKA  313 (322)
T ss_dssp             CCTTCGGGTHHHHHHHTSGGGGGC-CSCEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHHHHHHHHHS
T ss_pred             cCCCCHHHHHHHHHHHhCccccCC-CCCEEEECCCccccCCCcccccccCccCCCCHHHHHHHHHHHhhcc
Confidence            456789999999999987653234 5789999877654                 7799999999998744

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=92.92  E-value=0.14  Score=32.16  Aligned_cols=35  Identities=9%  Similarity=0.006  Sum_probs=28.8

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG   54 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~   54 (111)
                      ..+++.+|+|++++.++.++. .. .+++|++++++.
T Consensus       192 ~~~i~~~DvA~~i~~ll~~~~-~~-~g~~~~i~~~~~  226 (236)
T 3qvo_A          192 GTIVSRKSVAALITDIIDKPE-KH-IGENIGINQPGT  226 (236)
T ss_dssp             CSEEEHHHHHHHHHHHHHSTT-TT-TTEEEEEECSSC
T ss_pred             CcEECHHHHHHHHHHHHcCcc-cc-cCeeEEecCCCC
Confidence            468999999999999999862 24 689999998754

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=92.40  E-value=0.16  Score=32.78  Aligned_cols=39  Identities=3%  Similarity=0.083  Sum_probs=30.7

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS   56 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s   56 (111)
                      .+.|.+.+|+|++++.++....... .+.++++.+|...+
T Consensus       241 ~~~~~~p~dvA~~v~~L~s~~~~~i-tG~~i~vdgG~~~~  279 (281)
T 3s55_A          241 YAPFLKPEEVTRAVLFLVDEASSHI-TGTVLPIDAGATAR  279 (281)
T ss_dssp             SCSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTGGGG
T ss_pred             CcCCCCHHHHHHHHHHHcCCcccCC-CCCEEEECCCcccC
Confidence            3779999999999999998753233 57899999886654

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=92.38  E-value=0.2  Score=31.40  Aligned_cols=37  Identities=8%  Similarity=-0.072  Sum_probs=28.2

Q ss_pred             ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546         16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ   53 (111)
Q Consensus        16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~   53 (111)
                      ..+.+++++|+|++++.++..+.... .+++|++++|.
T Consensus       209 ~~~~~~~~~dva~~~~~l~~~~~~~~-~G~~~~v~gG~  245 (247)
T 2hq1_A          209 PLKRFGTPEEVANVVGFLASDDSNYI-TGQVINIDGGL  245 (247)
T ss_dssp             TTSSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTC
T ss_pred             CCCCCCCHHHHHHHHHHHcCcccccc-cCcEEEeCCCc
Confidence            34678999999999999887642233 57899998764

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=92.36  E-value=0.11  Score=33.11  Aligned_cols=39  Identities=15%  Similarity=-0.070  Sum_probs=30.3

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS   56 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s   56 (111)
                      .+.+.+.+|+|++++.++.....-. .+++|++++|...|
T Consensus       221 ~~~~~~~~dva~~v~~l~s~~~~~~-tG~~~~vdgG~~~s  259 (260)
T 2zat_A          221 IRRLGNPEDCAGIVSFLCSEDASYI-TGETVVVGGGTASR  259 (260)
T ss_dssp             CSSCBCGGGGHHHHHHHTSGGGTTC-CSCEEEESTTCCCC
T ss_pred             CCCCCCHHHHHHHHHHHcCcccCCc-cCCEEEECCCcccc
Confidence            3568999999999999987652223 57899999887765

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=91.94  E-value=0.05  Score=34.85  Aligned_cols=38  Identities=11%  Similarity=0.105  Sum_probs=31.6

Q ss_pred             eeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHH
Q psy16546         19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQ   59 (111)
Q Consensus        19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e   59 (111)
                      .+++.+|+|++++.++...  .. .+.+|++++++..++.+
T Consensus       220 ~~~~~~dvA~~v~~l~s~~--~~-~G~~~~v~gg~~~~~~~  257 (267)
T 2gdz_A          220 GILDPPLIANGLITLIEDD--AL-NGAIMKITTSKGIHFQD  257 (267)
T ss_dssp             CCBCHHHHHHHHHHHHHCT--TC-SSCEEEEETTTEEEECC
T ss_pred             cCCCHHHHHHHHHHHhcCc--CC-CCcEEEecCCCcccccC
Confidence            4789999999999999865  35 68899999888877655

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=91.75  E-value=0.22  Score=31.62  Aligned_cols=41  Identities=10%  Similarity=-0.012  Sum_probs=31.3

Q ss_pred             ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccH
Q psy16546         16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSV   57 (111)
Q Consensus        16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~   57 (111)
                      ..+.+++.+|+|++++.++....... .+++|++.+|...+.
T Consensus       209 ~~~~~~~~~dvA~~~~~l~s~~~~~~-~G~~~~v~gG~~~~~  249 (256)
T 2d1y_A          209 ALRRLGKPEEVAEAVLFLASEKASFI-TGAILPVDGGMTASF  249 (256)
T ss_dssp             TTSSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTGGGBC
T ss_pred             CCCCCcCHHHHHHHHHHHhCchhcCC-CCCEEEECCCccccc
Confidence            45679999999999999987652223 577999998866554

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=91.51  E-value=0.34  Score=30.45  Aligned_cols=40  Identities=8%  Similarity=-0.138  Sum_probs=30.6

Q ss_pred             CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcc
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGT   55 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~   55 (111)
                      ...+.+.+.+|+|++++.++....... .+++|++.+|..+
T Consensus       207 ~~~~~~~~~~dva~~i~~l~s~~~~~~-tG~~i~vdgG~~~  246 (247)
T 3lyl_A          207 IPSGQIGEPKDIAAAVAFLASEEAKYI-TGQTLHVNGGMYM  246 (247)
T ss_dssp             STTCCCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTSSC
T ss_pred             CCCCCCcCHHHHHHHHHHHhCCCcCCc-cCCEEEECCCEec
Confidence            345678999999999999987653234 5889999877544

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=91.13  E-value=0.19  Score=31.65  Aligned_cols=37  Identities=11%  Similarity=0.111  Sum_probs=28.3

Q ss_pred             ccceeeeHHHHHHHHHHHHhhhhc-cccccceEEecCCC
Q psy16546         16 GIRDYIHVMDLAVGHVAALNKLQG-EHLKIKFYNLGTGQ   53 (111)
Q Consensus        16 ~~r~~v~v~D~a~a~~~~~~~~~~-~~~~~~~yni~~~~   53 (111)
                      ..+.+++++|+|++++.++..... .. .+++|+++++.
T Consensus       218 ~~~~~~~~~dva~~~~~l~~~~~~~~~-~G~~~~v~gg~  255 (258)
T 3afn_B          218 PMGRFGTAEEMAPAFLFFASHLASGYI-TGQVLDINGGQ  255 (258)
T ss_dssp             TTCSCBCGGGTHHHHHHHHCHHHHTTC-CSEEEEESTTS
T ss_pred             CCCcCCCHHHHHHHHHHHhCcchhccc-cCCEEeECCCc
Confidence            446799999999999999976522 23 47899998764

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=91.13  E-value=0.19  Score=30.50  Aligned_cols=33  Identities=6%  Similarity=-0.205  Sum_probs=25.0

Q ss_pred             CCccceeeeHHHHHHHHHHHHhhhhccccccceEEec
Q psy16546         14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLG   50 (111)
Q Consensus        14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~   50 (111)
                      +...+++++++|+|++++.++.+   .. .+++||+.
T Consensus       170 ~~~~~~~~~~~dva~~~~~~~~~---~~-~G~~~~vd  202 (202)
T 3d7l_A          170 FFEGFLPVPAAKVARAFEKSVFG---AQ-TGESYQVY  202 (202)
T ss_dssp             GSTTCCCBCHHHHHHHHHHHHHS---CC-CSCEEEEC
T ss_pred             hccccCCCCHHHHHHHHHHhhhc---cc-cCceEecC
Confidence            34567899999999999988854   33 56788863

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=90.92  E-value=0.19  Score=31.98  Aligned_cols=39  Identities=15%  Similarity=0.022  Sum_probs=29.7

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS   56 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s   56 (111)
                      .+.+.+.+|+|++++.++..+.... .+++|++.+|...|
T Consensus       224 ~~~~~~~~dvA~~~~~l~s~~~~~~-~G~~~~vdgG~~~s  262 (263)
T 3ai3_A          224 IKRFASPEELANFFVFLCSERATYS-VGSAYFVDGGMLKT  262 (263)
T ss_dssp             TCSCBCHHHHHHHHHHHTSTTCTTC-CSCEEEESTTCCCC
T ss_pred             CCCCcCHHHHHHHHHHHcCccccCC-CCcEEEECCCcccc
Confidence            3568999999999999987642123 57899999886654

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=90.17  E-value=0.37  Score=30.51  Aligned_cols=42  Identities=10%  Similarity=-0.205  Sum_probs=27.7

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHH
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQL   60 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~   60 (111)
                      ..+.+.+|+|++++.++....... .+..+++.++..++...+
T Consensus       221 ~~~~~~~dva~~~~~l~~~~~~~~-~G~~~~v~gg~~~~~~~~  262 (264)
T 2pd6_A          221 GHLGDPEDVADVVAFLASEDSGYI-TGTSVEVTGGLFMAENLY  262 (264)
T ss_dssp             CSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTC-------
T ss_pred             CCCCCHHHHHHHHHHHcCCcccCC-CCCEEEECCCceeccccC
Confidence            457899999999999987642234 678999998876655443

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=90.01  E-value=0.53  Score=30.21  Aligned_cols=41  Identities=7%  Similarity=-0.049  Sum_probs=31.1

Q ss_pred             CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS   56 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s   56 (111)
                      ...+.+.+.+|+|++++.++....... .|+++++.+|..+|
T Consensus       226 ~p~~r~~~pedvA~~v~~L~s~~~~~i-tG~~i~vdGG~~~s  266 (266)
T 3uxy_A          226 VPLGRIAEPEDIADVVLFLASDAARYL-CGSLVEVNGGKAVA  266 (266)
T ss_dssp             STTSSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTCCCC
T ss_pred             CCCCCCcCHHHHHHHHHHHhCchhcCC-cCCEEEECcCEeCC
Confidence            445678899999999999998653234 57899998876543

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=89.78  E-value=0.54  Score=29.88  Aligned_cols=37  Identities=14%  Similarity=-0.118  Sum_probs=28.3

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG   54 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~   54 (111)
                      .+.+++.+|+|++++.++....... .+.+|++.+|..
T Consensus       225 ~~~~~~~~dvA~~v~~l~s~~~~~~-tG~~~~vdgG~~  261 (263)
T 3ak4_A          225 LGRIEEPEDVADVVVFLASDAARFM-TGQGINVTGGVR  261 (263)
T ss_dssp             TCSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESSSSS
T ss_pred             CCCCcCHHHHHHHHHHHhCccccCC-CCCEEEECcCEe
Confidence            4568999999999999987652223 577999987754

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=89.70  E-value=0.46  Score=30.09  Aligned_cols=40  Identities=8%  Similarity=-0.046  Sum_probs=29.5

Q ss_pred             CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546         14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG   54 (111)
Q Consensus        14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~   54 (111)
                      +...+.|++++|+|++++.++....... .+++|++.+|..
T Consensus       214 ~~p~~~~~~~~dvA~~~~~l~s~~~~~~-tG~~~~vdgG~~  253 (255)
T 2q2v_A          214 KQPSLAFVTPEHLGELVLFLCSEAGSQV-RGAAWNVDGGWL  253 (255)
T ss_dssp             TCTTCCCBCHHHHHHHHHHHTSGGGTTC-CSCEEEESTTGG
T ss_pred             cCCCCCCcCHHHHHHHHHHHhCCccCCC-CCCEEEECCCcc
Confidence            3445679999999999999987642223 478999987643

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=89.54  E-value=0.41  Score=30.94  Aligned_cols=40  Identities=13%  Similarity=0.104  Sum_probs=30.6

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ   53 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~   53 (111)
                      ++...+.|.+++|+|++++.++....... .|.++++.+|.
T Consensus       239 ~~~p~~r~~~~edvA~~v~~L~s~~a~~i-tG~~i~vdGG~  278 (281)
T 3v2h_A          239 KGQPTKKFITVEQVASLALYLAGDDAAQI-TGTHVSMDGGW  278 (281)
T ss_dssp             -CCTTCSCBCHHHHHHHHHHHHSSGGGGC-CSCEEEESTTG
T ss_pred             hcCCCCCccCHHHHHHHHHHHcCCCcCCC-CCcEEEECCCc
Confidence            56677889999999999999987652234 57899998763

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=89.50  E-value=0.49  Score=29.56  Aligned_cols=35  Identities=9%  Similarity=0.010  Sum_probs=27.0

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG   52 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~   52 (111)
                      .+.+++++|+|++++.++....... .+++|++++|
T Consensus       212 ~~~~~~~~dva~~~~~l~~~~~~~~-~G~~~~v~gg  246 (248)
T 2pnf_A          212 LGRFGSPEEVANVVLFLCSELASYI-TGEVIHVNGG  246 (248)
T ss_dssp             TSSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTT
T ss_pred             CCCccCHHHHHHHHHHHhCchhhcC-CCcEEEeCCC
Confidence            3568999999999999987642233 5789999876

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=89.38  E-value=0.44  Score=30.18  Aligned_cols=42  Identities=10%  Similarity=-0.030  Sum_probs=31.1

Q ss_pred             CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccH
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSV   57 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~   57 (111)
                      ...+.+++.+|+|++++.++....... .|+++++.+|..++.
T Consensus       217 ~~~~~~~~~~dva~~~~~l~s~~~~~i-tG~~i~vdgG~~~~~  258 (261)
T 3n74_A          217 IPMGRLLKPDDLAEAAAFLCSPQASMI-TGVALDVDGGRSIGG  258 (261)
T ss_dssp             CTTSSCCCHHHHHHHHHHHTSGGGTTC-CSCEEEESTTTTC--
T ss_pred             CCcCCCcCHHHHHHHHHHHcCCcccCc-CCcEEEecCCcccCC
Confidence            345578999999999999987553234 688999998876654

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=89.30  E-value=0.54  Score=29.56  Aligned_cols=38  Identities=11%  Similarity=-0.071  Sum_probs=29.6

Q ss_pred             ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546         16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG   54 (111)
Q Consensus        16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~   54 (111)
                      ..+.|.+++|+|++++.++....... .|++|++.+|..
T Consensus       210 ~~~~~~~~~dva~~~~~l~s~~~~~~-tG~~~~vdgG~~  247 (249)
T 3f9i_A          210 PLGTYGIPEDVAYAVAFLASNNASYI-TGQTLHVNGGML  247 (249)
T ss_dssp             TTCSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTSS
T ss_pred             CCCCCcCHHHHHHHHHHHcCCccCCc-cCcEEEECCCEe
Confidence            45678999999999999998753234 578999987753

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=89.22  E-value=0.67  Score=29.45  Aligned_cols=42  Identities=10%  Similarity=-0.016  Sum_probs=31.7

Q ss_pred             CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccH
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSV   57 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~   57 (111)
                      ...+.+.+.+|+|++++.++.....-. .|+++++.+|...++
T Consensus       214 ~p~~r~~~~~dva~~~~~L~s~~~~~i-tG~~i~vdgG~~~~~  255 (256)
T 3gaf_A          214 TPLGRLGEAQDIANAALFLCSPAAAWI-SGQVLTVSGGGVQEL  255 (256)
T ss_dssp             CTTSSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTSCCC-
T ss_pred             CCCCCCCCHHHHHHHHHHHcCCcccCc-cCCEEEECCCccccC
Confidence            345678999999999999987653234 588999998877654

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=88.37  E-value=0.19  Score=30.63  Aligned_cols=25  Identities=12%  Similarity=-0.016  Sum_probs=20.0

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhh
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKL   37 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~   37 (111)
                      ++...+.+++++|+|++++.+++++
T Consensus       175 ~~~~~~~~~~~~dva~~~~~~~~~~  199 (207)
T 2yut_A          175 LGGPPKGALSPEEAARKVLEGLFRE  199 (207)
T ss_dssp             GTSCCTTCBCHHHHHHHHHHHHC--
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHhCC
Confidence            3456689999999999999999875

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=88.18  E-value=0.61  Score=28.97  Aligned_cols=36  Identities=8%  Similarity=-0.110  Sum_probs=28.6

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS   56 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s   56 (111)
                      +.+++++|+|++++.++.+.  .. .+++|++.+|..++
T Consensus       205 ~~~~~~~dva~~~~~l~~~~--~~-~G~~~~v~gG~~~~  240 (242)
T 1uay_A          205 PRLGRPEEYAALVLHILENP--ML-NGEVVRLDGALRMA  240 (242)
T ss_dssp             CSCCCHHHHHHHHHHHHHCT--TC-CSCEEEESTTCCCC
T ss_pred             ccCCCHHHHHHHHHHHhcCC--CC-CCcEEEEcCCeecC
Confidence            45889999999999999873  44 67899998876543

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=88.13  E-value=0.52  Score=29.40  Aligned_cols=36  Identities=8%  Similarity=-0.020  Sum_probs=27.3

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ   53 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~   53 (111)
                      .+.|++++|+|++++.++..+.... .+++|+++++.
T Consensus       207 ~~~~~~~~dva~~~~~l~~~~~~~~-~G~~~~v~gg~  242 (245)
T 2ph3_A          207 AGRFGRPEEVAEAVAFLVSEKAGYI-TGQTLCVDGGL  242 (245)
T ss_dssp             TCSCBCHHHHHHHHHHHTSGGGTTC-CSCEEEESTTC
T ss_pred             CCCCcCHHHHHHHHHHHhCcccccc-cCCEEEECCCC
Confidence            3568999999999999987642223 47899998763

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=87.67  E-value=0.24  Score=31.49  Aligned_cols=44  Identities=9%  Similarity=0.123  Sum_probs=33.3

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHH
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLR   62 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~   62 (111)
                      +.+...+|+|++++.++....... .|+++++.+|...++.++.+
T Consensus       225 ~~~~~pedva~~i~~l~s~~~~~~-tG~~i~vdgG~~~~~~~~~~  268 (271)
T 3ek2_A          225 KRNVTIEQVGNAGAFLLSDLASGV-TAEVMHVDSGFNAVVGGMAG  268 (271)
T ss_dssp             SSCCCHHHHHHHHHHHHSGGGTTC-CSEEEEESTTGGGBCCCC--
T ss_pred             CCCCCHHHHHHHHHHHcCcccCCe-eeeEEEECCCeeeehhhhhh
Confidence            457899999999999998653334 68899999988877666543

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=87.57  E-value=0.88  Score=28.62  Aligned_cols=35  Identities=9%  Similarity=-0.134  Sum_probs=27.1

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ   53 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~   53 (111)
                      +.+++.+|+|++++.++....... .+.+|+++++.
T Consensus       223 ~~~~~~~dva~~~~~l~~~~~~~~-~G~~~~v~gg~  257 (260)
T 3awd_A          223 GRVGQPDEVASVVQFLASDAASLM-TGAIVNVDAGF  257 (260)
T ss_dssp             SSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTT
T ss_pred             CCCCCHHHHHHHHHHHhCchhccC-CCcEEEECCce
Confidence            468999999999999987642233 57799998764

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=87.43  E-value=1  Score=28.93  Aligned_cols=40  Identities=13%  Similarity=-0.071  Sum_probs=29.9

Q ss_pred             ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc
Q psy16546         16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS   56 (111)
Q Consensus        16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s   56 (111)
                      ..+.+.+.+|+|++++.++....... .|+++++.+|..+|
T Consensus       231 p~~r~~~pedvA~~v~~L~s~~~~~i-tG~~i~vdGG~~~s  270 (270)
T 3ftp_A          231 PLGRLGSPEDIAHAVAFLASPQAGYI-TGTTLHVNGGMFMS  270 (270)
T ss_dssp             TTCSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTSSCC
T ss_pred             CCCCCCCHHHHHHHHHHHhCCCcCCc-cCcEEEECCCcccC
Confidence            44568899999999999986542234 57899998876543

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=87.30  E-value=0.39  Score=30.28  Aligned_cols=39  Identities=15%  Similarity=-0.013  Sum_probs=20.8

Q ss_pred             ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcc
Q psy16546         16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGT   55 (111)
Q Consensus        16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~   55 (111)
                      ..+.+...+|+|++++.++....... .+++|++.+|..+
T Consensus       213 ~~~~~~~~~dva~~~~~l~s~~~~~~-tG~~~~vdgG~~~  251 (253)
T 3qiv_A          213 PLSRMGTPDDLVGMCLFLLSDEASWI-TGQIFNVDGGQII  251 (253)
T ss_dssp             -------CCHHHHHHHHHHSGGGTTC-CSCEEEC------
T ss_pred             CCCCCCCHHHHHHHHHHHcCccccCC-CCCEEEECCCeec
Confidence            34557789999999999987653233 5889999987654

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=87.16  E-value=0.73  Score=28.51  Aligned_cols=36  Identities=11%  Similarity=0.047  Sum_probs=28.3

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcc
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGT   55 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~   55 (111)
                      .+.+.+.+|+|++++.++...  .. .+.++++.+|..+
T Consensus       187 ~~~~~~~~dvA~~~~~l~~~~--~~-tG~~i~vdgG~~~  222 (223)
T 3uce_A          187 VGKVGEASDIAMAYLFAIQNS--YM-TGTVIDVDGGALL  222 (223)
T ss_dssp             TCSCBCHHHHHHHHHHHHHCT--TC-CSCEEEESTTGGG
T ss_pred             CCCccCHHHHHHHHHHHccCC--CC-CCcEEEecCCeec
Confidence            346789999999999998853  44 6889999887654

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=86.48  E-value=1.3  Score=27.75  Aligned_cols=38  Identities=11%  Similarity=-0.121  Sum_probs=28.4

Q ss_pred             ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546         16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG   54 (111)
Q Consensus        16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~   54 (111)
                      ..+.+++.+|+|++++.++....... .+.+|++.+|..
T Consensus       212 ~~~~~~~~~dva~~~~~l~~~~~~~~-~G~~~~v~gG~~  249 (251)
T 1zk4_A          212 PMGHIGEPNDIAYICVYLASNESKFA-TGSEFVVDGGYT  249 (251)
T ss_dssp             TTSSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTGG
T ss_pred             CCCCCcCHHHHHHHHHHHcCcccccc-cCcEEEECCCcc
Confidence            34568999999999999997652223 578899987643

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=86.41  E-value=1  Score=28.75  Aligned_cols=39  Identities=8%  Similarity=-0.035  Sum_probs=29.2

Q ss_pred             CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS   56 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s   56 (111)
                      ...+.+.+++|+|++++.+.+..  .. .+++|++.+|...+
T Consensus       220 ~p~~r~~~~~dva~av~~L~~~~--~i-tG~~i~vdGG~~~~  258 (260)
T 3un1_A          220 HPVGRMGEIRDVVDAVLYLEHAG--FI-TGEILHVDGGQNAG  258 (260)
T ss_dssp             STTSSCBCHHHHHHHHHHHHHCT--TC-CSCEEEESTTGGGC
T ss_pred             CCCCCCcCHHHHHHHHHHhcccC--CC-CCcEEEECCCeecc
Confidence            35567889999999999884432  34 67899999876543

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=86.11  E-value=1.1  Score=28.60  Aligned_cols=36  Identities=11%  Similarity=-0.026  Sum_probs=27.3

Q ss_pred             ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546         16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG   52 (111)
Q Consensus        16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~   52 (111)
                      ....+.+++|+|++++.++....... .+++|++.+|
T Consensus       236 ~~~~~~~~edvA~~i~~l~s~~~~~~-tG~~i~vdgG  271 (272)
T 4e3z_A          236 PMQRAGMPEEVADAILYLLSPSASYV-TGSILNVSGG  271 (272)
T ss_dssp             TTSSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTT
T ss_pred             CcCCCcCHHHHHHHHHHHhCCccccc-cCCEEeecCC
Confidence            34557789999999999997653234 5789999876

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=85.99  E-value=0.26  Score=30.70  Aligned_cols=30  Identities=7%  Similarity=0.057  Sum_probs=23.1

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecC
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGT   51 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~   51 (111)
                      ..++|++|+|++++.++.++   . ..+.|++.+
T Consensus       198 ~~~~~~~dva~~~~~~~~~~---~-~~~~~~~~~  227 (242)
T 2bka_A          198 GHSVPVVTVVRAMLNNVVRP---R-DKQMELLEN  227 (242)
T ss_dssp             GTEEEHHHHHHHHHHHHTSC---C-CSSEEEEEH
T ss_pred             CcccCHHHHHHHHHHHHhCc---c-ccCeeEeeH
Confidence            35899999999999999875   2 346666553

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=85.45  E-value=1.5  Score=27.85  Aligned_cols=40  Identities=10%  Similarity=0.111  Sum_probs=30.3

Q ss_pred             CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546         14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG   54 (111)
Q Consensus        14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~   54 (111)
                      +...+.+.+.+|+|++++.++....... .++++++.+|..
T Consensus       223 ~~p~~r~~~p~dvA~~v~~L~s~~~~~i-tG~~i~vdGG~~  262 (264)
T 3ucx_A          223 GSDLKRLPTEDEVASAILFMASDLASGI-TGQALDVNCGEY  262 (264)
T ss_dssp             TSSSSSCCBHHHHHHHHHHHHSGGGTTC-CSCEEEESTTSS
T ss_pred             cCCcccCCCHHHHHHHHHHHcCccccCC-CCCEEEECCCcc
Confidence            3445678999999999999987653234 678999987754

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=85.27  E-value=0.95  Score=28.89  Aligned_cols=39  Identities=15%  Similarity=0.024  Sum_probs=30.4

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS   56 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s   56 (111)
                      .+.+.+.+|+|++++.++.....-. .|.++++.+|...|
T Consensus       227 ~~r~~~pedvA~~v~fL~s~~~~~i-tG~~i~vdGG~~~s  265 (267)
T 3t4x_A          227 IQRLIRPEEIAHLVTFLSSPLSSAI-NGSALRIDGGLVRS  265 (267)
T ss_dssp             SCSCBCTHHHHHHHHHHHSGGGTTC-CSCEEEESTTCSCS
T ss_pred             ccCccCHHHHHHHHHHHcCccccCc-cCCeEEECCCcccc
Confidence            4678999999999999987653234 67899999886655

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=85.15  E-value=0.92  Score=28.95  Aligned_cols=39  Identities=10%  Similarity=-0.127  Sum_probs=29.6

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS   56 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s   56 (111)
                      .+.+.+.+|+|++++.++....... .|.++++.+|..+|
T Consensus       231 ~~~~~~p~dvA~~v~~L~s~~~~~i-tG~~i~vdgG~~~s  269 (269)
T 3gk3_A          231 VGRLGRPDEVAALIAFLCSDDAGFV-TGADLAINGGMHMS  269 (269)
T ss_dssp             TSSCBCHHHHHHHHHHHTSTTCTTC-CSCEEEESTTSCCC
T ss_pred             cCCccCHHHHHHHHHHHhCCCcCCe-eCcEEEECCCEeCc
Confidence            3457789999999999987652234 68899999886653

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=85.10  E-value=0.95  Score=28.99  Aligned_cols=38  Identities=8%  Similarity=0.032  Sum_probs=29.2

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS   56 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s   56 (111)
                      +.+.+.+|+|++++.++.....-. .|.++++.+|..++
T Consensus       249 ~~~~~p~dva~~v~fL~s~~a~~i-tG~~i~vdGG~~~~  286 (287)
T 3pxx_A          249 TPYVEASDISNAVCFLASDESRYV-TGLQFKVDAGAMLK  286 (287)
T ss_dssp             CSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTGGGG
T ss_pred             CCCCCHHHHHhhHheecchhhcCC-CCceEeECchhhhc
Confidence            678999999999999987642234 57899998876543

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=84.78  E-value=1  Score=28.65  Aligned_cols=41  Identities=12%  Similarity=0.032  Sum_probs=29.0

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHH
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQ   59 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e   59 (111)
                      +.+.+.+|+|++++.++....... .+++|++.+|...+..+
T Consensus       218 ~~~~~~~dva~~v~~l~s~~~~~~-tG~~~~vdgG~~~~~~~  258 (261)
T 2wyu_A          218 RRNITQEEVGNLGLFLLSPLASGI-TGEVVYVDAGYHIMGME  258 (261)
T ss_dssp             SSCCCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTGGGBC--
T ss_pred             CCCCCHHHHHHHHHHHcChhhcCC-CCCEEEECCCccccCCC
Confidence            347899999999999987542223 57899999886655433

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=84.44  E-value=1.3  Score=28.04  Aligned_cols=38  Identities=11%  Similarity=-0.102  Sum_probs=28.3

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcc
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGT   55 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~   55 (111)
                      .+.+.+.+|+|++++.++....... .+.++++.+|...
T Consensus       219 ~~~~~~~~dvA~~v~~l~s~~~~~~-tG~~~~vdgG~~~  256 (260)
T 2ae2_A          219 LRRMGEPKELAAMVAFLCFPAASYV-TGQIIYVDGGLMA  256 (260)
T ss_dssp             TCSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTGGG
T ss_pred             CCCCCCHHHHHHHHHHHcCccccCC-CCCEEEECCCccc
Confidence            3568999999999999887542223 5788999877544

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=84.15  E-value=1.6  Score=27.48  Aligned_cols=38  Identities=8%  Similarity=-0.057  Sum_probs=28.7

Q ss_pred             CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ   53 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~   53 (111)
                      ...+.+.+.+|+|++++.++....... .+++|++.+|.
T Consensus       207 ~p~~r~~~~~dva~~v~~l~s~~~~~i-tG~~i~vdgG~  244 (246)
T 3osu_A          207 IPLARFGQDTDIANTVAFLASDKAKYI-TGQTIHVNGGM  244 (246)
T ss_dssp             CTTCSCBCHHHHHHHHHHHTSGGGTTC-CSCEEEESTTS
T ss_pred             CCCCCCcCHHHHHHHHHHHhCccccCC-CCCEEEeCCCc
Confidence            345568899999999999987653233 57899998764

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=83.95  E-value=1.3  Score=27.71  Aligned_cols=35  Identities=6%  Similarity=-0.074  Sum_probs=26.6

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ   53 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~   53 (111)
                      +.+++++|+|++++.++....... .+.++++.+|.
T Consensus       217 ~~~~~~~dva~~~~~l~~~~~~~~-~G~~~~v~gG~  251 (254)
T 2wsb_A          217 GRCGEPSEIAAAALFLASPAASYV-TGAILAVDGGY  251 (254)
T ss_dssp             SSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTG
T ss_pred             CCCCCHHHHHHHHHHHhCcccccc-cCCEEEECCCE
Confidence            568999999999999987642233 57889888663

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=83.87  E-value=1.1  Score=28.16  Aligned_cols=36  Identities=11%  Similarity=0.036  Sum_probs=27.8

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG   54 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~   54 (111)
                      +.+++.+|+|++++.++....... .+++|++.+|..
T Consensus       228 ~~~~~~~dva~~~~~l~~~~~~~~-~G~~~~v~gG~~  263 (265)
T 1h5q_A          228 NRFAQPEEMTGQAILLLSDHATYM-TGGEYFIDGGQL  263 (265)
T ss_dssp             SSCBCGGGGHHHHHHHHSGGGTTC-CSCEEEECTTGG
T ss_pred             cCCCCHHHHHHHHHhhccCchhcC-cCcEEEecCCEe
Confidence            458899999999999987652234 678999987753

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=83.87  E-value=1.2  Score=28.70  Aligned_cols=38  Identities=8%  Similarity=-0.070  Sum_probs=29.1

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcc
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGT   55 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~   55 (111)
                      .+.+.+.+|+|++++.++....... .|+++++.+|...
T Consensus       235 ~~r~~~pedva~~v~~L~s~~a~~i-tG~~i~vdGG~~~  272 (273)
T 3uf0_A          235 AGRWATPEDMVGPAVFLASDAASYV-HGQVLAVDGGWLA  272 (273)
T ss_dssp             TSSCBCGGGGHHHHHHHHSGGGTTC-CSCEEEESTTGGG
T ss_pred             CCCCCCHHHHHHHHHHHhCchhcCC-cCCEEEECcCccC
Confidence            3568899999999999988653234 6789999887554

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=83.85  E-value=1.2  Score=28.16  Aligned_cols=41  Identities=7%  Similarity=0.024  Sum_probs=31.2

Q ss_pred             CccceeeeHHHHHHHHHHHHhh-hhccccccceEEecCCCccc
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNK-LQGEHLKIKFYNLGTGQGTS   56 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~-~~~~~~~~~~yni~~~~~~s   56 (111)
                      ...+.+++.+|+|++++.++.. ..... .|.++++.+++..+
T Consensus       205 ~~~~~~~~~~dva~~i~~l~~~~~~~~~-tG~~i~v~~g~~~~  246 (251)
T 3orf_A          205 ANFDDWTPLSEVAEKLFEWSTNSDSRPT-NGSLVKFETKSKVT  246 (251)
T ss_dssp             SCGGGSBCHHHHHHHHHHHHHCGGGCCC-TTCEEEEEEETTEE
T ss_pred             ccccccCCHHHHHHHHHHHhcCccccCC-cceEEEEecCCccc
Confidence            4566789999999999999988 42234 67889988776543

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=83.72  E-value=1.3  Score=28.29  Aligned_cols=36  Identities=11%  Similarity=-0.076  Sum_probs=29.5

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS   56 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s   56 (111)
                      +.+.+.+|+|++++.++...  .. .|.++++.+|..++
T Consensus       244 ~~~~~pedvA~~v~~l~s~~--~~-tG~~i~vdGG~~~~  279 (281)
T 3ppi_A          244 KRLGTPDEFADAAAFLLTNG--YI-NGEVMRLDGAQRFT  279 (281)
T ss_dssp             SSCBCHHHHHHHHHHHHHCS--SC-CSCEEEESTTCCCC
T ss_pred             CCCCCHHHHHHHHHHHHcCC--Cc-CCcEEEECCCcccC
Confidence            56889999999999999864  45 68899998887654

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=83.64  E-value=1.4  Score=28.34  Aligned_cols=36  Identities=14%  Similarity=0.098  Sum_probs=27.4

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ   53 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~   53 (111)
                      .+.+++.+|+|++++.++..+.... .+.+|++.+|.
T Consensus       239 ~~r~~~~~dvA~~v~~l~s~~~~~~-tG~~~~vdGG~  274 (277)
T 2rhc_B          239 IGRYVQPSEVAEMVAYLIGPGAAAV-TAQALNVCGGL  274 (277)
T ss_dssp             TSSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTC
T ss_pred             CCCCcCHHHHHHHHHHHhCchhcCC-CCcEEEECCCc
Confidence            3568999999999999987652234 57889998763

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=83.29  E-value=1.4  Score=27.90  Aligned_cols=40  Identities=8%  Similarity=-0.205  Sum_probs=28.8

Q ss_pred             ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc
Q psy16546         16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS   56 (111)
Q Consensus        16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s   56 (111)
                      ..+.+.+.+|+|++++.++....... .|+++++.+|-...
T Consensus       215 p~~r~~~~~dva~~v~~l~s~~~~~i-tG~~i~vdGG~~~~  254 (264)
T 3i4f_A          215 PIGRSGTGEDIARTISFLCEDDSDMI-TGTIIEVTGAVDVI  254 (264)
T ss_dssp             ---CCCCHHHHHHHHHHHHSGGGTTC-CSCEEEESCSCCCC
T ss_pred             CCCCCcCHHHHHHHHHHHcCcccCCC-CCcEEEEcCceeec
Confidence            34567899999999999998653234 58899998876543

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=83.22  E-value=2.1  Score=27.50  Aligned_cols=41  Identities=5%  Similarity=-0.052  Sum_probs=31.0

Q ss_pred             CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS   56 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s   56 (111)
                      ...+.+.+.+|+|++++.++.....-. .|+++++.+|...+
T Consensus       232 ~~~~r~~~pedvA~~v~~L~s~~~~~i-tG~~i~vdGG~~~~  272 (277)
T 4dqx_A          232 AVMDRMGTAEEIAEAMLFLASDRSRFA-TGSILTVDGGSSIG  272 (277)
T ss_dssp             STTCSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESSSSSSC
T ss_pred             CcccCCcCHHHHHHHHHHHhCCccCCC-cCCEEEECCchhhh
Confidence            345568899999999999987653234 58899999886654

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=82.91  E-value=2.1  Score=27.75  Aligned_cols=41  Identities=12%  Similarity=-0.030  Sum_probs=30.7

Q ss_pred             CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcc
Q psy16546         14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGT   55 (111)
Q Consensus        14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~   55 (111)
                      ....+.+...+|+|++++.++.....-. .++++++.+|..+
T Consensus       253 ~~p~~r~~~p~dvA~~v~~L~s~~~~~i-tG~~i~vdGG~~l  293 (294)
T 3r3s_A          253 QTPMKRAGQPAELAPVYVYLASQESSYV-TAEVHGVCGGEHL  293 (294)
T ss_dssp             TSTTSSCBCGGGGHHHHHHHHSGGGTTC-CSCEEEESTTCCC
T ss_pred             cCCCCCCcCHHHHHHHHHHHhCccccCC-CCCEEEECCCccC
Confidence            3445668899999999999987653234 5789999987654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=82.84  E-value=1.8  Score=27.46  Aligned_cols=38  Identities=3%  Similarity=-0.061  Sum_probs=28.7

Q ss_pred             CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ   53 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~   53 (111)
                      ...+.+.+.+|+|++++.++....... .|+++++.+|.
T Consensus       228 ~~~~r~~~~~dva~~i~~l~s~~~~~~-tG~~i~vdgG~  265 (266)
T 3o38_A          228 EAFGRAAEPWEVAATIAFLASDYSSYM-TGEVVSVSSQR  265 (266)
T ss_dssp             CTTSSCCCHHHHHHHHHHHHSGGGTTC-CSCEEEESSCC
T ss_pred             CCcCCCCCHHHHHHHHHHHcCccccCc-cCCEEEEcCCc
Confidence            345568899999999999988653334 67889988763

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=82.61  E-value=2.1  Score=27.64  Aligned_cols=40  Identities=5%  Similarity=-0.089  Sum_probs=30.8

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccH
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSV   57 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~   57 (111)
                      .+.+.+.+|+|++++.++.....-. .|.++++.+|..++.
T Consensus       218 ~~r~~~pedvA~~v~~L~s~~a~~i-tG~~i~vdGG~~~~~  257 (280)
T 3tox_A          218 LKRIARPEEIAEAALYLASDGASFV-TGAALLADGGASVTK  257 (280)
T ss_dssp             TSSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTGGGCC
T ss_pred             cCCCcCHHHHHHHHHHHhCccccCC-cCcEEEECCCccccc
Confidence            3568899999999999998653234 688999998866554

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=82.29  E-value=1.9  Score=27.04  Aligned_cols=38  Identities=11%  Similarity=-0.036  Sum_probs=28.4

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcc
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGT   55 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~   55 (111)
                      .+.+.+.+|+|++++.++....... .|+++++.+|..+
T Consensus       218 ~~~~~~~~dva~~~~~l~s~~~~~~-tG~~i~vdgG~~~  255 (256)
T 3ezl_A          218 VRRLGSPDEIGSIVAWLASEESGFS-TGADFSLNGGLHM  255 (256)
T ss_dssp             TSSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTSCC
T ss_pred             CCCCcCHHHHHHHHHHHhCCcccCC-cCcEEEECCCEeC
Confidence            3457899999999999987543234 6789999877543

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=82.17  E-value=1.8  Score=27.55  Aligned_cols=36  Identities=6%  Similarity=-0.087  Sum_probs=27.1

Q ss_pred             cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546         17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ   53 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~   53 (111)
                      .+.+++.+|+|++++.++....... .+.++++.++.
T Consensus       211 ~~~~~~p~dvA~~v~~l~s~~~~~~-tG~~i~vdGG~  246 (264)
T 2dtx_A          211 MQRIGKPQEVASAVAFLASREASFI-TGTCLYVDGGL  246 (264)
T ss_dssp             TSSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTG
T ss_pred             CCCCcCHHHHHHHHHHHhCchhcCC-CCcEEEECCCc
Confidence            3568999999999999987652234 57788888764

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=82.10  E-value=1.9  Score=27.69  Aligned_cols=35  Identities=9%  Similarity=-0.056  Sum_probs=26.7

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ   53 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~   53 (111)
                      +.+++.+|+|++++.++....... .+++|++.+|.
T Consensus       249 ~~~~~~~dvA~~~~~l~~~~~~~~-~G~~i~v~gG~  283 (285)
T 2c07_A          249 GRMGTPEEVANLACFLSSDKSGYI-NGRVFVIDGGL  283 (285)
T ss_dssp             SSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTS
T ss_pred             CCCCCHHHHHHHHHHHhCCCcCCC-CCCEEEeCCCc
Confidence            458999999999999987652223 57889988764

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=81.84  E-value=2.1  Score=27.33  Aligned_cols=35  Identities=9%  Similarity=-0.082  Sum_probs=27.6

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ   53 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~   53 (111)
                      +.+.+.+|+|++++.++....... .|+++++.+|.
T Consensus       241 ~~~~~p~dvA~~v~~l~s~~~~~i-tG~~i~vdGG~  275 (278)
T 3sx2_A          241 VEVLAPEDVANAVAWLVSDQARYI-TGVTLPVDAGF  275 (278)
T ss_dssp             CSSBCHHHHHHHHHHHTSGGGTTC-CSCEEEESTTT
T ss_pred             cCcCCHHHHHHHHHHHhCcccccc-cCCEEeECCCc
Confidence            678999999999999987653234 67899998764

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=81.78  E-value=0.96  Score=29.46  Aligned_cols=48  Identities=6%  Similarity=-0.201  Sum_probs=33.9

Q ss_pred             ceeeeHHHHHHHHHHHHhhh-hccccccceEEecCCCcccHHHHHHHHHH
Q psy16546         18 RDYIHVMDLAVGHVAALNKL-QGEHLKIKFYNLGTGQGTSVLQLLRTFER   66 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~-~~~~~~~~~yni~~~~~~s~~e~~~~i~~   66 (111)
                      +.+...+|+|++++.++... .... .+.++++.+|......+.+..+.+
T Consensus       245 ~r~~~pedvA~~v~~l~s~~~~~~i-tG~~i~vdGG~~~~~~~~~~~~~~  293 (297)
T 1xhl_A          245 GHCGKPEEIANIIVFLADRNLSSYI-IGQSIVADGGSTLVMGMQTHDLMS  293 (297)
T ss_dssp             SSCBCHHHHHHHHHHHHCHHHHTTC-CSCEEEESTTGGGCCGGGGSCHHH
T ss_pred             CCCcCHHHHHHHHHHHhCCcccCCc-cCcEEEECCCccccccccccchhh
Confidence            45889999999999998754 2234 578999988876665554444443

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=81.70  E-value=2.2  Score=27.08  Aligned_cols=41  Identities=15%  Similarity=-0.058  Sum_probs=28.4

Q ss_pred             CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS   56 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s   56 (111)
                      ...+.+.+.+|+|++++.++.....-. .|.+|++.+|...+
T Consensus       211 ~p~~r~~~pedva~~v~~L~s~~~~~i-tG~~i~vdGg~~~~  251 (259)
T 3edm_A          211 TSLKREGSSEDVAGLVAFLASDDAAYV-TGACYDINGGVLFS  251 (259)
T ss_dssp             ----CCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESBCSSBC
T ss_pred             CCCCCCcCHHHHHHHHHHHcCccccCc-cCCEEEECCCcCCC
Confidence            344567899999999999987653234 57899998775544

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=81.57  E-value=2.5  Score=26.45  Aligned_cols=37  Identities=8%  Similarity=-0.033  Sum_probs=28.2

Q ss_pred             ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546         16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ   53 (111)
Q Consensus        16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~   53 (111)
                      ..+.+.+.+|+|++++.++....... .++++++.+|.
T Consensus       205 p~~r~~~p~dvA~~v~~l~s~~~~~i-tG~~i~vdGG~  241 (244)
T 4e4y_A          205 PLNRIAQPQEIAELVIFLLSDKSKFM-TGGLIPIDGGY  241 (244)
T ss_dssp             TTSSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTG
T ss_pred             CCCCCcCHHHHHHHHHHHhcCccccc-cCCeEeECCCc
Confidence            34568899999999999998653234 57889988764

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=81.32  E-value=2.2  Score=26.91  Aligned_cols=36  Identities=8%  Similarity=-0.083  Sum_probs=27.1

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG   54 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~   54 (111)
                      +.+.+.+|+|++++.++....... .+.+|++.+|..
T Consensus       210 ~~~~~~~dvA~~i~~l~s~~~~~~-tG~~~~vdgG~~  245 (249)
T 1o5i_A          210 RRMAKPEEIASVVAFLCSEKASYL-TGQTIVVDGGLS  245 (249)
T ss_dssp             SSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTCC
T ss_pred             CCCcCHHHHHHHHHHHcCccccCC-CCCEEEECCCcc
Confidence            458899999999999987642223 578899887643

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=81.08  E-value=2  Score=26.99  Aligned_cols=36  Identities=6%  Similarity=-0.276  Sum_probs=27.3

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG   54 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~   54 (111)
                      +.+++.+|+|++++.++....... .++++++.++..
T Consensus       216 ~~~~~~~dva~~~~~l~~~~~~~~-~G~~~~v~gg~~  251 (261)
T 1gee_A          216 GYIGEPEEIAAVAAWLASSEASYV-TGITLFADGGMT  251 (261)
T ss_dssp             SSCBCHHHHHHHHHHHHSGGGTTC-CSCEEEESTTGG
T ss_pred             CCCcCHHHHHHHHHHHhCccccCC-CCcEEEEcCCcc
Confidence            568899999999999987542233 577899887754

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=80.92  E-value=2.4  Score=27.44  Aligned_cols=41  Identities=10%  Similarity=-0.056  Sum_probs=30.9

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG   54 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~   54 (111)
                      .+...+.+.+.+|+|++++.++....... .++++++.+|..
T Consensus       248 ~~~p~~r~~~p~dvA~~v~~L~s~~~~~i-tG~~i~vdGG~~  288 (291)
T 3ijr_A          248 SNVPMQRPGQPYELAPAYVYLASSDSSYV-TGQMIHVNGGVI  288 (291)
T ss_dssp             TTSTTSSCBCGGGTHHHHHHHHSGGGTTC-CSCEEEESSSCC
T ss_pred             ccCCCCCCcCHHHHHHHHHHHhCCccCCC-cCCEEEECCCcc
Confidence            44556778999999999999987653234 678999987754

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=80.47  E-value=2.5  Score=27.00  Aligned_cols=38  Identities=11%  Similarity=-0.061  Sum_probs=28.6

Q ss_pred             cceeeeHHHHHHHHHHHHhhh-hccccccceEEecCCCcc
Q psy16546         17 IRDYIHVMDLAVGHVAALNKL-QGEHLKIKFYNLGTGQGT   55 (111)
Q Consensus        17 ~r~~v~v~D~a~a~~~~~~~~-~~~~~~~~~yni~~~~~~   55 (111)
                      .+.+.+.+|+|++++.++..+ ..-. .|+++++.+|..+
T Consensus       230 ~~r~~~~~dvA~~v~~l~s~~~~~~i-tG~~i~vdGG~~~  268 (269)
T 4dmm_A          230 LGRYGEAAEVAGVVRFLAADPAAAYI-TGQVINIDGGLVM  268 (269)
T ss_dssp             TSSCBCHHHHHHHHHHHHHCGGGGGC-CSCEEEESTTSCC
T ss_pred             CCCCCCHHHHHHHHHHHhCCcccCCC-cCCEEEECCCeec
Confidence            356889999999999999863 1123 5789999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	111
d1gy8a_	383	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	8e-27
d1ek6a_	346	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	1e-23
d1udca_	338	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	2e-23
d1z45a2	347	c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep	2e-19
d2b69a1	312	c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1	2e-18
d1r6da_	322	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	1e-17
d1orra_	338	c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella	8e-17
d1kewa_	361	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	1e-16
d1sb8a_	341	c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W	7e-13
d2c5aa1	363	c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T	1e-12
d1rpna_	321	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo	3e-12
d1db3a_	357	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric	6e-11
d1y1pa1	342	c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo	2e-10
d1e6ua_	315	c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras	4e-10
d1oc2a_	346	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	9e-10
d1t2aa_	347	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H	1e-07
d1xgka_	350	c.2.1.2 (A:) Negative transcriptional regulator Nm	2e-06
d1qyda_	312	c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {	2e-06
d1n7ha_	339	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr	3e-06
d1i24a_	393	c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1	5e-06
d1rkxa_	356	c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia	3e-05
d2q46a1	252	c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (	5e-05
d2blla1	342	c.2.1.2 (A:316-657) Polymyxin resistance protein A	5e-04

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

 Score = 99.5 bits (246), Expect = 8e-27
 Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 5/112 (4%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKF-----YNLGTGQGTS 56
           + +FG DY T DGT +RDY+HV DLA  H+ AL+ ++      K      +NLGT +G S
Sbjct: 254 MPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYS 313

Query: 57  VLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEK 108
           V +++    + TG P+P     RREGD   + A +D A+  LGW  +    +
Sbjct: 314 VREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLE 365

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.5 bits (223), Expect = 1e-23
 Identities = 63/110 (57%), Positives = 83/110 (75%), Gaps = 1/110 (0%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + VFG DY TEDGTG+RDYIHV+DLA GH+AAL KL+ +    + YNLGTG G SVLQ++
Sbjct: 223 LNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQC-GCRIYNLGTGTGYSVLQMV 281

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           +  E+ +GK +PY V ARREGD+ + YAN  LAQ ELGW+A   +++MC+
Sbjct: 282 QAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCE 331

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

 Score = 90.0 bits (222), Expect = 2e-23
 Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL  +   +  YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKP-GVHIYNLGAGVGNSVLDVV 273

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             F +  GKPV Y    RREGD+ + +A+   A REL W    T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.9 bits (193), Expect = 2e-19
 Identities = 49/113 (43%), Positives = 71/113 (62%), Gaps = 3/113 (2%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKF---YNLGTGQGTSVL 58
           + +FG DY + DGT IRDYIHV+DLA GH+AAL  L+  +        +NLG+G+G++V 
Sbjct: 220 LYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVF 279

Query: 59  QLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           ++   F + +G  +PY V  RR GD++++ A  D A+REL W     VE  CK
Sbjct: 280 EVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCK 332

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (186), Expect = 2e-18
 Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 11/110 (10%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           +TV+G       G+  R + +V DL  G VA +N            NLG  +  ++L+  
Sbjct: 200 LTVYG------SGSQTRAFQYVSDLVNGLVALMNSNVSSP-----VNLGNPEEHTILEFA 248

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           +  + + G        +  + D      +   A+  LGW     +E+   
Sbjct: 249 QLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLN 298

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 74.1 bits (181), Expect = 1e-17
 Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 11/111 (9%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + ++G      DG  +R+++H  D   G    L   +      + Y++G G   +  +L 
Sbjct: 205 LPLYG------DGANVREWVHTDDHCRGIALVLAGGRAG----EIYHIGGGLELTNRELT 254

Query: 62  RTFERVTGKPVPYIVE-ARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
                  G     + + A R+G  +    +    +RELG+  + +      
Sbjct: 255 GILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGLA 305

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

 Score = 71.7 bits (174), Expect = 8e-17
 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 6/110 (5%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
            T+ G      +G  +RD +H  D+   +  AL  +                  S+L+L 
Sbjct: 226 FTISG------NGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELF 279

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           +  E      + +     RE D     A+       + WS + + +   +
Sbjct: 280 KLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPKVSAKDGVQ 329

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 71.7 bits (175), Expect = 1e-16
 Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 18/118 (15%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + ++G       G  IRD+++V D A      + + +      + YN+G       L ++
Sbjct: 221 LPIYG------KGDQIRDWLYVEDHARALHMVVTEGKAG----ETYNIGGHNEKKNLDVV 270

Query: 62  RTF--------ERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
            T          + T         A R G       +     RELGW    T E   +
Sbjct: 271 FTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIR 328

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 60.7 bits (146), Expect = 7e-13
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 13/115 (11%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
           + + G      DG   RD+ ++ +    ++ A         ++  YN+  G  TS+ QL 
Sbjct: 224 VYING------DGETSRDFCYIENTVQANLLAATAGLDARNQV--YNIAVGGRTSLNQLF 275

Query: 62  RTFERVTGK-----PVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
                   +         +    REGD+    A+   A + LG++ +  V     
Sbjct: 276 FALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPKYDVSAGVA 330

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 60.3 bits (145), Expect = 1e-12
 Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 13  DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV 72
           DG   R +  + +   G +        E       N+G+ +  S+ ++         K +
Sbjct: 226 DGLQTRSFTFIDECVEGVLRLTKSDFREP-----VNIGSDEMVSMNEMAEMVLSFEEKKL 280

Query: 73  PYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           P I        +    ++ +L + +LGW+    +++  +
Sbjct: 281 P-IHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLR 318

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 59.2 bits (142), Expect = 3e-12
 Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 9/103 (8%)

Query: 13  DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV 72
           +    RD+    D        L + + +      Y + TG  T+V  + +      G   
Sbjct: 211 NVDAKRDWGFAGDYVEAMWLMLQQDKADD-----YVVATGVTTTVRDMCQIAFEHVGLDY 265

Query: 73  PYIVE----ARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
              ++      R  ++  +  N   AQR LGW  R +++++ +
Sbjct: 266 RDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIR 308

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

 Score = 55.2 bits (132), Expect = 6e-11
 Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 36/130 (27%)

Query: 13  DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV 72
           +   +RD+ H  D        L + Q E      + + TG   SV Q +       G  +
Sbjct: 219 NMDSLRDWGHAKDYVKMQWMMLQQEQPED-----FVIATGVQYSVRQFVEMAAAQLGIKL 273

Query: 73  PYIVE-------------------------------ARREGDIVSMYANTDLAQRELGWS 101
            +                                    R  ++ ++  +   A  +LGW 
Sbjct: 274 RFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWK 333

Query: 102 ARCTVEKMCK 111
              T+ +M  
Sbjct: 334 PEITLREMVS 343

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

 Score = 54.0 bits (128), Expect = 2e-10
 Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 5/112 (4%)

Query: 1   MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQL 60
           M    G           + Y+  +D+ + H+  L   Q      +    GT        +
Sbjct: 227 MSLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQ----IERRRVYGTAGTFDWNTV 282

Query: 61  LRTF-ERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
           L TF +    K  P     + +       A +    + LG     ++E+  K
Sbjct: 283 LATFRKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIK 334

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

 Score = 53.0 bits (126), Expect = 4e-10
 Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 13  DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFY-----NLGTGQGTSVLQLLRTFERV 67
            GT +R+++HV D+A   +  +       L+         N+GTG   ++ +L +T  +V
Sbjct: 203 SGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKV 262

Query: 68  TGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
            G     + +A +         +      +LGW    ++E    
Sbjct: 263 VGYKGRVVFDASKPDGTPRKLLDVTRL-HQLGWYHEISLEAGLA 305

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 51.9 bits (123), Expect = 9e-10
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 10/111 (9%)

Query: 2   ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
             ++G      +G  +RD+IH  D + G  A L K +     +   + G      VL+L 
Sbjct: 213 PKLYG------EGKNVRDWIHTNDHSTGVWAILTKGRMGETYLIGAD-GEKNNKEVLEL- 264

Query: 62  RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCT-VEKMCK 111
              E++      Y     R G  +    +    + ELGW+ + T   +  +
Sbjct: 265 -ILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLE 314

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 1e-07
 Identities = 14/121 (11%), Positives = 39/121 (32%), Gaps = 10/121 (8%)

Query: 1   MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEH--------LKIKFYNLGT- 51
                G      D    +DY+  M L + +    + +            ++  F ++G  
Sbjct: 214 ECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKT 273

Query: 52  -GQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMC 110
                     +   +      V   ++  R  ++  +  +   A+++L W  R   +++ 
Sbjct: 274 IVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELV 333

Query: 111 K 111
           +
Sbjct: 334 R 334

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

 Score = 42.7 bits (99), Expect = 2e-06
 Identities = 9/72 (12%), Positives = 19/72 (26%), Gaps = 2/72 (2%)

Query: 4   VFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRT 63
            F      +    +       D+    +        +        L   +  S +Q+   
Sbjct: 172 TFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKW-NGHRIALT-FETLSPVQVCAA 229

Query: 64  FERVTGKPVPYI 75
           F R   + V Y+
Sbjct: 230 FSRALNRRVTYV 241

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

 Score = 42.5 bits (98), Expect = 2e-06
 Identities = 10/75 (13%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 1   MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQL 60
           M+          DG     ++   D+    + +++    + L    Y        S  ++
Sbjct: 174 MMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSID--DPQTLNKTMYIRPPMNILSQKEV 231

Query: 61  LRTFERVTGKPVPYI 75
           ++ +ER++ + +  I
Sbjct: 232 IQIWERLSEQNLDKI 246

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 42.0 bits (97), Expect = 3e-06
 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 1/99 (1%)

Query: 13  DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV 72
           +    RD+    D        L + + +   +     G      +              V
Sbjct: 221 NLQASRDWGFAGDYVEAMWLMLQQEKPDD-YVVATEEGHTVEEFLDVSFGYLGLNWKDYV 279

Query: 73  PYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
                  R  ++ ++  +   A+  LGW  +   EK+ K
Sbjct: 280 EIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEKLVK 318

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.5 bits (95), Expect = 5e-06
 Identities = 18/116 (15%), Positives = 33/116 (28%), Gaps = 14/116 (12%)

Query: 1   MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQL 60
            +TV+G    T     IRD +  +++A+ +                      +  SV +L
Sbjct: 252 PLTVYGKGGQTRGYLDIRDTVQCVEIAIANP--------AKAGEFRVFNQFTEQFSVNEL 303

Query: 61  LRTFERVTGK-----PVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
                +   K         +   R E +     A       ELG       + +  
Sbjct: 304 ASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKL-MELGLEPHYLSDSLLD 358

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

 Score = 39.1 bits (89), Expect = 3e-05
 Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 64  FERVTGKPVPYIVEA-RREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
             +  G+   + ++      +   +  +   A+ +LGW  R  +    +
Sbjct: 278 MVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPRWNLNTTLE 326

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.3 bits (87), Expect = 5e-05
 Identities = 9/57 (15%), Positives = 18/57 (31%)

Query: 14  GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGK 70
                  +   D+A   + AL   + ++      +   G  T        F +VT +
Sbjct: 195 LQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 251

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

 Score = 35.7 bits (80), Expect = 5e-04
 Identities = 11/114 (9%), Positives = 23/114 (20%), Gaps = 15/114 (13%)

Query: 13  DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV 72
            G   R +  + D        +                     S+ +L         K  
Sbjct: 215 GGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHP 274

Query: 73  PYI---------------VEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
                                +   D+     +   A R L W  +  +++   
Sbjct: 275 LRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETID 328

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	111
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.89
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.88
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	99.86
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	99.86
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.86
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.83
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	99.83
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	99.83
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	99.82
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	99.81
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	99.8
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	99.79
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.78
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.76
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	99.73
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	99.68
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	99.68
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	99.67
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	99.64
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	99.62
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	99.53
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	99.42
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	99.25
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	99.04
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	99.03
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	98.4
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	98.1
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	94.86
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	93.46
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	93.09

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.9e-23  Score=137.44  Aligned_cols=110  Identities=57%  Similarity=1.020  Sum_probs=100.1

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR   80 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~   80 (111)
                      ++.++|.+..+.+|.+.|||+|++|+|+++..++....... .+++||+++++.+|+.|+++.+.+.++.+.+....|.+
T Consensus       222 ~i~i~g~~~~~~~g~~~Rdfi~v~D~a~~~~~~~~~~~~~~-~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~~~~~~~~  300 (346)
T d1ek6a_         222 ALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQC-GCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARR  300 (346)
T ss_dssp             CEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTTC-CEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCC
T ss_pred             cEEEcCCcccCCCCCeeEeEEEEEeccchhhhhcccccccc-CceEEEeCCCCcccHHHHHHHHHHHhCCCCCeEECCCC
Confidence            46788888888999999999999999999999987764445 67899999999999999999999999999999999999


Q ss_pred             CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         81 EGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        81 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +++...+++|++|+++.|||+|.++++|+|+
T Consensus       301 ~~e~~~~~~d~~k~~~~lgw~p~~slee~I~  331 (346)
T d1ek6a_         301 EGDVAACYANPSLAQEELGWTAALGLDRMCE  331 (346)
T ss_dssp             TTCCSEECBCCHHHHHTTCCCCCCCHHHHHH
T ss_pred             CCCCCEeeECHHHHHHHHCCCcCCCHHHHHH
Confidence            9998888999999999999999999999974

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.88  E-value=2.1e-22  Score=135.60  Aligned_cols=109  Identities=38%  Similarity=0.661  Sum_probs=98.0

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhc------cccccceEEecCCCcccHHHHHHHHHHHhCCCccc
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQG------EHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPY   74 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~------~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~   74 (111)
                      +++++|.....++|++.|||+||+|+|++++.++++...      .. .+++||+++++++|+.|+++.+.+.++.+.++
T Consensus       253 ~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~-~~~i~Ni~s~~~~s~~el~~~i~~~~~~~~~~  331 (383)
T d1gy8a_         253 RMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSK-YFSVFNLGTSRGYSVREVIEVARKTTGHPIPV  331 (383)
T ss_dssp             CEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGG-SEEEEEESCSCCEEHHHHHHHHHHHHCCCCCE
T ss_pred             ceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhcccccccccc-CccEEEeCCCCceeHHHHHHHHHHHhCCCCce
Confidence            467888888889999999999999999999999986411      12 46899999999999999999999999999999


Q ss_pred             eEccCCCCccchhccCHHHHHHhhCCCcccchHhhh
Q psy16546         75 IVEARREGDIVSMYANTDLAQRELGWSARCTVEKMC  110 (111)
Q Consensus        75 ~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l  110 (111)
                      ...+.+++++..+++|++|+++.|||+|+++++++|
T Consensus       332 ~~~~~~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i  367 (383)
T d1gy8a_         332 RECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAI  367 (383)
T ss_dssp             EEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHH
T ss_pred             EECCCCCCCcCEeeeCHHHHHHHHCCccCCCHHHHH
Confidence            998888888888899999999999999999999987

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.86  E-value=7.2e-22  Score=130.34  Aligned_cols=101  Identities=20%  Similarity=0.307  Sum_probs=89.3

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccc-eEccC
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPY-IVEAR   79 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~-~~~~~   79 (111)
                      |+.++|      +|++.|||+||+|+|+++..+++++   . .+++||+++++.+|+.++++.+.+.+|.+.+. ...+.
T Consensus       204 ~i~v~~------~g~~~r~~i~v~D~a~ai~~~~~~~---~-~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~  273 (322)
T d1r6da_         204 TLPLYG------DGANVREWVHTDDHCRGIALVLAGG---R-AGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVAD  273 (322)
T ss_dssp             CEEEET------TSCCEEEEEEHHHHHHHHHHHHHHC---C-TTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECC
T ss_pred             CcEEec------CCCeEEccEEHHHHHHHHHHHHhCC---C-CCCeeEEeecccchhHHHHHHHHHHhCCCccceeecCC
Confidence            577888      9999999999999999999999986   3 57899999999999999999999999988654 44556


Q ss_pred             CCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         80 REGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        80 ~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ++.+...+.+|++|+++.|||+|+++++++|+
T Consensus       274 ~~~~~~~~~~d~~k~~~~lg~~p~~~~eegI~  305 (322)
T d1r6da_         274 RKGHDLRYSLDGGKIERELGYRPQVSFADGLA  305 (322)
T ss_dssp             CTTCCCBCCBCCHHHHHHHCCCCCSCHHHHHH
T ss_pred             CCCCCceeeeCHHHHHHHHCCCCCCCHHHHHH
Confidence            67777778899999999999999999999973

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.7e-22  Score=130.60  Aligned_cols=100  Identities=23%  Similarity=0.324  Sum_probs=92.4

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR   80 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~   80 (111)
                      ++.++|      +|++.|||+|++|+|++++.++++.     .+++||+++++.+++.++++.+++.++.+.++.+.+.+
T Consensus       199 ~i~i~~------~g~~~r~~i~v~D~~~~~~~~~~~~-----~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  267 (312)
T d2b69a1         199 PLTVYG------SGSQTRAFQYVSDLVNGLVALMNSN-----VSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEA  267 (312)
T ss_dssp             CEEEES------SSCCEEECEEHHHHHHHHHHHHTSS-----CCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCC
T ss_pred             CeEEeC------CCCeeEccEEHHHHHHHHHHHHhhc-----cCCceEecCCcccchhhHHHHHHHHhCCCCceEECCCC
Confidence            467788      9999999999999999999998875     67899999999999999999999999999999988888


Q ss_pred             CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         81 EGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        81 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +.+...+.+|++|+++.|||+|.++++++|+
T Consensus       268 ~~~~~~~~~d~~k~~~~lgw~p~~~l~~~I~  298 (312)
T d2b69a1         268 QDDPQKRKPDIKKAKLMLGWEPVVPLEEGLN  298 (312)
T ss_dssp             TTCCCCCCBCCHHHHHHHCCCCCSCHHHHHH
T ss_pred             CCCCCeeeECHHHHHHHHCCCCCCCHHHHHH
Confidence            8888888899999999999999999999873

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.7e-21  Score=129.33  Aligned_cols=110  Identities=49%  Similarity=0.899  Sum_probs=98.2

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR   80 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~   80 (111)
                      |+.++|......+|++.|||+||.|++.++..+........ .+++||+++++++|+.|+++.+.+.+|.+.++...+.+
T Consensus       214 ~i~i~g~~~~~~~g~~~rd~i~v~D~~~~~~~~~~~~~~~~-~~~i~Ni~~~~~~si~e~~~~i~~~~g~~~~~~~~~~~  292 (338)
T d1udca_         214 SLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKP-GVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR  292 (338)
T ss_dssp             CEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHTTCC-EEEEEEESCSSCEEHHHHHHHHHHHHTSCCCEEEECCC
T ss_pred             CEEEeCCCcccCCCCceeeEEEEeehhhhcccccccccccc-CcceeeecCCCCCcHHHHHHHHHHHHCCCCceEECCCC
Confidence            46778876777789999999999999999998888664445 67899999999999999999999999999999999988


Q ss_pred             CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         81 EGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        81 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +.+...+.+|++|+++.|||+|.++++++|+
T Consensus       293 ~~~~~~~~~d~~k~~~~lgwkp~~~l~egi~  323 (338)
T d1udca_         293 EGDLPAYWADASKADRELNWRVTRTLDEMAQ  323 (338)
T ss_dssp             TTCCSBCCBCCHHHHHHHCCCCCCCHHHHHH
T ss_pred             CCCCCEeeECHHHHHHHHCCCcCCCHHHHHH
Confidence            8888888899999999999999999999974

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.83  E-value=1.1e-20  Score=126.66  Aligned_cols=101  Identities=23%  Similarity=0.290  Sum_probs=87.1

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCC--------Cc
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGK--------PV   72 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~--------~~   72 (111)
                      |+.++|      +|++.|+|+||+|+|+|+..++++.   . .+++|||++++.+|+.++++.+.+.++.        ..
T Consensus       220 ~~~v~g------~g~~~r~~i~v~D~a~ai~~~~~~~---~-~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~  289 (361)
T d1kewa_         220 PLPIYG------KGDQIRDWLYVEDHARALHMVVTEG---K-AGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYRE  289 (361)
T ss_dssp             CEEEET------TSCCEEEEEEHHHHHHHHHHHHHHC---C-TTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGG
T ss_pred             CcEEeC------CCCeEEeCEEHHHHHHHHHHHHhcC---C-CCCeEEECCCCCcchHHHHhHhhhhcccccccccCccc
Confidence            567888      9999999999999999999999985   3 5789999999999999999999987742        23


Q ss_pred             cceEccCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         73 PYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        73 ~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .+...+.++.+...+.+|++|+++.|||+|.++++++|+
T Consensus       290 ~~~~~~~~~~~~~~~~~d~~k~~~~lgw~P~~~l~e~i~  328 (361)
T d1kewa_         290 QITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIR  328 (361)
T ss_dssp             GEEEECCCTTCCCBCCBCCHHHHHHHCCCCSCCHHHHHH
T ss_pred             ceeecCCCCCCCceeeeCHHHHHHHHCCCCCCCHHHHHH
Confidence            445556677787888899999999999999999999873

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=6.1e-21  Score=126.50  Aligned_cols=104  Identities=13%  Similarity=0.097  Sum_probs=83.0

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC-cccHHHHHHHHHHHhCCCccceEccC
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ-GTSVLQLLRTFERVTGKPVPYIVEAR   79 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~-~~s~~e~~~~i~~~~~~~~~~~~~~~   79 (111)
                      ++.++|      +|++.|+|+|++|+|+++..+++++.... .+++||+++++ .+|+.++++.+.+.++........|.
T Consensus       209 ~~~~~~------~g~~~r~~i~v~D~~~a~~~~~~~~~~~~-~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~  281 (342)
T d2blla1         209 PIKLID------GGKQKRCFTDIRDGIEALYRIIENAGNRC-DGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPP  281 (342)
T ss_dssp             CEEEGG------GSCCEEECEEHHHHHHHHHHHHHCGGGTT-TTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCC
T ss_pred             CccccC------CCCeeeeecccccccceeeeehhhccccC-CCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCc
Confidence            456778      99999999999999999999999864445 67899998775 58999999999999987655544332


Q ss_pred             C---------------CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         80 R---------------EGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        80 ~---------------~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .               ..++....+|++|+++.|||+|+++++++|+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~P~~sleegl~  328 (342)
T d2blla1         282 FAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETID  328 (342)
T ss_dssp             CCCEEEC------------CCCCCBCCHHHHHHHCCCCCCCHHHHHH
T ss_pred             ccccceeccccccccccccccccccCHHHHHHHHCCCcCCCHHHHHH
Confidence            1               1233345679999999999999999999874

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=99.83  E-value=1e-20  Score=124.52  Aligned_cols=103  Identities=20%  Similarity=0.337  Sum_probs=91.2

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecC--CCcccHHHHHHHHHHHhCCCccceEcc
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGT--GQGTSVLQLLRTFERVTGKPVPYIVEA   78 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~--~~~~s~~e~~~~i~~~~~~~~~~~~~~   78 (111)
                      |++++|      +|++.|+|+|++|+|++++.++++.. .. .+++||+..  +..+++.|+++.+.+.++.+.++...+
T Consensus       225 ~~~~~g------~g~~~r~~~~v~D~~~~~~~~l~~~~-~~-~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~  296 (338)
T d1orra_         225 PFTISG------NGKQVRDVLHAEDMISLYFTALANVS-KI-RGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLP  296 (338)
T ss_dssp             CEEEES------SSCCEEECEEHHHHHHHHHHHHHTHH-HH-TTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEEC
T ss_pred             ceEEeC------CCceeEeeecccchhhHHHHHHhccc-cc-cCccccccccccccccHHHHHHHHHHHHCCCceeEeCC
Confidence            577888      99999999999999999999998752 23 578999854  567899999999999999998988888


Q ss_pred             CCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         79 RREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        79 ~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .++.+...+.+|++|+++.|||+|.++++++|+
T Consensus       297 ~~~~~~~~~~~d~~k~~~~Lg~~p~~sl~e~i~  329 (338)
T d1orra_         297 VRESDQRVFVADIKKITNAIDWSPKVSAKDGVQ  329 (338)
T ss_dssp             CCSSCCSEECBCCHHHHHHHCCCCCSCHHHHHH
T ss_pred             CCCCCcCeeeECHHHHHHHHCCCcCCCHHHHHH
Confidence            888888888899999999999999999999974

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.82  E-value=2e-20  Score=122.84  Aligned_cols=94  Identities=21%  Similarity=0.273  Sum_probs=82.0

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccce--Ec--cCCCCccchhc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI--VE--ARREGDIVSMY   88 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~--~~--~~~~~~~~~~~   88 (111)
                      +|++.|+|+||+|+|++++++++++     .++.||+++++..|+.++++.+.+.++...+..  ..  ..++.+...+.
T Consensus       211 ~g~~~r~~i~v~D~~~~~~~~~~~~-----~~~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~  285 (321)
T d1rpna_         211 NVDAKRDWGFAGDYVEAMWLMLQQD-----KADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLL  285 (321)
T ss_dssp             CTTCEEECEEHHHHHHHHHHHHHSS-----SCCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCC
T ss_pred             CCCeEEccEEeHHHHHHHHHHHhcC-----CcCCceecccccceehhhhHHHHHHhCCCccceeecCCCCCCCCccCCcc
Confidence            9999999999999999999999986     578899999999999999999999998764432  22  24566777788


Q ss_pred             cCHHHHHHhhCCCcccchHhhhC
Q psy16546         89 ANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        89 ~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +|++|+++.|||+|+++++++|+
T Consensus       286 ~d~~k~~k~lG~~P~~~l~e~i~  308 (321)
T d1rpna_         286 GNPAKAQRVLGWKPRTSLDELIR  308 (321)
T ss_dssp             BCTHHHHHHHCCCCCSCHHHHHH
T ss_pred             CCHHHHHHHHCCCcCCCHHHHHH
Confidence            89999999999999999999974

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.81  E-value=4.8e-20  Score=123.04  Aligned_cols=98  Identities=14%  Similarity=0.254  Sum_probs=86.2

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE   81 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~   81 (111)
                      ...+|      +|++.|+|+|++|+|+++..++++.     .+++||++++..+|+.++++++.+.++.+.++...+.+ 
T Consensus       221 ~~~~g------~g~~~rd~i~v~D~~~~~~~~~~~~-----~~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~~-  288 (363)
T d2c5aa1         221 FEMWG------DGLQTRSFTFIDECVEGVLRLTKSD-----FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP-  288 (363)
T ss_dssp             EEEES------CSCCEECCEEHHHHHHHHHHHHHSS-----CCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCC-
T ss_pred             ccccC------CCCeEEEEeehhHHHHHHHHHHhCC-----CCCeEEEecCCcccHHHHHHHHHHHhCCCCceEeCCCC-
Confidence            45677      9999999999999999999998875     67899999999999999999999999998888777654 


Q ss_pred             CccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         82 GDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        82 ~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .+.....+|++|+++.|||+|.++++++|+
T Consensus       289 ~~~~~~~~d~ska~~~LGw~p~~sleegi~  318 (363)
T d2c5aa1         289 EGVRGRNSDNNLIKEKLGWAPNMRLKEGLR  318 (363)
T ss_dssp             CCCSBCEECCHHHHHHHSCCCCCCHHHHHH
T ss_pred             CCccccccCHHHHHHHhCCCCCCCHHHHHH
Confidence            344556789999999999999999999974

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.80  E-value=7e-20  Score=121.44  Aligned_cols=103  Identities=21%  Similarity=0.286  Sum_probs=87.7

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCC-----ccce
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKP-----VPYI   75 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~-----~~~~   75 (111)
                      |+.++|      +|++.|+|+||+|+|.|+..++.... .. .+++||+++++..|+.++++.|.+.++.+     ....
T Consensus       223 ~i~~~g------~g~~~r~~i~v~D~~~a~~~~~~~~~-~~-~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~  294 (341)
T d1sb8a_         223 DVYING------DGETSRDFCYIENTVQANLLAATAGL-DA-RNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPV  294 (341)
T ss_dssp             CCEEES------SSCCEECCEEHHHHHHHHHHHHTCCG-GG-CSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCE
T ss_pred             ceEEcC------CCCEEEEEEEEeccchhhhhhhhccc-cc-cceeeeecccccchHHHHHHHHHHHhcccccccccccc
Confidence            567888      99999999999999999999998753 23 57899999999999999999999999744     3334


Q ss_pred             EccCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         76 VEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        76 ~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ..+.++++.....+|++|+++.|||+|+++++++|+
T Consensus       295 ~~~~~~~~~~~~~~d~~k~~~~LGw~p~~sl~~gi~  330 (341)
T d1sb8a_         295 YRDFREGDVRHSLADISKAAKLLGYAPKYDVSAGVA  330 (341)
T ss_dssp             EECCCTTCCSBCCBCCHHHHHHTCCCCCCCHHHHHH
T ss_pred             ccCCCCCCcCeeeeCHHHHHHHHCCCcCCCHHHHHH
Confidence            455667777778889999999999999999999874

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=4.4e-20  Score=123.41  Aligned_cols=94  Identities=19%  Similarity=0.279  Sum_probs=77.7

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEc---------------
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVE---------------   77 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~---------------   77 (111)
                      +|++.|||+||+|+|+++++++++.     .+++||+++++.+|++++++.+.+.+|...+....               
T Consensus       219 ~~~~~r~~~~v~D~~~a~~~~~~~~-----~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  293 (357)
T d1db3a_         219 NMDSLRDWGHAKDYVKMQWMMLQQE-----QPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHD  293 (357)
T ss_dssp             CTTCEECCEEHHHHHHHHHHTTSSS-----SCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSS
T ss_pred             CCCeeecceeechHHHHHHHHHhCC-----CCCeEEECCCCceehHHHHHHHHHHhCCccccccccccccchhhhhhccc
Confidence            9999999999999999999999875     67899999999999999999999999854322110               


Q ss_pred             ----------------cCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         78 ----------------ARREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        78 ----------------~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                                      ..++.+...+.+|++|+++.|||+|+++++++|+
T Consensus       294 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~d~skakk~LGw~P~~sl~egI~  343 (357)
T d1db3a_         294 APGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVS  343 (357)
T ss_dssp             CTTCCTTCEEEEECGGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHH
T ss_pred             ccccccCceeEeeccccCCCccccccccCHHHHHHHHCCCcCCCHHHHHH
Confidence                            0134455566789999999999999999999873

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.78  E-value=5.8e-19  Score=117.22  Aligned_cols=101  Identities=23%  Similarity=0.366  Sum_probs=87.8

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCC-ccceEccC
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKP-VPYIVEAR   79 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~-~~~~~~~~   79 (111)
                      ++.++|      +|++.|+|+|++|+|++++.+++++   . .++.||+++++..++.++++.+.+.++.+ ..+...+.
T Consensus       212 ~~~i~~------~g~~~r~~i~v~D~a~a~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  281 (346)
T d1oc2a_         212 KPKLYG------EGKNVRDWIHTNDHSTGVWAILTKG---R-MGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTD  281 (346)
T ss_dssp             CCEEET------TSCCEEECEEHHHHHHHHHHHHHHC---C-TTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECC
T ss_pred             ceeEeC------CCCccccccchhhHHHHHHHHHhhc---c-cCccccccccccccchHHHHHHHHHhCCCCcceEECCC
Confidence            356778      9999999999999999999999885   3 68899999999999999999999999875 34566667


Q ss_pred             CCCccchhccCHHHHHHhhCCCccc-chHhhhC
Q psy16546         80 REGDIVSMYANTDLAQRELGWSARC-TVEKMCK  111 (111)
Q Consensus        80 ~~~~~~~~~~d~~k~~~~lg~~p~~-~~~~~l~  111 (111)
                      ++.+...+.+|++|+++.|||+|++ +++++|+
T Consensus       282 ~~~~~~~~~~d~~k~~~~LGw~P~~t~l~e~i~  314 (346)
T d1oc2a_         282 RAGHDLRYAIDASKLRDELGWTPQFTDFSEGLE  314 (346)
T ss_dssp             CTTCCCBCCBCCHHHHHHHCCCCSCCCHHHHHH
T ss_pred             CCCCCceeeeCHHHHHHHHCCCCcCCCHHHHHH
Confidence            7777777888999999999999987 6999873

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=1.7e-18  Score=114.96  Aligned_cols=110  Identities=45%  Similarity=0.839  Sum_probs=82.5

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhc----cccccceEEecCCCcccHHHHHHHHHHHhCCCccceE
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQG----EHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIV   76 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~----~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~   76 (111)
                      |+.++|......++...|||+|+.|++.+++.+++....    .. .+++||+++++++|+.++++.+.+.+|.+.++..
T Consensus       219 ~i~i~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~  297 (347)
T d1z45a2         219 KLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEG-LCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKV  297 (347)
T ss_dssp             CCCCC------CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTCC-EEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC--
T ss_pred             CeEEeCCCccccCCceeeeeeeeeccccccccccccccccccccc-ccccceecCCCcccHHHHHHHHHHHHCCCCceEe
Confidence            355667555566778889999999999999999885421    12 5689999999999999999999999999988888


Q ss_pred             ccCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         77 EARREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        77 ~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .+.++.++..+.+|++|++++|||+|.++++++|+
T Consensus       298 ~~~~~~~~~~~~~d~sk~~~~lGw~p~~~lee~i~  332 (347)
T d1z45a2         298 TGRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCK  332 (347)
T ss_dssp             -------CCCCCBCCHHHHHHTCCCCCCCHHHHHH
T ss_pred             CCCCCCCCCEeeECHHHHHHHHCCCCCCCHHHHHH
Confidence            88888888888899999999999999999999974

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.73  E-value=5.3e-18  Score=111.78  Aligned_cols=94  Identities=20%  Similarity=0.212  Sum_probs=80.5

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccce----EccCCCCccchhc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI----VEARREGDIVSMY   88 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~   88 (111)
                      +|.+.|||+|++|+|+++..+++++     ..+.++++.+...+..++++.+.+.++...+..    ....++.+...+.
T Consensus       221 ~~~~~rd~~~v~D~a~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  295 (339)
T d1n7ha_         221 NLQASRDWGFAGDYVEAMWLMLQQE-----KPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQ  295 (339)
T ss_dssp             CTTCEEECEEHHHHHHHHHHHHTSS-----SCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCC
T ss_pred             CCCccccceeeehHHHHHHHHHhcC-----CCCccccccccccccchhhhhhhhhhhcccCceeeeccCCCCCCCCCeee
Confidence            9999999999999999999999986     456677788899999999999999999764322    2334667777788


Q ss_pred             cCHHHHHHhhCCCcccchHhhhC
Q psy16546         89 ANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        89 ~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +|++|+++.|||+|+++++++|+
T Consensus       296 ~d~~Kak~~LGw~P~~~le~gi~  318 (339)
T d1n7ha_         296 GDASKAKEVLGWKPQVGFEKLVK  318 (339)
T ss_dssp             BCCHHHHHHHCCCCCSCHHHHHH
T ss_pred             ECHHHHHHHHCCCcCCCHHHHHH
Confidence            89999999999999999999974

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.68  E-value=6e-17  Score=108.92  Aligned_cols=99  Identities=17%  Similarity=0.192  Sum_probs=77.0

Q ss_pred             CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEe--cCCCcccHHHHHHHHHHHhC---CCccce
Q psy16546          1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNL--GTGQGTSVLQLLRTFERVTG---KPVPYI   75 (111)
Q Consensus         1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni--~~~~~~s~~e~~~~i~~~~~---~~~~~~   75 (111)
                      |++|+|      +|.+.|||+||+|+|+|+..++++.  ..  .+.|++  ++++.+|+.++++.+.+..+   ...+..
T Consensus       252 ~~~i~g------~~~~~rd~v~v~D~~~a~~~~~~~~--~~--~g~~~~~~~~~~~~si~el~~~i~~~~~~~~~~~~~~  321 (393)
T d1i24a_         252 PLTVYG------KGGQTRGYLDIRDTVQCVEIAIANP--AK--AGEFRVFNQFTEQFSVNELASLVTKAGSKLGLDVKKM  321 (393)
T ss_dssp             CEEEET------TSCCEEEEEEHHHHHHHHHHHHHSC--CC--TTCEEEEEECSEEEEHHHHHHHHHHHHHTTTCCCCEE
T ss_pred             eeEEee------ecccccccccccchHHHHHHHHHhh--cc--cceeeeecCCCCeeEHHHHHHHHHHHHHhhCCCccee
Confidence            578889      9999999999999999999999986  23  333333  34578999999999988763   344444


Q ss_pred             E--ccCCCCccchhccCHHHHHHhhCCCcccchHhhh
Q psy16546         76 V--EARREGDIVSMYANTDLAQRELGWSARCTVEKMC  110 (111)
Q Consensus        76 ~--~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l  110 (111)
                      .  .|..+.+...+..|++|+++ |||+|.+++++++
T Consensus       322 ~~~~~~~~~~~~~~~~d~~k~~~-LGw~P~~~~~~~i  357 (393)
T d1i24a_         322 TVPNPRVEAEEHYYNAKHTKLME-LGLEPHYLSDSLL  357 (393)
T ss_dssp             EECCSSCSCSSCCCCBCCCHHHH-TTCCCCCCCHHHH
T ss_pred             eccCCCCCCCccEecCCHHHHHH-cCCccccCHHHHH
Confidence            3  34455666677889999986 9999999998876

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.68  E-value=1.2e-16  Score=102.62  Aligned_cols=92  Identities=13%  Similarity=-0.009  Sum_probs=77.1

Q ss_pred             CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCC-----ccchhc
Q psy16546         14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREG-----DIVSMY   88 (111)
Q Consensus        14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~   88 (111)
                      +++.|+|+|++|+|+++..++++.     ..++||+++++.+|+.|+++.+++.+|.+.++...+....     ++...+
T Consensus       177 ~~~~~~~i~v~D~~~~~~~~~~~~-----~~g~~~~~~~~~~s~~e~~~~i~~~~g~~~~i~~i~~~~~~~~a~rp~~~~  251 (281)
T d1vl0a_         177 HDQVGTPTSTVDLARVVLKVIDEK-----NYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSV  251 (281)
T ss_dssp             SSCEECCEEHHHHHHHHHHHHHHT-----CCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCC
T ss_pred             CCceeccchhhhhhhhhhhhhhhc-----ccCceeEeCCCccchHHHHHHHHHHhCCCceEEeccHHHcCCcCCCccccc
Confidence            368999999999999999999986     5689999999999999999999999999887766543211     123346


Q ss_pred             cCHHHHHHhhCCCcccchHhhhC
Q psy16546         89 ANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        89 ~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +|++|+++.|||+|. +++++|+
T Consensus       252 ld~~k~~~~~g~~~~-~~~~~l~  273 (281)
T d1vl0a_         252 LRNYMLELTTGDITR-EWKESLK  273 (281)
T ss_dssp             BCCHHHHHTTCCCCC-BHHHHHH
T ss_pred             cCHHHHHHHhCCCCC-CHHHHHH
Confidence            799999999999987 8988873

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.3e-16  Score=105.49  Aligned_cols=99  Identities=17%  Similarity=0.241  Sum_probs=81.6

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEc----
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVE----   77 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~----   77 (111)
                      +.++|      +|++.|+|+||+|+|+|+..++++.     ..+.|+++.+...++.+....+...++........    
T Consensus       215 ~~~~g------~g~~~r~~i~v~D~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (347)
T d1t2aa_         215 CFSLG------NLDAKRDWGHAKDYVEAMWLMLQND-----EPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENE  283 (347)
T ss_dssp             CEEES------CTTCEECCEEHHHHHHHHHHHHHSS-----SCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGC
T ss_pred             eeecC------CCcceeeeeEecHHHHHHHHHhhcC-----CCccceeccccccccchhhhhhhhhhcceeeecccchhh
Confidence            45677      9999999999999999999999986     46789999999999999999999998875322111    


Q ss_pred             -----------------cCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         78 -----------------ARREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        78 -----------------~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                                       ..++.+...+.+|++|++++|||+|+++++++|+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~skak~~Lgw~P~~sl~e~i~  334 (347)
T d1t2aa_         284 VGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVR  334 (347)
T ss_dssp             EEEETTTCCEEEEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCHHHHHH
T ss_pred             hhhhhhcCCceeeecccCCCCCCcCEeeECHHHHHHHHCCCcCCCHHHHHH
Confidence                             1234555667789999999999999999999873

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=8e-16  Score=100.49  Aligned_cols=102  Identities=22%  Similarity=0.423  Sum_probs=88.8

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhc------cccccceEEecCCCcccHHHHHHHHHHHhCCCccce
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQG------EHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI   75 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~------~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~   75 (111)
                      +.++|      +|++.|+|+|++|+++++..++++...      .. ..+.+|++.+...++.++++.+.+.++....+.
T Consensus       198 ~~~~g------~g~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~  270 (315)
T d1e6ua_         198 VVVWG------SGTPMREFLHVDDMAAASIHVMELAHEVWLENTQP-MLSHINVGTGVDCTIRELAQTIAKVVGYKGRVV  270 (315)
T ss_dssp             EEEES------CSCCEECEEEHHHHHHHHHHHHHSCHHHHHHTSBT-TBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEE
T ss_pred             eEEcC------CCceEEEEEEeehhHHHHHHhhhhccccccccccc-cccccccCCCcchHHHHHHHHHHHHhCCCcceE
Confidence            56778      999999999999999999999975411      12 567899999999999999999999999998888


Q ss_pred             EccCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         76 VEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        76 ~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +.+.++.+...+.+|++|+++ |||+|+++++++|+
T Consensus       271 ~~~~~~~~~~~~~~d~sk~k~-Lg~~p~~~l~e~i~  305 (315)
T d1e6ua_         271 FDASKPDGTPRKLLDVTRLHQ-LGWYHEISLEAGLA  305 (315)
T ss_dssp             EETTSCCCCSBCCBCCHHHHH-TTCCCCCCHHHHHH
T ss_pred             ECCCCCCCCceeccCHHHHHH-cCCCCCCCHHHHHH
Confidence            888888887778889999975 99999999999873

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=3.7e-16  Score=101.07  Aligned_cols=93  Identities=17%  Similarity=-0.016  Sum_probs=64.7

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccC----CCCccchhc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEAR----REGDIVSMY   88 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~   88 (111)
                      ++++.|+|+|+.|+|+++..++++.     ..+.||+++++..|++++++++.+..+. ..+...|.    +........
T Consensus       204 ~~~~~r~~~~v~d~~~~~~~~~~~~-----~~~~~~~~~~~~~si~~i~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~  277 (307)
T d1eq2a_         204 SENFKRDFVYVGDVADVNLWFLENG-----VSGIFNLGTGRAESFQAVADATLAYHKK-GQIEYIPFPDKLKGRYQAFTQ  277 (307)
T ss_dssp             ----CBCEEEHHHHHHHHHHHHHHC-----CCEEEEESCSCCBCHHHHHHHC----------------------CCCSCC
T ss_pred             ccceeeeeeecccHHHHHHHHhhhc-----cccccccccccchhHHHHHHHHHHhcCC-CCeeEeeCCccCCCCCceeee
Confidence            8889999999999999999999986     6789999999999999999999887653 23333222    122233355


Q ss_pred             cCHHHHHHhhCCCcccchHhhhC
Q psy16546         89 ANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        89 ~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .|++|+++.+||+|.++++++|+
T Consensus       278 ~d~~k~~~~~~~~p~~sl~egi~  300 (307)
T d1eq2a_         278 ADLTNLRAAGYDKPFKTVAEGVT  300 (307)
T ss_dssp             BCCHHHHHTTCCCCCCCHHHHHH
T ss_pred             cCHHHHHHHHCCCCCCCHHHHHH
Confidence            69999999999999999999984

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=99.53  E-value=1.1e-14  Score=96.19  Aligned_cols=99  Identities=15%  Similarity=0.264  Sum_probs=75.1

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhcc--c-cccceEEecCCCcccHHHHHHHHHHHhCCCccceEc-cCCCCccchhc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGE--H-LKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVE-ARREGDIVSMY   88 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~--~-~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~   88 (111)
                      ++++.|+|+|+.|+|.|+..++.+....  . ..+..++.+.+..+++.++++.+.+.++........ ..++.+...+.
T Consensus       224 ~~~~~~~~~~v~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  303 (356)
T d1rkxa_         224 NPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLK  303 (356)
T ss_dssp             CTTCEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCC
T ss_pred             eccccccccccccccchhhhhhhhhcccccccccccccccccccccccchhhhhhHHHhCCCccEEEcCCCCCCCcCeee
Confidence            8999999999999999999999875211  1 022233344567899999999999999987766543 33466677778


Q ss_pred             cCHHHHHHhhCCCcccchHhhhC
Q psy16546         89 ANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        89 ~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      +|++|++++|||+|+++++++|+
T Consensus       304 ~d~skak~~LGw~P~~~l~egi~  326 (356)
T d1rkxa_         304 LDCSKAKMQLGWHPRWNLNTTLE  326 (356)
T ss_dssp             BCCHHHHHHHCCCCCCCHHHHHH
T ss_pred             EcHHHHHHHHCCCcCCCHHHHHH
Confidence            89999999999999999999873

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=99.42  E-value=2.3e-13  Score=89.84  Aligned_cols=95  Identities=16%  Similarity=0.093  Sum_probs=65.8

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCccchh-ccCH
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSM-YANT   91 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~d~   91 (111)
                      .+.+.|+|+||+|+|++++.+++++  .  .++.||+++++.+|++|++++|++.++........+......... ...+
T Consensus       239 ~~~~~~~~v~v~Dva~~~i~~l~~~--~--~~g~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~~~~~~~~~~~~~~~~s  314 (342)
T d1y1pa1         239 ALMPPQYYVSAVDIGLLHLGCLVLP--Q--IERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDTAPS  314 (342)
T ss_dssp             HTCCSEEEEEHHHHHHHHHHHHHCT--T--CCSCEEEECCEEECHHHHHHHHHHHCTTSCCCCCCCCCCCCCCEECCHHH
T ss_pred             CCccceeeeeHHHHHHHHHHhhcCc--c--ccceEEEEcCCceEHHHHHHHHHHHcCCCcCCccCCccCcccccccchHH
Confidence            4567799999999999999999986  3  456677888999999999999999885321111222211111111 1123


Q ss_pred             HHHHHhhCCCcccchHhhhC
Q psy16546         92 DLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        92 ~k~~~~lg~~p~~~~~~~l~  111 (111)
                      .+..+.+||.|.++++++|+
T Consensus       315 ~~~~k~lg~~~~~~lee~i~  334 (342)
T d1y1pa1         315 LEILKSLGRPGWRSIEESIK  334 (342)
T ss_dssp             HHHHHHTTCCSCCCHHHHHH
T ss_pred             HHHHHHcCCCCCcCHHHHHH
Confidence            44445599999999999873

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=99.25  E-value=6.5e-12  Score=80.50  Aligned_cols=97  Identities=14%  Similarity=-0.035  Sum_probs=69.9

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhc-cccccceEEecCCCcccHHHHHHHHHHHhCC---Cccc---eEccCC-----
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQG-EHLKIKFYNLGTGQGTSVLQLLRTFERVTGK---PVPY---IVEARR-----   80 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~-~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~---~~~~---~~~~~~-----   80 (111)
                      .+.+.++++|+.|+++++..+++.... .. .+++||+++++.++..++++.+.+..+.   ....   ...+..     
T Consensus       179 ~~~~~~~~~~~~d~~~~~~~~i~~~~~~~~-~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~  257 (298)
T d1n2sa_         179 INDQYGAPTGAELLADCTAHAIRVALNKPE-VAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTP  257 (298)
T ss_dssp             ECSCEECCEEHHHHHHHHHHHHHHHHHCGG-GCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCS
T ss_pred             ccceeecccccchHHHHHHHHHhhhhcccc-ccccccccCCCceecHHHHHHHHhhhhccCccccccceeeeehhhcCcc
Confidence            446789999999999999988874311 23 6799999999999999999998876632   2221   111111     


Q ss_pred             CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546         81 EGDIVSMYANTDLAQRELGWSARCTVEKMCK  111 (111)
Q Consensus        81 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~  111 (111)
                      ...+....+|++|+++.|||+|. +++++|+
T Consensus       258 a~RP~~~~ld~~K~~~~~~~~~~-~~~~gl~  287 (298)
T d1n2sa_         258 ASRPGNSRLNTEKFQRNFDLILP-QWELGVK  287 (298)
T ss_dssp             SCCCSBCCBCCHHHHHHHTCCCC-BHHHHHH
T ss_pred             CCCccccccCHHHHHHHHCCCCC-cHHHHHH
Confidence            11122346799999999999997 8998874

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=99.04  E-value=1e-10  Score=75.19  Aligned_cols=63  Identities=14%  Similarity=0.156  Sum_probs=53.7

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccc-eEEecCCCcccHHHHHHHHHHHhCCCccceEcc
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIK-FYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEA   78 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~-~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~   78 (111)
                      +|++.++|+|++|+|++++.++.++  .. .++ .|++++++.+|+.|+++.+.+.+|.+.+....|
T Consensus       186 ~g~~~~~~i~v~Dva~a~~~~l~~~--~~-~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~i~  249 (312)
T d1qyda_         186 DGNVKGIWVDEDDVGTYTIKSIDDP--QT-LNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS  249 (312)
T ss_dssp             TSCSEEEEECHHHHHHHHHHHTTCG--GG-SSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred             ccccccceeeHHHHHHHHHHHhcCc--cc-cCceEEEeCCCcCCCHHHHHHHHHHHHCCCCeEEECC
Confidence            9999999999999999999999886  33 445 567777788999999999999999887666554

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=99.03  E-value=8.7e-11  Score=74.99  Aligned_cols=68  Identities=15%  Similarity=0.209  Sum_probs=57.1

Q ss_pred             eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhcccccc-ceEEecCCCcccHHHHHHHHHHHhCCCccceEcc
Q psy16546          2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKI-KFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEA   78 (111)
Q Consensus         2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~-~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~   78 (111)
                      +.++|      +|++.|+|+|++|+|++++.+++++  .. .+ ..|++++++.+|+.|+++.+.+.+|.+.+....|
T Consensus       176 ~~~~~------~~~~~~~~i~v~Dva~~~~~~l~~~--~~-~~~~~~~~~~~~~~s~~ei~~~~~~~~G~~~~~~~~~  244 (307)
T d1qyca_         176 VVILG------DGNARVVFVKEEDIGTFTIKAVDDP--RT-LNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP  244 (307)
T ss_dssp             EEEET------TSCCEEEEECHHHHHHHHHTTSSCG--GG-TTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred             ceeee------cccccccCCcHHHHHHHHHHHhcCh--hh-cCceeEEeCCCCccCHHHHHHHHHHHHCCCCcEEECC
Confidence            35667      8999999999999999999999876  33 34 4577788899999999999999999887776654

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=98.40  E-value=3.6e-07  Score=59.68  Aligned_cols=65  Identities=14%  Similarity=0.139  Sum_probs=53.8

Q ss_pred             CCCccceeeeH-HHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccC
Q psy16546         13 DGTGIRDYIHV-MDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEAR   79 (111)
Q Consensus        13 ~g~~~r~~v~v-~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~   79 (111)
                      +|+..+.++++ +|+++++..++...+... .+++|++++ +.+|+.|+++++.+.+|+++++...|.
T Consensus       180 ~~~~~~~~i~~~~Dva~~v~~~l~~~~~~~-~G~~~~~~g-~~~T~~eia~~l~~~~G~~v~~~~vp~  245 (350)
T d1xgka_         180 DPDIPLPWLDAEHDVGPALLQIFKDGPQKW-NGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPK  245 (350)
T ss_dssp             CTTSCEEEECHHHHHHHHHHHHHHHCHHHH-TTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSS
T ss_pred             cCCCcceEEEeHHHHHHHHHHHHhCChhhc-CCeEEEEeC-CcCCHHHHHHHHHHHHCCcceEEECCH
Confidence            67788889986 799999999997653344 578999885 679999999999999999988777764

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.10  E-value=4.1e-07  Score=55.66  Aligned_cols=50  Identities=24%  Similarity=0.201  Sum_probs=38.9

Q ss_pred             CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC---cccHHHHHHHHHHH
Q psy16546         15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ---GTSVLQLLRTFERV   67 (111)
Q Consensus        15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~---~~s~~e~~~~i~~~   67 (111)
                      ...++|+|++|+|++++.+++++  .. .+++|||+++.   ..+++++.+++.+.
T Consensus       196 ~~~~~~i~~~Dva~a~~~~l~~~--~~-~g~~~~i~~~~~~~~~~~~~~~~lf~~i  248 (252)
T d2q46a1         196 QTDTKTVPRADVAEVCIQALLFE--EA-KNKAFDLGSKPEGTSTPTKDFKALFSQV  248 (252)
T ss_dssp             GSSCCEEEHHHHHHHHHHHTTCG--GG-TTEEEEEEECCTTTSCCCCCHHHHHTTC
T ss_pred             cCCCCeEEHHHHHHHHHHHhCCc--cc-cCcEEEEeeCCCCCChhHHHHHHHHHHH
Confidence            44568999999999999999987  55 67899998643   45677777766554

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.015  Score=34.40  Aligned_cols=35  Identities=23%  Similarity=0.072  Sum_probs=29.3

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEec
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLG   50 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~   50 (111)
                      +|.....|++++|+|++++.+++++  .. .++.+.++
T Consensus       168 ~~~~~~~~i~~~DvA~~~~~~l~~~--~~-~g~~~~~s  202 (205)
T d1hdoa_         168 DGRGPSRVISKHDLGHFMLRCLTTD--EY-DGHSTYPS  202 (205)
T ss_dssp             SSCSSCSEEEHHHHHHHHHHTTSCS--TT-TTCEEEEE
T ss_pred             CCCCCCCcCCHHHHHHHHHHHhCCC--CC-CCEEEecC
Confidence            7788889999999999999999886  44 57777665

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.46  E-value=0.01  Score=35.23  Aligned_cols=28  Identities=14%  Similarity=-0.145  Sum_probs=21.2

Q ss_pred             ceeeeHHHHHHHHHHHHhhhhccccccceEEec
Q psy16546         18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLG   50 (111)
Q Consensus        18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~   50 (111)
                      +..||++|+|++++.+++++     ..+.+++.
T Consensus       174 ~~~i~v~DvA~ai~~~~~~~-----~~g~~~~~  201 (212)
T d2a35a1         174 YHGIEACDLARALWRLALEE-----GKGVRFVE  201 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHTCC-----CSEEEEEE
T ss_pred             CcEEEHHHHHHHHHHHHcCC-----CCCCEEEE
Confidence            34599999999999999886     34555444

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.09  E-value=0.023  Score=34.33  Aligned_cols=35  Identities=9%  Similarity=0.052  Sum_probs=25.5

Q ss_pred             CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecC
Q psy16546         13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGT   51 (111)
Q Consensus        13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~   51 (111)
                      .+......||++|+|+|++.++.++   . .++.+.+.+
T Consensus       189 ~~~~~~~~I~~~dvA~a~i~~~~~~---~-~~~~~i~~~  223 (232)
T d2bkaa1         189 DSWASGHSVPVVTVVRAMLNNVVRP---R-DKQMELLEN  223 (232)
T ss_dssp             TTGGGGTEEEHHHHHHHHHHHHTSC---C-CSSEEEEEH
T ss_pred             CcccCCCeEEHHHHHHHHHHHHhcC---c-cCCeEEEcH
Confidence            4444556799999999999998875   2 456666653