Psyllid ID: psy16571

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MEKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGSRVRALFIYKNKK
Secondary Structure (PSIPRED)
ccccccccccccEEcccccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccccccccccEEEccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccEEcccccc
Secondary Structure Prediction (SSPRO)
ccccHccHHHccEEEccccccEEEccccHccccHcccEEEccccccccEcccHHHcccccccEEEcccccccEccccccccHHccEEEccccccccccHHHHHHHHHHHccccccEcccHHHHHccccccccHHHcEEccEEEEEEcccc
Coil and Loop (DISEMBL)
mekevkglSYLKRLEItgasnltrvrkgafadnlnletltlnknpklkiieedalvglpnlyhlnlkenaFTSFSesmlawpelrtidiaenpiecgcNILWLREMLVRrntsavfcnspaplkyKSLISLSAEDLGSRVRALFIYKNKK
Flexible Loop (DISEMBL)
mekevkglsylkrleitgasnltrvrkgafadnlnletltlnknpklKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGSRVRALFIYKNKK
Low Complexity Region (SEG)
MEKEVKGLSYLKRLEITGASNLTRVRKGAFADnlnletltlnknpklkIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGSRVRALFIYKNKK
Disordered region (IsUnstruct)
*******LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGSRVRALFIY****
Disordered Region (DISOPRED)
MEKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGSRVRAL*******
Disordered Region (DISEMBL)
MEKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGSRVRALFIYKNKK
Disordered Region (DISPRO)
**KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGSRVRALFIYKN**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGSRVRALFIYKNKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
Q7TT36	1310	Probable G-protein couple	yes	N/A	0.853	0.097	0.315	2e-09
O88279	1531	Slit homolog 1 protein OS	no	N/A	0.746	0.073	0.341	2e-08
Q80TR4	1531	Slit homolog 1 protein OS	no	N/A	0.746	0.073	0.341	4e-08
O75093	1534	Slit homolog 1 protein OS	yes	N/A	0.853	0.083	0.314	8e-08
Q8IWK6	1321	Probable G-protein couple	no	N/A	0.853	0.096	0.293	8e-08
O94898	1065	Leucine-rich repeats and	no	N/A	0.893	0.125	0.268	1e-07
P70193	1091	Leucine-rich repeats and	no	N/A	0.84	0.115	0.345	2e-07
Q96JA1	1093	Leucine-rich repeats and	no	N/A	0.873	0.119	0.326	3e-07
Q8C031	640	Leucine-rich repeat-conta	no	N/A	0.746	0.175	0.294	4e-07
Q96PE1	1338	G-protein coupled recepto	no	N/A	0.853	0.095	0.276	4e-07

>sp|Q7TT36|GP125_MOUSE Probable G-protein coupled receptor 125 OS=Mus musculus GN=Gpr125 PE=2 SV=3

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
           GLS L+RL++   + ++R+  GAF    +L+ L L  N ++  +  D   GL NL  LNL
Sbjct: 92  GLSLLERLDLRN-NLISRIAPGAFWGLSSLKRLDLTNN-RIGCLNADVFRGLTNLVRLNL 149

Query: 67  KENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRNTSA--VFCNSPAPL 123
             N FTS S+    +   LR+++     + C CNILW+   +  RN +     C  P  L
Sbjct: 150 SGNLFTSLSQGTFDYLGSLRSLEFQTEYLLCDCNILWMHRWVKERNITVRDTRCVYPKSL 209

Query: 124 KYKSLISLSAEDL 136
           + + +  +  E L
Sbjct: 210 QAQPVTGVKQELL 222

Orphan receptor.
Mus musculus (taxid: 10090)

>sp|O88279|SLIT1_RAT Slit homolog 1 protein OS=Rattus norvegicus GN=Slit1 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 5/117 (4%)

Query: 11  LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENA 70
           L RL+++  ++L  V + AF    +L+ L L+KN ++  IEE A   L  L  L L  N 
Sbjct: 135 LSRLDLS-ENSLQAVPRKAFRGATDLKNLQLDKN-QISCIEEGAFRALRGLEVLTLNNNN 192

Query: 71  FTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF--CNSPAPLK 124
            T+   S     P+LRT  +  N + C C++ WL + L +R T  +F  C+ PA L+
Sbjct: 193 ITTIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQCSGPASLR 249

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.

Rattus norvegicus (taxid: 10116)

>sp|Q80TR4|SLIT1_MOUSE Slit homolog 1 protein OS=Mus musculus GN=Slit1 PE=1 SV=2

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 5/117 (4%)

Query: 11  LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENA 70
           L RL+++  + L  V + AF    +L+ L L+KN ++  IEE A   L  L  L L  N 
Sbjct: 135 LSRLDLS-ENFLQAVPRKAFRGATDLKNLQLDKN-RISCIEEGAFRALRGLEVLTLNNNN 192

Query: 71  FTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF--CNSPAPLK 124
            T+   S     P+LRT  +  N + C C++ WL + L +R T  +F  C+ PA L+
Sbjct: 193 ITTIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQCSGPASLR 249

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions (By similarity). SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.

Mus musculus (taxid: 10090)

>sp|O75093|SLIT1_HUMAN Slit homolog 1 protein OS=Homo sapiens GN=SLIT1 PE=2 SV=4

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 12/140 (8%)

Query: 11  LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENA 70
           L RL+++  + +  + + AF    +L+ L L+KN ++  IEE A   L  L  L L  N 
Sbjct: 135 LSRLDLS-ENAIQAIPRKAFRGATDLKNLQLDKN-QISCIEEGAFRALRGLEVLTLNNNN 192

Query: 71  FTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF--CNSPAPLK--- 124
            T+   S     P+LRT  +  N + C C++ WL + L +R T  +F  C+ PA L+   
Sbjct: 193 ITTIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQCSGPASLRGLN 252

Query: 125 ----YKSLISLSAEDLGSRV 140
                KS  S S +    RV
Sbjct: 253 VAEVQKSEFSCSGQGEAGRV 272

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions (By similarity). SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.

Homo sapiens (taxid: 9606)

>sp|Q8IWK6|GP125_HUMAN Probable G-protein coupled receptor 125 OS=Homo sapiens GN=GPR125 PE=1 SV=2

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 5/133 (3%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
           GLS L+RL++   + ++ +  GAF    +L+ L L  N ++  +  D   GL NL  LNL
Sbjct: 103 GLSLLERLDLRN-NLISSIDPGAFWGLSSLKRLDLTNN-RIGCLNADIFRGLTNLVRLNL 160

Query: 67  KENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRNTSA--VFCNSPAPL 123
             N F+S S+    +   LR+++     + C CNILW+   +  +N +     C  P  L
Sbjct: 161 SGNLFSSLSQGTFDYLASLRSLEFQTEYLLCDCNILWMHRWVKEKNITVRDTRCVYPKSL 220

Query: 124 KYKSLISLSAEDL 136
           + + +  +  E L
Sbjct: 221 QAQPVTGVKQELL 233

Orphan receptor.

Homo sapiens (taxid: 9606)

>sp|O94898|LRIG2_HUMAN Leucine-rich repeats and immunoglobulin-like domains protein 2 OS=Homo sapiens GN=LRIG2 PE=2 SV=3

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 30/164 (18%)

Query: 2   EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP---------------- 45
           E    GLS L+RL + G + +T +  G F    NL+TL L  N                 
Sbjct: 328 ESAFVGLSLLERLNL-GDNRVTHIADGVFRFLSNLQTLDLRNNEISWAIEDASEAFAGLT 386

Query: 46  ----------KLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 95
                     ++K I + A +GL +L HL+L  NA  S  E+  +   L+ + +  + + 
Sbjct: 387 SLTKLILQGNQIKSITKKAFIGLESLEHLDLNNNAIMSIQENAFSQTHLKELILNTSSLL 446

Query: 96  CGCNILWLREMLVRRN---TSAVFCNSPAPLKYKSLISLSAEDL 136
           C C++ WL + LV  N   +  V C  P  L  +S++++  +D 
Sbjct: 447 CDCHLKWLLQWLVDNNFQHSVNVSCAHPEWLAGQSILNVDLKDF 490

Homo sapiens (taxid: 9606)

>sp|P70193|LRIG1_MOUSE Leucine-rich repeats and immunoglobulin-like domains protein 1 OS=Mus musculus GN=Lrig1 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 64/139 (46%), Gaps = 13/139 (9%)

Query: 2   EKEVKGLSYLKRL-----EITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALV 56
           E   KGL  L+ L     EI+G    T    GAF    NL  LTL  N K+K + + A  
Sbjct: 350 EGAFKGLKSLRVLDLDHNEISGTIEDT---SGAFTGLDNLSKLTLFGN-KIKSVAKRAFS 405

Query: 57  GLPNLYHLNLKENAFTSFS-ESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAV 115
           GL +L HLNL ENA  S   ++      L+ + I+     C C + WL   L+ R   A 
Sbjct: 406 GLESLEHLNLGENAIRSVQFDAFAKMKNLKELYISSESFLCDCQLKWLPPWLMGRMLQAF 465

Query: 116 F---CNSPAPLKYKSLISL 131
               C  P  LK +S+ S+
Sbjct: 466 VTATCAHPESLKGQSIFSV 484

Act as a feedback negative regulator of signaling by receptor tyrosine kinases, through a mechanism that involves enhancement of receptor ubiquitination and accelerated intracellular degradation.

Mus musculus (taxid: 10090)

>sp|Q96JA1|LRIG1_HUMAN Leucine-rich repeats and immunoglobulin-like domains protein 1 OS=Homo sapiens GN=LRIG1 PE=1 SV=2

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/144 (32%), Positives = 66/144 (45%), Gaps = 13/144 (9%)

Query: 2   EKEVKGLSYLKRL-----EITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALV 56
           E   KGL  L+ L     EI+G    T    GAF+   +L  LTL  N K+K + + A  
Sbjct: 348 EGAFKGLRSLRVLDLDHNEISGTIEDT---SGAFSGLDSLSKLTLFGN-KIKSVAKRAFS 403

Query: 57  GLPNLYHLNLKENAFTSFS-ESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAV 115
           GL  L HLNL  NA  S   ++ +    L+ + I+ +   C C + WL   L+ R   A 
Sbjct: 404 GLEGLEHLNLGGNAIRSVQFDAFVKMKNLKELHISSDSFLCDCQLKWLPPWLIGRMLQAF 463

Query: 116 F---CNSPAPLKYKSLISLSAEDL 136
               C  P  LK +S+ S+  E  
Sbjct: 464 VTATCAHPESLKGQSIFSVPPESF 487

Act as a feedback negative regulator of signaling by receptor tyrosine kinases, through a mechanism that involves enhancement of receptor ubiquitination and accelerated intracellular degradation.

Homo sapiens (taxid: 9606)

>sp|Q8C031|LRC4C_MOUSE Leucine-rich repeat-containing protein 4C OS=Mus musculus GN=Lrrc4c PE=1 SV=2

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 7/119 (5%)

Query: 11  LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENA 70
           L  L+++G ++L+ +R G+F   ++L+ L + ++ ++++IE +A   L +L  +NL  N 
Sbjct: 221 LDELDLSG-NHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNN 278

Query: 71  FTSFSESMLA-WPELRTIDIAENPIECGCNILWL----REMLVRRNTSAVFCNSPAPLK 124
            T     +      L  I +  NP  C C+ILWL    R+M          CN+P  LK
Sbjct: 279 LTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIRDMAPSNTACCARCNTPPNLK 337

May promote neurite outgrowth of developing thalamic neurons.

Mus musculus (taxid: 10090)

>sp|Q96PE1|GP124_HUMAN G-protein coupled receptor 124 OS=Homo sapiens GN=GPR124 PE=1 SV=2

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 6/134 (4%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
           GLS L++L++   + ++ V+ GAF     L+ L L+ N ++  +  +   GLP L  LN+
Sbjct: 106 GLSLLEKLDLRN-NIISTVQPGAFLGLGELKRLDLSNN-RIGCLTSETFQGLPRLLRLNI 163

Query: 67  KENAFTSFSESML-AWPELRTIDIAENPIECGCNILWLREMLVRRN---TSAVFCNSPAP 122
             N F+S    +    P L+ +D+    + C C++ WL      R+   +    C  P+ 
Sbjct: 164 SGNIFSSLQPGVFDELPALKVVDLGTEFLTCDCHLRWLLPWAQNRSLQLSEHTLCAYPSA 223

Query: 123 LKYKSLISLSAEDL 136
           L  ++L SL    L
Sbjct: 224 LHAQALGSLQEAQL 237

Endothelial receptor that acts as an essential regulator of CNS angiogenesis. Required for normal endothelial cell sprouting and migration in the forebrain and neural tube.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
242007469	544	tartan protein, putative [Pediculus huma	0.873	0.240	0.572	2e-37
328696893	628	PREDICTED: insulin-like growth factor-bi	0.873	0.208	0.541	3e-35
322799077	556	hypothetical protein SINV_04557 [Solenop	0.86	0.232	0.553	4e-35
332017189	760	Leucine-rich repeat neuronal protein 2 [	0.86	0.169	0.537	5e-35
307207257	786	Leucine-rich repeats and immunoglobulin-	0.86	0.164	0.545	1e-34
345493135	568	PREDICTED: insulin-like growth factor-bi	0.88	0.232	0.537	3e-34
110750681	755	PREDICTED: slit homolog 1 protein-like [	0.86	0.170	0.537	3e-34
340710155	850	PREDICTED: hypothetical protein LOC10064	0.86	0.151	0.530	5e-34
270007914	536	hypothetical protein TcasGA2_TC014658 [T	0.906	0.253	0.529	7e-34
91083775	586	PREDICTED: similar to leucine-rich repea	0.906	0.232	0.529	9e-34

>gi|242007469|ref|XP_002424562.1| tartan protein, putative [Pediculus humanus corporis] gi|212508005|gb|EEB11824.1| tartan protein, putative [Pediculus humanus corporis]

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/131 (57%), Positives = 104/131 (79%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
           GLS L+RL+I+GA +L +V K AF DNLNLETL L+ N +L  IEE AL GLPNL +L L
Sbjct: 329 GLSNLRRLDISGAPHLEKVEKDAFRDNLNLETLVLSSNKRLSQIEEGALAGLPNLKNLVL 388

Query: 67  KENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYK 126
           ++NAF+SFSES+++W EL  IDIAENPIEC C++LWL+E+L+++N S + C SP+ LK +
Sbjct: 389 RDNAFSSFSESLVSWLELHEIDIAENPIECRCSLLWLKELLIKKNISQILCASPSHLKDR 448

Query: 127 SLISLSAEDLG 137
            L +L+++D+G
Sbjct: 449 RLSTLTSDDMG 459

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328696893|ref|XP_003240168.1| PREDICTED: insulin-like growth factor-binding protein complex acid labile subunit-like [Acyrthosiphon pisum]

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/131 (54%), Positives = 99/131 (75%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           KGL+ L+ ++++GAS L+ ++KG F DNLNLET+  + N +L  IE  A +GLPNL +L 
Sbjct: 291 KGLANLRSIDVSGASQLSVIKKGVFNDNLNLETINFSSNKQLATIENGAFMGLPNLRNLI 350

Query: 66  LKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKY 125
           ++ NAFTSF+E+M+ W EL+ ID+ ENP+ C C++LWL+E+L RRNTS V C SPAPLK 
Sbjct: 351 MRNNAFTSFAEAMVTWQELQQIDLTENPLVCECSVLWLKELLARRNTSHVNCASPAPLKD 410

Query: 126 KSLISLSAEDL 136
           K L SL ++DL
Sbjct: 411 KPLNSLGSDDL 421

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799077|gb|EFZ20530.1| hypothetical protein SINV_04557 [Solenopsis invicta]

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 98/132 (74%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           +GLS LK+L+++GA  LT V KGAF+DN NLETL LN N +L  +E+ +L GLPNL HL 
Sbjct: 298 QGLSTLKKLDVSGAKLLTTVEKGAFSDNANLETLVLNSNKRLATMEDGSLAGLPNLRHLM 357

Query: 66  LKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKY 125
           L++NAF +FSES++AW ELR +D++ENPI C C+ LWL E+LV RN+S V C  P   K 
Sbjct: 358 LRDNAFVTFSESLVAWNELRRLDLSENPIVCDCSQLWLAEILVPRNSSPVICAEPPESKG 417

Query: 126 KSLISLSAEDLG 137
           K +  +SA++LG
Sbjct: 418 KPIKGMSADELG 429

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017189|gb|EGI57982.1| Leucine-rich repeat neuronal protein 2 [Acromyrmex echinatior]

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 71/132 (53%), Positives = 98/132 (74%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           +GLS LK+L+++GA   T V KGAF+DN NLETL LN N +L ++EE +L GLPNL HL 
Sbjct: 300 QGLSTLKKLDVSGAKLFTTVEKGAFSDNANLETLVLNSNKRLAVMEEGSLAGLPNLRHLM 359

Query: 66  LKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKY 125
           L++NAF +FSES++AW ELR +D++ENP+ C C+ LWL E+LV RN+S V C  P   K 
Sbjct: 360 LRDNAFITFSESLVAWNELRRLDLSENPLVCDCSQLWLAEILVPRNSSPVICAEPPESKS 419

Query: 126 KSLISLSAEDLG 137
           K +  ++A++LG
Sbjct: 420 KPIKGMTADELG 431

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207257|gb|EFN85034.1| Leucine-rich repeats and immunoglobulin-like domains protein 3 [Harpegnathos saltator]

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/132 (54%), Positives = 98/132 (74%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           +GLS LK+L+++GA  LT V KGAF+DN NLETL LN N +L  +E+ AL GLPNL HL 
Sbjct: 300 QGLSTLKKLDVSGAKLLTTVEKGAFSDNANLETLVLNSNKRLVTMEDGALAGLPNLRHLM 359

Query: 66  LKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKY 125
           L++NAF  FSES++AW ELR +D++ENP+ C C++LWL E+LV RN+S V C  PA  K 
Sbjct: 360 LRDNAFVMFSESLVAWNELRRLDLSENPLLCDCSLLWLAEVLVPRNSSPVICAEPAESKG 419

Query: 126 KSLISLSAEDLG 137
           K +  ++ ++LG
Sbjct: 420 KPIKGMTPDELG 431

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493135|ref|XP_003427009.1| PREDICTED: insulin-like growth factor-binding protein complex acid labile subunit-like [Nasonia vitripennis]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 98/132 (74%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           KGLS LK+LE++GA+ LT V++GAF+DN NLE L LN N +L  +E+ AL GLPNL HL 
Sbjct: 305 KGLSNLKKLEVSGATLLTTVKRGAFSDNGNLEILVLNSNKRLSSLEDGALAGLPNLRHLM 364

Query: 66  LKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKY 125
           L++N F SFSES++AW ELR +D++ENP+ C C++LWL ++L  RN+S V C  P  L+ 
Sbjct: 365 LRDNNFASFSESLVAWNELRRLDLSENPLVCDCSVLWLADVLAPRNSSPVICAEPRDLQG 424

Query: 126 KSLISLSAEDLG 137
           KSL  +  ++LG
Sbjct: 425 KSLKGMRPDELG 436

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110750681|ref|XP_396683.3| PREDICTED: slit homolog 1 protein-like [Apis mellifera]

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 98/132 (74%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           +GLS LK+L+I+ A  LT V +GAF+DN NLETL LN N +L  +E+ +L GLPNL HL 
Sbjct: 306 QGLSKLKKLDISAAKLLTTVERGAFSDNANLETLVLNSNKRLTTMEDGSLAGLPNLKHLM 365

Query: 66  LKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKY 125
           L++NAFT FSES++AW ELR +D++ENP+ C C++LWL E+LV RN+S V C  PA  K 
Sbjct: 366 LRDNAFTGFSESLVAWNELRRLDLSENPLVCDCSLLWLSEILVPRNSSPVLCLEPAESKG 425

Query: 126 KSLISLSAEDLG 137
           K +  ++ ++LG
Sbjct: 426 KPIKGMTPDELG 437

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710155|ref|XP_003393661.1| PREDICTED: hypothetical protein LOC100643966 [Bombus terrestris]

 Score =  149 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 70/132 (53%), Positives = 97/132 (73%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           +GLS LK+L+I+ A  LT V +GAF+DN NLETL LN N +L  +E+ +L GLPNL HL 
Sbjct: 400 QGLSKLKKLDISAAKLLTTVERGAFSDNANLETLVLNSNKRLTTMEDGSLAGLPNLRHLM 459

Query: 66  LKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKY 125
           L++NAFT FSES++AW ELR +D++ENP+ C C++LWL E+LV RN+S V C  P   K 
Sbjct: 460 LRDNAFTGFSESLVAWNELRRLDLSENPLVCDCSLLWLAEVLVPRNSSPVLCAEPPESKG 519

Query: 126 KSLISLSAEDLG 137
           K +  ++ ++LG
Sbjct: 520 KPIKGMTPDELG 531

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007914|gb|EFA04362.1| hypothetical protein TcasGA2_TC014658 [Tribolium castaneum]

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 72/136 (52%), Positives = 100/136 (73%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           KGLS L++L+ITGA NL +V KGAF+DNLNLE + L  N KL+ +EE ALVGLPNL HL 
Sbjct: 321 KGLSNLRKLDITGAPNLQKVEKGAFSDNLNLEFIVLASNKKLEELEEGALVGLPNLKHLV 380

Query: 66  LKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKY 125
           LK+N+F + SESM++W ELR++++ +NPI C C++LWL  ++  +N S V C+ P  L+ 
Sbjct: 381 LKDNSFKALSESMVSWNELRSLEMTDNPIVCDCHLLWLSNLISMKNLSNVQCSMPLALRE 440

Query: 126 KSLISLSAEDLGSRVR 141
           + L +LS +DLG   R
Sbjct: 441 RPLRTLSPDDLGCSFR 456

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083775|ref|XP_972275.1| PREDICTED: similar to leucine-rich repeat-containing protein 4B [Tribolium castaneum]

 Score =  148 bits (373), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 72/136 (52%), Positives = 100/136 (73%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           KGLS L++L+ITGA NL +V KGAF+DNLNLE + L  N KL+ +EE ALVGLPNL HL 
Sbjct: 321 KGLSNLRKLDITGAPNLQKVEKGAFSDNLNLEFIVLASNKKLEELEEGALVGLPNLKHLV 380

Query: 66  LKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKY 125
           LK+N+F + SESM++W ELR++++ +NPI C C++LWL  ++  +N S V C+ P  L+ 
Sbjct: 381 LKDNSFKALSESMVSWNELRSLEMTDNPIVCDCHLLWLSNLISMKNLSNVQCSMPLALRE 440

Query: 126 KSLISLSAEDLGSRVR 141
           + L +LS +DLG   R
Sbjct: 441 RPLRTLSPDDLGCSFR 456

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
FB|FBgn0010452	737	trn "tartan" [Drosophila melan	0.873	0.177	0.382	7.6e-20
FB|FBgn0023095	748	caps "capricious" [Drosophila	0.873	0.175	0.385	4.1e-18
UNIPROTKB|D3ZZF2	1307	D3ZZF2 "Uncharacterized protei	0.84	0.096	0.282	4.2e-07
MGI|MGI:1917943	1310	Gpr125 "G protein-coupled rece	0.84	0.096	0.282	4.2e-07
FB|FBgn0264089	1504	sli "slit" [Drosophila melanog	0.566	0.056	0.318	4.4e-07
UNIPROTKB|F1P4J3	526	LGI1 "Uncharacterized protein"	0.853	0.243	0.223	4.5e-07
WB|WBGene00019351	586	lron-7 [Caenorhabditis elegans	0.533	0.136	0.268	1.7e-06
ZFIN|ZDB-GENE-041210-129	858	lrrc4.1 "leucine rich repeat c	0.88	0.153	0.288	3e-06
ZFIN|ZDB-GENE-080327-25	729	lrrc4ba "leucine rich repeat c	0.76	0.156	0.280	3.9e-06
ZFIN|ZDB-GENE-091116-44	745	lrrc4bb "leucine rich repeat c	0.873	0.175	0.276	4.1e-06

FB|FBgn0010452 trn "tartan" [Drosophila melanogaster (taxid:7227)]

 Score = 246 (91.7 bits), Expect = 7.6e-20, P = 7.6e-20
 Identities = 52/136 (38%), Positives = 74/136 (54%)

Query:     7 GLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNL 66
             GL  LKRLE+ GA  L RV  GAF+D                 ++E AL GL  L H+ L
Sbjct:   297 GLKQLKRLEVNGALRLKRVMTGAFSDNGNLEYLNLSSNKMLLEVQEGALSGLSQLKHVVL 356

Query:    67 KENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA-----VFCNSPA 121
             K NA TS +E +  W +L+T+D++ENP+ C C ++WL  +LV +N S      + C  P 
Sbjct:   357 KANALTSLAEGLFPWKDLQTLDLSENPLSCDCRVMWLHNLLVAKNASQDDVSELLCEFPE 416

Query:   122 PLKYKSLISLSAEDLG 137
              L+ +SL  L+   +G
Sbjct:   417 RLRGESLRHLNPAMMG 432

GO:0005886 "plasma membrane" evidence=NAS

GO:0007155 "cell adhesion" evidence=NAS

GO:0007424 "open tracheal system development" evidence=IMP

GO:0016477 "cell migration" evidence=TAS

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

FB|FBgn0023095 caps "capricious" [Drosophila melanogaster (taxid:7227)]

 Score = 230 (86.0 bits), Expect = 4.1e-18, P = 4.1e-18
 Identities = 52/135 (38%), Positives = 70/135 (51%)

Query:     7 GLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNL 66
             GL  L+ LE+TGA  L RV  GAF+                  +   AL GLP+L  + L
Sbjct:   310 GLRELRHLELTGAQRLRRVESGAFSGNTNLEHLNLSSNKQLNELSSIALGGLPHLSTVVL 369

Query:    67 KENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA----VFCNSPAP 122
             K N  +S  E ++ W +L+T+D++ENP EC C +LWLR +LV RN S     V C  P  
Sbjct:   370 KANQLSSLDEGLVPWADLQTLDLSENPFECDCRLLWLRHLLVSRNASGQYAPVICAYPTA 429

Query:   123 LKYKSLISLSAEDLG 137
             L+   L  L+   LG
Sbjct:   430 LRDLPLAHLAEPLLG 444

GO:0007411 "axon guidance" evidence=IMP

GO:0007424 "open tracheal system development" evidence=IMP

GO:0016020 "membrane" evidence=NAS

GO:0007155 "cell adhesion" evidence=NAS

GO:0016477 "cell migration" evidence=TAS

GO:0072499 "photoreceptor cell axon guidance" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0042995 "cell projection" evidence=IDA

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|D3ZZF2 D3ZZF2 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 130 (50.8 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 37/131 (28%), Positives = 58/131 (44%)

Query:     7 GLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNL 66
             GLS L+RL++   + ++R+  GAF                   +  D   GL NL  LNL
Sbjct:    89 GLSLLERLDLRN-NLISRIAPGAFWGLSSLKRLDLTNNRIG-CLNADVFRGLTNLVRLNL 146

Query:    67 KENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRNTSA--VFCNSPAPL 123
               N FTS S+    +   LR+++     + C CNILW+   +  RN +     C  P  L
Sbjct:   147 SGNLFTSLSQGTFDYLGSLRSLEFQTEYLLCDCNILWMHRWVKERNITVRDTRCVYPKSL 206

Query:   124 KYKSLISLSAE 134
             + + +  +  E
Sbjct:   207 QAQPVTGVKQE 217

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1917943 Gpr125 "G protein-coupled receptor 125" [Mus musculus (taxid:10090)]

 Score = 130 (50.8 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 37/131 (28%), Positives = 58/131 (44%)

Query:     7 GLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNL 66
             GLS L+RL++   + ++R+  GAF                   +  D   GL NL  LNL
Sbjct:    92 GLSLLERLDLRN-NLISRIAPGAFWGLSSLKRLDLTNNRIG-CLNADVFRGLTNLVRLNL 149

Query:    67 KENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRNTSA--VFCNSPAPL 123
               N FTS S+    +   LR+++     + C CNILW+   +  RN +     C  P  L
Sbjct:   150 SGNLFTSLSQGTFDYLGSLRSLEFQTEYLLCDCNILWMHRWVKERNITVRDTRCVYPKSL 209

Query:   124 KYKSLISLSAE 134
             + + +  +  E
Sbjct:   210 QAQPVTGVKQE 220

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007166 "cell surface receptor signaling pathway" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0264089 sli "slit" [Drosophila melanogaster (taxid:7227)]

 Score = 113 (44.8 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
 Identities = 28/88 (31%), Positives = 44/88 (50%)

Query:    50 IEEDALVGLPNLYHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCNILWLREMLV 108
             I +DA   L +L  L+L +N   S +     A   ++T+ +A+NP  C CN+ WL + L 
Sbjct:   433 IRKDAFRDLHSLSLLSLYDNNIQSLANGTFDAMKSIKTVHLAKNPFICDCNLRWLADYLH 492

Query:   109 RR--NTSAVFCNSPAPLKYKSLISLSAE 134
             +    TS   C SP  +  + + SL  E
Sbjct:   493 KNPIETSGARCESPKRMHRRRIESLREE 520

GO:0031012 "extracellular matrix" evidence=IDA

GO:0008347 "glial cell migration" evidence=IMP

GO:0050919 "negative chemotaxis" evidence=IMP

GO:0007509 "mesoderm migration involved in gastrulation" evidence=IMP

GO:0005578 "proteinaceous extracellular matrix" evidence=TAS

GO:0008078 "mesodermal cell migration" evidence=IMP

GO:0007411 "axon guidance" evidence=IGI;IMP;IPI

GO:0035385 "Roundabout signaling pathway" evidence=IGI

GO:0030182 "neuron differentiation" evidence=IMP

GO:0010632 "regulation of epithelial cell migration" evidence=IMP

GO:2000274 "regulation of epithelial cell migration, open tracheal system" evidence=IMP

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007427 "epithelial cell migration, open tracheal system" evidence=IMP

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0007432 "salivary gland boundary specification" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0022409 "positive regulation of cell-cell adhesion" evidence=IMP

GO:0071666 "Slit-Robo signaling complex" evidence=IDA

GO:0048495 "Roundabout binding" evidence=IPI

GO:0008201 "heparin binding" evidence=IDA

GO:0003151 "outflow tract morphogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0007502 "digestive tract mesoderm development" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|F1P4J3 LGI1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 125 (49.1 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 31/139 (22%), Positives = 64/139 (46%)

Query:    20 SNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESML 79
             S  T++ +G+F                  +I +DA +GLP+L +L ++ N+    + ++ 
Sbjct:    69 SAFTKIPEGSFL-LTPSLQLLLFTSNTFDVISDDAFMGLPHLEYLFIENNSINLANNNLQ 127

Query:    80 AWPE--------LRTIDIAENPIECGCNILWLREMLVRRNTSA--VFCNSPAPLKYKSLI 129
             + P+        L  +D+  N   C C + WL E L   N +   ++C SP   K + + 
Sbjct:   128 SLPKDIFKGLDSLTNVDLRGNAFNCDCKLKWLVEWLGSTNATVEDIYCESPPEYKKRKIN 187

Query:   130 SLSAEDLGSRVRALFIYKN 148
             SLS+++    +    ++++
Sbjct:   188 SLSSKEFDCIITEFEVFQS 206

GO:0005102 "receptor binding" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

WB|WBGene00019351 lron-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 94 (38.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
 Identities = 22/82 (26%), Positives = 41/82 (50%)

Query:    64 LNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLRE--MLVRRNTSAVFCNSPA 121
             L +  +  ++ SE M+ +  L+T  +  NP  C C+  ++ E     ++++ A  C SPA
Sbjct:   435 LQIHNSNISTISEHMVDYDNLKTFQVGGNPWNCNCDTQFMLEEKFAFKQDSVAPKCTSPA 494

Query:   122 PLKYKSLISLSAEDLGSRVRAL 143
              L  + L+++ A D     R L
Sbjct:   495 GLNGRLLVTVRASDACEDARFL 516

GO:0004623 "phospholipase A2 activity" evidence=IEA

GO:0006644 "phospholipid metabolic process" evidence=IEA

GO:0016042 "lipid catabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-041210-129 lrrc4.1 "leucine rich repeat containing 4.1" [Danio rerio (taxid:7955)]

 Score = 120 (47.3 bits), Expect = 3.0e-06, P = 3.0e-06
 Identities = 41/142 (28%), Positives = 63/142 (44%)

Query:    11 LKRLEITGASNL-TRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKEN 69
             L+ LEI+   NL   ++ G+F                  +IE +A   L +L  LNL  N
Sbjct:   219 LEELEIS--ENLFPEIKPGSFRGLSSLKKLWIMNSQIG-LIERNAFDDLASLVELNLAHN 275

Query:    70 AFTSFSESMLA-WPELRTIDIAENPIECGCNILWL----REMLVRRNTSAVFCNSPAPLK 124
               +S    +      L  + +  NP  CGC+ LWL    RE +   +T    C+SPA ++
Sbjct:   276 NLSSLPHDLYTPLKYLVELHLHHNPWNCGCDSLWLARWLREYIPTNSTCCGRCHSPAHMR 335

Query:   125 YKSLISLSAEDLGS-RVRALFI 145
              + L+ L   D G+ +  A FI
Sbjct:   336 GRQLVELDRGDTGAMQCSAPFI 357

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-080327-25 lrrc4ba "leucine rich repeat containing 4Ba" [Danio rerio (taxid:7955)]

 Score = 118 (46.6 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 34/121 (28%), Positives = 53/121 (43%)

Query:    11 LKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENA 70
             L+ LE++G + L  +R G+F                  +IE +A   L NL  LNL  N+
Sbjct:   214 LEELELSG-NRLEIIRPGSF-QGLESLRKLWLMHSQMSVIERNAFDDLKNLEELNLSHNS 271

Query:    71 FTSFSESMLA-WPELRTIDIAENPIECGCNILWL----REMLVRRNTSAVFCNSPAPLKY 125
               S    +     +L  + +  NP  C C++LWL    +E +    T    C++P  LK 
Sbjct:   272 LHSLPHDLFTPLQKLERVHLNHNPWVCNCDVLWLSWWLKETVPSNTTCCARCHAPPYLKG 331

Query:   126 K 126
             K
Sbjct:   332 K 332

GO:0051965 "positive regulation of synapse assembly" evidence=IEA

ZFIN|ZDB-GENE-091116-44 lrrc4bb "leucine rich repeat containing 4Bb" [Danio rerio (taxid:7955)]

 Score = 118 (46.6 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 39/141 (27%), Positives = 61/141 (43%)

Query:     3 KEVKGLSYLKRLE---ITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLP 59
             K+V  L+ L RLE   ++G + L  VR G+F                  +IE +A   L 
Sbjct:   221 KDVPNLTPLVRLEELELSG-NQLGVVRPGSF-QGLVSLRKLWLMHSRISVIERNAFDDLK 278

Query:    60 NLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWL----REMLVRRNTSA 114
             NL  LNL  N+  S    +     +L  + +  NP  C C++LWL    +E +   +T  
Sbjct:   279 NLEELNLSHNSLHSLPHDLFTPLQQLERVHLNHNPWVCNCDVLWLSWWLKETVPDNSTCC 338

Query:   115 VFCNSPAPLKYKSLISLSAED 135
               C++P   K + +  L   D
Sbjct:   339 ARCHAPPGTKGRYIGDLDQRD 359

GO:0051965 "positive regulation of synapse assembly" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	150
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
TIGR00864	2740	TIGR00864, PCC, polycystin cation channel protein	8e-05
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	0.001

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.5 bits (106), Expect = 3e-07
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 11 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN 69
          LK L+++  + LT +  GAF    NL+ L L+ N  L  I  +A  GLP+L  L+L  N
Sbjct: 2  LKSLDLSN-NRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 5e-05
 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENP 93
          NL++L L+ N +L +I + A  GLPNL  L+L  N  TS S    +  P LR++D++ N 
Sbjct: 1  NLKSLDLSNN-RLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 94 I 94
          +
Sbjct: 60 L 60

Length = 60

>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 84  LRTIDIAENPIECGCNIL----WLREMLVR-RNTSAVFCNSPAPLKYKSLISLSAEDLG 137
           L  ID++ NP EC C +     W  E  V+ R   A  C  P  L  + L+ +   D G
Sbjct: 21  LSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDSG 79

The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half for technical reasons. Length = 2740

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
            G + LK + +   S+LT +   AF +  +L ++T+  +  L  I E A     +L  + 
Sbjct: 31  SGCTSLKSITLP--SSLTSIGSYAFYNCSSLTSITIPSS--LTSIGEYAFSNCSSLTSIT 86

Query: 66  LKENAFTSFSESMLAWPELRTIDIAEN 92
           +  N  T+      +   L++I I  +
Sbjct: 87  IPSN-LTTIGSYAFSNCSLKSITIPSS 112

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
KOG4237|consensus	498		99.89
KOG4194|consensus	873		99.82
KOG4237|consensus	498		99.62
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	99.39
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.36
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.16
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.08
KOG4194|consensus	873		99.06
PLN03150	623	hypothetical protein; Provisional	99.03
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	98.97
KOG0472|consensus	565		98.96
KOG0617|consensus	264		98.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.9
PLN03150	623	hypothetical protein; Provisional	98.83
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.82
KOG0617|consensus	264		98.76
KOG0472|consensus	565		98.75
KOG0444|consensus	1255		98.73
KOG0618|consensus	1081		98.63
KOG0444|consensus	1255		98.62
KOG0618|consensus	1081		98.53
KOG1644|consensus	233		98.46
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.35
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.35
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.31
KOG1259|consensus	490		98.29
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.26
KOG1859|consensus	1096		98.22
KOG4579|consensus	177		98.14
KOG1259|consensus	490		98.13
KOG0532|consensus	722		98.09
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.09
KOG1644|consensus	233		98.09
KOG1859|consensus	1096		98.05
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.0
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.97
KOG4579|consensus	177		97.94
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.93
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.84
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.82
KOG0531|consensus	414		97.7
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.67
KOG0531|consensus	414		97.66
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.64
KOG0532|consensus	722		97.53
KOG4658|consensus	889		97.51
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.51
KOG4658|consensus	889		97.45
PF01463	25	LRRCT: Leucine rich repeat C-terminal domain; Inte	97.19
KOG2123|consensus	388		97.0
KOG3207|consensus	505		96.99
KOG3207|consensus	505		96.94
KOG2739|consensus	260		96.7
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.65
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.55
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.46
KOG3665|consensus	699		96.34
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.34
smart00370	26	LRR Leucine-rich repeats, outliers.	96.34
KOG2982|consensus	418		96.25
KOG3665|consensus	699		96.24
smart00370	26	LRR Leucine-rich repeats, outliers.	96.2
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.2
KOG2123|consensus	388		95.86
KOG2739|consensus	260		95.11
PRK15386	426	type III secretion protein GogB; Provisional	94.69
KOG1909|consensus	382		94.28
KOG1909|consensus	382		93.53
PRK15386	426	type III secretion protein GogB; Provisional	93.45
KOG0473|consensus	326		92.94
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	92.62
KOG2982|consensus	418		92.1
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	90.01
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	88.6
KOG3763|consensus	585		87.12
KOG3864|consensus	221		86.39
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.33
KOG3864|consensus	221		85.67

>KOG4237|consensus

Probab=99.89  E-value=1e-23  Score=151.86  Aligned_cols=138  Identities=25%  Similarity=0.488  Sum_probs=128.7

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC-CC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WP   82 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~-~~   82 (150)
                      .|.+|++|++|++++| .++.|.+++|.++..++.|.+..|+ +..+....|.++..|++|+|.+|+|+.+-+..|+ +.
T Consensus       269 cf~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~  346 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF  346 (498)
T ss_pred             HHhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence            4889999999999999 9999999999999999999999996 9999999999999999999999999988776665 78


Q ss_pred             CccEEEccCCCcccccChHHHHHHHhhcC-CCCeeeCCCccccCccccccccccCCCCCccc
Q psy16571         83 ELRTIDIAENPIECGCNILWLREMLVRRN-TSAVFCNSPAPLKYKSLISLSAEDLGSRVRAL  143 (150)
Q Consensus        83 ~L~~L~l~~N~~~c~c~~~~l~~~~~~~~-~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~~~  143 (150)
                      +|..|.+-+|||.|+|.+.|+.+|++.+. ..+..|..|..+++.++.++...++.|..+..
T Consensus       347 ~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee  408 (498)
T KOG4237|consen  347 SLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEE  408 (498)
T ss_pred             eeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccc
Confidence            99999999999999999999999999875 78899999999999999999999999986543

>KOG4194|consensus

Probab=99.82  E-value=4e-21  Score=144.62  Aligned_cols=136  Identities=30%  Similarity=0.480  Sum_probs=112.5

Q ss_pred             ccccCccccceeccCCCcCccccc---CcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVR---KGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML   79 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~---~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~   79 (150)
                      ++|.++++|++||+++| .+..+.   ..+|.++++|+.|.+.+|. +..|+..+|.++..|++|+|.+|.|.++....|
T Consensus       359 ~af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF  436 (873)
T KOG4194|consen  359 GAFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF  436 (873)
T ss_pred             hHHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCcceeeccccc
Confidence            46777778888888877 766543   3457778888888888884 888888888888888888888888888877666


Q ss_pred             CCCCccEEEccCCCcccccChHHHHHHHhhcC---CCCeeeCCCccccCccccccccccCCCCC
Q psy16571         80 AWPELRTIDIAENPIECGCNILWLREMLVRRN---TSAVFCNSPAPLKYKSLISLSAEDLGSRV  140 (150)
Q Consensus        80 ~~~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~---~~~~~C~~~~~l~~~~~~~~~~~~~~C~~  140 (150)
                      .--.|.+|.+..-.|-|||++.|+.+|+.++.   .....|+.|+.+.|+.+.+++..++-|..
T Consensus       437 e~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~i~svd~~~lvC~D  500 (873)
T KOG4194|consen  437 EPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQSIVSVDTANLVCDD  500 (873)
T ss_pred             ccchhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcccccceeEeechhhceecC
Confidence            64488888888888999999999999999885   56689999999999999999999999974

>KOG4237|consensus

Probab=99.62  E-value=2.2e-17  Score=119.51  Aligned_cols=137  Identities=29%  Similarity=0.469  Sum_probs=103.3

Q ss_pred             CCccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCC-CCCCCccchhhcCCC---------------------
Q psy16571          1 MEKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK-NPKLKIIEEDALVGL---------------------   58 (150)
Q Consensus         1 ~p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~-n~~l~~~~~~~~~~l---------------------   58 (150)
                      +|++|..+++|+.||+++| .|+.|.+++|.++.++..+-+-+ |+ |+.++.++|.++                     
T Consensus        83 P~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~Nk-I~~l~k~~F~gL~slqrLllNan~i~Cir~~al  160 (498)
T KOG4237|consen   83 PPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNK-ITDLPKGAFGGLSSLQRLLLNANHINCIRQDAL  160 (498)
T ss_pred             Chhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCc-hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHH
Confidence            4667778888888888887 78888777787777776665555 64 777777666543                     


Q ss_pred             ---CCCCeEecCCCCccccCcCcC-CCCCccEEEccCCCcccccChHHHHHHHhhcC--CCCeeeCCCccccCccccccc
Q psy16571         59 ---PNLYHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLS  132 (150)
Q Consensus        59 ---~~L~~l~l~~n~l~~lp~~~~-~~~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~--~~~~~C~~~~~l~~~~~~~~~  132 (150)
                         +++..|.+..|.+..++...+ .+..++.+.+..|++-|||++.|+.+......  ..-.+|..|..++.+++..++
T Consensus       161 ~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~  240 (498)
T KOG4237|consen  161 RDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQED  240 (498)
T ss_pred             HHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccc
Confidence               444455555666666655333 36678888999999999999999999998775  566899999999999999988


Q ss_pred             cccCCCC
Q psy16571        133 AEDLGSR  139 (150)
Q Consensus       133 ~~~~~C~  139 (150)
                      ...+.|.
T Consensus       241 a~kf~c~  247 (498)
T KOG4237|consen  241 ARKFLCS  247 (498)
T ss_pred             hhhhhhh
Confidence            8888776

>TIGR00864 PCC polycystin cation channel protein

Probab=99.39  E-value=3.1e-13  Score=115.77  Aligned_cols=78  Identities=24%  Similarity=0.492  Sum_probs=68.5

Q ss_pred             ecCCCCccccCcCcCC-CCCccEEEccCCCcccccChHHHHHHHhhcC-----CCCeeeCCCccccCccccccccccCCC
Q psy16571         65 NLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRRN-----TSAVFCNSPAPLKYKSLISLSAEDLGS  138 (150)
Q Consensus        65 ~l~~n~l~~lp~~~~~-~~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~-----~~~~~C~~~~~l~~~~~~~~~~~~~~C  138 (150)
                      +|++|+|+.||...+. +.+|+.|+|.+|||+|||++.||.+|++...     ...+.|..|..++|+++.++...++.|
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d~~C   80 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDSGC   80 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCcccCCC
Confidence            5788999988887665 7899999999999999999999999998764     456889999999999999999988889


Q ss_pred             CCcc
Q psy16571        139 RVRA  142 (150)
Q Consensus       139 ~~~~  142 (150)
                      ..+-
T Consensus        81 ~~~y   84 (2740)
T TIGR00864        81 DEEY   84 (2740)
T ss_pred             CCcc
Confidence            7654

Note: this model has been restricted to the amino half because for technical reasons.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.36  E-value=7e-13  Score=73.56  Aligned_cols=61  Identities=38%  Similarity=0.563  Sum_probs=51.9

Q ss_pred             cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCc
Q psy16571          9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAF   71 (150)
Q Consensus         9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l   71 (150)
                      ++|++|++++| .++.+++++|.++++|+.+++++|. +..+++.+|.++++|+.+++++|+|
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46788888888 8888888888888888888888886 8888888888888888888888865

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.20  E-value=2.1e-11  Score=67.54  Aligned_cols=60  Identities=38%  Similarity=0.600  Sum_probs=54.8

Q ss_pred             CCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-CCCCccEEEccCCCc
Q psy16571         34 LNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-AWPELRTIDIAENPI   94 (150)
Q Consensus        34 ~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~~~~L~~L~l~~N~~   94 (150)
                      ++|+.+++++|. ++.+++..|.++++|+.|++++|.++.++...+ .+++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            578999999996 999999999999999999999999999988654 599999999999975

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.16  E-value=5.6e-11  Score=79.13  Aligned_cols=90  Identities=28%  Similarity=0.431  Sum_probs=44.0

Q ss_pred             CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc--CcCCCCCc
Q psy16571          7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLAWPEL   84 (150)
Q Consensus         7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~--~~~~~~~L   84 (150)
                      .+.+|+.|++++| .++.++.  +..++.|+.|++++|. |+.+.......+++|+.|++++|+|..+..  .+..+++|
T Consensus        40 ~l~~L~~L~Ls~N-~I~~l~~--l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L  115 (175)
T PF14580_consen   40 TLDKLEVLDLSNN-QITKLEG--LPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKL  115 (175)
T ss_dssp             T-TT--EEE-TTS---S--TT------TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT-
T ss_pred             hhcCCCEEECCCC-CCccccC--ccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCc
Confidence            3567899999999 9999874  7889999999999996 998865433457899999999999987754  24458999


Q ss_pred             cEEEccCCCcccccCh
Q psy16571         85 RTIDIAENPIECGCNI  100 (150)
Q Consensus        85 ~~L~l~~N~~~c~c~~  100 (150)
                      +.|++.+||+.-....
T Consensus       116 ~~L~L~~NPv~~~~~Y  131 (175)
T PF14580_consen  116 RVLSLEGNPVCEKKNY  131 (175)
T ss_dssp             -EEE-TT-GGGGSTTH
T ss_pred             ceeeccCCcccchhhH
Confidence            9999999998655444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.08  E-value=1.8e-10  Score=94.70  Aligned_cols=96  Identities=19%  Similarity=0.272  Sum_probs=81.6

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLA   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~   80 (150)
                      |..|.++++|+.|++++| .+....+..+..+++|+.|++++|. ++...+..|..+++|+.|+|++|.+. .+|..+..
T Consensus       492 ~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  569 (968)
T PLN00113        492 PRKLGSLSELMQLKLSEN-KLSGEIPDELSSCKKLVSLDLSHNQ-LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN  569 (968)
T ss_pred             ChhhhhhhccCEEECcCC-cceeeCChHHcCccCCCEEECCCCc-ccccCChhHhCcccCCEEECCCCcccccCChhHhc
Confidence            456778888999999998 8887777788889999999999996 88877778888999999999999988 67888888


Q ss_pred             CCCccEEEccCCCcccccC
Q psy16571         81 WPELRTIDIAENPIECGCN   99 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c~c~   99 (150)
                      +.+|+.+++++|++.+...
T Consensus       570 l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        570 VESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             CcccCEEeccCCcceeeCC
Confidence            8899999999999887544

>KOG4194|consensus

Probab=99.06  E-value=2.6e-11  Score=92.50  Aligned_cols=74  Identities=26%  Similarity=0.313  Sum_probs=44.3

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCc
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM   78 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~   78 (150)
                      ++|-++.++++|+++.| ++..+..+.+.++++|+.|++++|. |..+..+.+...++|+.|+|++|+|+.++++-
T Consensus       263 G~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~l~~~s  336 (873)
T KOG4194|consen  263 GAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITRLDEGS  336 (873)
T ss_pred             cceeeecccceeecccc-hhhhhhcccccccchhhhhccchhh-hheeecchhhhcccceeEeccccccccCChhH
Confidence            45555566666666665 6666555555566666666666663 66666655555566666666666666665543

>PLN03150 hypothetical protein; Provisional

Probab=99.03  E-value=5.4e-10  Score=87.99  Aligned_cols=84  Identities=20%  Similarity=0.290  Sum_probs=45.3

Q ss_pred             cceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCCCCCccEEEc
Q psy16571         11 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLAWPELRTIDI   89 (150)
Q Consensus        11 L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~~~~L~~L~l   89 (150)
                      +..|++++| .+.+..+..+..+++|+.|++++|. +.+..+..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|
T Consensus       420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~-l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNS-IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCc-ccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            445555555 5554444445555555555555553 54433334455555555555555555 44555555555555555


Q ss_pred             cCCCccc
Q psy16571         90 AENPIEC   96 (150)
Q Consensus        90 ~~N~~~c   96 (150)
                      ++|.+.+
T Consensus       498 s~N~l~g  504 (623)
T PLN03150        498 NGNSLSG  504 (623)
T ss_pred             cCCcccc
Confidence            5555544

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=98.97  E-value=4.1e-10  Score=60.05  Aligned_cols=47  Identities=28%  Similarity=0.647  Sum_probs=40.6

Q ss_pred             CCcccccChHHHHHHHhhcC----CCCeeeCCCccccCccccccccccCCCC
Q psy16571         92 NPIECGCNILWLREMLVRRN----TSAVFCNSPAPLKYKSLISLSAEDLGSR  139 (150)
Q Consensus        92 N~~~c~c~~~~l~~~~~~~~----~~~~~C~~~~~l~~~~~~~~~~~~~~C~  139 (150)
                      |||.|||++.||+.|+....    ...+.|.+|..++ .++.++..+++.|.
T Consensus         1 NP~~CdC~l~~~~~w~~~~~~~~~~~~~~C~~P~~~~-~~l~~~~~~~~~C~   51 (51)
T smart00082        1 NPFICDCELRWLLRWLQANEHLQDPVSLRCASPSSLR-GPLLELLHSEFKCP   51 (51)
T ss_pred             CCccCcCCchHHHHHHHhCCccCCCCCCEeCCcHHHH-hHHHcCCHhhCCCc
Confidence            89999999999999998732    4579999999999 67899888888884

>KOG0472|consensus

Probab=98.96  E-value=1.1e-10  Score=85.66  Aligned_cols=89  Identities=21%  Similarity=0.357  Sum_probs=62.7

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE   83 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~   83 (150)
                      .+..+..|+.|+++.| ++..+|. ....+..++.+-.++| ++..+++..+.++.+|.+|+|.+|.+..+|+.+.++.+
T Consensus       453 e~~~lv~Lq~LnlS~N-rFr~lP~-~~y~lq~lEtllas~n-qi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgnmtn  529 (565)
T KOG0472|consen  453 EMGSLVRLQTLNLSFN-RFRMLPE-CLYELQTLETLLASNN-QIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTN  529 (565)
T ss_pred             hhhhhhhhheeccccc-ccccchH-HHhhHHHHHHHHhccc-cccccChHHhhhhhhcceeccCCCchhhCChhhccccc
Confidence            3344444444444444 4444433 2222333334444444 57888887778899999999999999999999999999


Q ss_pred             ccEEEccCCCcc
Q psy16571         84 LRTIDIAENPIE   95 (150)
Q Consensus        84 L~~L~l~~N~~~   95 (150)
                      +++|.+.||||.
T Consensus       530 L~hLeL~gNpfr  541 (565)
T KOG0472|consen  530 LRHLELDGNPFR  541 (565)
T ss_pred             eeEEEecCCccC
Confidence            999999999997

>KOG0617|consensus

Probab=98.95  E-value=3e-11  Score=79.55  Aligned_cols=83  Identities=28%  Similarity=0.448  Sum_probs=51.1

Q ss_pred             cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEE
Q psy16571          9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTID   88 (150)
Q Consensus         9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~   88 (150)
                      ..+..|.+++| .++.+++. +..+.+|+.+++.+| +++.++.. .+.++.|+.|+++-|++..+|.++..++.|+.|+
T Consensus        33 s~ITrLtLSHN-Kl~~vppn-ia~l~nlevln~~nn-qie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   33 SNITRLTLSHN-KLTVVPPN-IAELKNLEVLNLSNN-QIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhcccC-ceeecCCc-HHHhhhhhhhhcccc-hhhhcChh-hhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence            44455666666 66666664 345666666666666 36666654 3556666666666666666666666666666666


Q ss_pred             ccCCCcc
Q psy16571         89 IAENPIE   95 (150)
Q Consensus        89 l~~N~~~   95 (150)
                      +.-|.+.
T Consensus       109 ltynnl~  115 (264)
T KOG0617|consen  109 LTYNNLN  115 (264)
T ss_pred             ccccccc
Confidence            6555543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.90  E-value=2.2e-09  Score=88.29  Aligned_cols=88  Identities=23%  Similarity=0.238  Sum_probs=41.5

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLAWP   82 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~~~   82 (150)
                      .|.++.+|++|++++| .+....+..+..+++|+.|++++|. +....+..+..+++|+.|++++|.+. .+|..+..++
T Consensus       159 ~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  236 (968)
T PLN00113        159 DIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT  236 (968)
T ss_pred             HHhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCC-CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence            3445555555555555 4443333344555555555555553 44333333444444555555544444 3343344444


Q ss_pred             CccEEEccCCC
Q psy16571         83 ELRTIDIAENP   93 (150)
Q Consensus        83 ~L~~L~l~~N~   93 (150)
                      +|+.|++++|.
T Consensus       237 ~L~~L~L~~n~  247 (968)
T PLN00113        237 SLNHLDLVYNN  247 (968)
T ss_pred             CCCEEECcCce
Confidence            44444444443

>PLN03150 hypothetical protein; Provisional

Probab=98.83  E-value=7.5e-09  Score=81.62  Aligned_cols=95  Identities=19%  Similarity=0.286  Sum_probs=80.4

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLA   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~   80 (150)
                      |..+..+++|+.|++++| .+.+..+..+..+++|+.|++++|. +....+..+..+++|+.|+|++|.+. .+|..+..
T Consensus       435 p~~i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~-lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~  512 (623)
T PLN03150        435 PNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNS-FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG  512 (623)
T ss_pred             CHHHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCC-CCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence            456778999999999999 8886666678999999999999996 98777777899999999999999998 78876655


Q ss_pred             -CCCccEEEccCCCccccc
Q psy16571         81 -WPELRTIDIAENPIECGC   98 (150)
Q Consensus        81 -~~~L~~L~l~~N~~~c~c   98 (150)
                       ..++..+++.+|+..|.+
T Consensus       513 ~~~~~~~l~~~~N~~lc~~  531 (623)
T PLN03150        513 RLLHRASFNFTDNAGLCGI  531 (623)
T ss_pred             ccccCceEEecCCccccCC
Confidence             346678999999988853

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.82  E-value=1.7e-09  Score=72.03  Aligned_cols=93  Identities=27%  Similarity=0.403  Sum_probs=34.3

Q ss_pred             cCccccceeccCCCcCcccccCcccC-CCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-CCCC
Q psy16571          6 KGLSYLKRLEITGASNLTRVRKGAFA-DNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-AWPE   83 (150)
Q Consensus         6 ~~l~~L~~L~l~~n~~l~~i~~~~~~-~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~~~~   83 (150)
                      .+...+++|++++| .++.+..  +. .+.+|+.|++++|. |+.+..  +..++.|+.|++++|.|+++...+. .+++
T Consensus        16 ~n~~~~~~L~L~~n-~I~~Ie~--L~~~l~~L~~L~Ls~N~-I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~   89 (175)
T PF14580_consen   16 NNPVKLRELNLRGN-QISTIEN--LGATLDKLEVLDLSNNQ-ITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPN   89 (175)
T ss_dssp             ---------------------S----TT-TT--EEE-TTS---S--TT------TT--EEE--SS---S-CHHHHHH-TT
T ss_pred             cccccccccccccc-ccccccc--hhhhhcCCCEEECCCCC-CccccC--ccChhhhhhcccCCCCCCccccchHHhCCc
Confidence            34556899999999 9999874  44 57899999999996 998864  6789999999999999999876543 4889


Q ss_pred             ccEEEccCCCcccccChHHHH
Q psy16571         84 LRTIDIAENPIECGCNILWLR  104 (150)
Q Consensus        84 L~~L~l~~N~~~c~c~~~~l~  104 (150)
                      |+.|++++|.+.---++..+.
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~  110 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLS  110 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGG
T ss_pred             CCEEECcCCcCCChHHhHHHH
Confidence            999999999997655555444

>KOG0617|consensus

Probab=98.76  E-value=2.8e-10  Score=75.04  Aligned_cols=89  Identities=20%  Similarity=0.268  Sum_probs=44.3

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCc-cchhhcCCCCCCCeEecCCCCccccCcCcCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKI-IEEDALVGLPNLYHLNLKENAFTSFSESMLA   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~-~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~   80 (150)
                      |.+++.|++|+.|++.-| .+..+|. .|+.++.|+.+++.+|. +.. .-|+.|-.+..|+.|+|+.|.+.-+|..+.+
T Consensus        72 p~~issl~klr~lnvgmn-rl~~lpr-gfgs~p~levldltynn-l~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~  148 (264)
T KOG0617|consen   72 PTSISSLPKLRILNVGMN-RLNILPR-GFGSFPALEVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGK  148 (264)
T ss_pred             Chhhhhchhhhheecchh-hhhcCcc-ccCCCchhhhhhccccc-cccccCCcchhHHHHHHHHHhcCCCcccCChhhhh
Confidence            445556666666666665 6555554 35666666666666664 432 2222233334444444444444444444444


Q ss_pred             CCCccEEEccCCC
Q psy16571         81 WPELRTIDIAENP   93 (150)
Q Consensus        81 ~~~L~~L~l~~N~   93 (150)
                      +.+|+.|.+.+|.
T Consensus       149 lt~lqil~lrdnd  161 (264)
T KOG0617|consen  149 LTNLQILSLRDND  161 (264)
T ss_pred             hcceeEEeeccCc
Confidence            4444444444443

>KOG0472|consensus

Probab=98.75  E-value=6.2e-10  Score=81.77  Aligned_cols=102  Identities=23%  Similarity=0.274  Sum_probs=73.5

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE   83 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~   83 (150)
                      +|.+...|.+++...| .++-++......+.++..+|+..|+ ++.+|... --+.+|..||+++|.++.+|..+.++ .
T Consensus       223 ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~-clLrsL~rLDlSNN~is~Lp~sLgnl-h  298 (565)
T KOG0472|consen  223 EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEI-CLLRSLERLDLSNNDISSLPYSLGNL-H  298 (565)
T ss_pred             CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccccc-cccCchHH-HHhhhhhhhcccCCccccCCcccccc-e
Confidence            5666666666666666 6777776666677788888888885 87777654 34677888888888888888888887 8


Q ss_pred             ccEEEccCCCccc------ccChHHHHHHHhh
Q psy16571         84 LRTIDIAENPIEC------GCNILWLREMLVR  109 (150)
Q Consensus        84 L~~L~l~~N~~~c------~c~~~~l~~~~~~  109 (150)
                      |+.|.+.|||+.-      .|...-+..+++.
T Consensus       299 L~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs  330 (565)
T KOG0472|consen  299 LKFLALEGNPLRTIRREIISKGTQEVLKYLRS  330 (565)
T ss_pred             eeehhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence            8888889998742      2555555555554

>KOG0444|consensus

Probab=98.73  E-value=1.5e-09  Score=84.05  Aligned_cols=92  Identities=21%  Similarity=0.341  Sum_probs=73.4

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW   81 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~   81 (150)
                      |..+-.|.-|..||+++| .+..+|. .+....++-.|++++|. |..||...|.++..|-.|+|++|++..+|+.+-.+
T Consensus        96 P~diF~l~dLt~lDLShN-qL~EvP~-~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL  172 (1255)
T KOG0444|consen   96 PTDIFRLKDLTILDLSHN-QLREVPT-NLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRL  172 (1255)
T ss_pred             Cchhcccccceeeecchh-hhhhcch-hhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHH
Confidence            445556677788888888 8888775 35666778888888885 88888888888888888888888888888888888


Q ss_pred             CCccEEEccCCCccc
Q psy16571         82 PELRTIDIAENPIEC   96 (150)
Q Consensus        82 ~~L~~L~l~~N~~~c   96 (150)
                      ..|+.|.|++||+.=
T Consensus       173 ~~LqtL~Ls~NPL~h  187 (1255)
T KOG0444|consen  173 SMLQTLKLSNNPLNH  187 (1255)
T ss_pred             hhhhhhhcCCChhhH
Confidence            889999999998753

>KOG0618|consensus

Probab=98.63  E-value=2.9e-09  Score=84.81  Aligned_cols=87  Identities=26%  Similarity=0.382  Sum_probs=62.8

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhh---------------------cCCCCCCCe
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDA---------------------LVGLPNLYH   63 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~---------------------~~~l~~L~~   63 (150)
                      +.+...|+.|++++| .+..+|...+.++..|+.|++++|+ ++.++...                     +..++.|+.
T Consensus       379 l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~  456 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKV  456 (1081)
T ss_pred             hccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceE
Confidence            456678888888888 8888888888888888888888886 77666421                     234567777


Q ss_pred             EecCCCCccc--cCcCcCCCCCccEEEccCCCc
Q psy16571         64 LNLKENAFTS--FSESMLAWPELRTIDIAENPI   94 (150)
Q Consensus        64 l~l~~n~l~~--lp~~~~~~~~L~~L~l~~N~~   94 (150)
                      +|++.|.++.  +|. ....++|++|+++||.+
T Consensus       457 lDlS~N~L~~~~l~~-~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  457 LDLSCNNLSEVTLPE-ALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             Eecccchhhhhhhhh-hCCCcccceeeccCCcc
Confidence            7777777763  332 22347888888888885

>KOG0444|consensus

Probab=98.62  E-value=2.1e-09  Score=83.19  Aligned_cols=91  Identities=21%  Similarity=0.281  Sum_probs=67.9

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW   81 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~   81 (150)
                      |.++.+|.+|..+|++.| ++..+|. .+..+++|+.|++++|. |+.+... .....+|++|+++.|.++.+|..+..+
T Consensus       215 Ptsld~l~NL~dvDlS~N-~Lp~vPe-cly~l~~LrrLNLS~N~-iteL~~~-~~~W~~lEtLNlSrNQLt~LP~avcKL  290 (1255)
T KOG0444|consen  215 PTSLDDLHNLRDVDLSEN-NLPIVPE-CLYKLRNLRRLNLSGNK-ITELNMT-EGEWENLETLNLSRNQLTVLPDAVCKL  290 (1255)
T ss_pred             CCchhhhhhhhhcccccc-CCCcchH-HHhhhhhhheeccCcCc-eeeeecc-HHHHhhhhhhccccchhccchHHHhhh
Confidence            667788888888888888 8888876 45668888888888885 8776543 244567777888888887777777777


Q ss_pred             CCccEEEccCCCccc
Q psy16571         82 PELRTIDIAENPIEC   96 (150)
Q Consensus        82 ~~L~~L~l~~N~~~c   96 (150)
                      +.|+.|++.+|++.=
T Consensus       291 ~kL~kLy~n~NkL~F  305 (1255)
T KOG0444|consen  291 TKLTKLYANNNKLTF  305 (1255)
T ss_pred             HHHHHHHhccCcccc
Confidence            777777777666543

>KOG0618|consensus

Probab=98.53  E-value=3.8e-09  Score=84.20  Aligned_cols=92  Identities=22%  Similarity=0.234  Sum_probs=80.4

Q ss_pred             ccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEE
Q psy16571          8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTI   87 (150)
Q Consensus         8 l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L   87 (150)
                      ++.|+.|++.+| .++.-.-..+.++.+|+.|++++|+ +..++...+..+..|+.|+|++|+++.+|..+..+..|+.|
T Consensus       358 ~~~Lq~LylanN-~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL  435 (1081)
T KOG0618|consen  358 HAALQELYLANN-HLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTL  435 (1081)
T ss_pred             hHHHHHHHHhcC-cccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHH
Confidence            457888999999 8876555578899999999999996 99999999999999999999999999999988888888888


Q ss_pred             EccCCCcccccChH
Q psy16571         88 DIAENPIECGCNIL  101 (150)
Q Consensus        88 ~l~~N~~~c~c~~~  101 (150)
                      ...+|.+.|..++.
T Consensus       436 ~ahsN~l~~fPe~~  449 (1081)
T KOG0618|consen  436 RAHSNQLLSFPELA  449 (1081)
T ss_pred             hhcCCceeechhhh
Confidence            88888888876543

>KOG1644|consensus

Probab=98.46  E-value=3.2e-07  Score=61.91  Aligned_cols=82  Identities=27%  Similarity=0.453  Sum_probs=69.2

Q ss_pred             ccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc--CcCCCCCccEE
Q psy16571         10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLAWPELRTI   87 (150)
Q Consensus        10 ~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~--~~~~~~~L~~L   87 (150)
                      +...+|+++| .+..++.  |..++.|.+|.+.+|+ |+.|.+..-..+++|..|.|.+|.|..+..  .+..++.|+.|
T Consensus        43 ~~d~iDLtdN-dl~~l~~--lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDN-DLRKLDN--LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccceeccccc-chhhccc--CCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            4567899999 8888874  8899999999999997 999998766678899999999999988754  24458899999


Q ss_pred             EccCCCcc
Q psy16571         88 DIAENPIE   95 (150)
Q Consensus        88 ~l~~N~~~   95 (150)
                      .+-+||..
T Consensus       119 tll~Npv~  126 (233)
T KOG1644|consen  119 TLLGNPVE  126 (233)
T ss_pred             eecCCchh
Confidence            99999873

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.35  E-value=4.7e-07  Score=72.74  Aligned_cols=77  Identities=25%  Similarity=0.317  Sum_probs=54.9

Q ss_pred             ccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEEc
Q psy16571         10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI   89 (150)
Q Consensus        10 ~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~l   89 (150)
                      +|+.|++++| .++.++..    ..+|+.|++++|. ++.++..    ..+|+.|++++|.|+.+|..+..++++..|++
T Consensus       383 ~L~~LdLs~N-~Lt~LP~l----~s~L~~LdLS~N~-LssIP~l----~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        383 GLKELIVSGN-RLTSLPVL----PSELKELMVSGNR-LTSLPML----PSGLLSLSVYRNQLTRLPESLIHLSSETTVNL  452 (788)
T ss_pred             ccceEEecCC-cccCCCCc----ccCCCEEEccCCc-CCCCCcc----hhhhhhhhhccCcccccChHHhhccCCCeEEC
Confidence            4555666665 55555431    2456777777774 7666532    24577788888888888888888999999999


Q ss_pred             cCCCccc
Q psy16571         90 AENPIEC   96 (150)
Q Consensus        90 ~~N~~~c   96 (150)
                      ++|+++.
T Consensus       453 s~N~Ls~  459 (788)
T PRK15387        453 EGNPLSE  459 (788)
T ss_pred             CCCCCCc
Confidence            9999985

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.35  E-value=8.4e-07  Score=45.61  Aligned_cols=38  Identities=39%  Similarity=0.581  Sum_probs=17.4

Q ss_pred             CCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcccc
Q psy16571         35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF   74 (150)
Q Consensus        35 ~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~l   74 (150)
                      +|+.|++++|. ++.+++ .+..+++|+.|++++|+++.+
T Consensus         2 ~L~~L~l~~N~-i~~l~~-~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQ-ITDLPP-ELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS--SSHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCC-CcccCc-hHhCCCCCCEEEecCCCCCCC
Confidence            34455555553 554443 234455555555555555444

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.31  E-value=6.7e-07  Score=45.97  Aligned_cols=37  Identities=32%  Similarity=0.598  Sum_probs=32.6

Q ss_pred             CCCCeEecCCCCccccCcCcCCCCCccEEEccCCCcc
Q psy16571         59 PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE   95 (150)
Q Consensus        59 ~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~l~~N~~~   95 (150)
                      ++|+.|++++|+|+.+|..+..+++|+.|++++|++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            4789999999999999988899999999999999986

...

>KOG1259|consensus

Probab=98.29  E-value=2.2e-07  Score=66.49  Aligned_cols=82  Identities=26%  Similarity=0.423  Sum_probs=61.9

Q ss_pred             ccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEEc
Q psy16571         10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI   89 (150)
Q Consensus        10 ~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~l   89 (150)
                      .|.++|+++| .++.++. +..-+|.++.|++++|. +..+..  +..+++|+.|+|++|.++.+..+-..+.++..|.+
T Consensus       285 ~LtelDLS~N-~I~~iDE-SvKL~Pkir~L~lS~N~-i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  285 ELTELDLSGN-LITQIDE-SVKLAPKLRRLILSQNR-IRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhcccccc-chhhhhh-hhhhccceeEEeccccc-eeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            4677899998 8888875 45668889999999986 877765  56788889999999988877654444666677777


Q ss_pred             cCCCccc
Q psy16571         90 AENPIEC   96 (150)
Q Consensus        90 ~~N~~~c   96 (150)
                      ++|.+.-
T Consensus       360 a~N~iE~  366 (490)
T KOG1259|consen  360 AQNKIET  366 (490)
T ss_pred             hhhhHhh
Confidence            7776654

>PLN03210 Resistant to P

Probab=98.26  E-value=2.8e-06  Score=71.54  Aligned_cols=84  Identities=23%  Similarity=0.329  Sum_probs=51.0

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW   81 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~   81 (150)
                      |.+|.++++|+.|++++|..++.+|...  .+++|+.|++++|..+..++.    ...+|+.|+|++|.+..+|..+..+
T Consensus       795 P~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~Ls~n~i~~iP~si~~l  868 (1153)
T PLN03210        795 PSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPD----ISTNISDLNLSRTGIEEVPWWIEKF  868 (1153)
T ss_pred             ChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCccccccc----cccccCEeECCCCCCccChHHHhcC
Confidence            4456666677777777664566665432  456666666666543433322    1245667777777777777666666


Q ss_pred             CCccEEEccC
Q psy16571         82 PELRTIDIAE   91 (150)
Q Consensus        82 ~~L~~L~l~~   91 (150)
                      ++|+.|++.+
T Consensus       869 ~~L~~L~L~~  878 (1153)
T PLN03210        869 SNLSFLDMNG  878 (1153)
T ss_pred             CCCCEEECCC
Confidence            7777776665

syringae 6; Provisional

>KOG1859|consensus

Probab=98.22  E-value=9e-08  Score=75.25  Aligned_cols=85  Identities=26%  Similarity=0.373  Sum_probs=49.1

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE   83 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~   83 (150)
                      +++-++.|+.|++++| .++.+.  .+..++.|++||+++|. +..++.-...+. +|+.|.|++|.++++ .++-++.+
T Consensus       182 SLqll~ale~LnLshN-k~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~Lks  255 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHN-KFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKS  255 (1096)
T ss_pred             HHHHHHHhhhhccchh-hhhhhH--HHHhcccccccccccch-hccccccchhhh-hheeeeecccHHHhh-hhHHhhhh
Confidence            4445566777777777 777765  46677777888887775 766664332222 255666666655554 22333444


Q ss_pred             ccEEEccCCCc
Q psy16571         84 LRTIDIAENPI   94 (150)
Q Consensus        84 L~~L~l~~N~~   94 (150)
                      |..|+++.|-+
T Consensus       256 L~~LDlsyNll  266 (1096)
T KOG1859|consen  256 LYGLDLSYNLL  266 (1096)
T ss_pred             hhccchhHhhh
Confidence            44444444433

>KOG4579|consensus

Probab=98.14  E-value=1.1e-07  Score=60.52  Aligned_cols=86  Identities=21%  Similarity=0.391  Sum_probs=50.2

Q ss_pred             ceeccCCCcCcccccC--cccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEEc
Q psy16571         12 KRLEITGASNLTRVRK--GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI   89 (150)
Q Consensus        12 ~~L~l~~n~~l~~i~~--~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~l   89 (150)
                      ..++++.+ .+.+++.  ..+.....|..+++++|. +..+++..-...+.++.+++++|.|+.+|.++..++.|+.+++
T Consensus        30 h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   30 HFLDLSSC-QLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             hhcccccc-hhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence            34556655 5554442  122334445556677773 6666665333345666677777777777766666677777777


Q ss_pred             cCCCcccccC
Q psy16571         90 AENPIECGCN   99 (150)
Q Consensus        90 ~~N~~~c~c~   99 (150)
                      +.|++.-...
T Consensus       108 ~~N~l~~~p~  117 (177)
T KOG4579|consen  108 RFNPLNAEPR  117 (177)
T ss_pred             ccCccccchH
Confidence            7777665443

>KOG1259|consensus

Probab=98.13  E-value=5.8e-07  Score=64.42  Aligned_cols=91  Identities=25%  Similarity=0.306  Sum_probs=62.8

Q ss_pred             cCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhh---------------------cCCCCCCCeE
Q psy16571          6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDA---------------------LVGLPNLYHL   64 (150)
Q Consensus         6 ~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~---------------------~~~l~~L~~l   64 (150)
                      .-++.++.|++++| .+..+..  +..+++|..|++++|. ++.+....                     +..+-+|..|
T Consensus       304 KL~Pkir~L~lS~N-~i~~v~n--La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnL  379 (490)
T KOG1259|consen  304 KLAPKLRRLILSQN-RIRTVQN--LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNL  379 (490)
T ss_pred             hhccceeEEecccc-ceeeehh--hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheec
Confidence            33567788888888 8887765  6678888888888885 65544321                     1233456677


Q ss_pred             ecCCCCccccCc--CcCCCCCccEEEccCCCcccccCh
Q psy16571         65 NLKENAFTSFSE--SMLAWPELRTIDIAENPIECGCNI  100 (150)
Q Consensus        65 ~l~~n~l~~lp~--~~~~~~~L~~L~l~~N~~~c~c~~  100 (150)
                      ++++|+|..+..  .+++++.|..+.+.+||+.-.-+.
T Consensus       380 Dl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  380 DLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             cccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            777777776543  567788888888888888776554

>KOG0532|consensus

Probab=98.09  E-value=4e-07  Score=69.81  Aligned_cols=88  Identities=18%  Similarity=0.334  Sum_probs=59.8

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE   83 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~   83 (150)
                      .++.+..|..|+.+.| .+..+++ .+.++.+|+.+.+..|. +..+++.. ..+ .|..||++.|++..||..+.++..
T Consensus       161 ~ig~~~tl~~ld~s~n-ei~slps-ql~~l~slr~l~vrRn~-l~~lp~El-~~L-pLi~lDfScNkis~iPv~fr~m~~  235 (722)
T KOG0532|consen  161 EIGLLPTLAHLDVSKN-EIQSLPS-QLGYLTSLRDLNVRRNH-LEDLPEEL-CSL-PLIRLDFSCNKISYLPVDFRKMRH  235 (722)
T ss_pred             ccccchhHHHhhhhhh-hhhhchH-HhhhHHHHHHHHHhhhh-hhhCCHHH-hCC-ceeeeecccCceeecchhhhhhhh
Confidence            3344445555555555 5555554 34455555555555554 55555543 233 377899999999999999999999


Q ss_pred             ccEEEccCCCccc
Q psy16571         84 LRTIDIAENPIEC   96 (150)
Q Consensus        84 L~~L~l~~N~~~c   96 (150)
                      |++|.|.+||+.-
T Consensus       236 Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  236 LQVLQLENNPLQS  248 (722)
T ss_pred             heeeeeccCCCCC
Confidence            9999999999974

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.09  E-value=9.8e-06  Score=65.31  Aligned_cols=77  Identities=22%  Similarity=0.307  Sum_probs=43.8

Q ss_pred             ccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEEc
Q psy16571         10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI   89 (150)
Q Consensus        10 ~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~l   89 (150)
                      +|+.|++++| .++.++...   ..+|+.|++++|. +..++...   ..+|+.|++++|+++.+|..+.  .+|+.|++
T Consensus       221 nL~~L~Ls~N-~LtsLP~~l---~~~L~~L~Ls~N~-L~~LP~~l---~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~L  290 (754)
T PRK15370        221 NIKTLYANSN-QLTSIPATL---PDTIQEMELSINR-ITELPERL---PSALQSLDLFHNKISCLPENLP--EELRYLSV  290 (754)
T ss_pred             CCCEEECCCC-ccccCChhh---hccccEEECcCCc-cCcCChhH---hCCCCEEECcCCccCccccccC--CCCcEEEC
Confidence            3444444444 444443321   1245555555553 55554332   1357777777777777776554  47888888


Q ss_pred             cCCCccc
Q psy16571         90 AENPIEC   96 (150)
Q Consensus        90 ~~N~~~c   96 (150)
                      ++|.+..
T Consensus       291 s~N~Lt~  297 (754)
T PRK15370        291 YDNSIRT  297 (754)
T ss_pred             CCCcccc
Confidence            8887764

>KOG1644|consensus

Probab=98.09  E-value=5e-06  Score=56.25  Aligned_cols=88  Identities=26%  Similarity=0.342  Sum_probs=71.9

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccch-hhcCCCCCCCeEecCCCCccccCcC----
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFTSFSES----   77 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~-~~~~~l~~L~~l~l~~n~l~~lp~~----   77 (150)
                      +.|..+..|.+|.+++| +|+.|.+..-..+++|..|.+.+|+ |..+.. ..+..++.|+.|.+-+|.+..-...    
T Consensus        58 ~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yv  135 (233)
T KOG1644|consen   58 DNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYV  135 (233)
T ss_pred             ccCCCccccceEEecCC-cceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCCchhcccCceeEE
Confidence            35778899999999999 9999999887888999999999996 876543 3356789999999999998865542    


Q ss_pred             cCCCCCccEEEccCC
Q psy16571         78 MLAWPELRTIDIAEN   92 (150)
Q Consensus        78 ~~~~~~L~~L~l~~N   92 (150)
                      +..+++|+.|++.+-
T Consensus       136 l~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  136 LYKLPSLRTLDFQKV  150 (233)
T ss_pred             EEecCcceEeehhhh
Confidence            445889999998764

>KOG1859|consensus

Probab=98.05  E-value=1.4e-07  Score=74.30  Aligned_cols=88  Identities=26%  Similarity=0.405  Sum_probs=72.3

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC--cCCCC
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES--MLAWP   82 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~--~~~~~   82 (150)
                      +..++.|++|||++| .+..++.-...++. |..|.+++|. ++.+..  +.++.+|+.||++.|-|.....-  ++.+.
T Consensus       205 Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs  279 (1096)
T KOG1859|consen  205 LRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNA-LTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLS  279 (1096)
T ss_pred             HHhcccccccccccc-hhccccccchhhhh-heeeeecccH-HHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHH
Confidence            456889999999999 99999976555555 9999999996 888765  35789999999999998866442  33467


Q ss_pred             CccEEEccCCCcccc
Q psy16571         83 ELRTIDIAENPIECG   97 (150)
Q Consensus        83 ~L~~L~l~~N~~~c~   97 (150)
                      .|+.|.|.|||+-|.
T Consensus       280 ~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  280 SLIVLWLEGNPLCCA  294 (1096)
T ss_pred             HHHHHhhcCCccccC
Confidence            899999999999775

>PLN03210 Resistant to P

Probab=98.00  E-value=2.7e-05  Score=65.75  Aligned_cols=83  Identities=20%  Similarity=0.354  Sum_probs=42.2

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCC-CccccCcCcCCCCC
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN-AFTSFSESMLAWPE   83 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n-~l~~lp~~~~~~~~   83 (150)
                      +..+++|+.|+++++..+..++.  +..+++|+.|++++|..+..++. .+..+++|+.|+++++ .+..+|..+ ++++
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s  705 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILPTGI-NLKS  705 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence            34455556666655433444442  44455666666665533444433 3455566666666654 445555433 3444


Q ss_pred             ccEEEccC
Q psy16571         84 LRTIDIAE   91 (150)
Q Consensus        84 L~~L~l~~   91 (150)
                      |+.|++++
T Consensus       706 L~~L~Lsg  713 (1153)
T PLN03210        706 LYRLNLSG  713 (1153)
T ss_pred             CCEEeCCC
Confidence            44444444

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.97  E-value=1.8e-05  Score=63.87  Aligned_cols=78  Identities=23%  Similarity=0.342  Sum_probs=60.3

Q ss_pred             cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEE
Q psy16571          9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTID   88 (150)
Q Consensus         9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~   88 (150)
                      ..|+.|++++| .++.++...+   .+|+.|++++|. ++.++...   ..+|+.|+|++|.+..+|..+.  .+|+.|+
T Consensus       199 ~~L~~L~Ls~N-~LtsLP~~l~---~nL~~L~Ls~N~-LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~  268 (754)
T PRK15370        199 EQITTLILDNN-ELKSLPENLQ---GNIKTLYANSNQ-LTSIPATL---PDTIQEMELSINRITELPERLP--SALQSLD  268 (754)
T ss_pred             cCCcEEEecCC-CCCcCChhhc---cCCCEEECCCCc-cccCChhh---hccccEEECcCCccCcCChhHh--CCCCEEE
Confidence            35788888888 8888876543   478888999885 88876542   2468889999999988887664  4789999


Q ss_pred             ccCCCccc
Q psy16571         89 IAENPIEC   96 (150)
Q Consensus        89 l~~N~~~c   96 (150)
                      +++|.+..
T Consensus       269 Ls~N~L~~  276 (754)
T PRK15370        269 LFHNKISC  276 (754)
T ss_pred             CcCCccCc
Confidence            99998763

>KOG4579|consensus

Probab=97.94  E-value=8.3e-07  Score=56.68  Aligned_cols=85  Identities=21%  Similarity=0.264  Sum_probs=74.0

Q ss_pred             CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccE
Q psy16571          7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRT   86 (150)
Q Consensus         7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~   86 (150)
                      ....|..+++++| .+...++..-...+.+..+++++|. |..+|.. +..++.|+.++++.|.+...|..++.+.++..
T Consensus        51 ~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~  127 (177)
T KOG4579|consen   51 KGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNE-ISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM  127 (177)
T ss_pred             CCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhh-hhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence            3456777899999 9999988666667789999999996 9999987 78899999999999999999998888889999


Q ss_pred             EEccCCCc
Q psy16571         87 IDIAENPI   94 (150)
Q Consensus        87 L~l~~N~~   94 (150)
                      |+..+|..
T Consensus       128 Lds~~na~  135 (177)
T KOG4579|consen  128 LDSPENAR  135 (177)
T ss_pred             hcCCCCcc
Confidence            99988864

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.93  E-value=4.8e-05  Score=47.83  Aligned_cols=86  Identities=19%  Similarity=0.388  Sum_probs=59.2

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC-
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~-   80 (150)
                      ..+|.+..+|+.+.+..  .+..+...+|.++..|+.+.+..+  +..+...+|....+++.+.+.+ .+..++...+. 
T Consensus         5 ~~~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             TTTTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             HHHHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccc
Confidence            45788888999999984  688999999999989999999764  8888888898888899999975 67777777666 


Q ss_pred             CCCccEEEccCC
Q psy16571         81 WPELRTIDIAEN   92 (150)
Q Consensus        81 ~~~L~~L~l~~N   92 (150)
                      ++++..+.+..+
T Consensus        80 ~~~l~~i~~~~~   91 (129)
T PF13306_consen   80 CTNLKNIDIPSN   91 (129)
T ss_dssp             -TTECEEEETTT
T ss_pred             cccccccccCcc
Confidence            888888888654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.91  E-value=2.2e-06  Score=61.98  Aligned_cols=39  Identities=26%  Similarity=0.287  Sum_probs=17.6

Q ss_pred             cCccccceeccCCCcCcccccCcccCCCCC---CCEEeCCCCC
Q psy16571          6 KGLSYLKRLEITGASNLTRVRKGAFADNLN---LETLTLNKNP   45 (150)
Q Consensus         6 ~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~---L~~l~l~~n~   45 (150)
                      ..+++|+.|++++| .+....+..+..+..   |+.+++++|.
T Consensus        78 ~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~~~~L~~L~ls~~~  119 (319)
T cd00116          78 TKGCGLQELDLSDN-ALGPDGCGVLESLLRSSSLQELKLNNNG  119 (319)
T ss_pred             HhcCceeEEEccCC-CCChhHHHHHHHHhccCcccEEEeeCCc
Confidence            34445555555555 444222222222222   5555555553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.84  E-value=3.1e-05  Score=62.53  Aligned_cols=17  Identities=29%  Similarity=0.608  Sum_probs=8.7

Q ss_pred             CCCCeEecCCCCccccC
Q psy16571         59 PNLYHLNLKENAFTSFS   75 (150)
Q Consensus        59 ~~L~~l~l~~n~l~~lp   75 (150)
                      ++|+.|++++|.+..+|
T Consensus       302 ~~L~~LdLS~N~L~~Lp  318 (788)
T PRK15387        302 PGLQELSVSDNQLASLP  318 (788)
T ss_pred             cccceeECCCCccccCC
Confidence            34555555555555444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.82  E-value=1.3e-05  Score=58.03  Aligned_cols=85  Identities=22%  Similarity=0.327  Sum_probs=43.2

Q ss_pred             cccceeccCCCcCcccc----cCcccCCCCCCCEEeCCCCCCCCccc----hhhcCCCCCCCeEecCCCCccc-----cC
Q psy16571          9 SYLKRLEITGASNLTRV----RKGAFADNLNLETLTLNKNPKLKIIE----EDALVGLPNLYHLNLKENAFTS-----FS   75 (150)
Q Consensus         9 ~~L~~L~l~~n~~l~~i----~~~~~~~l~~L~~l~l~~n~~l~~~~----~~~~~~l~~L~~l~l~~n~l~~-----lp   75 (150)
                      .+|+.|++++| .++..    -...+..+..|+.+++++|. ++...    ...+...++|+.|++++|.+..     +.
T Consensus       137 ~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  214 (319)
T cd00116         137 PALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA  214 (319)
T ss_pred             CCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH
Confidence            45666666666 55411    11234445556666666664 54211    1123334566666666666542     22


Q ss_pred             cCcCCCCCccEEEccCCCcc
Q psy16571         76 ESMLAWPELRTIDIAENPIE   95 (150)
Q Consensus        76 ~~~~~~~~L~~L~l~~N~~~   95 (150)
                      ..+..+++|+.|++++|++.
T Consensus       215 ~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         215 ETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHhcccCCCCEEecCCCcCc
Confidence            22333566777777766654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0531|consensus

Probab=97.70  E-value=1.5e-05  Score=60.31  Aligned_cols=83  Identities=24%  Similarity=0.374  Sum_probs=41.0

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCc
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPEL   84 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L   84 (150)
                      +..+.+|..|++..| .+..+.. .+..+++|+.+++++|. |+.+.+  +..++.|+.|++.+|.|..+.. +..+..|
T Consensus        91 l~~~~~l~~l~l~~n-~i~~i~~-~l~~~~~L~~L~ls~N~-I~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L  164 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDN-KIEKIEN-LLSSLVNLQVLDLSFNK-ITKLEG--LSTLTLLKELNLSGNLISDISG-LESLKSL  164 (414)
T ss_pred             cccccceeeeecccc-chhhccc-chhhhhcchheeccccc-cccccc--hhhccchhhheeccCcchhccC-Cccchhh
Confidence            344455555556555 5555543 13445555666666553 555543  2334445555555555555432 2224444


Q ss_pred             cEEEccCCC
Q psy16571         85 RTIDIAENP   93 (150)
Q Consensus        85 ~~L~l~~N~   93 (150)
                      +.+++++|.
T Consensus       165 ~~l~l~~n~  173 (414)
T KOG0531|consen  165 KLLDLSYNR  173 (414)
T ss_pred             hcccCCcch
Confidence            444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.67  E-value=0.00015  Score=45.60  Aligned_cols=85  Identities=26%  Similarity=0.409  Sum_probs=60.2

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW   81 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~   81 (150)
                      ..+|.+..+|+.+.+..+  +..++..+|.....|+.+.+.+ . +..+....|.....++.+.+..+ +..++...+.-
T Consensus        28 ~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~  102 (129)
T PF13306_consen   28 ENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSN  102 (129)
T ss_dssp             TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT
T ss_pred             hhhccccccccccccccc--ccccceeeeecccccccccccc-c-ccccccccccccccccccccCcc-ccEEchhhhcC
Confidence            357888889999999864  8999999999998999999975 3 78888888988999999999876 77888777765


Q ss_pred             CCccEEEccC
Q psy16571         82 PELRTIDIAE   91 (150)
Q Consensus        82 ~~L~~L~l~~   91 (150)
                      ..++.+.+..
T Consensus       103 ~~l~~i~~~~  112 (129)
T PF13306_consen  103 CNLKEINIPS  112 (129)
T ss_dssp             -T--EEE-TT
T ss_pred             CCceEEEECC
Confidence            5888887764

>KOG0531|consensus

Probab=97.66  E-value=2.6e-05  Score=58.94  Aligned_cols=97  Identities=21%  Similarity=0.272  Sum_probs=76.1

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCCCC
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPE   83 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~~~   83 (150)
                      +..+.+|++|++++| .|+.+..  +..++.|+.|++++|. |+.+..  +..+..|+.+++++|.+..+... ...+..
T Consensus       114 l~~~~~L~~L~ls~N-~I~~i~~--l~~l~~L~~L~l~~N~-i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~  187 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFN-KITKLEG--LSTLTLLKELNLSGNL-ISDISG--LESLKSLKLLDLSYNRIVDIENDELSELIS  187 (414)
T ss_pred             hhhhhcchheecccc-ccccccc--hhhccchhhheeccCc-chhccC--CccchhhhcccCCcchhhhhhhhhhhhccc
Confidence            456788999999999 9998875  6677889999999996 888764  45588899999999999988663 355778


Q ss_pred             ccEEEccCCCcccccChHHHHHHH
Q psy16571         84 LRTIDIAENPIECGCNILWLREML  107 (150)
Q Consensus        84 L~~L~l~~N~~~c~c~~~~l~~~~  107 (150)
                      +..+.+.+|.+...-.+..+....
T Consensus       188 l~~l~l~~n~i~~i~~~~~~~~l~  211 (414)
T KOG0531|consen  188 LEELDLGGNSIREIEGLDLLKKLV  211 (414)
T ss_pred             hHHHhccCCchhcccchHHHHHHH
Confidence            888999999888776665444443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.64  E-value=3e-05  Score=58.08  Aligned_cols=79  Identities=23%  Similarity=0.359  Sum_probs=37.3

Q ss_pred             ccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEEc
Q psy16571         10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI   89 (150)
Q Consensus        10 ~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~l   89 (150)
                      +|+.|++++| .+..++. ....++.|+.|+++.|. +..++... ...+.|..+++++|.+..+|..+.....|..+.+
T Consensus       141 nL~~L~l~~N-~i~~l~~-~~~~l~~L~~L~l~~N~-l~~l~~~~-~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~  216 (394)
T COG4886         141 NLKELDLSDN-KIESLPS-PLRNLPNLKNLDLSFND-LSDLPKLL-SNLSNLNNLDLSGNKISDLPPEIELLSALEELDL  216 (394)
T ss_pred             hccccccccc-chhhhhh-hhhccccccccccCCch-hhhhhhhh-hhhhhhhheeccCCccccCchhhhhhhhhhhhhh
Confidence            4455555555 5444431 23444555555555553 54444421 1344555555555555555543323334555555


Q ss_pred             cCC
Q psy16571         90 AEN   92 (150)
Q Consensus        90 ~~N   92 (150)
                      ++|
T Consensus       217 ~~N  219 (394)
T COG4886         217 SNN  219 (394)
T ss_pred             cCC
Confidence            555

>KOG0532|consensus

Probab=97.53  E-value=4.4e-06  Score=64.28  Aligned_cols=103  Identities=22%  Similarity=0.290  Sum_probs=60.6

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW   81 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~   81 (150)
                      |.+..+|..|..|+++.| .+..++...+ .++ |+.+-+++|+ ++.++... +.++.|..++.+.|.+.++|..+..+
T Consensus       114 p~~i~~L~~lt~l~ls~N-qlS~lp~~lC-~lp-Lkvli~sNNk-l~~lp~~i-g~~~tl~~ld~s~nei~slpsql~~l  188 (722)
T KOG0532|consen  114 PEAICNLEALTFLDLSSN-QLSHLPDGLC-DLP-LKVLIVSNNK-LTSLPEEI-GLLPTLAHLDVSKNEIQSLPSQLGYL  188 (722)
T ss_pred             chhhhhhhHHHHhhhccc-hhhcCChhhh-cCc-ceeEEEecCc-cccCCccc-ccchhHHHhhhhhhhhhhchHHhhhH
Confidence            344556666677777777 6766665433 233 6666666665 66665542 34455555555555555555443322


Q ss_pred             ----------------------CCccEEEccCCCcc----cccChHHHHHHHhh
Q psy16571         82 ----------------------PELRTIDIAENPIE----CGCNILWLREMLVR  109 (150)
Q Consensus        82 ----------------------~~L~~L~l~~N~~~----c~c~~~~l~~~~~~  109 (150)
                                            -.|..|+++.|.+.    |.|.|..|+...-.
T Consensus       189 ~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~Le  242 (722)
T KOG0532|consen  189 TSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLE  242 (722)
T ss_pred             HHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeec
Confidence                                  24667888888763    77777776655443

>KOG4658|consensus

Probab=97.51  E-value=3.5e-05  Score=63.21  Aligned_cols=85  Identities=22%  Similarity=0.386  Sum_probs=44.3

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCCCCC
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLAWPE   83 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~~~~   83 (150)
                      |..++.|+.||+++|..+..+|. ..+.+-+|++|++++.. +..+|.. +..+..|.+|++..+.-. .+|.....+.+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~  643 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTG-ISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQS  643 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCC-ccccchH-HHHHHhhheeccccccccccccchhhhccc
Confidence            45555666666665544555543 34555666666666553 5555543 455555666666555332 23222222556


Q ss_pred             ccEEEccCC
Q psy16571         84 LRTIDIAEN   92 (150)
Q Consensus        84 L~~L~l~~N   92 (150)
                      |+.|.+..-
T Consensus       644 Lr~L~l~~s  652 (889)
T KOG4658|consen  644 LRVLRLPRS  652 (889)
T ss_pred             ccEEEeecc
Confidence            666655443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.51  E-value=3.8e-05  Score=57.50  Aligned_cols=87  Identities=25%  Similarity=0.350  Sum_probs=59.7

Q ss_pred             ccccceeccCCCcCcccccCcccCCCC-CCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccE
Q psy16571          8 LSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRT   86 (150)
Q Consensus         8 l~~L~~L~l~~n~~l~~i~~~~~~~l~-~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~   86 (150)
                      +..+..|++.+| .+..+++. ...+. +|+.+++++|. +..++.. ...++.|+.|++++|.+..+|......+.|..
T Consensus       115 ~~~l~~L~l~~n-~i~~i~~~-~~~~~~nL~~L~l~~N~-i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~  190 (394)
T COG4886         115 LTNLTSLDLDNN-NITDIPPL-IGLLKSNLKELDLSDNK-IESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN  190 (394)
T ss_pred             ccceeEEecCCc-ccccCccc-cccchhhcccccccccc-hhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence            355777777777 77777763 23332 78888888875 7776422 35677788888888888887776556677778


Q ss_pred             EEccCCCccccc
Q psy16571         87 IDIAENPIECGC   98 (150)
Q Consensus        87 L~l~~N~~~c~c   98 (150)
                      |++++|.+.---
T Consensus       191 L~ls~N~i~~l~  202 (394)
T COG4886         191 LDLSGNKISDLP  202 (394)
T ss_pred             eeccCCccccCc
Confidence            888887765443

>KOG4658|consensus

Probab=97.45  E-value=5.1e-05  Score=62.28  Aligned_cols=84  Identities=17%  Similarity=0.207  Sum_probs=72.2

Q ss_pred             cccceeccCCCcC--cccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccE
Q psy16571          9 SYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRT   86 (150)
Q Consensus         9 ~~L~~L~l~~n~~--l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~   86 (150)
                      +.|..|-+.+| .  +..++...|..++.|..||+++|..+..+|.. .+.+-+|+.|++++..+..+|.++.++..|.+
T Consensus       545 ~~L~tLll~~n-~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  545 PKLRTLLLQRN-SDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLPSGLGNLKKLIY  622 (889)
T ss_pred             CccceEEEeec-chhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence            36888888888 5  77888778999999999999998767777664 57899999999999999999999999999999


Q ss_pred             EEccCCCc
Q psy16571         87 IDIAENPI   94 (150)
Q Consensus        87 L~l~~N~~   94 (150)
                      |++..+.-
T Consensus       623 Lnl~~~~~  630 (889)
T KOG4658|consen  623 LNLEVTGR  630 (889)
T ss_pred             eccccccc
Confidence            99987653

>PF01463 LRRCT: Leucine rich repeat C-terminal domain; InterPro: IPR000483 Leucine-rich repeats (LRR, see IPR001611 from INTERPRO) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.19  E-value=0.00017  Score=32.25  Aligned_cols=25  Identities=28%  Similarity=0.510  Sum_probs=18.7

Q ss_pred             CeeeCCCccccCccccccccccCCCC
Q psy16571        114 AVFCNSPAPLKYKSLISLSAEDLGSR  139 (150)
Q Consensus       114 ~~~C~~~~~l~~~~~~~~~~~~~~C~  139 (150)
                      +++|++|..++| ++.++...++.|.
T Consensus         1 ~~~Ca~P~~lrg-~l~~~~~~~f~C~   25 (25)
T PF01463_consen    1 NARCASPPELRG-PLLDLPPSDFKCS   25 (25)
T ss_dssp             T-BEEESGGGTT-BGGGSSGGG----
T ss_pred             CCccCCChHHcC-cHhhCCcccCcCC
Confidence            368999999999 9999999999884

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions []. Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain (IPR000372 from INTERPRO) and a C-terminal LRR domain. This entry represents the C-terminal LRR domain. ; PDB: 3RFE_B 3REZ_D 2WFH_A 2V70_B 2V9S_C 2V9T_B 1W8A_A.

>KOG2123|consensus

Probab=97.00  E-value=1.9e-05  Score=56.22  Aligned_cols=82  Identities=29%  Similarity=0.395  Sum_probs=67.6

Q ss_pred             CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc--CcCCCCCc
Q psy16571          7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLAWPEL   84 (150)
Q Consensus         7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~--~~~~~~~L   84 (150)
                      .|.++++|++-++ .+..|.  ....++.|+.|.|+-|+ |+.+.+  |..+++|+.|+|..|.|..+.+  .+.++++|
T Consensus        17 dl~~vkKLNcwg~-~L~DIs--ic~kMp~lEVLsLSvNk-IssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsL   90 (388)
T KOG2123|consen   17 DLENVKKLNCWGC-GLDDIS--ICEKMPLLEVLSLSVNK-ISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSL   90 (388)
T ss_pred             HHHHhhhhcccCC-CccHHH--HHHhcccceeEEeeccc-cccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence            3567788888888 888875  46779999999999996 988876  5678999999999999988765  35568999


Q ss_pred             cEEEccCCCc
Q psy16571         85 RTIDIAENPI   94 (150)
Q Consensus        85 ~~L~l~~N~~   94 (150)
                      +.|-|..||.
T Consensus        91 r~LWL~ENPC  100 (388)
T KOG2123|consen   91 RTLWLDENPC  100 (388)
T ss_pred             hhHhhccCCc
Confidence            9999999984

>KOG3207|consensus

Probab=96.99  E-value=0.00032  Score=52.73  Aligned_cols=85  Identities=24%  Similarity=0.350  Sum_probs=41.6

Q ss_pred             ccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccch-hhcCCCCCCCeEecCCCCcccc--CcC-----cC
Q psy16571          8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFTSF--SES-----ML   79 (150)
Q Consensus         8 l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~-~~~~~l~~L~~l~l~~n~l~~l--p~~-----~~   79 (150)
                      .++|+.|++.+| ..-.+......-+..|+.|+|++|. +-..+. .....++.|..|+++.+++.++  |+.     .-
T Consensus       221 fPsl~~L~L~~N-~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~  298 (505)
T KOG3207|consen  221 FPSLEVLYLEAN-EIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH  298 (505)
T ss_pred             CCcHHHhhhhcc-cccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence            345555555555 3333332333344556666666664 433331 1223455556666666665532  221     11


Q ss_pred             CCCCccEEEccCCCc
Q psy16571         80 AWPELRTIDIAENPI   94 (150)
Q Consensus        80 ~~~~L~~L~l~~N~~   94 (150)
                      .+++|+.|.+..|++
T Consensus       299 ~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  299 TFPKLEYLNISENNI  313 (505)
T ss_pred             ccccceeeecccCcc
Confidence            255666666666665

>KOG3207|consensus

Probab=96.94  E-value=0.0004  Score=52.23  Aligned_cols=91  Identities=22%  Similarity=0.299  Sum_probs=63.3

Q ss_pred             ccCccccceeccCCCcCcccccC-cccCCCCCCCEEeCCCCCCCCccchhhc------CCCCCCCeEecCCCCccccCc-
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRK-GAFADNLNLETLTLNKNPKLKIIEEDAL------VGLPNLYHLNLKENAFTSFSE-   76 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~-~~~~~l~~L~~l~l~~n~~l~~~~~~~~------~~l~~L~~l~l~~n~l~~lp~-   76 (150)
                      +.-+..|++|+|++| .+-..+. .....++.|..+.++.+. +..+....-      ...++|+.|++..|++..++. 
T Consensus       242 ~~i~~~L~~LdLs~N-~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl  319 (505)
T KOG3207|consen  242 TKILQTLQELDLSNN-NLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL  319 (505)
T ss_pred             hhhhhHHhhccccCC-cccccccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCcccccccc
Confidence            344678899999999 6655542 345668888888998885 776553211      346899999999999976654 


Q ss_pred             -CcCCCCCccEEEccCCCcccc
Q psy16571         77 -SMLAWPELRTIDIAENPIECG   97 (150)
Q Consensus        77 -~~~~~~~L~~L~l~~N~~~c~   97 (150)
                       .+..+++++.+.+..|+++-.
T Consensus       320 ~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  320 NHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             chhhccchhhhhhccccccccc
Confidence             344466777777666666543

>KOG2739|consensus

Probab=96.70  E-value=0.0017  Score=45.72  Aligned_cols=84  Identities=25%  Similarity=0.307  Sum_probs=53.8

Q ss_pred             CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCC--CCCCccchhhcCCCCCCCeEecCCCCccccCc--CcCCCC
Q psy16571          7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN--PKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLAWP   82 (150)
Q Consensus         7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n--~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~--~~~~~~   82 (150)
                      .+..|+.+.+.+. .++.+.  .|..+++|+.|.++.|  +....++.-+ ...++|+++++++|+++.+..  .+..+.
T Consensus        41 ~~~~le~ls~~n~-gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   41 EFVELELLSVINV-GLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             cccchhhhhhhcc-ceeecc--cCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhc
Confidence            3445666666666 666665  3777889999999988  4122333332 344899999999998875322  233466


Q ss_pred             CccEEEccCCCc
Q psy16571         83 ELRTIDIAENPI   94 (150)
Q Consensus        83 ~L~~L~l~~N~~   94 (150)
                      +|..|++..+.-
T Consensus       117 nL~~Ldl~n~~~  128 (260)
T KOG2739|consen  117 NLKSLDLFNCSV  128 (260)
T ss_pred             chhhhhcccCCc
Confidence            777777766543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.65  E-value=0.00096  Score=28.73  Aligned_cols=17  Identities=35%  Similarity=0.657  Sum_probs=10.3

Q ss_pred             cceeccCCCcCcccccCc
Q psy16571         11 LKRLEITGASNLTRVRKG   28 (150)
Q Consensus        11 L~~L~l~~n~~l~~i~~~   28 (150)
                      |++|++++| .++.+|+.
T Consensus         2 L~~Ldls~n-~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGN-NLTSIPSS   18 (22)
T ss_dssp             ESEEEETSS-EESEEGTT
T ss_pred             ccEEECCCC-cCEeCChh
Confidence            566666666 66665554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.55  E-value=0.0013  Score=28.32  Aligned_cols=17  Identities=41%  Similarity=0.444  Sum_probs=9.9

Q ss_pred             CCeEecCCCCccccCcC
Q psy16571         61 LYHLNLKENAFTSFSES   77 (150)
Q Consensus        61 L~~l~l~~n~l~~lp~~   77 (150)
                      |+.|+|++|.++.+|..
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            45566666666655554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.46  E-value=0.0019  Score=25.98  Aligned_cols=16  Identities=44%  Similarity=0.609  Sum_probs=6.8

Q ss_pred             CCCeEecCCCCccccC
Q psy16571         60 NLYHLNLKENAFTSFS   75 (150)
Q Consensus        60 ~L~~l~l~~n~l~~lp   75 (150)
                      +|+.|++++|+++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555666666555544

...

>KOG3665|consensus

Probab=96.34  E-value=0.0019  Score=52.03  Aligned_cols=87  Identities=22%  Similarity=0.337  Sum_probs=43.5

Q ss_pred             ccccceeccCCCcCccccc-CcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccC--cCcCCCCCc
Q psy16571          8 LSYLKRLEITGASNLTRVR-KGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS--ESMLAWPEL   84 (150)
Q Consensus         8 l~~L~~L~l~~n~~l~~i~-~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp--~~~~~~~~L   84 (150)
                      |+.|+.|.+++- .+..-. ...+.++++|..||+++.. ++.+.  ..+.+++|+.|.+.+=.+....  ..+|++.+|
T Consensus       147 LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~--GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L  222 (699)
T KOG3665|consen  147 LPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTN-ISNLS--GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL  222 (699)
T ss_pred             CcccceEEecCc-eecchhHHHHhhccCccceeecCCCC-ccCcH--HHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence            466666666664 332221 1234456666666776664 65552  2345555555555433333221  134555566


Q ss_pred             cEEEccCCCccccc
Q psy16571         85 RTIDIAENPIECGC   98 (150)
Q Consensus        85 ~~L~l~~N~~~c~c   98 (150)
                      +.||++.....-++
T Consensus       223 ~vLDIS~~~~~~~~  236 (699)
T KOG3665|consen  223 RVLDISRDKNNDDT  236 (699)
T ss_pred             Ceeeccccccccch
Confidence            66666554444333

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.34  E-value=0.0029  Score=28.28  Aligned_cols=21  Identities=33%  Similarity=0.605  Sum_probs=10.8

Q ss_pred             CCCCeEecCCCCccccCcCcC
Q psy16571         59 PNLYHLNLKENAFTSFSESML   79 (150)
Q Consensus        59 ~~L~~l~l~~n~l~~lp~~~~   79 (150)
                      ++|+.|+|++|.|..+|..++
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555554443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.34  E-value=0.0029  Score=28.28  Aligned_cols=21  Identities=33%  Similarity=0.605  Sum_probs=10.8

Q ss_pred             CCCCeEecCCCCccccCcCcC
Q psy16571         59 PNLYHLNLKENAFTSFSESML   79 (150)
Q Consensus        59 ~~L~~l~l~~n~l~~lp~~~~   79 (150)
                      ++|+.|+|++|.|..+|..++
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555554443

>KOG2982|consensus

Probab=96.25  E-value=0.0014  Score=47.35  Aligned_cols=82  Identities=22%  Similarity=0.289  Sum_probs=49.4

Q ss_pred             cccceeccCCCcCcccccC--cccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc--ccCcCcCCCCCc
Q psy16571          9 SYLKRLEITGASNLTRVRK--GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT--SFSESMLAWPEL   84 (150)
Q Consensus         9 ~~L~~L~l~~n~~l~~i~~--~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~--~lp~~~~~~~~L   84 (150)
                      ..++++|+.+| .+.....  ..+..+|.|+.|+++.|. +.......-....+|+.+-|.+..+.  ......-.++.+
T Consensus        71 ~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   71 TDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            34566777777 6654321  345667777778887775 65543321124566777777666554  222233447778


Q ss_pred             cEEEccCC
Q psy16571         85 RTIDIAEN   92 (150)
Q Consensus        85 ~~L~l~~N   92 (150)
                      ++|.++.|
T Consensus       149 telHmS~N  156 (418)
T KOG2982|consen  149 TELHMSDN  156 (418)
T ss_pred             hhhhhccc
Confidence            88888888

>KOG3665|consensus

Probab=96.24  E-value=0.0027  Score=51.23  Aligned_cols=85  Identities=21%  Similarity=0.343  Sum_probs=44.6

Q ss_pred             cCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccc-hhhcCCCCCCCeEecCCCCccccCcC-------
Q psy16571          6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIE-EDALVGLPNLYHLNLKENAFTSFSES-------   77 (150)
Q Consensus         6 ~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~-~~~~~~l~~L~~l~l~~n~l~~lp~~-------   77 (150)
                      .++++|..||+++. +++.+  ...+.+.+|+.|.+.+=. +..-. -..+-.+++|+.||+|......-+..       
T Consensus       170 ~sFpNL~sLDIS~T-nI~nl--~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec  245 (699)
T KOG3665|consen  170 ASFPNLRSLDISGT-NISNL--SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC  245 (699)
T ss_pred             hccCccceeecCCC-CccCc--HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHh
Confidence            45566667777776 66665  235556666666665432 33211 11223466777777765544332210       


Q ss_pred             cCCCCCccEEEccCCCc
Q psy16571         78 MLAWPELRTIDIAENPI   94 (150)
Q Consensus        78 ~~~~~~L~~L~l~~N~~   94 (150)
                      -..+++|+.|+.+++.+
T Consensus       246 ~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  246 GMVLPELRFLDCSGTDI  262 (699)
T ss_pred             cccCccccEEecCCcch
Confidence            01156666666665544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.20  E-value=0.003  Score=28.24  Aligned_cols=21  Identities=33%  Similarity=0.441  Sum_probs=11.3

Q ss_pred             CCCCEEeCCCCCCCCccchhhc
Q psy16571         34 LNLETLTLNKNPKLKIIEEDAL   55 (150)
Q Consensus        34 ~~L~~l~l~~n~~l~~~~~~~~   55 (150)
                      ++|+.|++++|. ++.+++..|
T Consensus         2 ~~L~~L~L~~N~-l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQ-LSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCc-CCcCCHHHc
Confidence            345555555553 555555544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.20  E-value=0.003  Score=28.24  Aligned_cols=21  Identities=33%  Similarity=0.441  Sum_probs=11.3

Q ss_pred             CCCCEEeCCCCCCCCccchhhc
Q psy16571         34 LNLETLTLNKNPKLKIIEEDAL   55 (150)
Q Consensus        34 ~~L~~l~l~~n~~l~~~~~~~~   55 (150)
                      ++|+.|++++|. ++.+++..|
T Consensus         2 ~~L~~L~L~~N~-l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQ-LSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCc-CCcCCHHHc
Confidence            345555555553 555555544

>KOG2123|consensus

Probab=95.86  E-value=0.00037  Score=49.80  Aligned_cols=63  Identities=25%  Similarity=0.378  Sum_probs=54.8

Q ss_pred             cCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccch-hhcCCCCCCCeEecCCCCcc
Q psy16571          6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFT   72 (150)
Q Consensus         6 ~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~-~~~~~l~~L~~l~l~~n~l~   72 (150)
                      ..|+.|+.|.|+=| .++.+.+  |..+++|+.|+|..|. |..+.. ..+.++++|+.|.|..|.-.
T Consensus        38 ~kMp~lEVLsLSvN-kIssL~p--l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVN-KISSLAP--LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             HhcccceeEEeecc-ccccchh--HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcc
Confidence            46788999999999 9999976  7889999999999996 988875 45688999999999999765

>KOG2739|consensus

Probab=95.11  E-value=0.015  Score=40.98  Aligned_cols=66  Identities=21%  Similarity=0.294  Sum_probs=48.2

Q ss_pred             ccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCC--Ccc-ccCcCcCCCCCccEEEccCCCcccc
Q psy16571         29 AFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN--AFT-SFSESMLAWPELRTIDIAENPIECG   97 (150)
Q Consensus        29 ~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n--~l~-~lp~~~~~~~~L~~L~l~~N~~~c~   97 (150)
                      .+..+..|+.+.+.+.. ++.+.  .|..+++|+.|.++.|  ++. .++.-+-.+++|+++.+++|.++--
T Consensus        38 l~d~~~~le~ls~~n~g-ltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l  106 (260)
T KOG2739|consen   38 LTDEFVELELLSVINVG-LTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL  106 (260)
T ss_pred             ccccccchhhhhhhccc-eeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc
Confidence            34455667777776653 65554  3567899999999999  555 5655555579999999999998753

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.69  E-value=0.077  Score=40.35  Aligned_cols=63  Identities=16%  Similarity=0.207  Sum_probs=43.6

Q ss_pred             CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCC-CccccCcC
Q psy16571          7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN-AFTSFSES   77 (150)
Q Consensus         7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n-~l~~lp~~   77 (150)
                      .+.++..|++++| .++.+|.  +  ..+|+.|.++++..+..++.. +  ..+|+.|.+++| .+..+|..
T Consensus        50 ~~~~l~~L~Is~c-~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s  113 (426)
T PRK15386         50 EARASGRLYIKDC-DIESLPV--L--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES  113 (426)
T ss_pred             HhcCCCEEEeCCC-CCcccCC--C--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc
Confidence            3567889999998 8888872  2  246899999875446655532 2  357788888877 66666654

>KOG1909|consensus

Probab=94.28  E-value=0.015  Score=42.77  Aligned_cols=15  Identities=27%  Similarity=0.636  Sum_probs=7.8

Q ss_pred             CCCccEEEccCCCcc
Q psy16571         81 WPELRTIDIAENPIE   95 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~   95 (150)
                      +++|+.|+|.+|-|.
T Consensus       212 ~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  212 CPHLEVLDLRDNTFT  226 (382)
T ss_pred             CCcceeeecccchhh
Confidence            455555555555443

>KOG1909|consensus

Probab=93.53  E-value=0.039  Score=40.69  Aligned_cols=83  Identities=25%  Similarity=0.403  Sum_probs=44.2

Q ss_pred             cccceeccCCCcCccccc----CcccCCCCCCCEEeCCCCCCCCcc----chhhcCCCCCCCeEecCCCCccccC-----
Q psy16571          9 SYLKRLEITGASNLTRVR----KGAFADNLNLETLTLNKNPKLKII----EEDALVGLPNLYHLNLKENAFTSFS-----   75 (150)
Q Consensus         9 ~~L~~L~l~~n~~l~~i~----~~~~~~l~~L~~l~l~~n~~l~~~----~~~~~~~l~~L~~l~l~~n~l~~lp-----   75 (150)
                      +.|+.+...+| ++..-+    ...|...+.|+.+.++.|. |..-    ...+|..+++|+.|+|..|-++.--     
T Consensus       157 ~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  157 PKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             cceEEEEeecc-ccccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            45666666666 554332    1234555666777766664 5331    1234556677777777777665321     


Q ss_pred             cCcCCCCCccEEEccCCC
Q psy16571         76 ESMLAWPELRTIDIAENP   93 (150)
Q Consensus        76 ~~~~~~~~L~~L~l~~N~   93 (150)
                      ..+..+++|+++++++..
T Consensus       235 kaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCL  252 (382)
T ss_pred             HHhcccchheeecccccc
Confidence            122235566666654433

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.45  E-value=0.14  Score=39.04  Aligned_cols=58  Identities=24%  Similarity=0.363  Sum_probs=35.9

Q ss_pred             ccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCC---ccccCcC
Q psy16571         10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENA---FTSFSES   77 (150)
Q Consensus        10 ~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~---l~~lp~~   77 (150)
                      +|+.|.++++..++.++. .+  ..+|+.|.+++|..+..++.       +|+.|++.++.   +..+|..
T Consensus        73 sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~Cs~L~sLP~-------sLe~L~L~~n~~~~L~~LPss  133 (426)
T PRK15386         73 ELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHCPEISGLPE-------SVRSLEIKGSATDSIKNVPNG  133 (426)
T ss_pred             CCcEEEccCCCCcccCCc-hh--hhhhhheEccCccccccccc-------ccceEEeCCCCCcccccCcch
Confidence            588899988657766664 23  25788999988743655443       35555565554   3445543

>KOG0473|consensus

Probab=92.94  E-value=0.0014  Score=45.88  Aligned_cols=84  Identities=17%  Similarity=0.189  Sum_probs=67.7

Q ss_pred             ccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEE
Q psy16571          8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTI   87 (150)
Q Consensus         8 l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L   87 (150)
                      ......||++.| .+..+.. .|.-++.|..++++.|. +...+.+ +.....+..+++..|.....|.+....+.++.+
T Consensus        41 ~kr~tvld~~s~-r~vn~~~-n~s~~t~~~rl~~sknq-~~~~~~d-~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   41 FKRVTVLDLSSN-RLVNLGK-NFSILTRLVRLDLSKNQ-IKFLPKD-AKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN  116 (326)
T ss_pred             cceeeeehhhhh-HHHhhcc-chHHHHHHHHHhccHhh-HhhChhh-HHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence            345667888888 7777765 46778888889999884 8887765 466777888899999999999988889999999


Q ss_pred             EccCCCcc
Q psy16571         88 DIAENPIE   95 (150)
Q Consensus        88 ~l~~N~~~   95 (150)
                      ++.+|+|.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            99999864

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=92.62  E-value=0.082  Score=23.67  Aligned_cols=18  Identities=44%  Similarity=0.698  Sum_probs=14.1

Q ss_pred             CCCCeEecCCCCccccCc
Q psy16571         59 PNLYHLNLKENAFTSFSE   76 (150)
Q Consensus        59 ~~L~~l~l~~n~l~~lp~   76 (150)
                      ++|+.|++++|+++++|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            457788888888888876

>KOG2982|consensus

Probab=92.10  E-value=0.12  Score=37.76  Aligned_cols=83  Identities=24%  Similarity=0.267  Sum_probs=54.7

Q ss_pred             eeccCCCcCcccccC-ccc-CCCCCCCEEeCCCCCCCCccch--hhcCCCCCCCeEecCCCCccccCcCc-CCCCCccEE
Q psy16571         13 RLEITGASNLTRVRK-GAF-ADNLNLETLTLNKNPKLKIIEE--DALVGLPNLYHLNLKENAFTSFSESM-LAWPELRTI   87 (150)
Q Consensus        13 ~L~l~~n~~l~~i~~-~~~-~~l~~L~~l~l~~n~~l~~~~~--~~~~~l~~L~~l~l~~n~l~~lp~~~-~~~~~L~~L   87 (150)
                      .+.+.++ .+..... ..| ...+.++.+++.+|. |+....  ..+.++|+|++|+|+.|.+..--... ....+|+.|
T Consensus        49 llvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   49 LLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hheecCC-CCCcchhHHHHHHHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            3444454 5554432 112 235678899999995 875432  44678999999999999987433333 456788999


Q ss_pred             EccCCC--cccc
Q psy16571         88 DIAENP--IECG   97 (150)
Q Consensus        88 ~l~~N~--~~c~   97 (150)
                      -+.|..  |.|.
T Consensus       127 VLNgT~L~w~~~  138 (418)
T KOG2982|consen  127 VLNGTGLSWTQS  138 (418)
T ss_pred             EEcCCCCChhhh
Confidence            888765  4554

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=90.01  E-value=0.34  Score=21.67  Aligned_cols=16  Identities=31%  Similarity=0.484  Sum_probs=9.0

Q ss_pred             CCCCeEecCCCCcccc
Q psy16571         59 PNLYHLNLKENAFTSF   74 (150)
Q Consensus        59 ~~L~~l~l~~n~l~~l   74 (150)
                      .+|+.|+++.|+|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            3455666666665544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=88.60  E-value=0.47  Score=34.41  Aligned_cols=67  Identities=16%  Similarity=0.204  Sum_probs=41.8

Q ss_pred             cccCccccceeccCCCcCcccccC----cccCCCCCCCEEeCCCCCCCCccchhhc-------------CCCCCCCeEec
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRK----GAFADNLNLETLTLNKNPKLKIIEEDAL-------------VGLPNLYHLNL   66 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~----~~~~~l~~L~~l~l~~n~~l~~~~~~~~-------------~~l~~L~~l~l   66 (150)
                      ++.+++.|+.+++|.| .+..-.+    ..++.-..|.+|.+++|. +..+...-+             ..-|.|+.+..
T Consensus        87 aLlkcp~l~~v~LSDN-Afg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vic  164 (388)
T COG5238          87 ALLKCPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC  164 (388)
T ss_pred             HHhcCCcceeeecccc-ccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence            3456788889999988 6643221    234566778888998884 766543321             13356666666


Q ss_pred             CCCCcc
Q psy16571         67 KENAFT   72 (150)
Q Consensus        67 ~~n~l~   72 (150)
                      ..|++-
T Consensus       165 grNRle  170 (388)
T COG5238         165 GRNRLE  170 (388)
T ss_pred             ccchhc
Confidence            666553

>KOG3763|consensus

Probab=87.12  E-value=0.43  Score=37.49  Aligned_cols=64  Identities=25%  Similarity=0.247  Sum_probs=44.0

Q ss_pred             cCCCCCCCEEeCCCCCCCCccchh--hcCCCCCCCeEecCCC--CccccCc-CcCCCCCccEEEccCCCc
Q psy16571         30 FADNLNLETLTLNKNPKLKIIEED--ALVGLPNLYHLNLKEN--AFTSFSE-SMLAWPELRTIDIAENPI   94 (150)
Q Consensus        30 ~~~l~~L~~l~l~~n~~l~~~~~~--~~~~l~~L~~l~l~~n--~l~~lp~-~~~~~~~L~~L~l~~N~~   94 (150)
                      -...+.+..+.+++|+ +..+..-  .-...|+|..|+|++|  .+..-++ .-.....|++|-+.|||+
T Consensus       214 ~~n~p~i~sl~lsnNr-L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPl  282 (585)
T KOG3763|consen  214 EENFPEILSLSLSNNR-LYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPL  282 (585)
T ss_pred             hcCCcceeeeecccch-hhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcc
Confidence            3456778888999996 7766531  1134588999999999  4443222 223356788999999998

>KOG3864|consensus

Probab=86.39  E-value=0.097  Score=35.90  Aligned_cols=67  Identities=16%  Similarity=0.265  Sum_probs=29.7

Q ss_pred             CCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCC-c-----cccCcCcCCCCCccEEEccCCCcccccChHHHHHH
Q psy16571         36 LETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENA-F-----TSFSESMLAWPELRTIDIAENPIECGCNILWLREM  106 (150)
Q Consensus        36 L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~-l-----~~lp~~~~~~~~L~~L~l~~N~~~c~c~~~~l~~~  106 (150)
                      ++.++.++.. |..+.-..+.+++.++.|.+.+.. +     ..+-.   -.++|+.|++++++---+-.+.|+..+
T Consensus       103 IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L~~l  175 (221)
T KOG3864|consen  103 IEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDGGLACLLKL  175 (221)
T ss_pred             EEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechhHHHHHHHh
Confidence            4455555443 444443444444555544444332 1     11111   134566666665554444444554433

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.33  E-value=0.5  Score=20.26  Aligned_cols=12  Identities=42%  Similarity=0.573  Sum_probs=4.5

Q ss_pred             CCCeEecCCCCc
Q psy16571         60 NLYHLNLKENAF   71 (150)
Q Consensus        60 ~L~~l~l~~n~l   71 (150)
                      +|+.|+|++|.|
T Consensus         3 ~L~~L~l~~n~i   14 (24)
T PF13516_consen    3 NLETLDLSNNQI   14 (24)
T ss_dssp             T-SEEE-TSSBE
T ss_pred             CCCEEEccCCcC
Confidence            344444444444

...

>KOG3864|consensus

Probab=85.67  E-value=0.15  Score=35.06  Aligned_cols=84  Identities=15%  Similarity=0.184  Sum_probs=53.9

Q ss_pred             ccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhc-CCCCCCCeEecCCC-CccccC-cCcCCCCCccE
Q psy16571         10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDAL-VGLPNLYHLNLKEN-AFTSFS-ESMLAWPELRT   86 (150)
Q Consensus        10 ~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~-~~l~~L~~l~l~~n-~l~~lp-~~~~~~~~L~~   86 (150)
                      .++.++-++. .+....-..+..++.++.+.+.++..+...--.-+ .-.++|+.|+|++| +|++.- ..+..+++|+.
T Consensus       102 ~IeaVDAsds-~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDS-SIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCc-hHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            4667888887 88877766788888888888876652221111111 13488999999977 666432 23445778887


Q ss_pred             EEccCCCc
Q psy16571         87 IDIAENPI   94 (150)
Q Consensus        87 L~l~~N~~   94 (150)
                      |.+.+=+.
T Consensus       181 L~l~~l~~  188 (221)
T KOG3864|consen  181 LHLYDLPY  188 (221)
T ss_pred             HHhcCchh
Confidence            77766544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	150
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		1e-05
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		2e-05
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		3e-05
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		3e-05

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Query: 11  LKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENA 70
           L+ LE++G ++   +R G+F                  +IE +A  GL +L  LNL  N 
Sbjct: 220 LEELEMSG-NHFPEIRPGSF-HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277
Query: 71  FTSFSESMLA-WPELRTIDIAENPIECGCNIL----WLREMLVRRNTSAVFCNSPAPLKY 125
            +S    +      L  + +  NP  C C+IL    WLRE +   +T    C++P  ++ 
Sbjct: 278 LSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRG 337
Query: 126 KSLISL 131
           + L+ +
Sbjct: 338 RYLVEV 343

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Query: 11  LKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENA 70
           L  L+++G ++L+ +R G+F                  +IE +A   L +L  +NL  N 
Sbjct: 209 LDELDLSG-NHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNN 266
Query: 71  FTSFSESMLA-WPELRTIDIAENPIECGCNILWL----REMLVRRNTSAVFCNSPAPLK 124
            T     +      L  I +  NP  C C+ILWL    ++M          CN+P  LK
Sbjct: 267 LTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLK 325

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 3   KEVKGLSYLKRLE---ITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLP 59
           K++  L+ L RLE   ++G + L  +R G+F                   IE +A   L 
Sbjct: 169 KDIPNLTALVRLEELELSG-NRLDLIRPGSFQGLTSLRKLWLMHAQVA-TIERNAFDDLK 226
Query: 60  NLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNIL----WLREMLVRRNTSA 114
           +L  LNL  N   S    +      L  + +  NP  C C++L    WL+E +    T  
Sbjct: 227 SLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCC 286
Query: 115 VFCNSPAPLK 124
             C++PA LK
Sbjct: 287 ARCHAPAGLK 296

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 3   KEVKGLSYLKRLE---ITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLP 59
           K++  L+ L RLE   ++G + L  +R G+F                   IE +A   L 
Sbjct: 169 KDIPNLTALVRLEELELSG-NRLDLIRPGSFQGLTSLRKLWLMHAQVA-TIERNAFDDLK 226
Query: 60  NLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNIL----WLREMLVRRNTSA 114
           +L  LNL  N   S    +      L  + +  NP  C C++L    WL+E +    T  
Sbjct: 227 SLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCC 286
Query: 115 VFCNSPAPLK 124
             C++PA LK
Sbjct: 287 ARCHAPAGLK 296

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-27
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-25
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-20
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	3e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-04

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  102 bits (257), Expect = 8e-27
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 7/136 (5%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
             L  L+ LE++G ++   +R G+F    +L+ L +  + ++ +IE +A  GL +L  LN
Sbjct: 215 TPLVGLEELEMSG-NHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELN 272

Query: 66  LKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR----NTSAVFCNSP 120
           L  N  +S    +      L  + +  NP  C C+ILWL   L       +T    C++P
Sbjct: 273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAP 332

Query: 121 APLKYKSLISLSAEDL 136
             ++ + L+ +     
Sbjct: 333 MHMRGRYLVEVDQASF 348

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.9 bits (135), Expect = 4e-10
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           + LS L+ L +   + +  +   AF    +L  L L +  KL+ I E A  GL NL +LN
Sbjct: 144 EYLSKLRELWL-RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202

Query: 66  LKENAFTSFSE-SMLAWPELRTIDIAENPIE 95
           L           + L    L  ++++ N   
Sbjct: 203 LGMCNIKDMPNLTPL--VGLEELEMSGNHFP 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.1 bits (133), Expect = 7e-10
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           + L +L+ L++   +++ ++  GAF    +L TL L  N  L +I   A   L  L  L 
Sbjct: 96  RHLHHLEVLQLGR-NSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAEN 92
           L+ N   S         P L  +D+ E 
Sbjct: 154 LRNNPIESIPSYAFNRVPSLMRLDLGEL 181

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
            L+ V +G  +   N   L L +N  +++I+ D    L +L  L L  N+          
Sbjct: 65  GLSEVPQGIPS---NTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN 120

Query: 81  W-PELRTIDIAENPI 94
               L T+++ +N +
Sbjct: 121 GLASLNTLELFDNWL 135

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (252), Expect = 5e-26
 Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           + L YL+ L ++  + ++ +      + L L+ + L    +L ++E  A  GL  L  LN
Sbjct: 245 RHLVYLRFLNLSY-NPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLN 302

Query: 66  LKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVR--RNTSAVFCNSPAP 122
           +  N  T+  ES+      L T+ +  NP+ C C +LW+     R   N     C +P  
Sbjct: 303 VSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEF 362

Query: 123 LKYKSLISLSAEDLGS 138
           ++ K         L +
Sbjct: 363 VQGKEFKDFPDVLLPN 378

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.0 bits (151), Expect = 3e-12
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           + L  LK LE+   ++L  +   AF+   +LE LTL K   L  I  +AL  L  L  L 
Sbjct: 125 QDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLR 182

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENPI 94
           L+     +  +        L+ ++I+  P 
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.4 bits (139), Expect = 9e-11
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
             L  L+ L +   + L  +  G F    NL  L +++N K+ I+ +     L NL  L 
Sbjct: 77  NNLFNLRTLGLRS-NRLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLE 134

Query: 66  LKENAFTSFSESMLA-WPELRTIDIAENPIE 95
           + +N     S    +    L  + + +  + 
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
            GLS L +L+I+  + +  +    F D  NL++L +  N  L  I   A  GL +L  L 
Sbjct: 101 TGLSNLTKLDISE-NKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLT 158

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENPIEC 96
           L++   TS     L+    L  + +    I  
Sbjct: 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 9   SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 68
           +  + L++   + +  + +  FA   +LE L LN+N  +  +E  A   L NL  L L+ 
Sbjct: 32  TETRLLDLGK-NRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRS 89

Query: 69  NAFTSFSESMLAW-PELRTIDIAENPIEC 96
           N        +      L  +DI+EN I  
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIVI 118

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
            L  L  L +    N+  +R  +F     L+ L ++  P L  +  + L GL NL  L++
Sbjct: 174 HLHGLIVLRLRH-LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSI 231

Query: 67  KENAFTSFSESMLAW-PELRTIDIAENPIE 95
                T+     +     LR ++++ NPI 
Sbjct: 232 THCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 99.1 bits (247), Expect = 2e-25
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 7/136 (5%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
             L  L  L+++G ++L+ +R G+F   ++L+ L + ++ ++++IE +A   L +L  +N
Sbjct: 204 TPLIKLDELDLSG-NHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEIN 261

Query: 66  LKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR----NTSAVFCNSP 120
           L  N  T     +      L  I +  NP  C C+ILWL   +             CN+P
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTP 321

Query: 121 APLKYKSLISLSAEDL 136
             LK + +  L     
Sbjct: 322 PNLKGRYIGELDQNYF 337

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.5 bits (134), Expect = 5e-10
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           K L +L+ L+++  +++  +  GAF    NL TL L  N +L  I   A V L  L  L 
Sbjct: 85  KHLRHLEILQLSR-NHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW 142

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENP 93
           L+ N   S         P LR +D+ E  
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGELK 171

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
             LS LK L +   + +  +   AF    +L  L L +  +L  I E A  GL NL +LN
Sbjct: 133 VYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191

Query: 66  LKENAFTSFSE-SMLAWPELRTIDIAENPIE 95
           L           + L   +L  +D++ N + 
Sbjct: 192 LAMCNLREIPNLTPL--IKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
            +  ++  +F    +LE L L++N  ++ IE  A  GL NL  L L +N  T+       
Sbjct: 75  QIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133

Query: 81  W-PELRTIDIAENPIE 95
           +  +L+ + +  NPIE
Sbjct: 134 YLSKLKELWLRNNPIE 149

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 95.4 bits (238), Expect = 6e-25
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
            L  L  L + G + ++ V + AF    +L+ L L++N ++  +   A   L  L  L L
Sbjct: 151 DLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYL 208

Query: 67  KENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLV--RRNTSAVFCNSPAPL 123
             N  ++     LA    L+ + + +NP  C C    L   L   R ++S V C+ P  L
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL 268

Query: 124 KYKSLISLSAEDL 136
             + L  L+A DL
Sbjct: 269 AGRDLKRLAANDL 281

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           +    L  L +   + L R+   AF     LE L L+ N +L+ ++     GL  L+ L+
Sbjct: 53  RACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENPI 94
           L           +      L+ + + +N +
Sbjct: 112 LDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
           L  V  G  A     + + L+ N ++  +   +     NL  L L  N       +   
Sbjct: 22 GLQAVPVGIPAA---SQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77

Query: 81 W-PELRTIDIAENP 93
              L  +D+++N 
Sbjct: 78 GLALLEQLDLSDNA 91

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 88.6 bits (219), Expect = 6e-22
 Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 1/113 (0%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
            G   L  L I    +L  +          L  LT+ K+  L+ +  DA    P L  LN
Sbjct: 28  PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLN 86

Query: 66  LKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCN 118
           L  NA  S S   +    L+ + ++ NP+ C C + WL+              
Sbjct: 87  LSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQK 139

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.7 bits (210), Expect = 9e-21
 Identities = 22/134 (16%), Positives = 51/134 (38%), Gaps = 9/134 (6%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
             L  L  L+++    L ++   AF    +L+ L ++ N     ++      L +L  L+
Sbjct: 172 TELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLD 229

Query: 66  LKENAFTSFSESMLA--WPELRTIDIAENPIECGCNILWLREMLVRR-----NTSAVFCN 118
              N   +  +  L      L  +++ +N   C C      + +  +         + C 
Sbjct: 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 289

Query: 119 SPAPLKYKSLISLS 132
           +P+  +   ++SL+
Sbjct: 290 TPSDKQGMPVLSLN 303

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 11  LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP-KLKIIEEDALVGLPNLYHLNLKEN 69
             RLE+   + L  +  G F     L  L+L+ N    K     +  G  +L +L+L  N
Sbjct: 30  ATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 70  AFTSFSESMLAWPELRTIDIAENPIE 95
              + S + L   +L  +D   + ++
Sbjct: 89  GVITMSSNFLGLEQLEHLDFQHSNLK 114

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
            G + LK L+++  + +  +    F     LE L    +   ++ E    + L NL +L+
Sbjct: 75  FGTTSLKYLDLSF-NGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENPI 94
           +           +      L  + +A N  
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 81.6 bits (202), Expect = 4e-20
 Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 7/134 (5%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           GL  L  L + G + +T + K  F + L +L+ L LN N K+  +  DA   L NL  L+
Sbjct: 78  GLRSLNSLVLYG-NKITELPKSLF-EGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLS 134

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSPAP 122
           L +N   + ++   +    ++T+ +A+NP  C C++ WL + L      TS   C SP  
Sbjct: 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRR 194

Query: 123 LKYKSLISLSAEDL 136
           L  K +  + ++  
Sbjct: 195 LANKRIGQIKSKKF 208

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 76.2 bits (188), Expect = 5e-18
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 7/134 (5%)

Query: 7   GLSYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           G S +  + +T   N L  V+   F    +L+TL L  N ++  +  D+ +GL ++  L+
Sbjct: 79  GASGVNEILLTS--NRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLS 135

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAP 122
           L +N  T+ +         L T+++  NP  C C + WL E L ++   T    C  P  
Sbjct: 136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYF 195

Query: 123 LKYKSLISLSAEDL 136
           LK   +  ++ +D 
Sbjct: 196 LKEIPIQDVAIQDF 209

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.8 bits (192), Expect = 8e-18
 Identities = 20/133 (15%), Positives = 49/133 (36%), Gaps = 8/133 (6%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
              + L  L+++    L ++  G F     L+ L ++ N  L  ++      L +L  L+
Sbjct: 470 ANTTNLTFLDLSK-CQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLD 527

Query: 66  LKENAFTSFSESMLAWPE-LRTIDIAENPIECGCNILWLREMLVRRNT-----SAVFCNS 119
              N   +    +  +P+ L   ++  N + C C      + +  +         + C +
Sbjct: 528 CSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCAT 587

Query: 120 PAPLKYKSLISLS 132
           P  +    ++  +
Sbjct: 588 PVEMNTSLVLDFN 600

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
              S L+ L+++    +  +   A+    +L  L L  N  ++     +  GL +L +L 
Sbjct: 53  SNFSELQWLDLSR-CEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLV 110

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENPI 94
             E    S     +     L+ +++A N I
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHNFI 140

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
           GL +L  L +TG + +     G+F+   +LE L   +  KL  +E   +  L  L  LN+
Sbjct: 78  GLHHLSNLILTG-NPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNV 135

Query: 67  KENAFTSFS--ESMLAWPELRTIDIAENPIEC 96
             N   S            L  +D++ N I+ 
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query: 9   SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 68
           S  K ++++  + L  ++  +F++   L+ L L++  +++ IE+ A  GL +L +L L  
Sbjct: 32  SSTKNIDLSF-NPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTG 89

Query: 69  NAFTSFSESMLAW-PELRTIDIAENPIEC 96
           N   SFS    +    L  +   E  +  
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLAS 118

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
           G + L+ L++  + N   +    F     L+ L    +   ++ E  A + L  L +L++
Sbjct: 374 GTNSLRHLDL--SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431

Query: 67  KENAFTSFSESMLAW-PELRTIDIAENPI 94
                    + +      L T+ +A N  
Sbjct: 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
            GL+ L+ L     + L  +        + L+ L +  N             L NL H++
Sbjct: 101 SGLTSLENLVAVE-TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159

Query: 66  LKENAFTSFSESMLAW-----PELRTIDIAENPIEC 96
           L  N   + + + L +         ++D++ NPI+ 
Sbjct: 160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 7/94 (7%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNL--- 61
             L  LK+L +   + +   +  A+  NL NL  + L+ N  ++ I  + L  L      
Sbjct: 125 GQLITLKKLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQV 182

Query: 62  -YHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
              L++  N      +      +L  + +  N  
Sbjct: 183 NLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 216

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.8 bits (176), Expect = 9e-16
 Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 15/136 (11%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVG---LPNLY 62
             L  L+ L +   +++  V + AF D   L+ L L++N ++     + +     LP L 
Sbjct: 109 SDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLM 166

Query: 63  HLNLKENAFTSFSESM---LAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF--- 116
            L+L  N       +    L       + +  NP+EC C +  L      R  S+V    
Sbjct: 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQ 226

Query: 117 ----CNSPAPLKYKSL 128
               C     L     
Sbjct: 227 EDLYCMHSKKLHNIFS 242

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 4e-08
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 21  NLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 79
           NL+R+R       L NL +L L+ N  L  I  +A V +PNL +L+L  N   +  E + 
Sbjct: 50  NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLF 108

Query: 80  AW-PELRTIDIAENPIE 95
           +    L  + +  N I 
Sbjct: 109 SDLQALEVLLLYNNHIV 125

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.7 bits (171), Expect = 6e-15
 Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 32/158 (20%)

Query: 6   KGLSYLKRLEITG--ASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYH 63
            GL  L+ L + G         +  +      LE L L+    L  I++ A   L  + H
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNH 504

Query: 64  LNLKENAFTSFSESMLA------------------------WPELRTIDIAENPIECGCN 99
           ++L  N  TS S   L+                          + RTI++ +NP++C C+
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564

Query: 100 ILWLREMLVRRNT-----SAVFCNSPAPLKYKSLISLS 132
            ++  E                C +P  L+   L  ++
Sbjct: 565 NIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVT 602

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 7e-10
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
             L  L  L++T    +  + +  F     L+TL L  N  L  + E AL G   L HL 
Sbjct: 54  SRLINLTFLDLTR-CQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLF 111

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENPI 94
             +   +S     L     L ++ +  N I
Sbjct: 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHI 141

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
               L  L +T  + L  + + A +    L+ L   +   +  I+   L     L  L L
Sbjct: 79  SQHRLDTLVLTA-NPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYL 136

Query: 67  KENAFTSFSESMLAW-PELRTIDIAENPIE 95
             N  +S          +L+ +D   N I 
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           + LS+L+ L ++  +    ++  AF +   LE L L          +     L  L  LN
Sbjct: 373 RNLSHLQSLNLSY-NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENPIE 95
           L  +     SE +    P L+ +++  N   
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 7e-08
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 2/75 (2%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
            L  ++   F+  +NL  L L +  ++  I ED       L  L L  N     +E+ L+
Sbjct: 44  VLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102

Query: 81  W-PELRTIDIAENPI 94
               L+ +   +  I
Sbjct: 103 GPKALKHLFFIQTGI 117

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 8e-08
 Identities = 19/98 (19%), Positives = 43/98 (43%), Gaps = 4/98 (4%)

Query: 1   MEKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN 60
           +   + GLS LK+L ++  +    + + + ++  +L  L++  N K   +    L  L N
Sbjct: 293 LPSGLVGLSTLKKLVLSA-NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351

Query: 61  LYHLNLKENAFTSFSESMLAW---PELRTIDIAENPIE 95
           L  L+L  +   +     L       L++++++ N   
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIE--EDALVGLPNLYH 63
                L  L I G +    +  G   +  NL  L L+ +  ++  +     L  L +L  
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQS 380

Query: 64  LNLKENAFTSFSESMLA-WPELRTIDIAENPIE 95
           LNL  N   S         P+L  +D+A   ++
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 7/95 (7%)

Query: 6   KGLSYLKRLEITGASNLTRV-RKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 64
           K    L+ L++   + L     +  F +   L+ L L+ +  L I  E    GLP L HL
Sbjct: 397 KECPQLELLDLAF-TRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHL 454

Query: 65  NLKENAFTSFSESMLAW----PELRTIDIAENPIE 95
           NL+ N F   +            L  + ++   + 
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 22/139 (15%), Positives = 46/139 (33%), Gaps = 10/139 (7%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
            G   LK L     + ++ +      +   LE+L L  N  +  I+         L  L+
Sbjct: 102 SGPKALKHLFFIQ-TGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLD 159

Query: 66  LKENAFTSFSESMLA-WPELR--TIDIAENPIEC----GCNILWLREMLVRRN-TSAVFC 117
            + NA    S+  ++   +    ++++  N I        +    + +         V  
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219

Query: 118 NSPAPLKYKSLISLSAEDL 136
                   +SL   + ED+
Sbjct: 220 KGLKNSTIQSLWLGTFEDM 238

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 4/91 (4%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFAD--NLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 64
            +  L         +   +    F     +++E++ L K+     I  +       L  L
Sbjct: 226 TIQSLWLGTFED-MDDEDISPAVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSGLQEL 283

Query: 65  NLKENAFTSFSESMLAWPELRTIDIAENPIE 95
           +L     +     ++    L+ + ++ N  E
Sbjct: 284 DLTATHLSELPSGLVGLSTLKKLVLSANKFE 314

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.9 bits (166), Expect = 3e-14
 Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 12/137 (8%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           +GLS+L+ L +   + L  +  G F+    L  L+LN N +L ++  + L    NL  L+
Sbjct: 477 EGLSHLQVLYLNH-NYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDL--PANLEILD 532

Query: 66  LKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREML------VRRNTSAVFCNS 119
           +  N   + +  +     L  +DI  N   C C +      L      +    + ++C  
Sbjct: 533 ISRNQLLAPNPDVF--VSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVY 590

Query: 120 PAPLKYKSLISLSAEDL 136
           P      SL SLS E  
Sbjct: 591 PDSFSGVSLFSLSTEGC 607

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 8e-10
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 6/113 (5%)

Query: 6   KGLSYLKRLEITGASNLTR--VRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYH 63
           +GL +L  L +     L+   ++ G F +   L  L L+KN    +    +   L +L  
Sbjct: 94  QGLFHLFELRLYF-CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152

Query: 64  LNLKENAFTSFSESMLAW---PELRTIDIAENPIECGCNILWLREMLVRRNTS 113
           ++   N      E  L       L    +A N +    ++ W + M   RN  
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 1e-09
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
             L  L+ LE+        + K AF +  NL  L L  + K+  +  DA  GL +L+ L 
Sbjct: 45  PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELR 103

Query: 66  LKENAFTSFSESMLAW---PELRTIDIAENPI 94
           L     +        +     L  +D+++N I
Sbjct: 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 2/91 (2%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           + L+  +RL ++  + +  V   +F     L+ L L        I+++A   LPNL  L+
Sbjct: 21  QVLNTTERLLLSF-NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENPIE 95
           L  +               L  + +    + 
Sbjct: 80  LGSSKIYFLHPDAFQGLFHLFELRLYFCGLS 110

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 8   LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
            S ++ L+++    +  +    F    +L+ L L  N K+  I ++A  GL NL  LNL 
Sbjct: 265 RSSVRHLDLSH-GFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNLS 322

Query: 68  ENAFTSFSESMLAW-PELRTIDIAENPI 94
            N       S     P++  ID+ +N I
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKNHI 350

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 5e-08
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
            GL  L+ L ++  + L  +    F     +  + L KN  + II++     L  L  L+
Sbjct: 311 YGLDNLQVLNLSY-NLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLD 368

Query: 66  LKENAFTSFSESMLAWPELRTIDIAENPIEC 96
           L++NA T+        P +  I ++ N +  
Sbjct: 369 LRDNALTTIH----FIPSIPDIFLSGNKLVT 395

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 21  NLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 79
            L  +    F   + +L+ L LN+N       +      P+L  L L EN      E+ L
Sbjct: 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471

Query: 80  AW------PELRTIDIAENPIE 95
            W        L+ + +  N + 
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLN 493

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 22/134 (16%), Positives = 51/134 (38%), Gaps = 9/134 (6%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
             L  L  L+++    L ++   AF    +L+ L ++ N     ++      L +L  L+
Sbjct: 467 TELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLD 524

Query: 66  LKENAFTSFSESMLA--WPELRTIDIAENPIECGCNILWLREMLVRRNT-----SAVFCN 118
              N   +  +  L      L  +++ +N   C C      + +  +         + C 
Sbjct: 525 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 584

Query: 119 SPAPLKYKSLISLS 132
           +P+  +   ++SL+
Sbjct: 585 TPSDKQGMPVLSLN 598

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
                L+ L+++    +  +  GA+    +L TL L  N  ++ +   A  GL +L  L 
Sbjct: 49  FSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENPIE 95
             E    S     +     L+ +++A N I+
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 9   SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 68
              K L+++  + L  +   +F     L+ L L++  +++ IE+ A   L +L  L L  
Sbjct: 28  FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG 85

Query: 69  NAFTSFSESMLAW-PELRTIDIAENPI 94
           N   S +    +    L+ +   E  +
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNL 112

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 8   LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE--DALVGLPNLYHLN 65
           L  LKRL     ++       +  D  +LE L L++N  L        +  G  +L +L+
Sbjct: 324 LKSLKRLTF---TSNKGGNAFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLD 379

Query: 66  LKENAFTSFSESMLAWPELRTIDIAENPI 94
           L  N   + S + L   +L  +D   + +
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNL 408

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
           G + LK L+++  + +  +    F     LE L    +   ++ E    + L NL +L++
Sbjct: 371 GTTSLKYLDLSF-NGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 67  KENAFTSFSESMLAW-PELRTIDIAENPI 94
                      +      L  + +A N  
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
           GLS L++L     +NL  +          L+ L +  N        +    L NL HL+L
Sbjct: 98  GLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 67  KENAFTSFSESMLAW-----PELRTIDIAENPIEC 96
             N   S   + L           ++D++ NP+  
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 7/95 (7%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNL--- 61
             L  LK L +   + +   +   +  NL NLE L L+ N K++ I    L  L  +   
Sbjct: 121 GHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLL 178

Query: 62  -YHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 95
              L+L  N              L  + +  N   
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS 213

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 5e-13
 Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 5/111 (4%)

Query: 7   GLSYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           GL  L+ L +    N L  +  G       LE L+L  N  L  +    L GL NL  L 
Sbjct: 122 GLGELQELYL--KGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLL 178

Query: 66  LKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF 116
           L+EN+  +  +       L    +  NP  C C IL+ R  L + N   V+
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDNAENVY 228

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 3/75 (4%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
            L             L  L L++    ++ +      LP L  L+L  N   S       
Sbjct: 42  LLYTFSLATLMPYTRLTQLNLDRA---ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQT 98

Query: 81  WPELRTIDIAENPIE 95
            P L  +D++ N + 
Sbjct: 99  LPALTVLDVSFNRLT 113

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.5 bits (152), Expect = 2e-12
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 6/108 (5%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           GL++L +L ++  + L  +    F +NL  LE L L+ N  ++ + + + +GLPNL  L 
Sbjct: 321 GLTHLLKLNLSQ-NFLGSIDSRMF-ENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELA 377

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENPIECGCN-ILWLREMLVRRN 111
           L  N   S  + +      L+ I +  NP +C C  I +L   L + +
Sbjct: 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 425

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLK--IIEEDALVGLPNLYHL 64
           GLS L  L++   +   ++  GAF    NLE LTL +   L   ++  +    L +L  L
Sbjct: 77  GLSSLIILKLDY-NQFLQLETGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEML 134

Query: 65  NLKENAFTSFSESML--AWPELRTIDIAENPIECGCN 99
            L++N       +           +D+  N ++  C 
Sbjct: 135 VLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
            +  + K  F+   +LE LTL +N ++  I+++A  GL +L  LNL +N   S    M  
Sbjct: 286 KIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344

Query: 81  W-PELRTIDIAENPIEC 96
              +L  +D++ N I  
Sbjct: 345 NLDKLEVLDLSYNHIRA 361

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
             L  L+ L++   +    +R   F    +L  L L+ N +   +E  A  GL NL  L 
Sbjct: 51  SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLT 109

Query: 66  LKENAFTS 73
           L +     
Sbjct: 110 LTQCNLDG 117

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
           ++  + + +F+   +L+ L + +     +I  +   GL +L  L L  N F         
Sbjct: 41  SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100

Query: 81  W-PELRTIDIAENPIE 95
               L  + + +  ++
Sbjct: 101 GLANLEVLTLTQCNLD 116

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 59.0 bits (143), Expect = 3e-12
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 57  GLP-NLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRNTSA 114
             P +   L L  N  T+    +L   P LRT  +  NP  C C ++ LR  L  R   A
Sbjct: 28  AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERA 87

Query: 115 ----VFCNSPAPLKYKSLISLSAEDLGS 138
               + C +P  L+ + L  L+ ++L +
Sbjct: 88  PYRDLRCVAPPALRGRLLPYLAEDELRA 115

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.5 bits (147), Expect = 7e-12
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 10/125 (8%)

Query: 6   KGLSYLKRLEITG----ASNLTRVRKGAFADNLNLETLTLNKNPKLKIIE-EDALVGLPN 60
              S ++ LE+        + + +  G     +   T    K     + +    L  +  
Sbjct: 219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278

Query: 61  LYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCN-ILWLREMLVR---RNTSAV 115
           L  L    N   S  + +      L+ I +  NP +C C  I +L   L +   +   + 
Sbjct: 279 LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA 338

Query: 116 FCNSP 120
            C+  
Sbjct: 339 KCSGS 343

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
            L+ L+ L +      T++++  FA    LE L ++ +  L+  E  +L  + N+ HL L
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLIL 205

Query: 67  KENAFTSFSESMLAW-PELRTIDIAENPIE 95
                    E  +     +  +++ +  ++
Sbjct: 206 HMKQHILLLEIFVDVTSSVECLELRDTDLD 235

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
            +T +        +NL+ L L  N  +  IEED+   L +L HL+L  N  ++ S S   
Sbjct: 63  RITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121

Query: 81  W-PELRTIDIAENPIEC 96
               L  +++  NP + 
Sbjct: 122 PLSSLTFLNLLGNPYKT 138

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 11/97 (11%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
           GL++L+ LEI  AS+L      +     N+  L L+      ++ E  +    ++  L L
Sbjct: 172 GLTFLEELEI-DASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLEL 229

Query: 67  KENAFTSFSESMLA---------WPELRTIDIAENPI 94
           ++    +F  S L+             R + I +  +
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.0 bits (117), Expect = 9e-08
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 3/90 (3%)

Query: 7   GLSYLKRLEITGASNLTRVR-KGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
            LS L  L + G +    +     F+    L+ L +        I+     GL  L  L 
Sbjct: 122 PLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENPI 94
           +  +   S+    L     +  + +     
Sbjct: 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQH 210

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 59.2 bits (144), Expect = 7e-12
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 23/142 (16%)

Query: 6   KGLSYLKRLEITGASN-LTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYH 63
             L +L +LE+    N LT +   AF +   +++ L L +N K+K I     +GL  L  
Sbjct: 51  GRLPHLVKLELK--RNQLTGIEPNAF-EGASHIQELQLGEN-KIKEISNKMFLGLHQLKT 106

Query: 64  LNLKEN--------AFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRR--NTS 113
           LNL +N        +F   +        L ++++A NP  C C++ W  E L ++  N  
Sbjct: 107 LNLYDNQISCVMPGSFEHLNS-------LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGG 159

Query: 114 AVFCNSPAPLKYKSLISLSAED 135
           A  C +P+ ++   +  L   +
Sbjct: 160 AARCGAPSKVRDVQIKDLPHSE 181

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.6 bits (145), Expect = 9e-12
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
             L  + R+ ++    L ++   +F +   +  + +     L  I+ DAL  LP L  L 
Sbjct: 52  SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111

Query: 66  LKENAFTSFSESMLAW--PELRTIDIAENP 93
           +       F +    +       ++I +NP
Sbjct: 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNP 141

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN-AFTSFSESML 79
           +L  +   AF++  N+  + ++ +  L+ +E  +   L  + H+ ++     T      L
Sbjct: 42  HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101

Query: 80  AW-PELRTIDIAENPIE 95
              P L+ + I    ++
Sbjct: 102 KELPLLKFLGIFNTGLK 118

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN-LYHLNLKENAFTSFSESML 79
             T V+  AF +   L+ + LNKN  L +I++DA  G+ +    L++ + + T+     L
Sbjct: 167 GFTSVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225

Query: 80  A 80
            
Sbjct: 226 E 226

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.5 bits (144), Expect = 2e-11
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 1/89 (1%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
            G   L+++EI+    L  +    F++   L  + + K   L  I  +A   LPNL +L 
Sbjct: 51  SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110

Query: 66  LKENAFTSFSE-SMLAWPELRTIDIAENP 93
           +         +   +   +   +DI +N 
Sbjct: 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNI 139

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.9 bits (127), Expect = 3e-09
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL-KENAFTSFSESML 79
            L  ++KGAF+   +LE + +++N  L++IE D    LP L+ + + K N     +    
Sbjct: 41  KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100

Query: 80  AW-PELRTIDIAENPIE 95
              P L+ + I+   I+
Sbjct: 101 QNLPNLQYLLISNTGIK 117

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.5 bits (126), Expect = 5e-09
 Identities = 22/136 (16%), Positives = 38/136 (27%), Gaps = 27/136 (19%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
           GLS+   +     + +  +   AF +   L+ L L+ N  L+ +  D   G      L++
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 67  KENAFTSFSESMLAW---------------------PELRTIDIAENPIECGCNILWLRE 105
                 S     L                         L    +   P  C     W R+
Sbjct: 210 SRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT-YPSHCCAFANWRRQ 268

Query: 106 MLVRRNTSAVFCNSPA 121
           +    +     CN   
Sbjct: 269 I----SELHPICNKSI 280

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.2 bits (120), Expect = 3e-08
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLP-NLYHL 64
           + L  L+ L I+  + +  +       +L    L +  N  +  IE ++ VGL      L
Sbjct: 101 QNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159

Query: 65  NLKENAFTSFSESMLAWPELRTIDIAEN 92
            L +N       S     +L  +++++N
Sbjct: 160 WLNKNGIQEIHNSAFNGTQLDELNLSDN 187

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 31/170 (18%), Positives = 53/170 (31%), Gaps = 43/170 (25%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGA--------FADNLNLETLTLNKNPKLKIIEEDALVG 57
           +GL  L+ L++   +NL R+ K A             +L  L L  N     I  +    
Sbjct: 501 EGLEKLEILDLQH-NNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKD 558

Query: 58  LPNLYHLNLKENAFTSFSESMLA--------------------------WPELRTIDIAE 91
           L  L  ++L  N   +   S+                            +  L  +D+  
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

Query: 92  NPIECGC-NILWLREML------VRRNTSAVFCNSPAPLKYKSLISLSAE 134
           NP +C C +I W    +      +   +S   CN+P       +      
Sbjct: 619 NPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTS 668

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
             + L  L +   +++ +++   F    NL TL L+ N  L   +    V L NL  L L
Sbjct: 95  FCTNLTELHLMS-NSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLL 152

Query: 67  KENAFTSFSESMLAW---PELRTIDIAENPIE 95
             N   +     L       L+ ++++ N I+
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIK 184

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 8   LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
            + +  L +T  + L R+    F     L +L +  N  +  +E +    LP L  LNL+
Sbjct: 24  PTNITVLNLTH-NQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQ 81

Query: 68  ENAFTSFSESMLAW-PELRTIDIAENPIE 95
            N  +  S+   A+   L  + +  N I+
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNSIQ 110

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
              S L  L++   + ++++          L+ L L  N +L  + +       NL  L+
Sbjct: 46  TRYSQLTSLDVGF-NTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH 103

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENPI 94
           L  N+      +       L T+D++ N +
Sbjct: 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
             S L  L +T  + ++++   AF+   +LE L L  N   + +      GL N++ + L
Sbjct: 379 AHSPLHILNLTK-NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437

Query: 67  KENAFTSFSESMLAW-PELRTIDIAENPIE 95
             N +   + +  A  P L+ + +    ++
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 4/93 (4%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
             L +L+ L++        +    +    N+  + L+ N K   +  ++   +P+L  L 
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLM 460

Query: 66  LKENAFTSFSESMLAW---PELRTIDIAENPIE 95
           L+  A  +   S   +     L  +D++ N I 
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN--------PKLKIIEEDALVG 57
             L  L+   +   +N+  +   +     N+  L L ++          L  I++ +   
Sbjct: 269 AWLPQLEYFFLEY-NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 58  LPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIE 95
           L  L HLN+++N       +M      L+ + ++ +   
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 8   LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
           L      +    ++L ++   +F     LE L +  N  +  I+ +   GL NL +L+L 
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLS 361

Query: 68  ENAFTSFSE-----SMLAWPELRTIDIAENPI 94
            +  +  +        LA   L  +++ +N I
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFA--DNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 64
             + ++ L ++  S L+      F      NL  L L+ N  L ++  D+   LP L + 
Sbjct: 220 ANTSIRNLSLSN-SQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYF 277

Query: 65  NLKENAFTSFSESMLAW-PELRTIDIAEN 92
            L+ N         L     +R +++  +
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 13/100 (13%)

Query: 7   GLSYLKRLEITGASNLTRVRK--GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 64
            +  L+RL +     L  V      F    NL  L L+ N  +  I +D L GL  L  L
Sbjct: 452 LVPSLQRLMLRR-VALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEIL 509

Query: 65  NLKENAFTSFSESMLAW---------PELRTIDIAENPIE 95
           +L+ N      +                L  +++  N  +
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.1 bits (133), Expect = 6e-10
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 35  NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENP 93
            L+ L +++N KLK + + +L   P L  + +  N   S  + +      L+ I +  NP
Sbjct: 452 RLQELYISRN-KLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508

Query: 94  IECGCN-ILWLREML---VRRNTSAVFCNSP 120
            +C C  I +L   L    ++   +  C+  
Sbjct: 509 WDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 539

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
            L+ L+ L I      + +R+  FA   +L  L +     L+  +  +L  + +++HL L
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTL 179

Query: 67  KENAFTSFSESMLAW-PELRTIDIAENPIEC 96
             +      E        +R +++ +  +  
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
            LS LK L + G +    +   +   NL NL+TL +        I      GL +L  L 
Sbjct: 96  PLSSLKYLNLMG-NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENPIEC 96
           +K  +  ++    L    ++  + +  +    
Sbjct: 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 9e-08
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
            +T +  G      NL+ L L  + ++  IE DA   L +L HL+L +N  +S S S   
Sbjct: 37  KITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95

Query: 81  W-PELRTIDIAENPI 94
               L+ +++  NP 
Sbjct: 96  PLSSLKYLNLMGNPY 110

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 8   LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
              ++RL I     L       ++    ++ +T+  + K+ ++       L +L  L+L 
Sbjct: 285 TVTIRRLHIPQ-FYLFYDLSTVYSLLEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLS 342

Query: 68  ENAFTSF----SESMLAWPELRTIDIAENPIE 95
           EN         S    AWP L+T+ +++N + 
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
             L  L+ L+++  ++L+ +    F    +L+ L L  NP   +        L NL  L 
Sbjct: 71  YSLGSLEHLDLSD-NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129

Query: 66  L-KENAFTSFSESMLAW-PELRTIDIAENPIE 95
           +     F+       A    L  ++I    + 
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 6   KGLSYLKRLEITG--ASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALV--GLPNL 61
           + L  L+ L+++                   +L+TL L++N  L+ +++   +   L NL
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNL 389

Query: 62  YHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 95
             L++  N F    +S     ++R ++++   I 
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
            GL+ L  LEI    +L   +  +     ++  LTL+ + +   + E     L ++ +L 
Sbjct: 145 AGLTSLNELEIKA-LSLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLE 202

Query: 66  LKENAFTSFSESML 79
           L++     F  S L
Sbjct: 203 LRDTNLARFQFSPL 216

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.2 bits (130), Expect = 2e-09
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
                ++ L +     +  +   AFA    ++ L +  N  ++ +       +P L  L 
Sbjct: 72  DSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLV 129

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENPIE 95
           L+ N  +S    +    P+L T+ ++ N +E
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.6 bits (126), Expect = 6e-09
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 4/90 (4%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           + +  L  L +   ++L+ + +G F +   L TL+++ N  L+ IE+D      +L +L 
Sbjct: 120 QNVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQ 177

Query: 66  LKENAFTSFSESMLAWPELRTIDIAENPIE 95
           L  N  T    S++  P L   +++ N + 
Sbjct: 178 LSSNRLTHVDLSLI--PSLFHANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 8   LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
           L+  K +     S + ++          +E L LN   +++ I+  A      +  L + 
Sbjct: 50  LNNQKIVTFKN-STMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMG 107

Query: 68  ENAFTSFSESMLAW-PELRTIDIAENPIE 95
            NA       +    P L  + +  N + 
Sbjct: 108 FNAIRYLPPHVFQNVPLLTVLVLERNDLS 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.8 bits (116), Expect = 1e-07
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 28  GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTI 87
               +   L  + L+ N +L+ I     V +  L  L +  N   + +      P L+ +
Sbjct: 248 AWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306

Query: 88  DIAENPIE 95
           D++ N + 
Sbjct: 307 DLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 21/156 (13%), Positives = 47/156 (30%), Gaps = 25/156 (16%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
               L  ++++  + L ++    F     LE L ++ N +L  +       +P L  L+L
Sbjct: 252 NYPGLVEVDLSY-NELEKIMYHPFVKMQRLERLYISNN-RLVALNL-YGQPIPTLKVLDL 308

Query: 67  KENAFTSFSESML---------------------AWPELRTIDIAENPIECGCNILWLRE 105
             N       +                           L+ + ++ N  +C       R 
Sbjct: 309 SHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRN 368

Query: 106 MLVRR-NTSAVFCNSPAPLKYKSLISLSAEDLGSRV 140
           +     + +   C     L++      S +    R+
Sbjct: 369 VARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRL 404

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 6e-06
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
               L  L ++  +NL R+    F    +L+ L L+ N +L  ++   +   P+L+H N+
Sbjct: 145 NTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLI---PSLFHANV 199

Query: 67  KENAFTSFSESMLAWPELRTIDIAENPIE 95
             N  ++ +        +  +D + N I 
Sbjct: 200 SYNLLSTLAIP----IAVEELDASHNSIN 224

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 4/90 (4%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           + +  L  L +   ++L+ + +G F +   L TL+++ N  L+ IE+D      +L +L 
Sbjct: 114 QNVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQ 171

Query: 66  LKENAFTSFSESMLAWPELRTIDIAENPIE 95
           L  N  T    S++  P L   +++ N + 
Sbjct: 172 LSSNRLTHVDLSLI--PSLFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
                ++ L +     +  +   AFA    ++ L +  N  ++ +       +P L  L 
Sbjct: 66  DSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLV 123

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENPIE 95
           L+ N  +S    +    P+L T+ ++ N +E
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 154

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 8   LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
           L+  K +     S + ++          +E L LN   +++ I+  A      +  L + 
Sbjct: 44  LNNQKIVTFKN-STMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMG 101

Query: 68  ENAFTSFSESMLAW-PELRTIDIAENPIE 95
            NA       +    P L  + +  N + 
Sbjct: 102 FNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 28  GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTI 87
               +   L  + L+ N +L+ I     V +  L  L +  N   + +      P L+ +
Sbjct: 242 AWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300

Query: 88  DIAENPIE 95
           D++ N + 
Sbjct: 301 DLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 19/141 (13%), Positives = 42/141 (29%), Gaps = 25/141 (17%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
                L  ++++  + L ++    F     LE L ++ N +L  +       +P L  L+
Sbjct: 245 LNYPGLVEVDLSY-NELEKIMYHPFVKMQRLERLYISNN-RLVALNL-YGQPIPTLKVLD 301

Query: 66  LKENAFTSFSESML---------------------AWPELRTIDIAENPIECGCNILWLR 104
           L  N       +                           L+ + ++ N  +C       R
Sbjct: 302 LSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFR 361

Query: 105 EML-VRRNTSAVFCNSPAPLK 124
            +     + +   C     L+
Sbjct: 362 NVARPAVDDADQHCKIDYQLE 382

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
                L  L ++  +NL R+    F    +L+ L L+ N +L  ++   +   P+L+H N
Sbjct: 138 HNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLI---PSLFHAN 192

Query: 66  LKENAFTSFSESMLAWPELRTIDIAENPI 94
           +  N  ++ +        +  +D + N I
Sbjct: 193 VSYNLLSTLAIP----IAVEELDASHNSI 217

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 28/123 (22%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
             +  L+RL I+  + L  +          L+ L L+ N  L  +E +       L +L 
Sbjct: 269 VKMQRLERLYISN-NRLVALN-LYGQPIPTLKVLDLSHN-HLLHVERNQP-QFDRLENLY 324

Query: 66  LKENAFTSFSESMLAWPELRTIDIAENP----------------------IECGCNILWL 103
           L  N+  +   S      L+ + ++ N                         C  +    
Sbjct: 325 LDHNSIVTLKLSTH--HTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLE 382

Query: 104 REM 106
             +
Sbjct: 383 HGL 385

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
                L+ L+++    +  +  GA+    +L TL L  N  ++ +   A  GL +L  L 
Sbjct: 49  FSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENPI 94
             E    S     +     L+ +++A N I
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLI 136

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 7e-09
 Identities = 26/128 (20%), Positives = 40/128 (31%), Gaps = 27/128 (21%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
             L  L  L+I+  ++      G F    +LE L +  N   +    D    L NL  L+
Sbjct: 418 LSLRNLIYLDISH-THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 66  LKENAFTSFSESMLAW-------------------------PELRTIDIAENPIECGCN- 99
           L +      S +                               L+ I +  NP +C C  
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

Query: 100 ILWLREML 107
           I +L   L
Sbjct: 537 IDYLSRWL 544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 9   SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 68
              K L+++  + L  +   +F     L+ L L++  +++ IE+ A   L +L  L L  
Sbjct: 28  FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG 85

Query: 69  NAFTSFSESMLAW-PELRTIDIAENPIE 95
           N   S +    +    L+ +   E  + 
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLA 113

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
           GLS L++L     +NL  +          L+ L +  N        +    L NL HL+L
Sbjct: 98  GLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 67  KENAFTSFSESMLAW-----PELRTIDIAENPIEC 96
             N   S   + L           ++D++ NP+  
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 28  GAFADNLNLETLTLNKNPKLKI-IEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRT 86
            +  D  +LE L L++N          +  G  +L +L+L  N   + S + L   +L  
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400

Query: 87  IDIAENPIE 95
           +D   + ++
Sbjct: 401 LDFQHSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
            G + LK L+++  + +  +    F     LE L    +   ++ E    + L NL +L+
Sbjct: 370 FGTTSLKYLDLSF-NGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENPI 94
           +           +      L  + +A N  
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 8/137 (5%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
            L+ L  L +   + L  + KG F D L +L+ L L  N +LK + E A   L  L  L 
Sbjct: 131 SLTKLTYLSLGY-NELQSLPKGVF-DKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLK 187

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENPIECGCN-ILWLREMLVRRNTSAVF--CNSPA 121
           L  N      E       +L+ + + ENP +C CN I+++ + L ++    +     +  
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGC 247

Query: 122 PLKYKSLISLSAEDLGS 138
               K+++ ++ +D  S
Sbjct: 248 EKGGKAVLEITEKDAAS 264

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
            L+ +   AF     L  L LN N KL+ +       L NL  L + +N   +    +  
Sbjct: 48  KLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106

Query: 81  WP-ELRTIDIAENPIE 95
               L  + +  N ++
Sbjct: 107 QLVNLAELRLDRNQLK 122

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 7   GLSYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
            L  L+ L +T   N L  +  G F   +NL  L L++N +LK +       L  L +L+
Sbjct: 83  ELKNLETLWVT--DNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLS 139

Query: 66  LKENAFTS 73
           L  N   S
Sbjct: 140 LGYNELQS 147

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
            L+ L+ L +   + L  +  G F +  NLETL +  N KL+ +       L NL  L L
Sbjct: 59  RLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRL 116

Query: 67  KENAFTSFSE 76
             N   S   
Sbjct: 117 DRNQLKSLPP 126

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
            +T+V   +     NL  L L+ N  +  ++  +L   P+L  L+L  N        +  
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261

Query: 81  WPELRTIDIAENPIE 95
              ++ + +  N I 
Sbjct: 262 HKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.2 bits (118), Expect = 7e-08
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
            +T ++ G F +  NL TL L  N K+  I   A   L  L  L L +N      E M  
Sbjct: 63  KITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP- 120

Query: 81  WPELRTIDIAENPIE 95
              L+ + + EN I 
Sbjct: 121 -KTLQELRVHENEIT 134

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.2 bits (118), Expect = 7e-08
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNP-KLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 79
            +T+VRK  F     +  + L  NP K   IE  A  G+  L ++ + +   T+  + + 
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP 191

Query: 80  AWPELRTIDIAENPIE 95
             P L  + +  N I 
Sbjct: 192 --PSLTELHLDGNKIT 205

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 6/91 (6%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           K L  L  L +   + ++++  GAFA  + LE L L+KN +LK + E        L  L 
Sbjct: 73  KNLKNLHTLILIN-NKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP---KTLQELR 127

Query: 66  LKENAFTSFSESMLAW-PELRTIDIAENPIE 95
           + EN  T   +S+     ++  +++  NP++
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLK 158

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 10/94 (10%)

Query: 7   GLSYLKRLEITGASN---LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYH 63
           GL+ +  +E+   +N    + +  GAF     L  + +     +  I +      P+L  
Sbjct: 143 GLNQMIVVEL--GTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP---PSLTE 196

Query: 64  LNLKENAFTSFSESMLAW-PELRTIDIAENPIEC 96
           L+L  N  T    + L     L  + ++ N I  
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 15/112 (13%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
            +  +          L  L L  N ++++IE  +L  LP L  L+L  N  +     +  
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD 262

Query: 81  WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLS 132
              L+ + +  N I               +     FC     +K      +S
Sbjct: 263 LKLLQVVYLHTNNI--------------TKVGVNDFCPVGFGVKRAYYNGIS 300

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
           +++ +RK  F    +L  L L  N K+  I E A   L  L  L + +N       ++  
Sbjct: 65  DISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP- 122

Query: 81  WPELRTIDIAENPI 94
              L  + I +N I
Sbjct: 123 -SSLVELRIHDNRI 135

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 16/91 (17%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
             L  L++L I+  ++L  +     +   +L  L ++ N +++ + +    GL N+  + 
Sbjct: 99  SPLRKLQKLYISK-NHLVEIPPNLPS---SLVELRIHDN-RIRKVPKGVFSGLRNMNCIE 153

Query: 66  LKENAFTS--FSESMLAWPELRTIDIAENPI 94
           +  N   +  F        +L  + I+E  +
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 11/95 (11%)

Query: 6   KGLSYLKRLEITGASN---LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLY 62
            GL  +  +E+    N    +    GAF D L L  L +++  KL  I +D       L 
Sbjct: 144 SGLRNMNCIEM--GGNPLENSGFEPGAF-DGLKLNYLRISEA-KLTGIPKDLP---ETLN 196

Query: 63  HLNLKENAFTSFSESMLA-WPELRTIDIAENPIEC 96
            L+L  N   +     L  + +L  + +  N I  
Sbjct: 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 22/123 (17%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKN-----------PKLKIIE-- 51
              S ++ L++   + +  V     A +   LE L L  N            KLK ++  
Sbjct: 141 GCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS 199

Query: 52  -------EDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLR 104
                           +  ++L+ N      +++     L   D+  N   CG    +  
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259

Query: 105 EML 107
           +  
Sbjct: 260 KNQ 262

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 8  LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
           +  K  ++T  S+L +          N++ L L+ N  L  I    L     L  LNL 
Sbjct: 9  GNRYKIEKVTD-SSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLS 66

Query: 68 ENAFTSFSESMLAWPELRTIDIAENPIE 95
           N      + + +   LRT+D+  N ++
Sbjct: 67 SNVLYETLD-LESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 8/90 (8%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           +    +K L+++G + L+++     A    LE L L+ N    + E   L  L  L  L+
Sbjct: 31  QSAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSN---VLYETLDLESLSTLRTLD 86

Query: 66  LKENAFTSFSESMLAWPELRTIDIAENPIE 95
           L  N            P + T+  A N I 
Sbjct: 87  LNNNYVQELLVG----PSIETLHAANNNIS 112

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVG-LPNLYHLNLKENAFTSFSESML 79
            +T +R         ++ L L  N ++  +    L      L HLNL+ N        ++
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189

Query: 80  AWPELRTIDIAENPIE 95
            + +L+T+D++ N + 
Sbjct: 190 -FAKLKTLDLSSNKLA 204

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 23/145 (15%)

Query: 3   KEVKGLSYLKRLEITGASN-LTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPN 60
           KE+    +L  +++  ++N ++ +   +F  N+  L TL L+ N +L+ I      GL +
Sbjct: 48  KELSNYKHLTLIDL--SNNRISTLSNQSF-SNMTQLLTLILSYN-RLRCIPPRTFDGLKS 103

Query: 61  LYHLNLKEN--------AFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVR--R 110
           L  L+L  N        AF   S        L  + I  NP+ C CN+ WL + +    +
Sbjct: 104 LRLLSLHGNDISVVPEGAFNDLSA-------LSHLAIGANPLYCDCNMQWLSDWVKSEYK 156

Query: 111 NTSAVFCNSPAPLKYKSLISLSAED 135
                 C  P  +  K L++  ++ 
Sbjct: 157 EPGIARCAGPGEMADKLLLTTPSKK 181

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 7e-08
 Identities = 21/148 (14%), Positives = 44/148 (29%), Gaps = 25/148 (16%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKN-----------PKLKIIE-- 51
              S ++ L++   + +  V     A +   LE L L  N            KLK ++  
Sbjct: 141 GCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS 199

Query: 52  -------EDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLR 104
                           +  ++L+ N      +++     L   D+  N   CG    +  
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259

Query: 105 EMLVRRNTSAVFCNSPAPLKYKSLISLS 132
           +         V   +   L  ++    +
Sbjct: 260 KNQ---RVQTVAKQTVKKLTGQNEEECT 284

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 8  LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
           +  K  ++T  S+L +          N++ L L+ N  L  I    L     L  LNL 
Sbjct: 9  GNRYKIEKVTD-SSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLS 66

Query: 68 ENAFTSFSESMLAWPELRTIDIAENPIE 95
           N      + + +   LRT+D+  N ++
Sbjct: 67 SNVLYETLD-LESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 8/90 (8%)

Query: 6   KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
           +    +K L+++G + L+++     A    LE L L+ N    + E   L  L  L  L+
Sbjct: 31  QSAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSN---VLYETLDLESLSTLRTLD 86

Query: 66  LKENAFTSFSESMLAWPELRTIDIAENPIE 95
           L  N            P + T+  A N I 
Sbjct: 87  LNNNYVQELLVG----PSIETLHAANNNIS 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVG-LPNLYHLNLKENAFTSFSESML 79
            +T +R         ++ L L  N ++  +    L      L HLNL+ N        ++
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189

Query: 80  AWPELRTIDIAENPIE 95
            + +L+T+D++ N + 
Sbjct: 190 -FAKLKTLDLSSNKLA 204

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 32/121 (26%)

Query: 7   GLSYLKRLEIT---GASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYH 63
            L  +  L ++     + +  ++ GAF   + L+ L L+ N +LK + +     L +L  
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTN-QLKSVPDGIFDRLTSLQK 228

Query: 64  LNLKENAFTSFSESMLAWPELRTIDIAENPIECGCN-ILWLREMLVR---RNTSAVFCNS 119
           + L                         NP +C C  I +L   L +   +   +  C+ 
Sbjct: 229 IWL-----------------------HTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG 265

Query: 120 P 120
            
Sbjct: 266 S 266

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 7   GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
               L+ L+++    +  +  GA+    +L TL L  N  ++ +   A  GL +L  L  
Sbjct: 50  SFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVA 107

Query: 67  KENAFTSFSESMLAWP-ELRTIDIAENPI 94
            E    S     +     L+ +++A N I
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLI 136

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
            L  +   +F     L+ L L++  +++ IE+ A   L +L  L L  N   S +    +
Sbjct: 39  PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 81  -WPELRTIDIAENPI 94
               L+ +   E  +
Sbjct: 98  GLSSLQKLVAVETNL 112

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 6/102 (5%)

Query: 6   KGLSYLKRLEITG------ASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLP 59
              S +  + ++         N  + + G + +   L T+ L  N    + ++     LP
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753

Query: 60  NLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNIL 101
            L ++++  N F+SF    L   +L+   I       G  IL
Sbjct: 754 YLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRIL 795

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 15/105 (14%)

Query: 4   EVKGLSYLKRLEITGASNLTRVRKGAFADN-----LNLETLTLNKNPKLKIIEEDALVGL 58
             K +  +  ++ +  + +    +           +N  T+TL+ N +++    +     
Sbjct: 639 NAKSVYVMGSVDFSY-NKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATG 696

Query: 59  PNLYHLNLKENAFTSFSESMLA--------WPELRTIDIAENPIE 95
             +  + L  N  TS  E+ L            L TID+  N + 
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 37.9 bits (88), Expect = 5e-04
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 5/77 (6%)

Query: 21  NLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 79
           NL      A    +  L  L    N K++ +  +A      L  L L  N      E   
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHN-KVRHL--EAFGTNVKLTDLKLDYNQIEEIPEDFC 615

Query: 80  AW-PELRTIDIAENPIE 95
           A+  ++  +  + N ++
Sbjct: 616 AFTDQVEGLGFSHNKLK 632

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 8/94 (8%)

Query: 3   KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLY 62
             + GL+ L  L+I   S               + ++ L+ N  +  I    L  LP L 
Sbjct: 106 PNLSGLTSLTLLDI-SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELK 162

Query: 63  HLNLKENAFTSFS--ESMLAWPELRTIDIAENPI 94
            LN++ +    +   E     P+L  +      I
Sbjct: 163 SLNIQFDGVHDYRGIEDF---PKLNQLYAFSQTI 193

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.3 bits (96), Expect = 4e-05
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 4   EVKGLSYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNL 61
            +  L  L  +     S+  L  +     A    LE L  + N  L+ ++   +  LP L
Sbjct: 455 VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVDG--VANLPRL 510

Query: 62  YHLNLKENAFTSFSE--SMLAWPELRTIDIAENPI 94
             L L  N     +    +++ P L  +++  N +
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
            ++ +          L  L ++ N +++ ++         L +L+L  N     S     
Sbjct: 32  YISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKISCHPT- 89

Query: 81  WPELRTIDIAENPIEC 96
              L+ +D++ N  + 
Sbjct: 90  -VNLKHLDLSFNAFDA 104

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 6/88 (6%)

Query: 8   LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
           L++  +L    A    ++++     N  L  L          I E  L   P L +L L 
Sbjct: 271 LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAG----ITELDLSQNPKLVYLYLN 326

Query: 68  ENAFTSFSESMLAWPELRTIDIAENPIE 95
               T    S     +L+++      I+
Sbjct: 327 NTELTELDVSHN--TKLKSLSCVNAHIQ 352

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 13/76 (17%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
           +++ +R    +    L  L L+ N +++ ++    +   +L +L++  N   + S   + 
Sbjct: 63  SISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPM- 120

Query: 81  WPELRTIDIAENPIEC 96
              LR +D++ N  + 
Sbjct: 121 -ASLRHLDLSFNDFDV 135

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 3   KEVKGLSYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN 60
            ++ GL +L +LE     N  +T +     +    L+TL+L  N   +I +   L GL  
Sbjct: 122 SDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDN---QISDIVPLAGLTK 176

Query: 61  LYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
           L +L L +N  +     +     L  +++     
Sbjct: 177 LQNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 3   KEVKGLSYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN 60
           K V+G+ YL  +     +   LT ++     +  NL  L L++N   KI +  +L  L  
Sbjct: 56  KSVQGIQYLPNVTKLFLNGNKLTDIK--PLTNLKNLGWLFLDEN---KIKDLSSLKDLKK 110

Query: 61  LYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 95
           L  L+L+ N  +     ++  P+L ++ +  N I 
Sbjct: 111 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKIT 144

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 30  FADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLAWPELRTI 87
           F     L+TL +N N ++  I E     LP+L  L L  N+     +   + +   L  +
Sbjct: 60  FPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 118

Query: 88  DIAENPI 94
            I  NP+
Sbjct: 119 CILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 36.6 bits (85), Expect = 9e-04
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 3   KEVKGLSYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEE-DALVGLP 59
           +++ G   L+RL+    +N  + R+ +G      +L  L L  N  L  + + D L  L 
Sbjct: 55  RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLK 113

Query: 60  NLYHLNLKENAFTSFS---ESMLAW-PELRTID 88
           +L +L +  N  T+       ++   P++R +D
Sbjct: 114 SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 9/106 (8%)

Query: 35  NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
            L+ L ++ N +L  +          L  L++  N  T   ES++      T+++  NP+
Sbjct: 242 ELKELMVSGN-RLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296

Query: 95  E----CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDL 136
                     +                 + AP + ++L   +A+ L
Sbjct: 297 SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 37.3 bits (87), Expect = 9e-04
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 3   KEVKGLSYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN 60
            ++ GL +L +LE     N  +T +     +    L+TL+L  N   +I +   L GL  
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDN---QISDIVPLAGLTK 179

Query: 61  LYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
           L +L L +N  +     +     L  +++     
Sbjct: 180 LQNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC 212

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.95
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.95
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.94
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.94
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.9
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.88
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.85
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.84
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.82
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	99.77
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.76
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.75
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.71
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.7
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.69
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.69
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.67
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.65
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.62
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.61
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.58
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.55
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.55
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.52
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.52
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.5
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.48
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.45
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.45
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.44
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.41
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.41
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.4
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.4
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.4
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.39
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.39
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.39
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.37
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.36
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.36
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.36
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.35
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.34
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.34
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.33
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.31
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.31
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.31
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.3
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.3
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.29
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.28
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.28
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.28
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.27
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.27
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.24
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.21
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.11
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.1
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.1
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.1
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.1
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.1
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.08
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.02
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.96
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.93
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.9
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.89
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.89
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.85
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.75
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.69
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.67
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.65
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.63
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.62
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.56
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.52
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.51
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.44
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.41
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.39
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.37
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.3
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.29
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.25
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.21
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.06
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.06
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.02
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.98
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.88
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.83
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.65
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.62
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.45
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.38
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.03
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.91
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.88
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	95.72
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.26
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	94.18
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.67

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.95  E-value=1.1e-27  Score=164.50  Aligned_cols=141  Identities=27%  Similarity=0.476  Sum_probs=119.3

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLA   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~   80 (150)
                      |.+|.++++|++|++++| .++.+++..|.++++|+.|++++|. +..+++..|..+++|+.|+|++|.++.++.. +..
T Consensus        73 ~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  150 (220)
T 2v9t_B           73 PDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP  150 (220)
T ss_dssp             TTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             HHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence            567888888888888888 8888888888888888888888885 8888888888889999999999999988875 445


Q ss_pred             CCCccEEEccCCCcccccChHHHHHHHhhcC--CCCeeeCCCccccCccccccccccCCCCCcccc
Q psy16571         81 WPELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDLGSRVRALF  144 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~--~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~~~~  144 (150)
                      +++|+.|++++|+|.|+|++.|+..|+....  ...+.|.+|..++|+.+.+++.+++.|..++..
T Consensus       151 l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~c~~~~~~  216 (220)
T 2v9t_B          151 LRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRCSAAAHH  216 (220)
T ss_dssp             CTTCCEEECCSSCEECSGGGHHHHHHHHHCCCBCSCCBEEESGGGTTCBGGGSCGGGCCC------
T ss_pred             CCCCCEEEeCCCCcCCCCccHHHHHHHHhCCCCccCCCcCCchHHcCCchhhCCHHHCcCcccccc
Confidence            8999999999999999999999999988764  567899999999999999999999999887654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.2e-27  Score=159.22  Aligned_cols=139  Identities=22%  Similarity=0.427  Sum_probs=125.4

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-C
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-A   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~   80 (150)
                      |..|.++.+|+.|++++| .++.+++.+|.++++|+.|++++|. ++.+++..|..+++|+.|+|++|.++.+|...+ .
T Consensus        47 p~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~  124 (193)
T 2wfh_A           47 PKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND  124 (193)
T ss_dssp             CGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred             HHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhc
Confidence            567889999999999999 9999999999999999999999996 999999999999999999999999999988654 5


Q ss_pred             CCCccEEEccCCCcccccChHHHHHHHhhcC--CCCeeeCCCccccCccccccccccCCCCCcc
Q psy16571         81 WPELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDLGSRVRA  142 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~--~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~~  142 (150)
                      +++|+.|++++|+|.|||++.|+..|.....  ...+.|++|..++|+.+.+++..++.|....
T Consensus       125 l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~~~~~~  188 (193)
T 2wfh_A          125 LSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTCAAAH  188 (193)
T ss_dssp             CTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESGGGTTCBTTTSCGGGCCC----
T ss_pred             CccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCchHHCCCCcccCChHHeeehhhc
Confidence            8999999999999999999999999998764  4568999999999999999999999887653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.94  E-value=5.8e-26  Score=152.85  Aligned_cols=139  Identities=24%  Similarity=0.458  Sum_probs=125.1

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcccc-CcCcCCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF-SESMLAWP   82 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~l-p~~~~~~~   82 (150)
                      .|.++++|++|++++| .++.+.+..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.++.+ |..+..++
T Consensus        49 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  126 (192)
T 1w8a_A           49 LFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN  126 (192)
T ss_dssp             SGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT
T ss_pred             ccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC
Confidence            4889999999999999 9999988899999999999999996 9999998899999999999999999977 45566689


Q ss_pred             CccEEEccCCCcccccChHHHHHHHhhcC--CCCeeeCCCccccCccccccccccCCCCCcccc
Q psy16571         83 ELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDLGSRVRALF  144 (150)
Q Consensus        83 ~L~~L~l~~N~~~c~c~~~~l~~~~~~~~--~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~~~~  144 (150)
                      +|+.|++++|+|.|+|.+.|+..|++...  .....|..|..++|+.+.++..+++.|..+...
T Consensus       127 ~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l~~~~l~~l~~~~~~C~~~~~~  190 (192)
T 1w8a_A          127 SLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSENSE  190 (192)
T ss_dssp             TCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTTCCCCCC---
T ss_pred             CCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHHcCCChhhCcHhhcCcCCCCCC
Confidence            99999999999999999999999998764  566899999999999999999999999987653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.94  E-value=8.6e-26  Score=155.02  Aligned_cols=140  Identities=25%  Similarity=0.433  Sum_probs=119.0

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcccc-CcCcCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF-SESMLA   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~l-p~~~~~   80 (150)
                      +.+|.++.+|++|++++| .++.+++..|..+++|+.|++++|. +..+++..|..+++|+.|+|++|.++.+ |..+..
T Consensus        74 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  151 (220)
T 2v70_A           74 EGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT  151 (220)
T ss_dssp             TTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred             HHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence            346788888888888888 8888888788888888888888885 8888888888889999999999999987 445566


Q ss_pred             CCCccEEEccCCCcccccChHHHHHHHhhcC--CCCeeeCCCccccCccccccccccCCCCCccc
Q psy16571         81 WPELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDLGSRVRAL  143 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~--~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~~~  143 (150)
                      +++|+.|++++|+|.|+|.+.|+..|.....  .....|..|..++|+++.++...++.|..+..
T Consensus       152 l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~~~~~~~  216 (220)
T 2v70_A          152 LHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCDDAHH  216 (220)
T ss_dssp             CTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEESGGGTTEEGGGSCGGGCCCCC---
T ss_pred             CCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCccCCChHHCCCChhhCCHHHcccccccc
Confidence            8999999999999999999999999998764  56789999999999999999999998887543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.93  E-value=2.1e-25  Score=171.96  Aligned_cols=136  Identities=16%  Similarity=0.284  Sum_probs=120.0

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-C
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-A   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~   80 (150)
                      |..|..+++|++|++++| .++.+++..|.++++|+.|++++|+ ++.+++..|..+++|+.|+|++|.|+.+++..+ .
T Consensus       487 ~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  564 (635)
T 4g8a_A          487 PDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH  564 (635)
T ss_dssp             CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred             chhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh
Confidence            567899999999999999 9999999999999999999999996 999999999999999999999999998876544 4


Q ss_pred             C-CCccEEEccCCCcccccChHHHHHHHhhcC-----CCCeeeCCCccccCccccccccccCCCCCcc
Q psy16571         81 W-PELRTIDIAENPIECGCNILWLREMLVRRN-----TSAVFCNSPAPLKYKSLISLSAEDLGSRVRA  142 (150)
Q Consensus        81 ~-~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~-----~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~~  142 (150)
                      + ++|+.|++++|||.|||++.||.+|++...     ..+++|++|..++|+++.++   ++.|...+
T Consensus       565 l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~---~~~C~~~g  629 (635)
T 4g8a_A          565 FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL---NITCQMTG  629 (635)
T ss_dssp             CCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGC---CCCC----
T ss_pred             hhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeee---ccCCCCCC
Confidence            5 689999999999999999999999998753     45789999999999999999   46797543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=6.5e-24  Score=158.66  Aligned_cols=139  Identities=25%  Similarity=0.488  Sum_probs=115.9

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-CCCC
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-AWPE   83 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~~~~   83 (150)
                      +..+.+|+.|++++| .++.+++..|..+++|+.|++++|. +..+++..|..+++|+.|+|++|.++.+|...+ .+++
T Consensus       203 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  280 (440)
T 3zyj_A          203 LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH  280 (440)
T ss_dssp             CTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred             cCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence            455667777788887 8888877888888899999999885 888888888899999999999999999887655 4899


Q ss_pred             ccEEEccCCCcccccChHHHHHHHhhcC----CCCeeeCCCccccCccccccccccCCCCCccccc
Q psy16571         84 LRTIDIAENPIECGCNILWLREMLVRRN----TSAVFCNSPAPLKYKSLISLSAEDLGSRVRALFI  145 (150)
Q Consensus        84 L~~L~l~~N~~~c~c~~~~l~~~~~~~~----~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~~~~~  145 (150)
                      |+.|++++|+|.|||++.|+..|.+...    .....|++|..++|+.+.+++...+.|..|.+..
T Consensus       281 L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~C~~P~i~~  346 (440)
T 3zyj_A          281 LERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVE  346 (440)
T ss_dssp             CCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC----CCSCCCCCCEEE
T ss_pred             CCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhHhhhhhccCCCCcccc
Confidence            9999999999999999999999998753    3458999999999999999999999998776543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.90  E-value=2.8e-23  Score=155.67  Aligned_cols=139  Identities=25%  Similarity=0.469  Sum_probs=119.3

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-CCCC
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-AWPE   83 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~~~~   83 (150)
                      +..+.+|+.|++++| .++.+++..|..+++|+.|++++|. +..+.+..|..+++|+.|+|++|.++.+|...+ .+++
T Consensus       214 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  291 (452)
T 3zyi_A          214 LTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY  291 (452)
T ss_dssp             CTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred             ccccccccEEECcCC-cCcccCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence            455667777788887 7888877888888999999999885 888888888899999999999999999887655 4899


Q ss_pred             ccEEEccCCCcccccChHHHHHHHhhcC----CCCeeeCCCccccCccccccccccCCCCCccccc
Q psy16571         84 LRTIDIAENPIECGCNILWLREMLVRRN----TSAVFCNSPAPLKYKSLISLSAEDLGSRVRALFI  145 (150)
Q Consensus        84 L~~L~l~~N~~~c~c~~~~l~~~~~~~~----~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~~~~~  145 (150)
                      |+.|++++|+|.|||++.|+..|++...    .....|++|..++|+.+.+++...+.|..|.+..
T Consensus       292 L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~C~~P~i~~  357 (452)
T 3zyi_A          292 LVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMD  357 (452)
T ss_dssp             CCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCBEEESTTTTTCBTTSCCGGGCCCCCCCCSB
T ss_pred             CCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcEeCCchHhccchhhccchhhhcccCccccc
Confidence            9999999999999999999999998753    3457999999999999999999999998775543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.88  E-value=8.5e-22  Score=142.98  Aligned_cols=134  Identities=25%  Similarity=0.386  Sum_probs=114.7

Q ss_pred             CccccCccccceeccCC-CcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC
Q psy16571          2 EKEVKGLSYLKRLEITG-ASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~-n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~   80 (150)
                      |. +..+.+|+.|+|++ | .++.+++..|.++++|+.|+|++|. ++.+++..|..+++|+.|+|++|.|+.+|..++.
T Consensus        25 p~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  101 (347)
T 2ifg_A           25 HH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ  101 (347)
T ss_dssp             TT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred             CC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence            45 78888999999996 8 9999999999999999999999996 9999999999999999999999999999998877


Q ss_pred             CCCccEEEccCCCcccccChHHHHHHHhhcC----CCCeeeCCCccccCccccccccccCCCCCccccc
Q psy16571         81 WPELRTIDIAENPIECGCNILWLREMLVRRN----TSAVFCNSPAPLKYKSLISLSAEDLGSRVRALFI  145 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~----~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~~~~~  145 (150)
                      ...|+.|++.+|+|.|+|.+.||..|.....    ...+.|..|..+..     +.  ...|..|.+..
T Consensus       102 ~~~L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~l~~-----l~--~~~c~~P~i~~  163 (347)
T 2ifg_A          102 GLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAH-----MP--NASCGVPTLKV  163 (347)
T ss_dssp             SCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSC-----CC--CTTCCCCEEEE
T ss_pred             cCCceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCChHHhc-----CC--cccCCCCceec
Confidence            5569999999999999999999999998653    46789998874433     32  24576665543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.88  E-value=4.8e-22  Score=140.76  Aligned_cols=134  Identities=25%  Similarity=0.384  Sum_probs=107.9

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWP   82 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~~   82 (150)
                      .|.++++|++|++++| .++.+++..|..+++|+.+++++|. +..+.+..|..+++|+.|++++|.++.++.. +..++
T Consensus       148 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  225 (285)
T 1ozn_A          148 TFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR  225 (285)
T ss_dssp             TTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             HhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence            4666777777777777 7777776667777777777777775 7777666677778888888888888877654 55688


Q ss_pred             CccEEEccCCCcccccChHHHHHHHhhcC--CCCeeeCCCccccCccccccccccCC-CC
Q psy16571         83 ELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDLG-SR  139 (150)
Q Consensus        83 ~L~~L~l~~N~~~c~c~~~~l~~~~~~~~--~~~~~C~~~~~l~~~~~~~~~~~~~~-C~  139 (150)
                      +|+.|++++|+|.|+|.+.|+..|++...  ...+.|..|..++|+.+.++...++. |.
T Consensus       226 ~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~  285 (285)
T 1ozn_A          226 ALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA  285 (285)
T ss_dssp             TCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred             ccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence            99999999999999999999999998875  57789999999999999999988885 63

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.87  E-value=3.2e-21  Score=127.34  Aligned_cols=122  Identities=20%  Similarity=0.400  Sum_probs=106.9

Q ss_pred             cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCCCCccEE
Q psy16571          9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTI   87 (150)
Q Consensus         9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~~~L~~L   87 (150)
                      ..|+.|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.|+.+|.. +..+++|+.|
T Consensus        30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  107 (170)
T 3g39_A           30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI  107 (170)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEE
Confidence            67899999999 9999999899999999999999996 9999999899999999999999999999886 4568999999


Q ss_pred             EccCCCcccccC-hHHHHHHHhhcC----------CCCeeeCCCccccCccccccccccC
Q psy16571         88 DIAENPIECGCN-ILWLREMLVRRN----------TSAVFCNSPAPLKYKSLISLSAEDL  136 (150)
Q Consensus        88 ~l~~N~~~c~c~-~~~l~~~~~~~~----------~~~~~C~~~~~l~~~~~~~~~~~~~  136 (150)
                      ++++|+|.|+|. +.|+..|+....          ...+.|..+    |+++..+....+
T Consensus       108 ~L~~N~~~c~c~~l~~l~~~l~~~~~~~~~~~~~~~~~~~C~~~----~~~~~~~~~~~~  163 (170)
T 3g39_A          108 WLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARCSGT----NTPVRAVTEAST  163 (170)
T ss_dssp             ECCSSCBCTTBGGGHHHHHHHHHCGGGEECSSSBCGGGSBBCC-----CCBGGGCCSTTC
T ss_pred             EeCCCCCCCCchhHHHHHHHHHhCcceeeccccCCcccceeCCC----Cccchhcccccc
Confidence            999999999995 999999998752          356788775    677777765554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=3.2e-21  Score=137.25  Aligned_cols=107  Identities=29%  Similarity=0.442  Sum_probs=95.5

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW   81 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~   81 (150)
                      +..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.++.+|..++..
T Consensus       117 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~  194 (290)
T 1p9a_G          117 LGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS  194 (290)
T ss_dssp             SSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             HHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcCCccChhhccc
Confidence            456888888889999888 8888888888888899999999885 88888888888899999999999999999988888


Q ss_pred             CCccEEEccCCCcccccChHHHHHHHhhc
Q psy16571         82 PELRTIDIAENPIECGCNILWLREMLVRR  110 (150)
Q Consensus        82 ~~L~~L~l~~N~~~c~c~~~~l~~~~~~~  110 (150)
                      .+|+.+++.+|+|.|+|++.|+..|+++.
T Consensus       195 ~~L~~l~L~~Np~~C~c~~~~l~~wl~~~  223 (290)
T 1p9a_G          195 HLLPFAFLHGNPWLCNCEILYFRRWLQDN  223 (290)
T ss_dssp             CCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred             ccCCeEEeCCCCccCcCccHHHHHHHHhC
Confidence            89999999999999999999999999864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.86  E-value=1.6e-20  Score=124.43  Aligned_cols=122  Identities=23%  Similarity=0.431  Sum_probs=104.6

Q ss_pred             cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCCCCccEE
Q psy16571          9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTI   87 (150)
Q Consensus         9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~~~L~~L   87 (150)
                      ..|+.|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.|+.+|.. +..+++|+.|
T Consensus        33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  110 (174)
T 2r9u_A           33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI  110 (174)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred             CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEE
Confidence            68999999999 9999999899999999999999996 9999998889999999999999999999887 5568999999


Q ss_pred             EccCCCcccccC-hHHHHHHHhhcC-------------CCCeeeCCCccccCccccccccccC
Q psy16571         88 DIAENPIECGCN-ILWLREMLVRRN-------------TSAVFCNSPAPLKYKSLISLSAEDL  136 (150)
Q Consensus        88 ~l~~N~~~c~c~-~~~l~~~~~~~~-------------~~~~~C~~~~~l~~~~~~~~~~~~~  136 (150)
                      ++++|+|.|+|. +.|+..|+....             ...+.|+.+    |.++..++...+
T Consensus       111 ~L~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~----~~~~~~~~~~~~  169 (174)
T 2r9u_A          111 YLYNNPWDCECRDIMYLRNWVADHTSIVMRWDGKAVNDPDSAKCAGT----NTPVRAVTEAST  169 (174)
T ss_dssp             ECCSSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECGGGSBBTTT----CCBGGGCCGGGC
T ss_pred             EeCCCCcccccccHHHHHHHHHhcccccccccccccCCcccCEECCC----Cccceecccccc
Confidence            999999999996 899999987642             245667664    455666654444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.85  E-value=1.1e-20  Score=134.96  Aligned_cols=129  Identities=16%  Similarity=0.281  Sum_probs=112.5

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc-CcCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLA   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~-~~~~   80 (150)
                      |..|.++++|++|++++| .++.+++..|..+++|+.|++++|. +..+++..|..+++|+.|++++|.+...+. .+..
T Consensus       168 ~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  245 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH  245 (306)
T ss_dssp             CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred             hhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence            566888899999999999 9999888889999999999999996 998888778889999999999999986544 5555


Q ss_pred             C-CCccEEEccCCCcccccChHHHHHHHhhcC-----CCCeeeCCCccccCccccccc
Q psy16571         81 W-PELRTIDIAENPIECGCNILWLREMLVRRN-----TSAVFCNSPAPLKYKSLISLS  132 (150)
Q Consensus        81 ~-~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~-----~~~~~C~~~~~l~~~~~~~~~  132 (150)
                      + ++|+.|++++|+|.|+|.+.|+.+|++...     ...+.|+.|..++|+++.++.
T Consensus       246 ~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~  303 (306)
T 2z66_A          246 FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN  303 (306)
T ss_dssp             CCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGGGCC
T ss_pred             hhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCceeeeec
Confidence            6 489999999999999999999999997652     567999999999999998883

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.85  E-value=4.5e-20  Score=129.87  Aligned_cols=134  Identities=25%  Similarity=0.439  Sum_probs=109.1

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-C
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-A   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~   80 (150)
                      +..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.+|...+ .
T Consensus       126 ~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  203 (270)
T 2o6q_A          126 PRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS  203 (270)
T ss_dssp             TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             HHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence            345778888888888888 8888888778888899999999885 888888888889999999999999998887644 4


Q ss_pred             CCCccEEEccCCCcccccC-hHHHHHHHhhcC------CCCeeeCCCccccCcccccccccc--CCCCCc
Q psy16571         81 WPELRTIDIAENPIECGCN-ILWLREMLVRRN------TSAVFCNSPAPLKYKSLISLSAED--LGSRVR  141 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c~c~-~~~l~~~~~~~~------~~~~~C~~~~~l~~~~~~~~~~~~--~~C~~~  141 (150)
                      +++|+.|++++|+|.|+|. +.|+..|+....      .....|+.    .|+.+.++...+  ..|..|
T Consensus       204 l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~~~~~~~~~~~~~~C~~----~~~~~~~~~~~~~~~~C~~p  269 (270)
T 2o6q_A          204 LEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEK----GGKAVLEITEKDAASDCVSP  269 (270)
T ss_dssp             CTTCCEEECCSSCBCCSSSSSHHHHHHHHHHHHTTCSSTTCCBBSS----SCSBGGGCCTTTTCSCCCSC
T ss_pred             ccCCCEEEecCCCeeCCCccHHHHHHHHHhhccccccCccccccCC----CCeEeEEecchhhcccCCCC
Confidence            8999999999999999998 678888876542      45578865    377888887766  478765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.84  E-value=3.4e-22  Score=156.03  Aligned_cols=136  Identities=23%  Similarity=0.424  Sum_probs=86.3

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC--CCC
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML--AWP   82 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~--~~~   82 (150)
                      |.++++|+.|++++| .++.+++..|.++++|+.+++++|. ++.+++..|..+++|+.|++++|.++.++...+  .++
T Consensus       532 ~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  609 (680)
T 1ziw_A          532 LKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR  609 (680)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHT
T ss_pred             hcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccc
Confidence            677778888888888 8888887778888888888888885 888888878888888888888888888776544  368


Q ss_pred             CccEEEccCCCcccccCh-HHHHHHHhhcC------CCCeeeCCCccccCccccccccccCCCCCcc
Q psy16571         83 ELRTIDIAENPIECGCNI-LWLREMLVRRN------TSAVFCNSPAPLKYKSLISLSAEDLGSRVRA  142 (150)
Q Consensus        83 ~L~~L~l~~N~~~c~c~~-~~l~~~~~~~~------~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~~  142 (150)
                      +|+.+++++|+|.|+|++ .||..|.....      ..+++|++|..++|+++.++++....|.++.
T Consensus       610 ~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~~  676 (680)
T 1ziw_A          610 NLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSAHH  676 (680)
T ss_dssp             TCSEEECTTCCCCBCCCCCSSEECCSSCC--------------------------------------
T ss_pred             ccCEEEccCCCcccCCccHHHHHHHHHhcCcccccccCCcEECCchHHCCCcccccChhhcCCCccC
Confidence            899999999999999996 89988876542      3568999999999999999998888766543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=4.3e-20  Score=127.27  Aligned_cols=125  Identities=21%  Similarity=0.376  Sum_probs=79.9

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCCCC
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPE   83 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~~~   83 (150)
                      |.++++|+.|++++| .++.+++..|..+++|+.|++++|. ++.++.. +..+++|+.|+|++|.++.++.. +..+++
T Consensus        84 ~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  160 (229)
T 3e6j_A           84 FDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSS  160 (229)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCccCHHHHhCCCC
Confidence            444445555555554 5555544444445555555555553 5444332 34556666666666666666654 334789


Q ss_pred             ccEEEccCCCcccccC-hHHHHHHHhhc-------------CCCCeeeCCCccccCccccccccccC
Q psy16571         84 LRTIDIAENPIECGCN-ILWLREMLVRR-------------NTSAVFCNSPAPLKYKSLISLSAEDL  136 (150)
Q Consensus        84 L~~L~l~~N~~~c~c~-~~~l~~~~~~~-------------~~~~~~C~~~~~l~~~~~~~~~~~~~  136 (150)
                      |+.|++.+|+|.|+|. +.|+..|+...             +.....|+.+    |+++..+....+
T Consensus       161 L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~v~~~~~~~C~~~----~~~~~~~~~~~~  223 (229)
T 3e6j_A          161 LTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGT----NTPVRAVTEAST  223 (229)
T ss_dssp             CCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECTTCSBBTTT----CCBGGGCCGGGC
T ss_pred             CCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCcccCCCCcCccCCC----Cccceecccccc
Confidence            9999999999999995 89999999764             2456788876    567777766665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.84  E-value=4.2e-21  Score=148.07  Aligned_cols=134  Identities=15%  Similarity=0.292  Sum_probs=104.5

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW   81 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~   81 (150)
                      |..|.++++|+.|++++| .++.+++..|..+++|+.|++++|. +..+.+..|..+++|+.|++++|.++.+|..+..+
T Consensus       466 ~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l  543 (606)
T 3vq2_A          466 SNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF  543 (606)
T ss_dssp             CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGS
T ss_pred             HHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhh
Confidence            567889999999999999 9999988889999999999999996 99998888999999999999999999999987777


Q ss_pred             C-CccEEEccCCCcccccChHHHHHHHhhcC-----CCCeeeCCCccccCccccccccccCCCC
Q psy16571         82 P-ELRTIDIAENPIECGCNILWLREMLVRRN-----TSAVFCNSPAPLKYKSLISLSAEDLGSR  139 (150)
Q Consensus        82 ~-~L~~L~l~~N~~~c~c~~~~l~~~~~~~~-----~~~~~C~~~~~l~~~~~~~~~~~~~~C~  139 (150)
                      + +|+.|++++|+|.|+|.+.|+.+|++...     ...+.|..|..++|+++.++...  .|.
T Consensus       544 ~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~--~c~  605 (606)
T 3vq2_A          544 PKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNS--TCY  605 (606)
T ss_dssp             CTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSBSSGGGCCCC---------------------
T ss_pred             cccCcEEEccCCCcccCCccHHHHHHHHcCcccccCCccceeCCChHhCCCEeeecccc--cCC
Confidence            6 69999999999999999999999987652     46789999999999999998755  364

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.84  E-value=4.5e-21  Score=144.34  Aligned_cols=140  Identities=24%  Similarity=0.416  Sum_probs=121.4

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-CC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-AW   81 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~~   81 (150)
                      ..|.++++|+.|++++| .++.+++..|..+++|+.|++++|. +..+.+..|..+++|+.|+|++|.++.++...+ .+
T Consensus       242 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  319 (477)
T 2id5_A          242 LAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV  319 (477)
T ss_dssp             HHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred             HHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence            35778899999999999 9999999899999999999999996 999998899999999999999999999988654 58


Q ss_pred             CCccEEEccCCCcccccChHHHHHHHhhc--CCCCeeeCCCccccCcccccccc----ccCCCCCcccc
Q psy16571         82 PELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSPAPLKYKSLISLSA----EDLGSRVRALF  144 (150)
Q Consensus        82 ~~L~~L~l~~N~~~c~c~~~~l~~~~~~~--~~~~~~C~~~~~l~~~~~~~~~~----~~~~C~~~~~~  144 (150)
                      ++|+.|++++|+|.|+|.+.|+.++....  ......|..|..++|+.+.++..    +.+.|..|.+.
T Consensus       320 ~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~C~~P~i~  388 (477)
T 2id5_A          320 GNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIR  388 (477)
T ss_dssp             GGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGGGTTCBGGGSCSSCCTTSSCCEEEEES
T ss_pred             cccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCchHHcCCchhhCccccccceeEecccccc
Confidence            89999999999999999999998876543  35678999999999999987753    35778765543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=1.6e-19  Score=125.83  Aligned_cols=107  Identities=29%  Similarity=0.444  Sum_probs=90.7

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLA   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~   80 (150)
                      +..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.++.++.. +..
T Consensus       100 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  177 (251)
T 3m19_A          100 LGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR  177 (251)
T ss_dssp             TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             hhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhC
Confidence            345677788888888888 8888887778888888888888885 8888887788889999999999999988774 445


Q ss_pred             CCCccEEEccCCCcccc-cChHHHHHHHhhc
Q psy16571         81 WPELRTIDIAENPIECG-CNILWLREMLVRR  110 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c~-c~~~~l~~~~~~~  110 (150)
                      +++|+.|++++|+|.|+ |++.|+..|....
T Consensus       178 l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~  208 (251)
T 3m19_A          178 LGKLQTITLFGNQFDCSRCEILYLSQWIREN  208 (251)
T ss_dssp             CTTCCEEECCSCCBCTTSTTHHHHHHHHHHS
T ss_pred             CCCCCEEEeeCCceeCCccccHHHHHHHHhc
Confidence            88999999999999999 9999999999754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.82  E-value=1.5e-19  Score=119.78  Aligned_cols=124  Identities=23%  Similarity=0.404  Sum_probs=107.5

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-C
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-A   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~   80 (150)
                      +..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.+|...+ .
T Consensus        45 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  122 (177)
T 2o6r_A           45 HGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR  122 (177)
T ss_dssp             TTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             HHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcC
Confidence            345788999999999999 9999998889999999999999996 999998888899999999999999999988764 4


Q ss_pred             CCCccEEEccCCCcccccC-hHHHHHHHhhcC---CCCeeeCCCccccCcccccc
Q psy16571         81 WPELRTIDIAENPIECGCN-ILWLREMLVRRN---TSAVFCNSPAPLKYKSLISL  131 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c~c~-~~~l~~~~~~~~---~~~~~C~~~~~l~~~~~~~~  131 (150)
                      +++|+.|++++|+|.|+|. +.|+..|.....   .....|..+    |+++.++
T Consensus       123 l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~~C~~~----~~~~~~i  173 (177)
T 2o6r_A          123 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS----GKPVRSI  173 (177)
T ss_dssp             CTTCCEEECCSSCBCCCHHHHHHHHHHHHHTGGGEESCCBBTTT----CCBGGGC
T ss_pred             CcccCEEEecCCCeeccCccHHHHHHHHhhCccccccCcEeCCC----Cccccee
Confidence            8999999999999999998 789999987664   466788764    4555444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.81  E-value=4.6e-20  Score=142.28  Aligned_cols=127  Identities=24%  Similarity=0.413  Sum_probs=107.4

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAW   81 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~   81 (150)
                      ..|.++++|+.|++++| .++.+++..|..+++|+.+++++|. +..+.+..|..++.| .+++++|.++.+++. +..+
T Consensus       470 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l  546 (606)
T 3t6q_A          470 NSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNR-LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL  546 (606)
T ss_dssp             CGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHH
T ss_pred             hhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCCc-cCcCChhHhCccccc-EEECcCCcccccCHhhcccC
Confidence            35677788888888888 8888877788888888888888885 888888888888888 888888888877654 3447


Q ss_pred             CCccEEEccCCCcccccChHHHHHHHhhc-----CCCCeeeCCCccccCccccccc
Q psy16571         82 PELRTIDIAENPIECGCNILWLREMLVRR-----NTSAVFCNSPAPLKYKSLISLS  132 (150)
Q Consensus        82 ~~L~~L~l~~N~~~c~c~~~~l~~~~~~~-----~~~~~~C~~~~~l~~~~~~~~~  132 (150)
                      ++|+.+++++|+|.|+|.+.|+..|++..     ....+.|.+|..++|+++.+++
T Consensus       547 ~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~  602 (606)
T 3t6q_A          547 SQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVT  602 (606)
T ss_dssp             HTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGGGCBEEESGGGTTCBGGGCC
T ss_pred             CCCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCCCCeeCCchHhCCCeeeeee
Confidence            88999999999999999999999999864     2567899999999999999984

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=4.1e-19  Score=129.74  Aligned_cols=133  Identities=21%  Similarity=0.422  Sum_probs=95.0

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC--
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML--   79 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~--   79 (150)
                      +.+|.++++|++|++++| .++.+++..|..+++|+.|++++|. +..+++..|..+++|+.|+|++|.|+.+|..++  
T Consensus        81 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~  158 (361)
T 2xot_A           81 SEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD  158 (361)
T ss_dssp             TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-
T ss_pred             hhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcC
Confidence            346777777788888877 7777777777777778888887775 777777777777888888888888777776543  


Q ss_pred             --CCCC--------------------------ccEEEccCCCcccccChHHH-HHHHhhcC------CCCeeeCCCcccc
Q psy16571         80 --AWPE--------------------------LRTIDIAENPIECGCNILWL-REMLVRRN------TSAVFCNSPAPLK  124 (150)
Q Consensus        80 --~~~~--------------------------L~~L~l~~N~~~c~c~~~~l-~~~~~~~~------~~~~~C~~~~~l~  124 (150)
                        .+++                          ++.|++.+|+|.|||++.|+ ..|..+..      ...+.|..|..+.
T Consensus       159 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~  238 (361)
T 2xot_A          159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLH  238 (361)
T ss_dssp             ---CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHTTCHHHHTTGGGCEEESSSCCE
T ss_pred             cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHhcCCchhccCcCCEeCCChHHc
Confidence              1222                          25688899999999999885 66775432      3578999997765


Q ss_pred             CccccccccccCCCCC
Q psy16571        125 YKSLISLSAEDLGSRV  140 (150)
Q Consensus       125 ~~~~~~~~~~~~~C~~  140 (150)
                      +  +..+  ..+.|..
T Consensus       239 ~--~~~~--~~~~C~~  250 (361)
T 2xot_A          239 N--IFSL--DFFNCSE  250 (361)
T ss_dssp             E--GGGC--CCTTCCS
T ss_pred             C--cccc--ccccCCC
Confidence            4  2233  2566754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=99.77  E-value=5.9e-19  Score=111.67  Aligned_cols=102  Identities=24%  Similarity=0.376  Sum_probs=83.2

Q ss_pred             CEEeCCCCCCCC--ccchhhcCCCCCCCeEecCCCCccccCcCcCC-CCCccEEEccCCCcccccChHHHHHHHhhcC--
Q psy16571         37 ETLTLNKNPKLK--IIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRRN--  111 (150)
Q Consensus        37 ~~l~l~~n~~l~--~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~-~~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~--  111 (150)
                      ..++.+++. ++  .++..   -..+|+.|+|++|.|+.+|..++. +++|+.|+|.+|||.|||++.||..|+....  
T Consensus        11 ~~v~Cs~~~-L~~~~vP~~---lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~   86 (130)
T 3rfe_A           11 TLVDCGRRG-LTWASLPTA---FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPER   86 (130)
T ss_dssp             TEEECCSSC-CCTTTSCSC---CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCS
T ss_pred             CEEEeCCCC-CccccCCCC---CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCccc
Confidence            366777774 77  67643   135688999999999999887665 7899999999999999999999999998763  


Q ss_pred             --CCCeeeCCCccccCccccccccccCC--CCCcc
Q psy16571        112 --TSAVFCNSPAPLKYKSLISLSAEDLG--SRVRA  142 (150)
Q Consensus       112 --~~~~~C~~~~~l~~~~~~~~~~~~~~--C~~~~  142 (150)
                        ..+++|++|..++|+.+.++..+++.  |....
T Consensus        87 ~~~~~~~C~~P~~l~g~~l~~l~~~~l~c~C~~~~  121 (130)
T 3rfe_A           87 APYRDLRCVAPPALRGRLLPYLAEDELRAACAPGP  121 (130)
T ss_dssp             GGGTTCBCCBSTTTTTCBGGGCCHHHHHHTTCC--
T ss_pred             ccccCcEeCcChHHcCCCcccCCHHHhhCcCCCCc
Confidence              46799999999999999999998886  55443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.76  E-value=5.4e-19  Score=141.27  Aligned_cols=131  Identities=27%  Similarity=0.436  Sum_probs=109.8

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWP   82 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~   82 (150)
                      ..|.++++|+.|++++| .++.+++..|.++++|+.|++++|. ++.+++..+.  ++|+.|++++|.++.+++..+  .
T Consensus       474 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~--~  547 (844)
T 3j0a_A          474 DVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSNR-LTVLSHNDLP--ANLEILDISRNQLLAPNPDVF--V  547 (844)
T ss_dssp             SCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESCC-CSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC--S
T ss_pred             hhhcCcccccEEECCCC-cccccChhHccchhhhheeECCCCC-CCccChhhhh--ccccEEECCCCcCCCCChhHh--C
Confidence            45788889999999999 9999998889999999999999996 9988887665  789999999999998776554  4


Q ss_pred             CccEEEccCCCcccccChHHHHHHHhhcC------CCCeeeCCCccccCccccccccccCCCCCc
Q psy16571         83 ELRTIDIAENPIECGCNILWLREMLVRRN------TSAVFCNSPAPLKYKSLISLSAEDLGSRVR  141 (150)
Q Consensus        83 ~L~~L~l~~N~~~c~c~~~~l~~~~~~~~------~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~  141 (150)
                      +++.+++++|+|.|+|++.|+..|.....      ...+.|.+|..++|.++.++...  .|..+
T Consensus       548 ~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~--~C~~~  610 (844)
T 3j0a_A          548 SLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE--GCDEE  610 (844)
T ss_dssp             SCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCC--CC---
T ss_pred             CcCEEEecCCCcccccccHHHHHHHHhcCcccccccccCccCCchhhCCCccccCccc--cCCch
Confidence            89999999999999999999999987653      35689999999999999888653  58653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.75  E-value=9.1e-18  Score=125.42  Aligned_cols=117  Identities=26%  Similarity=0.490  Sum_probs=100.8

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-C
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-A   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~   80 (150)
                      |..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+.+..|..+++|+.|++++|.++.+|...+ .
T Consensus       316 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  393 (455)
T 3v47_A          316 DNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR  393 (455)
T ss_dssp             TTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             hhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCccccCCHhHhcc
Confidence            557888888999999998 8888888888889999999999996 888888888899999999999999999887654 5


Q ss_pred             CCCccEEEccCCCcccccC-hHHHHHHHhhcC---CCCeeeCCC
Q psy16571         81 WPELRTIDIAENPIECGCN-ILWLREMLVRRN---TSAVFCNSP  120 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c~c~-~~~l~~~~~~~~---~~~~~C~~~  120 (150)
                      +++|+.|++++|++.|+|. +.|+..|.....   .....|..+
T Consensus       394 l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~~~~~~c~~~  437 (455)
T 3v47_A          394 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS  437 (455)
T ss_dssp             CTTCCEEECCSSCBCCCTTTTHHHHHHHHHTTTTEESCCBBTTT
T ss_pred             CCcccEEEccCCCcccCCCcchHHHHHHHhCccceeeeeeecCC
Confidence            8999999999999999998 789999998663   456788775

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.71  E-value=6.7e-17  Score=122.69  Aligned_cols=114  Identities=21%  Similarity=0.368  Sum_probs=85.2

Q ss_pred             cccCccccceeccCCCcCccc-ccCcccCCC----------------------CCCCEEeCCCCCCCCccchhhcCCCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTR-VRKGAFADN----------------------LNLETLTLNKNPKLKIIEEDALVGLPN   60 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~-i~~~~~~~l----------------------~~L~~l~l~~n~~l~~~~~~~~~~l~~   60 (150)
                      .|.++++|++|++++| .+.. ++...+..+                      ++|+.|++++|. ++.++...+ .+++
T Consensus       369 ~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~-l~~ip~~~~-~l~~  445 (520)
T 2z7x_B          369 MTTQMKSLQQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIPKQVV-KLEA  445 (520)
T ss_dssp             HHTTCTTCCEEECCSS-CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSC-CCCCCGGGG-GCTT
T ss_pred             HHhhCCCCCEEECCCC-cCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCc-ccccchhhh-cCCC
Confidence            3455556666666665 5554 444334333                      466666676664 666666544 7899


Q ss_pred             CCeEecCCCCccccCcC-cCCCCCccEEEccCCCcccccChHHH-HHHHhhcC---CCCeeeCCC
Q psy16571         61 LYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCNILWL-REMLVRRN---TSAVFCNSP  120 (150)
Q Consensus        61 L~~l~l~~n~l~~lp~~-~~~~~~L~~L~l~~N~~~c~c~~~~l-~~~~~~~~---~~~~~C~~~  120 (150)
                      |+.|++++|.++.+|.. +..+++|+.|++++|+|.|+|.+.|+ ..|..+..   ..+++|+.|
T Consensus       446 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~C~~p  510 (520)
T 2z7x_B          446 LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS  510 (520)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTTT
T ss_pred             CCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHHHhccccCCCCCCcCCc
Confidence            99999999999999887 55689999999999999999999999 99987654   467899998

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.70  E-value=4.3e-17  Score=114.75  Aligned_cols=115  Identities=24%  Similarity=0.384  Sum_probs=80.9

Q ss_pred             cccCccccceeccCCCcCccccc-CcccCCCCCCCEEeCCCCCCCCccchhhcC--------------------------
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVR-KGAFADNLNLETLTLNKNPKLKIIEEDALV--------------------------   56 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~-~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~--------------------------   56 (150)
                      .|.++++|++|++++| .++.+. +..|..+++|+.|++++|. ++.+++..|.                          
T Consensus       119 ~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~  196 (276)
T 2z62_A          119 PIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA  196 (276)
T ss_dssp             CCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTS
T ss_pred             hcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeecCCCcccccCccc
Confidence            4556666666666666 666543 4456666666666666664 5554432221                          


Q ss_pred             -CCCCCCeEecCCCCccccCcCcC-CCCCccEEEccCCCcccccC-hHHHHHHHhhcC---CCCeeeCCC
Q psy16571         57 -GLPNLYHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCN-ILWLREMLVRRN---TSAVFCNSP  120 (150)
Q Consensus        57 -~l~~L~~l~l~~n~l~~lp~~~~-~~~~L~~L~l~~N~~~c~c~-~~~l~~~~~~~~---~~~~~C~~~  120 (150)
                       ...+|+.|++++|.++.+|..++ .+++|+.|++++|+|.|+|. +.|+..|.....   .....|..+
T Consensus       197 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~~~~~~~~~~~C~~~  266 (276)
T 2z62_A          197 FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS  266 (276)
T ss_dssp             SCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGBCSCCBBTTT
T ss_pred             cCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHHHHhcccccCCCceeeCC
Confidence             12368888899999998887654 48999999999999999996 789999987653   456788887

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.69  E-value=2e-16  Score=121.31  Aligned_cols=121  Identities=21%  Similarity=0.318  Sum_probs=89.6

Q ss_pred             cccCccccceeccCCCcCccc-ccCcccCCC----------------------CCCCEEeCCCCCCCCccchhhcCCCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTR-VRKGAFADN----------------------LNLETLTLNKNPKLKIIEEDALVGLPN   60 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~-i~~~~~~~l----------------------~~L~~l~l~~n~~l~~~~~~~~~~l~~   60 (150)
                      .|.++++|+.|++++| .++. ++...+..+                      ++|+.|++++|. ++.++...+ .+++
T Consensus       398 ~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~-l~~ip~~~~-~l~~  474 (562)
T 3a79_B          398 MTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDVT-HLQA  474 (562)
T ss_dssp             TTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSC-CCCCCTTTT-SSCC
T ss_pred             hhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCc-CcccChhhc-CCCC
Confidence            3556666666666666 5555 444433333                      467777777774 777776655 7899


Q ss_pred             CCeEecCCCCccccCcC-cCCCCCccEEEccCCCcccccChHHHHH-HHhhcC-----------CCCeeeCCCccccCcc
Q psy16571         61 LYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCNILWLRE-MLVRRN-----------TSAVFCNSPAPLKYKS  127 (150)
Q Consensus        61 L~~l~l~~n~l~~lp~~-~~~~~~L~~L~l~~N~~~c~c~~~~l~~-~~~~~~-----------~~~~~C~~~~~l~~~~  127 (150)
                      |+.|++++|.++.+|.. +..+++|+.|++++|+|.|+|.+.|+.+ |.....           ...+.|++    +|++
T Consensus       475 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~----~g~~  550 (562)
T 3a79_B          475 LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG----SGKP  550 (562)
T ss_dssp             CSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS----SCCC
T ss_pred             CCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC----CCcE
Confidence            99999999999999987 6668999999999999999999999955 775442           34678877    6777


Q ss_pred             cccc
Q psy16571        128 LISL  131 (150)
Q Consensus       128 ~~~~  131 (150)
                      +.++
T Consensus       551 l~~~  554 (562)
T 3a79_B          551 VRSI  554 (562)
T ss_dssp             TTTC
T ss_pred             eeee
Confidence            7766

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.69  E-value=3.7e-16  Score=105.77  Aligned_cols=106  Identities=25%  Similarity=0.425  Sum_probs=87.7

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCc-CCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM-LAW   81 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~-~~~   81 (150)
                      ..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.++... ..+
T Consensus        70 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l  147 (208)
T 2o6s_A           70 GVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL  147 (208)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             hhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccC
Confidence            45677888888888888 8888887777888888888888885 88888777788889999999999998887764 458


Q ss_pred             CCccEEEccCCCcccccC-hHHHHHHHhhc
Q psy16571         82 PELRTIDIAENPIECGCN-ILWLREMLVRR  110 (150)
Q Consensus        82 ~~L~~L~l~~N~~~c~c~-~~~l~~~~~~~  110 (150)
                      ++|+.|++++|++.|+|. +.++..|....
T Consensus       148 ~~L~~L~l~~N~~~~~~~~l~~L~~~~n~~  177 (208)
T 2o6s_A          148 TSLQYIWLHDNPWDCTCPGIRYLSEWINKH  177 (208)
T ss_dssp             TTCCEEECCSCCBCCCTTTTHHHHHHHHHC
T ss_pred             CCccEEEecCCCeecCCCCHHHHHHHHHhC
Confidence            999999999999999996 77887776654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.67  E-value=2.3e-15  Score=105.88  Aligned_cols=106  Identities=27%  Similarity=0.420  Sum_probs=86.9

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCc-CCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM-LAW   81 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~-~~~   81 (150)
                      ..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.++... ..+
T Consensus       127 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  204 (272)
T 3rfs_A          127 GVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL  204 (272)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             HHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCC
Confidence            44777888888888888 8888887777888888888888885 88888777788889999999999998877654 458


Q ss_pred             CCccEEEccCCCcccccC-hHHHHHHHhhc
Q psy16571         82 PELRTIDIAENPIECGCN-ILWLREMLVRR  110 (150)
Q Consensus        82 ~~L~~L~l~~N~~~c~c~-~~~l~~~~~~~  110 (150)
                      ++|+.|++++|+|.|+|. +.++..|....
T Consensus       205 ~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~  234 (272)
T 3rfs_A          205 TSLQYIWLHDNPWDCTCPGIRYLSEWINKH  234 (272)
T ss_dssp             TTCCEEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred             cCCCEEEccCCCccccCcHHHHHHHHHHhC
Confidence            999999999999999996 67777776543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.66  E-value=7.7e-16  Score=117.72  Aligned_cols=117  Identities=23%  Similarity=0.368  Sum_probs=95.8

Q ss_pred             CccccCccccceeccCCCcCcc-cccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLT-RVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-ML   79 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~-~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~   79 (150)
                      |..|.++++|++|++++| .+. ...+..+..+++|+.|++++|. +..+.+..|..+++|+.|++++|.++.++.. +.
T Consensus       438 ~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  515 (570)
T 2z63_A          438 NGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD  515 (570)
T ss_dssp             TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             hhhhhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence            456778888888888888 775 3334578889999999999996 9988888889999999999999999988765 45


Q ss_pred             CCCCccEEEccCCCcccccChHHHH-HHHhhcC---CCCeeeCCC
Q psy16571         80 AWPELRTIDIAENPIECGCNILWLR-EMLVRRN---TSAVFCNSP  120 (150)
Q Consensus        80 ~~~~L~~L~l~~N~~~c~c~~~~l~-~~~~~~~---~~~~~C~~~  120 (150)
                      .+++|+.|++++|+|.|+|...|+. .|+....   ....+|++|
T Consensus       516 ~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~~C~~~  560 (570)
T 2z63_A          516 RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS  560 (570)
T ss_dssp             TCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCCBBTTT
T ss_pred             cccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCchhhCCC
Confidence            6899999999999999999988776 8887652   222299887

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.65  E-value=1.4e-16  Score=115.75  Aligned_cols=73  Identities=23%  Similarity=0.434  Sum_probs=61.1

Q ss_pred             cCCCCCCCeEecCCCCccccCcCc-CCCCCccEEEccCCCcccccC-hHHHHHHHhhcC---CCCeeeCCCccccCcccc
Q psy16571         55 LVGLPNLYHLNLKENAFTSFSESM-LAWPELRTIDIAENPIECGCN-ILWLREMLVRRN---TSAVFCNSPAPLKYKSLI  129 (150)
Q Consensus        55 ~~~l~~L~~l~l~~n~l~~lp~~~-~~~~~L~~L~l~~N~~~c~c~-~~~l~~~~~~~~---~~~~~C~~~~~l~~~~~~  129 (150)
                      +..+++|+.|++++|.++.+|..+ ..+++|+.|++++|+|.|+|. +.|+..|.....   ...+.|++|    |+++.
T Consensus       273 l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~~C~~p----~~~l~  348 (353)
T 2z80_A          273 LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS----GKPVR  348 (353)
T ss_dssp             HHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTTT----CCBGG
T ss_pred             HhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhccccCCCCcccCCC----CCcce
Confidence            456789999999999999999886 468999999999999999996 889999998764   347899987    55555


Q ss_pred             cc
Q psy16571        130 SL  131 (150)
Q Consensus       130 ~~  131 (150)
                      ++
T Consensus       349 ~~  350 (353)
T 2z80_A          349 SI  350 (353)
T ss_dssp             GC
T ss_pred             ee
Confidence            44

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.62  E-value=3.6e-15  Score=113.69  Aligned_cols=93  Identities=23%  Similarity=0.387  Sum_probs=71.4

Q ss_pred             CCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCCCCccEEEccCCCcccccC-hHHHHHHHhh
Q psy16571         32 DNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCN-ILWLREMLVR  109 (150)
Q Consensus        32 ~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~~~L~~L~l~~N~~~c~c~-~~~l~~~~~~  109 (150)
                      .+++|+.|++++|. ++.++..  ..+++|+.|++++|.++.+++. +..+++|+.|++++|+|.|+|. +.|+..|+..
T Consensus       449 ~l~~L~~L~Ls~N~-l~~ip~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~  525 (549)
T 2z81_A          449 FLPRLQELYISRNK-LKTLPDA--SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK  525 (549)
T ss_dssp             CCTTCCEEECCSSC-CSSCCCG--GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred             cCChhcEEECCCCc-cCcCCCc--ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHh
Confidence            56677777777775 7766653  3578888888888888877665 5568999999999999999999 5788899876


Q ss_pred             cC---CCCeeeCCCccccCcccccc
Q psy16571        110 RN---TSAVFCNSPAPLKYKSLISL  131 (150)
Q Consensus       110 ~~---~~~~~C~~~~~l~~~~~~~~  131 (150)
                      ..   ...+.|..|    |+++.++
T Consensus       526 ~~~~~~~~~~C~~~----~~~~~~~  546 (549)
T 2z81_A          526 NSQKEQGSAKCSGS----GKPVRSI  546 (549)
T ss_dssp             CTTTEESCCBBTTT----CCBGGGC
T ss_pred             cccccCCCCeECCC----Ccchhhc
Confidence            53   467889887    5555553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.61  E-value=4.2e-15  Score=102.22  Aligned_cols=93  Identities=20%  Similarity=0.277  Sum_probs=83.4

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW   81 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~   81 (150)
                      |..|.++++|+.|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.+|..+..+
T Consensus        57 ~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l  134 (229)
T 3e6j_A           57 PGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERL  134 (229)
T ss_dssp             TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGC
T ss_pred             HHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCcccccCcccccC
Confidence            566888999999999999 8999988888999999999999996 99998888888999999999999999999888889


Q ss_pred             CCccEEEccCCCccc
Q psy16571         82 PELRTIDIAENPIEC   96 (150)
Q Consensus        82 ~~L~~L~l~~N~~~c   96 (150)
                      ++|+.|++++|.+.-
T Consensus       135 ~~L~~L~L~~N~l~~  149 (229)
T 3e6j_A          135 THLTHLALDQNQLKS  149 (229)
T ss_dssp             TTCSEEECCSSCCCC
T ss_pred             CCCCEEECCCCcCCc
Confidence            999999999998874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.58  E-value=1.4e-14  Score=99.06  Aligned_cols=93  Identities=17%  Similarity=0.290  Sum_probs=74.8

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLA   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~   80 (150)
                      +..|.++++|+.|++++| .++.+.+..|.++++|+.|++++|. ++.+++..|..+++|+.|+|++|.++.++.. +..
T Consensus        49 ~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~  126 (220)
T 2v9t_B           49 PGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD  126 (220)
T ss_dssp             TTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             HhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCC
Confidence            346778888888888888 8888877788888888888888885 8888887788888888888888888877554 445


Q ss_pred             CCCccEEEccCCCccc
Q psy16571         81 WPELRTIDIAENPIEC   96 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c   96 (150)
                      +++|+.|++++|.+.-
T Consensus       127 l~~L~~L~L~~N~l~~  142 (220)
T 2v9t_B          127 LHNLNLLSLYDNKLQT  142 (220)
T ss_dssp             CTTCCEEECCSSCCSC
T ss_pred             CCCCCEEECCCCcCCE
Confidence            7888888888887764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.55  E-value=3.4e-14  Score=97.16  Aligned_cols=93  Identities=23%  Similarity=0.412  Sum_probs=82.8

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccC-cCcCCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS-ESMLAW   81 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp-~~~~~~   81 (150)
                      ..|.++++|+.|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.++.++ ..+..+
T Consensus        51 ~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  128 (220)
T 2v70_A           51 GIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL  128 (220)
T ss_dssp             CCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC
T ss_pred             hhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC
Confidence            45888999999999999 9999998899999999999999996 99999988999999999999999999875 456668


Q ss_pred             CCccEEEccCCCcccc
Q psy16571         82 PELRTIDIAENPIECG   97 (150)
Q Consensus        82 ~~L~~L~l~~N~~~c~   97 (150)
                      ++|+.|++++|.+.-.
T Consensus       129 ~~L~~L~L~~N~l~~~  144 (220)
T 2v70_A          129 SSVRLLSLYDNQITTV  144 (220)
T ss_dssp             TTCSEEECTTSCCCCB
T ss_pred             ccCCEEECCCCcCCEE
Confidence            9999999999988653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.55  E-value=2.1e-14  Score=110.63  Aligned_cols=93  Identities=23%  Similarity=0.365  Sum_probs=75.3

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLA   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~   80 (150)
                      +.+|.++++|++|++++| .++.+++++|.++++|++|++++|+ ++.+++.+|.++++|+.|++++|.++.++.. +..
T Consensus        69 ~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~  146 (635)
T 4g8a_A           69 SYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH  146 (635)
T ss_dssp             TTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTT
T ss_pred             HHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhc
Confidence            467888888888888888 8888888888888888888888885 8888888888888888888888888887764 445


Q ss_pred             CCCccEEEccCCCccc
Q psy16571         81 WPELRTIDIAENPIEC   96 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c   96 (150)
                      +++|+.|++++|.+..
T Consensus       147 L~~L~~L~Ls~N~l~~  162 (635)
T 4g8a_A          147 LKTLKELNVAHNLIQS  162 (635)
T ss_dssp             CTTCCEEECCSSCCCC
T ss_pred             CcccCeeccccCcccc
Confidence            7778888888777643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.52  E-value=9e-14  Score=96.61  Aligned_cols=89  Identities=24%  Similarity=0.359  Sum_probs=42.7

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCCCC
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPE   83 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~~~   83 (150)
                      |.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.++.++.. +..+++
T Consensus        79 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  156 (251)
T 3m19_A           79 FDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN  156 (251)
T ss_dssp             TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence            444444444444444 4444444444444444444444443 4444444444455555555555555544442 233455


Q ss_pred             ccEEEccCCCcc
Q psy16571         84 LRTIDIAENPIE   95 (150)
Q Consensus        84 L~~L~l~~N~~~   95 (150)
                      |+.|++++|.+.
T Consensus       157 L~~L~L~~N~l~  168 (251)
T 3m19_A          157 LQTLSLSTNQLQ  168 (251)
T ss_dssp             CCEEECCSSCCS
T ss_pred             CCEEECCCCcCC
Confidence            555555555544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.52  E-value=1.1e-13  Score=93.47  Aligned_cols=92  Identities=22%  Similarity=0.359  Sum_probs=73.2

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCc-CCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM-LAW   81 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~-~~~   81 (150)
                      ..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.++... ..+
T Consensus        46 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  123 (208)
T 2o6s_A           46 GVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL  123 (208)
T ss_dssp             TTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             hhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccC
Confidence            45777888888888888 8888887777888888888888885 88887777778888888888888888777654 457


Q ss_pred             CCccEEEccCCCccc
Q psy16571         82 PELRTIDIAENPIEC   96 (150)
Q Consensus        82 ~~L~~L~l~~N~~~c   96 (150)
                      ++|+.|++++|.+.-
T Consensus       124 ~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A          124 TQLKDLRLYQNQLKS  138 (208)
T ss_dssp             TTCCEEECCSSCCSC
T ss_pred             CcCCEEECCCCccce
Confidence            888888888887763

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.50  E-value=1.6e-13  Score=97.47  Aligned_cols=93  Identities=27%  Similarity=0.310  Sum_probs=82.8

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC-
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~-   80 (150)
                      |..+.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.++.+|..++. 
T Consensus        93 ~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~  170 (290)
T 1p9a_G           93 PLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG  170 (290)
T ss_dssp             CCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTT
T ss_pred             chhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCccCHHHhcC
Confidence            456778889999999999 9999998889999999999999996 9999988888899999999999999999887654 


Q ss_pred             CCCccEEEccCCCccc
Q psy16571         81 WPELRTIDIAENPIEC   96 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c   96 (150)
                      +++|+.|++++|.+.-
T Consensus       171 l~~L~~L~L~~N~l~~  186 (290)
T 1p9a_G          171 LENLDTLLLQENSLYT  186 (290)
T ss_dssp             CTTCCEEECCSSCCCC
T ss_pred             cCCCCEEECCCCcCCc
Confidence            8999999999998873

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.48  E-value=2.7e-14  Score=104.95  Aligned_cols=114  Identities=18%  Similarity=0.250  Sum_probs=67.8

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWP   82 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~   82 (150)
                      ..|.++++|+.|++++| .++.++. .+..+++|+.|++++|. +..+++. +..+++|+.|++++|.++.++  +..++
T Consensus       266 ~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~-~~~l~~L~~L~L~~N~i~~~~--~~~~~  339 (390)
T 3o6n_A          266 HPFVKMQRLERLYISNN-RLVALNL-YGQPIPTLKVLDLSHNH-LLHVERN-QPQFDRLENLYLDHNSIVTLK--LSTHH  339 (390)
T ss_dssp             GGGTTCSSCCEEECCSS-CCCEEEC-SSSCCTTCCEEECCSSC-CCCCGGG-HHHHTTCSEEECCSSCCCCCC--CCTTC
T ss_pred             hHccccccCCEEECCCC-cCcccCc-ccCCCCCCCEEECCCCc-ceecCcc-ccccCcCCEEECCCCccceeC--chhhc
Confidence            34445555555555555 5555443 23345555555555553 5554433 234556666666666666554  34477


Q ss_pred             CccEEEccCCCcccccChHHHHHHHhhc-CCCCeeeCCCcc
Q psy16571         83 ELRTIDIAENPIECGCNILWLREMLVRR-NTSAVFCNSPAP  122 (150)
Q Consensus        83 ~L~~L~l~~N~~~c~c~~~~l~~~~~~~-~~~~~~C~~~~~  122 (150)
                      +|+.|++++|+|.|+|...|+..+.+.. ......|..+..
T Consensus       340 ~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~  380 (390)
T 3o6n_A          340 TLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQ  380 (390)
T ss_dssp             CCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCSCCCTTCE
T ss_pred             cCCEEEcCCCCccchhHHHHHHHHHhhcccccCceeccccc
Confidence            8999999999999999887777655433 244556765543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.45  E-value=4.5e-13  Score=97.73  Aligned_cols=93  Identities=23%  Similarity=0.257  Sum_probs=80.2

Q ss_pred             Ccccc-CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc-CcC
Q psy16571          2 EKEVK-GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SML   79 (150)
Q Consensus         2 p~~f~-~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~-~~~   79 (150)
                      +..|. ++.+|+.|++++| .++.+++.+|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.+..++. .+.
T Consensus        56 ~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~  133 (361)
T 2xot_A           56 AEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE  133 (361)
T ss_dssp             TTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             hhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhC
Confidence            34566 8899999999999 9999998889999999999999996 999988888899999999999999998755 455


Q ss_pred             CCCCccEEEccCCCccc
Q psy16571         80 AWPELRTIDIAENPIEC   96 (150)
Q Consensus        80 ~~~~L~~L~l~~N~~~c   96 (150)
                      .+++|+.|+|++|.+..
T Consensus       134 ~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A          134 DMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             TCTTCCEEECCSSCCCS
T ss_pred             CcccCCEEECCCCcCCe
Confidence            68999999999998764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.45  E-value=6.9e-13  Score=93.04  Aligned_cols=70  Identities=29%  Similarity=0.372  Sum_probs=34.0

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS   75 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp   75 (150)
                      +|.++++|++|++++| .++.+++..|..+++|+.|++++|. +..+++..|..+++|+.|++++|.++.++
T Consensus        56 ~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  125 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLP  125 (270)
T ss_dssp             SSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             HhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeC
Confidence            4445555555555555 5555554444445555555555553 44444444444444444444444444433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.44  E-value=7.9e-13  Score=92.89  Aligned_cols=91  Identities=25%  Similarity=0.375  Sum_probs=56.0

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCc-CCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM-LAWP   82 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~-~~~~   82 (150)
                      .|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.++... ..++
T Consensus       104 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  181 (272)
T 3rfs_A          104 VFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT  181 (272)
T ss_dssp             TTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             HhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc
Confidence            3555666666666666 6666665556666666666666664 66666555566666666666666666655543 3356


Q ss_pred             CccEEEccCCCccc
Q psy16571         83 ELRTIDIAENPIEC   96 (150)
Q Consensus        83 ~L~~L~l~~N~~~c   96 (150)
                      +|+.|++++|.+..
T Consensus       182 ~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          182 QLKDLRLYQNQLKS  195 (272)
T ss_dssp             TCCEEECCSSCCSC
T ss_pred             cCCEEECCCCcCCc
Confidence            66666666666553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.43  E-value=3.7e-13  Score=86.36  Aligned_cols=90  Identities=23%  Similarity=0.259  Sum_probs=52.7

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccC--cCcCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS--ESMLA   80 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp--~~~~~   80 (150)
                      ..|..+++|+.|++++| .++.+  ..+..+++|+.+++++|. ++...+..+..+++|+.|++++|.++.++  ..+..
T Consensus        36 ~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~  111 (149)
T 2je0_A           36 GLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKK  111 (149)
T ss_dssp             SCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGG
T ss_pred             HHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhh
Confidence            34555666666666666 66655  345566666666666664 65533444444566666666666666543  44555


Q ss_pred             CCCccEEEccCCCccc
Q psy16571         81 WPELRTIDIAENPIEC   96 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c   96 (150)
                      +++|+.|++++|++.-
T Consensus       112 l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A          112 LENLKSLDLFNCEVTN  127 (149)
T ss_dssp             CTTCCEEECTTCGGGG
T ss_pred             CCCCCEEeCcCCcccc
Confidence            6666666666666543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.41  E-value=1.2e-12  Score=92.26  Aligned_cols=90  Identities=27%  Similarity=0.388  Sum_probs=48.5

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAW   81 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~   81 (150)
                      ..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.++.. +..+
T Consensus        99 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  176 (285)
T 1ozn_A           99 ATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL  176 (285)
T ss_dssp             TTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             HHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCc
Confidence            34555555666666655 5555555555555555555555553 5555555455555555555555555555443 2334


Q ss_pred             CCccEEEccCCCc
Q psy16571         82 PELRTIDIAENPI   94 (150)
Q Consensus        82 ~~L~~L~l~~N~~   94 (150)
                      ++|+.|++++|.+
T Consensus       177 ~~L~~L~l~~n~l  189 (285)
T 1ozn_A          177 HSLDRLLLHQNRV  189 (285)
T ss_dssp             TTCCEEECCSSCC
T ss_pred             cccCEEECCCCcc
Confidence            4555555555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.41  E-value=5.8e-13  Score=95.48  Aligned_cols=93  Identities=17%  Similarity=0.258  Sum_probs=76.3

Q ss_pred             CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccE
Q psy16571          7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRT   86 (150)
Q Consensus         7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~   86 (150)
                      .+++|++|++++| .++.++..  ..+++|+.|++++|. ++.+++. +..+++|+.|++++|.++.+|..+..+++|+.
T Consensus       167 ~l~~L~~L~L~~N-~l~~~~~~--~~l~~L~~L~Ls~N~-l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~  241 (317)
T 3o53_A          167 SSDTLEHLNLQYN-FIYDVKGQ--VVFAKLKTLDLSSNK-LAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEH  241 (317)
T ss_dssp             GTTTCCEEECTTS-CCCEEECC--CCCTTCCEEECCSSC-CCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred             ccCcCCEEECCCC-cCcccccc--cccccCCEEECCCCc-CCcchhh-hcccCcccEEECcCCcccchhhHhhcCCCCCE
Confidence            5667777777777 77777542  347888888888885 8888776 77889999999999999999988888999999


Q ss_pred             EEccCCCcccccChHHHH
Q psy16571         87 IDIAENPIECGCNILWLR  104 (150)
Q Consensus        87 L~l~~N~~~c~c~~~~l~  104 (150)
                      |++++|++.|+|...|+.
T Consensus       242 L~l~~N~~~~~~~~~~~~  259 (317)
T 3o53_A          242 FDLRGNGFHCGTLRDFFS  259 (317)
T ss_dssp             EECTTCCCBHHHHHHHHH
T ss_pred             EEccCCCccCcCHHHHHh
Confidence            999999999987766654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.40  E-value=1.4e-12  Score=87.47  Aligned_cols=85  Identities=18%  Similarity=0.286  Sum_probs=77.5

Q ss_pred             cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCCCCccEE
Q psy16571          9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTI   87 (150)
Q Consensus         9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~~~L~~L   87 (150)
                      .+|++|++++| .++.++ ..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.++.++.. +..+++|+.|
T Consensus        31 ~~l~~L~L~~n-~i~~ip-~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L  107 (193)
T 2wfh_A           31 RDVTELYLDGN-QFTLVP-KELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL  107 (193)
T ss_dssp             TTCCEEECCSS-CCCSCC-GGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCC-cCchhH-HHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence            47899999999 999888 589999999999999996 9999999999999999999999999998875 5568999999


Q ss_pred             EccCCCccc
Q psy16571         88 DIAENPIEC   96 (150)
Q Consensus        88 ~l~~N~~~c   96 (150)
                      ++++|.+..
T Consensus       108 ~L~~N~l~~  116 (193)
T 2wfh_A          108 SLHGNDISV  116 (193)
T ss_dssp             ECCSSCCCB
T ss_pred             ECCCCCCCe
Confidence            999999874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.40  E-value=4.7e-13  Score=87.55  Aligned_cols=92  Identities=24%  Similarity=0.248  Sum_probs=72.5

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccC--cCcC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS--ESML   79 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp--~~~~   79 (150)
                      |..|..+++|+.|++++| .++.+  ..+..+++|+.|++++|. +....+..+..+++|+.|++++|.++.++  ..+.
T Consensus        42 ~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~  117 (168)
T 2ell_A           42 EGLTAEFVNLEFLSLINV-GLISV--SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLK  117 (168)
T ss_dssp             SSCCGGGGGCCEEEEESS-CCCCC--SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGS
T ss_pred             HHHHHhCCCCCEEeCcCC-CCCCh--hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEeccCCccCcchhHHHHh
Confidence            445677888888888888 78877  467888888888888886 87755555666888889999988888876  5666


Q ss_pred             CCCCccEEEccCCCcccc
Q psy16571         80 AWPELRTIDIAENPIECG   97 (150)
Q Consensus        80 ~~~~L~~L~l~~N~~~c~   97 (150)
                      .+++|+.|++++|++.-.
T Consensus       118 ~l~~L~~L~l~~N~l~~~  135 (168)
T 2ell_A          118 KLECLKSLDLFNCEVTNL  135 (168)
T ss_dssp             SCSCCCEEECCSSGGGTS
T ss_pred             cCCCCCEEEeeCCcCcch
Confidence            788888999988887643

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.40  E-value=2.2e-12  Score=85.07  Aligned_cols=86  Identities=23%  Similarity=0.390  Sum_probs=78.7

Q ss_pred             cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCc-CCCCCccEE
Q psy16571          9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM-LAWPELRTI   87 (150)
Q Consensus         9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~-~~~~~L~~L   87 (150)
                      ++|+.|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.++... ..+++|+.|
T Consensus        28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  105 (177)
T 2o6r_A           28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL  105 (177)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence            68999999999 9999998889999999999999996 99999888899999999999999999988865 468999999


Q ss_pred             EccCCCccc
Q psy16571         88 DIAENPIEC   96 (150)
Q Consensus        88 ~l~~N~~~c   96 (150)
                      ++++|.+.-
T Consensus       106 ~l~~N~l~~  114 (177)
T 2o6r_A          106 ALDTNQLKS  114 (177)
T ss_dssp             ECCSSCCSC
T ss_pred             ECcCCcceE
Confidence            999999873

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.39  E-value=1.5e-12  Score=91.47  Aligned_cols=91  Identities=26%  Similarity=0.351  Sum_probs=49.8

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccc--cCcCcCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTS--FSESMLAW   81 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~--lp~~~~~~   81 (150)
                      +|.++++|++|++++| .++.+++..|..+++|+.|++++|. +..+++..+..+++|+.|++++|.+..  +|..+..+
T Consensus        71 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l  148 (276)
T 2z62_A           71 AYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL  148 (276)
T ss_dssp             TTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred             HccCCcCCCEEECCCC-ccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccC
Confidence            3444555555555555 5555544445555555555555553 555444445555666666666666654  34455556


Q ss_pred             CCccEEEccCCCccc
Q psy16571         82 PELRTIDIAENPIEC   96 (150)
Q Consensus        82 ~~L~~L~l~~N~~~c   96 (150)
                      ++|+.|++++|.+.-
T Consensus       149 ~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A          149 TNLEHLDLSSNKIQS  163 (276)
T ss_dssp             TTCCEEECCSSCCCE
T ss_pred             CCCCEEECCCCCCCc
Confidence            666677776666543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.39  E-value=2.5e-12  Score=86.04  Aligned_cols=86  Identities=28%  Similarity=0.433  Sum_probs=77.7

Q ss_pred             ccceeccCCCcCcccccCc-ccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCCCCccEE
Q psy16571         10 YLKRLEITGASNLTRVRKG-AFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTI   87 (150)
Q Consensus        10 ~L~~L~l~~n~~l~~i~~~-~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~~~L~~L   87 (150)
                      .|++|++++| .++.+++. .|..+++|+.|++++|. ++.+.+..|..+++|+.|+|++|.++.++.. +..+++|+.|
T Consensus        30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            7899999999 99999874 58899999999999996 9999888899999999999999999988776 4568999999


Q ss_pred             EccCCCcccc
Q psy16571         88 DIAENPIECG   97 (150)
Q Consensus        88 ~l~~N~~~c~   97 (150)
                      ++++|.+...
T Consensus       108 ~L~~N~l~~~  117 (192)
T 1w8a_A          108 NLYDNQISCV  117 (192)
T ss_dssp             ECCSSCCCEE
T ss_pred             ECCCCcCCee
Confidence            9999998753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.39  E-value=7.2e-13  Score=87.40  Aligned_cols=86  Identities=21%  Similarity=0.328  Sum_probs=67.4

Q ss_pred             ccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc--CcCCCCCccEE
Q psy16571         10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLAWPELRTI   87 (150)
Q Consensus        10 ~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~--~~~~~~~L~~L   87 (150)
                      +|+.|++++| .++.+  ..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.+..+|.  .+..+++|+.|
T Consensus        43 ~L~~L~Ls~N-~l~~~--~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L  118 (176)
T 1a9n_A           43 QFDAIDFSDN-EIRKL--DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL  118 (176)
T ss_dssp             CCSEEECCSS-CCCEE--CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEE
T ss_pred             CCCEEECCCC-CCCcc--cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEE
Confidence            7888888888 88777  357778888888888885 888776666778888888888888887776  56667888888


Q ss_pred             EccCCCcccccC
Q psy16571         88 DIAENPIECGCN   99 (150)
Q Consensus        88 ~l~~N~~~c~c~   99 (150)
                      ++++|++.....
T Consensus       119 ~l~~N~i~~~~~  130 (176)
T 1a9n_A          119 CILRNPVTNKKH  130 (176)
T ss_dssp             ECCSSGGGGSTT
T ss_pred             EecCCCCCCcHh
Confidence            888888865544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.37  E-value=2.7e-12  Score=95.78  Aligned_cols=93  Identities=22%  Similarity=0.360  Sum_probs=82.0

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcccc-CcCcCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF-SESMLA   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~l-p~~~~~   80 (150)
                      |..|.++++|++|++++| .+..+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.+ |..+..
T Consensus       292 ~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  369 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG  369 (455)
T ss_dssp             TTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             hhhcccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence            456888899999999999 9999988889999999999999996 9998888889999999999999999977 556667


Q ss_pred             CCCccEEEccCCCccc
Q psy16571         81 WPELRTIDIAENPIEC   96 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c   96 (150)
                      +++|+.|++++|.+..
T Consensus       370 l~~L~~L~L~~N~l~~  385 (455)
T 3v47_A          370 LPNLKELALDTNQLKS  385 (455)
T ss_dssp             CTTCCEEECCSSCCSC
T ss_pred             cccccEEECCCCcccc
Confidence            8999999999998875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.36  E-value=4.4e-12  Score=93.12  Aligned_cols=91  Identities=15%  Similarity=0.238  Sum_probs=52.8

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAW   81 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~   81 (150)
                      .+|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.+..++.. +..+
T Consensus        87 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  164 (390)
T 3o6n_A           87 YAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT  164 (390)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSC
T ss_pred             hhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCC
Confidence            34555566666666665 5665555555566666666666664 6655555555566666666666666555433 3345


Q ss_pred             CCccEEEccCCCcc
Q psy16571         82 PELRTIDIAENPIE   95 (150)
Q Consensus        82 ~~L~~L~l~~N~~~   95 (150)
                      ++|+.|++++|.+.
T Consensus       165 ~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          165 TSLQNLQLSSNRLT  178 (390)
T ss_dssp             TTCCEEECCSSCCS
T ss_pred             CCCCEEECCCCcCC
Confidence            56666666666554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.36  E-value=6.1e-13  Score=91.67  Aligned_cols=87  Identities=18%  Similarity=0.317  Sum_probs=60.2

Q ss_pred             ccccCccccceeccCCCcC-cccccCcccCCCCCCCEEeCCC-CCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC
Q psy16571          3 KEVKGLSYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNK-NPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA   80 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~-l~~i~~~~~~~l~~L~~l~l~~-n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~   80 (150)
                      .+|.++++|++|++++| . ++.+++.+|.++++|+.+++++ |. ++.+++..|..+++|+.|++++|.++.+|. +..
T Consensus        49 ~~~~~l~~L~~L~l~~n-~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~  125 (239)
T 2xwt_C           49 HAFSNLPNISRIYVSID-VTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTK  125 (239)
T ss_dssp             TTTTTCTTCCEEEEECC-SSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEEEEEEECCCSCCC-CTT
T ss_pred             HHccCCCCCcEEeCCCC-CCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEEeCCCCCCccccc-ccc
Confidence            45777777777777777 5 7777777777777777777776 64 777777667777777777777776666664 444


Q ss_pred             CCCcc---EEEccCC
Q psy16571         81 WPELR---TIDIAEN   92 (150)
Q Consensus        81 ~~~L~---~L~l~~N   92 (150)
                      +++|+   .|++++|
T Consensus       126 l~~L~~L~~L~l~~N  140 (239)
T 2xwt_C          126 VYSTDIFFILEITDN  140 (239)
T ss_dssp             CCBCCSEEEEEEESC
T ss_pred             ccccccccEEECCCC
Confidence            44444   6666665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.36  E-value=3.7e-12  Score=98.21  Aligned_cols=89  Identities=21%  Similarity=0.336  Sum_probs=44.7

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccC-cCcCCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS-ESMLAWP   82 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp-~~~~~~~   82 (150)
                      +|.++++|++|++++| .++.+++.+|..+++|+.|++++|. +..+.+..|..+++|+.|++++|.+..++ ..+..++
T Consensus        51 ~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  128 (606)
T 3vq2_A           51 SFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI  128 (606)
T ss_dssp             TTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred             hccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence            4555555555555555 5555555555555555555555553 55554444555555555555555554443 2233344


Q ss_pred             CccEEEccCCCc
Q psy16571         83 ELRTIDIAENPI   94 (150)
Q Consensus        83 ~L~~L~l~~N~~   94 (150)
                      +|+.|++++|.+
T Consensus       129 ~L~~L~L~~n~l  140 (606)
T 3vq2_A          129 TLKKLNVAHNFI  140 (606)
T ss_dssp             TCCEEECCSSCC
T ss_pred             CCCEEeCCCCcc
Confidence            444444444433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.36  E-value=4.4e-12  Score=94.95  Aligned_cols=73  Identities=27%  Similarity=0.356  Sum_probs=52.8

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE   76 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~   76 (150)
                      +.+|.++++|+.|++++| .++.+++..|.++++|+.|++++|. ++.+++..|..+++|+.|+|++|.+..++.
T Consensus        92 ~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  164 (452)
T 3zyi_A           92 ADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPS  164 (452)
T ss_dssp             TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECT
T ss_pred             HHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCH
Confidence            456777777777777777 7777777777777777777777775 777777667777777777777777776655

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.36  E-value=3.3e-12  Score=92.65  Aligned_cols=88  Identities=20%  Similarity=0.304  Sum_probs=65.6

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc--CcCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLA   80 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~--~~~~   80 (150)
                      ..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.+|.  .+..
T Consensus        70 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~  147 (353)
T 2z80_A           70 SDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH  147 (353)
T ss_dssp             TTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTT
T ss_pred             HHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhcc
Confidence            35777778888888887 7777777777778888888888885 777777767777888888888887777766  3444


Q ss_pred             CCCccEEEccCC
Q psy16571         81 WPELRTIDIAEN   92 (150)
Q Consensus        81 ~~~L~~L~l~~N   92 (150)
                      +++|+.|++++|
T Consensus       148 l~~L~~L~l~~n  159 (353)
T 2z80_A          148 LTKLQILRVGNM  159 (353)
T ss_dssp             CTTCCEEEEEES
T ss_pred             CCCCcEEECCCC
Confidence            666777776666

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.35  E-value=1.7e-12  Score=98.32  Aligned_cols=92  Identities=17%  Similarity=0.255  Sum_probs=72.9

Q ss_pred             CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccE
Q psy16571          7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRT   86 (150)
Q Consensus         7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~   86 (150)
                      .+++|+.|++++| .++.++.  ...+++|+.|++++|. ++.+++. |..+++|+.|++++|.++.+|..+..+++|+.
T Consensus       167 ~l~~L~~L~Ls~N-~l~~~~~--~~~l~~L~~L~Ls~N~-l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~  241 (487)
T 3oja_A          167 SSDTLEHLNLQYN-FIYDVKG--QVVFAKLKTLDLSSNK-LAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEH  241 (487)
T ss_dssp             GTTTCCEEECTTS-CCCEEEC--CCCCTTCCEEECCSSC-CCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred             hCCcccEEecCCC-ccccccc--cccCCCCCEEECCCCC-CCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCE
Confidence            4566666677766 6666644  3347788888888885 8887776 67789999999999999999988888899999


Q ss_pred             EEccCCCcccccChHHH
Q psy16571         87 IDIAENPIECGCNILWL  103 (150)
Q Consensus        87 L~l~~N~~~c~c~~~~l  103 (150)
                      |++++|++.|++-..|+
T Consensus       242 L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          242 FDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             EECTTCCBCHHHHHHHH
T ss_pred             EEcCCCCCcCcchHHHH
Confidence            99999999998765544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.34  E-value=5.8e-12  Score=93.98  Aligned_cols=88  Identities=32%  Similarity=0.433  Sum_probs=57.5

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-C
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-A   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~   80 (150)
                      +.+|.++++|++|++++| .++.+++..|.++++|+.|++++|. ++.+++..|..+++|+.|+|++|.+..++...+ .
T Consensus        81 ~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~  158 (440)
T 3zyj_A           81 VNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR  158 (440)
T ss_dssp             TTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTT
T ss_pred             HHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhh
Confidence            345677777777777777 7777776677777777777777774 777776666777777777777777666655322 2


Q ss_pred             CCCccEEEccC
Q psy16571         81 WPELRTIDIAE   91 (150)
Q Consensus        81 ~~~L~~L~l~~   91 (150)
                      +++|+.|++++
T Consensus       159 l~~L~~L~l~~  169 (440)
T 3zyj_A          159 IPSLRRLDLGE  169 (440)
T ss_dssp             CTTCCEEECCC
T ss_pred             CcccCEeCCCC
Confidence            44444444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.34  E-value=5.5e-12  Score=94.77  Aligned_cols=90  Identities=29%  Similarity=0.483  Sum_probs=51.9

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc-CcCCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAW   81 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~-~~~~~   81 (150)
                      ..|.++++|++|++++| .++.+.+..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.+..++. .+..+
T Consensus        50 ~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l  127 (477)
T 2id5_A           50 DEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL  127 (477)
T ss_dssp             TTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             hHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHcccc
Confidence            45566666666666666 6666655566666666666666664 666665555556666666666666554433 23334


Q ss_pred             CCccEEEccCCCc
Q psy16571         82 PELRTIDIAENPI   94 (150)
Q Consensus        82 ~~L~~L~l~~N~~   94 (150)
                      ++|+.|++++|.+
T Consensus       128 ~~L~~L~l~~n~l  140 (477)
T 2id5_A          128 YNLKSLEVGDNDL  140 (477)
T ss_dssp             TTCCEEEECCTTC
T ss_pred             ccCCEEECCCCcc
Confidence            5555555555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.34  E-value=6.5e-12  Score=97.08  Aligned_cols=92  Identities=15%  Similarity=0.231  Sum_probs=58.7

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAW   81 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~   81 (150)
                      .+|.++++|+.|++++| .++.+++..|..+++|+.|++++|. +..+++..|..+++|+.|+|++|.+..++.. +..+
T Consensus        93 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  170 (597)
T 3oja_B           93 YAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT  170 (597)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred             HHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC
Confidence            45666666666666666 6666666666666666666666664 6666666566666666666666666655443 4446


Q ss_pred             CCccEEEccCCCccc
Q psy16571         82 PELRTIDIAENPIEC   96 (150)
Q Consensus        82 ~~L~~L~l~~N~~~c   96 (150)
                      ++|+.|++++|.+..
T Consensus       171 ~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          171 TSLQNLQLSSNRLTH  185 (597)
T ss_dssp             TTCCEEECTTSCCSB
T ss_pred             CcCcEEECcCCCCCC
Confidence            666666666666543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.34  E-value=5.1e-12  Score=97.43  Aligned_cols=92  Identities=25%  Similarity=0.366  Sum_probs=55.4

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccC-cCcCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS-ESMLA   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp-~~~~~   80 (150)
                      |.+|.++++|++|++++| .+..+.+.+|..+++|+.|++++|. +..+.+..|..+++|+.|++++|.++.++ ..+..
T Consensus        50 ~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~  127 (606)
T 3t6q_A           50 NTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN  127 (606)
T ss_dssp             TTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTT
T ss_pred             hhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCc-ccccChhhhcccccccEeeccccCcccCCcchhcc
Confidence            445666666666666666 6666666666666666666666664 66665555666666666666666666542 33334


Q ss_pred             CCCccEEEccCCCcc
Q psy16571         81 WPELRTIDIAENPIE   95 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~   95 (150)
                      +++|+.|++++|.+.
T Consensus       128 l~~L~~L~L~~n~l~  142 (606)
T 3t6q_A          128 QKTLESLYLGSNHIS  142 (606)
T ss_dssp             CTTCCEEECCSSCCC
T ss_pred             CCcccEEECCCCccc
Confidence            555555555555443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.33  E-value=6.3e-12  Score=96.06  Aligned_cols=90  Identities=23%  Similarity=0.381  Sum_probs=49.0

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc-CcCCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAW   81 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~-~~~~~   81 (150)
                      .+|.++++|++|++++| .++.+++.+|..+++|+.|++++|. +..+++..|.++++|+.|++++|.+..++. .+..+
T Consensus        46 ~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l  123 (570)
T 2z63_A           46 YSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL  123 (570)
T ss_dssp             TTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTC
T ss_pred             hHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCccccccccccccccccCCCcccccc
Confidence            34556666666666666 5666655556666666666666664 555555555555555555555555554443 23334


Q ss_pred             CCccEEEccCCCc
Q psy16571         82 PELRTIDIAENPI   94 (150)
Q Consensus        82 ~~L~~L~l~~N~~   94 (150)
                      ++|+.|++++|.+
T Consensus       124 ~~L~~L~L~~n~l  136 (570)
T 2z63_A          124 KTLKELNVAHNLI  136 (570)
T ss_dssp             TTCCEEECCSSCC
T ss_pred             ccccEEecCCCcc
Confidence            4444444444433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.31  E-value=1.1e-12  Score=86.52  Aligned_cols=90  Identities=23%  Similarity=0.309  Sum_probs=79.7

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccch-hhcCCCCCCCeEecCCCCccccCcC----c
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFTSFSES----M   78 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~-~~~~~l~~L~~l~l~~n~l~~lp~~----~   78 (150)
                      .|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.++. ..+..+++|+.+++++|.++.+|..    +
T Consensus        59 ~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~  136 (176)
T 1a9n_A           59 GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVI  136 (176)
T ss_dssp             CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHH
T ss_pred             ccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHH
Confidence            5788899999999999 9999998777899999999999996 988875 4678899999999999999998875    6


Q ss_pred             CCCCCccEEEccCCCcc
Q psy16571         79 LAWPELRTIDIAENPIE   95 (150)
Q Consensus        79 ~~~~~L~~L~l~~N~~~   95 (150)
                      ..+++|+.|++++|...
T Consensus       137 ~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          137 YKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HHCTTCSEETTEECCHH
T ss_pred             HHCCccceeCCCcCCHH
Confidence            66899999999988754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.31  E-value=4.9e-12  Score=97.77  Aligned_cols=93  Identities=18%  Similarity=0.305  Sum_probs=84.4

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCc-CCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM-LAW   81 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~-~~~   81 (150)
                      ..|.++++|+.|++++| .++.+++..|..+++|+.|++++|. +..+++..|..+++|+.|+|++|.++.+|..+ ..+
T Consensus        69 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l  146 (597)
T 3oja_B           69 ALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT  146 (597)
T ss_dssp             HHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             HHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccC
Confidence            34677899999999999 9999998899999999999999996 99999988999999999999999999999876 568


Q ss_pred             CCccEEEccCCCcccc
Q psy16571         82 PELRTIDIAENPIECG   97 (150)
Q Consensus        82 ~~L~~L~l~~N~~~c~   97 (150)
                      ++|+.|++++|.+...
T Consensus       147 ~~L~~L~Ls~N~l~~~  162 (597)
T 3oja_B          147 PKLTTLSMSNNNLERI  162 (597)
T ss_dssp             TTCCEEECCSSCCCBC
T ss_pred             CCCCEEEeeCCcCCCC
Confidence            9999999999988643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.31  E-value=5.3e-12  Score=97.24  Aligned_cols=90  Identities=21%  Similarity=0.316  Sum_probs=73.0

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcccc--CcCcCCCC
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF--SESMLAWP   82 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~l--p~~~~~~~   82 (150)
                      |.++++|+.|++++| .++.+|. .+..+++|+.|++++|. ++.++  .+..+++|+.|+|++|.|+.+  |..+..++
T Consensus       459 ~~~l~~L~~L~Ls~N-~l~~lp~-~~~~l~~L~~L~Ls~N~-l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~  533 (567)
T 1dce_A          459 LEQLLLVTHLDLSHN-RLRALPP-ALAALRCLEVLQASDNA-LENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCP  533 (567)
T ss_dssp             GGGGTTCCEEECCSS-CCCCCCG-GGGGCTTCCEEECCSSC-CCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT
T ss_pred             ccccccCcEeecCcc-cccccch-hhhcCCCCCEEECCCCC-CCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC
Confidence            777888888888888 8887765 67788888888888885 88876  577888888888888888877  67777788


Q ss_pred             CccEEEccCCCcccccC
Q psy16571         83 ELRTIDIAENPIECGCN   99 (150)
Q Consensus        83 ~L~~L~l~~N~~~c~c~   99 (150)
                      +|+.|++++|++.....
T Consensus       534 ~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          534 RLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             TCCEEECTTSGGGGSSS
T ss_pred             CCCEEEecCCcCCCCcc
Confidence            88888888888876543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.31  E-value=8.7e-12  Score=95.04  Aligned_cols=90  Identities=21%  Similarity=0.297  Sum_probs=71.5

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcccc--CcCcC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF--SESML   79 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~l--p~~~~   79 (150)
                      |.+|.++++|++|++++| .++.+++.+|..+++|+.|++++|. +..+++..|..+++|+.|++++|.++.+  |..+.
T Consensus        43 ~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  120 (549)
T 2z81_A           43 HGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP  120 (549)
T ss_dssp             SSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred             hhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCcccccchhhhhh
Confidence            567888888888888888 8888888788888888888888885 8888887788888888888888888743  45555


Q ss_pred             CCCCccEEEccCCC
Q psy16571         80 AWPELRTIDIAENP   93 (150)
Q Consensus        80 ~~~~L~~L~l~~N~   93 (150)
                      .+++|+.|++++|.
T Consensus       121 ~l~~L~~L~L~~n~  134 (549)
T 2z81_A          121 NLTNLQTLRIGNVE  134 (549)
T ss_dssp             TCTTCCEEEEEESS
T ss_pred             ccCCccEEECCCCc
Confidence            66777777777665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.31  E-value=7.6e-12  Score=83.88  Aligned_cols=85  Identities=21%  Similarity=0.275  Sum_probs=44.6

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccc-cCcCcCCCCC
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTS-FSESMLAWPE   83 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~-lp~~~~~~~~   83 (150)
                      +..+++|++|++++| .++.++  .+..+++|+.|++++|. ++...+..+..+++|+.|++++|.++. .+..+..+++
T Consensus        62 l~~l~~L~~L~l~~n-~~~~~~--~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~  137 (197)
T 4ezg_A           62 IEYAHNIKDLTINNI-HATNYN--PISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK  137 (197)
T ss_dssp             GGGCTTCSEEEEESC-CCSCCG--GGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSS
T ss_pred             HhcCCCCCEEEccCC-CCCcch--hhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCC
Confidence            344555555555555 554443  34555555555555553 554334445555555555555555553 3333444555


Q ss_pred             ccEEEccCCC
Q psy16571         84 LRTIDIAENP   93 (150)
Q Consensus        84 L~~L~l~~N~   93 (150)
                      |+.|++++|.
T Consensus       138 L~~L~L~~n~  147 (197)
T 4ezg_A          138 VNSIDLSYNG  147 (197)
T ss_dssp             CCEEECCSCT
T ss_pred             CCEEEccCCC
Confidence            5555555554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.30  E-value=2.7e-12  Score=83.91  Aligned_cols=91  Identities=24%  Similarity=0.241  Sum_probs=79.2

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccch-hhcCCCCCCCeEecCCCCccccCc----C
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFTSFSE----S   77 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~-~~~~~l~~L~~l~l~~n~l~~lp~----~   77 (150)
                      ..|..+++|++|++++| .+....+..+..+++|+.|++++|. ++.++. ..+..+++|+.|++++|.++.+|.    .
T Consensus        65 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  142 (168)
T 2ell_A           65 SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV  142 (168)
T ss_dssp             SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHH
T ss_pred             hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHH
Confidence            35788999999999999 9988666677779999999999996 999864 678899999999999999999887    5


Q ss_pred             cCCCCCccEEEccCCCcc
Q psy16571         78 MLAWPELRTIDIAENPIE   95 (150)
Q Consensus        78 ~~~~~~L~~L~l~~N~~~   95 (150)
                      +..+++|+.|++.+|...
T Consensus       143 ~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          143 FKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             HTTCSSCCEETTEETTSC
T ss_pred             HHhCccCcEecCCCCChh
Confidence            667999999999998764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.30  E-value=2.9e-12  Score=91.79  Aligned_cols=92  Identities=21%  Similarity=0.277  Sum_probs=53.8

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLA   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~   80 (150)
                      |..|.++++|++|++++| .++...+..|..+++|+.|++++|. +....+..+..+++|+.|++++|.++ .+|..+..
T Consensus        94 p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~  171 (313)
T 1ogq_A           94 PPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS  171 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred             ChhHhcCCCCCEEECcCC-eeCCcCCHHHhCCCCCCEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh
Confidence            345555666666666666 5554444455566666666666664 55444444556666666666666665 55555555


Q ss_pred             CC-CccEEEccCCCcc
Q psy16571         81 WP-ELRTIDIAENPIE   95 (150)
Q Consensus        81 ~~-~L~~L~l~~N~~~   95 (150)
                      +. .|+.|++++|.+.
T Consensus       172 l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          172 FSKLFTSMTISRNRLT  187 (313)
T ss_dssp             CCTTCCEEECCSSEEE
T ss_pred             hhhcCcEEECcCCeee
Confidence            54 5666666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.29  E-value=1.2e-11  Score=87.95  Aligned_cols=89  Identities=27%  Similarity=0.372  Sum_probs=40.3

Q ss_pred             ccCccccceeccCCCcCccc-ccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc-CcCCCC
Q psy16571          5 VKGLSYLKRLEITGASNLTR-VRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWP   82 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~-i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~-~~~~~~   82 (150)
                      |.++++|++|++++| .+.. ..+..+..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.++. .+..++
T Consensus       146 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  223 (306)
T 2z66_A          146 FNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN  223 (306)
T ss_dssp             TTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred             cccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence            344444444444444 4433 222334444444444444443 444444444444555555555555544433 222344


Q ss_pred             CccEEEccCCCcc
Q psy16571         83 ELRTIDIAENPIE   95 (150)
Q Consensus        83 ~L~~L~l~~N~~~   95 (150)
                      +|+.|++++|.+.
T Consensus       224 ~L~~L~L~~N~l~  236 (306)
T 2z66_A          224 SLQVLDYSLNHIM  236 (306)
T ss_dssp             TCCEEECTTSCCC
T ss_pred             cCCEeECCCCCCc
Confidence            5555555555443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.29  E-value=7e-12  Score=99.48  Aligned_cols=94  Identities=19%  Similarity=0.172  Sum_probs=84.9

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLA   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~   80 (150)
                      |..|..+..|+.|++++| .+++..+..+..++.|+.|++++|. +++..|..+..+++|+.|+|++|+++ .+|..+..
T Consensus       625 ~~~~~~l~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~  702 (768)
T 3rgz_A          625 SPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGHND-ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA  702 (768)
T ss_dssp             CCSCSSSBCCCEEECCSS-CCBSCCCGGGGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             chhhhccccccEEECcCC-cccccCCHHHhccccCCEEeCcCCc-cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence            456788899999999999 9988777889999999999999996 98877778999999999999999999 78888888


Q ss_pred             CCCccEEEccCCCcccc
Q psy16571         81 WPELRTIDIAENPIECG   97 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c~   97 (150)
                      ++.|+.|++++|++...
T Consensus       703 l~~L~~L~ls~N~l~g~  719 (768)
T 3rgz_A          703 LTMLTEIDLSNNNLSGP  719 (768)
T ss_dssp             CCCCSEEECCSSEEEEE
T ss_pred             CCCCCEEECcCCccccc
Confidence            99999999999998753

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.28  E-value=1.1e-11  Score=81.33  Aligned_cols=71  Identities=31%  Similarity=0.409  Sum_probs=66.1

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcccc
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF   74 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~l   74 (150)
                      |..|.++.+|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.+.-.
T Consensus        47 ~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           47 PGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             TTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             hhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            567999999999999999 9999999999999999999999996 9999998899999999999999988744

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.28  E-value=9.7e-12  Score=83.37  Aligned_cols=91  Identities=22%  Similarity=0.340  Sum_probs=77.8

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCC-ccccCcCcCCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENA-FTSFSESMLAW   81 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~-l~~lp~~~~~~   81 (150)
                      ..|..+++|++|++++| .++...+..+..+++|+.|++++|. +....+..+..+++|+.|++++|. ++.++ .+..+
T Consensus        82 ~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l  158 (197)
T 4ezg_A           82 NPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTL  158 (197)
T ss_dssp             GGGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGC
T ss_pred             hhhhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCC
Confidence            35778899999999999 8888666678899999999999996 888667778899999999999997 88886 56678


Q ss_pred             CCccEEEccCCCccc
Q psy16571         82 PELRTIDIAENPIEC   96 (150)
Q Consensus        82 ~~L~~L~l~~N~~~c   96 (150)
                      ++|+.|++++|.+.-
T Consensus       159 ~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          159 PELKSLNIQFDGVHD  173 (197)
T ss_dssp             SSCCEEECTTBCCCC
T ss_pred             CCCCEEECCCCCCcC
Confidence            899999999998764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.28  E-value=1.5e-11  Score=81.12  Aligned_cols=73  Identities=29%  Similarity=0.356  Sum_probs=67.5

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE   76 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~   76 (150)
                      |..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.+...+.
T Consensus        50 ~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           50 PGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             HHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            567999999999999999 9999999889999999999999996 999999889999999999999999886554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.27  E-value=5.7e-12  Score=86.78  Aligned_cols=90  Identities=21%  Similarity=0.237  Sum_probs=68.4

Q ss_pred             CccccCccccceeccCC-CcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCC---eEecCCC-CccccCc
Q psy16571          2 EKEVKGLSYLKRLEITG-ASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLY---HLNLKEN-AFTSFSE   76 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~-n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~---~l~l~~n-~l~~lp~   76 (150)
                      +.+|.++++|++|++++ | .++.+++..|..+++|+.+++++|. ++.++.  |..+++|+   .+++++| .++.++.
T Consensus        73 ~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~  148 (239)
T 2xwt_C           73 SHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFLGIFNTG-LKMFPD--LTKVYSTDIFFILEITDNPYMTSIPV  148 (239)
T ss_dssp             TTTEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCEEEEEEEC-CCSCCC--CTTCCBCCSEEEEEEESCTTCCEECT
T ss_pred             HhHcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc--cccccccccccEEECCCCcchhhcCc
Confidence            34678888888888887 7 8888888788888888888888885 777664  66677777   7778777 7777776


Q ss_pred             C-cCCCCCcc-EEEccCCCcc
Q psy16571         77 S-MLAWPELR-TIDIAENPIE   95 (150)
Q Consensus        77 ~-~~~~~~L~-~L~l~~N~~~   95 (150)
                      . +..+++|+ .|++++|.+.
T Consensus       149 ~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          149 NAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             TTTTTTBSSEEEEECCSCCCC
T ss_pred             ccccchhcceeEEEcCCCCCc
Confidence            5 33467777 7777777765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.27  E-value=1.9e-11  Score=87.91  Aligned_cols=85  Identities=21%  Similarity=0.373  Sum_probs=48.7

Q ss_pred             ccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEEc
Q psy16571         10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI   89 (150)
Q Consensus        10 ~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~l   89 (150)
                      +|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.+|..+..+++|+.|++
T Consensus       193 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l  270 (330)
T 1xku_A          193 SLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL  270 (330)
T ss_dssp             TCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEEC
T ss_pred             cCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEEC
Confidence            3444444444 4555544555556666666666664 5555555555556666666666666666655555666666666


Q ss_pred             cCCCccc
Q psy16571         90 AENPIEC   96 (150)
Q Consensus        90 ~~N~~~c   96 (150)
                      ++|++..
T Consensus       271 ~~N~i~~  277 (330)
T 1xku_A          271 HNNNISA  277 (330)
T ss_dssp             CSSCCCC
T ss_pred             CCCcCCc
Confidence            6665543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.27  E-value=1.2e-11  Score=94.90  Aligned_cols=88  Identities=22%  Similarity=0.281  Sum_probs=50.3

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccC--cCcCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS--ESMLA   80 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp--~~~~~   80 (150)
                      .+|.++++|++|++++| .++.+++.+|.++++|+.|++++|. ++.++..   .+++|+.|++++|.+..++  ..+..
T Consensus        70 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~  144 (562)
T 3a79_B           70 PDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGN  144 (562)
T ss_dssp             GGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSC-CCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGG
T ss_pred             hhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc---ccccCCEEECCCCCccccCchHhhcc
Confidence            35555566666666665 5665555555556666666666664 5555443   4555666666666665543  34445


Q ss_pred             CCCccEEEccCCCcc
Q psy16571         81 WPELRTIDIAENPIE   95 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~   95 (150)
                      +++|+.|++++|.+.
T Consensus       145 l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          145 LTKLTFLGLSAAKFR  159 (562)
T ss_dssp             CTTCCEEEEECSBCC
T ss_pred             cCcccEEecCCCccc
Confidence            566666666666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.27  E-value=7.5e-12  Score=98.89  Aligned_cols=90  Identities=22%  Similarity=0.286  Sum_probs=73.5

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWP   82 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~   82 (150)
                      ..+.++.+|++|+|++| .++.++. .|..+++|+.|+|++|. ++.++. .|..+++|+.|+|++|.|+.+|..+..++
T Consensus       241 ~~~~~l~~L~~L~Ls~N-~l~~lp~-~~~~l~~L~~L~Ls~N~-l~~lp~-~~~~l~~L~~L~L~~N~l~~lp~~~~~l~  316 (727)
T 4b8c_D          241 ANIFKYDFLTRLYLNGN-SLTELPA-EIKNLSNLRVLDLSHNR-LTSLPA-ELGSCFQLKYFYFFDNMVTTLPWEFGNLC  316 (727)
T ss_dssp             GGGGGCCSCSCCBCTTS-CCSCCCG-GGGGGTTCCEEECTTSC-CSSCCS-SGGGGTTCSEEECCSSCCCCCCSSTTSCT
T ss_pred             hhhcCCCCCCEEEeeCC-cCcccCh-hhhCCCCCCEEeCcCCc-CCccCh-hhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence            34446778888888888 8887764 57788888999998886 887754 46788899999999999999988888899


Q ss_pred             CccEEEccCCCccc
Q psy16571         83 ELRTIDIAENPIEC   96 (150)
Q Consensus        83 ~L~~L~l~~N~~~c   96 (150)
                      +|+.|+|++|++..
T Consensus       317 ~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          317 NLQFLGVEGNPLEK  330 (727)
T ss_dssp             TCCCEECTTSCCCS
T ss_pred             CccEEeCCCCccCC
Confidence            99999999999875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.26  E-value=1.7e-11  Score=88.27  Aligned_cols=86  Identities=21%  Similarity=0.307  Sum_probs=68.2

Q ss_pred             cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEE
Q psy16571          9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTID   88 (150)
Q Consensus         9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~   88 (150)
                      ++|++|++++| .++.+++..|..+++|+.|++++|. +..+++..|..+++|+.|++++|.++.+|..+..+++|+.|+
T Consensus       193 ~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~  270 (332)
T 2ft3_A          193 ETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVY  270 (332)
T ss_dssp             SSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEE
T ss_pred             CCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEE
Confidence            46777777777 7777777777888888888888885 888777777778888888888888888887777788888888


Q ss_pred             ccCCCccc
Q psy16571         89 IAENPIEC   96 (150)
Q Consensus        89 l~~N~~~c   96 (150)
                      +++|++..
T Consensus       271 l~~N~l~~  278 (332)
T 2ft3_A          271 LHTNNITK  278 (332)
T ss_dssp             CCSSCCCB
T ss_pred             CCCCCCCc
Confidence            88888765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.26  E-value=3.4e-11  Score=86.53  Aligned_cols=92  Identities=21%  Similarity=0.354  Sum_probs=81.4

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC-
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~-   80 (150)
                      +..|.++++|+.|++++| .++.+++..+..+++|+.|++++|. +..++.. +..+++|+.|++++|.++.++...+. 
T Consensus       209 ~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~-l~~l~~L~~L~l~~N~i~~~~~~~f~~  285 (330)
T 1xku_A          209 AASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNK-LVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCP  285 (330)
T ss_dssp             TGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSC-CSSCCTT-TTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             HHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCc-CccCChh-hccCCCcCEEECCCCcCCccChhhcCC
Confidence            567889999999999999 9999998889999999999999996 9988764 67899999999999999999876653 


Q ss_pred             ------CCCccEEEccCCCccc
Q psy16571         81 ------WPELRTIDIAENPIEC   96 (150)
Q Consensus        81 ------~~~L~~L~l~~N~~~c   96 (150)
                            ...+..+++.+|++.+
T Consensus       286 ~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          286 PGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             SSCCTTSCCCSEEECCSSSSCG
T ss_pred             cccccccccccceEeecCcccc
Confidence                  3678899999999875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.25  E-value=5.9e-12  Score=90.18  Aligned_cols=92  Identities=17%  Similarity=0.198  Sum_probs=76.6

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLA   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~   80 (150)
                      |..|..+. |++|++++| .++...+..|..+++|+.|++++|. +....+. +..+++|+.|++++|.++ .+|..+..
T Consensus       191 ~~~~~~l~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~  266 (313)
T 1ogq_A          191 PPTFANLN-LAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQ  266 (313)
T ss_dssp             CGGGGGCC-CSEEECCSS-EEEECCGGGCCTTSCCSEEECCSSE-ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             ChHHhCCc-ccEEECcCC-cccCcCCHHHhcCCCCCEEECCCCc-eeeecCc-ccccCCCCEEECcCCcccCcCChHHhc
Confidence            55677776 999999998 8888888888899999999999996 8766665 677889999999999998 67777778


Q ss_pred             CCCccEEEccCCCcccc
Q psy16571         81 WPELRTIDIAENPIECG   97 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c~   97 (150)
                      +++|+.|++++|++...
T Consensus       267 l~~L~~L~Ls~N~l~~~  283 (313)
T 1ogq_A          267 LKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             CTTCCEEECCSSEEEEE
T ss_pred             CcCCCEEECcCCccccc
Confidence            88999999999988743

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.24  E-value=3.7e-11  Score=86.43  Aligned_cols=88  Identities=23%  Similarity=0.406  Sum_probs=50.3

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAW   81 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~   81 (150)
                      .+|.++++|++|++++| .++.+.+..|..+++|+.|++++|. +..++...+   ++|+.|++++|.+..++.. +..+
T Consensus        72 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l  146 (332)
T 2ft3_A           72 DDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGL  146 (332)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSC
T ss_pred             hHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc---ccCCEEECCCCccCccCHhHhCCC
Confidence            34555556666666665 5555555555556666666666553 555544322   4555566666666555543 3346


Q ss_pred             CCccEEEccCCCcc
Q psy16571         82 PELRTIDIAENPIE   95 (150)
Q Consensus        82 ~~L~~L~l~~N~~~   95 (150)
                      ++|+.|++++|.+.
T Consensus       147 ~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          147 RNMNCIEMGGNPLE  160 (332)
T ss_dssp             SSCCEEECCSCCCB
T ss_pred             ccCCEEECCCCccc
Confidence            66777777776664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.23  E-value=1.1e-11  Score=97.87  Aligned_cols=90  Identities=20%  Similarity=0.244  Sum_probs=77.6

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW   81 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~   81 (150)
                      +..|..+..|+.|++++| .+..++...+ .+++|+.|+|++|. ++.++. .|..+++|+.|+|++|.|+.+|..+..+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~-~l~~L~~L~Ls~N~-l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp~~~~~l  292 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNL-QIFNISANIF-KYDFLTRLYLNGNS-LTELPA-EIKNLSNLRVLDLSHNRLTSLPAELGSC  292 (727)
T ss_dssp             -----CCCCCCEEECTTS-CCSCCCGGGG-GCCSCSCCBCTTSC-CSCCCG-GGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred             hhhhccCCCCcEEECCCC-CCCCCChhhc-CCCCCCEEEeeCCc-CcccCh-hhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence            567888999999999999 9999987666 79999999999996 997764 5788999999999999999999999999


Q ss_pred             CCccEEEccCCCcc
Q psy16571         82 PELRTIDIAENPIE   95 (150)
Q Consensus        82 ~~L~~L~l~~N~~~   95 (150)
                      ++|+.|+|++|.+.
T Consensus       293 ~~L~~L~L~~N~l~  306 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT  306 (727)
T ss_dssp             TTCSEEECCSSCCC
T ss_pred             CCCCEEECCCCCCC
Confidence            99999999999775

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.23  E-value=2.5e-11  Score=94.76  Aligned_cols=90  Identities=26%  Similarity=0.358  Sum_probs=48.8

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc-CcCCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAW   81 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~-~~~~~   81 (150)
                      .+|.++++|++|++++| .++.+++.+|..+++|+.|++++|. +..+++..|..+++|+.|++++|.+..++. .+..+
T Consensus        67 ~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  144 (680)
T 1ziw_A           67 ELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL  144 (680)
T ss_dssp             THHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCC
T ss_pred             HHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhccc
Confidence            34445555555555555 5555555555555555555555553 555555555555556666665555554332 23345


Q ss_pred             CCccEEEccCCCc
Q psy16571         82 PELRTIDIAENPI   94 (150)
Q Consensus        82 ~~L~~L~l~~N~~   94 (150)
                      ++|+.|++++|.+
T Consensus       145 ~~L~~L~L~~n~l  157 (680)
T 1ziw_A          145 ENLQELLLSNNKI  157 (680)
T ss_dssp             TTCCEEECCSSCC
T ss_pred             ccCCEEEccCCcc
Confidence            5555555555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.23  E-value=2.6e-11  Score=87.37  Aligned_cols=88  Identities=18%  Similarity=0.291  Sum_probs=62.4

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCCCCC
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLAWPE   83 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~~~~   83 (150)
                      |.++++|++|++++| .++.++. .+..+++|+.|++++|. +..+++. +..+++|+.|++++|.+. .+|..+..+++
T Consensus       179 ~~~l~~L~~L~L~~n-~l~~lp~-~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~  254 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWT-GIRSLPA-SIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAP  254 (328)
T ss_dssp             EEESTTCCEEEEEEE-CCCCCCG-GGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred             hccCCCCCEEECcCC-CcCcchH-hhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence            455777888888887 7776654 46777778888888775 7776653 667777888888776655 56666666777


Q ss_pred             ccEEEccCCCccc
Q psy16571         84 LRTIDIAENPIEC   96 (150)
Q Consensus        84 L~~L~l~~N~~~c   96 (150)
                      |+.|++++|.+.-
T Consensus       255 L~~L~L~~n~~~~  267 (328)
T 4fcg_A          255 LKRLILKDCSNLL  267 (328)
T ss_dssp             CCEEECTTCTTCC
T ss_pred             CCEEECCCCCchh
Confidence            7777777766543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.23  E-value=2.5e-11  Score=92.09  Aligned_cols=87  Identities=28%  Similarity=0.344  Sum_probs=49.4

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccc--cCcCcCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTS--FSESMLAW   81 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~--lp~~~~~~   81 (150)
                      +|.++++|++|++++| .++.+.+..|..+++|++|++++|. ++.++..   .+++|+.|++++|.++.  +|..+..+
T Consensus        40 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l  114 (520)
T 2z7x_B           40 DILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK-LVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNM  114 (520)
T ss_dssp             HHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGC
T ss_pred             hccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc-eeecCcc---ccCCccEEeccCCccccccchhhhccC
Confidence            4555555666666665 5555555555556666666666654 5555443   45556666666666554  33445555


Q ss_pred             CCccEEEccCCCcc
Q psy16571         82 PELRTIDIAENPIE   95 (150)
Q Consensus        82 ~~L~~L~l~~N~~~   95 (150)
                      ++|+.|++++|.+.
T Consensus       115 ~~L~~L~L~~n~l~  128 (520)
T 2z7x_B          115 SQLKFLGLSTTHLE  128 (520)
T ss_dssp             TTCCEEEEEESSCC
T ss_pred             CcceEEEecCcccc
Confidence            66666666666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.22  E-value=2.5e-11  Score=96.30  Aligned_cols=99  Identities=20%  Similarity=0.170  Sum_probs=73.9

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLA   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~   80 (150)
                      |..|..+++|+.|++++| .+.+..+..+..+++|+.|++++|. +....+..+..+++|+.|++++|.+. .+|..+..
T Consensus       459 p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~  536 (768)
T 3rgz_A          459 PQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNR-LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD  536 (768)
T ss_dssp             CGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred             CHHHcCCCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccCCc-cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence            445666777777777777 7776666667777788888888875 77666666777888888888888887 57777777


Q ss_pred             CCCccEEEccCCCcccccChHH
Q psy16571         81 WPELRTIDIAENPIECGCNILW  102 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c~c~~~~  102 (150)
                      +++|+.|++++|++.+.+...+
T Consensus       537 l~~L~~L~Ls~N~l~g~ip~~~  558 (768)
T 3rgz_A          537 CRSLIWLDLNTNLFNGTIPAAM  558 (768)
T ss_dssp             CTTCCEEECCSSEEESBCCGGG
T ss_pred             CCCCCEEECCCCccCCcCChHH
Confidence            8888888888888887766544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.21  E-value=5e-11  Score=95.48  Aligned_cols=94  Identities=22%  Similarity=0.231  Sum_probs=64.3

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccch--hhcCCCCCCCeEecCCCCccccC--cC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE--DALVGLPNLYHLNLKENAFTSFS--ES   77 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~--~~~~~l~~L~~l~l~~n~l~~lp--~~   77 (150)
                      |.+|.++++|++|++++| .+..+.+..|.++++|+.|++++|. +....+  ..|..+++|+.|+|++|.+..++  ..
T Consensus        66 ~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~  143 (844)
T 3j0a_A           66 KEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS  143 (844)
T ss_dssp             TTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGG
T ss_pred             HHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcccccccchh
Confidence            456777777777777777 7777766677777777777777775 665222  23667777777777777776553  24


Q ss_pred             cCCCCCccEEEccCCCcccc
Q psy16571         78 MLAWPELRTIDIAENPIECG   97 (150)
Q Consensus        78 ~~~~~~L~~L~l~~N~~~c~   97 (150)
                      +.++++|+.|++++|.+...
T Consensus       144 ~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A          144 FGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             GGTCSSCCEEEEESSCCCCC
T ss_pred             HhhCCCCCEEECCCCcCCee
Confidence            55677788888888777554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.16  E-value=7.1e-11  Score=75.59  Aligned_cols=85  Identities=21%  Similarity=0.224  Sum_probs=73.2

Q ss_pred             CccccceeccCCCcCcc--cccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccc-cCcCcCCCCC
Q psy16571          7 GLSYLKRLEITGASNLT--RVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTS-FSESMLAWPE   83 (150)
Q Consensus         7 ~l~~L~~L~l~~n~~l~--~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~-lp~~~~~~~~   83 (150)
                      ..++|+.|++++| .++  .++. .+..+++|+.|++++|. ++.+  ..+..+++|+.|++++|.++. +|..+..+++
T Consensus        15 ~~~~l~~L~l~~n-~l~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   89 (149)
T 2je0_A           15 TPSDVKELVLDNS-RSNEGKLEG-LTDEFEELEFLSTINVG-LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN   89 (149)
T ss_dssp             CGGGCSEEECTTC-BCBTTBCCS-CCTTCTTCCEEECTTSC-CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred             CCccCeEEEccCC-cCChhHHHH-HHhhcCCCcEEECcCCC-CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence            4478999999999 888  5654 77889999999999996 9888  568899999999999999997 6665555899


Q ss_pred             ccEEEccCCCccc
Q psy16571         84 LRTIDIAENPIEC   96 (150)
Q Consensus        84 L~~L~l~~N~~~c   96 (150)
                      |+.|++++|.+.-
T Consensus        90 L~~L~ls~N~i~~  102 (149)
T 2je0_A           90 LTHLNLSGNKIKD  102 (149)
T ss_dssp             CCEEECTTSCCCS
T ss_pred             CCEEECCCCcCCC
Confidence            9999999998764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.16  E-value=4.1e-11  Score=85.82  Aligned_cols=90  Identities=18%  Similarity=0.180  Sum_probs=61.2

Q ss_pred             ccccCccccceeccCCCcCcccccCccc-CCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAF-ADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW   81 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~-~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~   81 (150)
                      ..|.++++|++|++++| .++.+++..+ ..+++|+.|++++|. ++.++..  ..+++|+.|++++|.++.+|..+..+
T Consensus       138 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l  213 (317)
T 3o53_A          138 LDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEFQSA  213 (317)
T ss_dssp             BCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC--CCCTTCCEEECCSSCCCEECGGGGGG
T ss_pred             hhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Ccccccc--cccccCCEEECCCCcCCcchhhhccc
Confidence            35566667777777777 7766655444 356777777777774 7666443  24677777777777777777766667


Q ss_pred             CCccEEEccCCCccc
Q psy16571         82 PELRTIDIAENPIEC   96 (150)
Q Consensus        82 ~~L~~L~l~~N~~~c   96 (150)
                      ++|+.|++++|.+..
T Consensus       214 ~~L~~L~L~~N~l~~  228 (317)
T 3o53_A          214 AGVTWISLRNNKLVL  228 (317)
T ss_dssp             TTCSEEECTTSCCCE
T ss_pred             CcccEEECcCCcccc
Confidence            778888888777653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.15  E-value=6e-11  Score=84.81  Aligned_cols=89  Identities=19%  Similarity=0.233  Sum_probs=66.6

Q ss_pred             ccCccccceeccCCCcCccc---ccCcccCCCCCCCEEeCCCCCCCCccch-hhcCCCCCCCeEecCCCCccccCcCcCC
Q psy16571          5 VKGLSYLKRLEITGASNLTR---VRKGAFADNLNLETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFTSFSESMLA   80 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~---i~~~~~~~l~~L~~l~l~~n~~l~~~~~-~~~~~l~~L~~l~l~~n~l~~lp~~~~~   80 (150)
                      |.++++|++|++++| .++.   ++...+..+++|+.|++++|. +....+ ..+..+++|+.|++++|.++.+|..++ 
T Consensus       197 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-  273 (312)
T 1wwl_A          197 PLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-  273 (312)
T ss_dssp             TTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-
T ss_pred             hccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCccChhhhhcc-
Confidence            377888888888888 8873   334455667888888888885 777553 445567888888888888888887666 


Q ss_pred             CCCccEEEccCCCcccc
Q psy16571         81 WPELRTIDIAENPIECG   97 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c~   97 (150)
                       ++|+.|++++|.+.-.
T Consensus       274 -~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             -SEEEEEECCSSCCCSC
T ss_pred             -CCceEEECCCCCCCCC
Confidence             6788888888877654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.14  E-value=9.5e-11  Score=84.56  Aligned_cols=89  Identities=26%  Similarity=0.277  Sum_probs=66.4

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccC-cCcCCCCC
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS-ESMLAWPE   83 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp-~~~~~~~~   83 (150)
                      +..+++|++|++++| .++.++  .+..+++|+.+++++|. ++.++  .+..+++|+.|++++|.+...+ ..+..+++
T Consensus       239 ~~~l~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  312 (347)
T 4fmz_A          239 LANLSQLTWLEIGTN-QISDIN--AVKDLTKLKMLNVGSNQ-ISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN  312 (347)
T ss_dssp             GTTCTTCCEEECCSS-CCCCCG--GGTTCTTCCEEECCSSC-CCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred             hhcCCCCCEEECCCC-ccCCCh--hHhcCCCcCEEEccCCc-cCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence            667788888888888 877764  47778888888888885 77763  3567788888888888887544 34556788


Q ss_pred             ccEEEccCCCcccccC
Q psy16571         84 LRTIDIAENPIECGCN   99 (150)
Q Consensus        84 L~~L~l~~N~~~c~c~   99 (150)
                      |+.|++++|++.....
T Consensus       313 L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          313 LTTLFLSQNHITDIRP  328 (347)
T ss_dssp             CSEEECCSSSCCCCGG
T ss_pred             CCEEEccCCccccccC
Confidence            8888888888776544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.13  E-value=5.3e-11  Score=90.08  Aligned_cols=91  Identities=18%  Similarity=0.188  Sum_probs=63.2

Q ss_pred             CccccCccccceeccCCCcCcccccCcccC-CCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFA-DNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~-~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~   80 (150)
                      |..|.++++|+.|++++| .++.+++..+. .+++|+.|++++|. ++.+++.  ..+++|+.|+|++|.++.+|..+..
T Consensus       137 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~  212 (487)
T 3oja_A          137 DLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEFQS  212 (487)
T ss_dssp             GBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC--CCCTTCCEEECCSSCCCEECGGGGG
T ss_pred             chhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc-ccccccc--ccCCCCCEEECCCCCCCCCCHhHcC
Confidence            345666677777777777 77665555554 56777777777775 7766443  3477778888888888777777666


Q ss_pred             CCCccEEEccCCCccc
Q psy16571         81 WPELRTIDIAENPIEC   96 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c   96 (150)
                      +++|+.|++++|.+..
T Consensus       213 l~~L~~L~Ls~N~l~~  228 (487)
T 3oja_A          213 AAGVTWISLRNNKLVL  228 (487)
T ss_dssp             GTTCSEEECTTSCCCE
T ss_pred             CCCccEEEecCCcCcc
Confidence            7788888888887653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.12  E-value=1.5e-10  Score=82.18  Aligned_cols=86  Identities=23%  Similarity=0.361  Sum_probs=59.4

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE   83 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~   83 (150)
                      .+.++++|++|++++| .++.++  .+..+++|+.|++++|. ++.+  ..+..+++|+.|++++|.++.++. +..+++
T Consensus       107 ~l~~l~~L~~L~L~~n-~i~~~~--~l~~l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~  179 (291)
T 1h6t_A          107 SLKDLKKLKSLSLEHN-GISDIN--GLVHLPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTK  179 (291)
T ss_dssp             GGTTCTTCCEEECTTS-CCCCCG--GGGGCTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTT
T ss_pred             hhccCCCCCEEECCCC-cCCCCh--hhcCCCCCCEEEccCCc-CCcc--hhhccCCCCCEEEccCCccccchh-hcCCCc
Confidence            3566777777777777 777763  36667777777777775 7666  245667777777777777776655 555677


Q ss_pred             ccEEEccCCCccc
Q psy16571         84 LRTIDIAENPIEC   96 (150)
Q Consensus        84 L~~L~l~~N~~~c   96 (150)
                      |+.|++++|.+..
T Consensus       180 L~~L~L~~N~i~~  192 (291)
T 1h6t_A          180 LQNLYLSKNHISD  192 (291)
T ss_dssp             CCEEECCSSCCCB
T ss_pred             cCEEECCCCcCCC
Confidence            7777777776654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.12  E-value=2.1e-10  Score=89.38  Aligned_cols=85  Identities=18%  Similarity=0.303  Sum_probs=37.7

Q ss_pred             CccccceeccCCCcCcccccCcccCCCCCCCEEeCC------CCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC
Q psy16571          7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLN------KNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA   80 (150)
Q Consensus         7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~------~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~   80 (150)
                      .+++|+.|++++| .++.++. .+..+++|+.|+++      +|. +....+..+..+++|+.|+|++|.+..+|..+. 
T Consensus       511 ~l~~L~~L~Ls~N-~l~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~-  586 (636)
T 4eco_A          511 TLPYLVGIDLSYN-SFSKFPT-QPLNSSTLKGFGIRNQRDAQGNR-TLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT-  586 (636)
T ss_dssp             TCTTCCEEECCSS-CCSSCCC-GGGGCSSCCEEECCSCBCTTCCB-CCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC-
T ss_pred             cCCCcCEEECCCC-CCCCcCh-hhhcCCCCCEEECCCCcccccCc-ccccChHHHhcCCCCCEEECCCCcCCccCHhHh-
Confidence            3444444444444 4444332 23334444444442      232 333333334444555555555555555554433 


Q ss_pred             CCCccEEEccCCCccc
Q psy16571         81 WPELRTIDIAENPIEC   96 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c   96 (150)
                       ++|+.|++++|++.|
T Consensus       587 -~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          587 -PNISVLDIKDNPNIS  601 (636)
T ss_dssp             -TTCCEEECCSCTTCE
T ss_pred             -CcCCEEECcCCCCcc
Confidence             455555555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.12  E-value=9.3e-11  Score=83.81  Aligned_cols=92  Identities=13%  Similarity=0.079  Sum_probs=73.4

Q ss_pred             CccccCccccceeccCCCcCcccc---c-CcccCCCCCCCEEeCCCCCCCCcc---chhhcCCCCCCCeEecCCCCcccc
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRV---R-KGAFADNLNLETLTLNKNPKLKII---EEDALVGLPNLYHLNLKENAFTSF   74 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i---~-~~~~~~l~~L~~l~l~~n~~l~~~---~~~~~~~l~~L~~l~l~~n~l~~l   74 (150)
                      |..|.++++|++|++++| .+.+.   + ...+..+++|+.|++++|. ++.+   +...+..+++|+.|++++|.+...
T Consensus       166 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  243 (312)
T 1wwl_A          166 CEQVRVFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDA  243 (312)
T ss_dssp             TTTCCCCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred             HHHhccCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence            467899999999999999 76542   2 2234789999999999996 9844   345556789999999999999975


Q ss_pred             C--cCcCCCCCccEEEccCCCcc
Q psy16571         75 S--ESMLAWPELRTIDIAENPIE   95 (150)
Q Consensus        75 p--~~~~~~~~L~~L~l~~N~~~   95 (150)
                      +  ..+..+++|+.|++++|.+.
T Consensus       244 ~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          244 AGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             CCCSCCCCCTTCCEEECTTSCCS
T ss_pred             cchhhhhhcCCCCEEECCCCccC
Confidence            5  23444789999999999987

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.11  E-value=3.1e-10  Score=81.06  Aligned_cols=35  Identities=37%  Similarity=0.524  Sum_probs=13.6

Q ss_pred             CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCC
Q psy16571          7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN   44 (150)
Q Consensus         7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n   44 (150)
                      ++++|++|++++| .++.+++  +..+++|+.|++++|
T Consensus       105 ~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n  139 (308)
T 1h6u_A          105 GLQSIKTLDLTST-QITDVTP--LAGLSNLQVLYLDLN  139 (308)
T ss_dssp             TCTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCC-CCCCchh--hcCCCCCCEEECCCC
Confidence            3333444444443 3333322  333444444444444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.11  E-value=1.1e-10  Score=83.38  Aligned_cols=88  Identities=16%  Similarity=0.237  Sum_probs=63.0

Q ss_pred             ccCccccceeccCCCcCcccccCc---ccCCCCCCCEEeCCCCCCCCccchhhcCCC---CCCCeEecCCCCccccCcCc
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKG---AFADNLNLETLTLNKNPKLKIIEEDALVGL---PNLYHLNLKENAFTSFSESM   78 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~---~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l---~~L~~l~l~~n~l~~lp~~~   78 (150)
                      +..+++|++|++++| .++.++..   .+..+++|+.|++++|. ++.+.+..+..+   ++|+.|++++|.++.+|..+
T Consensus       193 ~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~  270 (310)
T 4glp_A          193 PHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL  270 (310)
T ss_dssp             TTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC
T ss_pred             hhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCCCchhhhh
Confidence            356778888888888 77655432   34567788888888885 777644334443   68888888888888887766


Q ss_pred             CCCCCccEEEccCCCccc
Q psy16571         79 LAWPELRTIDIAENPIEC   96 (150)
Q Consensus        79 ~~~~~L~~L~l~~N~~~c   96 (150)
                      +  ++|+.|++++|.+.-
T Consensus       271 ~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          271 P--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             C--SCCSCEECCSCCCCS
T ss_pred             c--CCCCEEECCCCcCCC
Confidence            4  678888888887764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.10  E-value=4.2e-10  Score=80.36  Aligned_cols=83  Identities=25%  Similarity=0.403  Sum_probs=43.0

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCc
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPEL   84 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L   84 (150)
                      +..+++|++|++++| .++.+++  +..+++|+.|++++|. ++.++  .+..+++|+.|++++|.++.++. +..+++|
T Consensus        59 ~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~--~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L  131 (308)
T 1h6u_A           59 VQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNP-LKNVS--AIAGLQSIKTLDLTSTQITDVTP-LAGLSNL  131 (308)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCC-CSCCG--GGTTCTTCCEEECTTSCCCCCGG-GTTCTTC
T ss_pred             hhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCc-CCCch--hhcCCCCCCEEECCCCCCCCchh-hcCCCCC
Confidence            444555566666655 5555554  5555555555555553 55543  24445555555555555554443 3334444


Q ss_pred             cEEEccCCCc
Q psy16571         85 RTIDIAENPI   94 (150)
Q Consensus        85 ~~L~l~~N~~   94 (150)
                      +.|++++|.+
T Consensus       132 ~~L~l~~n~l  141 (308)
T 1h6u_A          132 QVLYLDLNQI  141 (308)
T ss_dssp             CEEECCSSCC
T ss_pred             CEEECCCCcc
Confidence            4444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.10  E-value=2.6e-10  Score=87.86  Aligned_cols=84  Identities=25%  Similarity=0.273  Sum_probs=74.0

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccc-hhhcCCCCCCCeEecCCCCccccCcCcCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIE-EDALVGLPNLYHLNLKENAFTSFSESMLA   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~-~~~~~~l~~L~~l~l~~n~l~~lp~~~~~   80 (150)
                      |..|.++++|+.|++++| .++.++  .+..+++|+.|++++|. ++.+. +..+..+++|+.|+|++|.++.+|+....
T Consensus       479 p~~~~~l~~L~~L~Ls~N-~l~~lp--~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~  554 (567)
T 1dce_A          479 PPALAALRCLEVLQASDN-ALENVD--GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER  554 (567)
T ss_dssp             CGGGGGCTTCCEEECCSS-CCCCCG--GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred             chhhhcCCCCCEEECCCC-CCCCCc--ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence            678999999999999999 999987  68999999999999996 99986 77789999999999999999998875543


Q ss_pred             ----CCCccEEEc
Q psy16571         81 ----WPELRTIDI   89 (150)
Q Consensus        81 ----~~~L~~L~l   89 (150)
                          +++|+.|++
T Consensus       555 l~~~lp~L~~L~l  567 (567)
T 1dce_A          555 LAEMLPSVSSILT  567 (567)
T ss_dssp             HHHHCTTCSEEEC
T ss_pred             HHHHCcccCccCC
Confidence                678888753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.10  E-value=3.6e-10  Score=79.05  Aligned_cols=88  Identities=25%  Similarity=0.365  Sum_probs=42.9

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchh-------------------hcCCCCCCCeEe
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEED-------------------ALVGLPNLYHLN   65 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~-------------------~~~~l~~L~~l~   65 (150)
                      +..+++|+.|++++| .++.+++  +..+++|+.|++++|. ++.++..                   .+..+++|+.|+
T Consensus        59 l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~  134 (263)
T 1xeu_A           59 MQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNR-LKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILS  134 (263)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEE
T ss_pred             HhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCc-cCCcCccccCcccEEEccCCccCCChhhcCcccccEEE
Confidence            344445555555555 5554443  4445555555555443 4443321                   234455555555


Q ss_pred             cCCCCccccCcCcCCCCCccEEEccCCCcccc
Q psy16571         66 LKENAFTSFSESMLAWPELRTIDIAENPIECG   97 (150)
Q Consensus        66 l~~n~l~~lp~~~~~~~~L~~L~l~~N~~~c~   97 (150)
                      +++|.++.++ .+..+++|+.|++++|.+...
T Consensus       135 Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          135 IRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCCcCCCCh-HHccCCCCCEEECCCCcCcch
Confidence            5555555543 233455555555555555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.10  E-value=1.4e-10  Score=90.34  Aligned_cols=87  Identities=21%  Similarity=0.294  Sum_probs=44.6

Q ss_pred             CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCC-------CCCeEecCCCCccccCcCcC
Q psy16571          7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLP-------NLYHLNLKENAFTSFSESML   79 (150)
Q Consensus         7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~-------~L~~l~l~~n~l~~lp~~~~   79 (150)
                      .+.+|+.|++++| .++.++...+..+++|+.|++++|. ++.++...+....       +|+.|++++|.++.+|..++
T Consensus       431 ~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~  508 (636)
T 4eco_A          431 KGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR  508 (636)
T ss_dssp             CCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS
T ss_pred             cCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCcCCccChhhh
Confidence            3345555555555 5555555444445555555555553 5544444333222       45555555555555555444


Q ss_pred             --CCCCccEEEccCCCcc
Q psy16571         80 --AWPELRTIDIAENPIE   95 (150)
Q Consensus        80 --~~~~L~~L~l~~N~~~   95 (150)
                        .+++|+.|++++|.+.
T Consensus       509 ~~~l~~L~~L~Ls~N~l~  526 (636)
T 4eco_A          509 ATTLPYLVGIDLSYNSFS  526 (636)
T ss_dssp             TTTCTTCCEEECCSSCCS
T ss_pred             hccCCCcCEEECCCCCCC
Confidence              4555555555555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.10  E-value=2.7e-10  Score=82.11  Aligned_cols=92  Identities=20%  Similarity=0.159  Sum_probs=80.2

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLA   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~   80 (150)
                      |..|.++++|++|++++| .++.+++ .+..+++|+.|++++|. +....+..|..+++|+.|++++|.+. .+|..+..
T Consensus       199 p~~l~~l~~L~~L~L~~N-~l~~l~~-~l~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~  275 (328)
T 4fcg_A          199 PASIANLQNLKSLKIRNS-PLSALGP-AIHHLPKLEELDLRGCT-ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR  275 (328)
T ss_dssp             CGGGGGCTTCCEEEEESS-CCCCCCG-GGGGCTTCCEEECTTCT-TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred             hHhhcCCCCCCEEEccCC-CCCcCch-hhccCCCCCEEECcCCc-chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc
Confidence            567889999999999999 9998886 58889999999999986 76666677889999999999998665 78888888


Q ss_pred             CCCccEEEccCCCccc
Q psy16571         81 WPELRTIDIAENPIEC   96 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c   96 (150)
                      +++|+.|++++|++..
T Consensus       276 l~~L~~L~L~~n~~~~  291 (328)
T 4fcg_A          276 LTQLEKLDLRGCVNLS  291 (328)
T ss_dssp             CTTCCEEECTTCTTCC
T ss_pred             CCCCCEEeCCCCCchh
Confidence            9999999999988755

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.09  E-value=4.2e-10  Score=79.80  Aligned_cols=84  Identities=26%  Similarity=0.377  Sum_probs=47.0

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCc
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPEL   84 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L   84 (150)
                      +.++++|++|++++| .++.++.  +..+++|+.|++++|. +..++  .+..+++|+.|++++|.++.+ ..+..+++|
T Consensus        86 l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~n~-i~~~~--~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L  158 (291)
T 1h6t_A           86 LANLKNLGWLFLDEN-KVKDLSS--LKDLKKLKSLSLEHNG-ISDIN--GLVHLPQLESLYLGNNKITDI-TVLSRLTKL  158 (291)
T ss_dssp             GTTCTTCCEEECCSS-CCCCGGG--GTTCTTCCEEECTTSC-CCCCG--GGGGCTTCCEEECCSSCCCCC-GGGGGCTTC
T ss_pred             cccCCCCCEEECCCC-cCCCChh--hccCCCCCEEECCCCc-CCCCh--hhcCCCCCCEEEccCCcCCcc-hhhccCCCC
Confidence            445555666666665 5555442  5556666666666664 55542  244556666666666666555 334445566


Q ss_pred             cEEEccCCCcc
Q psy16571         85 RTIDIAENPIE   95 (150)
Q Consensus        85 ~~L~l~~N~~~   95 (150)
                      +.|++++|.+.
T Consensus       159 ~~L~L~~N~l~  169 (291)
T 1h6t_A          159 DTLSLEDNQIS  169 (291)
T ss_dssp             SEEECCSSCCC
T ss_pred             CEEEccCCccc
Confidence            66666666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.09  E-value=3.8e-10  Score=81.58  Aligned_cols=82  Identities=21%  Similarity=0.296  Sum_probs=71.7

Q ss_pred             ceeccCCCcCcccccCcccCCCCCCCEEeCCC-CCCCCccchhhcCCCCCCCeEecCCCCccccCcCc-CCCCCccEEEc
Q psy16571         12 KRLEITGASNLTRVRKGAFADNLNLETLTLNK-NPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM-LAWPELRTIDI   89 (150)
Q Consensus        12 ~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~-n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~-~~~~~L~~L~l   89 (150)
                      ..++.++++.++.+|.  +..+.+|+.|+|++ |. ++.+++..|..+++|+.|+|++|.|+.+++.. ..+++|+.|+|
T Consensus        11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            3567777537899887  88899999999996 86 99999999999999999999999999987754 56999999999


Q ss_pred             cCCCccc
Q psy16571         90 AENPIEC   96 (150)
Q Consensus        90 ~~N~~~c   96 (150)
                      ++|.+.-
T Consensus        88 ~~N~l~~   94 (347)
T 2ifg_A           88 SFNALES   94 (347)
T ss_dssp             CSSCCSC
T ss_pred             CCCccce
Confidence            9999874

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.08  E-value=2.7e-10  Score=79.69  Aligned_cols=84  Identities=19%  Similarity=0.235  Sum_probs=67.1

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE   83 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~   83 (150)
                      .+..+.+|+.|++++| .++.++  .+..+++|+.|++++|. ++.+++  +..+++|+.|++++|.++.+|....  ++
T Consensus        36 ~~~~l~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~  107 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNS-NIQSLA--GMQFFTNLKELHLSHNQ-ISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--AC  107 (263)
T ss_dssp             CHHHHTTCSEEECTTS-CCCCCT--TGGGCTTCCEEECCSSC-CCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SS
T ss_pred             chhhcCcCcEEECcCC-Ccccch--HHhhCCCCCEEECCCCc-cCCChh--hccCCCCCEEECCCCccCCcCcccc--Cc
Confidence            3567789999999999 999887  57889999999999996 999887  7889999999999999888765332  45


Q ss_pred             ccEEEccCCCcc
Q psy16571         84 LRTIDIAENPIE   95 (150)
Q Consensus        84 L~~L~l~~N~~~   95 (150)
                      |+.|++++|.+.
T Consensus       108 L~~L~L~~N~l~  119 (263)
T 1xeu_A          108 LSRLFLDNNELR  119 (263)
T ss_dssp             CCEEECCSSCCS
T ss_pred             ccEEEccCCccC
Confidence            555555555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.07  E-value=1.2e-10  Score=83.17  Aligned_cols=93  Identities=12%  Similarity=0.095  Sum_probs=75.3

Q ss_pred             CccccCccccceeccCCCcCccc---ccC-cccCCCCCCCEEeCCCCCCCCccchh---hcCCCCCCCeEecCCCCcccc
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTR---VRK-GAFADNLNLETLTLNKNPKLKIIEED---ALVGLPNLYHLNLKENAFTSF   74 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~---i~~-~~~~~l~~L~~l~l~~n~~l~~~~~~---~~~~l~~L~~l~l~~n~l~~l   74 (150)
                      +..|.++++|++|++++| .+..   ++. ..+..+++|+.|++++|. ++.++..   .+..+++|+.|++++|.+..+
T Consensus       162 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~  239 (310)
T 4glp_A          162 CEQVRAFPALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRAT  239 (310)
T ss_dssp             TTSCCCCTTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred             HHHhccCCCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence            467889999999999999 7654   332 334678999999999996 9866543   346789999999999999976


Q ss_pred             -CcCcCCC---CCccEEEccCCCccc
Q psy16571         75 -SESMLAW---PELRTIDIAENPIEC   96 (150)
Q Consensus        75 -p~~~~~~---~~L~~L~l~~N~~~c   96 (150)
                       |..+..+   ++|+.|++++|.+..
T Consensus       240 ~p~~~~~~~~~~~L~~L~Ls~N~l~~  265 (310)
T 4glp_A          240 VNPSAPRCMWSSALNSLNLSFAGLEQ  265 (310)
T ss_dssp             CCSCCSSCCCCTTCCCEECCSSCCCS
T ss_pred             chhhHHhccCcCcCCEEECCCCCCCc
Confidence             7766665   699999999999883

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.06  E-value=2.2e-10  Score=83.12  Aligned_cols=87  Identities=24%  Similarity=0.323  Sum_probs=68.5

Q ss_pred             cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCC-CccchhhcCCCCCCCe-EecCCCCccccCcCc-CCCCCcc
Q psy16571          9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKL-KIIEEDALVGLPNLYH-LNLKENAFTSFSESM-LAWPELR   85 (150)
Q Consensus         9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l-~~~~~~~~~~l~~L~~-l~l~~n~l~~lp~~~-~~~~~L~   85 (150)
                      .++++|++++| .++.+++++|.++++|+.|++++|. + +.++..+|.+++++.. +.+.+|+++.++... ..+++|+
T Consensus        30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~-i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQND-VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  107 (350)
T ss_dssp             TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCT-TCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred             CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCC-CCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence            46888899998 8999988888899999999999886 5 5567777888887765 556678888886654 4578888


Q ss_pred             EEEccCCCcccc
Q psy16571         86 TIDIAENPIECG   97 (150)
Q Consensus        86 ~L~l~~N~~~c~   97 (150)
                      .|++++|.+.-.
T Consensus       108 ~L~l~~n~l~~~  119 (350)
T 4ay9_X          108 YLLISNTGIKHL  119 (350)
T ss_dssp             EEEEEEECCSSC
T ss_pred             cccccccccccC
Confidence            888888877543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.02  E-value=1e-09  Score=85.10  Aligned_cols=85  Identities=24%  Similarity=0.364  Sum_probs=48.0

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCc
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPEL   84 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L   84 (150)
                      |..+++|+.|++++| .+..++  .+..+++|+.|++++|. +..+  ..+..+++|+.|+|++|.+..++. +..+++|
T Consensus       105 l~~l~~L~~L~Ls~N-~l~~l~--~l~~l~~L~~L~Ls~N~-l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L  177 (605)
T 1m9s_A          105 LKDLKKLKSLSLEHN-GISDIN--GLVHLPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKL  177 (605)
T ss_dssp             STTCTTCCEEECTTS-CCCCCG--GGGGCTTCSEEECCSSC-CCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred             hccCCCCCEEEecCC-CCCCCc--cccCCCccCEEECCCCc-cCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCC
Confidence            445555555555555 555543  24555556666666554 5555  234556666666666666665544 4556666


Q ss_pred             cEEEccCCCccc
Q psy16571         85 RTIDIAENPIEC   96 (150)
Q Consensus        85 ~~L~l~~N~~~c   96 (150)
                      +.|+|++|.+..
T Consensus       178 ~~L~Ls~N~i~~  189 (605)
T 1m9s_A          178 QNLYLSKNHISD  189 (605)
T ss_dssp             CEEECCSSCCCB
T ss_pred             CEEECcCCCCCC
Confidence            666666666543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.00  E-value=1.2e-09  Score=84.74  Aligned_cols=87  Identities=21%  Similarity=0.313  Sum_probs=77.6

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE   83 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~   83 (150)
                      .|..+++|+.|++++| .+..+  ..+..+++|+.|++++|. +..+++  +..+++|+.|+|++|.|..++ .+..+++
T Consensus       126 ~l~~l~~L~~L~Ls~N-~l~~l--~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~  198 (605)
T 1m9s_A          126 GLVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKN  198 (605)
T ss_dssp             GGGGCTTCSEEECCSS-CCCCC--GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTT
T ss_pred             cccCCCccCEEECCCC-ccCCc--hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCCCCh-HHccCCC
Confidence            4778899999999999 99988  368899999999999996 998877  788999999999999999985 4777999


Q ss_pred             ccEEEccCCCcccc
Q psy16571         84 LRTIDIAENPIECG   97 (150)
Q Consensus        84 L~~L~l~~N~~~c~   97 (150)
                      |+.|+|++|++...
T Consensus       199 L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          199 LDVLELFSQECLNK  212 (605)
T ss_dssp             CSEEECCSEEEECC
T ss_pred             CCEEEccCCcCcCC
Confidence            99999999988654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.97  E-value=9.6e-10  Score=88.42  Aligned_cols=62  Identities=19%  Similarity=0.292  Sum_probs=24.7

Q ss_pred             cCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCC-ccEEEccCCCc
Q psy16571         30 FADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE-LRTIDIAENPI   94 (150)
Q Consensus        30 ~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~-L~~L~l~~N~~   94 (150)
                      +..+++|+.|++++|. +..++  .|..+++|+.|+|++|.+..+|..+..+++ |+.|++++|.+
T Consensus       569 l~~L~~L~~L~Ls~N~-l~~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L  631 (876)
T 4ecn_A          569 LQKMVKLGLLDCVHNK-VRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL  631 (876)
T ss_dssp             HTTCTTCCEEECTTSC-CCBCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCC
T ss_pred             hhcCCCCCEEECCCCC-cccch--hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCC
Confidence            3334444444444442 33333  233344444444444444444433333333 44444444433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.97  E-value=3.2e-09  Score=76.50  Aligned_cols=82  Identities=23%  Similarity=0.413  Sum_probs=54.2

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCc
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPEL   84 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L   84 (150)
                      |..+++|++|++++| .++.+++  +..+++|+.|++++|. +..++  .+..+++|+.|++++|.+..++. +..+++|
T Consensus        62 ~~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n~-i~~~~--~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L  134 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNK-ITDIS--ALQNLTNLRELYLNEDNISDISP-LANLTKM  134 (347)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSC-CCCCG--GGTTCTTCSEEECTTSCCCCCGG-GTTCTTC
T ss_pred             hhhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCCc-ccCch--HHcCCCcCCEEECcCCcccCchh-hccCCce
Confidence            555667777777777 7776654  6667777777777774 66653  35667777777777777766655 4455666


Q ss_pred             cEEEccCCC
Q psy16571         85 RTIDIAENP   93 (150)
Q Consensus        85 ~~L~l~~N~   93 (150)
                      +.|++++|.
T Consensus       135 ~~L~l~~n~  143 (347)
T 4fmz_A          135 YSLNLGANH  143 (347)
T ss_dssp             CEEECTTCT
T ss_pred             eEEECCCCC
Confidence            666666653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.96  E-value=1.7e-09  Score=86.94  Aligned_cols=85  Identities=21%  Similarity=0.297  Sum_probs=41.3

Q ss_pred             CccccceeccCCCcCcccccCcccCCCC-------CCCEEeCCCCCCCCccchhhc-CCCCCCCeEecCCCCccccCcCc
Q psy16571          7 GLSYLKRLEITGASNLTRVRKGAFADNL-------NLETLTLNKNPKLKIIEEDAL-VGLPNLYHLNLKENAFTSFSESM   78 (150)
Q Consensus         7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~-------~L~~l~l~~n~~l~~~~~~~~-~~l~~L~~l~l~~n~l~~lp~~~   78 (150)
                      .+++|+.|++++| .++.++...+....       +|+.|++++|. +..++...+ ..+++|+.|+|++|.+..+|..+
T Consensus       695 ~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l  772 (876)
T 4ecn_A          695 TGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQP  772 (876)
T ss_dssp             TTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGG
T ss_pred             cCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCCCCCccchhh
Confidence            3445555555555 55555444443221       45555555553 554443321 24555555555555555555545


Q ss_pred             CCCCCccEEEccCCC
Q psy16571         79 LAWPELRTIDIAENP   93 (150)
Q Consensus        79 ~~~~~L~~L~l~~N~   93 (150)
                      ..+++|+.|++++|+
T Consensus       773 ~~L~~L~~L~Ls~N~  787 (876)
T 4ecn_A          773 LNSSQLKAFGIRHQR  787 (876)
T ss_dssp             GGCTTCCEEECCCCB
T ss_pred             hcCCCCCEEECCCCC
Confidence            555555555555433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.96  E-value=3.2e-09  Score=79.78  Aligned_cols=81  Identities=27%  Similarity=0.373  Sum_probs=42.8

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCc
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPEL   84 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L   84 (150)
                      |..+++|++|++++| .++.++   +..+++|+.|++++|. ++.++   +..+++|+.|++++|.++.++  +..+++|
T Consensus        60 l~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N~-l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L  129 (457)
T 3bz5_A           60 IEKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSNK-LTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLL  129 (457)
T ss_dssp             GGGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSC-CSCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTC
T ss_pred             hcccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCCC-Cceee---cCCCCcCCEEECCCCcCCeec--CCCCCcC
Confidence            444555555555555 555542   4445555555555553 55542   445555555555555555543  3445555


Q ss_pred             cEEEccCCCcc
Q psy16571         85 RTIDIAENPIE   95 (150)
Q Consensus        85 ~~L~l~~N~~~   95 (150)
                      +.|++++|.+.
T Consensus       130 ~~L~l~~N~l~  140 (457)
T 3bz5_A          130 TYLNCARNTLT  140 (457)
T ss_dssp             CEEECTTSCCS
T ss_pred             CEEECCCCccc
Confidence            55555555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.96  E-value=1.7e-09  Score=81.16  Aligned_cols=85  Identities=24%  Similarity=0.351  Sum_probs=70.2

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCc
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPEL   84 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L   84 (150)
                      +..+++|++|++++| .++.+++  +..+++|+.|++++|. +..+++  +..+++|+.|++++|.+..++. +..+++|
T Consensus        64 ~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L  136 (466)
T 1o6v_A           64 VEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQ-IADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNL  136 (466)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred             hhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCc-cccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCC
Confidence            566788889999998 8888876  7888899999999885 888776  7788899999999998888765 6678888


Q ss_pred             cEEEccCCCccc
Q psy16571         85 RTIDIAENPIEC   96 (150)
Q Consensus        85 ~~L~l~~N~~~c   96 (150)
                      +.|++++|.+..
T Consensus       137 ~~L~l~~n~l~~  148 (466)
T 1o6v_A          137 NRLELSSNTISD  148 (466)
T ss_dssp             SEEEEEEEEECC
T ss_pred             CEEECCCCccCC
Confidence            888888887654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.94  E-value=1.5e-09  Score=83.66  Aligned_cols=79  Identities=23%  Similarity=0.314  Sum_probs=60.6

Q ss_pred             ccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCC-------CeEecCCCCccccCcCcCC
Q psy16571          8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNL-------YHLNLKENAFTSFSESMLA   80 (150)
Q Consensus         8 l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L-------~~l~l~~n~l~~lp~~~~~   80 (150)
                      +++|+.|++++| .++.++.  |.  ++|+.|++++|. ++.++.  |..  +|       +.|+|++|.|+.+|..++.
T Consensus       159 l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~  228 (571)
T 3cvr_A          159 PTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNL-LESLPA--VPV--RNHHSEETEIFFRCRENRITHIPENILS  228 (571)
T ss_dssp             CTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSC-CSSCCC--CC----------CCEEEECCSSCCCCCCGGGGG
T ss_pred             CCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCC-CCchhh--HHH--hhhcccccceEEecCCCcceecCHHHhc
Confidence            456777777777 7777665  43  778888888885 877765  333  66       8899999999999988888


Q ss_pred             CCCccEEEccCCCccc
Q psy16571         81 WPELRTIDIAENPIEC   96 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c   96 (150)
                      +++|+.|++++|++.+
T Consensus       229 l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          229 LDPTCTIILEDNPLSS  244 (571)
T ss_dssp             SCTTEEEECCSSSCCH
T ss_pred             CCCCCEEEeeCCcCCC
Confidence            9999999999999876

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.93  E-value=1.8e-09  Score=81.07  Aligned_cols=84  Identities=18%  Similarity=0.247  Sum_probs=75.0

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE   83 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~   83 (150)
                      .+..++.|++|++++| .++.++  .+..+++|+.|++++|. ++.++   +..+++|+.|++++|.++.++  +..+++
T Consensus        37 ~~~~l~~L~~L~Ls~n-~l~~~~--~l~~l~~L~~L~Ls~n~-l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~  107 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNS-SITDMT--GIEKLTGLTKLICTSNN-ITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTK  107 (457)
T ss_dssp             EHHHHTTCCEEECCSS-CCCCCT--TGGGCTTCSEEECCSSC-CSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTT
T ss_pred             ChhHcCCCCEEEccCC-CcccCh--hhcccCCCCEEEccCCc-CCeEc---cccCCCCCEEECcCCCCceee--cCCCCc
Confidence            4667899999999999 999986  58889999999999996 99884   778999999999999999985  677899


Q ss_pred             ccEEEccCCCccc
Q psy16571         84 LRTIDIAENPIEC   96 (150)
Q Consensus        84 L~~L~l~~N~~~c   96 (150)
                      |+.|++++|.+..
T Consensus       108 L~~L~L~~N~l~~  120 (457)
T 3bz5_A          108 LTYLNCDTNKLTK  120 (457)
T ss_dssp             CCEEECCSSCCSC
T ss_pred             CCEEECCCCcCCe
Confidence            9999999998865

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.92  E-value=2.6e-12  Score=86.26  Aligned_cols=92  Identities=26%  Similarity=0.375  Sum_probs=55.6

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchh---------------------hcCCCCCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEED---------------------ALVGLPNLY   62 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~---------------------~~~~l~~L~   62 (150)
                      .|..+++|++|++++| .++.++  .+..+++|+.|++++|. ++.++..                     .+..+++|+
T Consensus        43 ~~~~l~~L~~L~ls~n-~l~~l~--~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~  118 (198)
T 1ds9_A           43 TLSTLKACKHLALSTN-NIEKIS--SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCSEEECSEE-EESCCC--CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSS
T ss_pred             HHhcCCCCCEEECCCC-CCcccc--ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCCccccCCCCC
Confidence            4455555666666655 555544  34445555555555553 4443321                     233456677


Q ss_pred             eEecCCCCccccCc--CcCCCCCccEEEccCCCcccccC
Q psy16571         63 HLNLKENAFTSFSE--SMLAWPELRTIDIAENPIECGCN   99 (150)
Q Consensus        63 ~l~l~~n~l~~lp~--~~~~~~~L~~L~l~~N~~~c~c~   99 (150)
                      .|++++|.++.++.  .+..+++|+.|++++|++.+.|.
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred             EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence            77777777776554  45567888899999998888764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.90  E-value=5.9e-09  Score=78.22  Aligned_cols=82  Identities=24%  Similarity=0.316  Sum_probs=36.3

Q ss_pred             ccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEE
Q psy16571          8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTI   87 (150)
Q Consensus         8 l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L   87 (150)
                      +++|+.|++++| .+..+++  +..+++|+.|++++|. +..+++  +..+++|+.|++++|.+..++. +..+++|+.|
T Consensus       264 l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L  336 (466)
T 1o6v_A          264 LTKLTELKLGAN-QISNISP--LAGLTALTNLELNENQ-LEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRL  336 (466)
T ss_dssp             CTTCSEEECCSS-CCCCCGG--GTTCTTCSEEECCSSC-CSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEE
T ss_pred             CCCCCEEECCCC-ccCcccc--ccCCCccCeEEcCCCc-ccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEe
Confidence            333444444443 3333332  3334444444444443 444332  3344445555555555444333 3334555555


Q ss_pred             EccCCCccc
Q psy16571         88 DIAENPIEC   96 (150)
Q Consensus        88 ~l~~N~~~c   96 (150)
                      ++++|.+..
T Consensus       337 ~l~~n~l~~  345 (466)
T 1o6v_A          337 FFYNNKVSD  345 (466)
T ss_dssp             ECCSSCCCC
T ss_pred             ECCCCccCC
Confidence            555555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.89  E-value=4.1e-09  Score=75.79  Aligned_cols=84  Identities=24%  Similarity=0.281  Sum_probs=72.4

Q ss_pred             ccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCC-eEecCCCCccccCcCcCC-CCCcc
Q psy16571          8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLY-HLNLKENAFTSFSESMLA-WPELR   85 (150)
Q Consensus         8 l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~-~l~l~~n~l~~lp~~~~~-~~~L~   85 (150)
                      +.+|+.|++++| .++.++..+|.++.+|+.+++++|  +..++..+|.++.+|+ .+.+.+ .++.++...|. +++|+
T Consensus       225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence            678999999998 899999999999999999999876  8889999999999999 999988 78888776554 88999


Q ss_pred             EEEccCCCcc
Q psy16571         86 TIDIAENPIE   95 (150)
Q Consensus        86 ~L~l~~N~~~   95 (150)
                      .+++.+|.+.
T Consensus       301 ~l~l~~n~i~  310 (329)
T 3sb4_A          301 YVLATGDKIT  310 (329)
T ss_dssp             EEEECSSCCC
T ss_pred             EEEeCCCccC
Confidence            9999877654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.89  E-value=2.1e-09  Score=77.99  Aligned_cols=74  Identities=20%  Similarity=0.366  Sum_probs=63.3

Q ss_pred             CccccCccccceeccCCCcCc-ccccCcccCCCCCCCEE-eCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC
Q psy16571          2 EKEVKGLSYLKRLEITGASNL-TRVRKGAFADNLNLETL-TLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES   77 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l-~~i~~~~~~~l~~L~~l-~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~   77 (150)
                      +++|.++++|++|++++| .+ +.++.++|.+++++..+ .+.+|. +..+++.+|..+++|+.+++++|++..+|..
T Consensus        47 ~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~~~~N~-l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~  122 (350)
T 4ay9_X           47 KGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKANN-LLYINPEAFQNLPNLQYLLISNTGIKHLPDV  122 (350)
T ss_dssp             TTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEEEEETT-CCEECTTSBCCCTTCCEEEEEEECCSSCCCC
T ss_pred             HHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhhhcccCCc-ccccCchhhhhccccccccccccccccCCch
Confidence            467999999999999999 75 66888899999988764 556675 9999999999999999999999999877653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.88  E-value=7.1e-09  Score=74.52  Aligned_cols=84  Identities=19%  Similarity=0.254  Sum_probs=72.7

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCC-EEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLE-TLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~-~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~   80 (150)
                      +.+|.++.+|+.|++++|  ++.++..+|.++.+|+ .+.+++ . ++.+.+.+|.++++|+.+++.+|.++.++...|.
T Consensus       243 ~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~-l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~  318 (329)
T 3sb4_A          243 DFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-S-VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG  318 (329)
T ss_dssp             TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-T-CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred             HhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-c-ceEEchhhhhCCccCCEEEeCCCccCccchhhhc
Confidence            467999999999999976  8889999999999999 999987 4 8899999999999999999999999999886665


Q ss_pred             -CCCccEEEc
Q psy16571         81 -WPELRTIDI   89 (150)
Q Consensus        81 -~~~L~~L~l   89 (150)
                       +++|+.++.
T Consensus       319 ~~~~L~~ly~  328 (329)
T 3sb4_A          319 NGVPSKLIYK  328 (329)
T ss_dssp             TTCCCCEEEC
T ss_pred             CCcchhhhcc
Confidence             778888764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.88  E-value=5.7e-09  Score=81.23  Aligned_cols=88  Identities=26%  Similarity=0.329  Sum_probs=68.5

Q ss_pred             cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEE
Q psy16571          9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTID   88 (150)
Q Consensus         9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~   88 (150)
                      ++|+.|++++| .++.++    ..+++|+.|++++|. ++.++.    .+++|+.|+|++|.|+.+|..+..+++|+.|+
T Consensus       221 ~~L~~L~Ls~N-~L~~lp----~~l~~L~~L~Ls~N~-L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~  290 (622)
T 3g06_A          221 SGLKELIVSGN-RLTSLP----VLPSELKELMVSGNR-LTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVN  290 (622)
T ss_dssp             TTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEE
T ss_pred             CCCCEEEccCC-ccCcCC----CCCCcCcEEECCCCC-CCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEE
Confidence            56777888887 777766    345778888888885 887765    46789999999999999998888899999999


Q ss_pred             ccCCCcccccChHHHHHHH
Q psy16571         89 IAENPIECGCNILWLREML  107 (150)
Q Consensus        89 l~~N~~~c~c~~~~l~~~~  107 (150)
                      +++|++.. .....+....
T Consensus       291 L~~N~l~~-~~~~~l~~L~  308 (622)
T 3g06_A          291 LEGNPLSE-RTLQALREIT  308 (622)
T ss_dssp             CCSCCCCH-HHHHHHHHHH
T ss_pred             ecCCCCCC-cCHHHHHhcc
Confidence            99999975 3334444433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.85  E-value=1.3e-09  Score=79.86  Aligned_cols=104  Identities=22%  Similarity=0.212  Sum_probs=76.0

Q ss_pred             cccCccccceeccCCCcCcc-----cccCcccCCCCCCCEEeCCCCCCCCccc----hhhc--CCCCCCCeEecCCCCcc
Q psy16571          4 EVKGLSYLKRLEITGASNLT-----RVRKGAFADNLNLETLTLNKNPKLKIIE----EDAL--VGLPNLYHLNLKENAFT   72 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~-----~i~~~~~~~l~~L~~l~l~~n~~l~~~~----~~~~--~~l~~L~~l~l~~n~l~   72 (150)
                      .+..+++|+.|++++| .++     .++ ..+..+++|+.|++++|. ++...    +..+  ..+++|+.|+|++|.++
T Consensus       211 ~l~~~~~L~~L~Ls~n-~l~~~g~~~l~-~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          211 GLAYCQELKVLDLQDN-TFTHLGSSALA-IALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             TGGGCTTCCEEECCSS-CCHHHHHHHHH-HHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             HhhcCCCccEEECcCC-CCCcHHHHHHH-HHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence            5667788888888888 773     333 356778888888888885 77652    2334  33788999999999888


Q ss_pred             c-----cCcCc-CCCCCccEEEccCCCcccccC-hHHHHHHHhhc
Q psy16571         73 S-----FSESM-LAWPELRTIDIAENPIECGCN-ILWLREMLVRR  110 (150)
Q Consensus        73 ~-----lp~~~-~~~~~L~~L~l~~N~~~c~c~-~~~l~~~~~~~  110 (150)
                      .     +|..+ .++++|+.|++++|++..... +..+...+.+.
T Consensus       288 ~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~  332 (386)
T 2ca6_A          288 LDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR  332 (386)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhc
Confidence            7     77766 347899999999999987765 45566655543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.82  E-value=4.2e-12  Score=85.20  Aligned_cols=88  Identities=19%  Similarity=0.175  Sum_probs=69.7

Q ss_pred             ccCccccceeccCCCcCcccccCc------ccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCc
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKG------AFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM   78 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~------~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~   78 (150)
                      |.....+..++++.+ .+....+.      .+..+++|+.|++++|. ++.++  .+..+++|+.|++++|.+..+|..+
T Consensus        14 ~~~~~~l~~l~l~~~-~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~   89 (198)
T 1ds9_A           14 FEERKSVVATEAEKV-ELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS--SLSGMENLRILSLGRNLIKKIENLD   89 (198)
T ss_dssp             HHHTTCCCCTTCSEE-ECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC--CHHHHTTCCEEEEEEEEECSCSSHH
T ss_pred             HHhcccccCcchhee-EeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc--ccccCCCCCEEECCCCCcccccchh
Confidence            344556777777777 66554443      68889999999999996 99876  5678899999999999999988755


Q ss_pred             CCCCCccEEEccCCCccc
Q psy16571         79 LAWPELRTIDIAENPIEC   96 (150)
Q Consensus        79 ~~~~~L~~L~l~~N~~~c   96 (150)
                      ..+++|+.|++++|.+..
T Consensus        90 ~~~~~L~~L~L~~N~l~~  107 (198)
T 1ds9_A           90 AVADTLEELWISYNQIAS  107 (198)
T ss_dssp             HHHHHCSEEEEEEEECCC
T ss_pred             hcCCcCCEEECcCCcCCc
Confidence            556788999998888764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.75  E-value=3.9e-08  Score=75.81  Aligned_cols=33  Identities=27%  Similarity=0.471  Sum_probs=13.1

Q ss_pred             CCCeEecCCCCccccCcCcCCCCCccEEEccCCCcc
Q psy16571         60 NLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE   95 (150)
Q Consensus        60 ~L~~l~l~~n~l~~lp~~~~~~~~L~~L~l~~N~~~   95 (150)
                      +|+.|+|++|.++.+|. +.  ++|+.|++++|.+.
T Consensus       161 ~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          161 SLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             TCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS
T ss_pred             CcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC
Confidence            34444444444444333 11  34444444444433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.69  E-value=6.1e-09  Score=75.81  Aligned_cols=62  Identities=29%  Similarity=0.406  Sum_probs=33.3

Q ss_pred             ccceeccCCCcCcccccC----cccCCCC-CCCEEeCCCCCCCCccchhhcCCC-----CCCCeEecCCCCccc
Q psy16571         10 YLKRLEITGASNLTRVRK----GAFADNL-NLETLTLNKNPKLKIIEEDALVGL-----PNLYHLNLKENAFTS   73 (150)
Q Consensus        10 ~L~~L~l~~n~~l~~i~~----~~~~~l~-~L~~l~l~~n~~l~~~~~~~~~~l-----~~L~~l~l~~n~l~~   73 (150)
                      +|++|++++| .++.++.    ..|..++ +|+.|++++|. ++......+..+     ++|+.|+|++|.++.
T Consensus        23 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~   94 (362)
T 3goz_A           23 GVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNFLSY   94 (362)
T ss_dssp             TCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             CceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence            3666666666 5555554    4455555 56666666664 555444333332     555555555555553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.67  E-value=1e-08  Score=73.57  Aligned_cols=84  Identities=15%  Similarity=0.212  Sum_probs=40.9

Q ss_pred             CccccceeccCCCcCcccc-cCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCC-Cccc--cCcCcCCCC
Q psy16571          7 GLSYLKRLEITGASNLTRV-RKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN-AFTS--FSESMLAWP   82 (150)
Q Consensus         7 ~l~~L~~L~l~~n~~l~~i-~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n-~l~~--lp~~~~~~~   82 (150)
                      .+++|++|++++| .+... .+..+..+++|+.|++++|. +....+..+..+++|+.|++++| .++.  ++..+..++
T Consensus        91 ~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~  168 (336)
T 2ast_B           91 SPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  168 (336)
T ss_dssp             CCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             cCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence            3455555555555 44432 22344555555555555553 54444444445555555555555 3442  333333344


Q ss_pred             CccEEEccCC
Q psy16571         83 ELRTIDIAEN   92 (150)
Q Consensus        83 ~L~~L~l~~N   92 (150)
                      +|+.|++++|
T Consensus       169 ~L~~L~l~~~  178 (336)
T 2ast_B          169 RLDELNLSWC  178 (336)
T ss_dssp             TCCEEECCCC
T ss_pred             CCCEEcCCCC
Confidence            4555555444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.65  E-value=1.4e-07  Score=70.87  Aligned_cols=20  Identities=20%  Similarity=0.532  Sum_probs=8.8

Q ss_pred             ccCccccceeccCCCcCcccc
Q psy16571          5 VKGLSYLKRLEITGASNLTRV   25 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i   25 (150)
                      |.++++|++|++++| .++.+
T Consensus       149 ~~~l~~L~~L~l~~N-~l~~l  168 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNN-SLKKL  168 (454)
T ss_dssp             CTTCTTCCEEECCSS-CCSCC
T ss_pred             cCCCCCCCEEECCCC-cCccc
Confidence            344444444444444 44433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.63  E-value=1.6e-07  Score=70.54  Aligned_cols=78  Identities=18%  Similarity=0.328  Sum_probs=51.3

Q ss_pred             cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEE
Q psy16571          9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTID   88 (150)
Q Consensus         9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~   88 (150)
                      ++|++|++++| .++.++  .|..+++|+.+++++|. ++.++..    ..+|+.|++++|.++.+| .+..+++|+.|+
T Consensus       131 ~~L~~L~L~~n-~l~~lp--~~~~l~~L~~L~l~~N~-l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNN-QLEKLP--ELQNSSFLKIIDVDNNS-LKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSS-CCSSCC--CCTTCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEE
T ss_pred             CCCCEEECcCC-CCCCCc--ccCCCCCCCEEECCCCc-CcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEE
Confidence            46777777777 777665  36777777777777774 7665432    246667777777766665 355566667777


Q ss_pred             ccCCCcc
Q psy16571         89 IAENPIE   95 (150)
Q Consensus        89 l~~N~~~   95 (150)
                      +++|.+.
T Consensus       202 l~~N~l~  208 (454)
T 1jl5_A          202 ADNNSLK  208 (454)
T ss_dssp             CCSSCCS
T ss_pred             CCCCcCC
Confidence            7666654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.62  E-value=1.2e-07  Score=73.77  Aligned_cols=57  Identities=26%  Similarity=0.304  Sum_probs=27.9

Q ss_pred             cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccC
Q psy16571          9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS   75 (150)
Q Consensus         9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp   75 (150)
                      ++|+.|++++| .++.++.    .+++|+.|++++|. ++.++.    .+++|+.|++++|.++.+|
T Consensus        61 ~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~l~~l~  117 (622)
T 3g06_A           61 AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQ-LTSLPV----LPPGLLELSIFSNPLTHLP  117 (622)
T ss_dssp             TTCSEEEECSC-CCSCCCC----CCTTCCEEEECSCC-CSCCCC----CCTTCCEEEECSCCCCCCC
T ss_pred             CCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCCc-CCcCCC----CCCCCCEEECcCCcCCCCC
Confidence            34555555555 5555543    24455555555553 554443    2344444444444444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.56  E-value=9.7e-09  Score=74.75  Aligned_cols=90  Identities=20%  Similarity=0.241  Sum_probs=54.4

Q ss_pred             cccCcc-ccceeccCCCcCcccccCcccCCC-----CCCCEEeCCCCCCCCccchhh----cCCC-CCCCeEecCCCCcc
Q psy16571          4 EVKGLS-YLKRLEITGASNLTRVRKGAFADN-----LNLETLTLNKNPKLKIIEEDA----LVGL-PNLYHLNLKENAFT   72 (150)
Q Consensus         4 ~f~~l~-~L~~L~l~~n~~l~~i~~~~~~~l-----~~L~~l~l~~n~~l~~~~~~~----~~~l-~~L~~l~l~~n~l~   72 (150)
                      +|.+++ +|++|++++| .++......+..+     ++|+.|++++|. ++...+..    +... ++|+.|++++|.++
T Consensus        45 ~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  122 (362)
T 3goz_A           45 AFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFS  122 (362)
T ss_dssp             HHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             HHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence            345565 6777777777 7776655555543     677777777775 66655442    2233 66777777777766


Q ss_pred             ccCcCc-----CC-CCCccEEEccCCCcc
Q psy16571         73 SFSESM-----LA-WPELRTIDIAENPIE   95 (150)
Q Consensus        73 ~lp~~~-----~~-~~~L~~L~l~~N~~~   95 (150)
                      ..+...     .. ..+|+.|++++|.+.
T Consensus       123 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A          123 SKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             GSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             cHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence            544321     11 246666666666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.52  E-value=1.6e-08  Score=72.51  Aligned_cols=89  Identities=20%  Similarity=0.213  Sum_probs=62.7

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCcc-chhhcCCCCCCCeEecCCC-Cccc--cCcCcC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKII-EEDALVGLPNLYHLNLKEN-AFTS--FSESML   79 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~-~~~~~~~l~~L~~l~l~~n-~l~~--lp~~~~   79 (150)
                      .+..+++|++|++++| .++...+..+..+++|+.|++++|..++.. .+..+..+++|+.|++++| .++.  ++..+.
T Consensus       113 ~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  191 (336)
T 2ast_B          113 ILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA  191 (336)
T ss_dssp             HHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred             HHhhCCCCCEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence            4667788888888888 777655556777888888888888326542 2333566788888888888 7763  455455


Q ss_pred             CCC-CccEEEccCCC
Q psy16571         80 AWP-ELRTIDIAENP   93 (150)
Q Consensus        80 ~~~-~L~~L~l~~N~   93 (150)
                      .++ +|+.|++++|.
T Consensus       192 ~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          192 HVSETITQLNLSGYR  206 (336)
T ss_dssp             HSCTTCCEEECCSCG
T ss_pred             hcccCCCEEEeCCCc
Confidence            566 77777777774

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.51  E-value=4.6e-07  Score=67.02  Aligned_cols=85  Identities=12%  Similarity=0.194  Sum_probs=39.1

Q ss_pred             cccCccccceeccCCCcCcc-----cccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCc
Q psy16571          4 EVKGLSYLKRLEITGASNLT-----RVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM   78 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~-----~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~   78 (150)
                      +|.++.+|+.+.+.+| .+.     .++..+|.++++|+.+.+. +. +..+...+|.++.+|+.+.|..+ ++.++...
T Consensus       266 aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~-i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a  341 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIP-ES-IRILGQGLLGGNRKVTQLTIPAN-VTQINFSA  341 (401)
T ss_dssp             TTTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCC-TT-CCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred             HhhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeC-Cc-eEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence            4444455555554443 332     3444455555555555554 22 44454455555555555555332 44444433


Q ss_pred             CCCCCccEEEccCC
Q psy16571         79 LAWPELRTIDIAEN   92 (150)
Q Consensus        79 ~~~~~L~~L~l~~N   92 (150)
                      |...+|+.+.+.+|
T Consensus       342 F~~~~L~~l~l~~n  355 (401)
T 4fdw_A          342 FNNTGIKEVKVEGT  355 (401)
T ss_dssp             SSSSCCCEEEECCS
T ss_pred             CCCCCCCEEEEcCC
Confidence            33115555555444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.44  E-value=7.3e-08  Score=70.56  Aligned_cols=87  Identities=17%  Similarity=0.245  Sum_probs=40.2

Q ss_pred             cCccccceeccCCCcCcccccCc----ccCCCCCCCEEeCCCCCCCCccc---hhh-------cCCCCCCCeEecCCCCc
Q psy16571          6 KGLSYLKRLEITGASNLTRVRKG----AFADNLNLETLTLNKNPKLKIIE---EDA-------LVGLPNLYHLNLKENAF   71 (150)
Q Consensus         6 ~~l~~L~~L~l~~n~~l~~i~~~----~~~~l~~L~~l~l~~n~~l~~~~---~~~-------~~~l~~L~~l~l~~n~l   71 (150)
                      ..+++|+.|++++| .++.....    .+..+++|+.|++++|. +..+.   +..       +..+++|+.|+|++|.+
T Consensus        29 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           29 LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             HHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             hcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            34445555555555 55443221    24445555555555542 32211   111       23455555555555555


Q ss_pred             cc-----cCcCcCCCCCccEEEccCCCc
Q psy16571         72 TS-----FSESMLAWPELRTIDIAENPI   94 (150)
Q Consensus        72 ~~-----lp~~~~~~~~L~~L~l~~N~~   94 (150)
                      ..     ++..+..+++|+.|++++|.+
T Consensus       107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l  134 (386)
T 2ca6_A          107 GPTAQEPLIDFLSKHTPLEHLYLHNNGL  134 (386)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             CHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence            43     333333345555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.41  E-value=1.6e-07  Score=65.92  Aligned_cols=88  Identities=19%  Similarity=0.160  Sum_probs=61.7

Q ss_pred             cCccccce--eccCCCcCcccccC---cccCCCCCCCEEeCCCCCCCCccch--hhcCCCCCCCeEecCCCCccccCcCc
Q psy16571          6 KGLSYLKR--LEITGASNLTRVRK---GAFADNLNLETLTLNKNPKLKIIEE--DALVGLPNLYHLNLKENAFTSFSESM   78 (150)
Q Consensus         6 ~~l~~L~~--L~l~~n~~l~~i~~---~~~~~l~~L~~l~l~~n~~l~~~~~--~~~~~l~~L~~l~l~~n~l~~lp~~~   78 (150)
                      ...+.|..  ++++.| ....++.   .....+++|+.|++++|. ++.+..  ..+..+++|+.|+|++|.|..+.. +
T Consensus       138 ~~dp~L~~~~l~l~~N-~~~~~~~~l~i~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l  214 (267)
T 3rw6_A          138 RSDPDLVAQNIDVVLN-RRSCMAATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERE-L  214 (267)
T ss_dssp             GGCHHHHHTTCCCCTT-SHHHHHHHHHHHHHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-G
T ss_pred             CCCcchhhcCccccCC-HHHHHHHHHHHHHhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCchh-h
Confidence            33344444  667776 5444431   222457899999999996 988764  445578999999999999997732 3


Q ss_pred             CCCC--CccEEEccCCCccc
Q psy16571         79 LAWP--ELRTIDIAENPIEC   96 (150)
Q Consensus        79 ~~~~--~L~~L~l~~N~~~c   96 (150)
                      ..+.  +|+.|++.+|++.-
T Consensus       215 ~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          215 DKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             GGGTTSCCSEEECTTSTTGG
T ss_pred             hhcccCCcceEEccCCcCcc
Confidence            3333  89999999999753

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.39  E-value=6.6e-08  Score=67.80  Aligned_cols=80  Identities=29%  Similarity=0.426  Sum_probs=58.9

Q ss_pred             cCccccceeccCCCcCcccccC--cccCCCCCCCEEeCCCCCCCCccch-hhcCCCCCCCeEecCCCCccc-cCcC----
Q psy16571          6 KGLSYLKRLEITGASNLTRVRK--GAFADNLNLETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFTS-FSES----   77 (150)
Q Consensus         6 ~~l~~L~~L~l~~n~~l~~i~~--~~~~~l~~L~~l~l~~n~~l~~~~~-~~~~~l~~L~~l~l~~n~l~~-lp~~----   77 (150)
                      .+++.|+.|++++| .++.++.  ..+..+++|+.|+|++|. +..+.. ..+..+ +|+.|+|++|.+.. +|..    
T Consensus       167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccC-CcceEEccCCcCccccCcchhHH
Confidence            35778999999999 9988763  445578999999999996 888732 334444 89999999999973 5421    


Q ss_pred             ---cCCCCCccEEE
Q psy16571         78 ---MLAWPELRTID   88 (150)
Q Consensus        78 ---~~~~~~L~~L~   88 (150)
                         +..+++|+.|+
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence               22367777664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.37  E-value=1.9e-06  Score=63.78  Aligned_cols=63  Identities=21%  Similarity=0.290  Sum_probs=41.6

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE   68 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~   68 (150)
                      +.+|.++.+|+.+++++| .++.++..+|. ..+|+.+.+..+  +..+...+|.++++|+.+.+..
T Consensus       173 ~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          173 EDIFYYCYNLKKADLSKT-KITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             SSTTTTCTTCCEEECTTS-CCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT
T ss_pred             HHHhhCcccCCeeecCCC-cceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC
Confidence            356777777777777776 66666666665 356666666533  6666666666666666666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.30  E-value=1.2e-07  Score=70.68  Aligned_cols=39  Identities=26%  Similarity=0.276  Sum_probs=19.6

Q ss_pred             CCCCCeEecCCCCcc-----ccCcCcCCCCCccEEEccCCCccc
Q psy16571         58 LPNLYHLNLKENAFT-----SFSESMLAWPELRTIDIAENPIEC   96 (150)
Q Consensus        58 l~~L~~l~l~~n~l~-----~lp~~~~~~~~L~~L~l~~N~~~c   96 (150)
                      .++|+.|++++|.++     .++..+..+++|+.|++++|++..
T Consensus       369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            345555555555554     334433345555555555555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.29  E-value=3.5e-06  Score=61.89  Aligned_cols=85  Identities=19%  Similarity=0.366  Sum_probs=54.6

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC-CC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WP   82 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~-~~   82 (150)
                      +|.++..|+.+.+..  .+..++..+|.++.+|+.+.+..+  ++.+...+|.++.+|+.+.|..+ ++.+....|. +.
T Consensus       283 aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~  357 (394)
T 4gt6_A          283 AFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT  357 (394)
T ss_dssp             TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred             ccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence            455555566665542  466677777777777777777644  66677777777777777777543 6666655443 67


Q ss_pred             CccEEEccCCC
Q psy16571         83 ELRTIDIAENP   93 (150)
Q Consensus        83 ~L~~L~l~~N~   93 (150)
                      +|+.+.+.++.
T Consensus       358 ~L~~i~~~~~~  368 (394)
T 4gt6_A          358 ALNNIEYSGSR  368 (394)
T ss_dssp             TCCEEEESSCH
T ss_pred             CCCEEEECCce
Confidence            77777776653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.25  E-value=2.7e-07  Score=67.61  Aligned_cols=13  Identities=23%  Similarity=0.434  Sum_probs=6.4

Q ss_pred             CCccEEEccCCCc
Q psy16571         82 PELRTIDIAENPI   94 (150)
Q Consensus        82 ~~L~~L~l~~N~~   94 (150)
                      ++|+.|++++|++
T Consensus       239 ~~L~~L~Ls~N~i  251 (372)
T 3un9_A          239 PSLELLHLYFNEL  251 (372)
T ss_dssp             SSCCEEECTTSSC
T ss_pred             CCCCEEeccCCCC
Confidence            4455555555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.23  E-value=3.7e-06  Score=61.79  Aligned_cols=85  Identities=15%  Similarity=0.278  Sum_probs=70.1

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC-C
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-W   81 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~-~   81 (150)
                      .+|.+..+|+.+.+..  .++.++..+|.++.+|+.+.+..+  ++.+...+|.++.+|+.+.+..+ ++.++...|. +
T Consensus       291 ~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C  365 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC  365 (394)
T ss_dssp             TTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred             cccccccccccccccc--ccceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence            4577788888888875  488899899999999999999754  88898899999999999999776 7888776665 7


Q ss_pred             CCccEEEccCC
Q psy16571         82 PELRTIDIAEN   92 (150)
Q Consensus        82 ~~L~~L~l~~N   92 (150)
                      .+|+.+.+..+
T Consensus       366 ~~L~~i~lp~~  376 (394)
T 4fs7_A          366 INLKKVELPKR  376 (394)
T ss_dssp             TTCCEEEEEGG
T ss_pred             CCCCEEEECCC
Confidence            88999988654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.21  E-value=4.1e-07  Score=67.76  Aligned_cols=14  Identities=7%  Similarity=0.195  Sum_probs=7.3

Q ss_pred             CccEEEccCCCccc
Q psy16571         83 ELRTIDIAENPIEC   96 (150)
Q Consensus        83 ~L~~L~l~~N~~~c   96 (150)
                      +|+.|++++|.+..
T Consensus       314 ~L~~L~L~~n~l~~  327 (461)
T 1z7x_W          314 QLESLWVKSCSFTA  327 (461)
T ss_dssp             CCCEEECTTSCCBG
T ss_pred             cceeeEcCCCCCch
Confidence            45555555555444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.09  E-value=1e-05  Score=59.01  Aligned_cols=86  Identities=15%  Similarity=0.235  Sum_probs=58.9

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC-C
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-W   81 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~-~   81 (150)
                      .+|.+...|+.+.+..+  ++.+...+|..+..|+.+.+..+  +..+...+|.++.+|+.+.+.++.+..++...|. +
T Consensus       234 ~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c  309 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDC  309 (379)
T ss_dssp             TTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTC
T ss_pred             ccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCC
Confidence            45666777777777653  67777777777777777777543  6667777777777777777777777777665554 5


Q ss_pred             CCccEEEccCC
Q psy16571         82 PELRTIDIAEN   92 (150)
Q Consensus        82 ~~L~~L~l~~N   92 (150)
                      .+|+.+.+..+
T Consensus       310 ~~L~~i~lp~~  320 (379)
T 4h09_A          310 VKLSSVTLPTA  320 (379)
T ss_dssp             TTCCEEECCTT
T ss_pred             CCCCEEEcCcc
Confidence            67777776543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.06  E-value=1.2e-06  Score=64.09  Aligned_cols=87  Identities=20%  Similarity=0.229  Sum_probs=49.3

Q ss_pred             ccccceeccCCCcCcccccCccc-----CCCCCCCEEeCCCCCCCCccchh----hcCCCCCCCeEecCCCCcccc----
Q psy16571          8 LSYLKRLEITGASNLTRVRKGAF-----ADNLNLETLTLNKNPKLKIIEED----ALVGLPNLYHLNLKENAFTSF----   74 (150)
Q Consensus         8 l~~L~~L~l~~n~~l~~i~~~~~-----~~l~~L~~l~l~~n~~l~~~~~~----~~~~l~~L~~l~l~~n~l~~l----   74 (150)
                      +.+|+.|++++| .++......+     ...+.|+.|++++|. ++.....    .+...++|+.|+|++|.++..    
T Consensus       125 L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~  202 (372)
T 3un9_A          125 FLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLEL  202 (372)
T ss_dssp             HHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHH
T ss_pred             HHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHH
Confidence            345566666666 6554433222     234567777777774 6543222    234566777777777776632    


Q ss_pred             -CcCcCCCCCccEEEccCCCccc
Q psy16571         75 -SESMLAWPELRTIDIAENPIEC   96 (150)
Q Consensus        75 -p~~~~~~~~L~~L~l~~N~~~c   96 (150)
                       ...+...++|+.|++++|.+.-
T Consensus       203 L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          203 LAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHHHGGGCSCCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCcCeEECCCCCCCH
Confidence             2233345677777777776643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.06  E-value=9.6e-06  Score=59.55  Aligned_cols=87  Identities=21%  Similarity=0.315  Sum_probs=65.6

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW   81 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~   81 (150)
                      ..+|.++.+|+.+.+..  .++.|...+|.++.+|+.+.+..+  ++.+...+|.++.+|+.+.+.++... + ..++.+
T Consensus       304 ~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~  377 (394)
T 4gt6_A          304 ESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTD  377 (394)
T ss_dssp             TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCC
T ss_pred             ceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceee-h-hhhhcc
Confidence            46799999999999986  499999999999999999999755  89999999999999999999987543 2 345567


Q ss_pred             CCccEEEccCCCc
Q psy16571         82 PELRTIDIAENPI   94 (150)
Q Consensus        82 ~~L~~L~l~~N~~   94 (150)
                      ..|+.+.+..|..
T Consensus       378 ~~L~~i~i~~~~~  390 (394)
T 4gt6_A          378 SGLQNLPVAPGSI  390 (394)
T ss_dssp             CCC----------
T ss_pred             CCCCEEEeCCCCE
Confidence            7888888776643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.02  E-value=1.2e-05  Score=59.12  Aligned_cols=81  Identities=16%  Similarity=0.263  Sum_probs=67.7

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW   81 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~   81 (150)
                      ..+|.++.+|+.+++..  .++.+...+|.++.+|+.+.+..+  +..+...+|.++.+|+.+.+..+ +..+...+.++
T Consensus       313 ~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c  387 (394)
T 4fs7_A          313 EEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDT  387 (394)
T ss_dssp             TTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTT
T ss_pred             hhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCC
Confidence            46799999999999985  599999999999999999999866  88999999999999999999754 55555556667


Q ss_pred             CCccEE
Q psy16571         82 PELRTI   87 (150)
Q Consensus        82 ~~L~~L   87 (150)
                      .+|+.+
T Consensus       388 ~~L~~I  393 (394)
T 4fs7_A          388 TKFKWI  393 (394)
T ss_dssp             CEEEEE
T ss_pred             CCCcEE
Confidence            777654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.98  E-value=3.5e-05  Score=56.12  Aligned_cols=86  Identities=14%  Similarity=0.186  Sum_probs=61.7

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC-C
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-W   81 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~-~   81 (150)
                      .+|.+...|+.+.+..  .+..++..+|.++.+|+.+.+.++. ++.+...+|.++.+|+.+.|..+ ++.+....|. +
T Consensus       257 ~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C  332 (379)
T 4h09_A          257 FLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC  332 (379)
T ss_dssp             TTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             cccceeehhccccccc--cceeccccccccccccccccccccc-cceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence            4567777777777764  4777777778888888888887774 77787778888888888887644 6677665554 6


Q ss_pred             CCccEEEccCC
Q psy16571         82 PELRTIDIAEN   92 (150)
Q Consensus        82 ~~L~~L~l~~N   92 (150)
                      .+|+.+.+..+
T Consensus       333 ~~L~~i~ip~~  343 (379)
T 4h09_A          333 KALSTISYPKS  343 (379)
T ss_dssp             TTCCCCCCCTT
T ss_pred             CCCCEEEECCc
Confidence            67777766543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.88  E-value=3.4e-05  Score=48.16  Aligned_cols=55  Identities=22%  Similarity=0.279  Sum_probs=45.1

Q ss_pred             ceeccCCCcCcc--cccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCc
Q psy16571         12 KRLEITGASNLT--RVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAF   71 (150)
Q Consensus        12 ~~L~l~~n~~l~--~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l   71 (150)
                      ..++.+++ .++  .+|...   ..+|+.|+|++|. |+.++...|..+++|+.|+|++|.+
T Consensus        11 ~~v~Cs~~-~L~~~~vP~~l---p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           11 TLVDCGRR-GLTWASLPTAF---PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TEEECCSS-CCCTTTSCSCC---CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CEEEeCCC-CCccccCCCCC---CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence            46788888 888  777542   2368999999996 9999999899999999999999976

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.83  E-value=2.7e-06  Score=56.30  Aligned_cols=92  Identities=14%  Similarity=0.155  Sum_probs=57.5

Q ss_pred             ccCccccceeccCCCcCccccc----CcccCCCCCCCEEeCCCCCCCCccch----hhcCCCCCCCeEecCCCCccc---
Q psy16571          5 VKGLSYLKRLEITGASNLTRVR----KGAFADNLNLETLTLNKNPKLKIIEE----DALVGLPNLYHLNLKENAFTS---   73 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~----~~~~~~l~~L~~l~l~~n~~l~~~~~----~~~~~l~~L~~l~l~~n~l~~---   73 (150)
                      +...+.|++|++++|+.++...    ...+...++|+.|++++|. +.....    ..+...+.|+.|+|++|.|..   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3456678888888763443311    1234556778888888885 764221    223345678888888888764   


Q ss_pred             --cCcCcCCCCCccEEEc--cCCCcccc
Q psy16571         74 --FSESMLAWPELRTIDI--AENPIECG   97 (150)
Q Consensus        74 --lp~~~~~~~~L~~L~l--~~N~~~c~   97 (150)
                        +...+...+.|+.|++  ++|.+...
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence              3334445667888888  77777653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.83  E-value=8.3e-06  Score=53.61  Aligned_cols=84  Identities=11%  Similarity=0.124  Sum_probs=62.4

Q ss_pred             cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCC----CCCCeEecCCC-Cccc--cCcCcCCC
Q psy16571          9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGL----PNLYHLNLKEN-AFTS--FSESMLAW   81 (150)
Q Consensus         9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l----~~L~~l~l~~n-~l~~--lp~~~~~~   81 (150)
                      -.|+.|+++++ .++...-..+.++++|+.|+++++..++.-.-..+..+    ++|+.|+|+++ .++.  + ..+..+
T Consensus        61 ~~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHF  138 (176)
T ss_dssp             CCEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGC
T ss_pred             ceEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcC
Confidence            46899999999 78877666788999999999999864655433334443    37999999987 4763  3 234468


Q ss_pred             CCccEEEccCCCc
Q psy16571         82 PELRTIDIAENPI   94 (150)
Q Consensus        82 ~~L~~L~l~~N~~   94 (150)
                      ++|+.|++++.+-
T Consensus       139 ~~L~~L~L~~c~~  151 (176)
T 3e4g_A          139 RNLKYLFLSDLPG  151 (176)
T ss_dssp             TTCCEEEEESCTT
T ss_pred             CCCCEEECCCCCC
Confidence            9999999987653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.65  E-value=5.2e-06  Score=63.67  Aligned_cols=62  Identities=18%  Similarity=0.193  Sum_probs=29.6

Q ss_pred             CCCCCEEeCCCCCCCCccc-hhhcCCCCCCCeEecCCCCccc--cCcCcCCCCCccEEEccCCCcc
Q psy16571         33 NLNLETLTLNKNPKLKIIE-EDALVGLPNLYHLNLKENAFTS--FSESMLAWPELRTIDIAENPIE   95 (150)
Q Consensus        33 l~~L~~l~l~~n~~l~~~~-~~~~~~l~~L~~l~l~~n~l~~--lp~~~~~~~~L~~L~l~~N~~~   95 (150)
                      +++|+.|++++|. ++... +..+..+++|+.|++++|.++.  ++..+..+++|+.|++++|.++
T Consensus       462 ~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          462 SPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             CTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             CccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            4555555555553 44321 1223445555566665555442  2222223455556666555543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.62  E-value=2.6e-05  Score=51.53  Aligned_cols=91  Identities=15%  Similarity=0.155  Sum_probs=62.9

Q ss_pred             ccCccccceeccCCCcCcccccC----cccCCCCCCCEEeCCCCCCCCccc----hhhcCCCCCCCeEec--CCCCccc-
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRK----GAFADNLNLETLTLNKNPKLKIIE----EDALVGLPNLYHLNL--KENAFTS-   73 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~----~~~~~l~~L~~l~l~~n~~l~~~~----~~~~~~l~~L~~l~l--~~n~l~~-   73 (150)
                      +...+.|++|++++| .++....    ..+...+.|+.|++++|. ++...    ..++...+.|+.|+|  ++|.+.. 
T Consensus        61 L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A           61 LKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             HTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence            345578899999998 8765321    234445789999999996 87632    234556678999999  7888874 


Q ss_pred             ----cCcCcCCCCCccEEEccCCCcccc
Q psy16571         74 ----FSESMLAWPELRTIDIAENPIECG   97 (150)
Q Consensus        74 ----lp~~~~~~~~L~~L~l~~N~~~c~   97 (150)
                          +...+...+.|+.|++++|.+.-.
T Consensus       139 g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          139 VEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             HHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence                223333467899999998887643

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.45  E-value=1.8e-05  Score=60.71  Aligned_cols=80  Identities=13%  Similarity=0.070  Sum_probs=33.8

Q ss_pred             ccccceeccCCCcCcccccC----cccCCCCCCCEEeCCCCCCCCccch----hhcCCCCCCCeEecCCCCccccCcCcC
Q psy16571          8 LSYLKRLEITGASNLTRVRK----GAFADNLNLETLTLNKNPKLKIIEE----DALVGLPNLYHLNLKENAFTSFSESML   79 (150)
Q Consensus         8 l~~L~~L~l~~n~~l~~i~~----~~~~~l~~L~~l~l~~n~~l~~~~~----~~~~~l~~L~~l~l~~n~l~~lp~~~~   79 (150)
                      +++|++|++++| .+.....    ..+..+++|+.|++++|. ++.+..    ..+..+++|+.|++++|.+..++..+.
T Consensus       163 ~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~  240 (592)
T 3ogk_B          163 CRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK  240 (592)
T ss_dssp             CTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred             CCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence            345555555555 4332211    122234455555555553 432221    112334555555555555444443333


Q ss_pred             CCCCccEEEc
Q psy16571         80 AWPELRTIDI   89 (150)
Q Consensus        80 ~~~~L~~L~l   89 (150)
                      .+++|+.|.+
T Consensus       241 ~~~~L~~L~l  250 (592)
T 3ogk_B          241 AAANLEEFCG  250 (592)
T ss_dssp             HCTTCCEEEE
T ss_pred             hhhHHHhhcc
Confidence            3344444444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.38  E-value=1.5e-05  Score=61.05  Aligned_cols=85  Identities=15%  Similarity=0.169  Sum_probs=50.4

Q ss_pred             CccccceeccCCCcCcccccCcccC-CCCCCCEEeCCCCCCCCccchhhc-CCCCCCCeEecCCCCcccc--CcCcCCCC
Q psy16571          7 GLSYLKRLEITGASNLTRVRKGAFA-DNLNLETLTLNKNPKLKIIEEDAL-VGLPNLYHLNLKENAFTSF--SESMLAWP   82 (150)
Q Consensus         7 ~l~~L~~L~l~~n~~l~~i~~~~~~-~l~~L~~l~l~~n~~l~~~~~~~~-~~l~~L~~l~l~~n~l~~l--p~~~~~~~   82 (150)
                      ++++|+.|+++++  ++......+. .+++|+.|++++|. ++......+ ..+++|+.|++++|.++..  ...+..++
T Consensus       430 ~~~~L~~L~L~~~--l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          430 HCKDLRRLSLSGL--LTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             HCTTCCEEECCSS--CCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             hCCCccEEeecCc--ccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence            3455666666442  3222211222 26677788887775 654433332 4578888888888887532  22333467


Q ss_pred             CccEEEccCCCc
Q psy16571         83 ELRTIDIAENPI   94 (150)
Q Consensus        83 ~L~~L~l~~N~~   94 (150)
                      +|+.|++++|++
T Consensus       507 ~L~~L~l~~~~~  518 (594)
T 2p1m_B          507 TMRSLWMSSCSV  518 (594)
T ss_dssp             GSSEEEEESSCC
T ss_pred             CCCEEeeeCCCC
Confidence            888888888877

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.13  E-value=9.4e-05  Score=56.64  Aligned_cols=85  Identities=16%  Similarity=0.155  Sum_probs=44.2

Q ss_pred             ccccceeccCCCcCcccccCcccC-CCCCCCEEeCCCCCCCCcc-chhhcCCCCCCCeEecCCCCcccc-----CcCcCC
Q psy16571          8 LSYLKRLEITGASNLTRVRKGAFA-DNLNLETLTLNKNPKLKII-EEDALVGLPNLYHLNLKENAFTSF-----SESMLA   80 (150)
Q Consensus         8 l~~L~~L~l~~n~~l~~i~~~~~~-~l~~L~~l~l~~n~~l~~~-~~~~~~~l~~L~~l~l~~n~l~~l-----p~~~~~   80 (150)
                      +++|++|++++| .++......+. .+++|+.|++++|..++.. .+..+..+++|+.|++++|.++..     +.....
T Consensus       104 ~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          104 YTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             CTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             CCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            456667777766 55544333332 4566777777666213321 112223466777777777665432     111223


Q ss_pred             CCCccEEEccCCC
Q psy16571         81 WPELRTIDIAENP   93 (150)
Q Consensus        81 ~~~L~~L~l~~N~   93 (150)
                      +++|+.|++++|.
T Consensus       183 ~~~L~~L~l~~~~  195 (594)
T 2p1m_B          183 YTSLVSLNISCLA  195 (594)
T ss_dssp             CCCCCEEECTTCC
T ss_pred             CCcCcEEEecccC
Confidence            5566666666554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.03  E-value=0.0002  Score=52.25  Aligned_cols=61  Identities=16%  Similarity=0.182  Sum_probs=32.2

Q ss_pred             CCCCCEEeCCCCCCCCccchhhc---CCCCCCCeEecCCCCccc-----cCcCcCCCCCccEEEccCCCc
Q psy16571         33 NLNLETLTLNKNPKLKIIEEDAL---VGLPNLYHLNLKENAFTS-----FSESMLAWPELRTIDIAENPI   94 (150)
Q Consensus        33 l~~L~~l~l~~n~~l~~~~~~~~---~~l~~L~~l~l~~n~l~~-----lp~~~~~~~~L~~L~l~~N~~   94 (150)
                      +++|+.|++.+|. +.......+   ..+++|+.|+|+.|.+..     +...+..+++|+.|+++.|.+
T Consensus       251 ~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          251 FPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             CTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             CCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            5666666666663 542111111   235666777776666653     222223356677777766654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.91  E-value=0.0002  Score=46.97  Aligned_cols=69  Identities=13%  Similarity=0.126  Sum_probs=51.6

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCC----CCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCC-cc
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADN----LNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENA-FT   72 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l----~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~-l~   72 (150)
                      .+.++++|+.|+++++..++.-.-..+..+    ++|+.|+++++..++.-.-..+..+++|+.|++++.. ++
T Consensus        80 ~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A           80 HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred             HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence            356789999999999955765443445544    3799999999865776555556778999999999873 44

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.88  E-value=0.0087  Score=43.60  Aligned_cols=55  Identities=29%  Similarity=0.363  Sum_probs=23.7

Q ss_pred             CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhc--CCCCCCCeEec
Q psy16571          7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDAL--VGLPNLYHLNL   66 (150)
Q Consensus         7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~--~~l~~L~~l~l   66 (150)
                      .+++|+.|.++++ .-..+++  +. +++|+.|++..+. +..-....+  ..+++|+.|+|
T Consensus       170 ~~P~L~~L~L~g~-~~l~l~~--~~-~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L  226 (362)
T 2ra8_A          170 AMPLLNNLKIKGT-NNLSIGK--KP-RPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVL  226 (362)
T ss_dssp             TCTTCCEEEEECC-BTCBCCS--CB-CTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEE
T ss_pred             cCCCCcEEEEeCC-CCceecc--cc-CCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEE
Confidence            3455666666555 2112221  21 4455555555442 332111111  13555666555

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=95.72  E-value=0.019  Score=33.90  Aligned_cols=50  Identities=22%  Similarity=0.359  Sum_probs=41.7

Q ss_pred             CCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCC
Q psy16571         18 GASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENA   70 (150)
Q Consensus        18 ~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~   70 (150)
                      +. .++.|...+|.++.+|+.+.+..+  ++.|...+|.++.+|+.+.+.+..
T Consensus         5 g~-~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~~   54 (100)
T 2lz0_A            5 GE-PVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGED   54 (100)
T ss_dssp             CC-CCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred             CC-ccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCCC
Confidence            44 678888889999999999999865  888888899999999988887653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.26  E-value=0.01  Score=39.61  Aligned_cols=84  Identities=18%  Similarity=0.232  Sum_probs=54.2

Q ss_pred             ccccceeccCCCcCcccc----cCcccCCCCCCCEEeCCCCCCCCccch----hhcCCCCCCCeEecCCCCccc-----c
Q psy16571          8 LSYLKRLEITGASNLTRV----RKGAFADNLNLETLTLNKNPKLKIIEE----DALVGLPNLYHLNLKENAFTS-----F   74 (150)
Q Consensus         8 l~~L~~L~l~~n~~l~~i----~~~~~~~l~~L~~l~l~~n~~l~~~~~----~~~~~l~~L~~l~l~~n~l~~-----l   74 (150)
                      -+.|++|++++|+.+..-    -..++..-..|+.|+|++|. ++....    .++..-..|+.|+|++|.|..     +
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            356888888874255432    12345556789999999885 764332    223345788999999998863     2


Q ss_pred             CcCcCCCCCccEEEccCC
Q psy16571         75 SESMLAWPELRTIDIAEN   92 (150)
Q Consensus        75 p~~~~~~~~L~~L~l~~N   92 (150)
                      -..+.....|+.|+|++|
T Consensus       119 a~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHTTTTCCCSEEECCCC
T ss_pred             HHHHhhCCceeEEECCCC
Confidence            223344567889998764

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=94.18  E-value=0.11  Score=30.59  Aligned_cols=42  Identities=17%  Similarity=0.298  Sum_probs=37.3

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP   45 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~   45 (150)
                      ..+|.+..+|+.+.|..+  ++.|...+|.++.+|+.+.+....
T Consensus        13 ~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~~   54 (100)
T 2lz0_A           13 KSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGED   54 (100)
T ss_dssp             SCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred             HHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCCC
Confidence            467999999999999965  999999999999999999997653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.67  E-value=0.031  Score=37.19  Aligned_cols=88  Identities=8%  Similarity=0.101  Sum_probs=59.7

Q ss_pred             cCccccceeccCCCcCcccccCcc----cCCCCCCCEEeCCCCCCCCccch----hhcCCCCCCCeEecCCCC---ccc-
Q psy16571          6 KGLSYLKRLEITGASNLTRVRKGA----FADNLNLETLTLNKNPKLKIIEE----DALVGLPNLYHLNLKENA---FTS-   73 (150)
Q Consensus         6 ~~l~~L~~L~l~~n~~l~~i~~~~----~~~l~~L~~l~l~~n~~l~~~~~----~~~~~l~~L~~l~l~~n~---l~~-   73 (150)
                      ..-..|+.|+|++| .++.....+    +..-..|+.|+|++|. |+....    .++..-..|+.|+|++|.   +.. 
T Consensus        67 ~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~  144 (197)
T 1pgv_A           67 CNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  144 (197)
T ss_dssp             TTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             hhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence            33467999999999 887544323    3345789999999996 875332    345566789999998763   331 


Q ss_pred             ----cCcCcCCCCCccEEEccCCCcc
Q psy16571         74 ----FSESMLAWPELRTIDIAENPIE   95 (150)
Q Consensus        74 ----lp~~~~~~~~L~~L~l~~N~~~   95 (150)
                          +-..+...+.|..|+++.|...
T Consensus       145 g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          145 VEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHHHhCCCcCeEeccCCCcc
Confidence                2222333678999999876544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	150
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-12
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-11
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-08
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 3e-12
 Identities = 33/143 (23%), Positives = 49/143 (34%), Gaps = 28/143 (19%)

Query: 21  NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML- 79
            L  +    F D  NL  L L+ N ++  + E A  GL +L  L L +N           
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 80  ------------------------AWPELRTIDIAENPIECGCNILWLREMLVRRNTSA- 114
                                       L+ + + +NP  C C    L   L +   S+ 
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSS 258

Query: 115 -VFCNSPAPLKYKSLISLSAEDL 136
            V C+ P  L  + L  L+A DL
Sbjct: 259 EVPCSLPQRLAGRDLKRLAANDL 281

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 5e-11
 Identities = 19/75 (25%), Positives = 28/75 (37%)

Query: 50  IEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVR 109
           +    L GL NL  L L+EN+  +  +       L    +  NP  C C IL+ R  L  
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQD 222

Query: 110 RNTSAVFCNSPAPLK 124
              +         +K
Sbjct: 223 NAENVYVWKQGVDVK 237

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.9 bits (112), Expect = 4e-08
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 44  NPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILW 102
             K+K I     +GL  L  LNL +N  +            L ++++A NP  C C++ W
Sbjct: 87  ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW 146

Query: 103 LREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDL 136
             E L +++    A  C +P+ ++   +  L   + 
Sbjct: 147 FAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF 182

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 2e-06
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 28/112 (25%)

Query: 41  LNKNPKLKIIEEDALVGLPNLYHLNLK------------------------ENAFTSFSE 76
           +     L+ +E   L GL  L +L +                          NA  S S 
Sbjct: 38  IENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97

Query: 77  SMLAWPELRTIDIAENPIECGCNILWLREMLVRR----NTSAVFCNSPAPLK 124
             +    L+ + ++ NP+ C C + WL+              + C+   PL 
Sbjct: 98  KTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLA 149

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 7e-05
 Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 3/131 (2%)

Query: 9   SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 68
                L++   + +T ++ G F +  NL TL L  N K+  I   A   L  L  L L +
Sbjct: 31  PDTALLDLQN-NKITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYLSK 88

Query: 69  NAFTSFSESMLAWP-ELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKS 127
           N      E M     ELR  +     +         + ++V   T+ +  +      ++ 
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 128 LISLSAEDLGS 138
           +  LS   +  
Sbjct: 149 MKKLSYIRIAD 159

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.0 bits (81), Expect = 0.001
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 8/62 (12%)

Query: 35  NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
           +LE L ++ N KL  +        P L  L    N      E       L+ + +  NP+
Sbjct: 285 SLEELNVSNN-KLIELPA----LPPRLERLIASFNHLAEVPELP---QNLKQLHVEYNPL 336

Query: 95  EC 96
             
Sbjct: 337 RE 338

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 0.002
 Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 33 NLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-----SFSESMLAWPELRTI 87
          +L++++L +           + L  L     + L +   T       S ++   P L  +
Sbjct: 1  SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 88 DIAENPI 94
          ++  N +
Sbjct: 61 NLRSNEL 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.95
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.37
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.36
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.31
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.26
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.25
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.2
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.07
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.04
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.03
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.93
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.92
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.9
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.83
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.83
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.83
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.81
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.77
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.73
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.6
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.6
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.39
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.37
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.29
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.8
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.61
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.45
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.37
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.19
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.0
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.37
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.66
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.41

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=4.6e-27  Score=156.68  Aligned_cols=139  Identities=24%  Similarity=0.473  Sum_probs=128.3

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-C
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-A   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~   80 (150)
                      +..|.++++|++|++++| .+..++++.|..+++|+.|++++|+ ++.+++.+|.++++|+.|+|++|.|+.++...+ .
T Consensus        47 ~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~  124 (192)
T d1w8aa_          47 DGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH  124 (192)
T ss_dssp             SCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT
T ss_pred             ccccCCCceEeeeecccc-ccccccccccccccccceeeecccc-ccccCHHHHhCCCcccccccCCccccccCHHHhcC
Confidence            457889999999999999 9999999999999999999999996 999999999999999999999999999988766 4


Q ss_pred             CCCccEEEccCCCcccccChHHHHHHHhhcC--CCCeeeCCCccccCccccccccccCCCCCcc
Q psy16571         81 WPELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDLGSRVRA  142 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~--~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~~  142 (150)
                      +++|+++++++|+|.|+|++.|+..|+....  ...++|..|..++|..+.++..+++.|..+.
T Consensus       125 l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~l~~~~l~~L~~n~l~C~~~~  188 (192)
T d1w8aa_         125 LNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSEN  188 (192)
T ss_dssp             CTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTTCCCCCC-
T ss_pred             CcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCChhhcCCEeeecCHhhCcCCCCC
Confidence            8999999999999999999999999988764  5778999999999999999999999998764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-26  Score=148.89  Aligned_cols=126  Identities=25%  Similarity=0.365  Sum_probs=114.3

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW   81 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~   81 (150)
                      |..+.++++|++|++++|+.++.+++.+|.++++|+.|++++|. |+.+++.+|..+++|+.|+|++|+|+.+|..++..
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~  102 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG  102 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS
T ss_pred             cccccCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCcccccccccccccceeccCCCCcccChhhhcc
Confidence            45677889999999987746999999999999999999999996 99999999999999999999999999999999887


Q ss_pred             CCccEEEccCCCcccccChHHHHHHHhhcC----CCCeeeCCCccccCccc
Q psy16571         82 PELRTIDIAENPIECGCNILWLREMLVRRN----TSAVFCNSPAPLKYKSL  128 (150)
Q Consensus        82 ~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~----~~~~~C~~~~~l~~~~~  128 (150)
                      ..++.|+|++|+|.|+|++.|+..|.....    ..++.|.+|..++|.+.
T Consensus       103 ~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~p~  153 (156)
T d2ifga3         103 LSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPN  153 (156)
T ss_dssp             CCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCCC
T ss_pred             ccccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHCcCCc
Confidence            789999999999999999999999997653    56799999998888653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.3e-24  Score=152.47  Aligned_cols=135  Identities=26%  Similarity=0.410  Sum_probs=122.9

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLA   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~   80 (150)
                      +.+|..+.+|+.|++++| .++.+++.+|.++++|+.+++++|. +..+.+..|..+++|+.+++++|.+..++.. +..
T Consensus       146 ~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~  223 (284)
T d1ozna_         146 DDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP  223 (284)
T ss_dssp             TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred             hhHhccccchhhcccccC-cccccchhhhccccccchhhhhhcc-ccccChhHhhhhhhccccccccccccccccccccc
Confidence            567888899999999999 9999999999999999999999996 9999888999999999999999999988764 456


Q ss_pred             CCCccEEEccCCCcccccChHHHHHHHhhcC--CCCeeeCCCccccCccccccccccC-CC
Q psy16571         81 WPELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDL-GS  138 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~--~~~~~C~~~~~l~~~~~~~~~~~~~-~C  138 (150)
                      +++|+.|++++|+|.|||++.|+..|+++..  ..++.|+.|..++|+++.++..+++ .|
T Consensus       224 ~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C~~p~~l~g~~l~~l~~~~l~gc  284 (284)
T d1ozna_         224 LRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC  284 (284)
T ss_dssp             CTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             ccccCEEEecCCCCCCCccchHHHHHHHhCcCCCCceEeCCchHHcCCccccCCHHHCCCc
Confidence            8999999999999999999999999999875  6789999999999999999999888 44

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.6e-22  Score=138.76  Aligned_cols=106  Identities=29%  Similarity=0.455  Sum_probs=97.7

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWP   82 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~   82 (150)
                      ..+..+.+++.|++++| .+..+++..+..++.++.+++++|. ++.+++..|..+++|+.|+|++|+|+.+|.+++.++
T Consensus       118 ~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~  195 (266)
T d1p9ag_         118 GALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH  195 (266)
T ss_dssp             STTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ccccccccccccccccc-ccceeccccccccccchhccccccc-ccccCccccccccccceeecccCCCcccChhHCCCC
Confidence            45667788888888888 8889998889999999999999996 999999989999999999999999999999999999


Q ss_pred             CccEEEccCCCcccccChHHHHHHHhhc
Q psy16571         83 ELRTIDIAENPIECGCNILWLREMLVRR  110 (150)
Q Consensus        83 ~L~~L~l~~N~~~c~c~~~~l~~~~~~~  110 (150)
                      +|+.|+|++|||.|||++.||..|++..
T Consensus       196 ~L~~L~L~~Np~~CdC~~~~l~~wl~~~  223 (266)
T d1p9ag_         196 LLPFAFLHGNPWLCNCEILYFRRWLQDN  223 (266)
T ss_dssp             CCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred             CCCEEEecCCCCCCCcchHHHHHHHHhc
Confidence            9999999999999999999999999764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=4.9e-14  Score=86.79  Aligned_cols=92  Identities=22%  Similarity=0.325  Sum_probs=79.1

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc--CcCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLAW   81 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~--~~~~~   81 (150)
                      .+.++..|++|++++| .++.+++ .+..+++|+.+++++|. ++.++.  +..+++|+.+++++|+++.++.  .+..+
T Consensus        15 ~l~~l~~L~~L~ls~N-~l~~lp~-~~~~l~~L~~L~l~~N~-i~~l~~--~~~l~~L~~L~l~~N~i~~~~~~~~l~~~   89 (124)
T d1dcea3          15 HLEQLLLVTHLDLSHN-RLRALPP-ALAALRCLEVLQASDNA-LENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSC   89 (124)
T ss_dssp             CGGGGTTCCEEECCSS-CCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GTTCSSCCEEECCSSCCCSSSTTGGGGGC
T ss_pred             ccccCCCCCEEECCCC-ccCcchh-hhhhhhccccccccccc-ccccCc--cccccccCeEECCCCccCCCCCchhhcCC
Confidence            3678889999999999 9999975 57889999999999996 998863  7889999999999999998874  45668


Q ss_pred             CCccEEEccCCCcccccCh
Q psy16571         82 PELRTIDIAENPIECGCNI  100 (150)
Q Consensus        82 ~~L~~L~l~~N~~~c~c~~  100 (150)
                      ++|+.+++++|++......
T Consensus        90 ~~L~~L~l~~N~i~~~~~~  108 (124)
T d1dcea3          90 PRLVLLNLQGNSLCQEEGI  108 (124)
T ss_dssp             TTCCEEECTTSGGGGSSSC
T ss_pred             CCCCEEECCCCcCCcCccH
Confidence            9999999999999776554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.46  E-value=2.1e-13  Score=89.72  Aligned_cols=87  Identities=29%  Similarity=0.427  Sum_probs=78.9

Q ss_pred             cccceeccCCCcCccc-ccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC-CCCccE
Q psy16571          9 SYLKRLEITGASNLTR-VRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRT   86 (150)
Q Consensus         9 ~~L~~L~l~~n~~l~~-i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~-~~~L~~   86 (150)
                      ..+++|++++| .++. ++...|.++++|+.|++++|. +..+++..|..+++|+.|+|++|+|+.++...|. +++|+.
T Consensus        29 ~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~  106 (192)
T d1w8aa_          29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred             CCCCEEEeCCC-CCcccccccccCCCceEeeeeccccc-cccccccccccccccceeeeccccccccCHHHHhCCCcccc
Confidence            47899999999 9975 778889999999999999996 9999999999999999999999999999887654 999999


Q ss_pred             EEccCCCcccc
Q psy16571         87 IDIAENPIECG   97 (150)
Q Consensus        87 L~l~~N~~~c~   97 (150)
                      |+|++|.+..-
T Consensus       107 L~L~~N~l~~i  117 (192)
T d1w8aa_         107 LNLYDNQISCV  117 (192)
T ss_dssp             EECCSSCCCEE
T ss_pred             cccCCcccccc
Confidence            99999998763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.7e-13  Score=88.08  Aligned_cols=91  Identities=14%  Similarity=0.224  Sum_probs=55.7

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-CCCC
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-AWPE   83 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~~~~   83 (150)
                      |.+...+++|++++| .++.++. .+..+++|+.+++++|. ++.++  .|..+++|+.|++++|.++.++..++ .+++
T Consensus        14 ~~n~~~lr~L~L~~n-~I~~i~~-~~~~l~~L~~L~Ls~N~-i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNE-IRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSC-CCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             ccCcCcCcEEECCCC-CCCccCc-cccccccCCEEECCCCC-CCccC--CcccCcchhhhhcccccccCCCccccccccc
Confidence            455556666777766 6666643 44556666777777664 66653  25566666666666666666665543 3566


Q ss_pred             ccEEEccCCCcccccCh
Q psy16571         84 LRTIDIAENPIECGCNI  100 (150)
Q Consensus        84 L~~L~l~~N~~~c~c~~  100 (150)
                      |+.|++++|.+..-.++
T Consensus        89 L~~L~L~~N~i~~~~~l  105 (162)
T d1a9na_          89 LTELILTNNSLVELGDL  105 (162)
T ss_dssp             CCEEECCSCCCCCGGGG
T ss_pred             cccceeccccccccccc
Confidence            66666666666544333

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.7e-13  Score=85.92  Aligned_cols=94  Identities=21%  Similarity=0.304  Sum_probs=81.1

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc--CcC
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SML   79 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~--~~~   79 (150)
                      ++.+..+.+|+.|++++| .++.++  .|..+++|+.|++++|. ++.+++..+..+++|+.|++++|.++.++.  .+.
T Consensus        34 ~~~~~~l~~L~~L~Ls~N-~i~~l~--~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~  109 (162)
T d1a9na_          34 ENLGATLDQFDAIDFSDN-EIRKLD--GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLA  109 (162)
T ss_dssp             CCGGGGTTCCSEEECCSS-CCCEEC--CCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGG
T ss_pred             CccccccccCCEEECCCC-CCCccC--CcccCcchhhhhccccc-ccCCCccccccccccccceeccccccccccccccc
Confidence            344567889999999999 999985  48899999999999996 999988777789999999999999998865  455


Q ss_pred             CCCCccEEEccCCCcccccC
Q psy16571         80 AWPELRTIDIAENPIECGCN   99 (150)
Q Consensus        80 ~~~~L~~L~l~~N~~~c~c~   99 (150)
                      .+++|+.+++++|++.....
T Consensus       110 ~l~~L~~L~l~~N~i~~~~~  129 (162)
T d1a9na_         110 SLKSLTYLCILRNPVTNKKH  129 (162)
T ss_dssp             GCTTCCEEECCSSGGGGSTT
T ss_pred             cccccchhhcCCCccccccc
Confidence            68999999999999966554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.36  E-value=1.7e-12  Score=90.70  Aligned_cols=85  Identities=21%  Similarity=0.373  Sum_probs=48.6

Q ss_pred             cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEE
Q psy16571          9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTID   88 (150)
Q Consensus         9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~   88 (150)
                      ++|+.|++++| ......+..|.+++.++.+++++|. +..+++..|.++++|+.|+|++|+|+.+|.++..+++|+.|+
T Consensus       171 ~~L~~L~l~~n-~~~~~~~~~~~~~~~l~~L~~s~n~-l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~  248 (305)
T d1xkua_         171 PSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVY  248 (305)
T ss_dssp             TTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEE
T ss_pred             CccCEEECCCC-cCCCCChhHhhcccccccccccccc-ccccccccccccccceeeecccccccccccccccccCCCEEE
Confidence            45555556555 5555555555555556666665553 555555555555556666666666555555555555666666


Q ss_pred             ccCCCcc
Q psy16571         89 IAENPIE   95 (150)
Q Consensus        89 l~~N~~~   95 (150)
                      +++|++.
T Consensus       249 Ls~N~i~  255 (305)
T d1xkua_         249 LHNNNIS  255 (305)
T ss_dssp             CCSSCCC
T ss_pred             CCCCccC
Confidence            6555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=3.8e-12  Score=78.09  Aligned_cols=83  Identities=23%  Similarity=0.339  Sum_probs=72.5

Q ss_pred             ceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEEccC
Q psy16571         12 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAE   91 (150)
Q Consensus        12 ~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~l~~   91 (150)
                      +.|++++| .++.++.  +..++.|+++++++|. ++.+++ .|..+++|+.|++++|.++.+|. +..+++|+.+++++
T Consensus         1 R~L~Ls~n-~l~~l~~--l~~l~~L~~L~ls~N~-l~~lp~-~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNR-LRALPP-ALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTS-CCSSCCC--GGGGTTCCEEECCSSC-CCCCCG-GGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred             CEEEcCCC-CCCCCcc--cccCCCCCEEECCCCc-cCcchh-hhhhhhcccccccccccccccCc-cccccccCeEECCC
Confidence            57899999 9998864  7889999999999996 999876 47889999999999999999974 77899999999999


Q ss_pred             CCcccccCh
Q psy16571         92 NPIECGCNI  100 (150)
Q Consensus        92 N~~~c~c~~  100 (150)
                      |.+.-...+
T Consensus        75 N~i~~~~~~   83 (124)
T d1dcea3          75 NRLQQSAAI   83 (124)
T ss_dssp             SCCCSSSTT
T ss_pred             CccCCCCCc
Confidence            998754443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.4e-11  Score=83.44  Aligned_cols=92  Identities=27%  Similarity=0.318  Sum_probs=73.6

Q ss_pred             ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-CC
Q psy16571          3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-AW   81 (150)
Q Consensus         3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~~   81 (150)
                      ..|.++++|+.|++++| .+..++...+..+.+++.+++++|. +..+++..+..++.++.+++++|+++.++...+ .+
T Consensus        94 ~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l  171 (266)
T d1p9ag_          94 LLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL  171 (266)
T ss_dssp             CCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC
T ss_pred             ccccccccccccccccc-ccceeeccccccccccccccccccc-cceeccccccccccchhcccccccccccCccccccc
Confidence            45666777777777777 7777777777777888888888885 888888888888999999999999998877654 48


Q ss_pred             CCccEEEccCCCccc
Q psy16571         82 PELRTIDIAENPIEC   96 (150)
Q Consensus        82 ~~L~~L~l~~N~~~c   96 (150)
                      ++|+.|+|++|.+.-
T Consensus       172 ~~L~~L~Ls~N~L~~  186 (266)
T d1p9ag_         172 ENLDTLLLQENSLYT  186 (266)
T ss_dssp             TTCCEEECCSSCCCC
T ss_pred             cccceeecccCCCcc
Confidence            899999999998874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.9e-11  Score=84.55  Aligned_cols=91  Identities=25%  Similarity=0.313  Sum_probs=59.8

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccC-cCcCCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS-ESMLAWP   82 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp-~~~~~~~   82 (150)
                      .+....+|+.+++++| .++.+++.+|..+++|+.|++++|. +..+++.+|.++++|+.+++++|.++.++ ..+..++
T Consensus       124 ~~~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~~N~-l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~  201 (284)
T d1ozna_         124 LFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG  201 (284)
T ss_dssp             TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             ccchhcccchhhhccc-cccccChhHhccccchhhcccccCc-ccccchhhhccccccchhhhhhccccccChhHhhhhh
Confidence            3445555666666666 6666666666666677777777764 66666666666777777777777776553 3444467


Q ss_pred             CccEEEccCCCccc
Q psy16571         83 ELRTIDIAENPIEC   96 (150)
Q Consensus        83 ~L~~L~l~~N~~~c   96 (150)
                      +++.|++++|.+.-
T Consensus       202 ~L~~L~l~~N~i~~  215 (284)
T d1ozna_         202 RLMTLYLFANNLSA  215 (284)
T ss_dssp             TCCEEECCSSCCSC
T ss_pred             hccccccccccccc
Confidence            77777777777654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.22  E-value=2.2e-11  Score=84.93  Aligned_cols=92  Identities=21%  Similarity=0.356  Sum_probs=77.1

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC-
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-   80 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~-   80 (150)
                      +.+|.++..++.|++++| .++.+++..|.++++|+.|++++|. ++.++. .|..+++|+.|+|++|+|+.++...+. 
T Consensus       188 ~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N~-L~~lp~-~l~~l~~L~~L~Ls~N~i~~i~~~~f~~  264 (305)
T d1xkua_         188 AASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNK-LVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCP  264 (305)
T ss_dssp             TGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSC-CSSCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             hhHhhccccccccccccc-cccccccccccccccceeeeccccc-cccccc-ccccccCCCEEECCCCccCccChhhccC
Confidence            456788888999999998 9999888888889999999999996 888865 577889999999999999988765543 


Q ss_pred             ------CCCccEEEccCCCccc
Q psy16571         81 ------WPELRTIDIAENPIEC   96 (150)
Q Consensus        81 ------~~~L~~L~l~~N~~~c   96 (150)
                            ..+|+.|++.+|+|.+
T Consensus       265 ~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         265 PGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             SSCCTTSCCCSEEECCSSSSCG
T ss_pred             cchhcccCCCCEEECCCCcCcc
Confidence                  5678889999999876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.4e-11  Score=77.34  Aligned_cols=68  Identities=29%  Similarity=0.388  Sum_probs=62.5

Q ss_pred             CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc
Q psy16571          2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT   72 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~   72 (150)
                      +++|.++++|+.|++++| .++.+++.+|..+++|+.|++++|+ ++.+++..|..+ .|+.|+|++|.+.
T Consensus        49 ~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          49 LRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             GGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             chhhccccccCcceeecc-ccCCcccccccccccccceeccCCC-CcccChhhhccc-cccccccCCCccc
Confidence            567999999999999999 9999999999999999999999996 999999888654 6999999999873

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.07  E-value=4.2e-11  Score=83.77  Aligned_cols=93  Identities=26%  Similarity=0.289  Sum_probs=72.2

Q ss_pred             CccccCccccceeccCC-CcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcC
Q psy16571          2 EKEVKGLSYLKRLEITG-ASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESML   79 (150)
Q Consensus         2 p~~f~~l~~L~~L~l~~-n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~   79 (150)
                      |.++.+|++|++|++++ | .+.+..|..+..+++|+.|++++|. +..+.+..+..+..|+.++++.|.+. .+|..+.
T Consensus        69 p~~l~~L~~L~~L~Ls~~N-~l~g~iP~~i~~L~~L~~L~Ls~N~-l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~  146 (313)
T d1ogqa_          69 PSSLANLPYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             ChHHhcCcccccccccccc-ccccccccccccccccchhhhcccc-ccccccccccchhhhcccccccccccccCchhhc
Confidence            56788888889999886 5 6664334467888889999998885 88877777777888888888888766 5677777


Q ss_pred             CCCCccEEEccCCCccc
Q psy16571         80 AWPELRTIDIAENPIEC   96 (150)
Q Consensus        80 ~~~~L~~L~l~~N~~~c   96 (150)
                      .++.++.+++++|.+..
T Consensus       147 ~l~~L~~l~l~~n~l~~  163 (313)
T d1ogqa_         147 SLPNLVGITFDGNRISG  163 (313)
T ss_dssp             GCTTCCEEECCSSCCEE
T ss_pred             cCcccceeecccccccc
Confidence            78888888888887753

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.04  E-value=1.1e-10  Score=81.66  Aligned_cols=88  Identities=17%  Similarity=0.115  Sum_probs=42.7

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCCCCC
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLAWPE   83 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~~~~   83 (150)
                      +..+..++.+++++| .+...++ .+..+++|+.+++++|. +++..|..+..+++|+.|+|++|.|+ .+|. ..++.+
T Consensus       217 ~~~~~~l~~l~~~~~-~l~~~~~-~~~~~~~L~~L~Ls~N~-l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~  292 (313)
T d1ogqa_         217 FGSDKNTQKIHLAKN-SLAFDLG-KVGLSKNLNGLDLRNNR-IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQR  292 (313)
T ss_dssp             CCTTSCCSEEECCSS-EECCBGG-GCCCCTTCCEEECCSSC-CEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGG
T ss_pred             ccccccccccccccc-ccccccc-ccccccccccccCccCe-ecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCC
Confidence            344455555555555 4443332 24445555555555553 54333333455555555555555555 3442 334445


Q ss_pred             ccEEEccCCCccc
Q psy16571         84 LRTIDIAENPIEC   96 (150)
Q Consensus        84 L~~L~l~~N~~~c   96 (150)
                      |+.+++.+|++-|
T Consensus       293 L~~l~l~~N~~l~  305 (313)
T d1ogqa_         293 FDVSAYANNKCLC  305 (313)
T ss_dssp             SCGGGTCSSSEEE
T ss_pred             CCHHHhCCCcccc
Confidence            5555555555444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.03  E-value=3.2e-10  Score=80.75  Aligned_cols=81  Identities=15%  Similarity=0.289  Sum_probs=51.0

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCc
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPEL   84 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L   84 (150)
                      +..+.+++.|++++| .++.+++  +..+++|+.|++++|. ++.++  .+..+++|+.|++++|.++.+++ +..+++|
T Consensus       303 ~~~~~~l~~L~ls~n-~l~~l~~--l~~l~~L~~L~L~~n~-l~~l~--~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L  375 (384)
T d2omza2         303 ISNLKNLTYLTLYFN-NISDISP--VSSLTKLQRLFFANNK-VSDVS--SLANLTNINWLSAGHNQISDLTP-LANLTRI  375 (384)
T ss_dssp             GGGCTTCSEEECCSS-CCSCCGG--GGGCTTCCEEECCSSC-CCCCG--GGGGCTTCCEEECCSSCCCBCGG-GTTCTTC
T ss_pred             cchhcccCeEECCCC-CCCCCcc--cccCCCCCEEECCCCC-CCCCh--hHcCCCCCCEEECCCCcCCCChh-hccCCCC
Confidence            444556666666666 6666543  5566667777777664 66654  25566667777777776666654 4556667


Q ss_pred             cEEEccCC
Q psy16571         85 RTIDIAEN   92 (150)
Q Consensus        85 ~~L~l~~N   92 (150)
                      +.|++++|
T Consensus       376 ~~L~L~~N  383 (384)
T d2omza2         376 TQLGLNDQ  383 (384)
T ss_dssp             SEEECCCE
T ss_pred             CEeeCCCC
Confidence            77776665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.93  E-value=1.9e-09  Score=71.98  Aligned_cols=79  Identities=28%  Similarity=0.421  Sum_probs=47.8

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCc
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPEL   84 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L   84 (150)
                      +.+..+|+.|++++| .+....+  +..+++|+.+++++|. ++.+++  +..+++|+.|++++|+++.++. +..+++|
T Consensus       147 ~~~~~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~Ls~n~-l~~l~~--l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L  219 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNK-ISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNL  219 (227)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTC
T ss_pred             hcccccccccccccc-ccccchh--hcccccceecccCCCc-cCCChh--hcCCCCCCEEECcCCcCCCCcc-cccCCCC
Confidence            445556666666666 5554432  5566666666666664 666543  4556666666666666666653 4456666


Q ss_pred             cEEEcc
Q psy16571         85 RTIDIA   90 (150)
Q Consensus        85 ~~L~l~   90 (150)
                      +.|+++
T Consensus       220 ~~L~ls  225 (227)
T d1h6ua2         220 FIVTLT  225 (227)
T ss_dssp             CEEEEE
T ss_pred             CEEEee
Confidence            666664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.92  E-value=4.4e-09  Score=68.91  Aligned_cols=84  Identities=25%  Similarity=0.402  Sum_probs=61.3

Q ss_pred             ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCc
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPEL   84 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L   84 (150)
                      |.++++|++|++++| .+..++.  +.+++.|+.++++++. +..+++  +..+++|+.+++++|.+..++ .+..++++
T Consensus        80 l~~l~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L  152 (199)
T d2omxa2          80 LKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNNQ-ITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSL  152 (199)
T ss_dssp             GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEECCSSC-CCCCGG--GTTCTTCSEEECCSSCCCCCG-GGTTCTTC
T ss_pred             ccCCccccccccccc-ccccccc--cccccccccccccccc-cccccc--cchhhhhHHhhhhhhhhcccc-cccccccc
Confidence            667788888888888 7777663  6778888888888775 665543  566778888888888777665 35567777


Q ss_pred             cEEEccCCCcc
Q psy16571         85 RTIDIAENPIE   95 (150)
Q Consensus        85 ~~L~l~~N~~~   95 (150)
                      +.|++.+|.+.
T Consensus       153 ~~L~l~~n~l~  163 (199)
T d2omxa2         153 QQLNFSSNQVT  163 (199)
T ss_dssp             SEEECCSSCCC
T ss_pred             ccccccccccc
Confidence            77777777654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.90  E-value=4.9e-09  Score=68.69  Aligned_cols=83  Identities=23%  Similarity=0.359  Sum_probs=45.9

Q ss_pred             cCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCcc
Q psy16571          6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELR   85 (150)
Q Consensus         6 ~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~   85 (150)
                      +.+++|++|++++| .++.+++  +..+++|+.+++++|. +..+++  +..++.|+.++++++.+..++. +..+++|+
T Consensus        59 ~~l~nL~~L~Ls~N-~l~~~~~--l~~l~~L~~L~l~~n~-~~~~~~--l~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~  131 (199)
T d2omxa2          59 EYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQ-IADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLN  131 (199)
T ss_dssp             GGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCS
T ss_pred             ccCCCcCcCccccc-cccCccc--ccCCcccccccccccc-cccccc--cccccccccccccccccccccc-cchhhhhH
Confidence            34555556666665 5555543  5555566666666553 554442  4455666666666555554432 34456666


Q ss_pred             EEEccCCCcc
Q psy16571         86 TIDIAENPIE   95 (150)
Q Consensus        86 ~L~l~~N~~~   95 (150)
                      .+++++|.+.
T Consensus       132 ~L~l~~n~l~  141 (199)
T d2omxa2         132 RLELSSNTIS  141 (199)
T ss_dssp             EEECCSSCCC
T ss_pred             Hhhhhhhhhc
Confidence            6666666553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.83  E-value=7.8e-12  Score=82.60  Aligned_cols=90  Identities=27%  Similarity=0.382  Sum_probs=54.1

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchh---------------------hcCCCCCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEED---------------------ALVGLPNLY   62 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~---------------------~~~~l~~L~   62 (150)
                      ++..+.+|++|++++| .++.++  .+..+++|+.|++++|. ++.++..                     .+..+++|+
T Consensus        43 sl~~L~~L~~L~Ls~n-~I~~i~--~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~  118 (198)
T d1m9la_          43 TLSTLKACKHLALSTN-NIEKIS--SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCCEEECSEE-EESCCC--CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSS
T ss_pred             HHhcccccceeECccc-CCCCcc--cccCCccccChhhcccc-ccccccccccccccccccccccccccccccccccccc
Confidence            4555666666666666 666654  25556666666666664 5554321                     122345666


Q ss_pred             eEecCCCCccccCc--CcCCCCCccEEEccCCCcccc
Q psy16571         63 HLNLKENAFTSFSE--SMLAWPELRTIDIAENPIECG   97 (150)
Q Consensus        63 ~l~l~~n~l~~lp~--~~~~~~~L~~L~l~~N~~~c~   97 (150)
                      .|++++|.++.++.  .+..+++|+.|++++|++...
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccchhccccccccccCCCccceeecCCCccccC
Confidence            77777776666543  345577788888888876543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.83  E-value=6e-09  Score=68.85  Aligned_cols=86  Identities=23%  Similarity=0.353  Sum_probs=67.9

Q ss_pred             cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCC
Q psy16571          4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE   83 (150)
Q Consensus         4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~   83 (150)
                      .+.++++|+.|++++| .+..++  .+..++.++.+++++|. +.....  +..+++|+.+++++|.+..++. +..+++
T Consensus       107 ~l~~l~~L~~L~l~~~-~~~~~~--~l~~l~~l~~l~~~~n~-l~~~~~--~~~l~~L~~l~l~~n~l~~i~~-l~~l~~  179 (210)
T d1h6ta2         107 SLKDLKKLKSLSLEHN-GISDIN--GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISDIVP-LAGLTK  179 (210)
T ss_dssp             GGTTCTTCCEEECTTS-CCCCCG--GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCCCGG-GTTCTT
T ss_pred             cccccccccccccccc-cccccc--ccccccccccccccccc-cccccc--cccccccccccccccccccccc-ccCCCC
Confidence            4677888999999998 777665  46778889999998885 776553  4567889999999998888764 667888


Q ss_pred             ccEEEccCCCccc
Q psy16571         84 LRTIDIAENPIEC   96 (150)
Q Consensus        84 L~~L~l~~N~~~c   96 (150)
                      |+.|++++|.+..
T Consensus       180 L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         180 LQNLYLSKNHISD  192 (210)
T ss_dssp             CCEEECCSSCCCB
T ss_pred             CCEEECCCCCCCC
Confidence            9999999888763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2.9e-09  Score=71.53  Aligned_cols=86  Identities=23%  Similarity=0.385  Sum_probs=69.0

Q ss_pred             cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCC-ccchhhcCCCCCCCeEecC-CCCccccCcC-cCCCCCcc
Q psy16571          9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLK-IIEEDALVGLPNLYHLNLK-ENAFTSFSES-MLAWPELR   85 (150)
Q Consensus         9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~-~~~~~~~~~l~~L~~l~l~-~n~l~~lp~~-~~~~~~L~   85 (150)
                      .++++|++++| .++.++..+|.++++|+.+++++|. +. .+++.+|..++.++.+.+. .|.+..++.. +..+++|+
T Consensus        29 ~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~-~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~  106 (242)
T d1xwdc1          29 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQND-VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  106 (242)
T ss_dssp             SCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCT-TCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCC
T ss_pred             CCCCEEECcCC-cCCccChhHhhccchhhhhhhcccc-ccceeecccccccccccccccccccccccccccccccccccc
Confidence            47889999999 9999998889999999999999996 54 4666778888888888865 4677766654 44588999


Q ss_pred             EEEccCCCccc
Q psy16571         86 TIDIAENPIEC   96 (150)
Q Consensus        86 ~L~l~~N~~~c   96 (150)
                      .+++.+|.+.-
T Consensus       107 ~l~l~~~~l~~  117 (242)
T d1xwdc1         107 YLLISNTGIKH  117 (242)
T ss_dssp             EEEEESCCCCS
T ss_pred             ccccchhhhcc
Confidence            99998887653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.81  E-value=1e-08  Score=67.76  Aligned_cols=81  Identities=26%  Similarity=0.341  Sum_probs=45.0

Q ss_pred             ccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEE
Q psy16571          8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTI   87 (150)
Q Consensus         8 l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L   87 (150)
                      +.+|++|++++| .++.+..  +..+++|+.|++++|. ++.+++  +..+++|+.|++++|.++.++. +..+++|+.+
T Consensus        45 L~~L~~L~l~~~-~i~~l~~--l~~l~~L~~L~L~~n~-i~~l~~--~~~l~~L~~L~l~~n~i~~l~~-l~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNK-LTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred             hcCccEEECcCC-CCCCchh--HhhCCCCCEEeCCCcc-ccCccc--cccCcccccccccccccccccc-cccccccccc
Confidence            445556666665 5555542  4455666666666664 555543  3455666666666666665542 4445556666


Q ss_pred             EccCCCcc
Q psy16571         88 DIAENPIE   95 (150)
Q Consensus        88 ~l~~N~~~   95 (150)
                      ++.+|.+.
T Consensus       118 ~l~~~~~~  125 (210)
T d1h6ta2         118 SLEHNGIS  125 (210)
T ss_dssp             ECTTSCCC
T ss_pred             cccccccc
Confidence            66555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.77  E-value=7.2e-12  Score=82.76  Aligned_cols=83  Identities=20%  Similarity=0.276  Sum_probs=60.6

Q ss_pred             ccceeccCCC-cCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEE
Q psy16571         10 YLKRLEITGA-SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTID   88 (150)
Q Consensus        10 ~L~~L~l~~n-~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~   88 (150)
                      .++.+++.++ +.++.++ ..+..+++|+.|++++|. |+.++.  +..+++|+.|++++|.++.+|.....++.|+.|+
T Consensus        24 ~~~~~~l~~~~~~i~~l~-~sl~~L~~L~~L~Ls~n~-I~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMD-ATLSTLKACKHLALSTNN-IEKISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELW   99 (198)
T ss_dssp             TCSCEECCBCCTTCCCCH-HHHHHTTTCCEEECSEEE-ESCCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEE
T ss_pred             ccceeeeecccCchhhhh-hHHhcccccceeECcccC-CCCccc--ccCCccccChhhcccccccccccccccccccccc
Confidence            3455666654 1244444 357889999999999996 998853  6778999999999999998875433345677788


Q ss_pred             ccCCCccc
Q psy16571         89 IAENPIEC   96 (150)
Q Consensus        89 l~~N~~~c   96 (150)
                      +++|.+..
T Consensus       100 l~~N~i~~  107 (198)
T d1m9la_         100 ISYNQIAS  107 (198)
T ss_dssp             CSEEECCC
T ss_pred             cccccccc
Confidence            87777653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.75  E-value=1.5e-08  Score=71.83  Aligned_cols=84  Identities=17%  Similarity=0.233  Sum_probs=70.4

Q ss_pred             CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccE
Q psy16571          7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRT   86 (150)
Q Consensus         7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~   86 (150)
                      .+.+|++|+++++ .++.++  .+..+++|++|++++|. ++.+++  +..+++|+.|++++|.+..++. +..+++|+.
T Consensus        42 ~l~~l~~L~l~~~-~I~~l~--gl~~L~nL~~L~Ls~N~-l~~l~~--l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~  114 (384)
T d2omza2          42 DLDQVTTLQADRL-GIKSID--GVEYLNNLTQINFSNNQ-LTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTG  114 (384)
T ss_dssp             HHTTCCEEECCSS-CCCCCT--TGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred             HhCCCCEEECCCC-CCCCcc--ccccCCCCCEEeCcCCc-CCCCcc--ccCCcccccccccccccccccc-ccccccccc
Confidence            4567899999998 898874  36778999999999996 998875  7889999999999999998764 667889999


Q ss_pred             EEccCCCcccc
Q psy16571         87 IDIAENPIECG   97 (150)
Q Consensus        87 L~l~~N~~~c~   97 (150)
                      +++.+|.+...
T Consensus       115 L~~~~~~~~~~  125 (384)
T d2omza2         115 LTLFNNQITDI  125 (384)
T ss_dssp             EECCSSCCCCC
T ss_pred             ccccccccccc
Confidence            99988877543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=9.1e-09  Score=69.00  Aligned_cols=66  Identities=15%  Similarity=0.132  Sum_probs=30.6

Q ss_pred             ccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC
Q psy16571         10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES   77 (150)
Q Consensus        10 ~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~   77 (150)
                      .+..|++++| .++.++...|.....++.+.+.+|. ++.++...|.++++|+.|++++|+++.+|..
T Consensus       154 ~l~~L~l~~n-~l~~i~~~~~~~~~l~~~~~l~~n~-l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~  219 (242)
T d1xwdc1         154 ESVILWLNKN-GIQEIHNCAFNGTQLDELNLSDNNN-LEELPNDVFHGASGPVILDISRTRIHSLPSY  219 (242)
T ss_dssp             SCEEEECCSS-CCCEECTTTTTTCCEEEEECTTCTT-CCCCCTTTTTTSCCCSEEECTTSCCCCCCSS
T ss_pred             cceeeecccc-cccccccccccchhhhccccccccc-cccccHHHhcCCCCCCEEECCCCcCCccCHH
Confidence            3444555554 5555554444322212222334442 5555555555555555555555555555443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=3.7e-09  Score=67.27  Aligned_cols=70  Identities=23%  Similarity=0.201  Sum_probs=55.2

Q ss_pred             cccCCCCCCCEEeCCCCCCCCccch--hhcCCCCCCCeEecCCCCccccCc-CcCCCCCccEEEccCCCccccc
Q psy16571         28 GAFADNLNLETLTLNKNPKLKIIEE--DALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECGC   98 (150)
Q Consensus        28 ~~~~~l~~L~~l~l~~n~~l~~~~~--~~~~~l~~L~~l~l~~n~l~~lp~-~~~~~~~L~~L~l~~N~~~c~c   98 (150)
                      ..+..++.|+.|++++|. |+.+.+  ..+..+++|+.|++++|.++.++. .......++.+++.+||+.+..
T Consensus        59 ~~~~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          59 IIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             HHHHhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCc
Confidence            455678899999999996 988764  445678999999999999998876 2233457899999999997653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.60  E-value=1.1e-07  Score=63.21  Aligned_cols=86  Identities=24%  Similarity=0.429  Sum_probs=45.1

Q ss_pred             ccCccccceeccCCCcCcccccC--------------------cccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeE
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRK--------------------GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL   64 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~--------------------~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l   64 (150)
                      |.+++.|+.++++++ ....+..                    ..+...++|+.+++++|. +....+  +..+++|+.|
T Consensus       103 l~~l~~L~~l~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~--l~~l~~L~~L  178 (227)
T d1h6ua2         103 IAGLQSIKTLDLTST-QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTL  178 (227)
T ss_dssp             GTTCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEE
T ss_pred             ccccccccccccccc-cccccchhccccchhhhhchhhhhchhhhhccccccccccccccc-cccchh--hcccccceec
Confidence            455666666666665 4443322                    113344555555555553 444332  4455666666


Q ss_pred             ecCCCCccccCcCcCCCCCccEEEccCCCcc
Q psy16571         65 NLKENAFTSFSESMLAWPELRTIDIAENPIE   95 (150)
Q Consensus        65 ~l~~n~l~~lp~~~~~~~~L~~L~l~~N~~~   95 (150)
                      ++++|.++.++. +..+++|+.|++++|++.
T Consensus       179 ~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         179 KADDNKISDISP-LASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             ECCSSCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred             ccCCCccCCChh-hcCCCCCCEEECcCCcCC
Confidence            666666555543 344556666666665543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.39  E-value=5.2e-07  Score=62.77  Aligned_cols=56  Identities=23%  Similarity=0.255  Sum_probs=35.8

Q ss_pred             CCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEEccCCCccc
Q psy16571         33 NLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIEC   96 (150)
Q Consensus        33 l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~l~~N~~~c   96 (150)
                      +++|+.|++++|. +..++.    .+++|+.|++++|+|+.+|..   +.+|+.|++++|++..
T Consensus       283 ~~~L~~L~Ls~N~-l~~lp~----~~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         283 PPSLEELNVSNNK-LIELPA----LPPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS
T ss_pred             CCCCCEEECCCCc-cCcccc----ccCCCCEEECCCCcCCccccc---cCCCCEEECcCCcCCC
Confidence            4567777777774 666653    246677777777777766642   3456777777777654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=5.2e-09  Score=66.57  Aligned_cols=65  Identities=25%  Similarity=0.256  Sum_probs=35.9

Q ss_pred             CccccceeccCCCcCcccccC--cccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccc
Q psy16571          7 GLSYLKRLEITGASNLTRVRK--GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTS   73 (150)
Q Consensus         7 ~l~~L~~L~l~~n~~l~~i~~--~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~   73 (150)
                      .++.|++|++++| .++.+.+  ..+..+++|+.|++++|. ++.++.-.+.....|+.+++++|.+..
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             hCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcCc
Confidence            4555666666666 6665542  234445666666666664 666554333334456666666666553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.29  E-value=2.3e-06  Score=59.36  Aligned_cols=76  Identities=24%  Similarity=0.309  Sum_probs=42.6

Q ss_pred             ccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEEc
Q psy16571         10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI   89 (150)
Q Consensus        10 ~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~l   89 (150)
                      +|++|++++| .++.+|..    +.+|+.|++++|. ++.++.    -.+.|+.|++++|.+..+|. ...+++|+.+++
T Consensus        59 ~L~~L~Ls~N-~l~~lp~~----~~~L~~L~l~~n~-l~~l~~----lp~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l  127 (353)
T d1jl5a_          59 HLESLVASCN-SLTELPEL----PQSLKSLLVDNNN-LKALSD----LPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDV  127 (353)
T ss_dssp             TCSEEECCSS-CCSSCCCC----CTTCCEEECCSSC-CSCCCS----CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEEC
T ss_pred             CCCEEECCCC-CCcccccc----hhhhhhhhhhhcc-cchhhh----hccccccccccccccccccc-hhhhccceeecc
Confidence            4455555554 55544321    2345555555553 444431    12357777777777777764 455777888888


Q ss_pred             cCCCccc
Q psy16571         90 AENPIEC   96 (150)
Q Consensus        90 ~~N~~~c   96 (150)
                      .+|.+..
T Consensus       128 ~~~~~~~  134 (353)
T d1jl5a_         128 DNNSLKK  134 (353)
T ss_dssp             CSSCCSC
T ss_pred             ccccccc
Confidence            7776543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=3.4e-06  Score=60.39  Aligned_cols=90  Identities=21%  Similarity=0.287  Sum_probs=62.9

Q ss_pred             ccCccccceeccCCCcCccccc----CcccCCCCCCCEEeCCCCCCCCccch----hhcC-CCCCCCeEecCCCCccc--
Q psy16571          5 VKGLSYLKRLEITGASNLTRVR----KGAFADNLNLETLTLNKNPKLKIIEE----DALV-GLPNLYHLNLKENAFTS--   73 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~----~~~~~~l~~L~~l~l~~n~~l~~~~~----~~~~-~l~~L~~l~l~~n~l~~--   73 (150)
                      +..++++++|++++| .++...    ..++...++|+.|++++|. ++....    ..+. ...+|+.|+|++|.++.  
T Consensus        23 ~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~  100 (460)
T d1z7xw1          23 LPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG  100 (460)
T ss_dssp             HHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred             HHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHhcCCCCCCEEECCCCCccccc
Confidence            345678888999998 776432    2345678899999999986 754221    1222 23579999999998864  


Q ss_pred             ---cCcCcCCCCCccEEEccCCCccc
Q psy16571         74 ---FSESMLAWPELRTIDIAENPIEC   96 (150)
Q Consensus        74 ---lp~~~~~~~~L~~L~l~~N~~~c   96 (150)
                         ++..+..+++|+.|++++|.+..
T Consensus       101 ~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1         101 CGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             HHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             cccccchhhccccccccccccccchh
Confidence               33445567899999999998764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.67  E-value=1.5e-05  Score=55.61  Aligned_cols=16  Identities=19%  Similarity=0.360  Sum_probs=8.3

Q ss_pred             CCCccEEEccCCCccc
Q psy16571         81 WPELRTIDIAENPIEC   96 (150)
Q Consensus        81 ~~~L~~L~l~~N~~~c   96 (150)
                      .+.|+.|++++|.+..
T Consensus       301 ~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         301 MPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CTTCCEEECTTSBSCT
T ss_pred             CCCCCEEECCCCcCCC
Confidence            3445555555555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.3e-05  Score=54.82  Aligned_cols=82  Identities=16%  Similarity=0.223  Sum_probs=44.9

Q ss_pred             ccccceeccCCCcCcccc-cCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCC-Cccc--cCcCcCCCCC
Q psy16571          8 LSYLKRLEITGASNLTRV-RKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN-AFTS--FSESMLAWPE   83 (150)
Q Consensus         8 l~~L~~L~l~~n~~l~~i-~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n-~l~~--lp~~~~~~~~   83 (150)
                      ..+|++|+++++ .+... ....+..+++|+.|+++++. +.......+..+++|+.|+++++ .++.  +..-...+++
T Consensus        45 ~~~L~~LdLs~~-~i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          45 PFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             CCCCCEEECCCC-ccCHHHHHHHHHhCCCcccccccccC-CCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            346677777766 54332 12345566677777777664 55444445556666777777663 4442  2111222456


Q ss_pred             ccEEEccC
Q psy16571         84 LRTIDIAE   91 (150)
Q Consensus        84 L~~L~l~~   91 (150)
                      |+.|++++
T Consensus       123 L~~L~ls~  130 (284)
T d2astb2         123 LDELNLSW  130 (284)
T ss_dssp             CCEEECCC
T ss_pred             cccccccc
Confidence            66666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=1.4e-05  Score=57.03  Aligned_cols=85  Identities=21%  Similarity=0.191  Sum_probs=45.6

Q ss_pred             cccceeccCCCcCcccccCc----ccCCCCCCCEEeCCCCCCCCcc-----chhhcCCCCCCCeEecCCCCccc-----c
Q psy16571          9 SYLKRLEITGASNLTRVRKG----AFADNLNLETLTLNKNPKLKII-----EEDALVGLPNLYHLNLKENAFTS-----F   74 (150)
Q Consensus         9 ~~L~~L~l~~n~~l~~i~~~----~~~~l~~L~~l~l~~n~~l~~~-----~~~~~~~l~~L~~l~l~~n~l~~-----l   74 (150)
                      ..|+.++++++ .++.....    .+....+|+.|++++|. ++..     ........+.|+.|+|++|.++.     +
T Consensus       312 ~~L~~l~l~~~-~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l  389 (460)
T d1z7xw1         312 CQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL  389 (460)
T ss_dssp             CCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred             ccccccccccc-chhhhhhhhcccccccccchhhhheeeec-ccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHH
Confidence            35666666666 55433221    22334467777777764 6432     11111234557777777777653     2


Q ss_pred             CcCcCCCCCccEEEccCCCcc
Q psy16571         75 SESMLAWPELRTIDIAENPIE   95 (150)
Q Consensus        75 p~~~~~~~~L~~L~l~~N~~~   95 (150)
                      ...+..+++|++|++++|++.
T Consensus       390 ~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         390 AATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHHHHHCCCCCEEECCSSSCC
T ss_pred             HHHHhcCCCCCEEECCCCcCC
Confidence            222334566777777777665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.00012  Score=49.72  Aligned_cols=84  Identities=21%  Similarity=0.208  Sum_probs=59.6

Q ss_pred             cccceeccCCCc-Cccccc-CcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCC-Cccc-cCcCcCCCCCc
Q psy16571          9 SYLKRLEITGAS-NLTRVR-KGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN-AFTS-FSESMLAWPEL   84 (150)
Q Consensus         9 ~~L~~L~l~~n~-~l~~i~-~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n-~l~~-lp~~~~~~~~L   84 (150)
                      +.|+.|+++++. .++... ...+..+++|+.|+++++..++......+..+++|+.|+++++ .++. ....+.++++|
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence            578999998751 233211 1233568899999999875466555556778899999999985 6653 23345668999


Q ss_pred             cEEEccCC
Q psy16571         85 RTIDIAEN   92 (150)
Q Consensus        85 ~~L~l~~N   92 (150)
                      +.|++.++
T Consensus       228 ~~L~l~~~  235 (284)
T d2astb2         228 KTLQVFGI  235 (284)
T ss_dssp             CEEECTTS
T ss_pred             CEEeeeCC
Confidence            99999876

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.19  E-value=7e-05  Score=52.12  Aligned_cols=86  Identities=21%  Similarity=0.262  Sum_probs=47.8

Q ss_pred             CccccceeccCCCcCcccc-----cCcccCCCCCCCEEeCCCCCCCCccc----hhhcCCCCCCCeEecCCCCccccC--
Q psy16571          7 GLSYLKRLEITGASNLTRV-----RKGAFADNLNLETLTLNKNPKLKIIE----EDALVGLPNLYHLNLKENAFTSFS--   75 (150)
Q Consensus         7 ~l~~L~~L~l~~n~~l~~i-----~~~~~~~l~~L~~l~l~~n~~l~~~~----~~~~~~l~~L~~l~l~~n~l~~lp--   75 (150)
                      ....|+.|++++| .++..     ....+...++|+.|++++|. ++...    ...+...++|+.|+|++|.++.-.  
T Consensus       184 ~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         184 SHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhhcccccccc-cccccccccchhhhhcchhhhccccccccc-ccccccccccccccccccchhhhhhcCccCchhhH
Confidence            3456677777776 65431     12234556677777777774 54321    123455667777777777765311  


Q ss_pred             ---cCc--CCCCCccEEEccCCCc
Q psy16571         76 ---ESM--LAWPELRTIDIAENPI   94 (150)
Q Consensus        76 ---~~~--~~~~~L~~L~l~~N~~   94 (150)
                         ..+  .....++.|++++|.+
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i  285 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEI  285 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             HHHHHhhhccCCCCCEEECCCCcC
Confidence               111  1134677777777764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.00  E-value=0.00042  Score=43.34  Aligned_cols=88  Identities=18%  Similarity=0.239  Sum_probs=61.6

Q ss_pred             CccccceeccCCCcCccccc----CcccCCCCCCCEEeCCCCCCCCccch----hhcCCCCCCCeEecCCCCccc-----
Q psy16571          7 GLSYLKRLEITGASNLTRVR----KGAFADNLNLETLTLNKNPKLKIIEE----DALVGLPNLYHLNLKENAFTS-----   73 (150)
Q Consensus         7 ~l~~L~~L~l~~n~~l~~i~----~~~~~~l~~L~~l~l~~n~~l~~~~~----~~~~~l~~L~~l~l~~n~l~~-----   73 (150)
                      +.+.|++|++++++.++.-.    ..++...+.|+.|++++|. +..-..    ..+...+.|+.|+|++|.+..     
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45789999999752454321    2246667889999999996 764222    234456889999999999874     


Q ss_pred             cCcCcCCCCCccEEEccCCCcc
Q psy16571         74 FSESMLAWPELRTIDIAENPIE   95 (150)
Q Consensus        74 lp~~~~~~~~L~~L~l~~N~~~   95 (150)
                      +-..+...++|+.|++.+|...
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHHhCCcCCEEECCCCcCC
Confidence            2223455788999999988654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.37  E-value=0.0011  Score=41.28  Aligned_cols=89  Identities=8%  Similarity=0.099  Sum_probs=63.0

Q ss_pred             ccCccccceeccCCCcCcccccC----cccCCCCCCCEEeCCCCCCCCccch----hhcCCCCCCCeEecCCCCccccCc
Q psy16571          5 VKGLSYLKRLEITGASNLTRVRK----GAFADNLNLETLTLNKNPKLKIIEE----DALVGLPNLYHLNLKENAFTSFSE   76 (150)
Q Consensus         5 f~~l~~L~~L~l~~n~~l~~i~~----~~~~~l~~L~~l~l~~n~~l~~~~~----~~~~~l~~L~~l~l~~n~l~~lp~   76 (150)
                      +.....|++|++++| .++.-..    ..+...+.|+.|++++|. ++....    .++...+.|+.|++++|.+..+..
T Consensus        40 L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~  117 (167)
T d1pgva_          40 ACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN  117 (167)
T ss_dssp             HTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred             HhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhh-cchHHHHHHHHHHHhCCcCCEEECCCCcCCCccH
Confidence            445578999999999 8864322    234456889999999996 876332    346677899999999987665432


Q ss_pred             --------CcCCCCCccEEEccCCCcc
Q psy16571         77 --------SMLAWPELRTIDIAENPIE   95 (150)
Q Consensus        77 --------~~~~~~~L~~L~l~~N~~~   95 (150)
                              .+...++|..|+++.+...
T Consensus       118 ~~~~~l~~~L~~n~sL~~l~l~~~~~~  144 (167)
T d1pgva_         118 QVEMDMMMAIEENESLLRVGISFASME  144 (167)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHHHHhCCCccEeeCcCCCch
Confidence                    2223678999999776544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.66  E-value=0.0063  Score=37.52  Aligned_cols=102  Identities=15%  Similarity=0.163  Sum_probs=63.9

Q ss_pred             cCccccceeccCCCcCccccc----CcccCCCCCCCEEeCCCCCCCCccch----hhcCCCCCCCeEecCCCCccc----
Q psy16571          6 KGLSYLKRLEITGASNLTRVR----KGAFADNLNLETLTLNKNPKLKIIEE----DALVGLPNLYHLNLKENAFTS----   73 (150)
Q Consensus         6 ~~l~~L~~L~l~~n~~l~~i~----~~~~~~l~~L~~l~l~~n~~l~~~~~----~~~~~l~~L~~l~l~~n~l~~----   73 (150)
                      .+.+.|++|+++++..++.-.    ..++...++|+.|++++|. ++....    ..+...+.++.++++++.+..    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            355789999998742554322    2345678899999999995 765332    234456889999999988752    


Q ss_pred             -cCcCcCCCCCccEEEcc--CCCcccccChHHHHHHHhh
Q psy16571         74 -FSESMLAWPELRTIDIA--ENPIECGCNILWLREMLVR  109 (150)
Q Consensus        74 -lp~~~~~~~~L~~L~l~--~N~~~c~c~~~~l~~~~~~  109 (150)
                       +-..+...+.++.++|.  +|.+.-+ ....+.+.+.+
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~-~~~~La~~L~~  130 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNN-VEMEIANMLEK  130 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHH-HHHHHHHHHHH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHH-HHHHHHHHHHh
Confidence             22344556788876664  4555332 22334444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.41  E-value=0.025  Score=34.68  Aligned_cols=15  Identities=0%  Similarity=-0.104  Sum_probs=7.2

Q ss_pred             CCCCCCeEecCCCCc
Q psy16571         57 GLPNLYHLNLKENAF   71 (150)
Q Consensus        57 ~l~~L~~l~l~~n~l   71 (150)
                      ..++|+.|++++|.+
T Consensus        44 ~n~~L~~L~Ls~n~l   58 (166)
T d1io0a_          44 TNTYVKKFSIVGTRS   58 (166)
T ss_dssp             TCCSCCEEECTTSCC
T ss_pred             cCCccCeeeccCCcc
Confidence            344455555555544