Psyllid ID: psy16608

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVGISVEVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIFTQFKLTSDESFHVVTHIHMKTGNKFYSFPLT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHcccccccccccEEEcccccccccccHHHHHHHHHHHHccccEEEEEEccEEEEEcccccEEEEEEEEcccccHHHHHHHHHHHHHHHccccccccccccEEEEccccccccccHHHHHHHHHHHHHHccccccccEEEEcEEEEEEccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccHHccccEEEcccccccccEEEEEcccccHHHHHHHHHHHHHHcccccccccccEEEccccEEEEHccHHHHHHHHHHHHHccccEEEEcccEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHcccccEEEEEEcEEEEEEccEEEEEccc
Coil and Loop (DISEMBL)
mdnpnehggrirsfphqrnswatLVYIPLQTNLARLYAMLKEELNSvgisvevipephlslsktlvipyHWIDTLVETLGNNLRHLNRLTIKFNsieifcneekTRSFIALGANSCKTSLTSIVQAVDKsaqefklptyyeepnfhASIAWCLQDKTATLKPLLTKLDNIFTqfkltsdesfHVVTHIHMktgnkfysfplt
Flexible Loop (DISEMBL)
mdnpnehggrirsfphqrnsWATLVYIPLQTNLARLYAMLKEELNSVGISVEVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIFTQFKLTSDESFHVVTHIHMktgnkfysfplt
Low Complexity Region (SEG)
MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVGISVEVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDktatlkplltklDNIFTQFKLTSDESFHVVTHIHMKTGNKFYSFPLT
Disordered region (IsUnstruct)
*****************RNSWATLVYIPLQTNLARLYAMLKEELNSVGISVEVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIFTQFKLTSDESFHVVTHIHMKTGNKFYS****
Disordered Region (DISOPRED)
******H*GRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNS*****EVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIFTQFKLTSDESFHVVTHIHMKTGNKFYSFPLT
Disordered Region (DISEMBL)
*********RIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVGISVEVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIFTQFKLTSDESFHVVTHIHMKTGNKFYSFPLT
Disordered Region (DISPRO)
*****EHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVGISVEVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIFTQFKLTSDESFHVVTHIHMKTGNKFYSFPLT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVGISVEVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIFTQFKLTSDESFHVVTHIHMKTGNKFYSFPLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q7ZYI9	250	Putative U6 snRNA phospho	N/A	N/A	0.985	0.796	0.383	2e-34
Q91W78	267	Putative U6 snRNA phospho	yes	N/A	0.990	0.749	0.349	1e-33
Q5I0I5	267	Putative U6 snRNA phospho	yes	N/A	0.990	0.749	0.354	2e-33
Q0II50	265	Putative U6 snRNA phospho	yes	N/A	0.980	0.747	0.357	2e-33
Q6DEF6	276	Putative U6 snRNA phospho	yes	N/A	0.975	0.713	0.364	5e-32
Q9BQ65	265	Putative U6 snRNA phospho	yes	N/A	0.950	0.724	0.360	4e-31
Q9VHB3	258	Putative U6 snRNA phospho	yes	N/A	0.975	0.763	0.333	4e-30
Q54W16	275	Putative U6 snRNA phospho	yes	N/A	0.737	0.541	0.270	8e-12
Q7SEZ0	364	Putative U6 snRNA phospho	N/A	N/A	0.980	0.543	0.269	4e-10
O13915	265	Putative U6 snRNA phospho	yes	N/A	0.980	0.747	0.248	3e-06

>sp|Q7ZYI9|USB1_XENLA Putative U6 snRNA phosphodiesterase OS=Xenopus laevis GN=usb1 PE=2 SV=1

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/206 (38%), Positives = 118/206 (57%), Gaps = 7/206 (3%)

Query: 1   MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSV----GISVEVIPE 56
           +D   +H GRIRSF H+R +WAT VYIP Q      +  L +EL SV    G+ +  + E
Sbjct: 46  LDENTKHEGRIRSFKHERGNWATYVYIPFQPQ--EEFLDLLDELVSVAAENGVLLTKMSE 103

Query: 57  PHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSC 116
            H+S S+T+V+ +HWI+  VE+L + L  + R       I+++ N+EKTR+F+ L  +  
Sbjct: 104 FHISQSQTVVLRHHWINPFVESLKDKLHCMYRFLCIAERIKVYTNQEKTRTFLGLEVSVG 163

Query: 117 KTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLK-PLLTKLDNIFTQFK 175
              L  +V  VD+S QEF L T+Y+EP+FH S+AWC+ DK   LK   L +L  +  +F+
Sbjct: 164 MEHLLEVVSEVDRSLQEFNLQTFYQEPSFHVSLAWCVGDKYEKLKGSCLLELQKVIDRFE 223

Query: 176 LTSDESFHVVTHIHMKTGNKFYSFPL 201
            +   +      I  K GNK +  PL
Sbjct: 224 DSDTLTRFNAEEIRCKAGNKTFCIPL 249

Xenopus laevis (taxid: 8355)

>sp|Q91W78|USB1_MOUSE Putative U6 snRNA phosphodiesterase OS=Mus musculus GN=Usb1 PE=2 SV=1

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 117/203 (57%), Gaps = 3/203 (1%)

Query: 2   DNPNEHGGRIRSFPHQRNSWATLVYIPLQT--NLARLYAMLKEELNSVGISVEVIPEPHL 59
           D+  +HGGRIR+FPH+R +WAT +YIP +   +   L   L          + ++ E H+
Sbjct: 64  DDSAKHGGRIRTFPHERGNWATHIYIPYEAKEDFRDLLDALLPRAQMFVPRLVLMEEFHV 123

Query: 60  SLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTS 119
           SLS+++V+ +HWI   V+ L + +    R     N ++I+ N+EKTR+FI L  +S    
Sbjct: 124 SLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQEKTRTFIGLEVSSGHAQ 183

Query: 120 LTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLK-PLLTKLDNIFTQFKLTS 178
              +V  VD++ +EF L T+Y++P+FH S+AWC+ D +  L+   L +L  I  +F+ + 
Sbjct: 184 FLDLVSEVDRAMKEFDLTTFYQDPSFHISLAWCVGDASLQLEGQCLQELQEIVDEFEDSE 243

Query: 179 DESFHVVTHIHMKTGNKFYSFPL 201
                +   +  K+GNKF+S PL
Sbjct: 244 MLLRVLANQVRCKSGNKFFSMPL 266

Mus musculus (taxid: 10090)

>sp|Q5I0I5|USB1_RAT Putative U6 snRNA phosphodiesterase OS=Rattus norvegicus GN=Usb1 PE=2 SV=1

 Score =  142 bits (357), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 3/203 (1%)

Query: 2   DNPNEHGGRIRSFPHQRNSWATLVYIPLQTN--LARLYAMLKEELNSVGISVEVIPEPHL 59
           D+   HGGRIR+FPH+R +WAT +YIP + N     L  +L          +  + E HL
Sbjct: 64  DDSARHGGRIRTFPHERGNWATHIYIPYEANEEFQDLLDVLLPRAQMFAPRLVQMEEFHL 123

Query: 60  SLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTS 119
           SLS+++V+ +HWI   V+ L + +    R     N ++I+ N+EKTR+FI L  +S    
Sbjct: 124 SLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQEKTRTFIGLEVSSGHAQ 183

Query: 120 LTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTK-LDNIFTQFKLTS 178
              +V  VD+  +EF L T+Y++P+FH S+AWC+ D    L+    + L  I  +F+ + 
Sbjct: 184 FLDMVSEVDRVMKEFDLTTFYQDPSFHVSLAWCVGDARLQLEGQCQQELQEIVDEFEDSE 243

Query: 179 DESFHVVTHIHMKTGNKFYSFPL 201
                +   +  K+GNKF+S PL
Sbjct: 244 MLLRVLAEQVRCKSGNKFFSMPL 266

Rattus norvegicus (taxid: 10116)

>sp|Q0II50|USB1_BOVIN Putative U6 snRNA phosphodiesterase OS=Bos taurus GN=USB1 PE=2 SV=1

 Score =  142 bits (357), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/207 (35%), Positives = 118/207 (57%), Gaps = 9/207 (4%)

Query: 1   MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTN---LARLYAMLKEELNSVG--ISVEVIP 55
           +D+  +HGGR+R+FPH+R +WAT VYIP +     L  L A+L      V   + +E   
Sbjct: 61  VDDSAKHGGRVRTFPHERGNWATHVYIPYEAREEFLDLLDALLCHAQTYVPRLVRMEAF- 119

Query: 56  EPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANS 115
             HLSLS+++V+ +HWI   V+ L + +   +R     + ++I+ N+EKTR+F+ L   S
Sbjct: 120 --HLSLSQSVVLRHHWILPFVQALKDRVASFHRFCFTTDQVKIYTNQEKTRTFVGLEVTS 177

Query: 116 CKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLK-PLLTKLDNIFTQF 174
                  +V  VD+  +EF L T+Y++P+FH S+AWC+ D    ++ P L +L  I  +F
Sbjct: 178 GHAHFLDLVAEVDRVMEEFDLSTFYQDPSFHISLAWCVGDARLQMEGPCLQELQGIVDEF 237

Query: 175 KLTSDESFHVVTHIHMKTGNKFYSFPL 201
           + +          I  K+GNKF+S PL
Sbjct: 238 EDSEMLLRAYAEQIRCKSGNKFFSMPL 264

Bos taurus (taxid: 9913)

>sp|Q6DEF6|USB1_DANRE Putative U6 snRNA phosphodiesterase OS=Danio rerio GN=usb1 PE=2 SV=1

 Score =  137 bits (345), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 115/206 (55%), Gaps = 9/206 (4%)

Query: 2   DNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLK--EELNSVGISVEVIPEPHL 59
           D   EHGGR+RSF H+R +WAT V+ P     A L  + K      +  I + V  E HL
Sbjct: 73  DKSEEHGGRLRSFQHERGNWATYVFFPYDPEEAFLEVLNKMMAAAEAHDIPLTVSEEFHL 132

Query: 60  SLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTS 119
           SLSKT+V+ +HWI   V+++  +L H  +       ++++ N EKTR+F+ +  ++    
Sbjct: 133 SLSKTVVLRHHWIQPFVQSIRTSLTHFQKFYCVAYKLKVYSNAEKTRTFLGMEVSTGTPH 192

Query: 120 LTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATL-KPLLTKLDNIFTQFKLTS 178
           L  + + VD++ +EF L T+YE+P+FH S+AWC+ D+T  L K  L +L  +    +   
Sbjct: 193 LLELSKIVDETMKEFNLSTFYEDPSFHISLAWCVGDQTERLKKACLLELQGLIDAHE--- 249

Query: 179 DESFHV---VTHIHMKTGNKFYSFPL 201
           D  FH       +  KTGNK + FPL
Sbjct: 250 DGPFHARLNCNELRCKTGNKVFVFPL 275

Danio rerio (taxid: 7955)

>sp|Q9BQ65|USB1_HUMAN Putative U6 snRNA phosphodiesterase OS=Homo sapiens GN=USB1 PE=1 SV=1

 Score =  134 bits (338), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 19/211 (9%)

Query: 2   DNPNEHGGRIRSFPHQRNSWATLVYIPLQTN---LARLYAMLKEELNSVG--ISVEVIPE 56
           D+  +HGGR+R+FPH+R +WAT VY+P +     L  L  +L      V   + ++V   
Sbjct: 62  DDSTKHGGRVRTFPHERGNWATHVYVPYEAKEEFLDLLDVLLPHAQTYVPRLVRMKVF-- 119

Query: 57  PHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSC 116
            HLSLS+++V+ +HWI   V+ L   +   +R     N ++I+ N+EKTR+FI L   S 
Sbjct: 120 -HLSLSQSVVLRHHWILPFVQALKARMTSFHRFFFTANQVKIYTNQEKTRTFIGLEVTSG 178

Query: 117 KTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLK-PLLTKLDNIFTQFK 175
                 +V  VD+  +EF L T+Y++P+FH S+AWC+ D    L+   L +L  I   F 
Sbjct: 179 HAQFLDLVSEVDRVMEEFNLTTFYQDPSFHLSLAWCVGDARLQLEGQCLQELQAIVDGF- 237

Query: 176 LTSDESFHVVTHIHM-----KTGNKFYSFPL 201
               E   V+  +H      K+GNKF+S PL
Sbjct: 238 ----EDAEVLLRVHTEQVRCKSGNKFFSMPL 264

Homo sapiens (taxid: 9606)

>sp|Q9VHB3|USB1_DROME Putative U6 snRNA phosphodiesterase OS=Drosophila melanogaster GN=CG16790 PE=2 SV=1

 Score =  131 bits (329), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 113/204 (55%), Gaps = 7/204 (3%)

Query: 1   MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVGISVEVIPEP--H 58
           +D+P EHGGR+RSF H+R +WAT VY+P    + +L     E +  +   +E+ P    H
Sbjct: 58  VDDPAEHGGRMRSFKHERGNWATYVYVPATACVDQLEEFQTEAIARLEPHLELQPNESLH 117

Query: 59  LSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSC-K 117
           LSLS+T+V+ YH ID    +L + L            + I+ NEE+TR+FIA   ++   
Sbjct: 118 LSLSRTVVLQYHQIDEFSRSLQSALNSSAGFAATLQGLRIYTNEERTRTFIAAPLDAAFV 177

Query: 118 TSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIFTQFKLT 177
             +T+I+Q +D+   +++L  +Y+  +FH S+ WC+ D+   L   LT+L  +       
Sbjct: 178 EKMTAILQPIDQVMLDYRLQQFYDPASFHVSLLWCVGDQETLLNEKLTELKELLDD---- 233

Query: 178 SDESFHVVTHIHMKTGNKFYSFPL 201
            D+    V  +H+K GNK +++ L
Sbjct: 234 QDKLCLAVNEVHLKCGNKDFTYSL 257

Drosophila melanogaster (taxid: 7227)

>sp|Q54W16|USB1_DICDI Putative U6 snRNA phosphodiesterase OS=Dictyostelium discoideum GN=DDB_G0279967 PE=3 SV=1

 Score = 70.5 bits (171), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 6/155 (3%)

Query: 5   NEHGGRIRSFPHQRNSWATLVYIPLQT----NLARLYAMLKEELNSVGISVEVIPEPHLS 60
           +E   + R F H   ++ T +Y  + T    ++  L   +KE  N + I  +     H+S
Sbjct: 65  DETNKKTRLFEHVEGNYPTFIYFKVPTKSRNDIKELIEQVKEIGNEINIKQDTETCFHIS 124

Query: 61  LSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFN-SIEIFCNEEKTRSFIALGAN-SCKT 118
           +S+T  I  H I+T  + L   L++   + I+ +    +F N+ ++R F+++  N S K+
Sbjct: 125 ISRTFPIREHHIETFTQELKKTLKNQRSIDIQLSKECCVFINDNQSRIFLSIPINQSFKS 184

Query: 119 SLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCL 153
           ++  +++ +D     FK P YY+ P  H SI+W L
Sbjct: 185 NILKLIERIDSCLSLFKFPKYYDNPEPHLSISWSL 219

Dictyostelium discoideum (taxid: 44689)

>sp|Q7SEZ0|USB1_NEUCR Putative U6 snRNA phosphodiesterase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=usb1 PE=3 SV=2

 Score = 64.7 bits (156), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 111/252 (44%), Gaps = 54/252 (21%)

Query: 2   DNPNEHGGRIRSFPHQRNSWATLVYI-----------------PLQTNLARLYAMLKEEL 44
           D+P+ H GR R  PH   +W + VYI                  LQT +A   A    +L
Sbjct: 103 DDPSLHQGRQRQVPHIPGNWPSHVYIDWDPSSGDRELLSSLVDKLQTRVA-AAAQRYPDL 161

Query: 45  NSVGISVEV------IPEP-HLSLSKTLVIPYHWIDTLVETLGNNLRH--LNRLTIKFN- 94
             V IS  +      + +P H+SLS  L +     D  ++ +   LR   ++   + F+ 
Sbjct: 162 EGVKISTALRDPELPVDKPLHISLSAPLTLTSKNKDAFLDDVTRALRSSGVSPFVVDFSG 221

Query: 95  SIEIFCNEEKTRSFIAL--------GANSCKTS----LTSIVQAVDKSAQEFKLPTYYEE 142
            +  + +EE TRSF+ L        G  +  +S    LT+++Q  +K+A+E+  P  Y+ 
Sbjct: 222 GVNWYRSEESTRSFLVLRVREVQNTGMTTADSSPNPRLTTLLQRCNKTAKEYGQPPLYDS 281

Query: 143 PN----FHASIAWCLQDKTATLKPLLTKL---------DNIFTQFKLTSDESFHVVTHIH 189
            +    FH +IAW     + +LK L   +         +N+  + KL +  SF V T + 
Sbjct: 282 QDMGYRFHVTIAWTHARPSESLKQLTDSIFDDCKTMYSENMSIRDKLCTGSSFRVET-VK 340

Query: 190 MKTGNKFYSFPL 201
           +K GN    F L
Sbjct: 341 VKIGNHVTRFEL 352

Putative phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as a ribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: -

>sp|O13915|USB1_SCHPO Putative U6 snRNA phosphodiesterase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=usb1 PE=3 SV=2

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 23/221 (10%)

Query: 1   MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVG------ISVEVI 54
            D+P  H GRIR   H    W    Y+ +  +  ++   ++E LNS         S   +
Sbjct: 46  FDSPEFHEGRIRGQKHIEGLWFVQTYLEVDLS-KKVKKGIREFLNSQSRFQSLLCSEHNV 104

Query: 55  PEP-HLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKF--NSIEIFCNEEKTRSFIAL 111
           P   HLS+S+   I Y   + LV        +LN  T+KF    + +  N+EKTR F+A 
Sbjct: 105 PRRLHLSISENYRINYSTKNQLVHKWEQYTNNLNYRTLKFRLGKMCLLFNDEKTRMFLAF 164

Query: 112 GANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIA-----------WCLQDKTATL 160
                  +   ++       +EF      E+   H S A           W  QD+ +  
Sbjct: 165 ECKFSDENYKDLISHASDCMKEFTNRNLREDFLLHISFASSLTNEDEYQNWVSQDRESHF 224

Query: 161 KPLLTKLDNIFTQFKLTSDESFHVVTHIHMKTGNKFYSFPL 201
              + ++ N   Q K    ESF +V  + +  G+  ++FP 
Sbjct: 225 FKTMNEIINTKIQ-KDQFSESF-IVDSLKLSIGHLIFTFPF 263

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
322801276	252	hypothetical protein SINV_07046 [Solenop	0.990	0.793	0.346	2e-34
149640758	233	PREDICTED: UPF0406 protein C16orf57-like	0.995	0.862	0.372	5e-34
332021123	253	UPF0406 protein C16orf57-like protein [A	0.990	0.790	0.366	7e-34
187607690	250	uncharacterized protein LOC100145778 [Xe	0.985	0.796	0.378	1e-33
307192126	257	UPF0406 protein C16orf57-like protein [H	0.990	0.778	0.371	2e-33
126305197	268	PREDICTED: UPF0406 protein C16orf57 homo	0.995	0.75	0.352	3e-33
345487031	258	PREDICTED: UPF0406 protein C16orf57 homo	0.990	0.775	0.376	6e-33
260798388	222	hypothetical protein BRAFLDRAFT_201261 [	0.980	0.891	0.372	6e-33
148227076	250	putative U6 snRNA phosphodiesterase [Xen	0.985	0.796	0.383	1e-32
327291127	230	PREDICTED: UPF0406 protein C16orf57 homo	0.990	0.869	0.369	1e-32

>gi|322801276|gb|EFZ21963.1| hypothetical protein SINV_07046 [Solenopsis invicta]

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 119/202 (58%), Gaps = 2/202 (0%)

Query: 1   MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVGISVEVIPEPHLS 60
           +D+P +H GR+RSF H+R +W TL+YI   T+    +  +   L+ + +   +I   H+S
Sbjct: 51  IDDPLDHNGRVRSFKHERGNWVTLIYINY-TSSDCFHTWINSVLSKLPVEGSIISNLHIS 109

Query: 61  LSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTSL 120
           LS+TLV+ +HWI++ VE++  + R  N+  ++F  I ++CNEE+TR+F+ +        L
Sbjct: 110 LSRTLVLKFHWIESFVESIKQSCRKFNKFVLQFTDIRVYCNEERTRTFLGIYCRDEDGML 169

Query: 121 TSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIFTQFKLTS-D 179
             +    D    E++LP++Y++ ++H S  WCL DK A LK +L  L +   +F   + +
Sbjct: 170 KCLTDVFDNVLAEYQLPSFYKDTSYHISFFWCLGDKRACLKEILPSLTSSLNKFLAENME 229

Query: 180 ESFHVVTHIHMKTGNKFYSFPL 201
           E++  V  I  K GNK Y+F L
Sbjct: 230 EAYMHVNDIQCKIGNKCYTFEL 251

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149640758|ref|XP_001508138.1| PREDICTED: UPF0406 protein C16orf57-like [Ornithorhynchus anatinus]

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 120/204 (58%), Gaps = 3/204 (1%)

Query: 1   MDNPNEHGGRIRSFPHQRNSWATLVYIPLQT--NLARLYAMLKEELNSVGISVEVIPEPH 58
           +D+  +HGGR+R+FPH+R +WAT VY+P +   +   L  +L     +    V  + + H
Sbjct: 29  VDDVTKHGGRVRTFPHERGNWATHVYVPYEAKEDFFELLDLLVSRAKASVPHVVTMEKFH 88

Query: 59  LSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKT 118
           LSLS+++V+ YHWI   V++L   +   +R     + ++I+ NE KTR+FI L   +  T
Sbjct: 89  LSLSQSVVLRYHWITPFVQSLKERVASFHRFFFSADRVKIYTNEGKTRTFIGLEVTAGHT 148

Query: 119 SLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLK-PLLTKLDNIFTQFKLT 177
            L  +V  VD+  +EF LPT+Y+EP+FH S+AWC+ D T  L+   + +L +    F+ +
Sbjct: 149 QLLRLVSEVDRVMEEFDLPTFYKEPSFHISLAWCVGDATGELEGQCVRELQDTVNGFEDS 208

Query: 178 SDESFHVVTHIHMKTGNKFYSFPL 201
           S         I  K+GNKF+SFPL
Sbjct: 209 SVFLRVPSEQIRCKSGNKFFSFPL 232

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332021123|gb|EGI61510.1| UPF0406 protein C16orf57-like protein [Acromyrmex echinatior]

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 2/202 (0%)

Query: 1   MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVGISVEVIPEPHLS 60
           +D+P +H GRIRSF H+R +WATL+YI    +   L+  +K  LN + +   +I   H+S
Sbjct: 52  IDDPLDHDGRIRSFKHERGNWATLIYINYIPSDC-LHTWMKSVLNKLPVEGNIISSLHIS 110

Query: 61  LSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTSL 120
           LS+TLV+  HWI++ VE +    R  N+  I+   + ++CNEE+TR+F+ +        L
Sbjct: 111 LSRTLVLKLHWIESFVEDIKLACRSFNKFIIQLTDVRVYCNEERTRTFLGIYCQDEDKML 170

Query: 121 TSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIFTQFKLTSDE 180
             + +  D    E++LP++Y++ ++H S  WCL DK A LK +L  L +   +F   + E
Sbjct: 171 KCLTEIFDNLLAEYQLPSFYKDTSYHISFFWCLGDKQACLKEILPPLTSSLNKFLAENME 230

Query: 181 SFHV-VTHIHMKTGNKFYSFPL 201
             +V V  I  K GNK Y+F L
Sbjct: 231 DAYVHVNDIQCKIGNKCYTFKL 252

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|187607690|ref|NP_001120615.1| uncharacterized protein LOC100145778 [Xenopus (Silurana) tropicalis] gi|171846494|gb|AAI61753.1| LOC100145778 protein [Xenopus (Silurana) tropicalis]

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/206 (37%), Positives = 121/206 (58%), Gaps = 7/206 (3%)

Query: 1   MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSV----GISVEVIPE 56
           +D+  +HGGRIRSF H+R +WAT VYIP Q      +  L +EL SV    G+ +  + E
Sbjct: 46  LDDRTKHGGRIRSFTHERGNWATYVYIPFQPQDE--FLDLVDELLSVAAEHGVFLTKMSE 103

Query: 57  PHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSC 116
            H+S S+T+V+ +HWI+  +E+L + L  + R     + I+++ N+EKTR+F+ L  +  
Sbjct: 104 FHISQSQTVVLRHHWINPFIESLKDKLHCMYRFLCIADRIKVYTNQEKTRTFLGLEVSVG 163

Query: 117 KTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLK-PLLTKLDNIFTQFK 175
              L  +V  VD+S +EF L T+YEEP+FH S+AWC+ DK   L+   L +L  +  +F+
Sbjct: 164 SEHLLEVVSEVDQSLKEFNLQTFYEEPSFHMSLAWCVGDKAGKLEGSCLVELQKVIDRFE 223

Query: 176 LTSDESFHVVTHIHMKTGNKFYSFPL 201
            +   +      I  K GNK +  PL
Sbjct: 224 DSDILTRFNAEEIRCKAGNKTFCIPL 249

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307192126|gb|EFN75454.1| UPF0406 protein C16orf57-like protein [Harpegnathos saltator]

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/202 (37%), Positives = 117/202 (57%), Gaps = 2/202 (0%)

Query: 1   MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVGISVEVIPEPHLS 60
           +D+P  H GRIRSF H+R +WATLVYI    +   L   L   L  + +  +VI + H+S
Sbjct: 56  IDDPLNHDGRIRSFKHERGNWATLVYINYAASDC-LRTWLNSVLKDLPVKGDVISKLHIS 114

Query: 61  LSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTSL 120
           LS+TLV+ YHWI++  E L    R  +   ++   I ++CNEEKTR+F+ +   +   +L
Sbjct: 115 LSRTLVLKYHWIESFTENLKLLCRKFSPFIVQLTDIRVYCNEEKTRTFLGIYCQNDDGTL 174

Query: 121 TSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIFTQF-KLTSD 179
             +++A+D    E++LP YY++ ++H S  WCL D+   LK +L  L +    F    S+
Sbjct: 175 KCLIEALDNLLAEYQLPLYYKDTSYHISFFWCLGDQRICLKKILPSLTHSLNVFLAENSE 234

Query: 180 ESFHVVTHIHMKTGNKFYSFPL 201
           +++  V  I  K GNK Y+F L
Sbjct: 235 DNYLNVNEIQCKIGNKCYAFDL 256

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|126305197|ref|XP_001376322.1| PREDICTED: UPF0406 protein C16orf57 homolog [Monodelphis domestica]

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 120/204 (58%), Gaps = 3/204 (1%)

Query: 1   MDNPNEHGGRIRSFPHQRNSWATLVYIPLQT--NLARLYAMLKEELNSVGISVEVIPEPH 58
           +D+  +HGGRIR+FPH+R  WAT V++P +   +   L ++L  +   V   +  + + H
Sbjct: 64  VDDIEKHGGRIRTFPHERGIWATHVWVPYEAREDFFDLLSLLMTQARRVLPRLVKMEDFH 123

Query: 59  LSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKT 118
           LSLS+++V+ YHWI   V++L  +L   +R     N ++++ N+EKTR+FI L   +   
Sbjct: 124 LSLSQSVVLRYHWISPFVQSLKKHLASFHRFLFTANQVKVYTNQEKTRTFIGLEVTAGHA 183

Query: 119 SLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKP-LLTKLDNIFTQFKLT 177
               +V  VDK  +EF L T+Y+EP+FH S+AWC+ D  + L+   + +L  I   F+ +
Sbjct: 184 QFLDLVSEVDKVMEEFDLSTFYKEPSFHISLAWCVGDGRSKLQAQAIQELQEIVDGFEDS 243

Query: 178 SDESFHVVTHIHMKTGNKFYSFPL 201
           +         +  K+GNK++SFPL
Sbjct: 244 ARLLCVGAEQVRCKSGNKYFSFPL 267

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345487031|ref|XP_001603072.2| PREDICTED: UPF0406 protein C16orf57 homolog [Nasonia vitripennis]

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 117/202 (57%), Gaps = 2/202 (0%)

Query: 1   MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVGISVEVIPEPHLS 60
           +D+P EH GRIRSF H+R +WATLVYI    +   +   +KE L+ +  +  +  E H+S
Sbjct: 57  VDDPLEHDGRIRSFKHERGNWATLVYIDYIPS-EEMQLWMKEVLDQITQTGNIFQEFHVS 115

Query: 61  LSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTSL 120
           L++TLV+ +HWID+ +E + +         ++  ++EI+ NEEKTR+FI +   S   SL
Sbjct: 116 LTRTLVLKFHWIDSFIEAVKSLTASYQSFVLELGNMEIYSNEEKTRTFIGIKIQSANDSL 175

Query: 121 TSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIFTQFKLTSDE 180
             +  A+DK   E++LP++YE+ ++H S  W L D+  TL+ LL    + FT F     E
Sbjct: 176 QRLTGALDKLLDEYQLPSFYEDASYHISFLWFLGDQRKTLEALLPTFTSSFTDFLDDHPE 235

Query: 181 SFHV-VTHIHMKTGNKFYSFPL 201
              + V  +  K GNK YS  L
Sbjct: 236 QRSMQVKKLKCKIGNKLYSLKL 257

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260798388|ref|XP_002594182.1| hypothetical protein BRAFLDRAFT_201261 [Branchiostoma floridae] gi|229279415|gb|EEN50193.1| hypothetical protein BRAFLDRAFT_201261 [Branchiostoma floridae]

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 115/204 (56%), Gaps = 6/204 (2%)

Query: 2   DNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVGISVEV--IPEPHL 59
           DNP EHGGRIRSFPH   +WAT VY+  + + A     +K  L S+   V++  + + H+
Sbjct: 20  DNPEEHGGRIRSFPHVAGNWATHVYVSFEPD-ADFTDGVKHLLGSLEADVQLQQVQDYHI 78

Query: 60  SLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTS 119
           SLS+T+ + +HWI   +++L + LRH  R    F+  +++ N+EKTRSF+ L        
Sbjct: 79  SLSRTVPLTFHWIQPFIDSLRDALRHTERFFCTFHGAKVYTNDEKTRSFLGLEVTGGHNH 138

Query: 120 LTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIF--TQFKLT 177
           L  +V  VD   +EF+L  YY+ P+FH ++ WC+ D     +    KL       Q +  
Sbjct: 139 LLQLVLGVDSCLEEFRLQKYYKNPSFHMTVGWCVGDVHEDTQQFNQKLQASLAEAQEEFP 198

Query: 178 SDESFHVVTHIHMKTGNKFYSFPL 201
           S   F +V  I  K+GN+F+SFPL
Sbjct: 199 SLGGF-LVQEIKCKSGNRFFSFPL 221

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148227076|ref|NP_001079479.1| putative U6 snRNA phosphodiesterase [Xenopus laevis] gi|82176830|sp|Q7ZYI9.1|USB1_XENLA RecName: Full=Putative U6 snRNA phosphodiesterase gi|27694652|gb|AAH43765.1| MGC52944 protein [Xenopus laevis]

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/206 (38%), Positives = 118/206 (57%), Gaps = 7/206 (3%)

Query: 1   MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSV----GISVEVIPE 56
           +D   +H GRIRSF H+R +WAT VYIP Q      +  L +EL SV    G+ +  + E
Sbjct: 46  LDENTKHEGRIRSFKHERGNWATYVYIPFQPQ--EEFLDLLDELVSVAAENGVLLTKMSE 103

Query: 57  PHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSC 116
            H+S S+T+V+ +HWI+  VE+L + L  + R       I+++ N+EKTR+F+ L  +  
Sbjct: 104 FHISQSQTVVLRHHWINPFVESLKDKLHCMYRFLCIAERIKVYTNQEKTRTFLGLEVSVG 163

Query: 117 KTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLK-PLLTKLDNIFTQFK 175
              L  +V  VD+S QEF L T+Y+EP+FH S+AWC+ DK   LK   L +L  +  +F+
Sbjct: 164 MEHLLEVVSEVDRSLQEFNLQTFYQEPSFHVSLAWCVGDKYEKLKGSCLLELQKVIDRFE 223

Query: 176 LTSDESFHVVTHIHMKTGNKFYSFPL 201
            +   +      I  K GNK +  PL
Sbjct: 224 DSDTLTRFNAEEIRCKAGNKTFCIPL 249

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327291127|ref|XP_003230273.1| PREDICTED: UPF0406 protein C16orf57 homolog, partial [Anolis carolinensis]

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/203 (36%), Positives = 120/203 (59%), Gaps = 3/203 (1%)

Query: 2   DNPNEHGGRIRSFPHQRNSWATLVYIPL--QTNLARLYAMLKEELNSVGISVEVIPEPHL 59
           D   +HGGR+R+FPH+R +WAT VY+P   + +   L   L     +   S+  +PE H+
Sbjct: 27  DESEKHGGRLRTFPHERGNWATHVYMPYVAEEDFQGLLQALLCCARTYVPSLSPLPEFHI 86

Query: 60  SLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTS 119
           SLS+ +V+ YHWI   V++L   LR ++R   + + ++++ N+ KTR+F+ L  +S  + 
Sbjct: 87  SLSQVVVLRYHWIAPFVQSLKERLRSVSRFICRADQVKVYTNQTKTRTFLGLEVSSGYSK 146

Query: 120 LTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATL-KPLLTKLDNIFTQFKLTS 178
           L+ +V  VDK  +EF L T+Y++P+FH S+AW L D +  L    L +L      F+ +S
Sbjct: 147 LSELVSEVDKVMEEFSLATFYKDPSFHLSLAWGLGDLSEALGGQRLQELQETVDGFEDSS 206

Query: 179 DESFHVVTHIHMKTGNKFYSFPL 201
                  T +  K+GNKF+SFPL
Sbjct: 207 SFLRIPGTEVRCKSGNKFFSFPL 229

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
UNIPROTKB|F1NE74	256	USB1 "Uncharacterized protein"	0.985	0.777	0.348	2.6e-31
RGD|1305215	267	Usb1 "U6 snRNA biogenesis 1" [	0.985	0.745	0.352	6.9e-31
MGI|MGI:2142454	267	Usb1 "U6 snRNA biogenesis 1" [	0.985	0.745	0.343	1.8e-30
ZFIN|ZDB-GENE-040801-197	276	usb1 "U6 snRNA biogenesis 1" [	0.980	0.717	0.341	1.3e-29
UNIPROTKB|Q9BQ65	265	USB1 "Putative U6 snRNA phosph	0.980	0.747	0.351	5.6e-29
UNIPROTKB|Q0II50	265	USB1 "Putative U6 snRNA phosph	0.990	0.754	0.346	7.1e-29
FB|FBgn0037713	258	CG16790 [Drosophila melanogast	0.975	0.763	0.313	9.4e-27
UNIPROTKB|F1RFS6	150	USB1 "Uncharacterized protein"	0.707	0.953	0.342	3.5e-20
TAIR|locus:2176162	285	AT5G51170 "AT5G51170" [Arabido	0.495	0.350	0.316	1.7e-15
DICTYBASE|DDB_G0279967	275	DDB_G0279967 "UPF0406 family p	0.737	0.541	0.270	1.4e-14

UNIPROTKB|F1NE74 USB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 71/204 (34%), Positives = 112/204 (54%)

Query:     2 DNPNEHGGRIRSFPHQRNSWATLVYIPLQTN--LARLYAMLKEELNSVGISVEVIPEPHL 59
             D+ + HGGR+R FPH+R  WAT VY+P Q       L  +L     +   SV  + E H+
Sbjct:    53 DDSSRHGGRVRCFPHERGGWATHVYLPYQAQEEFLELLELLASHARTYVPSVTAMEEFHV 112

Query:    60 SLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTS 119
             SLS+++V+ YHWI   +++L   L   +R     + ++++ N+ KTR+F+ L  ++    
Sbjct:   113 SLSQSVVLRYHWISPFMQSLKERLAAFHRFFCVADRVKVYTNQNKTRTFVGLEVSTGHFQ 172

Query:   120 LTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDXXXXXXXX-XXXXDNIFTQFKLTS 178
             L  +V  VDK  +E+ LP +Y++P+FH S+AWC+ D              +I  +F+  S
Sbjct:   173 LLELVSEVDKVMEEYDLPVFYKDPSFHISMAWCVGDLRGSLEGQCLQELQDIVDRFE-DS 231

Query:   179 DESFHVV-THIHMKTGNKFYSFPL 201
                  V    I  K+GNKF+SFPL
Sbjct:   232 ARILRVQWEQIRCKSGNKFFSFPL 255

GO:0005634 "nucleus" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0034477 "U6 snRNA 3'-end processing" evidence=IEA

RGD|1305215 Usb1 "U6 snRNA biogenesis 1" [Rattus norvegicus (taxid:10116)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 72/204 (35%), Positives = 111/204 (54%)

Query:     2 DNPNEHGGRIRSFPHQRNSWATLVYIPLQTN--LARLYAMLKEELNSVGISVEVIPEPHL 59
             D+   HGGRIR+FPH+R +WAT +YIP + N     L  +L          +  + E HL
Sbjct:    64 DDSARHGGRIRTFPHERGNWATHIYIPYEANEEFQDLLDVLLPRAQMFAPRLVQMEEFHL 123

Query:    60 SLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTS 119
             SLS+++V+ +HWI   V+ L + +    R     N ++I+ N+EKTR+FI L  +S    
Sbjct:   124 SLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQEKTRTFIGLEVSSGHAQ 183

Query:   120 LTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDXXXXXXXX-XXXXDNIFTQFKLTS 178
                +V  VD+  +EF L T+Y++P+FH S+AWC+ D               I  +F+  S
Sbjct:   184 FLDMVSEVDRVMKEFDLTTFYQDPSFHVSLAWCVGDARLQLEGQCQQELQEIVDEFE-DS 242

Query:   179 DESFHVVTH-IHMKTGNKFYSFPL 201
             +    V+   +  K+GNKF+S PL
Sbjct:   243 EMLLRVLAEQVRCKSGNKFFSMPL 266

GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISO

GO:0004518 "nuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=ISO;ISS

GO:0034477 "U6 snRNA 3'-end processing" evidence=ISO;ISS

MGI|MGI:2142454 Usb1 "U6 snRNA biogenesis 1" [Mus musculus (taxid:10090)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 70/204 (34%), Positives = 114/204 (55%)

Query:     2 DNPNEHGGRIRSFPHQRNSWATLVYIPLQT--NLARLYAMLKEELNSVGISVEVIPEPHL 59
             D+  +HGGRIR+FPH+R +WAT +YIP +   +   L   L          + ++ E H+
Sbjct:    64 DDSAKHGGRIRTFPHERGNWATHIYIPYEAKEDFRDLLDALLPRAQMFVPRLVLMEEFHV 123

Query:    60 SLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTS 119
             SLS+++V+ +HWI   V+ L + +    R     N ++I+ N+EKTR+FI L  +S    
Sbjct:   124 SLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQEKTRTFIGLEVSSGHAQ 183

Query:   120 LTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDXXXXXXXX-XXXXDNIFTQFKLTS 178
                +V  VD++ +EF L T+Y++P+FH S+AWC+ D               I  +F+  S
Sbjct:   184 FLDLVSEVDRAMKEFDLTTFYQDPSFHISLAWCVGDASLQLEGQCLQELQEIVDEFE-DS 242

Query:   179 DESFHVVTH-IHMKTGNKFYSFPL 201
             +    V+ + +  K+GNKF+S PL
Sbjct:   243 EMLLRVLANQVRCKSGNKFFSMPL 266

GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISO

GO:0004518 "nuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0034477 "U6 snRNA 3'-end processing" evidence=ISO

ZFIN|ZDB-GENE-040801-197 usb1 "U6 snRNA biogenesis 1" [Danio rerio (taxid:7955)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 70/205 (34%), Positives = 107/205 (52%)

Query:     2 DNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLK--EELNSVGISVEVIPEPHL 59
             D   EHGGR+RSF H+R +WAT V+ P     A L  + K      +  I + V  E HL
Sbjct:    73 DKSEEHGGRLRSFQHERGNWATYVFFPYDPEEAFLEVLNKMMAAAEAHDIPLTVSEEFHL 132

Query:    60 SLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTS 119
             SLSKT+V+ +HWI   V+++  +L H  +       ++++ N EKTR+F+ +  ++    
Sbjct:   133 SLSKTVVLRHHWIQPFVQSIRTSLTHFQKFYCVAYKLKVYSNAEKTRTFLGMEVSTGTPH 192

Query:   120 LTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDXXXXXXXXXXXXDNIFTQFKLTSD 179
             L  + + VD++ +EF L T+YE+P+FH S+AWC+ D              +        D
Sbjct:   193 LLELSKIVDETMKEFNLSTFYEDPSFHISLAWCVGDQTERLKKACLL--ELQGLIDAHED 250

Query:   180 ESFHV---VTHIHMKTGNKFYSFPL 201
               FH       +  KTGNK + FPL
Sbjct:   251 GPFHARLNCNELRCKTGNKVFVFPL 275

GO:0005634 "nucleus" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

UNIPROTKB|Q9BQ65 USB1 "Putative U6 snRNA phosphodiesterase" [Homo sapiens (taxid:9606)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 72/205 (35%), Positives = 110/205 (53%)

Query:     2 DNPNEHGGRIRSFPHQRNSWATLVYIPLQTN---LARLYAMLKEELNSVGISVEVIPEPH 58
             D+  +HGGR+R+FPH+R +WAT VY+P +     L  L  +L      V   V +    H
Sbjct:    62 DDSTKHGGRVRTFPHERGNWATHVYVPYEAKEEFLDLLDVLLPHAQTYVPRLVRM-KVFH 120

Query:    59 LSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKT 118
             LSLS+++V+ +HWI   V+ L   +   +R     N ++I+ N+EKTR+FI L   S   
Sbjct:   121 LSLSQSVVLRHHWILPFVQALKARMTSFHRFFFTANQVKIYTNQEKTRTFIGLEVTSGHA 180

Query:   119 SLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDXXXXXXXX-XXXXDNIFTQFKLT 177
                 +V  VD+  +EF L T+Y++P+FH S+AWC+ D               I   F+  
Sbjct:   181 QFLDLVSEVDRVMEEFNLTTFYQDPSFHLSLAWCVGDARLQLEGQCLQELQAIVDGFE-D 239

Query:   178 SDESFHVVTH-IHMKTGNKFYSFPL 201
             ++    V T  +  K+GNKF+S PL
Sbjct:   240 AEVLLRVHTEQVRCKSGNKFFSMPL 264

GO:0006397 "mRNA processing" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008380 "RNA splicing" evidence=IMP

GO:0000175 "3'-5'-exoribonuclease activity" evidence=IDA

GO:0034477 "U6 snRNA 3'-end processing" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|Q0II50 USB1 "Putative U6 snRNA phosphodiesterase" [Bos taurus (taxid:9913)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 71/205 (34%), Positives = 111/205 (54%)

Query:     1 MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTN---LARLYAMLKEELNSVGISVEVIPEP 57
             +D+  +HGGR+R+FPH+R +WAT VYIP +     L  L A+L      V   V +    
Sbjct:    61 VDDSAKHGGRVRTFPHERGNWATHVYIPYEAREEFLDLLDALLCHAQTYVPRLVRM-EAF 119

Query:    58 HLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCK 117
             HLSLS+++V+ +HWI   V+ L + +   +R     + ++I+ N+EKTR+F+ L   S  
Sbjct:   120 HLSLSQSVVLRHHWILPFVQALKDRVASFHRFCFTTDQVKIYTNQEKTRTFVGLEVTSGH 179

Query:   118 TSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDXXXXXXXX-XXXXDNIFTQFKL 176
                  +V  VD+  +EF L T+Y++P+FH S+AWC+ D               I  +F+ 
Sbjct:   180 AHFLDLVAEVDRVMEEFDLSTFYQDPSFHISLAWCVGDARLQMEGPCLQELQGIVDEFED 239

Query:   177 TSDESFHVVTHIHMKTGNKFYSFPL 201
             +          I  K+GNKF+S PL
Sbjct:   240 SEMLLRAYAEQIRCKSGNKFFSMPL 264

GO:0004518 "nuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISS

GO:0034477 "U6 snRNA 3'-end processing" evidence=ISS

GO:0008380 "RNA splicing" evidence=ISS

GO:0006397 "mRNA processing" evidence=IEA

FB|FBgn0037713 CG16790 [Drosophila melanogaster (taxid:7227)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 64/204 (31%), Positives = 107/204 (52%)

Query:     1 MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVGISVEVIPEP--H 58
             +D+P EHGGR+RSF H+R +WAT VY+P    + +L     E +  +   +E+ P    H
Sbjct:    58 VDDPAEHGGRMRSFKHERGNWATYVYVPATACVDQLEEFQTEAIARLEPHLELQPNESLH 117

Query:    59 LSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKT 118
             LSLS+T+V+ YH ID    +L + L            + I+ NEE+TR+FIA   ++   
Sbjct:   118 LSLSRTVVLQYHQIDEFSRSLQSALNSSAGFAATLQGLRIYTNEERTRTFIAAPLDAAFV 177

Query:   119 S-LTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDXXXXXXXXXXXXDNIFTQFKLT 177
               +T+I+Q +D+   +++L  +Y+  +FH S+ WC+ D              +       
Sbjct:   178 EKMTAILQPIDQVMLDYRLQQFYDPASFHVSLLWCVGDQETLLNEKLTELKELLDD---- 233

Query:   178 SDESFHVVTHIHMKTGNKFYSFPL 201
              D+    V  +H+K GNK +++ L
Sbjct:   234 QDKLCLAVNEVHLKCGNKDFTYSL 257

GO:0005515 "protein binding" evidence=IPI

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|F1RFS6 USB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 50/146 (34%), Positives = 78/146 (53%)

Query:    58 HLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCK 117
             HLSLS+++V+ +HWI   V+ L + +    R     + ++I+ N+EKTR+F+ L   S  
Sbjct:     5 HLSLSQSVVLRHHWILPFVQVLKDRVASFQRFCFTADQVKIYTNQEKTRTFVGLEVTSGH 64

Query:   118 TSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDXXXXXXXX-XXXXDNIFTQFKL 176
                  +V  VDK  +EF L T+Y++P+FH S+AWC+ D               I   F+ 
Sbjct:    65 AQFLDLVSEVDKVMEEFDLTTFYQDPSFHVSLAWCVGDARLQLEGRCLQELQEIVDAFE- 123

Query:   177 TSDESFHV-VTHIHMKTGNKFYSFPL 201
              S+    +    I  K+GNKF+S PL
Sbjct:   124 DSEMLLRMHAEQIRCKSGNKFFSMPL 149

GO:0034477 "U6 snRNA 3'-end processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2176162 AT5G51170 "AT5G51170" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
 Identities = 32/101 (31%), Positives = 57/101 (56%)

Query:    56 EPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANS 115
             E H+SL + + +  H I++++  L   L+   R  I FN  E+F N++ TRSF++L   +
Sbjct:   134 EFHISLGRNVPLRVHQINSVISMLRQKLQLQKRYLIDFNKWEVFVNDDHTRSFLSLEITT 193

Query:   116 CKTS-LTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQD 155
                S ++  + AV++  +   LP +Y++P  H S+ W L D
Sbjct:   194 SGLSEISKQIDAVNEVYKLHNLPEFYKDPRPHISLVWALGD 234

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048573 "photoperiodism, flowering" evidence=RCA

DICTYBASE|DDB_G0279967 DDB_G0279967 "UPF0406 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 42/155 (27%), Positives = 79/155 (50%)

Query:     5 NEHGGRIRSFPHQRNSWATLVYIPLQT----NLARLYAMLKEELNSVGISVEVIPEPHLS 60
             +E   + R F H   ++ T +Y  + T    ++  L   +KE  N + I  +     H+S
Sbjct:    65 DETNKKTRLFEHVEGNYPTFIYFKVPTKSRNDIKELIEQVKEIGNEINIKQDTETCFHIS 124

Query:    61 LSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNS-IEIFCNEEKTRSFIALGAN-SCKT 118
             +S+T  I  H I+T  + L   L++   + I+ +    +F N+ ++R F+++  N S K+
Sbjct:   125 ISRTFPIREHHIETFTQELKKTLKNQRSIDIQLSKECCVFINDNQSRIFLSIPINQSFKS 184

Query:   119 SLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCL 153
             ++  +++ +D     FK P YY+ P  H SI+W L
Sbjct:   185 NILKLIERIDSCLSLFKFPKYYDNPEPHLSISWSL 219

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0090305 "nucleic acid phosphodiester bond hydrolysis" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VHB3	USB1_DROME	No assigned EC number	0.3333	0.9752	0.7635	yes	N/A
Q5I0I5	USB1_RAT	No assigned EC number	0.3546	0.9900	0.7490	yes	N/A
Q6DEF6	USB1_DANRE	No assigned EC number	0.3640	0.9752	0.7137	yes	N/A
Q91W78	USB1_MOUSE	No assigned EC number	0.3497	0.9900	0.7490	yes	N/A
Q9BQ65	USB1_HUMAN	No assigned EC number	0.3601	0.9504	0.7245	yes	N/A
Q0II50	USB1_BOVIN	No assigned EC number	0.3574	0.9801	0.7471	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	202
pfam09749	238	pfam09749, HVSL, Uncharacterized conserved protein	6e-47

>gnl|CDD|220378 pfam09749, HVSL, Uncharacterized conserved protein

 Score =  153 bits (389), Expect = 6e-47
 Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 21/221 (9%)

Query: 1   MDNPNEHGGRIRSFPHQRNSWATLVYIP-------------LQTNLARLYAMLKEELNSV 47
            D+P  HGGR+RSFPH   +WAT VY+              L + L   +  L+   + +
Sbjct: 19  RDDPALHGGRVRSFPHVEGNWATHVYLEWRPSSAELELLDKLISQLNEDHTKLEATFDPL 78

Query: 48  GISVEVIPEP-HLSLSKTLVIPYHWIDTLVETLGNNLRHLN--RLTIKFNSIEIFCNEEK 104
            IS   +P P H+SLS+T+V+  H ID  V++L   LR     R  ++F+ ++++ NEEK
Sbjct: 79  LISDLGVPLPLHISLSRTVVLRTHQIDPFVDSLRQALRSAGIRRFKVQFSGLKVYSNEEK 138

Query: 105 TRSFIALGAN-SCKTSLTSIVQAVDKSAQEFKLPTYY-EEPNFHASIAWCLQDKTATLKP 162
           TR+F+ L  + S K +L  ++ A++++ +EF LP  Y ++P+FH SIAWCL D +  LK 
Sbjct: 139 TRTFLVLEVSESSKNALNRLLDAINEALREFGLPPLYDDDPSFHVSIAWCLGDPSEELKE 198

Query: 163 LLTKLD--NIFTQFKLTSDESFHVVTHIHMKTGNKFYSFPL 201
                    +    +L  D  F  V  +  K GNK +S PL
Sbjct: 199 KSLSELQEILDALEELIFDLQFP-VNEVKCKIGNKVFSIPL 238

This entry is of proteins of approximately 300 residues conserved from plants to humans. It contains two conserved motifs, HxSL and FHVSL. The function is unknown. Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
PF09749	239	HVSL: Uncharacterised conserved protein; InterPro:	100.0
KOG3102|consensus	269		100.0
COG1514	180	LigT 2'-5' RNA ligase [Translation, ribosomal stru	99.91
PRK15124	176	2'-5' RNA ligase; Provisional	99.9
TIGR02258	179	2_5_ligase 2'-5' RNA ligase. This protein family c	99.85
PHA02574	149	57B hypothetical protein; Provisional	99.73
PRK13679	168	hypothetical protein; Provisional	99.72
PF13563	153	2_5_RNA_ligase2: 2'-5' RNA ligase superfamily; PDB	99.54
PF10469	209	AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; Inte	99.53
PF02834	87	LigT_PEase: LigT like Phosphoesterase; InterPro: I	99.34
PLN00108	257	unknown protein; Provisional	98.89
TIGR03223	228	Phn_opern_protn putative phosphonate metabolism pr	97.3
PF05213	248	Corona_NS2A: Coronavirus NS2A protein; InterPro: I	97.04
PF07823	196	CPDase: Cyclic phosphodiesterase-like protein; Int	96.99
PF02834	87	LigT_PEase: LigT like Phosphoesterase; InterPro: I	96.99
KOG2814|consensus	345		95.44
PF06299	160	DUF1045: Protein of unknown function (DUF1045); In	95.2
PHA02977	201	hypothetical protein; Provisional	94.23
COG5255	239	Uncharacterized protein conserved in bacteria [Fun	90.81
PF08302	257	tRNA_lig_CPD: Fungal tRNA ligase phosphodiesterase	90.73
TIGR02258	179	2_5_ligase 2'-5' RNA ligase. This protein family c	87.3
PF10469	209	AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; Inte	86.94
COG1514	180	LigT 2'-5' RNA ligase [Translation, ribosomal stru	85.99

>PF09749 HVSL: Uncharacterised conserved protein; InterPro: IPR019146 This entry is of proteins of approximately 300 residues conserved from plants to humans

Probab=100.00  E-value=3.6e-56  Score=371.60  Aligned_cols=199  Identities=36%  Similarity=0.661  Sum_probs=178.7

Q ss_pred             CCCCCCCCCcccccCccccccceEEEEecCCCHHHHHHHHHHHHHhhcccc---------------ccCCCCeEeeeeee
Q psy16608          1 MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVGISV---------------EVIPEPHLSLSKTL   65 (202)
Q Consensus         1 ~d~p~~h~gr~R~~pH~~G~w~tfi~i~~~~~~~~~~~~l~~~~~~~~~~~---------------~~~~~lHISLs~~~   65 (202)
                      .|||++||||+|+|||++|||+|||||+|++ +++..+.|++++++++...               +.+.+||||||+++
T Consensus        20 ~d~~~~h~gR~R~~pHv~Gnw~t~vYi~~~~-~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~s~lg~~~~lHISLSr~~   98 (239)
T PF09749_consen   20 QDDPSLHGGRIRSFPHVEGNWPTHVYIEWPP-SEDQRELLEKLISKANSICPKLHSEFEPLLYSDLGSPDPLHISLSRTF   98 (239)
T ss_pred             ccCcccccCceecccccCCccceEEEEEecC-cHHHHHHHHHHHHHHHhhhhhhhhhcccccccccCCCCCeEEEeCCCc
Confidence            4899999999999999999999999999999 7778888998888887653               46789999999999


Q ss_pred             ccCcccHHHHHHHHHHhh--ccCCceEEEeCceEEEecCCCceEEEEEeecCCCcc-HHHHHHHHHHHHHhcCCCCCC-C
Q psy16608         66 VIPYHWIDTLVETLGNNL--RHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTS-LTSIVQAVDKSAQEFKLPTYY-E  141 (202)
Q Consensus        66 ~~~~~~i~~~~~~L~~~l--~~~~~F~l~~~~~~~f~n~~~~RvF~~l~v~~~~~~-L~~L~~~i~~~l~~~g~~~~~-~  141 (202)
                      .++.+||++|+++|++.+  +++++|.+.|+++.+|.|+++||+|++++|..+... |..|++.|+++|++||+|++| +
T Consensus        99 ~lr~~~id~f~~~lr~~l~~~~~~~F~v~f~~~~~~~N~e~TR~FL~l~V~~~~~~~l~~l~~~i~~~l~~~~lp~~Y~~  178 (239)
T PF09749_consen   99 PLRTHQIDPFVDSLRQALRSSNIRPFYVSFSGLDVYTNDEKTRSFLALRVSEGSNNELKRLLDRINEVLKEFGLPPFYDE  178 (239)
T ss_pred             cccHHHHHHHHHHHHHHHhhcCCceEEEEeCceEEEecCCCCeEEEEEEecccccHHHHHHHHHHHHHHHHhCCCcccCC
Confidence            999999999999999999  889999999999999999999999999999988765 999999999999999999999 9


Q ss_pred             CCCceEEEEeecCCCchhHHHH-HHHHHHhhhhcc-cCCceeecccceEEEeeCCeEEEeeC
Q psy16608        142 EPNFHASIAWCLQDKTATLKPL-LTKLDNIFTQFK-LTSDESFHVVTHIHMKTGNKFYSFPL  201 (202)
Q Consensus       142 ~~~pHiSia~~~~~~~~~l~~~-~~~l~~~~~~~~-~~~~~~~~~v~~v~~k~Gn~~~~~~l  201 (202)
                      ++.|||||||+.+++.+.+++. .+.+++.++++. ......+. |++|+|||||++|+|||
T Consensus       179 ~~~fHvSIAw~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-v~~Ik~kiGn~v~~ipL  239 (239)
T PF09749_consen  179 DPSFHVSIAWTLGDPSEELKESSLKILQEPLDELEEIENDNSFK-VNSIKCKIGNKVFSIPL  239 (239)
T ss_pred             CCCCEEEEEEECCCchHHHHHHHHHHHHHHHhhhhhccceeEEE-eeEEEEEECCEEEEecC
Confidence            9999999999999999888754 355555555443 11223899 99999999999999997

It contains two conserved motifs, HxSL and FHVSL. The function is unknown.

>KOG3102|consensus

Probab=100.00  E-value=1.1e-48  Score=312.16  Aligned_cols=201  Identities=33%  Similarity=0.588  Sum_probs=172.8

Q ss_pred             CCCCCCCCCcccccCccccccceEEEEecCCCHHHHHHHHHHHHHhhcccc-------ccCCCCeEeeeeeeccCcccHH
Q psy16608          1 MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVGISV-------EVIPEPHLSLSKTLVIPYHWID   73 (202)
Q Consensus         1 ~d~p~~h~gr~R~~pH~~G~w~tfi~i~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~lHISLs~~~~~~~~~i~   73 (202)
                      .|+|..||||+|+|||++|||+||||+++-.++...++..-+.+..+-..+       +..+.+||||+++..++.|||+
T Consensus        59 eDvptehGgRvR~FpHerGNwAthVYVP~~a~~~~~eEf~l~~va~l~PHl~l~~p~~~~~~~fHlSLsr~VvLr~HqI~  138 (269)
T KOG3102|consen   59 EDVPTEHGGRVRNFPHERGNWATHVYVPVCAPPLPKEEFVLKKVASLVPHLHLVEPDVALGREFHLSLSRNVVLRVHQIN  138 (269)
T ss_pred             ccCccccCceeccCccccCceeEEEEEeeccCCChHHHHHHHHHHhhcccceeeccchhccceEEEeeccceEEEeehhh
Confidence            389999999999999999999999999997632222222223333333332       4468899999999999999999


Q ss_pred             HHHHHHHHhhccCCceEEEeCceEEEecCCCceEEEEEeecCCC-ccHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy16608         74 TLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCK-TSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWC  152 (202)
Q Consensus        74 ~~~~~L~~~l~~~~~F~l~~~~~~~f~n~~~~RvF~~l~v~~~~-~~L~~L~~~i~~~l~~~g~~~~~~~~~pHiSia~~  152 (202)
                      +|+.+|++++.....|-++++++.+|.|+++||+|+++++..+. ..+..+++.||++|+.++++.||++|+||+||+||
T Consensus       139 ~fi~~L~~~l~s~~rf~~t~n~~~iytN~e~TRtFi~leitt~~~~~~~~~i~~vd~Vm~~~nL~~FY~DPsfHiSL~Wc  218 (269)
T KOG3102|consen  139 SFISMLRQKLQSQKRFLITFNKWEIYTNDEHTRTFISLEITTSGLSEISKQIDAVDEVMKLHNLPEFYKDPSFHISLVWC  218 (269)
T ss_pred             HHHHHHHHHHhhhhhheEeecceEEEeccccceeEEEEEechhhHHHHHHHHHHHHHHHHHcCchhhhcCCCCCceEEEE
Confidence            99999999999999999999999999999999999999997765 77888999999999999999999999999999999


Q ss_pred             cCCCchhHH-HHHHHHHHhhhhccc-CCceeecccceEEEeeCCeEEEeeCC
Q psy16608        153 LQDKTATLK-PLLTKLDNIFTQFKL-TSDESFHVVTHIHMKTGNKFYSFPLT  202 (202)
Q Consensus       153 ~~~~~~~l~-~~~~~l~~~~~~~~~-~~~~~~~~v~~v~~k~Gn~~~~~~l~  202 (202)
                      .||....|+ +.+.+|+++.|.+++ +-.+..+ ...|+||+|||.|+|+|.
T Consensus       219 vGD~rt~L~g~~l~EL~~l~dg~~~~~~~l~v~-~~~i~Ck~GNK~f~~~lk  269 (269)
T KOG3102|consen  219 VGDIRTSLKGAVLVELRKLRDGGCVQNRILTVK-FCGIECKIGNKTFKICLK  269 (269)
T ss_pred             eccHHHhhhhHHHHHHHHHHhccchhheeEEEe-eeeEEEecCCeeeeeecC
Confidence            999999998 788899999998873 2235666 778999999999999984

>COG1514 LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=1.5e-23  Score=167.91  Aligned_cols=127  Identities=13%  Similarity=0.108  Sum_probs=116.0

Q ss_pred             ceEEEEecCCCHHHHHHHHHHHHHhhcccc----ccCCCCeEeeeeeeccCcccHHHHHHHHHHhhccCCceEEEeCceE
Q psy16608         22 ATLVYIPLQTNLARLYAMLKEELNSVGISV----EVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIE   97 (202)
Q Consensus        22 ~tfi~i~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~~~~F~l~~~~~~   97 (202)
                      |.|+.|++|.   ++++.|.++.+.++...    +.++++||||.|+|+++.+.++.+.+.|.+..+.+ +|+|++.++|
T Consensus         2 RlFiAl~~p~---~i~~~i~~~~~~~~~~~~~k~v~~en~HiTL~flGev~e~~~~~l~~~l~~i~~~~-~f~i~l~g~g   77 (180)
T COG1514           2 RLFIALDPPA---EIAERLARIRARLKGARAIKWVEPENLHITLKFLGEVDEDKADELIEALARIAAPE-PFPITLDGAG   77 (180)
T ss_pred             eeEEEecCCH---HHHHHHHHHHHhcCcccccccccccCceEEEEccCCcCchHHHHHHHHHHHhhcCC-ceEEEEeeEc
Confidence            5677776655   88999999999888763    99999999999999999999999999999888777 9999999999


Q ss_pred             EEecCCCceEEEEEeecCCCccHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEeecC
Q psy16608         98 IFCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQ  154 (202)
Q Consensus        98 ~f~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~~~~~~~~~pHiSia~~~~  154 (202)
                      +|+|..++||+|+ ++.+ .+.|..|.+.|+..+.+.|++++.++|.||||||+.++
T Consensus        78 ~F~~~~~~rvi~~-~v~~-~~~L~~L~~~l~~~~~~~g~~~~~r~F~PHvTl~r~k~  132 (180)
T COG1514          78 SFPNPRRPRVIWV-GVEE-TEELRALAEELERALARLGLRPEERPFVPHVTLARVKS  132 (180)
T ss_pred             ccCCCCCCcEEEE-cCCC-cHHHHHHHHHHHHHHHhcCCCCCCCCcCCCEEEEeecc
Confidence            9999999999997 8976 67899999999999999999999999999999999876

>PRK15124 2'-5' RNA ligase; Provisional

Probab=99.90  E-value=3e-23  Score=165.75  Aligned_cols=125  Identities=10%  Similarity=0.004  Sum_probs=108.2

Q ss_pred             cceEEEEecCCCHHHHHHHHHHHHHhhccc----cccCCCCeEeeeeeeccCcccHHHHHHHHHHhhccCCceEEEeCce
Q psy16608         21 WATLVYIPLQTNLARLYAMLKEELNSVGIS----VEVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSI   96 (202)
Q Consensus        21 w~tfi~i~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~~~~F~l~~~~~   96 (202)
                      .|+|++|++|.   ++++.|.++++.+...    .+.++++||||.|+|+++.++++.+.+.+.+.  ..++|.|+++++
T Consensus         5 ~RlFiAl~~p~---~~~~~l~~~~~~~~~~~~~rwv~~~nlHiTL~FlG~v~~~~~~~l~~~l~~~--~~~pF~l~l~~~   79 (176)
T PRK15124          5 KRLFFAIDLPD---EIRQQIIHWRATHFPPEAGRPVAAANLHLTLAFLGEVSAEKQQALSQLAGRI--RQPGFTLTLDDA   79 (176)
T ss_pred             eEEEEEeCCCH---HHHHHHHHHHHHhccccCcccccccccEEEEEecCCCCHHHHHHHHHHHHhc--ccCCeEEEECcc
Confidence            57888888775   8888888888776432    28899999999999999999999888887654  468999999999


Q ss_pred             EEEecCCCceEEEEEeecCCCccHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEeecC
Q psy16608         97 EIFCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQ  154 (202)
Q Consensus        97 ~~f~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~~~~~~~~~pHiSia~~~~  154 (202)
                      |+|+   +||++|+ +++++...|..|++.++++++..|++.+.++|+||||||+...
T Consensus        80 g~Fp---~prvlwl-g~~~~~~~L~~L~~~l~~~l~~~G~~~e~r~f~PHiTLaR~~~  133 (176)
T PRK15124         80 GQWP---RSRVVWL-GMRQPPRGLLQLANMLRSQAARSGCYQSPQPFHPHITLLRDAS  133 (176)
T ss_pred             cCcC---CCCEEEE-EcCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCCEeeccCCC
Confidence            9998   4999996 8977677899999999999999999999999999999999643

>TIGR02258 2_5_ligase 2'-5' RNA ligase

Probab=99.85  E-value=5.7e-20  Score=146.45  Aligned_cols=127  Identities=15%  Similarity=0.178  Sum_probs=108.9

Q ss_pred             ceEEEEecCCCHHHHHHHHHHHHHhhccc-----cccCCCCeEeeeeeeccCcccHHHHHHHHHHhhccCCceEEEeCce
Q psy16608         22 ATLVYIPLQTNLARLYAMLKEELNSVGIS-----VEVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSI   96 (202)
Q Consensus        22 ~tfi~i~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~~~~F~l~~~~~   96 (202)
                      |+|++|.+|.   ++.+.|.++++.+...     .+.++++||||.|+|+++.++++.+.+.|++...  .+|++.++++
T Consensus         2 R~FiAl~~p~---~~~~~l~~~~~~l~~~~~~~r~~~~~~~HiTL~flg~~~~~~~~~l~~~l~~~~~--~~f~l~l~~~   76 (179)
T TIGR02258         2 RLFIAIDLPP---EIREQLSRIQRKLKSPLDGIKWVPPENLHITLKFLGEVDEEQVEELEDALAKIAE--PPFTLKLEGI   76 (179)
T ss_pred             eEEEEecCCH---HHHHHHHHHHHHhhccCCCcEECChHHCEEEEEEccCCCHHHHHHHHHHHHHhcC--CCeEEEEeee
Confidence            5666666664   7999999999987632     2888999999999999999999999999887653  5699999999


Q ss_pred             EEEecCCCceEEEEEeecCCCccHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEeecCC
Q psy16608         97 EIFCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQD  155 (202)
Q Consensus        97 ~~f~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~~~~~~~~~pHiSia~~~~~  155 (202)
                      |+|++..++|++|+ ++..+ ..|..|++.+.+.+...|++.+.++|.||||||+....
T Consensus        77 ~~F~~~~~~~vl~l-~~~~~-~~L~~L~~~l~~~~~~~g~~~~~~~f~PHiTlar~~~~  133 (179)
T TIGR02258        77 GVFGNPKRPRVLWA-GVEQS-EELTQLHADLERELAKLGFSKEERPFTPHITLARKKSG  133 (179)
T ss_pred             eeCCCCCCCeEEEE-eeCCC-HHHHHHHHHHHHHHHHcCCCCCCCCcCCCEEEEEecCC
Confidence            99999889999996 78764 58999999999999999999888899999999987644

This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles.

>PHA02574 57B hypothetical protein; Provisional

Probab=99.73  E-value=1.6e-17  Score=128.94  Aligned_cols=110  Identities=8%  Similarity=0.087  Sum_probs=88.8

Q ss_pred             ccceEEEEecCCCHHHHHHHHHHHHHhhcc-ccccCCCCeEeeeeeeccCcccHHHHHHHHHHhhccCCceEEEeCceEE
Q psy16608         20 SWATLVYIPLQTNLARLYAMLKEELNSVGI-SVEVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEI   98 (202)
Q Consensus        20 ~w~tfi~i~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~~~~F~l~~~~~~~   98 (202)
                      ..|+|++|+++.   ++++.|.++++.+.. ..|.+++||+||.|    ..++++.+..       ..++|.+.++++|+
T Consensus         8 ~~RlF~Al~~~~---~~r~~L~~lq~~l~~~r~V~~enLHlTL~F----~~~~v~~l~~-------~~~~F~l~l~glG~   73 (149)
T PHA02574          8 SQGTYVAAKFSE---ATLDALERLQRTLRIPNPVPRDKLHSTIVY----SRVYVPFIPA-------SGSTEVASSGHLEV   73 (149)
T ss_pred             cceEEEEEcCCH---HHHHHHHHHHHhccCCcccCHHHCEEEEec----CHHHhHHHhc-------cCCCeEEEeccccc
Confidence            457888888765   899999999988643 22999999999999    3445555522       55899999999999


Q ss_pred             EecCCCceEEEEEeecCCCccHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy16608         99 FCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAW  151 (202)
Q Consensus        99 f~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~~~~~~~~~pHiSia~  151 (202)
                      |++.. +|+.|+ |++  ...|..|++.+++.+++.+    +++|+|||||||
T Consensus        74 F~~~~-~rvlWl-g~~--~~~L~~L~~~l~~~l~~~~----~r~F~PHITLaR  118 (149)
T PHA02574         74 WETQD-KNALVL-VLE--SEYLQCRHKYARALGATHD----FDDYTPHITLSY  118 (149)
T ss_pred             cCCCC-CCEEEE-EeC--CHHHHHHHHHHHHHhhcCC----CCCcCCcEEEee
Confidence            97633 799997 785  6789999999999999843    558999999999

>PRK13679 hypothetical protein; Provisional

Probab=99.72  E-value=2.4e-16  Score=124.92  Aligned_cols=154  Identities=14%  Similarity=0.154  Sum_probs=112.0

Q ss_pred             EEecCCCHHHHHHHHHHHHHhhccccccCCCCeEeeeeeeccCcccHHHHHHHHHHhhccCCceEEEeCceEEEecCCCc
Q psy16608         26 YIPLQTNLARLYAMLKEELNSVGISVEVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKT  105 (202)
Q Consensus        26 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~~~~F~l~~~~~~~f~n~~~~  105 (202)
                      +|.+.+ ++++++.+.++.+.+..... .-+-||||.|+|+++.++++.+.+.+++..+...+|++++++++.|++.  +
T Consensus         4 ~iai~~-p~~~~~~l~~~~~~~~~~~~-~v~pHITL~f~g~~~~~~~~~l~~~l~~~~~~~~pf~l~l~~~~~F~~~--~   79 (168)
T PRK13679          4 GIVLFP-SKKIQDFANSYRKRYDPHYA-LIPPHITLKEPFEISDEQLDSIVEELRAIASETKPFTLHVTKVSSFAPT--N   79 (168)
T ss_pred             EEEEcC-CHHHHHHHHHHHHhhCcccc-cCCCceEEecCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccccCCCC--C
Confidence            445554 45899999999888875431 2223999999999999999999999999888889999999999999873  6


Q ss_pred             eEEEEEeecCCCccHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEeecCCCchhHHHHHHHHHHhhhhcccCCceeeccc
Q psy16608        106 RSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIFTQFKLTSDESFHVV  185 (202)
Q Consensus       106 RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~~~~~~~~~pHiSia~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~v  185 (202)
                      +++|+ ++.. .+.|..|++.+...+.   ...+.++|.||||||+....  +...++...    +.. . ...+.|. |
T Consensus        80 ~vl~l-~~~~-~~~L~~L~~~l~~~~~---~~~~~~~f~PHiTlar~~~~--~~~~~~~~~----l~~-~-~~~~~~~-v  145 (168)
T PRK13679         80 NVIYF-KVEK-TEELEELHERLHSGDF---YGEAEYAFVPHITIGQGLSD--DEHEDVLGQ----LKM-A-DVDHEET-I  145 (168)
T ss_pred             CEEEE-EccC-CHHHHHHHHHHHhccc---ccccCCCCCCeEEeeCCCCc--HHHHHHHHH----Hhc-C-CcceeEE-E
Confidence            89886 7875 5789999999987654   34556789999999976443  222223322    221 1 3335777 8


Q ss_pred             ceEEE--eeCCeEE
Q psy16608        186 THIHM--KTGNKFY  197 (202)
Q Consensus       186 ~~v~~--k~Gn~~~  197 (202)
                      ++|.+  +.||..+
T Consensus       146 ~~i~L~~~~~~~~w  159 (168)
T PRK13679        146 DRFHLLYQLENGSW  159 (168)
T ss_pred             CeEEEEEECCCCeE
Confidence            88888  2255444

>PF13563 2_5_RNA_ligase2: 2'-5' RNA ligase superfamily; PDB: 1IUH_A

Probab=99.54  E-value=2.7e-14  Score=109.99  Aligned_cols=118  Identities=19%  Similarity=0.193  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHhhccccccCCCCeEeeeeeeccCcccHHHHHHHHHHhhccCCceEEEeCceEEEecCCCceEEEEEee
Q psy16608         34 ARLYAMLKEELNSVGISVEVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGA  113 (202)
Q Consensus        34 ~~~~~~l~~~~~~~~~~~~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~~~~F~l~~~~~~~f~n~~~~RvF~~l~v  113 (202)
                      +++.+.++.+..+.........+.||||.+.+...... +.+.+.|+..++..++|.++|+++++|++  +++++|+ ++
T Consensus         3 ~~~~~~i~~lr~~~~~~~~~~~~pHITL~~~~~~~~~~-~~~~~~l~~~~~~~~~f~l~l~~~~~F~~--~~~vi~l-~~   78 (153)
T PF13563_consen    3 DELAEEIEALRRQKGDKRYPRWPPHITLAFPFDIDDSL-DELVEALARLAAGFPPFELRLDGFGSFPG--KGRVIFL-NV   78 (153)
T ss_dssp             ----------GT-TTEEE--GGG-EEEEEEEEE--GGG-HHHHHHHHHHHHHS--EEEEEEEEEEESS--SSSSEEE-EE
T ss_pred             ccccccchhhhcccCCCCCCCCCCEeEEEecCcccccH-HHHHHHHHHHHccCCCeEEEEccEEEcCC--CCCEEEE-Ec
Confidence            45555555544111111255566999999999999766 88899999998889999999999999999  4447775 67


Q ss_pred             cCCCccHHHHHHHHHHHHHhcCCCCCC-CCCCceEEEEeecCCC
Q psy16608        114 NSCKTSLTSIVQAVDKSAQEFKLPTYY-EEPNFHASIAWCLQDK  156 (202)
Q Consensus       114 ~~~~~~L~~L~~~i~~~l~~~g~~~~~-~~~~pHiSia~~~~~~  156 (202)
                      .. ...|..|++.|...+..++...+. +++.||||||+.....
T Consensus        79 ~~-~~~L~~L~~~l~~~~~~~~~~~~~~~~~~PHiTia~~~~~~  121 (153)
T PF13563_consen   79 EP-SPELEALHRALREALRPFGFKQDSYRPFRPHITIARRLSPK  121 (153)
T ss_dssp             EE--HHHHHHHHHHHHHHHHHHGGGGGGS----EEEEEEESS--
T ss_pred             CC-CHHHHHHHHHHHHHHHHcCCccccCCCcceEEEEeccCCcc
Confidence            43 578999999999999999888777 8999999999875443

>PF10469 AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; InterPro: IPR019510 This entry represents the N-terminal nuclear localisation signal-containing domain found in the cyclic AMP-dependent protein kinase A (PKA) anchor protein, AKAP7

Probab=99.53  E-value=2.6e-13  Score=110.94  Aligned_cols=161  Identities=18%  Similarity=0.155  Sum_probs=116.3

Q ss_pred             eEEEEecCCCHHHHHHHHHHHHHhhccc--------cccCCCCeEeeeeeeccCcccHHHHHHHHHHh---hcc----CC
Q psy16608         23 TLVYIPLQTNLARLYAMLKEELNSVGIS--------VEVIPEPHLSLSKTLVIPYHWIDTLVETLGNN---LRH----LN   87 (202)
Q Consensus        23 tfi~i~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~---l~~----~~   87 (202)
                      -|++|++.  .+++.+.+.++++.+...        ++.+..|||||..+.-.+.++++.-.+.|++.   +..    ..
T Consensus         3 hFl~ipl~--~~~i~~~~~~fq~~v~~~~~~~~~~~~i~~~~lHlTL~vl~L~~~~~i~~a~~~L~~~~~~i~~~~~~~~   80 (209)
T PF10469_consen    3 HFLCIPLN--SPEIQEKFKEFQNEVLSKDPGLDESAFIPPEKLHLTLGVLSLDTDEEIEKAKEALKSLKQEIKDQLQNPP   80 (209)
T ss_pred             eEEEEECC--CHHHHHHHHHHHHHHHhhcCCCCHHHcCCcccceEEEEEeeCCCHHHHHHHHHHHHHHHHHHhhhccCCC
Confidence            47777774  567888888888766532        27899999999999888887888777777665   333    38


Q ss_pred             ceEEEeCceEEEec-CCCceEEEEEeecCC--CccHHHHHHHHHHHHHhcCCCC--CCCC-CCceEEEEeecCC---Cch
Q psy16608         88 RLTIKFNSIEIFCN-EEKTRSFIALGANSC--KTSLTSIVQAVDKSAQEFKLPT--YYEE-PNFHASIAWCLQD---KTA  158 (202)
Q Consensus        88 ~F~l~~~~~~~f~n-~~~~RvF~~l~v~~~--~~~L~~L~~~i~~~l~~~g~~~--~~~~-~~pHiSia~~~~~---~~~  158 (202)
                      ++.|++.|+++|++ .+++||+|+ +|.++  ...|..+.+.|.+.+.+.|+..  +.++ +.||+||+.+...   ...
T Consensus        81 ~~~i~l~Gl~~f~~d~~~~~VLya-~v~~~~~~~~L~~l~~~l~~~f~~~Gl~~~~~~~~~~~~H~Tl~n~~~~~~~~~~  159 (209)
T PF10469_consen   81 PLKITLKGLGYFNDDPSKARVLYA-KVSEDSNSERLQELANKLRERFQEAGLLVTDDRRFSFKPHITLMNTSYRKKKKRR  159 (209)
T ss_pred             CceEEeeechhhCCCCCcceEEEE-cccccchHHHHHHHHHHHHHHHHHcCCccccccCCCcceEEEEEecccccccccc
Confidence            99999999999999 888999998 78764  3779999999999999999877  3333 7999999976541   111


Q ss_pred             hHHHHHHHHHHhhhhcccCCce-eecccceEEE
Q psy16608        159 TLKPLLTKLDNIFTQFKLTSDE-SFHVVTHIHM  190 (202)
Q Consensus       159 ~l~~~~~~l~~~~~~~~~~~~~-~~~~v~~v~~  190 (202)
                      .....  ...++++++. +..+ ... |++|.+
T Consensus       160 ~~~~~--d~~~~~~~~~-~~~fG~~~-v~~i~L  188 (209)
T PF10469_consen  160 QGNKF--DASELLEKYK-DFDFGEQP-VEEIQL  188 (209)
T ss_pred             ccCcc--ccHHHHHHcC-CCccceEE-ECEEEE
Confidence            00100  2234455554 4444 556 677764

This protein anchors PKA for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes []. This domain carries the nuclear localisation signal (NLS) KKRKK, that indicates the cellular destiny of this anchor protein []. Binding to the regulatory subunits RI and RII of PKA is mediated via the RI-RII subunit-binding domain at the C terminus.

>PF02834 LigT_PEase: LigT like Phosphoesterase; InterPro: IPR014051 This entry represents a domain found in a number of known and predicted phosphoesterases

Probab=99.34  E-value=3e-12  Score=90.32  Aligned_cols=77  Identities=16%  Similarity=0.217  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHhhcccc-------ccCCCCeEeeeeeeccCcccHHHHHHHHHHhhccCCceEEEeCceEEEecCCCc
Q psy16608         33 LARLYAMLKEELNSVGISV-------EVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKT  105 (202)
Q Consensus        33 ~~~~~~~l~~~~~~~~~~~-------~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~~~~F~l~~~~~~~f~n~~~~  105 (202)
                      +++.++.|.++.+.+....       +.++++||||.|+|+++.++++.+.+.+.+......+|+++++++++|++..++
T Consensus         4 p~~~~~~L~~l~~~l~~~~~~~~~r~~~~~~~HiTL~flg~~~~~~~~~l~~~l~~~~~~~~~f~~~~~~~~~f~s~~~~   83 (87)
T PF02834_consen    4 PEEIKEQLNQLQERLRQALPPLGIRWVRPFNPHITLAFLGEVPPDQLPELIEALANIASRFPPFTLTVDGFGLFPSRLRP   83 (87)
T ss_dssp             THHHHHHHHHHHHHHHHHCCSCTEEEGSCGGSEEEEEEEEEESHHHHHHHHHHHHHHHCCCB-EEEEEEEEEEEEEEETC
T ss_pred             CHHHHHHHHHHHHHHhhhccccCCcccCCCCCeEEEEeCCCCCHHHHHHHHHHHHhhhccCCCeEEEEeEEEEeCCCCCC
Confidence            4578888888888887322       789999999999999999999999999999888899999999999999999999


Q ss_pred             eEEE
Q psy16608        106 RSFI  109 (202)
Q Consensus       106 RvF~  109 (202)
                      |++|
T Consensus        84 rvi~   87 (87)
T PF02834_consen   84 RVIW   87 (87)
T ss_dssp             EEEE
T ss_pred             CCcC
Confidence            9988

These include bacterial and archaeal 2',5' RNA ligases, and a family of predicted phosphoesterases known as the YjcG family. The 2',5' RNA ligases perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA []. The physiological substrate(s) in prokaryotes may include small 2',5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. This domain contains a conserved HXTX motif which is thought to be important for catalytic activity, as it is in the related enzyme cyclic nucleotide phosphodiesterase (CPDase) []. In 2',5' RNA ligase this domain is duplicated, with the two conserved motifs forming the proposed active site, which is analogous to that of CPDase [].; PDB: 1VGJ_A 1VDX_A 2FYH_A 2D4G_A.

>PLN00108 unknown protein; Provisional

Probab=98.89  E-value=4.2e-08  Score=82.31  Aligned_cols=170  Identities=15%  Similarity=0.138  Sum_probs=114.7

Q ss_pred             cceEEEEecCCCHHHHHHHHHHHHHhhcc--------------------c-cccCCCCeEeeeeeeccCcccHHHHHHHH
Q psy16608         21 WATLVYIPLQTNLARLYAMLKEELNSVGI--------------------S-VEVIPEPHLSLSKTLVIPYHWIDTLVETL   79 (202)
Q Consensus        21 w~tfi~i~~~~~~~~~~~~l~~~~~~~~~--------------------~-~~~~~~lHISLs~~~~~~~~~i~~~~~~L   79 (202)
                      |.=||.|++.. ..++.+.+.++.+.+-.                    . +..|..|||||.-+.-...++++.-.+.|
T Consensus        36 ~THFlavPL~~-~p~i~~~~~~Fk~~Vl~~~~~~~~~f~~~l~~~gid~siF~~p~~LHLTLgmL~L~~~eev~kA~~~L  114 (257)
T PLN00108         36 FTHFVSLPLAI-YPDLKKNIEAFQNSVLGNNDKDPLKFQSTLAEMGIEKSIFVSPKTFHLTVVMLKLENNESVVKAQNIL  114 (257)
T ss_pred             CCeEEEEEcCC-CHHHHHHHHHHHHHHHhccccccccccccccccCCCHHHcCCCCceEEEEEEEEcCCHHHHHHHHHHH
Confidence            77788888842 34777777776654332                    1 18889999999988877677777766666


Q ss_pred             HHh---hcc---CCceEEEeCceEEEecC-CCceEEEEEeecCCC--ccHHHHHHHHHHHHHhcCCCC-CC-CCCCceEE
Q psy16608         80 GNN---LRH---LNRLTIKFNSIEIFCNE-EKTRSFIALGANSCK--TSLTSIVQAVDKSAQEFKLPT-YY-EEPNFHAS  148 (202)
Q Consensus        80 ~~~---l~~---~~~F~l~~~~~~~f~n~-~~~RvF~~l~v~~~~--~~L~~L~~~i~~~l~~~g~~~-~~-~~~~pHiS  148 (202)
                      ++.   +..   -+|+.|.+.|+++|..+ .++||++| +|++..  +.|..+.+.|-+...+.|+-. ++ ++..+|+|
T Consensus       115 ~s~~~~i~~~l~~~pl~I~lkGL~~Mnddps~~~VLYA-~Ve~~~~~~rLq~~ad~i~~~F~~aGL~~~d~~~~vKLH~T  193 (257)
T PLN00108        115 KSICSNVRQALKDRPVFIRLRGLDCMNGSLDKTRVLYA-PVEEVGHEGRLLNACHVIIDAFENAGFAGKDAKSRLKLHAT  193 (257)
T ss_pred             HHHHHHHHHhhCCCCeEEEEEeehhcCCCcccceEEEE-eccccCchhHHHHHHHHHHHHHHHcCCcccccCcceeeEeE
Confidence            544   322   38999999999999754 55999998 897532  568888888888888899864 43 57999999


Q ss_pred             EEeecCCCchhHHHHHHHHHHhhhhcccCCce-eecccceEEEeeCC
Q psy16608        149 IAWCLQDKTATLKPLLTKLDNIFTQFKLTSDE-SFHVVTHIHMKTGN  194 (202)
Q Consensus       149 ia~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~v~~v~~k~Gn  194 (202)
                      |.-+.-.....-+...=+=.+++++|. +.++ .+. |++|+|-.-.
T Consensus       194 lmNt~~rk~k~~k~~sFDA~~Il~~f~-d~~FG~~~-i~~vhls~r~  238 (257)
T PLN00108        194 LMNASYRKDKSKKMDTFDAREIHKEFE-NKDWGTYL-IREAHISQRY  238 (257)
T ss_pred             EechhhhhcccCccccccHHHHHHhcc-CcccceEE-ecEEEEEeec
Confidence            994431111100000001124566665 5566 777 8888876644

>TIGR03223 Phn_opern_protn putative phosphonate metabolism protein

Probab=97.30  E-value=0.004  Score=51.70  Aligned_cols=92  Identities=16%  Similarity=0.192  Sum_probs=65.0

Q ss_pred             CCeEeeeeeeccCccc-HHHHHHHHHHhhccCCceEEEeCceEEEecCCCceEEEEEeecCCCccHHHHHHHHHHHHHhc
Q psy16608         56 EPHLSLSKTLVIPYHW-IDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEF  134 (202)
Q Consensus        56 ~lHISLs~~~~~~~~~-i~~~~~~L~~~l~~~~~F~l~~~~~~~f~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~~l~~~  134 (202)
                      .+|+||+-++.+.... .+.+.+.++...++..||.+.-=.+.-..      -|+++........|..|...+-+.+..|
T Consensus        57 GfHaTLKaPFrLa~g~~~a~L~~al~~fA~~~~pf~i~~L~l~~Lg------~FlAL~P~~~~~~L~~LAa~~V~~~d~f  130 (228)
T TIGR03223        57 GFHATLKAPFRLAPGVTEAELLAAVAAFAATRAPFALPPLRVALLG------GFLALRPAAPCPALQALAAACVRELDPF  130 (228)
T ss_pred             ccceeecCCcccCCCCCHHHHHHHHHHHHhcCCCccCCcceeeeeC------CEEEEeeCCCCHHHHHHHHHHHHhhhhc
Confidence            5999999999999874 89999999999999999987611111111      1455544455577888887776665554


Q ss_pred             ----------------------------CCCCCCCCCCceEEEEeec
Q psy16608        135 ----------------------------KLPTYYEEPNFHASIAWCL  153 (202)
Q Consensus       135 ----------------------------g~~~~~~~~~pHiSia~~~  153 (202)
                                                  |.|.=-+.|+|||||-=.+
T Consensus       131 RAPls~aelaRRr~~~Ls~~Q~~~L~~WGYPYV~deFrFHmTLTg~l  177 (228)
T TIGR03223       131 RAPLTEAELARRRPDQLTPRQRALLERWGYPYVLEEFRFHMTLTGRL  177 (228)
T ss_pred             cCCCCHHHHhhcCccCCCHHHHHHHHHcCCCceecceEEEEEecCCC
Confidence                                        4454456799999998444

This family of proteins is observed in the vicinity of other caharacterized genes involved in the catabolism of phosphonates via the3 C-P lyase system (GenProp0232), its function is unknown. These proteins are members of the somewhat broader pfam06299 model "Protein of unknown function (DUF1045)" which contains proteins found in a different genomic context as well.

>PF05213 Corona_NS2A: Coronavirus NS2A protein; InterPro: IPR007878 This entry is represented by Coronavirus non-structural protein 2A (32kDa); it is a family of uncharacterised viral proteins

Probab=97.04  E-value=0.012  Score=48.30  Aligned_cols=117  Identities=14%  Similarity=0.035  Sum_probs=79.5

Q ss_pred             EEecCCCH-HHHHHHHHHHHHhhccccccC---CCCeEeeeeeeccCcccHHHHHHHHHHhhccC--CceEEEeCceEEE
Q psy16608         26 YIPLQTNL-ARLYAMLKEELNSVGISVEVI---PEPHLSLSKTLVIPYHWIDTLVETLGNNLRHL--NRLTIKFNSIEIF   99 (202)
Q Consensus        26 ~i~~~~~~-~~~~~~l~~~~~~~~~~~~~~---~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~~--~~F~l~~~~~~~f   99 (202)
                      ||..|... +.+...-.+++.++-+.++..   ..-||||.-+ .+.+++|......|++.+...  .-..+++++.-..
T Consensus         9 Fin~Pl~~f~~f~~~~~~LQ~~~~~eG~d~k~QkaPHlSl~mL-~Isd~~i~~V~~~iq~ViddM~~~~~~it~tnp~ML   87 (248)
T PF05213_consen    9 FINFPLVQFEGFMLNFKDLQFQLLEEGVDCKLQKAPHLSLGML-DISDEDIPDVETAIQKVIDDMVWFEGDITFTNPHML   87 (248)
T ss_pred             eeeccchhhhhHHHHHHHHHHHHHHcCCCccccccCeeEEEEE-EcChhhhhhHHHHHHHHHHHhhcccceEEecCceee
Confidence            56666622 333334444554444444222   4569999865 577788888887887777663  2347777776666


Q ss_pred             ecCCCceEEEEEeecCCCccHHHHHHHHHHHHHhcCCCCCC-CCCCceEEEEeec
Q psy16608        100 CNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYY-EEPNFHASIAWCL  153 (202)
Q Consensus       100 ~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~~~~~-~~~~pHiSia~~~  153 (202)
                      +     |. +++.|++    +..|+..|-.++.+-|.--.. |.+.||+|||..+
T Consensus        88 g-----~~-yV~nV~G----v~slh~ki~n~~~~kgit~gQSRmwIPHiTia~~~  132 (248)
T PF05213_consen   88 G-----RC-YVANVKG----VLSLHDKIVNVFRKKGITFGQSRMWIPHITIAQLN  132 (248)
T ss_pred             c-----cE-EEEeccc----HHHHHHHHHHHHHHhCcCcCcccccccceehhhhh
Confidence            3     44 5568865    889999999999998876544 6799999999864

Members have a phosphoesterase module (2H) [] and are predicted to be involved in RNA modification. The viral group of 2H phosphoesterases contains proteins from two unrelated virus types: the type C rotaviruses (VP3 protein, IPR011181 from INTERPRO) that are double stranded multipartite RNA viruses and the coronaviruses (NS2 protein, this group) that are positive strand RNA viruses. Given that these viruses have vertebrate hosts, it is likely that the 2H phosphoesterase domain was derived from the host by one of virus groups followed by rapid sequence divergence []. Subsequently, it may have been exchanged between the viral families. Although the direction of the exchange is not clear, it is possible that a double stranded replicative form of a subgenomic RNA transcript of the coronavirus NS2 was stabilised by a rotavirus and incorporated into its multiple double stranded RNA genome []. These proteins can be utilised as novel drug targets because of their predicted RNA modification role.

>PF07823 CPDase: Cyclic phosphodiesterase-like protein; InterPro: IPR012386 2',3' Cyclic nucleotide phosphodiesterases (CPDases) are enzymes that catalyse at least two distinct steps in the splicing of tRNA introns in eukaryotes

Probab=96.99  E-value=0.0086  Score=48.64  Aligned_cols=114  Identities=19%  Similarity=0.183  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHhhcccc-c--cCCCCeEeeeeeeccCcccHHHHHHHHHHhhccCCce-----EEEeCceEEEecCCCce
Q psy16608         35 RLYAMLKEELNSVGISV-E--VIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRL-----TIKFNSIEIFCNEEKTR  106 (202)
Q Consensus        35 ~~~~~l~~~~~~~~~~~-~--~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~~~~F-----~l~~~~~~~f~n~~~~R  106 (202)
                      ...+.|..++..++... +  ..=.-||||.-...+.  ..+.+.+.|+..+...+++     .+.|+++.. +..---+
T Consensus        14 ~~~~~L~~lI~~L~~~~~~~~p~F~PHiTL~s~i~~~--~~~~~~~~L~~~~~~~~~~~~~~~~v~~~~v~~-g~~yfq~   90 (196)
T PF07823_consen   14 PLYERLKTLISSLASLFPGSPPPFEPHITLTSGISLD--SSDDVQKVLDSAAAALKPLPKNHFTVRFDKVAS-GDKYFQC   90 (196)
T ss_dssp             TTHHHHHHHHHHHHHHST---------EEEEEEEEE----HHHHHHHHHHHHHH-B-E-----EEEEEEEEE-EEETTEE
T ss_pred             cHHHHHHHHHHHHHHHCCCCCCCcCCeEEEeCCCccC--CHHHHHHHHHHHHHhccCcccceeEEEeeeEee-CCeEEEE
Confidence            35566777777776655 2  3345799999866664  4455555566565566777     899987743 2223335


Q ss_pred             EEEEEeecCCCccHHHHHHHHHHHHHhcC------CCCCCCCCCceEEEEeecC
Q psy16608        107 SFIALGANSCKTSLTSIVQAVDKSAQEFK------LPTYYEEPNFHASIAWCLQ  154 (202)
Q Consensus       107 vF~~l~v~~~~~~L~~L~~~i~~~l~~~g------~~~~~~~~~pHiSia~~~~  154 (202)
                      +++  .|.. ...|..|.+.+.+++....      ...-..+|.|||||.+..-
T Consensus        91 vyl--~v~~-t~~L~~l~~~~r~~~~~~~~~~~~~~~~~~~~y~PHlSLlY~d~  141 (196)
T PF07823_consen   91 VYL--EVEK-TPELMSLAQIARELFVEGPPDEVKAAEWPREPYMPHLSLLYGDL  141 (196)
T ss_dssp             EEE--EE----HHHHHHHCHHHHCT----------T----S----EEEEE----
T ss_pred             EEE--EecC-ChhHHHHHHHHHHHhhhccccccccccccCCCCCCeEEEEEcCC
Confidence            554  3655 4678888888777664321      1223357999999999643

The active site is characterised by two conserved histidine residues []. The enzyme has six cysteine residues, four of which are involved in forming two intra-molecular disulphide bridges. One of these bridges is involved in the catalytic activity of the enzyme as it opens when CPDase is semi-reduced []. Proteins in this entryand belong to 3.1.4.37 from EC and catalyse the reaction Nucleoside 2',3'-cyclic phosphate + H2O = nucleoside 2'-phosphate. ; GO: 0004112 cyclic-nucleotide phosphodiesterase activity; PDB: 1JH7_A 1JH6_B 1FSI_B.

>PF02834 LigT_PEase: LigT like Phosphoesterase; InterPro: IPR014051 This entry represents a domain found in a number of known and predicted phosphoesterases

Probab=96.99  E-value=0.0011  Score=46.31  Aligned_cols=68  Identities=10%  Similarity=0.106  Sum_probs=44.6

Q ss_pred             ccHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEeecCCCchhHHHHHHHHHHhhhhccc-CCceeecccceEEEe
Q psy16608        118 TSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIFTQFKL-TSDESFHVVTHIHMK  191 (202)
Q Consensus       118 ~~L~~L~~~i~~~l~~~g~~~~~~~~~pHiSia~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~~~~~v~~v~~k  191 (202)
                      +.|..+.+.+.+.+...|+... +++.|||||++. |+..+   ..+.+|.+.++.... ...+.+. |+++.+-
T Consensus         9 ~~L~~l~~~l~~~~~~~~~r~~-~~~~~HiTL~fl-g~~~~---~~~~~l~~~l~~~~~~~~~f~~~-~~~~~~f   77 (87)
T PF02834_consen    9 EQLNQLQERLRQALPPLGIRWV-RPFNPHITLAFL-GEVPP---DQLPELIEALANIASRFPPFTLT-VDGFGLF   77 (87)
T ss_dssp             HHHHHHHHHHHHHCCSCTEEEG-SCGGSEEEEEEE-EEESH---HHHHHHHHHHHHHHCCCB-EEEE-EEEEEEE
T ss_pred             HHHHHHHHHHhhhccccCCccc-CCCCCeEEEEeC-CCCCH---HHHHHHHHHHHhhhccCCCeEEE-EeEEEEe
Confidence            5788899999999889999888 899999999986 44332   223333333433321 1245666 7676654

These include bacterial and archaeal 2',5' RNA ligases, and a family of predicted phosphoesterases known as the YjcG family. The 2',5' RNA ligases perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA []. The physiological substrate(s) in prokaryotes may include small 2',5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. This domain contains a conserved HXTX motif which is thought to be important for catalytic activity, as it is in the related enzyme cyclic nucleotide phosphodiesterase (CPDase) []. In 2',5' RNA ligase this domain is duplicated, with the two conserved motifs forming the proposed active site, which is analogous to that of CPDase [].; PDB: 1VGJ_A 1VDX_A 2FYH_A 2D4G_A.

>KOG2814|consensus

Probab=95.44  E-value=0.13  Score=44.86  Aligned_cols=125  Identities=10%  Similarity=0.066  Sum_probs=83.1

Q ss_pred             EEEecCCCHHHHHHHHHHHHH--hh----ccc------cccCCCCeEeeeeeeccCcccHHHHHHHHHHhhc------cC
Q psy16608         25 VYIPLQTNLARLYAMLKEELN--SV----GIS------VEVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLR------HL   86 (202)
Q Consensus        25 i~i~~~~~~~~~~~~l~~~~~--~~----~~~------~~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~------~~   86 (202)
                      .|++++.+.-++++.+..+.+  -+    -..      +..|.-+|+|+.+.--+....+....+.|+..-.      .-
T Consensus       134 hflal~lne~eVqe~f~~fke~~~~~esl~~~g~~~s~F~~p~~~HLTvgm~~L~~dd~vq~a~e~les~~~e~~~~~~~  213 (345)
T KOG2814|consen  134 HFLALPLNEHEVQEGFLAFKELKPFIESLLDGGIDKSLFQGPGTFHLTVGMLKLLNDDDVQKALEILESTFQEIRIDVGE  213 (345)
T ss_pred             hhhhhhcchHHHHHHHHHHHhhhhhHHHhhccchhhccccCCceeeEEEEEEEecChHHHHHHHHHHHHHHHHHHhccCC
Confidence            455555534556665555541  11    111      1788899999999999999999999888877332      24


Q ss_pred             CceEEEeCceEEEecC-CCceEEEEEeecCCC--ccHHHHH-HHHHHHHHhcCC-CCCCCCCCceEEEE
Q psy16608         87 NRLTIKFNSIEIFCNE-EKTRSFIALGANSCK--TSLTSIV-QAVDKSAQEFKL-PTYYEEPNFHASIA  150 (202)
Q Consensus        87 ~~F~l~~~~~~~f~n~-~~~RvF~~l~v~~~~--~~L~~L~-~~i~~~l~~~g~-~~~~~~~~pHiSia  150 (202)
                      +|+.+.+.++..+..+ ..+|+.+| .|.+..  ..|.... +.|-....+.|+ ....++-..|+|+.
T Consensus       214 kp~~i~lkG~~~mnddP~~~kVLYA-kv~~~~~e~~l~~~~~~~i~~~f~~~~li~k~~~~~kLH~Tvm  281 (345)
T KOG2814|consen  214 KPLFIDLKGLDKMNDDPSLTKVLYA-KVEPDDYEKFLQHRCGERILERFVASGLIKKESSSLKLHCTVM  281 (345)
T ss_pred             CceeeeccchhhhcCCHhHheeeee-eccCcchHHHHHHHHHHHHHHHHHHhcchhccccccEEEEEEe
Confidence            7899999999988766 55899998 787654  2233333 333344444443 44555678999999

>PF06299 DUF1045: Protein of unknown function (DUF1045); InterPro: IPR009389 This family consists of several hypothetical proteins from Agrobacterium, Rhizobium and Brucella species

Probab=95.20  E-value=0.36  Score=38.01  Aligned_cols=85  Identities=16%  Similarity=0.226  Sum_probs=59.9

Q ss_pred             eeeeeeccCcc-cHHHHHHHHHHhhccCCceEEE---eCceEEEecCCCceEEEEEeecCCCccHHHHHHHHHHHHHhc-
Q psy16608         60 SLSKTLVIPYH-WIDTLVETLGNNLRHLNRLTIK---FNSIEIFCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEF-  134 (202)
Q Consensus        60 SLs~~~~~~~~-~i~~~~~~L~~~l~~~~~F~l~---~~~~~~f~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~~l~~~-  134 (202)
                      ||+-++.+... .-+.+.+.++...+...||.+.   +..+|         -|+++-..+....|..|...+-..+..| 
T Consensus         1 TLKaPF~La~g~~~~~L~~a~~~~a~~~~pf~l~~L~v~~lg---------~FlALvp~~~~~~L~~LAa~cV~~~d~fR   71 (160)
T PF06299_consen    1 TLKAPFRLAEGASEADLLAALAAFAARFAPFELPGLEVARLG---------GFLALVPAGPCPALQALAAACVRAFDPFR   71 (160)
T ss_pred             CCCCCcccCCCCCHHHHHHHHHHHhccCCCccCCceeEeeEC---------CEEEEeeCCCCHHHHHHHHHHHHhhhhcc
Confidence            67777888875 6788999999888889998765   33443         4677644554567888877766555555 


Q ss_pred             ---------------------------CCCCCCCCCCceEEEEeec
Q psy16608        135 ---------------------------KLPTYYEEPNFHASIAWCL  153 (202)
Q Consensus       135 ---------------------------g~~~~~~~~~pHiSia~~~  153 (202)
                                                 |.|.=-+.|+|||||--.+
T Consensus        72 APls~aelaRR~~~~Ls~~Q~~~L~rWGYPYV~deFRFHmTLTg~l  117 (160)
T PF06299_consen   72 APLSEAELARRRPAGLSPRQRANLERWGYPYVMDEFRFHMTLTGRL  117 (160)
T ss_pred             CCCChHHHhhcCcccCCHHHHHHHHHhCCCceeCcCEeeEEeCCCC
Confidence                                       4444445789999998544

The function of this family is unknown.

>PHA02977 hypothetical protein; Provisional

Probab=94.23  E-value=0.39  Score=37.24  Aligned_cols=142  Identities=11%  Similarity=0.161  Sum_probs=76.9

Q ss_pred             ccCccccccceEEEEecCCCHHHHHHHHHHHHHhhccccccCCCCeEeeeeeeccCcccHHHHHHHHHHhhcc--CCceE
Q psy16608         13 SFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVGISVEVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRH--LNRLT   90 (202)
Q Consensus        13 ~~pH~~G~w~tfi~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~--~~~F~   90 (202)
                      .+|----||++--|.++++ ...+.+ ++.+.-+.  +.+-.-.-||||.-   -..+|-+.|.. .++.+..  .++.+
T Consensus        30 ~vpwdy~nwasinfydirl-d~~isd-~~niaiky--mtgcdi~phitlgi---an~dq~~~f~~-fk~~~~d~dl~sis  101 (201)
T PHA02977         30 EVPWDYCNWASINFYDIRL-DKDISD-LENIAIKY--MTGCDIFPHITLGI---ANKDQCDNFEN-FKELIKDIDLQSIS  101 (201)
T ss_pred             eccccccccceeeeEEEEe-cCCcch-hhhhhhhh--hccCCCCcceeeec---cCccHhHHHHH-HHHHhhcccceeEE
Confidence            3566667999999999887 444433 22221111  11222345999853   34445555542 3444443  34455


Q ss_pred             EEeCceEEEecCCCce-------EEEEEeecCCCccHHHHHHHHHHHH----HhcCCCCCCCCCCceEEEEeecCCCchh
Q psy16608         91 IKFNSIEIFCNEEKTR-------SFIALGANSCKTSLTSIVQAVDKSA----QEFKLPTYYEEPNFHASIAWCLQDKTAT  159 (202)
Q Consensus        91 l~~~~~~~f~n~~~~R-------vF~~l~v~~~~~~L~~L~~~i~~~l----~~~g~~~~~~~~~pHiSia~~~~~~~~~  159 (202)
                      +.-...-.||....++       . .++.++. ++.|+.|...+-.++    .-||=-.-.-+-.||+|||+++.+..+.
T Consensus       102 ~~cke~icfpqs~askelga~g~a-vvmkle~-sddlkalrnvl~n~vp~pkdifg~i~~d~~w~phitigyv~~dd~dn  179 (201)
T PHA02977        102 FTCKEEICFPQSNASKELGAKGCA-VVMKLEA-SDDLKALRNVLFNAVPCPKDIFGDILSDNPWCPHITIGYVKADDEDN  179 (201)
T ss_pred             EEeeeeEeccccchhhhhCcCccE-EEEEEEe-chHHHHHHHHhhcccCCcHHhhcccccCCCCCCceEEEeecccchhh
Confidence            5555666787655443       2 1233433 356777666543332    1244333344678999999998776554


Q ss_pred             HHHHH
Q psy16608        160 LKPLL  164 (202)
Q Consensus       160 l~~~~  164 (202)
                      -++++
T Consensus       180 k~r~i  184 (201)
T PHA02977        180 KKRFI  184 (201)
T ss_pred             HHHHH
Confidence            44443

>COG5255 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.81  E-value=2  Score=35.20  Aligned_cols=148  Identities=14%  Similarity=0.187  Sum_probs=79.4

Q ss_pred             cCcccccc-ceEEEEecCCCHHHHHHHHHHHHHhhcccc-------ccCCCCeEeeee--------e----eccCcc-cH
Q psy16608         14 FPHQRNSW-ATLVYIPLQTNLARLYAMLKEELNSVGISV-------EVIPEPHLSLSK--------T----LVIPYH-WI   72 (202)
Q Consensus        14 ~pH~~G~w-~tfi~i~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~lHISLs~--------~----~~~~~~-~i   72 (202)
                      |.|..||- -||++=.-     +..+.+-.+.+++..+-       ..+..+|+|+--        +    -+++-+ -|
T Consensus        36 f~pfpGNTVVchl~~gs-----~t~~vvl~i~~r~~~mpfadklt~tP~sSlHMTvfqg~~e~~R~~~~WpqdlPLDtpi  110 (239)
T COG5255          36 FLPFPGNTVVCHLVTGS-----DTEEVVLIIRSRYLEMPFADKLTFTPVSSLHMTVFQGLIEERRELPYWPQDLPLDTPI  110 (239)
T ss_pred             cccCCCCeEEEeccCCC-----chHHHHHHHHHHhhccchhhhhccCCcchhhHHHHHHHhhhcccCCCCCccCCCCCcH
Confidence            67778883 56665422     34555666677666542       778899999842        1    122222 45


Q ss_pred             HHHHHHHHHhhccCCceEEEeCceEEEecCCCceEEEEEeecCCCccHHHHHHHHHHH-HHhcCC-CCCCCCCCceEEEE
Q psy16608         73 DTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTSLTSIVQAVDKS-AQEFKL-PTYYEEPNFHASIA  150 (202)
Q Consensus        73 ~~~~~~L~~~l~~~~~F~l~~~~~~~f~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~~-l~~~g~-~~~~~~~~pHiSia  150 (202)
                      +..-+-..+.++.++-+.=.|+   .=..+.+|-.+.+.++...+   ..++.++... -..+|. -+..+.+.||||||
T Consensus       111 ~~~~~~~~erLk~F~l~~~~~~---mrvte~rp~~i~v~paddad---~~~l~~~Rd~ls~~~g~r~P~HDaY~FHITlg  184 (239)
T COG5255         111 DAITDYYAERLKIFPLLDEEFN---MRVTEMRPQGILVEPADDAD---AKILEEWRDYLSEKFGYRHPDHDAYQFHITLG  184 (239)
T ss_pred             HHHHHHHHHHHhcccCCchhhc---chhhcccccceEeccCCHHH---HHHHHHHHHHHhhhhcccCCCCcceEEEEEee
Confidence            6666666677766543321222   11134456665655554432   2333444333 345664 34556799999999


Q ss_pred             ----eecCCCchhHHHHHHHHHHhhh
Q psy16608        151 ----WCLQDKTATLKPLLTKLDNIFT  172 (202)
Q Consensus       151 ----~~~~~~~~~l~~~~~~l~~~~~  172 (202)
                          |...+..+.+.+.++++-+++.
T Consensus       185 Yl~~wltpee~a~~q~~l~e~~e~la  210 (239)
T COG5255         185 YLRIWLTPEEEAEWQAVLDELLEILA  210 (239)
T ss_pred             eEeeecChhhhHHHHHHHHHHHHHHH
Confidence                4333333334445555444443

>PF08302 tRNA_lig_CPD: Fungal tRNA ligase phosphodiesterase domain; InterPro: IPR015965 This entry represents a phosphodiesterase domain found in fungal tRNA ligases []

Probab=90.73  E-value=9.4  Score=32.33  Aligned_cols=119  Identities=8%  Similarity=0.038  Sum_probs=64.9

Q ss_pred             ceEEEEecCCCHHHHHHHHHHHHHhh-----------ccccccCCCCeEeeeeeeccCccc----HHHHHHHHHHhhccC
Q psy16608         22 ATLVYIPLQTNLARLYAMLKEELNSV-----------GISVEVIPEPHLSLSKTLVIPYHW----IDTLVETLGNNLRHL   86 (202)
Q Consensus        22 ~tfi~i~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~lHISLs~~~~~~~~~----i~~~~~~L~~~l~~~   86 (202)
                      +.|+.|.++  ..++.+.|..+...-           +..--....+||||........+.    ++.+.+.....+...
T Consensus        72 p~Yf~i~i~--~~~i~~~l~~~f~~~~~~~~~~~~~L~~~~RvQ~~FHVTL~H~as~k~~~~k~lW~~y~~~~~~~~~~~  149 (257)
T PF08302_consen   72 PEYFGISIP--TQDIKSLLEKLFEDSPPETARFYNQLKNSRRVQPEFHVTLIHRASSKEQPAKELWKRYTKLYKSALKKN  149 (257)
T ss_pred             CeEEEEECC--HHHHHHHHHHHhccCCHHHHHHHHHHHhCCCCCCCCeEEEEecccCCcCcchHHHHHHHHHHHhhcccc
Confidence            578888885  567777777766543           111133467999999888888744    455555544444321


Q ss_pred             -----------CceEEEeCceEEEecCCCceEEEEEeecCCCccHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEeecCC
Q psy16608         87 -----------NRLTIKFNSIEIFCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQD  155 (202)
Q Consensus        87 -----------~~F~l~~~~~~~f~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~~~~~~~~~pHiSia~~~~~  155 (202)
                                 ..+.+++.++-   .+++-=.|-+ .+......-..          .-++  ..-+..||||||-...+
T Consensus       150 ~~~~~~~~~~~~~~~v~L~rlv---wd~rimai~V-~~~~~~~~~~~----------~~~~--~c~N~~~HITVGT~~~~  213 (257)
T PF08302_consen  150 PKQEPTQTPTLGSCDVRLERLV---WDDRIMAIVV-RIVPPEDEEDE----------VPEW--ECTNKIPHITVGTRDPG  213 (257)
T ss_pred             cccccccccccceEEEEEEEEE---ECCcEEEEEE-EccCccccccc----------cCCc--ccCCCCCEEEEEcCCCC
Confidence                       23556665552   4444433333 23221110000          1111  23467999999976555


Q ss_pred             Cch
Q psy16608        156 KTA  158 (202)
Q Consensus       156 ~~~  158 (202)
                      ..+
T Consensus       214 VkP  216 (257)
T PF08302_consen  214 VKP  216 (257)
T ss_pred             CCc
Confidence            444

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>TIGR02258 2_5_ligase 2'-5' RNA ligase

Probab=87.30  E-value=1.8  Score=33.85  Aligned_cols=49  Identities=12%  Similarity=0.277  Sum_probs=26.1

Q ss_pred             ceEEEEEeecCCCccHHHHHHHHHHHHHh-cCCCCCCCCCCceEEEEeecCCCc
Q psy16608        105 TRSFIALGANSCKTSLTSIVQAVDKSAQE-FKLPTYYEEPNFHASIAWCLQDKT  157 (202)
Q Consensus       105 ~RvF~~l~v~~~~~~L~~L~~~i~~~l~~-~g~~~~~~~~~pHiSia~~~~~~~  157 (202)
                      .|.|+|+.+.+   .+...+..+.+.+.. ...-....+..+||||+.. ++..
T Consensus         1 ~R~FiAl~~p~---~~~~~l~~~~~~l~~~~~~~r~~~~~~~HiTL~fl-g~~~   50 (179)
T TIGR02258         1 MRLFIAIDLPP---EIREQLSRIQRKLKSPLDGIKWVPPENLHITLKFL-GEVD   50 (179)
T ss_pred             CeEEEEecCCH---HHHHHHHHHHHHhhccCCCcEECChHHCEEEEEEc-cCCC
Confidence            38999976643   344444444444331 1111222345779999964 5543

This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles.

>PF10469 AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; InterPro: IPR019510 This entry represents the N-terminal nuclear localisation signal-containing domain found in the cyclic AMP-dependent protein kinase A (PKA) anchor protein, AKAP7

Probab=86.94  E-value=1.7  Score=35.22  Aligned_cols=58  Identities=10%  Similarity=0.165  Sum_probs=31.6

Q ss_pred             ceEEEEEeecCCCccHHHHHHHHHH-HHHhc-CC--CCCCCCCCceEEEEeecCCCchhHHHHH
Q psy16608        105 TRSFIALGANSCKTSLTSIVQAVDK-SAQEF-KL--PTYYEEPNFHASIAWCLQDKTATLKPLL  164 (202)
Q Consensus       105 ~RvF~~l~v~~~~~~L~~L~~~i~~-~l~~~-g~--~~~~~~~~pHiSia~~~~~~~~~l~~~~  164 (202)
                      |--|+++++...  .|..=++.+.+ ++... ++  +.+..+.+.||||+-..-...+.++++.
T Consensus         1 pthFl~ipl~~~--~i~~~~~~fq~~v~~~~~~~~~~~~i~~~~lHlTL~vl~L~~~~~i~~a~   62 (209)
T PF10469_consen    1 PTHFLCIPLNSP--EIQEKFKEFQNEVLSKDPGLDESAFIPPEKLHLTLGVLSLDTDEEIEKAK   62 (209)
T ss_pred             CCeEEEEECCCH--HHHHHHHHHHHHHHhhcCCCCHHHcCCcccceEEEEEeeCCCHHHHHHHH
Confidence            346899999543  33333333333 33222 34  2234578999999966555444554333

This protein anchors PKA for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes []. This domain carries the nuclear localisation signal (NLS) KKRKK, that indicates the cellular destiny of this anchor protein []. Binding to the regulatory subunits RI and RII of PKA is mediated via the RI-RII subunit-binding domain at the C terminus.

>COG1514 LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]

Probab=85.99  E-value=3.5  Score=33.03  Aligned_cols=50  Identities=18%  Similarity=0.327  Sum_probs=31.9

Q ss_pred             ceEEEEEeecCCCccHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEeecCCCch
Q psy16608        105 TRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTA  158 (202)
Q Consensus       105 ~RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~~~~~~~~~pHiSia~~~~~~~~  158 (202)
                      .|.|+|+.+..   .+...+..+.+-+...+.-+-+++..+||||.. +|+..+
T Consensus         1 ~RlFiAl~~p~---~i~~~i~~~~~~~~~~~~~k~v~~en~HiTL~f-lGev~e   50 (180)
T COG1514           1 MRLFIALDPPA---EIAERLARIRARLKGARAIKWVEPENLHITLKF-LGEVDE   50 (180)
T ss_pred             CeeEEEecCCH---HHHHHHHHHHHhcCcccccccccccCceEEEEc-cCCcCc
Confidence            48999976643   354444444444443334456778899999998 476654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
4h7w_A	193	Crystal Structure Of Human C16orf57 Length = 193		3e-25

>pdb|4H7W|A Chain A, Crystal Structure Of Human C16orf57 Length = 193

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 100/197 (50%), Gaps = 13/197 (6%)
Query: 13  SFPHQRNSWATLVYIPLQTN---LARLYAMLKEELNSVGISVEVIPEPHLSLSKTLVIPY 69
           +FPH+R +WAT VY+P +     L  L  +L      V   V  +   HLSLS+++V+ +
Sbjct: 1   TFPHERGNWATHVYVPYEAKEEFLDLLDVLLPHAQTYVPRLVR-MKVFHLSLSQSVVLRH 59
Query: 70  HWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTSLTSIVQAVDK 129
           HWI   V+ L   +   +R     N ++I+ N+EKTR+FI L   S       +V  VD+
Sbjct: 60  HWILPFVQALKARMTSFHRFFFTANQVKIYTNQEKTRTFIGLEVTSGHAQFLDLVSEVDR 119
Query: 130 SAQEFKLPTYYEEPNFHASIAWCLQDXXXXXXXXXXXXDNIFTQFKLTSDESFHVVTHIH 189
             +EF L T+Y++P+FH S+AWC+ D                 Q  +   E   V+  +H
Sbjct: 120 VMEEFNLTTFYQDPSFHLSLAWCVGDARLQLEGQCLQE----LQAIVDGFEDAEVLLRVH 175
Query: 190 M-----KTGNKFYSFPL 201
                 K+GNKF+S PL
Sbjct: 176 TEQVRCKSGNKFFSMPL 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
1vgj_A	184	Hypothetical protein PH0099; alpha+beta, LIGT-like	99.91
1iuh_A	198	2'-5' RNA ligase; riken structural genomics/proteo	99.88
2vfk_A	205	AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Hom	99.82
1jh6_A	189	Cyclic phosphodiesterase; ADP-ribose 1'',2''-cycli	99.75
2d4g_A	171	Hypothetical protein BSU11850; beta barrel, alpha	99.74
2fsq_A	243	ATU0111 protein; alpha-beta barrel, structural gen	97.73
2vfk_A	205	AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Hom	90.27
1jh6_A	189	Cyclic phosphodiesterase; ADP-ribose 1'',2''-cycli	89.23
1vgj_A	184	Hypothetical protein PH0099; alpha+beta, LIGT-like	87.13
1iuh_A	198	2'-5' RNA ligase; riken structural genomics/proteo	86.82

>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A

Probab=99.91  E-value=3.4e-23  Score=163.81  Aligned_cols=157  Identities=15%  Similarity=0.157  Sum_probs=127.3

Q ss_pred             cceEEEEecCCCHHHHHHHHHHHHHhhccc---c--ccCCCCeEeeeeeeccCcccHHHHHHHHHHhhccCCceEEEeCc
Q psy16608         21 WATLVYIPLQTNLARLYAMLKEELNSVGIS---V--EVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNS   95 (202)
Q Consensus        21 w~tfi~i~~~~~~~~~~~~l~~~~~~~~~~---~--~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~~~~F~l~~~~   95 (202)
                      +|.|+.|.++.   ++++.|.++++.+...   .  +.++++||||.|+|+++.++++.+.+.|++.++...||++++++
T Consensus         1 mR~Fial~~p~---~~~~~l~~~~~~l~~~~~~~~~v~~~~lHiTL~flg~~~~~~~~~l~~~l~~~~~~~~pf~l~l~g   77 (184)
T 1vgj_A            1 MRAFIAIDVNE---SVRDSLVRAQDYIGSKEAKIKFVERENLHITLKFLGEITEEQAEEIKNILKKIAEKYKKHEVKVKG   77 (184)
T ss_dssp             CEEEEEEECCH---HHHHHHHHHHHHHCSSSEEEEECCGGGCEEEEEEEESCCHHHHHHHHHHHHHHHTTSBCEEEEEEE
T ss_pred             CeEEEEEcCCH---HHHHHHHHHHHHHhhcCCCcEecCccccEEEEEeecCCCHHHHHHHHHHHHHHHccCCCeEEEEee
Confidence            36777777765   8899999999988752   2  78999999999999999999999999999998889999999999


Q ss_pred             eEEEecCCCceEEEEEeecCCCccHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEeecCCCchhHHHHHHHHHHhhhhcc
Q psy16608         96 IEIFCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIFTQFK  175 (202)
Q Consensus        96 ~~~f~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~~~~~~~~~pHiSia~~~~~~~~~l~~~~~~l~~~~~~~~  175 (202)
                      +|+|++..+|||+|+ +|.++ ..|..|++.|.+.+...|++.+. +|+||||||+......  .    .++.+.++.+.
T Consensus        78 ~g~F~~~~~p~vl~~-~v~~~-~~L~~L~~~l~~~l~~~g~~~~~-~f~PHiTLar~~~~~~--~----~~~~~~~~~~~  148 (184)
T 1vgj_A           78 IGVFPNPNYIRVIWA-GIEND-EIIREMAREIEDELAKLGFKKEG-NFVAHITLGRVKFVKD--K----LGLTMKLKELA  148 (184)
T ss_dssp             EEEEECSSSEEEEEE-EEETC-HHHHHHHHHHHHHHHTTTCCCCC-CCCCEEEEEEEEEESC--H----HHHHHHHHHTT
T ss_pred             EeeCCCCCCCcEEEE-EecCC-HHHHHHHHHHHHHHHHcCCCCCC-CccceEEEEeecccCc--H----HHHHHHHHHhc
Confidence            999999999999997 89775 78999999999999999998877 9999999998764332  0    12223333332


Q ss_pred             cCCce-eecccceEEEe
Q psy16608        176 LTSDE-SFHVVTHIHMK  191 (202)
Q Consensus       176 ~~~~~-~~~~v~~v~~k  191 (202)
                       +... .+. |+++.+-
T Consensus       149 -~~~~~~~~-v~~~~L~  163 (184)
T 1vgj_A          149 -NEDFGSFV-VDAIELK  163 (184)
T ss_dssp             -TCEEEEEE-ECEEEEE
T ss_pred             -CCCCCcEE-EeEEEEE
Confidence             2223 677 8888775

>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2

Probab=99.88  E-value=8.9e-22  Score=158.26  Aligned_cols=129  Identities=16%  Similarity=0.087  Sum_probs=114.7

Q ss_pred             cceEEEEecCCCHHHHHHHHHHHHHhhccc----cccCCCCeEeeeeeeccCcccHHHHHHHHHHhhccCCceEEEeCce
Q psy16608         21 WATLVYIPLQTNLARLYAMLKEELNSVGIS----VEVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSI   96 (202)
Q Consensus        21 w~tfi~i~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~~~~F~l~~~~~   96 (202)
                      +|.|+.|.++.   ++.+.|.++++.+...    .+.++++||||.|+|+++.++++.+.+.|++.++...+|+|+++++
T Consensus         1 mRlFial~~p~---~~~~~l~~~~~~l~~~~~~r~v~~~~~HiTL~flgev~~~~~~~l~~~l~~~~~~~~pf~l~l~g~   77 (198)
T 1iuh_A            1 MRLFYAVFLPE---EVRAALVEAQTKVRPFRGWKPVPPHQLHLTLLFLGERPEEELPDYLALGHRLARLEAPFRARLRGT   77 (198)
T ss_dssp             CEEEEEEECCH---HHHHHHHHHHGGGTTCTTEEECCGGGCEEEEEEEEECCGGGHHHHHHHHHHHHHHSCCEEEEEEEE
T ss_pred             CEEEEEEeCCH---HHHHHHHHHHHHhhhhcCCcccCCCCCEEEEEeCCcCCHHHHHHHHHHHHHHhccCCCeEEEEcce
Confidence            46777777765   8899999999988642    2788999999999999999999999999999888889999999999


Q ss_pred             EEEecCCCceEEEEEeecCCCccHHHHHHHHHHHHHhc-C-----CCCCCCCCCceEEEEeecCC
Q psy16608         97 EIFCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEF-K-----LPTYYEEPNFHASIAWCLQD  155 (202)
Q Consensus        97 ~~f~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~~l~~~-g-----~~~~~~~~~pHiSia~~~~~  155 (202)
                      |+|++.++|||+|+ +|  +...|..|++.|.+.+... |     ++.+.++|+||||||+....
T Consensus        78 g~F~~~~~p~vl~l-~v--~~~~L~~L~~~l~~~l~~~~g~~~~~~~~~~~~f~PHiTLar~~~~  139 (198)
T 1iuh_A           78 GYFPNEGTPRVWFA-KA--EAEGFLRLAEGLRAGVEELLGEEAVRIPGWDKPFKPHITLARRKAP  139 (198)
T ss_dssp             EEESSSSSCSEEEE-EE--ECHHHHHHHHHHHHHHHHHHGGGGGGSTTTTSCCCCEEEEEEESSC
T ss_pred             EECCCCCCCCEEEE-EC--CCHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCcEEeEeccCc
Confidence            99999999999997 78  4578999999999999998 9     98888999999999997643

>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A

Probab=99.82  E-value=3.3e-19  Score=143.35  Aligned_cols=161  Identities=14%  Similarity=0.074  Sum_probs=120.0

Q ss_pred             cceEEEEecCCCHHHHHHHHHHHHHhhcc-------ccccCCCCeEeeeeeeccCcccHHHHHHHHHHhhccC------C
Q psy16608         21 WATLVYIPLQTNLARLYAMLKEELNSVGI-------SVEVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHL------N   87 (202)
Q Consensus        21 w~tfi~i~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~~------~   87 (202)
                      +|.|++|+++.  +++++.|.++++.+..       ..+.++++||||.|+|+++.++++.+.+.|++.....      .
T Consensus         3 ~r~Fial~~~~--~~~~~~l~~~~~~l~~~~~~~~~~~v~~~~~HiTL~flg~~~~~~~~~l~~~l~~~~~~~~~~~~~~   80 (205)
T 2vfk_A            3 PNYFLSIPITN--KKITAGIKVLQNSILRQDNRLTKAMVGDGSFHITLLVMQLLNEDEVNIGTDALLELKPFVEEILEGK   80 (205)
T ss_dssp             CCEEEEEECCC--HHHHHHHHHHHHHHHHHCGGGGGGBCCTTCCEEEEEEECCCSHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             CCEEEEEEcCC--HHHHHHHHHHHHHHHhcCcchHHHhCCcCccEEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            57888888874  3688888888887742       2388999999999999999999999999888765544      8


Q ss_pred             ceEEEeCceEEEecCCCceEEEEEeecCC--CccHHHHHHHHHHHHHhcCCC-CCCCCCCceEEEEeecCCCchhHHHHH
Q psy16608         88 RLTIKFNSIEIFCNEEKTRSFIALGANSC--KTSLTSIVQAVDKSAQEFKLP-TYYEEPNFHASIAWCLQDKTATLKPLL  164 (202)
Q Consensus        88 ~F~l~~~~~~~f~n~~~~RvF~~l~v~~~--~~~L~~L~~~i~~~l~~~g~~-~~~~~~~pHiSia~~~~~~~~~l~~~~  164 (202)
                      ||.|+++++|+|++    ||+|+ +|.++  .+.|..|++.|.+.+...|++ .++++|+||||||+........- ...
T Consensus        81 pf~l~l~g~~~F~~----~vl~~-~v~~~~~~~~L~~L~~~l~~~~~~~g~~~~~~~~f~PHiTlar~~~~~~~~~-~~~  154 (205)
T 2vfk_A           81 HLTLPFHGIGTFQG----QVGFV-KLADGDHVSALLEIAETAKRTFQEKGILAGESRTFKPHLTFMKLSKAPMLWK-KGV  154 (205)
T ss_dssp             CCEEEEEEEEEETT----TEEEE-EECCSHHHHHHHHHHHHHHHHHHTTTCCBCCSSCCCCCEEEEEGGGCHHHHH-TTC
T ss_pred             CcEEEEechhhCCC----cEEEE-eecccccHHHHHHHHHHHHHHHHHcCCCcCCCCCcceEEEEEecccchhhhh-ccc
Confidence            99999999999997    69897 78764  267999999999999999994 57889999999999753210000 000


Q ss_pred             HHH-HHhhhhcccCCce-eecccceEEEe
Q psy16608        165 TKL-DNIFTQFKLTSDE-SFHVVTHIHMK  191 (202)
Q Consensus       165 ~~l-~~~~~~~~~~~~~-~~~~v~~v~~k  191 (202)
                      ..+ .+.++.+. +... .+. |++|.+-
T Consensus       155 ~~~~~~~l~~~~-~~~~~~~~-v~~i~L~  181 (205)
T 2vfk_A          155 RKIEPGLYEQFI-DHRFGEEI-LYQIDLC  181 (205)
T ss_dssp             SSCCGGGGGGGT-TCEEEEEE-CCEEEEE
T ss_pred             cccCHHHHHHhc-CCcCcEEE-eCEEEEE
Confidence            112 13343333 2233 678 8999883

>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*

Probab=99.75  E-value=3.1e-17  Score=130.97  Aligned_cols=119  Identities=9%  Similarity=0.043  Sum_probs=97.8

Q ss_pred             ccceEEEEecCCCHHHHHHHHHHHHHhhcccc-ccCCCCeEeeeeeeccCcccHHHHHHHHHHhhccCCceEEEeCceEE
Q psy16608         20 SWATLVYIPLQTNLARLYAMLKEELNSVGISV-EVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEI   98 (202)
Q Consensus        20 ~w~tfi~i~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~~~~F~l~~~~~~~   98 (202)
                      .-++|+.++ |.   ++++.|.++++.++... ..+.++||||  +|+++.. .+.+.+.|++..+..+||.|+++++|+
T Consensus         7 ~~~~f~~~p-p~---~~~~~l~~~~~~l~~~~~~~~~~~HiTL--lG~~~~~-~~~l~~~L~~~a~~~~pf~l~l~g~g~   79 (189)
T 1jh6_A            7 DVYSVWALP-DE---ESEPRFKKLMEALRSEFTGPRFVPHVTV--AVSAYLT-ADEAKKMFESACDGLKAYTATVDRVST   79 (189)
T ss_dssp             EEEEEEEEE-CT---TTHHHHHHHHHHHHHHHTCCCCCCCEEE--EEEEEEC-HHHHHHHHHHHHHTCBCEEEEEEEEEE
T ss_pred             CcEEEEEEC-CH---HHHHHHHHHHHHHHHHcCCCCCCCEEEE--eCCCCCC-HHHHHHHHHHHHhhCCCeEEEEcceec
Confidence            345666666 44   67788888888776543 6778999999  8999877 899999999988889999999999999


Q ss_pred             EecCCCceEEEEEeecCCCccHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEeec
Q psy16608         99 FCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCL  153 (202)
Q Consensus        99 f~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~~~~~~~~~pHiSia~~~  153 (202)
                      |  ...+|++|+ +|.. ...|..|++.+++.   +|+++. ++|.||||||+..
T Consensus        80 ~--~~~~rvlw~-~v~~-~~~L~~L~~~v~~~---~g~~~~-~~f~PHlTLar~~  126 (189)
T 1jh6_A           80 G--TFFFQCVFL-LLQT-TPEVMEAGEHCKNH---FNCSTT-TPYMPHLSLLYAE  126 (189)
T ss_dssp             E--EETTEEEEE-EECC-CHHHHHHHHHHHHH---TTCCCC-SCCCCEEEEECCC
T ss_pred             c--CccceEEEE-eecC-CHHHHHHHHHHHHH---hCCCCC-CCCCCeEEEEEec
Confidence            4  568999996 8975 47899999999886   788764 6899999999864

>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}

Probab=99.74  E-value=1.5e-17  Score=129.82  Aligned_cols=147  Identities=15%  Similarity=0.120  Sum_probs=109.1

Q ss_pred             ceEEEEecCCCHHHHHHHHHHHHHhhcccc--ccCCCCeEeeeeeeccCcccHHHHHHHHHHhhccCCceEEEeCceEEE
Q psy16608         22 ATLVYIPLQTNLARLYAMLKEELNSVGISV--EVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIF   99 (202)
Q Consensus        22 ~tfi~i~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~~~~F~l~~~~~~~f   99 (202)
                      |.|+.|.++   +++.+.|.++++.+....  +.+   ||||.|+|+++.++++.+.+.|++.++...||.++++++|.|
T Consensus         2 R~Fiai~~~---~~~~~~l~~~~~~~~~~~~~v~p---HiTL~f~g~~~~~~~~~l~~~l~~~~~~~~pf~l~l~~~g~F   75 (171)
T 2d4g_A            2 KYGIVLFPS---KKLQDLANSYRKRYDPSYSLIPP---HLTLRASFECAEEKADQLVSHLRNIAKESHPLVLKMTKYSSF   75 (171)
T ss_dssp             EEEEEBCCC---HHHHHHHHHHHHHHCGGGGTSCS---CBCCSSCEECCGGGHHHHHHHHHHHHHTCCCEEEEEEEEEEC
T ss_pred             eEEEEEeCC---HHHHHHHHHHHHHhCcccCCCCC---eEEeecCCcCChHHHHHHHHHHHHHHccCCCEEEEECCcEEe
Confidence            566666665   488999999999885433  444   999999999999999999999999988899999999999999


Q ss_pred             ecCCCceEEEEEeecCCCccHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEeecCCCchhHHHHHHHHHHhhhhccc-CC
Q psy16608        100 CNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIFTQFKL-TS  178 (202)
Q Consensus       100 ~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~~~~~~~~~pHiSia~~~~~~~~~l~~~~~~l~~~~~~~~~-~~  178 (202)
                      +  .++.++|+ ++.. ...|..|++.+.+.+..   ..+.++|+||||||+....  +.+       .+.++.+.. ..
T Consensus        76 ~--~~~~vl~l-~~~~-~~~L~~L~~~l~~~~~~---~~~~~~f~PHiTLar~~~~--~~~-------~~~~~~~~~~~~  139 (171)
T 2d4g_A           76 A--PVNNVIYI-KAEP-TEELKTLNEKLYTGVLA---GEQEYNFVPHVTVGQNLSD--DEH-------SDVLGQLKMQEV  139 (171)
T ss_dssp             T--TTCCCEEE-EECC-CHHHHHHHHHTTSGGGC---SCCCSCCCCEEEEECSCCH--HHH-------HHHHHHHTTSCC
T ss_pred             C--CCCcEEEE-EccC-ChHHHHHHHHHHhcccc---cccCCCCCCeEEeecCCCH--HHH-------HHHHHHhcCCCC
Confidence            7  11239886 7876 57899999999887655   3467789999999985421  222       223333210 11


Q ss_pred             ceeecccceEEEe
Q psy16608        179 DESFHVVTHIHMK  191 (202)
Q Consensus       179 ~~~~~~v~~v~~k  191 (202)
                      +..+. |++|.+-
T Consensus       140 ~~~~~-v~~i~L~  151 (171)
T 2d4g_A          140 SHEEI-VDRFHLL  151 (171)
T ss_dssp             CEEEE-ECEEEEE
T ss_pred             ceeEE-ECeEEEE
Confidence            34677 8888765

>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4

Probab=97.73  E-value=0.0007  Score=55.65  Aligned_cols=115  Identities=10%  Similarity=0.127  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHhhcccc-------ccCCCCeEeeeeeec------------cC-cccHHHHHHHHHHhhcc---CCceE
Q psy16608         34 ARLYAMLKEELNSVGISV-------EVIPEPHLSLSKTLV------------IP-YHWIDTLVETLGNNLRH---LNRLT   90 (202)
Q Consensus        34 ~~~~~~l~~~~~~~~~~~-------~~~~~lHISLs~~~~------------~~-~~~i~~~~~~L~~~l~~---~~~F~   90 (202)
                      .+..+.+.++++++....       ..++.+|+||--...            +. +..++..-+.+.+.++.   ..+|.
T Consensus        53 s~~~~~l~~iq~~L~~~~~~~~~~~lPpsS~HMTvfdgv~e~~r~~~~wP~~L~~d~~l~~~~~~~~~~l~~~~~~~p~~  132 (243)
T 2fsq_A           53 SQTESAIVSTRQRFLDMPEASQLAFTPVSSLHMTVFQGVIESRRALPYWPQTLPLDTPIDAVTDYYRDRLSTFPTLPAFN  132 (243)
T ss_dssp             SHHHHHHHHHHHHHHTSGGGGGEEECCGGGCEEEEEEEEETTCCSTTSSCTTSCTTCCHHHHHHHHHHHGGGCCCCCCCC
T ss_pred             ChHHHHHHHHHHHHHhccccCceeeCCchhhhhhhccccccccccCCCCCccCcccchHHHHHHHHHHHHhcccCCCCeE
Confidence            356677888888877543       888999999975433            11 22466655566666654   35677


Q ss_pred             EEeCceEEEecCCCceEEEEEeecCCC-ccHHHHHHHHHHHHHhcCC-CCCCCCCCceEEEEeecCCCch
Q psy16608         91 IKFNSIEIFCNEEKTRSFIALGANSCK-TSLTSIVQAVDKSAQEFKL-PTYYEEPNFHASIAWCLQDKTA  158 (202)
Q Consensus        91 l~~~~~~~f~n~~~~RvF~~l~v~~~~-~~L~~L~~~i~~~l~~~g~-~~~~~~~~pHiSia~~~~~~~~  158 (202)
                      +++.++  .+    .-+-+ .++.+.+ ..|..+-+.+.+   .+|+ .++...+.+|||||+......+
T Consensus       133 ~~v~~l--~~----~~v~L-~Pade~~~~~L~~~R~~l~q---~lGi~~p~hd~y~fHITLgY~~~~l~~  192 (243)
T 2fsq_A          133 MRVTGL--RP----VGMVM-KGATAEDDSIVALWRDTFAD---FFGYRHPDHDTYEFHITLSYIVSWFEP  192 (243)
T ss_dssp             EEEEEE--ET----TEEEE-EESSHHHHHHHHHHHHHHHH---HHTCCCTTGGGCCEEEECEEESSCBCG
T ss_pred             EEEecc--cc----ceEEE-ecCCHHHHHHHHHHHHHHHH---HhCCCCCCCcceEEEEEEEeccCCCCH
Confidence            776666  11    12222 2443322 456666666665   5665 3345679999999987644443

>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A

Probab=90.27  E-value=2.3  Score=32.70  Aligned_cols=64  Identities=13%  Similarity=0.162  Sum_probs=34.2

Q ss_pred             CceEEEEEeecCCCccHHHHHHHHHHHHHh-c-CC-CCCCCCCCceEEEEeecCCC-chhHHHHHHHHHHh
Q psy16608        104 KTRSFIALGANSCKTSLTSIVQAVDKSAQE-F-KL-PTYYEEPNFHASIAWCLQDK-TATLKPLLTKLDNI  170 (202)
Q Consensus       104 ~~RvF~~l~v~~~~~~L~~L~~~i~~~l~~-~-g~-~~~~~~~~pHiSia~~~~~~-~~~l~~~~~~l~~~  170 (202)
                      +.|.|+++.+..  ..+..-+..+.+.+.. . ++ .....+..+||||+.. ++. .+.+.++...|+++
T Consensus         2 ~~r~Fial~~~~--~~~~~~l~~~~~~l~~~~~~~~~~~v~~~~~HiTL~fl-g~~~~~~~~~l~~~l~~~   69 (205)
T 2vfk_A            2 QPNYFLSIPITN--KKITAGIKVLQNSILRQDNRLTKAMVGDGSFHITLLVM-QLLNEDEVNIGTDALLEL   69 (205)
T ss_dssp             CCCEEEEEECCC--HHHHHHHHHHHHHHHHHCGGGGGGBCCTTCCEEEEEEE-CCCSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCC--HHHHHHHHHHHHHHHhcCcchHHHhCCcCccEEEEEEE-EcCCHHHHHHHHHHHHHH
Confidence            479999987753  1344444444333321 1 22 2344567889999985 543 33344444444443

>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*

Probab=89.23  E-value=0.97  Score=34.81  Aligned_cols=59  Identities=14%  Similarity=0.116  Sum_probs=31.2

Q ss_pred             CCCceEEEEEeecCCC-ccHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEeecCCCchhHHHHHHHHHHhh
Q psy16608        102 EEKTRSFIALGANSCK-TSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIF  171 (202)
Q Consensus       102 ~~~~RvF~~l~v~~~~-~~L~~L~~~i~~~l~~~g~~~~~~~~~pHiSia~~~~~~~~~l~~~~~~l~~~~  171 (202)
                      +...|.||++. .... +.|..+.+.+.+   .++.    .++.|||||   .|+.....++..+.|.++.
T Consensus         5 ~~~~~~f~~~p-p~~~~~~l~~~~~~l~~---~~~~----~~~~~HiTL---lG~~~~~~~~l~~~L~~~a   64 (189)
T 1jh6_A            5 KKDVYSVWALP-DEESEPRFKKLMEALRS---EFTG----PRFVPHVTV---AVSAYLTADEAKKMFESAC   64 (189)
T ss_dssp             CCEEEEEEEEE-CTTTHHHHHHHHHHHHH---HHTC----CCCCCCEEE---EEEEEECHHHHHHHHHHHH
T ss_pred             CCCcEEEEEEC-CHHHHHHHHHHHHHHHH---HcCC----CCCCCEEEE---eCCCCCCHHHHHHHHHHHH
Confidence            45568999875 2221 334444444433   3443    447999999   3554433443334444443

>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A

Probab=87.13  E-value=1.8  Score=32.59  Aligned_cols=62  Identities=19%  Similarity=0.285  Sum_probs=31.7

Q ss_pred             eEEEEEeecCCCccHHHHHHHHHHHHHhcCC-CCCCCCCCceEEEEeecCCCc-hhHHHHHHHHHHhh
Q psy16608        106 RSFIALGANSCKTSLTSIVQAVDKSAQEFKL-PTYYEEPNFHASIAWCLQDKT-ATLKPLLTKLDNIF  171 (202)
Q Consensus       106 RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~-~~~~~~~~pHiSia~~~~~~~-~~l~~~~~~l~~~~  171 (202)
                      |.|+++.+..   .+...+..+.+.+.+.+. .....+..+||||+.. |+.. +.+.++.+.|+++.
T Consensus         2 R~Fial~~p~---~~~~~l~~~~~~l~~~~~~~~~v~~~~lHiTL~fl-g~~~~~~~~~l~~~l~~~~   65 (184)
T 1vgj_A            2 RAFIAIDVNE---SVRDSLVRAQDYIGSKEAKIKFVERENLHITLKFL-GEITEEQAEEIKNILKKIA   65 (184)
T ss_dssp             EEEEEEECCH---HHHHHHHHHHHHHCSSSEEEEECCGGGCEEEEEEE-ESCCHHHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCH---HHHHHHHHHHHHHhhcCCCcEecCccccEEEEEee-cCCCHHHHHHHHHHHHHHH
Confidence            8999986643   344444444444433221 1122345669999985 4433 33443444444443

>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2

Probab=86.82  E-value=1.8  Score=33.36  Aligned_cols=61  Identities=10%  Similarity=0.091  Sum_probs=31.3

Q ss_pred             eEEEEEeecCCCccHHHHHHHHHHHHHhcCCC-CCCCCCCceEEEEeecCCC-chhHHHHHHHHHHhh
Q psy16608        106 RSFIALGANSCKTSLTSIVQAVDKSAQEFKLP-TYYEEPNFHASIAWCLQDK-TATLKPLLTKLDNIF  171 (202)
Q Consensus       106 RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~~-~~~~~~~pHiSia~~~~~~-~~~l~~~~~~l~~~~  171 (202)
                      |.|+++.+..   .+...+..+.+.+.+ ++. ....+..+||||+.. ++. .+.+.+..+.|+++.
T Consensus         2 RlFial~~p~---~~~~~l~~~~~~l~~-~~~~r~v~~~~~HiTL~fl-gev~~~~~~~l~~~l~~~~   64 (198)
T 1iuh_A            2 RLFYAVFLPE---EVRAALVEAQTKVRP-FRGWKPVPPHQLHLTLLFL-GERPEEELPDYLALGHRLA   64 (198)
T ss_dssp             EEEEEEECCH---HHHHHHHHHHGGGTT-CTTEEECCGGGCEEEEEEE-EECCGGGHHHHHHHHHHHH
T ss_pred             EEEEEEeCCH---HHHHHHHHHHHHhhh-hcCCcccCCCCCEEEEEeC-CcCCHHHHHHHHHHHHHHh
Confidence            8999976643   344444444333332 111 122345799999974 443 233444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1iuha_	183	2'-5' RNA ligase LigT {Thermus thermophilus [TaxId	99.86
d1jh6a_	181	tRNA splicing product Appr>p cyclic nucleotide pho	99.38
d2fsqa1	232	Putative phosphoesterase Atu0111 {Agrobacterium tu	97.95
d1iuha_	183	2'-5' RNA ligase LigT {Thermus thermophilus [TaxId	88.69

>d1iuha_ d.61.1.2 (A:) 2'-5' RNA ligase LigT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LigT-like
superfamily: LigT-like
family: 2'-5' RNA ligase LigT
domain: 2'-5' RNA ligase LigT
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=3.4e-21  Score=150.64  Aligned_cols=129  Identities=16%  Similarity=0.105  Sum_probs=107.7

Q ss_pred             cceEEEEecCCCHHHHHHHHHHHHHhhcccc----ccCCCCeEeeeeeeccCcccHHHHHHHHHHhhccCCceEEEeCce
Q psy16608         21 WATLVYIPLQTNLARLYAMLKEELNSVGISV----EVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSI   96 (202)
Q Consensus        21 w~tfi~i~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~~~~F~l~~~~~   96 (202)
                      .|+|++|.+|.   ++.+.|.++.+.+....    +.+++|||||.|+|+++.++++.+.+.|++.++...||.++++++
T Consensus         1 ~RlFial~~p~---~~~~~l~~~~~~l~~~~~~r~~~~~~lHiTL~flg~~~~~~~~~l~~~l~~~~~~~~pf~l~~~~~   77 (183)
T d1iuha_           1 MRLFYAVFLPE---EVRAALVEAQTKVRPFRGWKPVPPHQLHLTLLFLGERPEEELPDYLALGHRLARLEAPFRARLRGT   77 (183)
T ss_dssp             CEEEEEEECCH---HHHHHHHHHHGGGTTCTTEEECCGGGCEEEEEEEEECCGGGHHHHHHHHHHHHHHSCCEEEEEEEE
T ss_pred             CeEEEEEcCCH---HHHHHHHHHHHHcccccccccCCcccCEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence            36788887765   88999999999887644    788999999999999999999999999999988899999999999


Q ss_pred             EEEecCCCceEEEEEeecCCCccHHHHHHHHHHHHHh------cCCCCCCCCCCceEEEEeecCC
Q psy16608         97 EIFCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQE------FKLPTYYEEPNFHASIAWCLQD  155 (202)
Q Consensus        97 ~~f~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~~l~~------~g~~~~~~~~~pHiSia~~~~~  155 (202)
                      ++|++..+++++|. .+..  +.+..|++.+.+++.+      .|++.+.++|+||||||+....
T Consensus        78 ~~f~~~~~~~v~~~-~~~~--~~~~~L~~~l~~~l~~~~~~~~~~~~~~~r~f~PHITlar~~~~  139 (183)
T d1iuha_          78 GYFPNEGTPRVWFA-KAEA--EGFLRLAEGLRAGVEELLGEEAVRIPGWDKPFKPHITLARRKAP  139 (183)
T ss_dssp             EEESSSSSCSEEEE-EEEC--HHHHHHHHHHHHHHHHHHGGGGGGSTTTTSCCCCEEEEEEESSC
T ss_pred             ccCCCCCCcEEEEE-ecCC--hHHHHHHHHHHHHHHHHhhhhccCCCccCCCcCCCEEEEeEcCC
Confidence            99999999999886 4543  4566555555554433      5789999999999999987544

>d1jh6a_ d.61.1.1 (A:) tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: LigT-like
superfamily: LigT-like
family: tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase
domain: tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.38  E-value=6.2e-12  Score=97.08  Aligned_cols=109  Identities=7%  Similarity=-0.024  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHhhcccc-ccCCCCeEeeeeeeccCcccHHHHHHHHHHhhccCCceEEEeCceEEEecCCCceEEEEEee
Q psy16608         35 RLYAMLKEELNSVGISV-EVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGA  113 (202)
Q Consensus        35 ~~~~~l~~~~~~~~~~~-~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~~~~F~l~~~~~~~f~n~~~~RvF~~l~v  113 (202)
                      +....|.++++.+.... +...+.||||.+.+++..+.+...++.+   .....+|.+.++++++|..  ..+++|. ++
T Consensus        18 ~~~~~l~~l~~~l~~~~~~~~~~pHiTL~~~~~~~~~~~~~~l~~~---~~~~~p~~~~~~~~~~~~~--~~~~v~~-~~   91 (181)
T d1jh6a_          18 ESEPRFKKLMEALRSEFTGPRFVPHVTVAVSAYLTADEAKKMFESA---CDGLKAYTATVDRVSTGTF--FFQCVFL-LL   91 (181)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCCCCCCEEEEEEEEECHHHHHHHHHHH---HHTCBCEEEEEEEEEEEEE--TTEEEEE-EE
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCCCeEEEeecCcCCHHHHHHHHHHH---HhhCCCeEEEecccccCCC--CceEEEE-cc
Confidence            44556777777666554 4445789999999999876655555444   4457899999999999986  4556664 67


Q ss_pred             cCCCccHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEeecC
Q psy16608        114 NSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQ  154 (202)
Q Consensus       114 ~~~~~~L~~L~~~i~~~l~~~g~~~~~~~~~pHiSia~~~~  154 (202)
                      .. ...|..|++.+.+.+    ...+.++|.||||||+...
T Consensus        92 ~~-~~~L~~l~~~l~~~~----~~~~~~~f~PHiTLa~~~~  127 (181)
T d1jh6a_          92 QT-TPEVMEAGEHCKNHF----NCSTTTPYMPHLSLLYAEL  127 (181)
T ss_dssp             CC-CHHHHHHHHHHHHHT----TCCCCSCCCCEEEEECCCC
T ss_pred             CC-CHHHHHHHHHHHHhc----CcccCCCCCCeEEEEecCC
Confidence            54 578988888876554    3445678999999998643

>d2fsqa1 d.61.1.4 (A:6-237) Putative phosphoesterase Atu0111 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: LigT-like
superfamily: LigT-like
family: Atu0111-like
domain: Putative phosphoesterase Atu0111
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.95  E-value=0.00017  Score=57.04  Aligned_cols=118  Identities=8%  Similarity=0.104  Sum_probs=73.3

Q ss_pred             cCCCHHHHHHHHHHHHHhhcccc-------ccCCCCeEeeeeeeccC-------------cccHHHHHHHHHHhhccC--
Q psy16608         29 LQTNLARLYAMLKEELNSVGISV-------EVIPEPHLSLSKTLVIP-------------YHWIDTLVETLGNNLRHL--   86 (202)
Q Consensus        29 ~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~lHISLs~~~~~~-------------~~~i~~~~~~L~~~l~~~--   86 (202)
                      ++. .+++.+.|.++++++....       ..++.+|+||--.....             ...++.....+.+.+++.  
T Consensus        42 i~~-~s~~~~~l~~~q~~l~~~~~~~~~~~LP~sSfHMTLfd~~n~~~r~~~~wP~~l~~d~~~~~~~~~~~~rl~~~~~  120 (232)
T d2fsqa1          42 LVE-GSQTESAIVSTRQRFLDMPEASQLAFTPVSSLHMTVFQGVIESRRALPYWPQTLPLDTPIDAVTDYYRDRLSTFPT  120 (232)
T ss_dssp             BCT-TSHHHHHHHHHHHHHHTSGGGGGEEECCGGGCEEEEEEEEETTCCSTTSSCTTSCTTCCHHHHHHHHHHHGGGCCC
T ss_pred             cCC-CchHHHHHHHHHHHHHhcCcccceeeCChhhhhHHHhcccccccccCCCCCccCCcccCHHHHHHHHHHHHhcCCC
Confidence            344 4467788888999888753       78899999998443321             124677777777766653  


Q ss_pred             -CceEEEeCceEEEecCCCceEEEEEeecCCC-ccHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEeecCCC
Q psy16608         87 -NRLTIKFNSIEIFCNEEKTRSFIALGANSCK-TSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDK  156 (202)
Q Consensus        87 -~~F~l~~~~~~~f~n~~~~RvF~~l~v~~~~-~~L~~L~~~i~~~l~~~g~~~~~~~~~pHiSia~~~~~~  156 (202)
                       ..|.+.+.+++      ..-+ +..++++.. ..|..+.+.+.+ +-.+++|..++ +.||||||+.....
T Consensus       121 ~~~~~~~~~~~~------~~~v-~L~p~~e~d~~~L~~~R~~l~~-l~gi~~~~h~~-Y~fHITLaY~l~~l  183 (232)
T d2fsqa1         121 LPAFNMRVTGLR------PVGM-VMKGATAEDDSIVALWRDTFAD-FFGYRHPDHDT-YEFHITLSYIVSWF  183 (232)
T ss_dssp             CCCCCEEEEEEE------TTEE-EEEESSHHHHHHHHHHHHHHHH-HHTCCCTTGGG-CCEEEECEEESSCB
T ss_pred             CcceEEEEeccc------ccEE-EEecCCHHHHHHHHHHHHHHHH-HhccCCCCCce-eEEEEEEEeccCCC
Confidence             44655553321      2223 322443322 457777777777 44555555544 99999999875443

>d1iuha_ d.61.1.2 (A:) 2'-5' RNA ligase LigT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LigT-like
superfamily: LigT-like
family: 2'-5' RNA ligase LigT
domain: 2'-5' RNA ligase LigT
species: Thermus thermophilus [TaxId: 274]

Probab=88.69  E-value=0.82  Score=32.79  Aligned_cols=59  Identities=12%  Similarity=0.154  Sum_probs=28.1

Q ss_pred             eEEEEEeecCCCccHHHHHHHHHHHHHhcCCCCCCC---CCCceEEEEeecCCCc-hhHHHHHHHHHHhh
Q psy16608        106 RSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYE---EPNFHASIAWCLQDKT-ATLKPLLTKLDNIF  171 (202)
Q Consensus       106 RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~~~~~~---~~~pHiSia~~~~~~~-~~l~~~~~~l~~~~  171 (202)
                      |+|+|+.+.+   .   +.+.+.+....+.-....+   +...||||+.. |+.+ +.+......|++..
T Consensus         2 RlFial~~p~---~---~~~~l~~~~~~l~~~~~~r~~~~~~lHiTL~fl-g~~~~~~~~~l~~~l~~~~   64 (183)
T d1iuha_           2 RLFYAVFLPE---E---VRAALVEAQTKVRPFRGWKPVPPHQLHLTLLFL-GERPEEELPDYLALGHRLA   64 (183)
T ss_dssp             EEEEEEECCH---H---HHHHHHHHHGGGTTCTTEEECCGGGCEEEEEEE-EECCGGGHHHHHHHHHHHH
T ss_pred             eEEEEEcCCH---H---HHHHHHHHHHHcccccccccCCcccCEEEEEcC-CCCCHHHHHHHHHHHHHHH
Confidence            8999987743   2   3333333333332111112   23459999964 4333 33343334444433