Psyllid ID: psy16565

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------
MGNKTSCCSYSTPTTQRKVHSKSSRFEEYVPEGEESVGNLQHISEREPEDWETDPSLHPKAGTIFLERSKLEQLVRVYQYNKNFSHIAADNRPLKKSSSCSTIYLDDSTVSQPNLKNTVKCSALAIYYYIKNGNSYKYLEIFDEKLHPLTRDPVPEDYDRYPPEHRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVEDMNELERQFLEMLQFNINVPSSVYAKYYFDLRSLAESNDLTFPAEPLSKERAQKLEAMSIVYAKYYFDLRSLAESNDLTFPAEPLSKERAQKLEAMSRIMEDKMLRNNIKKWSSLDNVNFANQGSRKSIAILS
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccEEEccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccccccEEcccccHHHHHHHHHHHHHHccccEEEcHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
cccccEEEcccccccccccccccHHHHHccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHcccccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccHcccHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccccHHHHHHHHHHHHHHHHHHccccccccccEEccccccccEEEEEc
mgnktsccsystpttqrkvhskssrfeeyvpegeesvgnlqhiserepedwetdpslhpkagtifLERSKLEQLVRVYQYNKnfshiaadnrplkkssscstiylddstvsqpnlkntvkCSALAIYYYIkngnsykyLEIFdeklhpltrdpvpedydryppeHRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYaevditpgnwkRIVLGAILLASKvwddqavwnVDYCQILKDISVEDMNELERQFLEMLQFNINVPSSVYAKYYFDlrslaesndltfpaeplsKERAQKLEAMSIVYAKYYFDLrslaesndltfpaeplsKERAQKLEAMSRIMEDKMLRNNIkkwssldnvnfanqgsrksiails
mgnktsccsystpttqrkvhskssRFEEYVPEGEESVGNLQHISEREPEDWETDPSLHPKAGTIFLERSKLEQLVRVYQYNKNfshiaadnrplkksSSCSTIYlddstvsqpnlkNTVKCSALAIYYYIKNGNSYKYLEIFDEKLHPLTRDPVPEDYDRYPPEHRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVEDMNELERQFLEMLQFNINVPSSVYAKYYFDLRSLAESNDLTFPAEPLSKERAQKLEAMSIVYAKYYFDLRSLAESNdltfpaeplskeRAQKLEAMSRIMEDKMLRNNIkkwssldnvnfanqgsrksiails
MGNKTSCCSYSTPTTQRKVHSKSSRFEEYVPEGEESVGNLQHISEREPEDWETDPSLHPKAGTIFLERSKLEQLVRVYQYNKNFSHIAADNRPLKKSSSCSTIYLDDSTVSQPNLKNTVKCSALAIYYYIKNGNSYKYLEIFDEKLHPLTRDPVPEDYDRYPPEHRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVEDMNELERQFLEMLQFNINVPSSVYAKYYFDLRSLAESNDLTFPAEPLSKERAQKLEAMSIVYAKYYFDLRSLAESNDLTFPAEPLSKERAQKLEAMSRIMEDKMLRNNIKKWSSLDNVNFANQGSRKSIAILS
*************************************************************GTIFLERSKLEQLVRVYQYNKNFSHIAAD*********CSTIYLDDSTVSQPNLKNTVKCSALAIYYYIKNGNSYKYLEIFDEKLHPLTRDPVPEDYDRYPPEHRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVEDMNELERQFLEMLQFNINVPSSVYAKYYFDLRSLAESN*L**************LEAMSIVYAKYYFDLRSLA************************************************************
MGNKTSC*****************************************************************************************************TVSQPNLKNTVKCSALAIYYYIKNGNSYKYL**F**KLHPLTRDPVPEDYDRYPPEHRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVEDMNELERQFLEMLQFNINVPSSVYAKYYFDLRSLAESNDLT*************************************************************************************K**AIL*
**************************************NLQHIS***********SLHPKAGTIFLERSKLEQLVRVYQYNKNFSHIAADNRPLKKSSSCSTIYLDDSTVSQPNLKNTVKCSALAIYYYIKNGNSYKYLEIFDEKLHPLTRDPVPEDYDRYPPEHRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVEDMNELERQFLEMLQFNINVPSSVYAKYYFDLRSLAESNDLTFPAEPLSKERAQKLEAMSIVYAKYYFDLRSLAESNDLTFPAEPLSKERAQKLEAMSRIMEDKMLRNNIKKWSSLDNVNFANQGSRKSIAILS
****************************************************TDPSLHPKAGTIFLERSKLEQLVRVYQYNKNFSHIAADNRPLKKSSSCSTIYLDDSTVSQPNLKNTVKCSALAIYYYIKNGNSYKYLEIFDEKLHPLTRDPVPEDYDRYPPEHRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVEDMNELERQFLEMLQFNINVPSSVYAKYYFDLRSLAESNDLTFPAEPLSKERAQKLEAMSIVYAKYYFDLRSLAESNDLTFPAEPLSKERAQKLEAMSRIMEDKMLRNNIKKWSSLDNVNFANQGSRKSIAILS
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MGNKTSCCSYSTPTTQRKVHSKSSRFEEYVPEGEESVGNLQHISEREPEDWETDPSLHPKAGTIFLERSKLEQLVRVYQYNKNFSHIAADNRPLKKSSSCSTIYLDDSTVSQPNLKNTVKCSALAIYYYIKNGNSYKYLEIFDEKLHPLTRDPVPEDYDRYPPEHRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVEDMNELERQFLEMLQFNINVPSSVYAKYYFDLRSLAESNDLTFPAEPLSKERAQKLEAMSIVYAKYYFDLRSLAESNDLTFPAEPLSKERAQKLEAMSRIMEDKMLRNNIKKWSSLDNVNFANQGSRKSIAILS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query377 2.2.26 [Sep-21-2011]
Q8ND76341 Cyclin-Y OS=Homo sapiens yes N/A 0.846 0.935 0.637 1e-114
Q8BGU5341 Cyclin-Y OS=Mus musculus yes N/A 0.816 0.903 0.656 1e-113
Q08CI4339 Cyclin-Y-like protein 1 O no N/A 0.827 0.920 0.628 1e-110
Q6NRF4343 Cyclin-Y-like protein 1-B N/A N/A 0.832 0.915 0.618 1e-109
Q28EL0343 Cyclin-Y-like protein 1 O no N/A 0.832 0.915 0.627 1e-109
Q8N7R7359 Cyclin-Y-like protein 1 O no N/A 0.790 0.830 0.598 1e-106
Q5U5D0339 Cyclin-Y-like protein 1-A N/A N/A 0.830 0.923 0.605 1e-103
P34624357 Uncharacterized cyclin-li yes N/A 0.811 0.857 0.550 3e-97
Q4R871360 Cyclin-Y-like protein 2 O N/A N/A 0.692 0.725 0.568 8e-81
Q5T2Q4361 Cyclin-Y-like protein 2 O no N/A 0.673 0.703 0.527 5e-73
>sp|Q8ND76|CCNY_HUMAN Cyclin-Y OS=Homo sapiens GN=CCNY PE=1 SV=2 Back     alignment and function desciption
 Score =  411 bits (1056), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/339 (63%), Positives = 258/339 (76%), Gaps = 20/339 (5%)

Query: 1   MGNKTSCCSYSTPTTQRKVHSKSSRFEEYVPEG----EESVGNLQHISEREPED---WET 53
           MGN TSCC  S+P  +R  HS   R E Y P+     E++  NLQHIS+RE  D    E 
Sbjct: 1   MGNTTSCCVSSSPKLRRNAHS---RLESYRPDTDLSREDTGCNLQHISDRENIDDLNMEF 57

Query: 54  DPSLHPKAGTIFLERSKLEQLVRVYQYNKNFSHIAADNRPLKKSSSCSTIYLDDSTVSQP 113
           +PS HP+A TIFL +S+ +  VR  + +   +H     +  +K SSCSTI+LDDSTVSQP
Sbjct: 58  NPSDHPRASTIFLSKSQTD--VREKRKSLFINH-HPPGQIARKYSSCSTIFLDDSTVSQP 114

Query: 114 NLKNTVKCSALAIYYYIKN--GNSYKYLEIFDEKLHPLTRDPVPEDYDRYPPEHRQIYKF 171
           NLK T+KC ALAIYY+IKN   +    L+IFDE LHPL++  VP DYD++ PE +QIY+F
Sbjct: 115 NLKYTIKCVALAIYYHIKNRDPDGRMLLDIFDENLHPLSKSEVPPDYDKHNPEQKQIYRF 174

Query: 172 IRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWN 231
           +RTLF+AAQLTAECAI+TLVYLERLLTYAE+DI P NWKRIVLGAILLASKVWDDQAVWN
Sbjct: 175 VRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPANWKRIVLGAILLASKVWDDQAVWN 234

Query: 232 VDYCQILKDISVEDMNELERQFLEMLQFNINVPSSVYAKYYFDLRSLAESNDLTFPAEPL 291
           VDYCQILKDI+VEDMNELERQFLE+LQFNINVPSSVYAKYYFDLRSLAE+N+L+FP EPL
Sbjct: 235 VDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSLAEANNLSFPLEPL 294

Query: 292 SKERAQKLEAMSIVYAKYYFDLRSLAE-----SNDLTFP 325
           S+ERA KLEA+S +    Y DLR  A      +++LT P
Sbjct: 295 SRERAHKLEAISRLCEDKYKDLRRSARKRSASADNLTLP 333
Positive regulatory subunit of the cyclin-dependent kinase CDK14/PFTK1. Acts as a cell-cycle regulator of Wnt signaling pathway during G2/M phase by recruiting CDK14/PFTK1 to the plasma membrane and promoting phosphorylation of LRP6, leading to the activation of the Wnt signaling pathway. Isoform 3 might play a role in the activation of MYC-mediated transcription.
Homo sapiens (taxid: 9606)
>sp|Q8BGU5|CCNY_MOUSE Cyclin-Y OS=Mus musculus GN=Ccny PE=1 SV=1 Back     alignment and function description
>sp|Q08CI4|CCYL1_DANRE Cyclin-Y-like protein 1 OS=Danio rerio GN=ccnyl1 PE=2 SV=1 Back     alignment and function description
>sp|Q6NRF4|CCY1B_XENLA Cyclin-Y-like protein 1-B OS=Xenopus laevis GN=ccnyl1-b PE=2 SV=1 Back     alignment and function description
>sp|Q28EL0|CCYL1_XENTR Cyclin-Y-like protein 1 OS=Xenopus tropicalis GN=ccnyl1 PE=2 SV=1 Back     alignment and function description
>sp|Q8N7R7|CCYL1_HUMAN Cyclin-Y-like protein 1 OS=Homo sapiens GN=CCNYL1 PE=1 SV=2 Back     alignment and function description
>sp|Q5U5D0|CCY1A_XENLA Cyclin-Y-like protein 1-A OS=Xenopus laevis GN=ccnyl1-a PE=2 SV=1 Back     alignment and function description
>sp|P34624|YOJ1_CAEEL Uncharacterized cyclin-like protein ZK353.1 OS=Caenorhabditis elegans GN=ZK353.1 PE=1 SV=3 Back     alignment and function description
>sp|Q4R871|CCYL2_MACFA Cyclin-Y-like protein 2 OS=Macaca fascicularis GN=CCNYL2 PE=2 SV=1 Back     alignment and function description
>sp|Q5T2Q4|CCYL2_HUMAN Cyclin-Y-like protein 2 OS=Homo sapiens GN=CCNYL2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query377
307189234342 Cyclin-Y [Camponotus floridanus] 0.888 0.979 0.692 1e-144
307199031342 Cyclin-Y [Harpegnathos saltator] 0.899 0.991 0.684 1e-143
322784927342 hypothetical protein SINV_03322 [Solenop 0.888 0.979 0.687 1e-143
332017092342 Cyclin-Y [Acromyrmex echinatior] 0.888 0.979 0.690 1e-143
156543076342 PREDICTED: cyclin-Y-like isoform 1 [Naso 0.899 0.991 0.689 1e-142
328707128348 PREDICTED: cyclin-Y-like [Acyrthosiphon 0.880 0.954 0.692 1e-142
340726913342 PREDICTED: cyclin-Y-like [Bombus terrest 0.888 0.979 0.679 1e-142
328789216342 PREDICTED: cyclin-Y-like [Apis mellifera 0.888 0.979 0.679 1e-142
380018917372 PREDICTED: cyclin-Y-like [Apis florea] 0.885 0.897 0.676 1e-141
383861954342 PREDICTED: cyclin-Y-like [Megachile rotu 0.888 0.979 0.671 1e-140
>gi|307189234|gb|EFN73682.1| Cyclin-Y [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 266/384 (69%), Positives = 291/384 (75%), Gaps = 49/384 (12%)

Query: 1   MGNKTSCCSYSTPTTQRK---VHSKSSRFEEYVPEGEESVGNLQHISEREPEDWETDPSL 57
           MGNK SCC YS+P   RK     S +   EE++PEG  SV NLQHISEREPEDW++DPSL
Sbjct: 1   MGNKNSCCVYSSPQVGRKEIGPESATRNLEEHLPEGGISVNNLQHISEREPEDWDSDPSL 60

Query: 58  HPKAGTIFLERSKLEQLVRVYQYNKNFSHIAADNRPLKKSSSCSTIYLDDSTVSQPNLKN 117
           HP AGTIF+ERSK  Q +      K   H  AD RPLKKSSSCSTIYLDDSTVSQPNLKN
Sbjct: 61  HPCAGTIFMERSK--QAIENGMVRKKSQHQIADTRPLKKSSSCSTIYLDDSTVSQPNLKN 118

Query: 118 TVKCSALAIYYYIKNGNSYKYLEIFDEKLHPLTRDPVPEDYDRYPPEHRQIYKFIRTLFN 177
           TVKC ALA+YY+IKN  S + ++IFDEKLHPLTRD V EDYD++ PEH+QIYKFIRTLFN
Sbjct: 119 TVKCVALAVYYHIKNRTSQRQIDIFDEKLHPLTRDGVAEDYDKHNPEHKQIYKFIRTLFN 178

Query: 178 AAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQI 237
           AAQLTAECAIITLVYLERLLTYAE+DITP NWKRIVLGAILLASKVWDDQAVWNVDYCQI
Sbjct: 179 AAQLTAECAIITLVYLERLLTYAEIDITPANWKRIVLGAILLASKVWDDQAVWNVDYCQI 238

Query: 238 LKDISVEDMNELERQFLEMLQFNINVPSSVYAKYYFDLRSLAESNDLTFPAEPLSKERAQ 297
           LKDI+VEDMNELERQFLEMLQFNINVPSSVYAKYYFDLR+LAE+N+LTFP+EPLSKE+AQ
Sbjct: 239 LKDITVEDMNELERQFLEMLQFNINVPSSVYAKYYFDLRTLAEANELTFPSEPLSKEKAQ 298

Query: 298 KLEAMSIVYAKYYFDLRSLAESNDLTFPAEPLSKERAQKLEAMSRIMEDKM----LRNNI 353
           KLEAMS VY                                      EDK+    LR  I
Sbjct: 299 KLEAMSRVY--------------------------------------EDKVTAEALRTGI 320

Query: 354 KKWSSLDNVNFANQGSRKSIAILS 377
           KKWSSLDNV     G R+SIAILS
Sbjct: 321 KKWSSLDNVCIG--GPRRSIAILS 342

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307199031|gb|EFN79755.1| Cyclin-Y [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|322784927|gb|EFZ11698.1| hypothetical protein SINV_03322 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|332017092|gb|EGI57891.1| Cyclin-Y [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|156543076|ref|XP_001605084.1| PREDICTED: cyclin-Y-like isoform 1 [Nasonia vitripennis] gi|345493724|ref|XP_003427140.1| PREDICTED: cyclin-Y-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|328707128|ref|XP_001948564.2| PREDICTED: cyclin-Y-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|340726913|ref|XP_003401796.1| PREDICTED: cyclin-Y-like [Bombus terrestris] gi|350421439|ref|XP_003492844.1| PREDICTED: cyclin-Y-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|328789216|ref|XP_623094.2| PREDICTED: cyclin-Y-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380018917|ref|XP_003693365.1| PREDICTED: cyclin-Y-like [Apis florea] Back     alignment and taxonomy information
>gi|383861954|ref|XP_003706449.1| PREDICTED: cyclin-Y-like [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query377
ZFIN|ZDB-GENE-091117-45349 ccny "cyclin Y" [Danio rerio ( 0.870 0.939 0.636 7.2e-107
FB|FBgn0032378406 CycY "Cyclin Y" [Drosophila me 0.562 0.522 0.853 1.3e-105
UNIPROTKB|Q8ND76341 CCNY "Cyclin-Y" [Homo sapiens 0.846 0.935 0.640 1.6e-104
MGI|MGI:1915224341 Ccny "cyclin Y" [Mus musculus 0.816 0.903 0.659 2.5e-104
ZFIN|ZDB-GENE-060929-732339 zgc:153047 "zgc:153047" [Danio 0.827 0.920 0.631 8.8e-102
UNIPROTKB|I3L5S3363 I3L5S3 "Uncharacterized protei 0.721 0.749 0.679 6e-99
UNIPROTKB|E1BBI6363 CCNYL1 "Uncharacterized protei 0.732 0.760 0.673 9.7e-99
UNIPROTKB|Q8N7R7359 CCNYL1 "Cyclin-Y-like protein 0.710 0.746 0.689 1.2e-98
UNIPROTKB|E2QVS1363 CCNYL1 "Uncharacterized protei 0.718 0.746 0.678 2.9e-96
UNIPROTKB|F1P0V0287 CCNYL1 "Uncharacterized protei 0.697 0.916 0.680 5.3e-95
ZFIN|ZDB-GENE-091117-45 ccny "cyclin Y" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
 Identities = 221/347 (63%), Positives = 264/347 (76%)

Query:     1 MGNKTSCCSYSTPTTQRKVHSKSSRFEEYVPEGE---ESVG-NLQHISEREPED---WET 53
             MGN TSCC  S+P  +R  HS   R E Y PE E   E  G NLQHIS+RE  D    E 
Sbjct:     1 MGNSTSCCVSSSPKLRRNAHS---RLEPYRPEPELSREDTGCNLQHISDRENIDELNMEY 57

Query:    54 DPSLHPKAGTIFLERSKLEQLV---RVYQYNKNF--SHIAADNRPLKKSSSCSTIYLDDS 108
             +PS HP+A TIFL +S+ + L+   +V +  K+   +H        +K SSCSTI+LDDS
Sbjct:    58 NPSDHPRASTIFLSKSQTDVLLPNKKVREKRKSLYVNHQHPSGPMRRKYSSCSTIFLDDS 117

Query:   109 TVSQPNLKNTVKCSALAIYYYIKNGN--SYKYLEIFDEKLHPLTRDPVPEDYDRYPPEHR 166
             TVSQPNLK T+KC ALAIYY+IKN N      L+IFDEKLHPL++  VP DYD++ PE +
Sbjct:   118 TVSQPNLKYTIKCVALAIYYHIKNRNVDGRMLLDIFDEKLHPLSKSEVPSDYDKHDPEQK 177

Query:   167 QIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDD 226
             QIY+F+RTLF+AAQLTAECAI+TLVYLERLLTYAE+DI P NWKRIVLGAILLASKVWDD
Sbjct:   178 QIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPANWKRIVLGAILLASKVWDD 237

Query:   227 QAVWNVDYCQILKDISVEDMNELERQFLEMLQFNINVPSSVYAKYYFDLRSLAESNDLTF 286
             QAVWNVDYCQILKDI+VEDMNELERQFLE+LQFNINVPSSVYAKYYFDLRSL+E+N+L+F
Sbjct:   238 QAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSLSEANNLSF 297

Query:   287 PAEPLSKERAQKLEAMSIVYAKYYFDLRSLAESNDLTFPAEPLSKER 333
             P EPLS+++AQKLEA+S +    Y DLR  A+   ++  A+ LS  R
Sbjct:   298 PLEPLSRDKAQKLEAISRLCDDKYKDLRKAAKKRSVS--ADNLSVVR 342
GO:0019901 "protein kinase binding" evidence=IEA
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
FB|FBgn0032378 CycY "Cyclin Y" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q8ND76 CCNY "Cyclin-Y" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1915224 Ccny "cyclin Y" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-732 zgc:153047 "zgc:153047" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3L5S3 I3L5S3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BBI6 CCNYL1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N7R7 CCNYL1 "Cyclin-Y-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QVS1 CCNYL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1P0V0 CCNYL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q28EL0CCYL1_XENTRNo assigned EC number0.62760.83280.9154noN/A
Q8BGU5CCNY_MOUSENo assigned EC number0.65630.81690.9032yesN/A
Q08CI4CCYL1_DANRENo assigned EC number0.62840.82750.9203noN/A
Q5U5D0CCY1A_XENLANo assigned EC number0.60550.83020.9233N/AN/A
P34624YOJ1_CAEELNo assigned EC number0.55010.81160.8571yesN/A
Q6NRF4CCY1B_XENLANo assigned EC number0.61840.83280.9154N/AN/A
Q8ND76CCNY_HUMANNo assigned EC number0.63710.84610.9354yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query377
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 6e-16
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 5e-08
cd0004388 cd00043, CYCLIN, Cyclin box fold 4e-06
pfam08613140 pfam08613, Cyclin, Cyclin 2e-05
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score = 73.3 bits (181), Expect = 6e-16
 Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 8/129 (6%)

Query: 140 EIFDEKLHPLTRDPVPEDYD----RYPPEHRQIY-KFIRTLFNAAQLTAECAIITLVYLE 194
           +I+         D  P DY        P+ R I   ++  +    +L  E   + + YL+
Sbjct: 1   DIYAYLRELEEEDRPPPDYLDQQPDINPKMRAILIDWLVEVHEEFKLLPETLYLAVNYLD 60

Query: 195 RLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDI-SVEDMNELERQF 253
           R L+   V       + + +  +L+A+K  +       D+  I  +  + E++  +E   
Sbjct: 61  RFLSKQPV--PRTKLQLVGVTCLLIAAKYEEIYPPSVEDFVYITDNAYTKEEILRMELLI 118

Query: 254 LEMLQFNIN 262
           L  L ++++
Sbjct: 119 LSTLNWDLS 127

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|204002 pfam08613, Cyclin, Cyclin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 377
KOG1675|consensus343 100.0
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 99.95
KOG1674|consensus218 99.79
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.36
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.58
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.3
KOG0655|consensus408 97.31
TIGR00569305 ccl1 cyclin ccl1. University). 97.14
KOG0653|consensus391 97.01
KOG0656|consensus335 96.97
KOG1675|consensus343 96.36
COG5024440 Cyclin [Cell division and chromosome partitioning] 95.4
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 94.54
KOG1674|consensus218 93.99
KOG4164|consensus497 93.39
KOG0834|consensus323 85.22
KOG0794|consensus264 83.07
KOG2496|consensus325 80.66
>KOG1675|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.7e-70  Score=525.02  Aligned_cols=307  Identities=55%  Similarity=0.766  Sum_probs=278.1

Q ss_pred             CCCcccccccCCCcccccc-------cCCCC-----cccccCC-CCCCccCccccccCCC-CCCCCCCCCCCCCcccccc
Q psy16565          1 MGNKTSCCSYSTPTTQRKV-------HSKSS-----RFEEYVP-EGEESVGNLQHISERE-PEDWETDPSLHPKAGTIFL   66 (377)
Q Consensus         1 mg~~~~c~~~~~~~~~~~~-------~~~~~-----~~~~~~~-~~~~~~~~l~hi~~re-~~~~~~~ps~~p~~~t~f~   66 (377)
                      |||+.+||++.+|+..++.       ++..+     ......+ +..++.-+||||++|| +.+.|.+||.||.+.+||+
T Consensus         1 ~g~~~~~~~~~~p~~~~~~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~is~~~~~~~~ee~P~~~~~~~~i~~   80 (343)
T KOG1675|consen    1 MGNMDSCCAAEPPRAEIKCSNANLQKVQLGEGVEATSHQRSTSAHAPGSGRALSHISKRETLRDSEEGPSRNPWAMDIFG   80 (343)
T ss_pred             CCCcchhhhcCCchhhhhhhhhhhhhcccccceeeeecccCCCcccCccccchhccccccccccCCCCcccCcchhhhhh
Confidence            9999999999999887632       11111     1111122 2234445999999999 8889999999999999999


Q ss_pred             ccchhhHHHHHhhhccccccccC---------CCC---CCccCCCcceeeeeCCccCCccchhHHHHHHHHHHHHhhcCC
Q psy16565         67 ERSKLEQLVRVYQYNKNFSHIAA---------DNR---PLKKSSSCSTIYLDDSTVSQPNLKNTVKCSALAIYYYIKNGN  134 (377)
Q Consensus        67 ~~s~~~~~~~~~~~~~~~s~~~~---------p~~---~~~k~sScStIflddsTvSqPnl~~tIkcvalaiyy~Ik~r~  134 (377)
                      .+|++++.++    ++|++..+.         |+-   -.++++||+||+|||+|+|+|+++.+++|+++++||||+++.
T Consensus        81 ~~s~t~~~~~----~~~~~~~i~~~~~~~g~~p~~~p~~~~~~~s~~~i~l~~~~~s~p~l~~~~~~~s~~~y~hl~~~~  156 (343)
T KOG1675|consen   81 FNSLTIGTVT----AERKEHMIPGPPQMFGILPRTSPTEGQKASSCSTIELDDSTVSQPHLKHTLKCFSLAFYYHLHNRQ  156 (343)
T ss_pred             ccCcCcceeh----hhhhccccCCCcccCCcCCCCCcccccccccccceeeccccccCcccccCcccccHHHHHHhhcCC
Confidence            9999997777    888887765         221   468999999999999999999999999999999999999997


Q ss_pred             Ccc---cccccccCCCCCCCCCCCCCCccCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHH
Q psy16565        135 SYK---YLEIFDEKLHPLTRDPVPEDYDRYPPEHRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKR  211 (377)
Q Consensus       135 ~~~---~l~IFdE~~hPLt~~~vp~~y~~~~P~~~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~R  211 (377)
                      .++   ...||++.+||++.+.+|.++..+.|++..++.||.++|.+++++++|+|++|+|++|+..+++.++||.||+|
T Consensus       157 ~d~h~~~~~~~~~~~~~~s~~~ip~~~~~~~~~~~ri~k~v~~l~~~~qlta~~aiitL~~~erl~~~~e~~~~p~~w~r  236 (343)
T KOG1675|consen  157 PDGHQRSSLCFAEVLHPVSMGAIPGIHSRSHPGLVRIKKFVRILFSWAQLTAECDIITLVYAERLLWLAERDPCPRNWSR  236 (343)
T ss_pred             CCcchhhhhhhhhhhchhhhccccccccccCcchhheehhhhhHhhhhhhhhccchHHHHhhHhhhhHhhcCCCcchhhh
Confidence            664   37999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcccCCCcccccccccCCCCHHHHHHHHHHHHHhcCCceeeCHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy16565        212 IVLGAILLASKVWDDQAVWNVDYCQILKDISVEDMNELERQFLEMLQFNINVPSSVYAKYYFDLRSLAESNDLTFPAEPL  291 (377)
Q Consensus       212 L~L~ALlLAsK~~dD~~~~N~~~a~i~~gisl~elN~LEr~FL~lL~fnL~Vs~s~y~kYyf~Lrsla~~~~l~fp~~PL  291 (377)
                      ++++++++|+|+|+|.++||.+||+|+.++|++|||+|||+||++|+||++|+.++|+||||+||+||++|++.||++| 
T Consensus       237 ~~~g~il~sskv~~dqs~wnvdycqIlKd~tveDmNe~ERqfLelLqfNinvp~svYAKyYfdlr~Lae~n~L~f~~eP-  315 (343)
T KOG1675|consen  237 AVLGEILLSSKVYDDQSVWNVDYCEILKDQSVDDMNALERQFLELLQFNINVPSSEYAKYYFDLRCLAEANPLLFPCEP-  315 (343)
T ss_pred             hhhhhheehhhhhhhhhcccHHHHHHHhhccHhhHHHHHHHHHHHHhhccCccHHHHHHHHHHHhhhcccccccccccc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cHHHHHHHHHHHHHHHhhhcccccccccCCcccCCCcCcHHHHHHHHHHHHhhhhhhh
Q psy16565        292 SKERAQKLEAMSIVYAKYYFDLRSLAESNDLTFPAEPLSKERAQKLEAMSRIMEDKML  349 (377)
Q Consensus       292 ~~~~~~~le~~ssVy~k~~fsl~~~~~s~~L~~~~~~l~~~ra~~le~~s~~~~~~~~  349 (377)
                                                           |+|+||+|+|||||.||||+.
T Consensus       316 -------------------------------------lsKeRaqkleA~sr~~EDkd~  336 (343)
T KOG1675|consen  316 -------------------------------------LSKERAQKLEAMGRDAEDKDR  336 (343)
T ss_pred             -------------------------------------chhhHHHHHHHHhhhhccchH
Confidence                                                 999999999999999999984

>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1674|consensus Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>KOG0655|consensus Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0653|consensus Back     alignment and domain information
>KOG0656|consensus Back     alignment and domain information
>KOG1675|consensus Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1674|consensus Back     alignment and domain information
>KOG4164|consensus Back     alignment and domain information
>KOG0834|consensus Back     alignment and domain information
>KOG0794|consensus Back     alignment and domain information
>KOG2496|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query377
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 4e-24
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Length = 293 Back     alignment and structure
 Score =  100 bits (248), Expect = 4e-24
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 4/159 (2%)

Query: 168 IYKFIRTLFNAAQLTAECAIITLVYLERLL-TYAEVDITPGNWKRIVLGAILLASKVWDD 226
           I+ +   L   + L     + +L Y++ L   Y +  +      R +L A  +A+K   D
Sbjct: 77  IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCD 136

Query: 227 QAVWNVDYCQILKDISVEDMNELERQFLEMLQFNINVPSSVYAKYYFDLRSLAESND--L 284
               N  Y ++   +   ++N LE  FL+ + + I            + +      D   
Sbjct: 137 SFSTNAHYAKV-GGVRCHELNILENDFLKRVNYRIIPRDHNITLCSIEQKQKKFVIDKNA 195

Query: 285 TFPAEPLSKERAQKLEAMSIVYAKYYFDLRSLAESNDLT 323
               +  S     + ++   V  KYY  +  L  S + +
Sbjct: 196 LGSLDLDSYSYVNRPKSGYNVLDKYYRRIVQLVGSFNAS 234
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query377
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 99.98
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 98.3
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 98.29
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 98.28
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 98.23
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 98.23
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 98.22
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 98.22
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 98.19
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 97.75
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 97.64
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 97.52
2ivx_A257 Cyclin-T2; transcription regulation, cell division 97.51
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 97.3
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 97.21
1c9b_A207 General transcription factor IIB; protein-DNA comp 96.76
1ais_B200 TFB TFIIB, protein (transcription initiation facto 95.14
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 81.26
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
Probab=99.98  E-value=7e-33  Score=268.16  Aligned_cols=165  Identities=18%  Similarity=0.219  Sum_probs=142.0

Q ss_pred             CCCCccCCCcceeeeeCCccCCccchhHHHHHHHHHHHHhhcCCCcccccccccCCCCCCCCCCCCCCccCCCChhhHHH
Q psy16565         91 NRPLKKSSSCSTIYLDDSTVSQPNLKNTVKCSALAIYYYIKNGNSYKYLEIFDEKLHPLTRDPVPEDYDRYPPEHRQIYK  170 (377)
Q Consensus        91 ~~~~~k~sScStIflddsTvSqPnl~~tIkcvalaiyy~Ik~r~~~~~l~IFdE~~hPLt~~~vp~~y~~~~P~~~~I~~  170 (377)
                      -.++++|+.|+.             ..+|..||.++..+|+.++....-     .   -........|+...+|.++|++
T Consensus        21 ~~lp~~f~~~~~-------------~dlv~~IA~~L~~LI~~Nd~~~~~-----~---~~~~~~~t~F~~~~~P~ISI~~   79 (293)
T 2pmi_B           21 VILPADFNKCSR-------------TDLVVLISRMLVSLIAINENSATK-----K---SDDQITLTRYHSKIPPNISIFN   79 (293)
T ss_dssp             CBCCSSGGGSCH-------------HHHHHHHHHHHHHHHHHHHCC----------------CCCCTTCCSSCCSSCHHH
T ss_pred             ccCCHHHhcCCH-------------HHHHHHHHHHHHHHHHcCcccccc-----c---cccccccccccCCCCCCCcHHH
Confidence            357777777765             579999999999999987653210     0   0001123468889999999999


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHhc-cCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCCCCHHHHHHH
Q psy16565        171 FIRTLFNAAQLTAECAIITLVYLERLLT-YAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVEDMNEL  249 (377)
Q Consensus       171 FV~~L~~~a~ls~ec~IvaLVYieRL~~-~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~gisl~elN~L  249 (377)
                      ||.+|+++++|+.+|+|+|||||+||.. .+++.+++.|||||||+|||||+|||||.+++|+.|+++ ||++++|||.|
T Consensus        80 Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV-gGisl~ELN~L  158 (293)
T 2pmi_B           80 YFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV-GGVRCHELNIL  158 (293)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-HTSCHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhc-cCcCHHHHHHH
Confidence            9999999999999999999999999999 478999999999999999999999999999999999986 89999999999


Q ss_pred             HHHHHHhcCCceeeCHHHHHHHHHHHHH
Q psy16565        250 ERQFLEMLQFNINVPSSVYAKYYFDLRS  277 (377)
Q Consensus       250 Er~FL~lL~fnL~Vs~s~y~kYyf~Lrs  277 (377)
                      |++||.+|+|+|+|+.++|++|||+++.
T Consensus       159 E~eFL~lLdf~L~V~~ee~~~cy~E~~~  186 (293)
T 2pmi_B          159 ENDFLKRVNYRIIPRDHNITLCSIEQKQ  186 (293)
T ss_dssp             HHHHHHTTTTCCSCCTTHHHHHHHHSCC
T ss_pred             HHHHHHHcCCceeeCHHHHHHHHHHHhh
Confidence            9999999999999999999999997743
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 377
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 5e-05
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 0.002
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 0.004
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 5e-05
 Identities = 13/102 (12%), Positives = 43/102 (42%), Gaps = 3/102 (2%)

Query: 163 PEHRQI-YKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLAS 221
           P+ R I   ++  +    +L  E   +   + +R +   E  +     + I + ++ +A+
Sbjct: 40  PKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQEN-VVKTLLQLIGISSLFIAA 98

Query: 222 KVWDDQAVWNVDYCQILKD-ISVEDMNELERQFLEMLQFNIN 262
           K+ +        +  +     S +++  +E   ++ L++ ++
Sbjct: 99  KLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLS 140
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query377
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 98.75
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 98.63
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 98.6
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 98.49
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 98.48
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 98.26
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 98.15
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 98.07
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 83.77
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.7e-08  Score=85.17  Aligned_cols=96  Identities=10%  Similarity=0.216  Sum_probs=84.3

Q ss_pred             hhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCC-CCHH
Q psy16565        166 RQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKD-ISVE  244 (377)
Q Consensus       166 ~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~g-isl~  244 (377)
                      ..+-+|+..+....+++.+++-+|.-|+||++.... .+.+....-+-++|+.||+|+-+.....-.+++.+.+| ++.+
T Consensus        44 ~~lidW~~~v~~~~~l~~et~~lAv~llDryl~~~~-~v~~~~lqL~a~acL~IAsK~ee~~~~~~~~l~~~~~~~~t~~  122 (140)
T d1w98b2          44 AILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQE-NVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGD  122 (140)
T ss_dssp             HHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCC-CCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHH
T ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhccc-cccHHHHhHHHHHHHHHHHHHcccCCCCHHHHHHHHcCCCCHH
Confidence            457899999999999999999999999999987432 23466788999999999999999888888888887666 9999


Q ss_pred             HHHHHHHHHHHhcCCcee
Q psy16565        245 DMNELERQFLEMLQFNIN  262 (377)
Q Consensus       245 elN~LEr~FL~lL~fnL~  262 (377)
                      |+.+||+..|..|+|+|+
T Consensus       123 ei~~mE~~IL~~L~~~Ln  140 (140)
T d1w98b2         123 EILTMELMIMKALKWRLS  140 (140)
T ss_dssp             HHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHHHHHHHHCCCcCC
Confidence            999999999999999985
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure