Psyllid ID: psy16632

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
PRTGSNSGTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQLIDSRAQLNNARR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEcccEEEEEccccccEEEEEccccccccEEEEEEEEEEccEEEEEEEEEEEccccccccccccccccccccccccEEEccccccccccEEEEEEEEccccccHHHHHHHHcccccEEEEEEccccEEEEEEccccEEEEEEcccccccEEEEEEEcccEEEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEcccccccEEEEEcccEEEEEccHcccEEEEEccccccccEEEEEEEEEcccccEEEEEEEEcccHHHcccccccccccccccccccEEEEcccccEEEccccccHHHcccccccccccHHHcccccEEEEEEccccEEEEEEcccccccEEccccccccEEEEEEEEEEEEEEEEEccccccccccc
Coil and Loop (DISEMBL)
prtgsnsgtnnlpplyfhqvhgenvrvsrdGTVAKRYESFCkgvafssrpvkinEKVYVKLLEISTnwsgvirfgftandpahlkyalpryvcpdltnkpgYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAagdvhfgingeekgvfftgvetrgplwAMFDIYGNSTAIQLIDSRAQLNNARR
Flexible Loop (DISEMBL)
prtgsnsgtnnlpplyfhqvhgenVRVSRDGTVAKRYESFckgvafssrpvkinEKVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQLIDSRAQLNNARR
Low Complexity Region (SEG)
PRTGSNSGTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQLIDSRAQLNNARR
Disordered region (IsUnstruct)
*************PLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQLID**********
Disordered Region (DISOPRED)
***************YFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQLIDS*********
Disordered Region (DISEMBL)
PRTGSNSGTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQLIDSRAQLNNARR
Disordered Region (DISPRO)
***********LPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQLIDSR********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
PRTGSNSGTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQLIDSRAQLNNARR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
Q24746	747	Protein neuralized OS=Dro	N/A	N/A	0.812	0.220	0.534	7e-60
P29503	754	Protein neuralized OS=Dro	yes	N/A	0.812	0.218	0.528	3e-59
Q0MW30	546	E3 ubiquitin-protein liga	yes	N/A	0.763	0.283	0.373	4e-32
A8MQ27	555	E3 ubiquitin-protein liga	yes	N/A	0.763	0.279	0.373	5e-32
Q923S6	574	Neuralized-like protein 1	no	N/A	0.871	0.308	0.343	4e-30
O76050	574	Neuralized-like protein 1	no	N/A	0.807	0.285	0.354	2e-29
Q96EH8	262	E3 ubiquitin-protein liga	no	N/A	0.773	0.599	0.318	1e-20
Q5M870	254	E3 ubiquitin-protein liga	no	N/A	0.773	0.618	0.320	7e-18
Q9BR09	285	Neuralized-like protein 2	no	N/A	0.881	0.628	0.297	9e-18
Q8CJC5	254	E3 ubiquitin-protein liga	no	N/A	0.773	0.618	0.320	1e-17

>sp|Q24746|NEUR_DROVI Protein neuralized OS=Drosophila virilis GN=neur PE=4 SV=1

 Score =  229 bits (585), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 135/191 (70%), Gaps = 26/191 (13%)

Query: 5   SNSGTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEI 64
           S  G NNLPPL FH VHG+N+R+SRDGT+A+R+ESFC+ + FS+RPV+INE++ VK  EI
Sbjct: 88  SCPGPNNLPPLQFHTVHGDNIRISRDGTLARRFESFCRAITFSARPVRINERICVKFAEI 147

Query: 65  STNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIV 124
           S NW+G IRFGFT+NDPA L+ ALP+Y CPDLTN+PG+W                     
Sbjct: 148 SNNWNGGIRFGFTSNDPASLEGALPKYACPDLTNRPGFW--------------------- 186

Query: 125 QPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYG 184
                AKAL E++ +++ +L+YYV  AGDV +GIN EEKGV  +G++TRG LW + DIYG
Sbjct: 187 -----AKALHEQYCEKDNILYYYVNNAGDVIYGINNEEKGVILSGIDTRGLLWTVIDIYG 241

Query: 185 NSTAIQLIDSR 195
           N T I+ +D+R
Sbjct: 242 NCTGIEFLDAR 252

Involved in neurogenesis. Interacts with other neurogenic proteins in the specification of the neuroblast versus epidermoblast cell fate.
Drosophila virilis (taxid: 7244)

>sp|P29503|NEUR_DROME Protein neuralized OS=Drosophila melanogaster GN=neur PE=1 SV=2

 Score =  228 bits (580), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 132/191 (69%), Gaps = 26/191 (13%)

Query: 5   SNSGTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEI 64
           S  G NNLPPL FH VHG+N+R+SRDGT+A+R+ESFC+ + FS+RPV+INE++ VK  EI
Sbjct: 97  SCPGPNNLPPLQFHSVHGDNIRISRDGTLARRFESFCRAITFSARPVRINERICVKFAEI 156

Query: 65  STNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIV 124
           S NW+G IRFGFT+NDP  L+  LP+Y CPDLTN+PG+WAKAL E++ +++ +       
Sbjct: 157 SNNWNGGIRFGFTSNDPVTLEGTLPKYACPDLTNRPGFWAKALHEQYCEKDNI------- 209

Query: 125 QPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYG 184
                              L+YYV  AGDV +GIN EEKGV  TG++TR  LW + DIYG
Sbjct: 210 -------------------LYYYVNGAGDVIYGINNEEKGVILTGIDTRSLLWTVIDIYG 250

Query: 185 NSTAIQLIDSR 195
           N T I+ +DSR
Sbjct: 251 NCTGIEFLDSR 261

Involved in neurogenesis. Interacts with other neurogenic proteins in the specification of the neuroblast versus epidermoblast cell fate.

Drosophila melanogaster (taxid: 7227)

>sp|Q0MW30|NEU1B_MOUSE E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus GN=Neurl1b PE=1 SV=1

 Score =  137 bits (345), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/182 (37%), Positives = 100/182 (54%), Gaps = 27/182 (14%)

Query: 14  PLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIR 73
           P +  Q  G+NVR+      A R  SFC GV F+ RP+++ E+V ++L+ +   WSG +R
Sbjct: 39  PRFHAQAKGKNVRLDGHSRRATRRNSFCNGVTFTQRPIRLYEQVRLRLVAVRPGWSGALR 98

Query: 74  FGFTANDPAHLKYA-LPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKA 132
           FGFTA+DP+ +    +P+Y CPDL                          + +PGYWAKA
Sbjct: 99  FGFTAHDPSLMSAQDIPKYACPDL--------------------------VTRPGYWAKA 132

Query: 133 LAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQLI 192
           L E  A ++TVL Y+    G V + +N  E  +F  GV   GPLWA+ D+YG +  +QL+
Sbjct: 133 LPENLALRDTVLAYWADRHGRVFYSVNDGEPVLFHCGVAVGGPLWALIDVYGITDEVQLL 192

Query: 193 DS 194
           +S
Sbjct: 193 ES 194

E3 ubiquitin-protein ligase.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A8MQ27|NEU1B_HUMAN E3 ubiquitin-protein ligase NEURL1B OS=Homo sapiens GN=NEURL1B PE=1 SV=1

 Score =  137 bits (345), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/182 (37%), Positives = 100/182 (54%), Gaps = 27/182 (14%)

Query: 14  PLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIR 73
           P +  Q  G+NVR+      A R  SFC GV F+ RP+++ E+V ++L+ +   WSG +R
Sbjct: 39  PRFHAQAKGKNVRLDGHSRRATRRNSFCNGVTFTQRPIRLYEQVRLRLVAVRPGWSGALR 98

Query: 74  FGFTANDPAHLKYA-LPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKA 132
           FGFTA+DP+ +    +P+Y CPDL                          + +PGYWAKA
Sbjct: 99  FGFTAHDPSLMSAQDIPKYACPDL--------------------------VTRPGYWAKA 132

Query: 133 LAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQLI 192
           L E  A ++TVL Y+    G V + +N  E  +F  GV   GPLWA+ D+YG +  +QL+
Sbjct: 133 LPENLALRDTVLAYWADRHGRVFYSVNDGEPVLFHCGVAVGGPLWALIDVYGITDEVQLL 192

Query: 193 DS 194
           +S
Sbjct: 193 ES 194

E3 ubiquitin-protein ligase.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q923S6|NEU1A_MOUSE Neuralized-like protein 1A OS=Mus musculus GN=Neurl PE=1 SV=1

 Score =  131 bits (329), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 102/204 (50%), Gaps = 27/204 (13%)

Query: 1   PRTGSNSGTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVK 60
           P T S  G    P L+     G  + +       KR  SFC  + FS+RPV I E+V +K
Sbjct: 50  PPTLSGGGLPATPLLFHPHTKGSQILMDLSHKAVKRQASFCNAITFSNRPVLIYEQVRLK 109

Query: 61  LLEISTNWSGVIRFGFTANDPAHLKY-ALPRYVCPDLTNKPGYWAKALAERFADQETVLF 119
           + +    WSG +R GFT+ DP+ +   +LP+Y CPDL                       
Sbjct: 110 ITKKQCCWSGALRLGFTSKDPSRIHPDSLPKYACPDL----------------------- 146

Query: 120 YYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAM 179
              + Q G+WAKAL E FA++  ++ ++V   G V + IN     +FF+GV T  PLWA+
Sbjct: 147 ---VSQSGFWAKALPEEFANEGNIIAFWVDKKGRVFYRINESAAMLFFSGVRTVDPLWAL 203

Query: 180 FDIYGNSTAIQLIDSRAQLNNARR 203
            D+YG +  +QL+DS   L +  R
Sbjct: 204 VDVYGLTRGVQLLDSELVLPDCLR 227

Can function as an E3 ubiquitin-protein ligase to activate monoubiquitination of JAG1 (in vitro).

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O76050|NEU1A_HUMAN Neuralized-like protein 1A OS=Homo sapiens GN=NEURL PE=2 SV=1

 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 98/192 (51%), Gaps = 28/192 (14%)

Query: 14  PLYFH-QVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVI 72
           PL FH    G  + +       KR  SFC  + FS+RPV I E+V +K+ +    WSG +
Sbjct: 62  PLLFHPHTKGSQILMDLSHKAVKRQASFCNAITFSNRPVLIYEQVRLKITKKQCCWSGAL 121

Query: 73  RFGFTANDPAHLKY-ALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAK 131
           R GFT+ DP+ +   +LP+Y CPDL                          + Q G+WAK
Sbjct: 122 RLGFTSKDPSRIHPDSLPKYACPDL--------------------------VSQSGFWAK 155

Query: 132 ALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQL 191
           AL E FA++  ++ ++V   G V   IN     +FF+GV T  PLWA+ D+YG +  +QL
Sbjct: 156 ALPEEFANEGNIIAFWVDKKGRVFHRINDSAVMLFFSGVRTADPLWALVDVYGLTRGVQL 215

Query: 192 IDSRAQLNNARR 203
           +DS   L +  R
Sbjct: 216 LDSELVLPDCLR 227

May function as an E3 ubiquitin-protein ligase to activate monoubiquitination of JAG1.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q96EH8|NEUL3_HUMAN E3 ubiquitin-protein ligase NEURL3 OS=Homo sapiens GN=NEURL3 PE=2 SV=2

 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 89/185 (48%), Gaps = 28/185 (15%)

Query: 15  LYFH-QVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIR 73
           L FH +  G  VR+   G +A R  +F  G+ FS RPV++ E+V +++L   + W G +R
Sbjct: 18  LRFHAEAKGAQVRLDTRGCIAHRRTTFHDGIVFSQRPVRLGERVALRVLREESGWCGGLR 77

Query: 74  FGFTANDPAHLKY-ALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKA 132
            GFT  DPA +   +LP ++CPDL  +   WA  L E  A    ++ ++V          
Sbjct: 78  VGFTRLDPACVSVPSLPPFLCPDLEEQSPTWAAVLPEGCALTGDLVRFWV---------- 127

Query: 133 LAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQLI 192
                 D+   LF  V A   +          +   GV    PLWA+ D+YG + AI+L+
Sbjct: 128 ------DRRGCLFAKVNAGCRL----------LLREGVPVGAPLWAVMDVYGTTKAIELL 171

Query: 193 DSRAQ 197
           D  A 
Sbjct: 172 DPTAS 176

E3 ubiquitin-protein ligase. Seems to utilize UBE2E1. In vitro, generates polyubiquitin chains via non-canonical lysine residues suggesting that it is not involved in tagging substrates for proteasomal degradation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5M870|NEUL3_RAT E3 ubiquitin-protein ligase NEURL3 OS=Rattus norvegicus GN=Neurl3 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 15  LYFH-QVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIR 73
           L FH    G  V +    + A+R  +F  G+ FS RPV   E+V +++L     W G +R
Sbjct: 18  LSFHGDATGAQVHLDDQRSTARRRSTFHDGIVFSQRPVWPGERVALRVLRHEDGWCGGLR 77

Query: 74  FGFTANDPAHLKYA-LPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKA 132
            GFT  DPA +  + LP +VCPDL  +   WA  L E F     V+ ++V          
Sbjct: 78  VGFTRLDPAQVAASCLPPFVCPDLEEQSPTWAALLPEGFVRAGNVVCFWV---------- 127

Query: 133 LAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQLI 192
                 ++   LF  V A   +        K V   G     PLWA+ D+YG + AI+L+
Sbjct: 128 ------NRRGWLFAKVNAGRPLLL-----RKDVLVQG----APLWAVMDVYGTTKAIELL 172

Query: 193 DSRA 196
           D +A
Sbjct: 173 DPKA 176

E3 ubiquitin-protein ligase. Seems to utilize UBE2E1. In vitro, generates polyubiquitin chains via non-canonical lysine residues suggesting that it is not involved in tagging substrates for proteasomal degradation.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9BR09|NEUL2_HUMAN Neuralized-like protein 2 OS=Homo sapiens GN=NEURL2 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 94/222 (42%), Gaps = 43/222 (19%)

Query: 13  PPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVI 72
           PP  FH+VHG N+RV   GT A R ESF  GV FS  P+   +   V++ E    W G +
Sbjct: 22  PPTRFHRVHGANIRVDPSGTRATRVESFAHGVCFSREPLAPGQVFLVEIEEKELGWCGHL 81

Query: 73  RFGFTANDPAHLKYALPRYVCPDLTNKPGYW------------------AKALAERFADQ 114
           R G TA DPA L   +P +  PDL N    W                  A+A A      
Sbjct: 82  RLGLTALDPASLA-PVPEFSLPDLVNLGHTWVFAITRHHNRVPREGRPEAEAAAPSRPPT 140

Query: 115 ETVLFYYVIVQ-------------PGYWAKALAERFA----------DQETVLFY-YVTA 150
             V  Y  I Q             PG ++  L + +            +  VLF      
Sbjct: 141 LLVEPYLRIEQFRIPRDRLVGRSRPGLYSHLLDQLYELNVLPPTARRSRLGVLFCPRPDG 200

Query: 151 AGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQLI 192
             D+H  INGE+ G    G+    PL+A+ D++ ++ +++L+
Sbjct: 201 TADMHIIINGEDMGPSARGLPAAQPLYAVVDVFASTKSVRLV 242

Plays an important role in the process of myofiber differentiation and maturation. Probable substrate-recognition component of a SCF-like ECS (Elongin BC-CUL2/5-SOCS-box protein) E3 ubiquitin-protein ligase complex, which mediates the ubiquitination of proteins. Probably contributes to catalysis through recognition and positioning of the substrate and the ubiquitin-conjugating enzyme. During myogenesis, controls the ubiquitination and degradation of the specific pool of CTNNB1/beta-catenin located at the sarcolemma.

Homo sapiens (taxid: 9606)

>sp|Q8CJC5|NEUL3_MOUSE E3 ubiquitin-protein ligase NEURL3 OS=Mus musculus GN=Neurl3 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 15  LYFH-QVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIR 73
           L FH    G  V +    + A+R  +F  G+ FS RPV   E+V +++L     W G +R
Sbjct: 18  LSFHGNATGAQVHLDDQRSTARRRSTFHDGIVFSQRPVWPGERVALRVLRHEEGWCGGLR 77

Query: 74  FGFTANDPAHLKYA-LPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKA 132
            GFT  DPA +  + LP +VCPDL  +   WA  L E F     V+ ++V          
Sbjct: 78  VGFTRLDPAQVAASCLPPFVCPDLEEQSPTWAALLPEGFVRAGNVVCFWV---------- 127

Query: 133 LAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQLI 192
                 ++   LF  V A   +        K V   G     PLWA+ D+YG + AI+L+
Sbjct: 128 ------NRRGWLFAKVNAGRPLLL-----RKDVLVQG----APLWAVMDVYGTTKAIELL 172

Query: 193 DSRA 196
           D +A
Sbjct: 173 DPKA 176

E3 ubiquitin-protein ligase. Seems to utilize UBE2E1. In vitro, generates polyubiquitin chains via non-canonical lysine residues suggesting that it is not involved in tagging substrates for proteasomal degradation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
91078084	642	PREDICTED: similar to neuralized [Tribol	0.866	0.274	0.665	2e-76
242021537	669	neuralized, putative [Pediculus humanus	0.862	0.261	0.635	2e-72
340726159	718	PREDICTED: protein neuralized-like [Bomb	0.866	0.245	0.627	3e-72
350405207	719	PREDICTED: protein neuralized-like [Bomb	0.866	0.244	0.627	3e-72
332022138	764	Protein neuralized [Acromyrmex echinatio	0.866	0.230	0.637	4e-72
383862507	717	PREDICTED: protein neuralized-like [Mega	0.866	0.245	0.632	5e-72
322785139	625	hypothetical protein SINV_14225 [Solenop	0.866	0.281	0.637	8e-72
328778267	721	PREDICTED: protein neuralized [Apis mell	0.866	0.244	0.637	1e-71
307214255	645	Protein neuralized [Harpegnathos saltato	0.866	0.272	0.632	3e-71
345484189	729	PREDICTED: LOW QUALITY PROTEIN: protein	0.866	0.241	0.632	4e-71

>gi|91078084|ref|XP_972157.1| PREDICTED: similar to neuralized [Tribolium castaneum] gi|270001399|gb|EEZ97846.1| hypothetical protein TcasGA2_TC000216 [Tribolium castaneum]

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 135/203 (66%), Positives = 155/203 (76%), Gaps = 27/203 (13%)

Query: 2   RTGSNSG-TNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVK 60
           R+GSN G TNNLPPL FH VHGEN+R+SRDGT+A+R ESFCKG+AFSSRPVK+NEK+ +K
Sbjct: 44  RSGSNGGGTNNLPPLLFHNVHGENIRISRDGTIARRVESFCKGIAFSSRPVKVNEKICIK 103

Query: 61  LLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFY 120
            LEIS NWSGVIRFGFT NDP+ L+Y LP+Y CPDLTNKPGYWAKAL ERF  Q TVL  
Sbjct: 104 FLEISNNWSGVIRFGFTFNDPSSLRYGLPKYACPDLTNKPGYWAKALPERFCSQNTVL-- 161

Query: 121 YVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMF 180
                                   FYYVT+ GDVHFGINGEEKG+FF+ VETRGPLWA+ 
Sbjct: 162 ------------------------FYYVTSTGDVHFGINGEEKGIFFSSVETRGPLWALI 197

Query: 181 DIYGNSTAIQLIDSRAQLNNARR 203
           D+YGNSTAI+ +D R QLNN+RR
Sbjct: 198 DVYGNSTAIEFVDIRHQLNNSRR 220

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021537|ref|XP_002431201.1| neuralized, putative [Pediculus humanus corporis] gi|212516450|gb|EEB18463.1| neuralized, putative [Pediculus humanus corporis]

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/203 (63%), Positives = 160/203 (78%), Gaps = 28/203 (13%)

Query: 2   RTGSNSGTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKL 61
           R+GS SGTNNLPPL FHQVHG+N+R+S D +VA+R ESFC+GVAFSSRPVK+NEKV++K 
Sbjct: 10  RSGS-SGTNNLPPLLFHQVHGDNIRLSGDNSVARRVESFCRGVAFSSRPVKVNEKVFIKF 68

Query: 62  LEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYY 121
           LE+S NWSGVIRFGFT+NDP++L+Y LP+Y CPDLT+KPGYWAKALAERFA+++TV    
Sbjct: 69  LEVSNNWSGVIRFGFTSNDPSNLRYCLPKYACPDLTSKPGYWAKALAERFAERDTV---- 124

Query: 122 VIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFD 181
                                 L+YYVTA GDV+FGINGEEKG+F +GVETRGP+WA+FD
Sbjct: 125 ----------------------LYYYVTAMGDVYFGINGEEKGIFLSGVETRGPVWALFD 162

Query: 182 IYGNSTAIQLIDSRAQ-LNNARR 203
           +YGNST I+L+D R   +NN+ R
Sbjct: 163 VYGNSTGIELVDQRGSPMNNSIR 185

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726159|ref|XP_003401429.1| PREDICTED: protein neuralized-like [Bombus terrestris]

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 128/204 (62%), Positives = 157/204 (76%), Gaps = 28/204 (13%)

Query: 1   PRTGSNSGTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVK 60
           PR+ S++GTNNLPPL FHQVHGEN+R+   GT+A+RYESFC+G+ FS+RPV++ EK+ VK
Sbjct: 100 PRS-SSAGTNNLPPLTFHQVHGENIRLCNGGTIARRYESFCRGITFSARPVRVGEKICVK 158

Query: 61  LLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFY 120
            LEIS NWSGVIRFGFT+NDP +L+  LPRY CPDLTNKPGYWAKA+AERFA+++TVL  
Sbjct: 159 FLEISDNWSGVIRFGFTSNDPINLRNGLPRYACPDLTNKPGYWAKAMAERFAERDTVL-- 216

Query: 121 YVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMF 180
                                   FYYVT+AGDVHFG+NGEEKGVFF+G+ETRGPLWA+ 
Sbjct: 217 ------------------------FYYVTSAGDVHFGVNGEEKGVFFSGIETRGPLWAII 252

Query: 181 DIYGNSTAIQLID-SRAQLNNARR 203
           D+YGNSTAI+ +D +R   NN RR
Sbjct: 253 DVYGNSTAIEFVDPNRQHFNNIRR 276

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405207|ref|XP_003487359.1| PREDICTED: protein neuralized-like [Bombus impatiens]

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 128/204 (62%), Positives = 157/204 (76%), Gaps = 28/204 (13%)

Query: 1   PRTGSNSGTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVK 60
           PR+ S++GTNNLPPL FHQVHGEN+R+   GT+A+RYESFC+G+ FS+RPV++ EK+ VK
Sbjct: 100 PRS-SSAGTNNLPPLTFHQVHGENIRLCNGGTIARRYESFCRGITFSARPVRVGEKICVK 158

Query: 61  LLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFY 120
            LEIS NWSGVIRFGFT+NDP +L+  LPRY CPDLTNKPGYWAKA+AERFA+++TVL  
Sbjct: 159 FLEISDNWSGVIRFGFTSNDPINLRNGLPRYACPDLTNKPGYWAKAMAERFAERDTVL-- 216

Query: 121 YVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMF 180
                                   FYYVT+AGDVHFG+NGEEKGVFF+G+ETRGPLWA+ 
Sbjct: 217 ------------------------FYYVTSAGDVHFGVNGEEKGVFFSGIETRGPLWAII 252

Query: 181 DIYGNSTAIQLID-SRAQLNNARR 203
           D+YGNSTAI+ +D +R   NN RR
Sbjct: 253 DVYGNSTAIEFVDPNRQHFNNIRR 276

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022138|gb|EGI62460.1| Protein neuralized [Acromyrmex echinatior]

 Score =  276 bits (705), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 130/204 (63%), Positives = 156/204 (76%), Gaps = 28/204 (13%)

Query: 1   PRTGSNSGTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVK 60
           PR+ SN+GTNNLPPL FH VHG+N+R+   GT+A+R+ESFCKGV FS+RPV++ EKV VK
Sbjct: 147 PRS-SNAGTNNLPPLTFHHVHGDNIRLCNGGTIARRHESFCKGVTFSARPVRVGEKVCVK 205

Query: 61  LLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFY 120
            LEIS NWSGVIRFGFT+NDP +L+  LPRY CPDLTNKPGYWAKALAERFA+++TVL  
Sbjct: 206 FLEISDNWSGVIRFGFTSNDPINLRSGLPRYACPDLTNKPGYWAKALAERFAERDTVL-- 263

Query: 121 YVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMF 180
                                   FYYVT+AGDVHFG+NGEEKG+FF+GVETRGPLWA+ 
Sbjct: 264 ------------------------FYYVTSAGDVHFGVNGEEKGLFFSGVETRGPLWAII 299

Query: 181 DIYGNSTAIQLID-SRAQLNNARR 203
           D+YGNSTAI+ +D +R   NN RR
Sbjct: 300 DVYGNSTAIEFVDPNRQHFNNIRR 323

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862507|ref|XP_003706725.1| PREDICTED: protein neuralized-like [Megachile rotundata]

 Score =  276 bits (705), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 129/204 (63%), Positives = 156/204 (76%), Gaps = 28/204 (13%)

Query: 1   PRTGSNSGTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVK 60
           PR+ S++GTNNLPPL FHQVHGEN+R+   GT+A+RYESFC+G+ FS+RPV++ EKV VK
Sbjct: 103 PRS-SSAGTNNLPPLTFHQVHGENIRLCNGGTIARRYESFCRGITFSARPVRVGEKVCVK 161

Query: 61  LLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFY 120
            LEIS NWSGVIRFGFT+NDP +L+  LPRY CPDLTNKPGYWAKA+AER A+++TVL  
Sbjct: 162 FLEISNNWSGVIRFGFTSNDPINLRNGLPRYACPDLTNKPGYWAKAMAERLAERDTVL-- 219

Query: 121 YVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMF 180
                                   FYYVT+AGDVHFG+NGEEKGVFF+GVETRGPLWA+ 
Sbjct: 220 ------------------------FYYVTSAGDVHFGVNGEEKGVFFSGVETRGPLWAII 255

Query: 181 DIYGNSTAIQLID-SRAQLNNARR 203
           D+YGNSTAI+ +D +R   NN RR
Sbjct: 256 DVYGNSTAIEFVDPNRQHFNNIRR 279

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785139|gb|EFZ11863.1| hypothetical protein SINV_14225 [Solenopsis invicta]

 Score =  275 bits (703), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 130/204 (63%), Positives = 156/204 (76%), Gaps = 28/204 (13%)

Query: 1   PRTGSNSGTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVK 60
           PR+ SN+GTNNLPPL FH VHG+N+R+   GT+A+R+ESFCKGV FS+RPV++ EKV VK
Sbjct: 2   PRS-SNTGTNNLPPLTFHHVHGDNIRLCNGGTIARRHESFCKGVTFSARPVRVGEKVCVK 60

Query: 61  LLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFY 120
            LEIS NWSGVIRFGFT+NDP +L+  LPRY CPDLTNKPGYWAKALAERFA+++TVL  
Sbjct: 61  FLEISDNWSGVIRFGFTSNDPINLRSGLPRYACPDLTNKPGYWAKALAERFAERDTVL-- 118

Query: 121 YVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMF 180
                                   FYYVT+AGDVHFG+NGEEKG+FF+GVETRGPLWA+ 
Sbjct: 119 ------------------------FYYVTSAGDVHFGVNGEEKGLFFSGVETRGPLWAII 154

Query: 181 DIYGNSTAIQLIDS-RAQLNNARR 203
           D+YGNSTAI+ +D+ R   NN RR
Sbjct: 155 DVYGNSTAIEFVDANRQHFNNIRR 178

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778267|ref|XP_001120035.2| PREDICTED: protein neuralized [Apis mellifera]

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/204 (63%), Positives = 156/204 (76%), Gaps = 28/204 (13%)

Query: 1   PRTGSNSGTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVK 60
           PR+ S++GTNNLPPL FHQVHGEN+R+   GT+A+RYESFC+G+ FS+R V++ EKV VK
Sbjct: 104 PRS-SSAGTNNLPPLTFHQVHGENIRLCNGGTIARRYESFCRGITFSARAVRVGEKVCVK 162

Query: 61  LLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFY 120
            LEIS NWSGVIRFGFT+NDP +L+  LPRY CPDLTNKPGYWAKA+AERFA+++TVL  
Sbjct: 163 FLEISDNWSGVIRFGFTSNDPINLRNGLPRYACPDLTNKPGYWAKAMAERFAERDTVL-- 220

Query: 121 YVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMF 180
                                   FYYVT+AGDVHFGINGEEKGVFF+GVETRGPLWA+ 
Sbjct: 221 ------------------------FYYVTSAGDVHFGINGEEKGVFFSGVETRGPLWAII 256

Query: 181 DIYGNSTAIQLID-SRAQLNNARR 203
           D+YGNSTAI+ +D +R   NN RR
Sbjct: 257 DVYGNSTAIEFVDPNRQHFNNIRR 280

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214255|gb|EFN89351.1| Protein neuralized [Harpegnathos saltator]

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 129/204 (63%), Positives = 156/204 (76%), Gaps = 28/204 (13%)

Query: 1   PRTGSNSGTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVK 60
           PR+ S++GTNNLPPL FH VHG+N+R+   GT+A+R+ESFCKGV FS+RPV++ EKV VK
Sbjct: 1   PRS-SSAGTNNLPPLTFHHVHGDNIRLCNGGTIARRHESFCKGVTFSARPVRVGEKVCVK 59

Query: 61  LLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFY 120
            LEIS NWSGVIRFGFT+NDP +L+  LPRY CPDLTNKPGYWAKALAERFA+++TVL  
Sbjct: 60  FLEISDNWSGVIRFGFTSNDPINLRSGLPRYACPDLTNKPGYWAKALAERFAERDTVL-- 117

Query: 121 YVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMF 180
                                   FYYVT+AGDVHFG+NGEEKG+FF+GVETRGPLWA+ 
Sbjct: 118 ------------------------FYYVTSAGDVHFGVNGEEKGLFFSGVETRGPLWAII 153

Query: 181 DIYGNSTAIQLID-SRAQLNNARR 203
           D+YGNSTAI+ +D +R   NN RR
Sbjct: 154 DVYGNSTAIEFVDPNRQHFNNIRR 177

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345484189|ref|XP_001601207.2| PREDICTED: LOW QUALITY PROTEIN: protein neuralized-like [Nasonia vitripennis]

 Score =  272 bits (696), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 129/204 (63%), Positives = 154/204 (75%), Gaps = 28/204 (13%)

Query: 1   PRTGSNSGTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVK 60
           PR+ SN+GTNNLPPL FHQVHG+N+ +    T+A+R+ESFCKGV FS+RPV++ EKV VK
Sbjct: 122 PRS-SNAGTNNLPPLTFHQVHGDNISLCNGNTIARRHESFCKGVTFSARPVRVGEKVCVK 180

Query: 61  LLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFY 120
            LEIS NWSGVIRFGFT+NDP +L+  LPRY CPDLTNKPGYWAKALAERFA+++TVL  
Sbjct: 181 FLEISDNWSGVIRFGFTSNDPVNLRNGLPRYACPDLTNKPGYWAKALAERFAERDTVL-- 238

Query: 121 YVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMF 180
                                   FYYVT+AGDVHFG+NGEEKGVFF+GVETR PLWA+ 
Sbjct: 239 ------------------------FYYVTSAGDVHFGVNGEEKGVFFSGVETRSPLWAII 274

Query: 181 DIYGNSTAIQLID-SRAQLNNARR 203
           D+YGNSTAI+ +D +R   NN RR
Sbjct: 275 DVYGNSTAIEFVDPNRQHFNNVRR 298

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
UNIPROTKB|Q24746	747	neur "Protein neuralized" [Dro	0.566	0.153	0.643	2.3e-47
FB|FBgn0002932	754	neur "neuralized" [Drosophila	0.566	0.152	0.626	2e-46
WB|WBGene00017342	617	F10D7.5 [Caenorhabditis elegan	0.536	0.176	0.536	1.1e-35
ZFIN|ZDB-GENE-050522-102	560	zgc:110426 "zgc:110426" [Danio	0.517	0.187	0.476	8e-29
MGI|MGI:1334263	574	Neurl1a "neuralized homolog 1A	0.600	0.212	0.382	3.2e-26
UNIPROTKB|O76050	574	NEURL "Neuralized-like protein	0.561	0.198	0.398	3.3e-26
UNIPROTKB|F1MSJ5	574	NEURL "Uncharacterized protein	0.536	0.189	0.405	4.3e-26
UNIPROTKB|F1S837	576	NEURL "Uncharacterized protein	0.536	0.189	0.405	7e-26
UNIPROTKB|F1P1U7	555	NEURL "Uncharacterized protein	0.561	0.205	0.398	1.4e-25
UNIPROTKB|F1NBK9	506	F1NBK9 "Uncharacterized protei	0.536	0.215	0.477	3.6e-25

UNIPROTKB|Q24746 neur "Protein neuralized" [Drosophila virilis (taxid:7244)]

 Score = 451 (163.8 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
 Identities = 74/115 (64%), Positives = 99/115 (86%)

Query:     8 GTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTN 67
             G NNLPPL FH VHG+N+R+SRDGT+A+R+ESFC+ + FS+RPV+INE++ VK  EIS N
Sbjct:    91 GPNNLPPLQFHTVHGDNIRISRDGTLARRFESFCRAITFSARPVRINERICVKFAEISNN 150

Query:    68 WSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYV 122
             W+G IRFGFT+NDPA L+ ALP+Y CPDLTN+PG+WAKAL E++ +++ +L+YYV
Sbjct:   151 WNGGIRFGFTSNDPASLEGALPKYACPDLTNRPGFWAKALHEQYCEKDNILYYYV 205

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0007399 "nervous system development" evidence=ISS

GO:0007422 "peripheral nervous system development" evidence=ISS

GO:0007423 "sensory organ development" evidence=ISS

GO:0007498 "mesoderm development" evidence=ISS

GO:0016360 "sensory organ precursor cell fate determination" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

FB|FBgn0002932 neur "neuralized" [Drosophila melanogaster (taxid:7227)]

 Score = 443 (161.0 bits), Expect = 2.0e-46, Sum P(2) = 2.0e-46
 Identities = 72/115 (62%), Positives = 97/115 (84%)

Query:     8 GTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTN 67
             G NNLPPL FH VHG+N+R+SRDGT+A+R+ESFC+ + FS+RPV+INE++ VK  EIS N
Sbjct:   100 GPNNLPPLQFHSVHGDNIRISRDGTLARRFESFCRAITFSARPVRINERICVKFAEISNN 159

Query:    68 WSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYV 122
             W+G IRFGFT+NDP  L+  LP+Y CPDLTN+PG+WAKAL E++ +++ +L+YYV
Sbjct:   160 WNGGIRFGFTSNDPVTLEGTLPKYACPDLTNRPGFWAKALHEQYCEKDNILYYYV 214

GO:0007398 "ectoderm development" evidence=TAS

GO:0007498 "mesoderm development" evidence=IMP

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=NAS

GO:0030707 "ovarian follicle cell development" evidence=TAS

GO:0007399 "nervous system development" evidence=IMP;NAS

GO:0048749 "compound eye development" evidence=IMP;TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0016360 "sensory organ precursor cell fate determination" evidence=IMP

GO:0007423 "sensory organ development" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0045314 "regulation of compound eye photoreceptor development" evidence=IMP

GO:0046532 "regulation of photoreceptor cell differentiation" evidence=IMP

GO:0045747 "positive regulation of Notch signaling pathway" evidence=TAS

GO:0008356 "asymmetric cell division" evidence=TAS

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0008593 "regulation of Notch signaling pathway" evidence=IMP

GO:0008104 "protein localization" evidence=IMP

GO:0042048 "olfactory behavior" evidence=IMP

GO:0005768 "endosome" evidence=IDA

GO:0030718 "germ-line stem cell maintenance" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

WB|WBGene00017342 F10D7.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 338 (124.0 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
 Identities = 59/110 (53%), Positives = 83/110 (75%)

Query:    14 PLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIR 73
             PL FH +HG NV + ++G +AKR ESFCKG+AFS+RP++I+E V ++L E+ TNWSGV+R
Sbjct:    38 PLQFHCIHGSNVVILKNGRLAKRRESFCKGLAFSNRPIEIDENVCLRLCEVGTNWSGVLR 97

Query:    74 FGFTANDPAHLK-YALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYV 122
             FG T +DP   +   +P + CPDLT K GYWAKAL ER++++  +L +YV
Sbjct:    98 FGVTNDDPEMYRDIPVPTFACPDLTTKDGYWAKALPERYSNEGNILHFYV 147

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

ZFIN|ZDB-GENE-050522-102 zgc:110426 "zgc:110426" [Danio rerio (taxid:7955)]

 Score = 273 (101.2 bits), Expect = 8.0e-29, Sum P(2) = 8.0e-29
 Identities = 51/107 (47%), Positives = 68/107 (63%)

Query:    17 FH-QVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFG 75
             FH    G+N+R+      A R  SFC G+ FS RPV++ EKV ++L  + T WSG +RFG
Sbjct:    48 FHPHAKGKNIRLDAHLRRATRKNSFCNGITFSQRPVRLYEKVRLRLSGVHTGWSGALRFG 107

Query:    76 FTANDPAHLKYA-LPRYVCPDLTNKPGYWAKALAERFADQETVLFYY 121
             FT  DP  L    +P+Y CPDL  +PGYWAKAL ER A ++ VL ++
Sbjct:   108 FTTLDPGELSLTDIPKYACPDLVTRPGYWAKALPERLAMRDNVLAFW 154

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:1334263 Neurl1a "neuralized homolog 1A (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 247 (92.0 bits), Expect = 3.2e-26, Sum P(2) = 3.2e-26
 Identities = 47/123 (38%), Positives = 71/123 (57%)

Query:     1 PRTGSNSGTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVK 60
             P T S  G    P L+     G  + +       KR  SFC  + FS+RPV I E+V +K
Sbjct:    50 PPTLSGGGLPATPLLFHPHTKGSQILMDLSHKAVKRQASFCNAITFSNRPVLIYEQVRLK 109

Query:    61 LLEISTNWSGVIRFGFTANDPAHLKY-ALPRYVCPDLTNKPGYWAKALAERFADQETVLF 119
             + +    WSG +R GFT+ DP+ +   +LP+Y CPDL ++ G+WAKAL E FA++  ++ 
Sbjct:   110 ITKKQCCWSGALRLGFTSKDPSRIHPDSLPKYACPDLVSQSGFWAKALPEEFANEGNIIA 169

Query:   120 YYV 122
             ++V
Sbjct:   170 FWV 172

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0007288 "sperm axoneme assembly" evidence=IMP

GO:0007595 "lactation" evidence=IMP

GO:0008152 "metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009605 "response to external stimulus" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0030317 "sperm motility" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|O76050 NEURL "Neuralized-like protein 1A" [Homo sapiens (taxid:9606)]

 Score = 245 (91.3 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
 Identities = 47/118 (39%), Positives = 71/118 (60%)

Query:     9 TNNLP--PLYFH-QVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEIS 65
             +  LP  PL FH    G  + +       KR  SFC  + FS+RPV I E+V +K+ +  
Sbjct:    55 SGGLPATPLLFHPHTKGSQILMDLSHKAVKRQASFCNAITFSNRPVLIYEQVRLKITKKQ 114

Query:    66 TNWSGVIRFGFTANDPAHLKY-ALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYV 122
               WSG +R GFT+ DP+ +   +LP+Y CPDL ++ G+WAKAL E FA++  ++ ++V
Sbjct:   115 CCWSGALRLGFTSKDPSRIHPDSLPKYACPDLVSQSGFWAKALPEEFANEGNIIAFWV 172

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0007288 "sperm axoneme assembly" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007519 "skeletal muscle tissue development" evidence=IEA

GO:0007595 "lactation" evidence=IEA

GO:0009605 "response to external stimulus" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0007399 "nervous system development" evidence=TAS

UNIPROTKB|F1MSJ5 NEURL "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 244 (91.0 bits), Expect = 4.3e-26, Sum P(2) = 4.3e-26
 Identities = 45/111 (40%), Positives = 68/111 (61%)

Query:    14 PLYFH-QVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVI 72
             PL FH    G  + +       KR  SFC  + FS+RPV I E+V +K+ +    WSG +
Sbjct:    62 PLLFHPHTKGSQILMDLSHKAVKRQASFCNAITFSNRPVLIYEQVRLKITKKQCCWSGAL 121

Query:    73 RFGFTANDPAHLKY-ALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYV 122
             R GFT+ DP+ +   +LP+Y CPDL ++ G+WAKAL E FA++  ++ ++V
Sbjct:   122 RLGFTSKDPSRIHPDSLPKYACPDLVSQSGFWAKALPEEFANEGNIIAFWV 172

GO:0030317 "sperm motility" evidence=IEA

GO:0009605 "response to external stimulus" evidence=IEA

GO:0007595 "lactation" evidence=IEA

GO:0007288 "sperm axoneme assembly" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1S837 NEURL "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 244 (91.0 bits), Expect = 7.0e-26, Sum P(2) = 7.0e-26
 Identities = 45/111 (40%), Positives = 68/111 (61%)

Query:    14 PLYFH-QVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVI 72
             PL FH    G  + +       KR  SFC  + FS+RPV I E+V +K+ +    WSG +
Sbjct:    62 PLLFHPHTKGSQILMDLSHKAVKRQASFCNAITFSNRPVLIYEQVRLKITKKQCCWSGAL 121

Query:    73 RFGFTANDPAHLKY-ALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYV 122
             R GFT+ DP+ +   +LP+Y CPDL ++ G+WAKAL E FA++  ++ ++V
Sbjct:   122 RLGFTSKDPSRIHPDSLPKYACPDLVSQSGFWAKALPEEFANEGNIIAFWV 172

GO:0030317 "sperm motility" evidence=IEA

GO:0009605 "response to external stimulus" evidence=IEA

GO:0007595 "lactation" evidence=IEA

GO:0007288 "sperm axoneme assembly" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1P1U7 NEURL "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 249 (92.7 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
 Identities = 47/118 (39%), Positives = 73/118 (61%)

Query:     8 GTNNLPPLYFHQVHGENVRVSRDGT--VAKRYESFCKGVAFSSRPVKINEKVYVKLLEIS 65
             G  ++ PL FH  H +  ++  D T    KR  SFC  + FS+RP+ I E+V +K+ +  
Sbjct:    39 GALSITPLLFHP-HTKGSQIVMDTTQKAVKRQASFCNAITFSNRPIVIYEQVRLKITKKQ 97

Query:    66 TNWSGVIRFGFTANDPAHLKY-ALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYV 122
               WSG +R GFT+ DP+ +    LP+Y CPDL ++ G+WAKAL E FA++  ++ ++V
Sbjct:    98 CCWSGALRLGFTSKDPSRINPDTLPKYACPDLVSQSGFWAKALPEEFANEGNIIAFWV 155

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007288 "sperm axoneme assembly" evidence=IEA

GO:0007595 "lactation" evidence=IEA

GO:0009605 "response to external stimulus" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

UNIPROTKB|F1NBK9 F1NBK9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 291 (107.5 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 53/111 (47%), Positives = 74/111 (66%)

Query:    14 PLYFHQ-VHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVI 72
             PL FH    G+NVR+      A R  SFC G+ F++RP+ + EKV +KL+ +   WSG +
Sbjct:     1 PLRFHSHAKGKNVRLDTHSRRATRRNSFCNGITFTNRPIHLYEKVRLKLVAVHHGWSGAL 60

Query:    73 RFGFTANDPAHLKYA-LPRYVCPDLTNKPGYWAKALAERFADQETVLFYYV 122
             RFGFT +DP+ +    +P+Y CPDL  +PGYWAKAL ERFA ++ VL ++V
Sbjct:    61 RFGFTTHDPSQMSSDDIPKYACPDLVTRPGYWAKALPERFAVRDNVLAFWV 111

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P29503	NEUR_DROME	No assigned EC number	0.5287	0.8128	0.2188	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	203
smart00588	123	smart00588, NEUZ, domain in neuralized proteins	1e-40
pfam07177	68	pfam07177, Neuralized, Neuralized	8e-32
cd12887	161	cd12887, SPRY_NHR_like, SPRY domain in neuralized	6e-25

>gnl|CDD|128856 smart00588, NEUZ, domain in neuralized proteins

 Score =  133 bits (338), Expect = 1e-40
 Identities = 59/148 (39%), Positives = 75/148 (50%), Gaps = 28/148 (18%)

Query: 14  PLYFHQVHGENVRVSRDGTVAKRYES-FCKGVAFSSRPVKINEKVYVKLLEISTNWSGVI 72
           PL FH  HG N+R+S  G VA+R  S FC  + FS+RP++INE   VK+ ++   WSG +
Sbjct: 2   PLRFHHRHGSNIRLSDSGRVARRSASDFCNALVFSARPLRINELFEVKIEKVVRKWSGAL 61

Query: 73  RFGFTANDPAHLKYA-LPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAK 131
           RFG T  DPA L+ A LP   CPDL                              G+WAK
Sbjct: 62  RFGVTTCDPATLRPASLPTNACPDLV--------------------------DMSGFWAK 95

Query: 132 ALAERFADQETVLFYYVTAAGDVHFGIN 159
           AL E  A+Q  +L   V A G+V   IN
Sbjct: 96  ALGEGLAEQGGILGLDVLAEGEVVGVIN 123

Length = 123

>gnl|CDD|115807 pfam07177, Neuralized, Neuralized

 Score =  109 bits (275), Expect = 8e-32
 Identities = 40/68 (58%), Positives = 52/68 (76%)

Query: 14 PLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIR 73
          PL FH  HG N+R+S DGT+A+R ESFC  + FS+RPV+I E+V VK+L+I  NWSG +R
Sbjct: 1  PLQFHPTHGSNIRLSDDGTLARRRESFCDAITFSARPVRIGERVCVKVLKIENNWSGGLR 60

Query: 74 FGFTANDP 81
           GFT+ DP
Sbjct: 61 LGFTSLDP 68

This family contains a conserved region approximately 60 residues long within eukaryotic neuralized and neuralized-like proteins. Neuralized belongs to a group of ubiquitin ligases and is required in a subset of Notch pathway-mediated cell fate decisions during development of the Drosophila nervous system. Some family members contain multiple copies of this region. Length = 68

>gnl|CDD|240467 cd12887, SPRY_NHR_like, SPRY domain in neuralized homology repeat

 Score = 94.9 bits (237), Expect = 6e-25
 Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 24/181 (13%)

Query: 16  YFHQVHGENVRVSRDGTVAKR-YESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRF 74
            FH+ HG+NVR+S DG  A R  +SF  G+ FSSRP++  E   V++ ++   WSG +  
Sbjct: 1   RFHENHGKNVRLSNDGRTATRVKDSFNNGIVFSSRPLRPGELFEVRIDKLEDRWSGSLEI 60

Query: 75  GFTANDPAHLKYALPRYVCPDLTN-KPGYWAKALAERFADQETVLFYYVIVQPGYWAK-- 131
           G T  DP  L   LP    P  T+ K G W   L+       +V      V+  Y     
Sbjct: 61  GVTTLDPESLD--LP----PSATDLKSGTW--ILSGS-----SVFKNGNKVRENYGPDLD 107

Query: 132 ALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQL 191
            L     D+  V+    T  G +HF INGE++GV  + +    P++A+ D+YG    + +
Sbjct: 108 RLRVG--DRVGVM---RTPDGSLHFYINGEDQGVAASNIPQ--PVYAVVDLYGQCEQVSI 160

Query: 192 I 192
           +
Sbjct: 161 V 161

This family contains the neuralized homology repeat 1 (NHR1) domain similar to the SPRY domain (known to mediate specific protein-protein interactions) at the C-terminus of a conserved region within eukaryotic neuralized and neuralized-like proteins. In Drosophila, the neuralized protein (Neur) belongs to a group of ubiquitin ligases and is required in a subset of Notch pathway-mediated cell fate decisions during development of the nervous system. Neur binds to the Notch receptor ligand Delta through its first NHR1 domain and mediates its ubiquitination for endocytosis. Multiple copies of this region are found in some members of the family. Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
smart00588	123	NEUZ domain in neuralized proteins.	100.0
KOG4625|consensus	595		100.0
KOG4625|consensus	595		99.96
PF07177	69	Neuralized: Neuralized; InterPro: IPR006573 NEUZ i	99.96
PF00622	124	SPRY: SPRY domain; InterPro: IPR003877 The SPRY do	97.91
smart00449	122	SPRY Domain in SPla and the RYanodine Receptor. Do	97.84
KOG4030|consensus	197		96.62
KOG2626|consensus	544		94.77
KOG3953|consensus	242		94.75
PF01835	99	A2M_N: MG2 domain; InterPro: IPR002890 The protein	83.21

>smart00588 NEUZ domain in neuralized proteins

Probab=100.00  E-value=7.8e-39  Score=247.43  Aligned_cols=121  Identities=48%  Similarity=0.829  Sum_probs=114.3

Q ss_pred             CCcccccCCCCCEEEecCCeEEEecCc-CCceEEEeCCcCCCCCEEEEEEEeecCCccceeEEeeeeeCCCCCCC-CCCC
Q psy16632         13 PPLYFHQVHGENVRVSRDGTVAKRYES-FCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAHLKY-ALPR   90 (203)
Q Consensus        13 ~~l~FH~~~G~nI~Ls~~~~~A~R~~s-f~~giVFS~rPL~~gE~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~-~lP~   90 (203)
                      .+|+||+.||+||+|++++++|+|..+ |++|||||+|||++||+|+|+|++.+.+|+|+|++|||+|||+.+++ +||.
T Consensus         1 ~~l~FH~~~G~ni~l~~~~~~A~R~~~~f~~givFS~rPl~~~E~~~v~i~~~~~~w~G~l~~G~Ts~dP~~l~~~~lp~   80 (123)
T smart00588        1 GPLRFHHRHGSNIRLSDSGRVARRSASDFCNALVFSARPLRINELFEVKIEKVVRKWSGALRFGVTTCDPATLRPASLPT   80 (123)
T ss_pred             CCcccccccCCCeEECCCCcEEEcccCCcCceEEecCCCCcCCCEEEEEEEEecCCccCceEEEEecCCcccccCccCcc
Confidence            379999999999999999999999876 99999999999999999999999999999999999999999999987 8998


Q ss_pred             CCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCchhhhhhccccCCccEEEEEECCCceEEEEEc
Q psy16632         91 YVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGIN  159 (203)
Q Consensus        91 ~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~~~G~l~~~vN  159 (203)
                      +++|||.++++||+++..+.++                          ..|+++.|+++.+|++++.||
T Consensus        81 ~~~~dl~~~~g~wv~~~~~~~~--------------------------~~g~~l~f~~~~~G~v~~~vn  123 (123)
T smart00588       81 NACPDLVDMSGFWAKALGEGLA--------------------------EQGGILGLDVLAEGEVVGVIN  123 (123)
T ss_pred             cCcccccccCCcceEECChhhc--------------------------cCCCEEEEEECCCceEEEEeC
Confidence            9899999999999998766544                          889999999999999999997

>KOG4625|consensus

Probab=100.00  E-value=1.9e-36  Score=277.62  Aligned_cols=174  Identities=31%  Similarity=0.609  Sum_probs=148.6

Q ss_pred             CCCCCCCCCCCcccccCCCCCEEEecCCeEEEecCcCCceEEEeCCcCCCCCEEEEEEEeecCCccceeEEeeeeeCCCC
Q psy16632          4 GSNSGTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAH   83 (203)
Q Consensus         4 ~~~~~~~~~~~l~FH~~~G~nI~Ls~~~~~A~R~~sf~~giVFS~rPL~~gE~f~v~I~~~~~~wsG~l~iGvT~~dP~~   83 (203)
                      +++.......+++||.+||+||+|++++++|+|.++||+||+||+|||++||.|+|||+|++..|||+||+|||..||+.
T Consensus        91 ~n~~~p~~~~pl~fH~iHGsNi~I~~~g~~A~RraSF~dAItFSnRPl~~~E~f~v~ieki~~~WSG~irlGvT~~dPe~  170 (595)
T KOG4625|consen   91 SNQVTPLSRFPLQFHSIHGSNIRIDNSGTLAKRRASFCDAITFSNRPLRIGELFLVEIEKIERGWSGHLRLGVTSLDPED  170 (595)
T ss_pred             cCCcCcCCCCCceeecccCcceEECCCcceeehhhhhcceeeeccCcCCCCcEEEEEEEEeccCccceeEeecccCCHhh
Confidence            34445568889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCchhhhhhccccCCccEEEEEECCCceEEEEEcCcce
Q psy16632         84 LKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEK  163 (203)
Q Consensus        84 l~~~lP~~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~~~G~l~~~vNG~~~  163 (203)
                      +++..+.+|||||++.++||++++++.++|.-.+.-.|               +...|+ ++++++.+|.+||++++.++
T Consensus       171 i~~~~~tfa~PDL~nl~G~Wa~al~e~~~n~~~i~~~~---------------v~~~g~-v~~~in~~~~~~fftgi~~~  234 (595)
T KOG4625|consen  171 IRPSPETFACPDLVNLSGFWAKALPETYRNEGNILAFA---------------VNPKGR-VFYGINGSGKMHFFTGIRTQ  234 (595)
T ss_pred             ccCCCccccCcchhccCchhhhhcchhhcccccchhhh---------------hcCCCc-ceeeecCcceEEEeeccccc
Confidence            98722368999999999999999999887543332222               224444 57889999999999999999


Q ss_pred             eeEeeccCCCCceEEEEeccCCceEEEEecC
Q psy16632        164 GVFFTGVETRGPLWAMFDIYGNSTAIQLIDS  194 (203)
Q Consensus       164 G~~~~~v~~~~pLwavvDvyG~t~~V~lv~~  194 (203)
                      |.++++-+.. ..|+.+|+|+.+.++++.+.
T Consensus       235 ~~a~~~~s~~-~~r~~~~l~~~~~~~sl~~a  264 (595)
T KOG4625|consen  235 GHACSRPSLA-QARHPVDLLVQCVPVSLHDA  264 (595)
T ss_pred             chhhccCCch-heeehhhhhccccchhhhhc
Confidence            9888765432 69999999999999988654

>KOG4625|consensus

Probab=99.96  E-value=2.5e-30  Score=237.40  Aligned_cols=155  Identities=33%  Similarity=0.655  Sum_probs=140.3

Q ss_pred             CCCcccccCCCCCEEEecCCeEEEecC-cCCceEEEeCCcCCCCCEEEEEEEeecCCccceeEEeeeeeCCCCCCC-CCC
Q psy16632         12 LPPLYFHQVHGENVRVSRDGTVAKRYE-SFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAHLKY-ALP   89 (203)
Q Consensus        12 ~~~l~FH~~~G~nI~Ls~~~~~A~R~~-sf~~giVFS~rPL~~gE~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~-~lP   89 (203)
                      ..+++||.++|.||+|++++++|.|.. .|++++||++|||+.+|+|+|+|+++...|.|+|.||+|+|||+++++ .||
T Consensus       291 ~~~~rfH~~~G~nv~l~~d~tvA~r~~~~~s~glVFterPlr~~e~~~Ikv~~v~~l~~G~L~lGvT~~dpg~l~p~~Lp  370 (595)
T KOG4625|consen  291 DGPLRFHATKGANVRLSDDGTVARREHGAYSQGLVFTERPLRVGEKLEIKVTRVGRLYAGALSLGVTTCDPGTLRPADLP  370 (595)
T ss_pred             CCccceeeeccccccccCCCcccccccccccceEEEEecccccCCEEEEEeeecchhhcchhhccceecCccccccCCCC
Confidence            558999999999999999999999975 499999999999999999999999999999999999999999999998 899


Q ss_pred             CCCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCchhhhhhccccCCccEEEEEECCCceEEEEEcCcceeeEeec
Q psy16632         90 RYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTG  169 (203)
Q Consensus        90 ~~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~~~G~l~~~vNG~~~G~~~~~  169 (203)
                      .+ ...|.++++||+.. |....                        .+..||++.|+++..|||++.+||...|+.+ +
T Consensus       371 ~s-p~~l~~rpe~w~~s-~~ia~------------------------~~~~~~~~~~~v~~~Gel~~~~~g~~a~~~l-~  423 (595)
T KOG4625|consen  371 FS-PEALVDRPEYWVVS-CDIAG------------------------PPHVGDILQLVVNAYGELELSHNGAAAGVQL-C  423 (595)
T ss_pred             CC-hhhhccchhhhhhe-eeccc------------------------CcccCceeeEEEcCCCcEEEeecCCceEEEE-E
Confidence            77 47899999999864 33222                        2388999999999999999999999999998 5


Q ss_pred             cCCCCceEEEEeccCCceEEEEec
Q psy16632        170 VETRGPLWAMFDIYGNSTAIQLID  193 (203)
Q Consensus       170 v~~~~pLwavvDvyG~t~~V~lv~  193 (203)
                      +|.+.+||+.+|+||.+.++++.+
T Consensus       424 vD~sl~l~~~~~~~g~~as~~~~~  447 (595)
T KOG4625|consen  424 VDASLPLWMLFDVYGTIASIRILG  447 (595)
T ss_pred             ecCceeeeeeccccchhhhhhhcc
Confidence            999999999999999888777765

>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i

Probab=99.96  E-value=1.6e-29  Score=176.95  Aligned_cols=68  Identities=56%  Similarity=0.984  Sum_probs=53.0

Q ss_pred             Cccccc-CCCCCEEEecCCeEEEecCcCCceEEEeCCcCCCCCEEEEEEEeecCCccceeEEeeeeeCC
Q psy16632         14 PLYFHQ-VHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDP   81 (203)
Q Consensus        14 ~l~FH~-~~G~nI~Ls~~~~~A~R~~sf~~giVFS~rPL~~gE~f~v~I~~~~~~wsG~l~iGvT~~dP   81 (203)
                      ||+||+ +||+||+|++|+++|+|.++|++|||||+|||+++|+|+|+|++.+..|+|+|+||||++||
T Consensus         1 pl~FH~~~~G~nV~L~~~~~~A~R~~sf~~giVFS~rPl~~~E~~~v~I~~~~~~wsG~L~~GvT~~~P   69 (69)
T PF07177_consen    1 PLRFHPNVHGKNVRLSNDGTVARRVSSFNNGIVFSSRPLRIGEKFEVRIDEVEPSWSGSLRIGVTSCDP   69 (69)
T ss_dssp             S--EEC-EE-TTEEE-SSS-EEEEST-SSS-EEEESS-B-TT-EEEEEEEEE-SSSSS--EEEEESS-C
T ss_pred             CccccCcccCCCEEEcCCCeEEEecccCCceEEEecCCccCCCEEEEEEEecCCCceeEEEEeeEccCC
Confidence            689998 89999999999999999999999999999999999999999999999999999999999998

e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.

>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function

Probab=97.91  E-value=0.00035  Score=52.15  Aligned_cols=108  Identities=18%  Similarity=0.259  Sum_probs=69.5

Q ss_pred             EEEEEEEeecCCccceeEEeeeeeCCCCCCC-CCCCCCCCCCCCCCCeeEEeccc--cccccceeeeeeeeccCCchhhh
Q psy16632         56 KVYVKLLEISTNWSGVIRFGFTANDPAHLKY-ALPRYVCPDLTNKPGYWAKALAE--RFADQETVLFYYVIVQPGYWAKA  132 (203)
Q Consensus        56 ~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~-~lP~~a~~dL~~~~~~W~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  132 (203)
                      .|||+|.+...     +.||+++.+-..-.. .+       +......|.+....  .+.++..              ..
T Consensus         5 YwEV~v~~~~~-----~~iGv~~~~~~~~~~~~~-------~g~~~~s~~~~~~~~~~~~~~~~--------------~~   58 (124)
T PF00622_consen    5 YWEVEVDSGGS-----ISIGVATSSASVSGDENL-------SGYDPFSWGFHGDGGKKYHGGTS--------------EE   58 (124)
T ss_dssp             EEEEEETGGCT-----EEEEEEETTSEESSSTS--------TTSSTTEEEEETTTTTEEESTSS--------------SE
T ss_pred             EEEEEEecCcC-----EEEEEeECccccCCcccc-------CCccccceeeeccccccceeecc--------------cc
Confidence            47888876444     999998876511100 11       11123678875433  1111110              00


Q ss_pred             hhccccCC-ccEEEEEEC-CCceEEEEEcCccee-eEeeccCCCCceEEEEeccCCceEEEE
Q psy16632        133 LAERFADQ-ETVLFYYVT-AAGDVHFGINGEEKG-VFFTGVETRGPLWAMFDIYGNSTAIQL  191 (203)
Q Consensus       133 ~~~~~~~~-gd~l~~~~~-~~G~l~~~vNG~~~G-~~~~~v~~~~pLwavvDvyG~t~~V~l  191 (203)
                      ..... .. +|+|++.++ ..|+|.|++||+..+ ..+++++.+.+||.+|-+++ ..+|++
T Consensus        59 ~~~~~-~~~~dvIG~~lD~~~g~l~F~~ng~~~~~~~f~~~~~~~~l~P~v~~~~-~~~~~~  118 (124)
T PF00622_consen   59 TGSPF-QEPGDVIGCGLDLDNGELSFYKNGKFLGIYAFTDIDFSEPLYPAVSLGG-GQSVEL  118 (124)
T ss_dssp             CSCTS-STTTSEEEEEEETTTTEEEEEETTEEEEEEEEESCTTSSSBEEEEEEES-TSEEEE
T ss_pred             ccccc-ccCCcEEEEEEeecccEEEEEECCccceeEEEECCCCCCcEEEEEEecC-CCEEEE
Confidence            11112 44 999999997 679999999999988 77877888789999999997 444554

Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A ....

>smart00449 SPRY Domain in SPla and the RYanodine Receptor

Probab=97.84  E-value=0.00079  Score=50.38  Aligned_cols=105  Identities=19%  Similarity=0.352  Sum_probs=68.2

Q ss_pred             EEEEEEEeecCCccceeEEeeeeeCCCCCCCCCCCCCCCCCCCCCCeeEEecccc--ccccceeeeeeeeccCCchhhhh
Q psy16632         56 KVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAER--FADQETVLFYYVIVQPGYWAKAL  133 (203)
Q Consensus        56 ~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~lP~~a~~dL~~~~~~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  133 (203)
                      .|||+|.+     ++.++||+.+.+=.. ..    .  ..+-....+|.+.....  +.++..  .            ..
T Consensus         5 YwEV~v~~-----~~~~~vGv~~~~~~r-~~----~--~~~G~~~~sw~~~~~~g~~~~~~~~--~------------~~   58 (122)
T smart00449        5 YFEVEIFD-----GGHWRVGVATKSVPR-GY----F--ALLGEDKGSWGYDGDGGKKYHNSTG--P------------EY   58 (122)
T ss_pred             EEEEEEcC-----CCeEEEEEEcCccCC-Cc----c--ccCCCCCCEEEEEcCCCcEEeCCCC--C------------cc
Confidence            57888875     688999997643211 00    0  11222347898765431  222110  0            01


Q ss_pred             hccccCCccEEEEEEC-CCceEEEEEcCcce-eeEeeccCCCCceEEEEeccCCc
Q psy16632        134 AERFADQETVLFYYVT-AAGDVHFGINGEEK-GVFFTGVETRGPLWAMFDIYGNS  186 (203)
Q Consensus       134 ~~~~~~~gd~l~~~~~-~~G~l~~~vNG~~~-G~~~~~v~~~~pLwavvDvyG~t  186 (203)
                      .......+|+|++.++ ..|+|.|+.||+.. +.++.+++-+++||.+|-+++..
T Consensus        59 ~~~~~~~gd~iGv~lD~~~g~l~F~~ng~~~~~~~f~~~~~~~~l~P~~~~~~~~  113 (122)
T smart00449       59 GLPLQEPGDVIGCFLDLEAGTISFYKNGKYLHGLAFFDVKFSGPLYPAVSLGSGC  113 (122)
T ss_pred             CccccCCCCEEEEEEECCCCEEEEEECCCEeeeEEEeccCCCCcEeeEEEcCCCC
Confidence            1112235999999997 67999999999998 78777787777999999999765

Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.

>KOG4030|consensus

Probab=96.62  E-value=0.081  Score=42.69  Aligned_cols=141  Identities=20%  Similarity=0.326  Sum_probs=83.8

Q ss_pred             CCCCCccccc-CCCCCEEEecCCeEEEecCcCCceEEEeCCcCCC-CCEEEEEEEeecCCccceeEEeeeeeCCCCCCCC
Q psy16632         10 NNLPPLYFHQ-VHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKI-NEKVYVKLLEISTNWSGVIRFGFTANDPAHLKYA   87 (203)
Q Consensus        10 ~~~~~l~FH~-~~G~nI~Ls~~~~~A~R~~sf~~giVFS~rPL~~-gE~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~   87 (203)
                      +..+..+.-. ..|++|.|-.++...+-.     |=+...-||.. -..|+|+|.+     .|.-.||+-+..-. +. .
T Consensus        24 ~e~P~V~LD~~hMG~dVvilk~g~RicGt-----GG~lAtaPlvQnKsYFevkiQ~-----tG~WgiGlat~q~~-l~-~   91 (197)
T KOG4030|consen   24 NEVPTVRLDVGHMGKDVVILKEGERICGT-----GGALATAPLVQNKSYFEVKIQQ-----TGTWGIGLATKQSP-LD-K   91 (197)
T ss_pred             hcCCcEEeehhccCCcEEEEecCcEEecc-----CceeeeeeeecccceEEEEEee-----cceeeeeeeeccCc-cc-c
Confidence            3445566665 469999998777655533     33445667744 5779999975     34445666553221 11 2


Q ss_pred             CCCCCCCCCCCCCCeeEEecccc-ccccceeeeeeeeccCCchhhhhhccccCCccEEEEEECCCceEEEEEcCcceeeE
Q psy16632         88 LPRYVCPDLTNKPGYWAKALAER-FADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVF  166 (203)
Q Consensus        88 lP~~a~~dL~~~~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~~~G~l~~~vNG~~~G~~  166 (203)
                      .|-. +     ..++|.+..... +.|.+.            ..+.-....+.+||++++.-++ =||.|++||...-.-
T Consensus        92 ~p~g-~-----d~~sw~~r~dga~~hnnee------------~~r~pa~~~p~EGDvVGvayDH-VELnfY~NGKn~e~p  152 (197)
T KOG4030|consen   92 VPGG-C-----DEKSWGIRDDGAIAHNNEE------------VARMPATVFPEEGDVVGVAYDH-VELNFYVNGKNVEDP  152 (197)
T ss_pred             CCCC-C-----cceeEEEccCCchhcccHH------------HhcCccccCCccCcEEEEEeee-EEEEEEEcCceeccc
Confidence            3422 2     136897743221 111110            0001122356899999987643 589999999998887


Q ss_pred             eeccCCCCceEEEEecc
Q psy16632        167 FTGVETRGPLWAMFDIY  183 (203)
Q Consensus       167 ~~~v~~~~pLwavvDvy  183 (203)
                      +++|.-  ++|.|+=|-
T Consensus       153 ~~gvRG--~vyPvvYVd  167 (197)
T KOG4030|consen  153 ITGVRG--PVYPVVYVD  167 (197)
T ss_pred             cccccc--ceeeEEEeC
Confidence            888865  899887554

>KOG2626|consensus

Probab=94.77  E-value=0.19  Score=47.39  Aligned_cols=54  Identities=20%  Similarity=0.227  Sum_probs=40.9

Q ss_pred             CCCCEEEecCCeEEEecCcCCceEEEeCCcCCCC-CEEEEEEEeecCCccceeEEeeee
Q psy16632         21 HGENVRVSRDGTVAKRYESFCKGVAFSSRPVKIN-EKVYVKLLEISTNWSGVIRFGFTA   78 (203)
Q Consensus        21 ~G~nI~Ls~~~~~A~R~~sf~~giVFS~rPL~~g-E~f~v~I~~~~~~wsG~l~iGvT~   78 (203)
                      +..++.+++|+.+|.-.++|..  |=+++-+..| ..|+|.|++.  .-.+++|+|.-+
T Consensus       300 rA~ql~Is~drlt~tgeKGy~M--vRAshgv~~G~WYFEI~vd~~--pd~~a~RlGwsq  354 (544)
T KOG2626|consen  300 RAEQLKISEDRLTATGEKGYRM--VRASHGVLEGAWYFEIKVDEM--PDDAAIRLGWSQ  354 (544)
T ss_pred             ccccccccccceeeecccceee--eeecccccccceeEEEEeecC--CCccceeeeccc
Confidence            5788999999999988887754  3455555555 7899999887  556889999644

>KOG3953|consensus

Probab=94.75  E-value=0.097  Score=44.67  Aligned_cols=53  Identities=19%  Similarity=0.429  Sum_probs=43.9

Q ss_pred             cCCccEEEEEEC-CCceEEEEEcCcceeeEeeccCCCCceEEE-EeccCCceEEEEe
Q psy16632        138 ADQETVLFYYVT-AAGDVHFGINGEEKGVFFTGVETRGPLWAM-FDIYGNSTAIQLI  192 (203)
Q Consensus       138 ~~~gd~l~~~~~-~~G~l~~~vNG~~~G~~~~~v~~~~pLwav-vDvyG~t~~V~lv  192 (203)
                      ...++++.+.++ .+|.|.|.+|++-.|+++++++ +..||++ -.|||.|. |++.
T Consensus       141 ~~vp~ri~viLDm~egtl~F~~~~e~LGvAFRgL~-~~~LYP~Vsav~g~~E-vtm~  195 (242)
T KOG3953|consen  141 YNVPDRILVILDMIEGTLSFAADGEYLGVAFRGLK-DKKLYPAVSAVWGHCE-VTMK  195 (242)
T ss_pred             hcCCceEEEEEeeccceEEEEECCeEEeeeecCCC-CCcceeeeeehhccee-EEEE
Confidence            367788777775 8899999999999999999998 7799955 57889886 6654

>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white

Probab=83.21  E-value=3.8  Score=29.37  Aligned_cols=40  Identities=20%  Similarity=0.282  Sum_probs=26.1

Q ss_pred             eEEEeCCcC-CCCCEEEEEEE--eecCCc---cceeEEeeeeeCCCC
Q psy16632         43 GVAFSSRPV-KINEKVYVKLL--EISTNW---SGVIRFGFTANDPAH   83 (203)
Q Consensus        43 giVFS~rPL-~~gE~f~v~I~--~~~~~w---sG~l~iGvT~~dP~~   83 (203)
                      +.+|++||+ +|||.+.+++.  ..+ .+   .-...+-++-.||+.
T Consensus         2 ~~i~TDr~iYrPGetV~~~~~~~~~~-~~~~~~~~~~~~v~i~dp~g   47 (99)
T PF01835_consen    2 IFIQTDRPIYRPGETVHFRAIVRDLD-NDFKPPANSPVTVTIKDPSG   47 (99)
T ss_dssp             EEEEESSSEE-TTSEEEEEEEEEEEC-TTCSCESSEEEEEEEEETTS
T ss_pred             EEEECCccCcCCCCEEEEEEEEeccc-cccccccCCceEEEEECCCC
Confidence            679999999 99999999997  443 21   122344455556643

A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	203
2yue_A	168	Solution Structure Of The Neuz (Nhr) Domain In Neur		8e-56
2e63_A	170	Solution Structure Of The Neuz Domain In Kiaa1787 P		3e-09

>pdb|2YUE|A Chain A, Solution Structure Of The Neuz (Nhr) Domain In Neuralized From Drosophila Melanogaster Length = 168

Iteration: 1
 Score =  213 bits (541), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 95/185 (51%), Positives = 127/185 (68%), Gaps = 26/185 (14%)
Query: 14  PLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIR 73
           PL FH VHG+N+R+SRDGT+A+R+ESFC+ + FS+RPV+INE++ VK  EIS NW+G IR
Sbjct: 8   PLQFHSVHGDNIRISRDGTLARRFESFCRAITFSARPVRINERICVKFAEISNNWNGGIR 67
Query: 74  FGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKAL 133
           FGFT+NDP  L+  LP+Y CPDLTN+PG+WAKAL E++ +++                  
Sbjct: 68  FGFTSNDPVTLEGTLPKYACPDLTNRPGFWAKALHEQYCEKD------------------ 109
Query: 134 AERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQLID 193
                    +L+YYV  AGDV +GIN EEKGV  TG++TR  LW + DIYGN T I+ +D
Sbjct: 110 --------NILYYYVNGAGDVIYGINNEEKGVILTGIDTRSLLWTVIDIYGNCTGIEFLD 161
Query: 194 SRAQL 198
           SR  +
Sbjct: 162 SRIYM 166

>pdb|2E63|A Chain A, Solution Structure Of The Neuz Domain In Kiaa1787 Protein Length = 170

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 28/183 (15%)
Query: 17  FHQVHGENVRVSRDGTVAKRYE---SFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIR 73
            H   G  V +S  G  A+R +    F  G+  S  P++      V++     +WSG I 
Sbjct: 9   LHPRTGRLVSLSACGRTARRQQPGQEFNHGLVLSREPLRDGRVFTVRIDRKVNSWSGSIE 68
Query: 74  FGFTANDPAHLKYALPRYVCPDLTN--KPGYWAKALAERFADQETVLFYYV--IVQPGYW 129
            G TA DP+ L +       P      K G W  +      D  +VL  Y   + Q G  
Sbjct: 69  IGVTALDPSVLDF-------PSSATGLKGGSWVVSGCSVLRDGRSVLEEYGQDLDQLGEG 121
Query: 130 AKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAI 189
            +   ER            T AG++   +NG + GV  TG+  R  +WA+ D+YG  T I
Sbjct: 122 DRVGVER------------TVAGELRLWVNGRDCGVAATGLPPR--VWAVVDLYGKCTQI 167
Query: 190 QLI 192
            ++
Sbjct: 168 TVL 170

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
2yue_A	168	Protein neuralized; structure genomics, NEUZ(NHR)	1e-70
2e63_A	170	KIAA1787 protein; structure genomics, neuralized d	3e-55

>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster} Length = 168

 Score =  211 bits (538), Expect = 1e-70
 Identities = 95/188 (50%), Positives = 128/188 (68%), Gaps = 26/188 (13%)

Query: 8   GTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTN 67
            + +  PL FH VHG+N+R+SRDGT+A+R+ESFC+ + FS+RPV+INE++ VK  EIS N
Sbjct: 2   SSGSSGPLQFHSVHGDNIRISRDGTLARRFESFCRAITFSARPVRINERICVKFAEISNN 61

Query: 68  WSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPG 127
           W+G IRFGFT+NDP  L+  LP+Y CPDLTN                          +PG
Sbjct: 62  WNGGIRFGFTSNDPVTLEGTLPKYACPDLTN--------------------------RPG 95

Query: 128 YWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNST 187
           +WAKAL E++ +++ +L+YYV  AGDV +GIN EEKGV  TG++TR  LW + DIYGN T
Sbjct: 96  FWAKALHEQYCEKDNILYYYVNGAGDVIYGINNEEKGVILTGIDTRSLLWTVIDIYGNCT 155

Query: 188 AIQLIDSR 195
            I+ +DSR
Sbjct: 156 GIEFLDSR 163

>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 170

 Score =  172 bits (437), Expect = 3e-55
 Identities = 45/182 (24%), Positives = 70/182 (38%), Gaps = 20/182 (10%)

Query: 14  PLYFHQVHGENVRVSRDGTVAKRYE---SFCKGVAFSSRPVKINEKVYVKLLEISTNWSG 70
               H   G  V +S  G  A+R +    F  G+  S  P++      V++     +WSG
Sbjct: 6   SGELHPRTGRLVSLSACGRTARRQQPGQEFNHGLVLSREPLRDGRVFTVRIDRKVNSWSG 65

Query: 71  VIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWA 130
            I  G TA DP+ L +            K G W  +      D  +VL  Y         
Sbjct: 66  SIEIGVTALDPSVLDFP-----SSATGLKGGSWVVSGCSVLRDGRSVLEEY--------- 111

Query: 131 KALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQ 190
                    +   +    T AG++   +NG + GV  TG+     +WA+ D+YG  T I 
Sbjct: 112 -GQDLDQLGEGDRVGVERTVAGELRLWVNGRDCGVAATGLPP--RVWAVVDLYGKCTQIT 168

Query: 191 LI 192
           ++
Sbjct: 169 VL 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
2yue_A	168	Protein neuralized; structure genomics, NEUZ(NHR)	100.0
2e63_A	170	KIAA1787 protein; structure genomics, neuralized d	100.0
2yyo_A	171	SPRY domain-containing protein 3; NPPSFA, national	98.49
3toj_A	213	SET1/ASH2 histone methyltransferase complex subun;	98.31
3emw_A	217	SPRY domain-containing SOCS box protein 2; apoptos	98.07
2jk9_A	212	SPRY domain-containing SOCS box protein 1; transcr	97.64
2afj_A	226	Gene rich cluster, C9 gene; beta sandwich, gene re	97.05
2vok_A	188	52 kDa RO protein; polymorphism, immune system, me	95.97
3uv9_A	186	TRIM5alpha, tripartite motif-containing protein 5;	95.77
2fbe_A	201	Predicted: similar to RET finger protein-like 1; d	94.61
2wl1_A	191	Pyrin, marenostrin; amyloidosis, polymorphism, cyt	93.63
4b3n_A	602	Maltose-binding periplasmic protein, tripartite mo	83.82
3kb5_A	193	Tripartite motif-containing protein 72; B30.2, gus	83.4

>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}

Probab=100.00  E-value=6.8e-58  Score=369.72  Aligned_cols=162  Identities=59%  Similarity=1.164  Sum_probs=152.8

Q ss_pred             CCCCCCCcccccCCCCCEEEecCCeEEEecCcCCceEEEeCCcCCCCCEEEEEEEeecCCccceeEEeeeeeCCCCCCCC
Q psy16632          8 GTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAHLKYA   87 (203)
Q Consensus         8 ~~~~~~~l~FH~~~G~nI~Ls~~~~~A~R~~sf~~giVFS~rPL~~gE~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~   87 (203)
                      +++..++|+||+.||+||+|++++++|+|.++|++|||||+|||++||+|+|||++.+.+|+|+|+||||+|||++++.+
T Consensus         2 ~~~~~~~l~FH~~~G~nI~L~~~~~~A~R~~sf~~givFS~RPl~~~E~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~~~   81 (168)
T 2yue_A            2 SSGSSGPLQFHSVHGDNIRISRDGTLARRFESFCRAITFSARPVRINERICVKFAEISNNWNGGIRFGFTSNDPVTLEGT   81 (168)
T ss_dssp             CCCCCSSCCEEEEECTTEEECCSSCCEEECSCSSCCEEEESSCCCSSCCEEEEEEECCSSSSSCCEEEEESSCGGGTTTC
T ss_pred             CCCCCCCcccccccCCCeEECCCCcEEEecccCCceEEEECCCCcCCCEEEEEEEeecCCcceeEEEeeeecCHHHcCCC
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999756


Q ss_pred             CCCCCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCchhhhhhccccCCccEEEEEECCCceEEEEEcCcceeeEe
Q psy16632         88 LPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFF  167 (203)
Q Consensus        88 lP~~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~~~G~l~~~vNG~~~G~~~  167 (203)
                      ||++|||||.++++||++++++.++                          ..||+++|+++++|+|||+|||+++|+++
T Consensus        82 lP~~a~~dL~~~~~~W~~~l~~~~~--------------------------~~g~~l~f~v~~~G~l~~~iNg~~~g~~~  135 (168)
T 2yue_A           82 LPKYACPDLTNRPGFWAKALHEQYC--------------------------EKDNILYYYVNGAGDVIYGINNEEKGVIL  135 (168)
T ss_dssp             CCSSSSSHHHHSTTBCCEECCSTTC--------------------------CSSCEEEEEECTTSEEEEEESSCEEEEEE
T ss_pred             CCCcCchHHhcCCCEEEEEeccccc--------------------------cCCCEEEEEEcCCCEEEEEECCCccEEEE
Confidence            9998899999999999998766554                          77999999999999999999999999999


Q ss_pred             eccCCCCceEEEEeccCCceEEEEecCc
Q psy16632        168 TGVETRGPLWAMFDIYGNSTAIQLIDSR  195 (203)
Q Consensus       168 ~~v~~~~pLwavvDvyG~t~~V~lv~~~  195 (203)
                      ++||+++||||||||||+|+||+|++++
T Consensus       136 ~~V~~~~pLwavvDvyG~t~~V~il~~~  163 (168)
T 2yue_A          136 TGIDTRSLLWTVIDIYGNCTGIEFLDSR  163 (168)
T ss_dssp             ECCCCSSCCEEEEECCSSCSEEEEECHH
T ss_pred             cCCCCCCceEEEEEccCCeEEEEEecce
Confidence            9999999999999999999999999865

>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=9.3e-53  Score=340.28  Aligned_cols=164  Identities=29%  Similarity=0.430  Sum_probs=150.1

Q ss_pred             CCCcccccCCCCCEEEecCCeEEEec---CcCCceEEEeCCcCCCCCEEEEEEEeecCCccceeEEeeeeeCCCCCCCCC
Q psy16632         12 LPPLYFHQVHGENVRVSRDGTVAKRY---ESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAHLKYAL   88 (203)
Q Consensus        12 ~~~l~FH~~~G~nI~Ls~~~~~A~R~---~sf~~giVFS~rPL~~gE~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~l   88 (203)
                      +.+++||+.||+||+|++++++|+|.   ++|++|||||+|||++||+|+|||++.+.+|+|+|++|||+|||++++  +
T Consensus         4 ~~~l~FH~~hG~nI~L~~~~~~A~R~~~~~~f~~givFS~rPl~~~E~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~--l   81 (170)
T 2e63_A            4 GSSGELHPRTGRLVSLSACGRTARRQQPGQEFNHGLVLSREPLRDGRVFTVRIDRKVNSWSGSIEIGVTALDPSVLD--F   81 (170)
T ss_dssp             CCSSCCCSCCCSSEEECSSSCEEEESCTTTCSCSCCEEEEEEECTTCEEEEEEEEECCSSCCCCEEEEESSCTTSCC--C
T ss_pred             ccccccccccCCCeEECCCCeEEEeCCCCcccCceEEEECCCCCCCCEEEEEEEeecCCcceeEEEEEEccChhhcc--C
Confidence            56789999999999999999999998   699999999999999999999999999999999999999999999995  7


Q ss_pred             CCCCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCchhhhhhccccCCccEEEEEECCCceEEEEEcCcceeeEee
Q psy16632         89 PRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFT  168 (203)
Q Consensus        89 P~~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~~~G~l~~~vNG~~~G~~~~  168 (203)
                      |+++ ++|  +++||+++++.+..||..+.++|+     ..++     .+..||+++|+++++|+|||+|||+++|++++
T Consensus        82 P~~~-~~L--~~~~Wv~~~~~v~~ng~~~~e~~~-----~~l~-----~l~~Gd~ig~~~~~~G~l~~~iNg~~~g~~~~  148 (170)
T 2e63_A           82 PSSA-TGL--KGGSWVVSGCSVLRDGRSVLEEYG-----QDLD-----QLGEGDRVGVERTVAGELRLWVNGRDCGVAAT  148 (170)
T ss_dssp             CSSG-GGC--CSSEEEESSSEEEESSCEEEESCS-----SCGG-----GCCSSCCEEEEECTTSCEEEEESSCEEEEEEC
T ss_pred             CCCh-hhC--CCCeEEEeccccccCCcccchhcc-----cccc-----ccCCCCEEEEEEcCCcEEEEEECCccceeeEc
Confidence            9886 888  469999998888889988888886     1111     23799999999999999999999999999999


Q ss_pred             ccCCCCceEEEEeccCCceEEEEe
Q psy16632        169 GVETRGPLWAMFDIYGNSTAIQLI  192 (203)
Q Consensus       169 ~v~~~~pLwavvDvyG~t~~V~lv  192 (203)
                      +||  +||||||||||+|+||+|+
T Consensus       149 ~ip--~~LwavvDvyG~t~~V~iv  170 (170)
T 2e63_A          149 GLP--PRVWAVVDLYGKCTQITVL  170 (170)
T ss_dssp             CCC--SCEEEEEECCTTEEEEEEC
T ss_pred             CCC--CcEEEEEEccCCEEEEEEC
Confidence            887  5999999999999999986

>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}

Probab=98.49  E-value=1.3e-05  Score=63.82  Aligned_cols=144  Identities=15%  Similarity=0.161  Sum_probs=94.2

Q ss_pred             CCCCEEEecCCeEEEecCcCCceEEEeCCcCCCC-CEEEEEEEeecCCccceeEEeeeeeCCCCCCCCCCCCCCCCCCCC
Q psy16632         21 HGENVRVSRDGTVAKRYESFCKGVAFSSRPVKIN-EKVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNK   99 (203)
Q Consensus        21 ~G~nI~Ls~~~~~A~R~~sf~~giVFS~rPL~~g-E~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~lP~~a~~dL~~~   99 (203)
                      +..+|.++++..+... .+..-+.|.++.|+..| -.|||+|.+...  .|.++||+.+.+ ..+. .+|     .-  .
T Consensus         7 r~~~l~~~~d~l~~~~-~~~~~~~vra~~p~~~g~~YfEv~i~~~~~--~~~~~IG~a~~~-~~~~-~~~-----G~--d   74 (171)
T 2yyo_A            7 GFKHILVDGDTLSYHG-NSGEVGCYVASRPLTKDSNYFEVSIVDSGV--RGTIAVGLVPQY-YSLD-HQP-----GW--L   74 (171)
T ss_dssp             EEESEEEETTEEEECC-CSSCCEEEECSSCCCSSSCEEEEEEEEETT--TCCCEEEEECTT-CCTT-SCT-----TS--S
T ss_pred             CcceEEEcCCEEEEeC-CCCceeEEEECCCCCCCCEEEEEEEEECCC--CcEEEEEecCCC-CCCc-cCC-----Cc--c
Confidence            3457888777544333 23355889999999776 578999987543  589999998732 2221 122     11  2


Q ss_pred             CCeeEEecccc--ccccceeeeeeeeccCCchhhhhhccccCCccEEEEEECCC------ceEEEEEcCcceeeEeeccC
Q psy16632        100 PGYWAKALAER--FADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAA------GDVHFGINGEEKGVFFTGVE  171 (203)
Q Consensus       100 ~~~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~~~------G~l~~~vNG~~~G~~~~~v~  171 (203)
                      ..+|.+...+.  +.+.. .-..|+             +.-..||+|++.++.+      ++|.|..||+..|+++.+++
T Consensus        75 ~~S~gy~~~dG~~~~~~~-~~~~yg-------------~~f~~GDvIGc~id~~~~~~~~~~i~Ft~NG~~lg~af~~~~  140 (171)
T 2yyo_A           75 PDSVAYHADDGKLYNGRA-KGRQFG-------------SKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMPMS  140 (171)
T ss_dssp             TTCEEEETTTCCEESSSS-CCBCCS-------------CCCCTTCEEEEEECGGGGSSSCEEEEEEETTEEEEEEEESSC
T ss_pred             CCEEEEEcCCCeEEeCCC-CCCcCC-------------CCCCCCCEEEEEEEeccCCCCcEEEEEEECCEEcCceecCCc
Confidence            35787754322  21110 011121             1227899999999854      99999999999999998886


Q ss_pred             CCCceEEEEeccCCceEEEE
Q psy16632        172 TRGPLWAMFDIYGNSTAIQL  191 (203)
Q Consensus       172 ~~~pLwavvDvyG~t~~V~l  191 (203)
                      . .+||..|-++..-.+|++
T Consensus       141 ~-~~lyPaV~l~~~g~~v~v  159 (171)
T 2yyo_A          141 P-DGLFPAVGMHSLGEEVRL  159 (171)
T ss_dssp             S-SSCEEEEEECSTTEEEEE
T ss_pred             C-CCEEEEEEEecCCCEEEE
Confidence            3 489999999863344655

>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}

Probab=98.31  E-value=3e-05  Score=63.74  Aligned_cols=148  Identities=15%  Similarity=0.202  Sum_probs=97.9

Q ss_pred             Cccccc-CCCCCEEEecCCeEEEecCcCCceEEEeCCcCCCCC-EEEEEEEeecCCccceeEEeeeeeCCCCCCCCCCCC
Q psy16632         14 PLYFHQ-VHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPRY   91 (203)
Q Consensus        14 ~l~FH~-~~G~nI~Ls~~~~~A~R~~sf~~giVFS~rPL~~gE-~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~lP~~   91 (203)
                      ...+-+ .++.++.|++|+.++++..++  +-|-++.|+..|. .|||+|.+..  -.|.++||+.+.. ..+      .
T Consensus        12 ~v~ld~~d~~~~l~ls~d~l~v~~~~~~--~~vra~~~v~~G~~YfEV~v~~~~--~~~~~~iG~a~~~-~~~------~   80 (213)
T 3toj_A           12 RVLLALHDRAPQLKISDDRLTVVGEKGY--SMVRASHGVRKGAWYFEITVDEMP--PDTAARLGWSQPL-GNL------Q   80 (213)
T ss_dssp             CCCEEEEEECTTSEECTTSSEEECCSSC--EEEEESCCBSSEEEEEEEEEEECC--TTCEEEEEEECTT-SCT------T
T ss_pred             eEEechhhCCCCEEEcCCCcEEEeCCce--eEEEeCCCccCCeEEEEEEEeecC--CCceEEEEeccCC-ccc------c
Confidence            344554 478899999999999875433  6788999998763 4788887642  3578999998643 111      1


Q ss_pred             CCCCCCCCCCeeEEecccc--ccccceeeeeeeeccCCchhhhhhccccCCccEEEEEECC-C--------ceEEEEEcC
Q psy16632         92 VCPDLTNKPGYWAKALAER--FADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTA-A--------GDVHFGING  160 (203)
Q Consensus        92 a~~dL~~~~~~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~~-~--------G~l~~~vNG  160 (203)
                      ..  +-....+|.+.....  +.|+.  ...|+             ..-..||+||+.++- +        |+|.|+.||
T Consensus        81 ~~--~G~d~~S~gy~~~~G~~~h~~~--~~~yg-------------~~~~~GDvIGc~ld~~~~~~~~~~~g~i~Ft~NG  143 (213)
T 3toj_A           81 AP--LGYDKFSYSWRSKKGTKFHQSI--GKHYS-------------SGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNG  143 (213)
T ss_dssp             SC--TTSSTTEEEEETTTTCEEETTE--EECCS-------------CCCCTTCEEEEEEEECCC-----CCCEEEEEETT
T ss_pred             cC--CCCCCCcEEEECCCCeEEeCCc--CcccC-------------CCCCCCCEEEEEEEcCCCccccCCccEEEEEeCC
Confidence            11  111246788742221  22221  11221             112789999998873 2        799999999


Q ss_pred             cceeeEeeccCCCCceEEEEeccCCceEEEE
Q psy16632        161 EEKGVFFTGVETRGPLWAMFDIYGNSTAIQL  191 (203)
Q Consensus       161 ~~~G~~~~~v~~~~pLwavvDvyG~t~~V~l  191 (203)
                      +..|.+++++.. .+||..|-++.. .+|++
T Consensus       144 ~~lg~aF~~~~~-~~lyPavsl~~~-~~v~~  172 (213)
T 3toj_A          144 VNQGVAYKDIFE-GVYFPAISLYKS-CTVSI  172 (213)
T ss_dssp             EEEEEEEESCCS-SCBEEEEEEESS-CEEEE
T ss_pred             eeeeeeEEcCCC-CcEEEEEEcCCC-CEEEE
Confidence            999999998864 489999998753 24554

>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A

Probab=98.07  E-value=0.00017  Score=59.41  Aligned_cols=160  Identities=13%  Similarity=0.120  Sum_probs=97.5

Q ss_pred             ccccc-CCCCCEEEecCCeEEEec---CcCCceEEEeCCcCCCCC-EEEEEEEeecCCccceeEEeeeeeCCCCCCCCCC
Q psy16632         15 LYFHQ-VHGENVRVSRDGTVAKRY---ESFCKGVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTANDPAHLKYALP   89 (203)
Q Consensus        15 l~FH~-~~G~nI~Ls~~~~~A~R~---~sf~~giVFS~rPL~~gE-~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~lP   89 (203)
                      +++-+ ....++.||+|++.+++.   +.|  ..|.+..++..|. .|||+|.+...  .+...|||....-..-+.. .
T Consensus        44 ~tlDp~ta~~~L~lSed~~~v~~~~~~~~~--~~Vl~~~~~~sGrhYWEV~v~~~~~--g~~~~vGv~~~~~~r~~~g-~  118 (217)
T 3emw_A           44 HGWNPKDCSENIEVKEGGLYFERRPVAQST--DGARGKRGYSRGLHAWEISWPLEQR--GTHAVVGVATALAPLQTDH-Y  118 (217)
T ss_dssp             TSEEEEEECTTEEEEGGGTEEEECCBSSCE--EEEEESCCBSSSEEEEEEECCGGGC--TTCCEEEEECTTSCCEESS-S
T ss_pred             eEeCcccCCCCEEECCCCeEEEECccCCCC--CEEEeCCCccCccEEEEEEEcccCC--CCceeEEEEcCccccccCC-c
Confidence            44555 567899999999988874   344  4788999998774 46777754211  1368899977543210000 0


Q ss_pred             CCCCCCCCCCCCeeEEecccc--cccccee-eeeeeeccCCchhhhhhccccCCccEEEEEEC-CCceEEEEEcCcceee
Q psy16632         90 RYVCPDLTNKPGYWAKALAER--FADQETV-LFYYVIVQPGYWAKALAERFADQETVLFYYVT-AAGDVHFGINGEEKGV  165 (203)
Q Consensus        90 ~~a~~dL~~~~~~W~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~-~~G~l~~~vNG~~~G~  165 (203)
                      .   ..+-....+|.+.....  ..|+... ...|.        ..+.......+++|++.++ ..|.|.|++||+..|+
T Consensus       119 ~---~~lG~~~~SW~l~~~~g~~~h~~~~~~~~~~~--------~~~~~~~~~~~d~IGV~LD~~~G~LsFy~ng~~lg~  187 (217)
T 3emw_A          119 A---ALLGSNSESWGWDIGRGKLYHQSKGPGAPQYP--------AGTQGEQLEVPERLLVVLDMEEGTLGYAIGGTYLGP  187 (217)
T ss_dssp             C---CCTTSSTTEEEEETTTCBEESSCCSSCCCBSS--------SSSTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEE
T ss_pred             c---ccccCCCCEEEEEeCCCcEEeCCcccCCcccc--------ccccccCCCCCCEEEEEEEcCCCEEEEEECCeEeEE
Confidence            0   11222347898864221  1121100 00110        0000011267899999998 7799999999999999


Q ss_pred             EeeccCCCCceEEEEecc-CCceEEEEe
Q psy16632        166 FFTGVETRGPLWAMFDIY-GNSTAIQLI  192 (203)
Q Consensus       166 ~~~~v~~~~pLwavvDvy-G~t~~V~lv  192 (203)
                      +++++. +++||..|-+. |.|+ |+|+
T Consensus       188 aF~~~~-~~~LyP~~sl~~g~~~-v~l~  213 (217)
T 3emw_A          188 AFRGLK-GRTLYPAVSAVWGQCQ-VRIR  213 (217)
T ss_dssp             EECCCT-TCCBEEEEEECSTTCE-EEEE
T ss_pred             EEECCC-CCEEEEEEEeccCCcE-EEEE
Confidence            999876 46899999875 5443 6654

>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A

Probab=97.64  E-value=0.0034  Score=50.93  Aligned_cols=162  Identities=14%  Similarity=0.149  Sum_probs=95.6

Q ss_pred             ccccc-CCCCCEEEecCCe-EEEec-CcCCceEEEeCCcCCCCC-EEEEEEEeecCCccceeEEeeeeeCCCCCCCCCCC
Q psy16632         15 LYFHQ-VHGENVRVSRDGT-VAKRY-ESFCKGVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPR   90 (203)
Q Consensus        15 l~FH~-~~G~nI~Ls~~~~-~A~R~-~sf~~giVFS~rPL~~gE-~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~lP~   90 (203)
                      +.+.+ ....++.|++|++ +.++. ....-..|.+..++..|. .|||+|.+..  -++..+|||....-..-..   .
T Consensus        33 ~tldp~ta~~~L~lsed~~~~~~~~~~~~~~~~Vlg~~~f~sGrhYWEV~v~~~~--~~~~w~vGV~~~~~~r~~~---g  107 (212)
T 2jk9_A           33 HSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQ--RGTHAVVGVATADAPLHSV---G  107 (212)
T ss_dssp             TSEEEEEECTTEEEETTEEEEEEECCBTTEEEEEEESCCBCSSEEEEEEECCGGG--CTTCCEEEEECTTSCCEEE---S
T ss_pred             cccChhhcCCceEEeCCCeEEEEECCCCCccceEEcCCCccCCeEEEEEEEeccc--CCCcEEEEEEcCCcccccc---C
Confidence            45554 4678999999986 44443 222345788999998773 4677775321  1344579997643221000   0


Q ss_pred             CCCCCCCCCCCeeEEecccc--cccccee-eeeeeeccCCchhhh-hhccccCCccEEEEEEC-CCceEEEEEcCcceee
Q psy16632         91 YVCPDLTNKPGYWAKALAER--FADQETV-LFYYVIVQPGYWAKA-LAERFADQETVLFYYVT-AAGDVHFGINGEEKGV  165 (203)
Q Consensus        91 ~a~~dL~~~~~~W~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~gd~l~~~~~-~~G~l~~~vNG~~~G~  165 (203)
                      . ...+-....+|.+.....  ..++... ...|        ... ........+++|++.++ ..|+|.|+.||+..|.
T Consensus       108 ~-~~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~--------~~~~~~~~~~~~~~~IGv~LD~e~G~lsFy~ng~~l~~  178 (212)
T 2jk9_A          108 Y-TTLVGNNHESWGWDLGRNRLYHDGKNQPSKTY--------PAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGV  178 (212)
T ss_dssp             S-CCCTTSSTTEEEEETTTTEEEESTTTSCCEES--------STTSCTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEE
T ss_pred             c-ccccccCCCcEeeECCCCcEEECCcccCcccc--------CcccccCCcCCCCCEEEEEEECCCCEEEEEECCEEeEE
Confidence            0 011222357898864221  1111100 0000        000 00011257899999998 7899999999999999


Q ss_pred             EeeccCCCCceEEEEecc-CCceEEEEe
Q psy16632        166 FFTGVETRGPLWAMFDIY-GNSTAIQLI  192 (203)
Q Consensus       166 ~~~~v~~~~pLwavvDvy-G~t~~V~lv  192 (203)
                      +++++. ++|||.+|-+. |.+ .|+|.
T Consensus       179 aF~~~~-~~~l~P~f~l~~g~~-~v~l~  204 (212)
T 2jk9_A          179 AFRGLK-GKKLYPVVSAVWGHC-EIRMR  204 (212)
T ss_dssp             EECCCT-TCCBEEEEEECCTTC-EEEEE
T ss_pred             EeccCC-CCEEeeEEEEEcCCc-EEEEE
Confidence            998876 56999999984 655 36654

>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22

Probab=97.05  E-value=0.0073  Score=49.60  Aligned_cols=163  Identities=13%  Similarity=0.130  Sum_probs=97.2

Q ss_pred             ccccc-CCCCCEEEecCCeEEEec---CcCCceEEEeCCcCCCCC-EEEEEEEeecCCccceeEEeeeeeCCCCCCCCCC
Q psy16632         15 LYFHQ-VHGENVRVSRDGTVAKRY---ESFCKGVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTANDPAHLKYALP   89 (203)
Q Consensus        15 l~FH~-~~G~nI~Ls~~~~~A~R~---~sf~~giVFS~rPL~~gE-~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~lP   89 (203)
                      +.+.+ ....++.|++|++.+++.   ++|.  .|.+..++..|. .+||+|...  .-++...|||....-..-+.   
T Consensus        41 ~tLDp~ta~~~L~lSed~~~v~~~~~~~~~~--~Vlg~~~f~sGrhYWEV~V~~~--~~~~~w~vGV~~~s~~~~r~---  113 (226)
T 2afj_A           41 HGWNPKDCSENIDVKEGGLCFERRPVAQSTD--GVRGKRGYSRGLHAWEISWPLE--QRGTHAVVGVATALAPLQAD---  113 (226)
T ss_dssp             HSSCCSSSCCSSEEETTTTEEECSSCTTTSS--SEEECCCCCCSEEEEEEECCCC--SSSCCCEEEEEESSCCCSSC---
T ss_pred             cEEccccCCCCEEEeCCCEEEEECCCCCCcC--eEEECCCccCCEEEEEEEEecc--CCCCCEEEEecCCccccccc---
Confidence            44555 567899999999888763   3443  788899998774 467777542  12345789997744321000   


Q ss_pred             CCCCCCCCCCCCeeEEecccc--cccccee-eeeeeeccCCchhhhhhccccCCccEEEEEEC-CCceEEEEEcCcceee
Q psy16632         90 RYVCPDLTNKPGYWAKALAER--FADQETV-LFYYVIVQPGYWAKALAERFADQETVLFYYVT-AAGDVHFGINGEEKGV  165 (203)
Q Consensus        90 ~~a~~dL~~~~~~W~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~-~~G~l~~~vNG~~~G~  165 (203)
                      .. ...+-....+|.+.....  ..++... ...|.        ..........+++|++.++ +.|+|.|+.||+..|.
T Consensus       114 ~~-~~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~--------~~~~~~~~~~~~rIGV~LD~e~G~lSFy~ng~~l~~  184 (226)
T 2afj_A          114 HY-AALLGSNSESWGWDIGRGKLYHQSKGLEAPQYP--------AGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGP  184 (226)
T ss_dssp             SS-SCCCCCSCEEEEEEGGGTSTTSSSSCCSCSSSS--------CCSGGGGSCCSSCEEEEEETTTTEEEEESTTCSCST
T ss_pred             cc-cccccCCCCcEEEEcCCCeEEECccccCccccc--------ccccCCcCCCCCEEEEEEECCCCEEEEEECCeEeEE
Confidence            00 011212347898864221  1121100 00010        0000012256899999998 7899999999999998


Q ss_pred             EeeccCCCCceEEEEecc-CC-ceEEEEecC
Q psy16632        166 FFTGVETRGPLWAMFDIY-GN-STAIQLIDS  194 (203)
Q Consensus       166 ~~~~v~~~~pLwavvDvy-G~-t~~V~lv~~  194 (203)
                      +++++. ++|||.+|-+. |. ...|...+.
T Consensus       185 aF~~~~-~~~L~P~f~l~~g~~~v~l~~~~g  214 (226)
T 2afj_A          185 AFRGLK-GRTLYPSVSAVWGQCQVRIRYMGE  214 (226)
T ss_dssp             THHHHH-HHCCEEEEEECCTTSCCEEEEESC
T ss_pred             EEEcCC-CCEEEEEEEcccCCCEEEEEEcCC
Confidence            887765 45999999984 64 344444443

>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*

Probab=95.97  E-value=0.47  Score=37.89  Aligned_cols=155  Identities=14%  Similarity=0.209  Sum_probs=90.2

Q ss_pred             CCccccc-CCCCCEEEecCCeEEEecC----------cCCc-eEEEeCCcCCCCC-EEEEEEEeecCCccceeEEeeeee
Q psy16632         13 PPLYFHQ-VHGENVRVSRDGTVAKRYE----------SFCK-GVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTAN   79 (203)
Q Consensus        13 ~~l~FH~-~~G~nI~Ls~~~~~A~R~~----------sf~~-giVFS~rPL~~gE-~f~v~I~~~~~~wsG~l~iGvT~~   79 (203)
                      ..+.+.+ .-..++.||+|++.+++..          .|.. ..|...+.+..|. .+||++..     ++.-.+||+..
T Consensus         9 ~~vtLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~-----~~~w~vGV~~~   83 (188)
T 2vok_A            9 VHITLDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKMYWEVDVTQ-----KEAWDLGVCRD   83 (188)
T ss_dssp             CCCCBCGGGSCTTEEECTTSCEEEECSSCCCCCCCTTSCCSSSEEEBSCCBSSSEEEEEEECTT-----CSCEEEEEEET
T ss_pred             cceEECCccCCCCeEECCCCCEEEECCccCCCCCCccceeeeccccccCcccCCCeEEEEEecC-----CceEEEEEeeC
Confidence            4455665 4567999999999988742          2443 4788888887774 47887753     23457898764


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCchhhhhhccccCCccEEEEEEC-CCceEEEEE
Q psy16632         80 DPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVT-AAGDVHFGI  158 (203)
Q Consensus        80 dP~~l~~~lP~~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~-~~G~l~~~v  158 (203)
                      .-..-. ..      .|....++|.+.....    .     |.+....    .....+.....+||+.++ +.|.|.|+-
T Consensus        84 si~Rkg-~~------~~~~~~~~W~l~~~~~----~-----y~~~~~~----~~~l~~~~~~~rVGVfLDye~G~lSFY~  143 (188)
T 2vok_A           84 SVQRKG-QF------SLSPENGFWTIWLWQD----S-----YEAGTSP----QTTLHIQVPPCQIGIFVDYEAGVVSFYN  143 (188)
T ss_dssp             TCCCSS-CC------CCSTTTTEEEEEEETT----E-----EEECSSS----CEEECCSSCCSEEEEEEETTTTEEEEEE
T ss_pred             CcCCCC-cc------ccCCCCCEEEEEEECC----E-----EEEEeCC----ccCEecCCCCCEEEEEEEcCCCEEEEEE
Confidence            321100 11      1334568998864321    0     1111000    000012244678999998 779999884


Q ss_pred             cCcce-eeEee--ccCCCCceEEEEeccCC-----ceEEEEec
Q psy16632        159 NGEEK-GVFFT--GVETRGPLWAMFDIYGN-----STAIQLID  193 (203)
Q Consensus       159 NG~~~-G~~~~--~v~~~~pLwavvDvyG~-----t~~V~lv~  193 (203)
                       -.+. -.+.+  .+.=++|||++|-+...     ...++|..
T Consensus       144 -v~~~~~~I~tF~~~~Fs~pL~P~F~~~~~~~~~~~~~l~i~~  185 (188)
T 2vok_A          144 -ITDHGSLIYTFSECVFAGPLRPFFNVGFNYSGGNAAPLKLCP  185 (188)
T ss_dssp             -TTTTTEEEEEECSCCCCSCEEEEEECCCCTTSCCCCCEEECC
T ss_pred             -CCCCCeeeEEecCCCCCCCEEeEEEecccCCCCCCCCEEEeC
Confidence             3344 33322  22336799999998743     34577764

>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}

Probab=95.77  E-value=0.19  Score=39.97  Aligned_cols=152  Identities=15%  Similarity=0.202  Sum_probs=82.9

Q ss_pred             CEEEecCCeEEEecCcCCceEEEeCCcCCCC-CEEEEEEEeecCCccceeEEeeeeeCCCCCCCCCCCCCCCCCCCCCCe
Q psy16632         24 NVRVSRDGTVAKRYESFCKGVAFSSRPVKIN-EKVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGY  102 (203)
Q Consensus        24 nI~Ls~~~~~A~R~~sf~~giVFS~rPL~~g-E~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~lP~~a~~dL~~~~~~  102 (203)
                      ++.||+|++.++....   .-|.....+..| -.+||++..     ++.-.+||.......-.......  ..+....++
T Consensus        23 ~l~lSed~r~Vr~~~~---~~VLG~~~ftsGrHYWEVeV~~-----~~~W~vGV~~~~~~r~~~~~~~~--~~~~~~~g~   92 (186)
T 3uv9_A           23 HAVIAEDKRQVSSRAG---TGVLGSQSITSGKHYWEVDVSK-----KSAWILGVCAGFQSDAMYNIEQN--ENYQPKYGY   92 (186)
T ss_dssp             CCEECTTSSCEECCCS---SCEECSSCBCSSEEEEEEECTT-----CSCEEEEEESCSTTTTTTTHHHH--TCCCGGGTE
T ss_pred             CceECCCCCEEeecCC---CcCcCCCCCCCCCEEEEEEEcC-----CCcEEEEEEEEEecccccccCCC--cccCCCCCE
Confidence            5789999988854332   237788888766 457888753     23346788543222110000000  113334579


Q ss_pred             eEEeccccccccceeeeeeeeccCCchhh-----hhhccccCCccEEEEEEC-CCceEEEEEcCcceeeE-ee--ccCCC
Q psy16632        103 WAKALAERFADQETVLFYYVIVQPGYWAK-----ALAERFADQETVLFYYVT-AAGDVHFGINGEEKGVF-FT--GVETR  173 (203)
Q Consensus       103 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~gd~l~~~~~-~~G~l~~~vNG~~~G~~-~~--~v~~~  173 (203)
                      |++...+...        |.....+....     .....+...-.+|++.++ +.|.|.|+ |-.+.+.+ .+  ...=+
T Consensus        93 W~l~~~~~~~--------y~~~~~~~~~~~~~~~~~~l~~~~~p~rVGVfLDye~G~lSFY-nv~d~~~lI~tF~~~~Fs  163 (186)
T 3uv9_A           93 WVIGLQEGVK--------YSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEACTVSFF-NITNHGFLIYKFSQCSFS  163 (186)
T ss_dssp             EEEEEETTTE--------EEEEECCCTTSTTSCEEEECCCSSCCSEEEEEEETTTTEEEEE-ETTTTTEEEEEECSCCCS
T ss_pred             EEEEECCCCE--------EEEEeCCCccccCCCccCcccccccCCEEEEEeecCCCEEEEE-eCCCCceEEEEeCCcCCC
Confidence            9886433110        11000000000     000112244578999998 77999987 55565533 22  33446


Q ss_pred             CceEEEEeccCCceEEEEecC
Q psy16632        174 GPLWAMFDIYGNSTAIQLIDS  194 (203)
Q Consensus       174 ~pLwavvDvyG~t~~V~lv~~  194 (203)
                      +|||.+|.+......++|..+
T Consensus       164 ~pL~P~F~~~~~~~plticpp  184 (186)
T 3uv9_A          164 KPVFPYLNPRKCTVPMTLCSP  184 (186)
T ss_dssp             SCBEEEEECTTCCSCCEECCC
T ss_pred             CCEEeEEECCCCCceEEEeCC
Confidence            799999999766666887654

>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22

Probab=94.61  E-value=1.4  Score=35.39  Aligned_cols=156  Identities=10%  Similarity=0.086  Sum_probs=90.3

Q ss_pred             Cccccc-CCCCCEEEecCCeEEEecC----------cCCc-eEEEeCCcCCCCC-EEEEEEEeecCCccceeEEeeeeeC
Q psy16632         14 PLYFHQ-VHGENVRVSRDGTVAKRYE----------SFCK-GVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTAND   80 (203)
Q Consensus        14 ~l~FH~-~~G~nI~Ls~~~~~A~R~~----------sf~~-giVFS~rPL~~gE-~f~v~I~~~~~~wsG~l~iGvT~~d   80 (203)
                      .+.|.+ ....++.||+|++.+++..          .|.. ..|...+.+..|. .+||++..     ++.-.|||....
T Consensus        11 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~-----~~~w~vGV~~~s   85 (201)
T 2fbe_A           11 DMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGT-----SQVWDVGVCKES   85 (201)
T ss_dssp             CCCEETTTCCTTEEECTTSSEEEECSSCCCCCCCTTSCSSSCEEEESCCBSSSEEEEEEECTT-----CSEEEEEEEETT
T ss_pred             eEEECcccCCCceEECCCCcEEEECCccCCCCCCccceeeccceecCccccCCceEEEEEeCC-----CCEEEEEEeeCc
Confidence            456665 5578999999999988742          2443 4788888887774 47887753     234678997643


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCchhhhhhccccCCccEEEEEEC-CCceEEEEEc
Q psy16632         81 PAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVT-AAGDVHFGIN  159 (203)
Q Consensus        81 P~~l~~~lP~~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~-~~G~l~~~vN  159 (203)
                      -..-. ..      .+....++|.+......        .|.+.. ..   ...-.+.....+|++.++ +.|.|.|+- 
T Consensus        86 i~Rkg-~~------~~~~~~g~W~l~~~~~~--------~y~~~~-~~---~~~l~~~~~~~rVGVfLDye~G~lSFY~-  145 (201)
T 2fbe_A           86 VNRQG-KI------ELSSEHGFLTVGCREGK--------VFAAST-VP---MTPLWVSPQLHRVGIFLDVGMRSIAFYN-  145 (201)
T ss_dssp             SCCSS-CC------CCCTTTTEEEEEEETTT--------EEEECS-SS---CEEECCCTTCCEEEEEEETTTTEEEEEE-
T ss_pred             cCCCC-cc------cccCCCCEEEEEEeCCC--------EEEEEc-CC---cccCccCCCCCEEEEEEEcCCCEEEEEe-
Confidence            21110 11      13334579988643211        011100 00   000012244578999998 779999884 


Q ss_pred             CcceeeEee--ccCCCCceEEEEecc----CCceEEEEecC
Q psy16632        160 GEEKGVFFT--GVETRGPLWAMFDIY----GNSTAIQLIDS  194 (203)
Q Consensus       160 G~~~G~~~~--~v~~~~pLwavvDvy----G~t~~V~lv~~  194 (203)
                      -.++..+.+  ...-++|||.+|-+.    |....++|...
T Consensus       146 v~~~~~i~tF~~~~Fs~pL~P~F~~~~~~~~~~~~l~ic~~  186 (201)
T 2fbe_A          146 VSDGCHIYTFIEIPVCEPWRPFFAHKRGSQDDQSILSICSV  186 (201)
T ss_dssp             TTTTEEEEEECSCCCSSCEEEEEEEECSSSSCCCCEEECCC
T ss_pred             CCCCceeEEEcCCCCCCCEEeEEEecccCCCCCCCEEEeCC
Confidence            334444433  222367999999886    23336787653

>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}

Probab=93.63  E-value=2.2  Score=33.90  Aligned_cols=155  Identities=14%  Similarity=0.157  Sum_probs=88.5

Q ss_pred             Cccccc-CCCCCEEEecCCeEEEecC----------cCCc-eEEEeCCcCCCCC-EEEEEEEeecCCccceeEEeeeeeC
Q psy16632         14 PLYFHQ-VHGENVRVSRDGTVAKRYE----------SFCK-GVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTAND   80 (203)
Q Consensus        14 ~l~FH~-~~G~nI~Ls~~~~~A~R~~----------sf~~-giVFS~rPL~~gE-~f~v~I~~~~~~wsG~l~iGvT~~d   80 (203)
                      .+.|.+ ....++.||+|++.+++..          .|.. ..|...+.+..|. .+||++..     ++.-.+||....
T Consensus        14 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrHYWEVev~~-----~~~w~vGV~~~s   88 (191)
T 2wl1_A           14 NVILDAETAYPNLIFSDDLKSVRLGNKWERLPDGPQRFDSCIIVLGSPSFLSGRRYWEVEVGD-----KTAWILGACKTS   88 (191)
T ss_dssp             CCEECTTTSCTTEEECTTSCEEEECCTTCCCCCCTTSCSSSCCEEEECCBCSSEEEEEEECTT-----CSCEEEEEEETT
T ss_pred             eeEECCccCCCceEECCCCcEEEECCcCCCCCCCcccccccccccCcccccCCCEEEEEEeCC-----CCEEEEEEeeCC
Confidence            566666 5677999999999988742          2433 4678888887774 47887753     234678997643


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCchhhhhhccccCCccEEEEEEC-CCceEEEEEc
Q psy16632         81 PAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVT-AAGDVHFGIN  159 (203)
Q Consensus        81 P~~l~~~lP~~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~-~~G~l~~~vN  159 (203)
                      -..-. ..      .|....++|.+......        .|.......  ..+  .+.....+||+.++ +.|.|.|+- 
T Consensus        89 ~~Rkg-~~------~~~~~~~~W~l~~~~~~--------~y~~~~~~~--~~l--~~~~~~~rVGVfLDye~G~lSFY~-  148 (191)
T 2wl1_A           89 ISRKG-NM------TLSPENGYWVVIMMKEN--------EYQASSVPP--TRL--LIKEPPKRVGIFVDYRVGSISFYN-  148 (191)
T ss_dssp             CCSSS-CC------CCCGGGTEEEEEEEETT--------EEEECCSSC--EEC--CCSSCCSEEEEEEETTTTEEEEEE-
T ss_pred             cCCCC-cc------ccCCCCCEEEEEEeCCC--------EEEEEcCCC--ccC--ccccCCcEEEEEEEcCCCEEEEEE-
Confidence            22110 11      13334579988643210        111100000  000  11234578999998 779999884 


Q ss_pred             CcceeeEee--ccCCCCceEEEEeccCC-----ceEEEEec
Q psy16632        160 GEEKGVFFT--GVETRGPLWAMFDIYGN-----STAIQLID  193 (203)
Q Consensus       160 G~~~G~~~~--~v~~~~pLwavvDvyG~-----t~~V~lv~  193 (203)
                      -.+...+.+  .+.-++|||++|-+...     ...++|..
T Consensus       149 v~~~~~i~tF~~~~Fs~pl~P~F~~~~~~~~~~~~~l~i~~  189 (191)
T 2wl1_A          149 VTARSHIYTFASCSFSGPLQPIFSPGTRDGGKNTAPLTICP  189 (191)
T ss_dssp             TTTTEEEEEECCCCCCSCEEEEEECCCCGGGTSCSCEEEEC
T ss_pred             CCCCcceEEeCCCCCCCCEEeEEEccccCCCCCcCCEEecC
Confidence            344444433  22336799999988632     23466654

>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A

Probab=83.82  E-value=14  Score=33.89  Aligned_cols=152  Identities=16%  Similarity=0.247  Sum_probs=76.4

Q ss_pred             CEEEecCCeEEEec------------------CcCCc-eEEEeCCcCCCC-CEEEEEEEeecCCccceeEEeeeeeCCCC
Q psy16632         24 NVRVSRDGTVAKRY------------------ESFCK-GVAFSSRPVKIN-EKVYVKLLEISTNWSGVIRFGFTANDPAH   83 (203)
Q Consensus        24 nI~Ls~~~~~A~R~------------------~sf~~-giVFS~rPL~~g-E~f~v~I~~~~~~wsG~l~iGvT~~dP~~   83 (203)
                      ++.||+|++..++.                  ..|.. ..|.....+..| -.+||+|.. ...|    .+||.......
T Consensus       421 ~l~~s~d~r~v~~~~~~~~~~~p~~~~~~~~~~rF~~~~~VLg~~~f~sGrhyWEV~v~~-~~~w----~~Gv~~~~~~~  495 (602)
T 4b3n_A          421 HAVIAEDKRQVSSRNPQIMYQAPGTLFTFPSLTNFNYCTGVLGSQSITSGKHYWEVDVSK-KSAW----ILGVCAGFQSD  495 (602)
T ss_dssp             SCEECTTSSEEECCCC--------------------CCCCEEESSCBSSSEEEEEEECTT-CSCE----EEEEECCCCTT
T ss_pred             ceeEecCCCEEEECCccccccCCCccCCCCCcccCCCCCEeccCCCCCCEEEEEEEEECC-CeeE----EEEEeeccccc
Confidence            57799998887642                  12332 357777777766 567888853 3456    57885432221


Q ss_pred             CCCCCCCCCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCc--hh-hh--hhccccCCccEEEEEEC-CCceEEEE
Q psy16632         84 LKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGY--WA-KA--LAERFADQETVLFYYVT-AAGDVHFG  157 (203)
Q Consensus        84 l~~~lP~~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~--~~~~~~~~gd~l~~~~~-~~G~l~~~  157 (203)
                      -.......  -.+....++|++...+..        .|.....+.  .. ..  ..-.+...=.+||+.++ +.|+|.|+
T Consensus       496 ~~~~~~~~--~~~~~~~g~w~~~~~~~~--------~y~~~~~~~~~~~~~~~~~~l~~~~~~~rvgv~ld~~~g~~sFy  565 (602)
T 4b3n_A          496 AMYNIEQN--ENYQPKYGYWVIGLQEGV--------KYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEACTVSFF  565 (602)
T ss_dssp             TSSTHHHH--CCCCGGGTEEEEEEETTT--------EEEEEECCCSSCCSSCEEEECCCSSCCSEEEEEEETTTTEEEEE
T ss_pred             cccccCCC--cccCCCCcEEEEEEecCC--------eEEEEeCCCcccccCCcccccccCCCCCEEEEEEecCCCEEEEE
Confidence            10000000  012234589988643321        011110000  00 00  00011123357889998 77899987


Q ss_pred             EcCcceee-Ee--eccCCCCceEEEEeccCCceEEEE
Q psy16632        158 INGEEKGV-FF--TGVETRGPLWAMFDIYGNSTAIQL  191 (203)
Q Consensus       158 vNG~~~G~-~~--~~v~~~~pLwavvDvyG~t~~V~l  191 (203)
                       |-.+++. +.  +...-+.|||.+|-+-.....++|
T Consensus       566 -~~~~~~~~i~tf~~~~f~~~l~P~f~~~~~~~~l~i  601 (602)
T 4b3n_A          566 -NITNHGFLIYKFSQCSFSKPVFPYLNPRKCTVPMTL  601 (602)
T ss_dssp             -ETTTTTEEEEEECSCCCCSCBEEEEECTTCSSCEEE
T ss_pred             -eCCCCceeeEeCCCcCCCCCEeCeEECCCCCCceEe
Confidence             3345543 23  234446799999998533444555

>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}

Probab=83.40  E-value=15  Score=28.95  Aligned_cols=147  Identities=18%  Similarity=0.191  Sum_probs=81.2

Q ss_pred             Cccccc-CCCCCEEEecCCeEEEecC-----------cCCc-eEEEeCCcCCCCC-EEEEEEEeecCCccceeEEeeeee
Q psy16632         14 PLYFHQ-VHGENVRVSRDGTVAKRYE-----------SFCK-GVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTAN   79 (203)
Q Consensus        14 ~l~FH~-~~G~nI~Ls~~~~~A~R~~-----------sf~~-giVFS~rPL~~gE-~f~v~I~~~~~~wsG~l~iGvT~~   79 (203)
                      .+.+-+ .-..++.||+|++.+++..           .|.. ..|.....+..|. .+||++...     +.-.+||+..
T Consensus        13 ~vtLDp~TA~~~L~lSed~~~v~~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrhYWEVev~~~-----~~W~lGV~~~   87 (193)
T 3kb5_A           13 ELTFDPSSAHPSLVVSSSGRRVECSEQKAPPAGEDPRQFDKAVAVVAHQQLSEGEHYWEVDVGDK-----PRWALGVIAA   87 (193)
T ss_dssp             CCCBCTTTSCTTEEEETTTTEEEECCSCCCCCCSCTTSCSSSCEEEBSCCBCSSEEEEEEECTTC-----SSEEEEEEET
T ss_pred             cEEECCCCCCCCEEECCCCCEEEECCcCCCCCCCCccccccccEEccCCcccCCCEEEEEEeCcC-----ceEEEEEeeC
Confidence            456665 4678899999999887732           2432 5788888887774 478877531     2347898764


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCchhhhhhccc-cCCccEEEEEEC-CCceEEEE
Q psy16632         80 DPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERF-ADQETVLFYYVT-AAGDVHFG  157 (203)
Q Consensus        80 dP~~l~~~lP~~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gd~l~~~~~-~~G~l~~~  157 (203)
                      .-..-. ...      +....++|.+......        .|.+......  ...-.+ ...-.+||+.++ +.|.|.|+
T Consensus        88 s~~Rkg-~~~------~~~~~~~W~l~~~~~~--------~y~~~~~~~~--~~~l~~~~~~~~rVGVfLDye~G~lSFY  150 (193)
T 3kb5_A           88 EAPRRG-RLH------AVPSQGLWLLGLREGK--------ILEAHVEAKE--PRALRSPERRPTRIGLYLSFGDGVLSFY  150 (193)
T ss_dssp             TSCCSS-SCC------CSGGGTEEEEEEETTT--------EEEECCSSSS--CEECCCCSSCCSEEEEEEETTTTEEEEE
T ss_pred             CcCcCC-CcC------CCCCCCEEEEEEeCCC--------EEEEEeCCCc--cEEEeecCCCCCEEEEEEEcCCCEEEEE
Confidence            322211 111      2224579988643211        1111110000  000011 133467899998 77899876


Q ss_pred             -EcCcc-eeeEeecc--CCCCceEEEEecc
Q psy16632        158 -INGEE-KGVFFTGV--ETRGPLWAMFDIY  183 (203)
Q Consensus       158 -vNG~~-~G~~~~~v--~~~~pLwavvDvy  183 (203)
                       +...+ +-.+.+ .  .=++|||.+|.+.
T Consensus       151 ~v~~~~~~s~I~t-F~~~Ft~pl~P~F~~~  179 (193)
T 3kb5_A          151 DASDADALVPLFA-FHERLPRPVYPFFDVC  179 (193)
T ss_dssp             ECCSTTCCEEEEE-ECSCCCSCEEEEEECC
T ss_pred             eCCCCCCceEEEE-eCCCCCCCeECEEEcc
Confidence             43211 222222 2  3357999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	203
d2afja1	213	b.29.1.22 (A:12-224) SPRY domain-containing SOCS b	0.003

>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 213

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: SPRY domain-containing SOCS box protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.8 bits (79), Expect = 0.003
 Identities = 25/170 (14%), Positives = 45/170 (26%), Gaps = 14/170 (8%)

Query: 21  HGENVRVSRDG-TVAKRYESFCKGVAFSSRPVKINEKVY--VKLLEISTNWSGVIRFGFT 77
             EN+ V   G    +R  +         R           +           V+    T
Sbjct: 42  CSENIDVKEGGLCFERRPVAQSTDGVRGKRGYS-RGLHAWEISWPLEQRGTHAVVGVA-T 99

Query: 78  ANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERF 137
           A  P                   G  +++        +       +  P Y A    E+ 
Sbjct: 100 ALAPLQ---------ADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQL 150

Query: 138 ADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNST 187
              E +L       G + + I G   G  F G++ R    ++  ++G   
Sbjct: 151 VVPERLLVVLDMEEGTLGYSIGGTYLGPAFRGLKGRTLYPSVSAVWGQCQ 200

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	203
d2afja1	213	SPRY domain-containing SOCS box protein 2 {Mouse (	98.91
d2fnja1	217	LD34464p {Fruit fly (Drosophila melanogaster) [Tax	98.88
d2fbea1	188	Similar to Ret finger protein-like 1 {Human (Homo	95.62
d2iwgb1	179	52 kDa Ro protein {Human (Homo sapiens) [TaxId: 96	93.94

>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: SPRY domain-containing SOCS box protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=3.6e-09  Score=84.96  Aligned_cols=159  Identities=13%  Similarity=0.177  Sum_probs=99.0

Q ss_pred             ccc-CCCCCEEEecCCeEEEec-CcCCceEEEeCCcCCCCCE-EEEEEEeecCCccceeEEeeeeeCCCCCCCCCCCCCC
Q psy16632         17 FHQ-VHGENVRVSRDGTVAKRY-ESFCKGVAFSSRPVKINEK-VYVKLLEISTNWSGVIRFGFTANDPAHLKYALPRYVC   93 (203)
Q Consensus        17 FH~-~~G~nI~Ls~~~~~A~R~-~sf~~giVFS~rPL~~gE~-f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~lP~~a~   93 (203)
                      |.+ .++.+|.|++++..+.+. .......|.+.+++..|.- |||+|.+  ....+.+.|||.+.+-.. ..  +.+ .
T Consensus        37 wnp~~~~~~i~ls~g~l~~~~~~~~~~~~~v~gt~~~ssGk~YwEv~i~~--~~~~~~~~iGv~~~~~~~-~~--~~~-~  110 (213)
T d2afja1          37 WNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPL--EQRGTHAVVGVATALAPL-QA--DHY-A  110 (213)
T ss_dssp             SCCSSSCCSSEEETTTTEEECSSCTTTSSSEEECCCCCCSEEEEEEECCC--CSSSCCCEEEEEESSCCC-SS--CSS-S
T ss_pred             CChhhcCCCeEEeCCCeEEEeCCccCccccEEECccccCCcEEEEEEEec--cCCcceEEEeEeecccCc-cc--cCc-c
Confidence            565 589999999999877664 3344467999999999976 6788864  344567899997654331 11  111 0


Q ss_pred             CCCCCCCCeeEEecccc--ccccceee-eeeeeccCCchhhhhhccccCCccEEEEEEC-CCceEEEEEcCcceeeEeec
Q psy16632         94 PDLTNKPGYWAKALAER--FADQETVL-FYYVIVQPGYWAKALAERFADQETVLFYYVT-AAGDVHFGINGEEKGVFFTG  169 (203)
Q Consensus        94 ~dL~~~~~~W~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~-~~G~l~~~vNG~~~G~~~~~  169 (203)
                      .-+-.....|.......  +.++.... .++..   ..+     ......||+|++.++ .+|.|+|++||+.+|+++++
T Consensus       111 ~~~G~~~~s~g~~~~~g~~~~~~~~~~~~~~~~---~~~-----g~~~~~gDvIGvaLD~d~g~i~F~kNG~~lG~af~~  182 (213)
T d2afja1         111 ALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPA---GPQ-----GEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRG  182 (213)
T ss_dssp             CCCCCSCEEEEEEGGGTSTTSSSSCCSCSSSSC---CSG-----GGGSCCSSCEEEEEETTTTEEEEESTTCSCSTTHHH
T ss_pred             cccccccCCcccccccceEeecccccccCCcCc---Ccc-----CcccCCCCEEEEEEeCCCCEEEEEECCEEeeeeEEC
Confidence            11212234676543221  11111100 00000   000     012268999999998 66999999999999999998


Q ss_pred             cCCCCceE-EEEeccCCceEEEE
Q psy16632        170 VETRGPLW-AMFDIYGNSTAIQL  191 (203)
Q Consensus       170 v~~~~pLw-avvDvyG~t~~V~l  191 (203)
                      ++. ++|| ||-++||.|. |+|
T Consensus       183 l~~-~~lyP~vs~~~g~~~-~~~  203 (213)
T d2afja1         183 LKG-RTLYPSVSAVWGQCQ-VRI  203 (213)
T ss_dssp             HHH-HCCEEEEEECCTTSC-CEE
T ss_pred             CCC-CeEEEEEEEecCCcE-EEE
Confidence            863 4799 5556889776 443

>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: LD34464p
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.88  E-value=4.6e-08  Score=78.68  Aligned_cols=162  Identities=11%  Similarity=0.126  Sum_probs=101.3

Q ss_pred             cccc-CCCCCEEEecCCeEEEec--CcCCceEEEeCCcCCCCC-EEEEEEEeecCCccceeEEeeeeeCCCCCCCCCCCC
Q psy16632         16 YFHQ-VHGENVRVSRDGTVAKRY--ESFCKGVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPRY   91 (203)
Q Consensus        16 ~FH~-~~G~nI~Ls~~~~~A~R~--~sf~~giVFS~rPL~~gE-~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~lP~~   91 (203)
                      ++.+ .+..+|.|++|+..+...  .+...+-|.+..++..|. .|||+|...  .....+.|||.+.+-..-.   ..+
T Consensus        25 ~wn~~~~~~~~~ls~~~~~~~~~~~~~~~~~~vrgt~g~ssGk~YWEV~v~~~--~~~~~~~IGV~~~~~~~~~---~~~   99 (217)
T d2fnja1          25 SWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGLTKGLHIWEIYWPTR--QRGTHAVVGVCTADAPLHS---VGY   99 (217)
T ss_dssp             SEEEEEECTTEEEETTEEEEEEECCCTTEEEEEEESCCBCSSEEEEEEECCGG--GCTTCCEEEEECTTSCSEE---ESS
T ss_pred             cCChhcCCCCEEEeCCCceEEEeCCccccCCeEEEcccccCCcEEEEEEEecC--CCCCeeEEEEEecccCccc---CCc
Confidence            4454 589999999998766443  344455799999999997 688888643  3344578999875522111   111


Q ss_pred             CCCCCCCCCCeeEEecccc--cccccee-eeeeeeccCCchhhhhhccccCCccEEEEEEC-CCceEEEEEcCcceeeEe
Q psy16632         92 VCPDLTNKPGYWAKALAER--FADQETV-LFYYVIVQPGYWAKALAERFADQETVLFYYVT-AAGDVHFGINGEEKGVFF  167 (203)
Q Consensus        92 a~~dL~~~~~~W~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~-~~G~l~~~vNG~~~G~~~  167 (203)
                       ..-+-....+|.......  +.++..- ...|.....       ....-..||+|++.++ .+|.|.|++||+.+|+++
T Consensus       100 -~~~~G~~~~s~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~g~~~~~gDvIGV~LD~d~gtLsF~kNG~~lGvAf  171 (217)
T d2fnja1         100 -QSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILK-------NDEAFLVPDKFLVALDMDEGTLSFIVDQQYLGIAF  171 (217)
T ss_dssp             -CCCTTSSTTEEEEETTTTEEEESTTTSCCEESSTTCC-------TTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred             -cccccCCCCcceEecCCCEEEecCCCccccccCcccc-------cCCccCCCCEEEEEEeCCCCEEEEEECCEEeeEEE
Confidence             111222346787754322  2222210 001100000       0012267999999998 789999999999999999


Q ss_pred             eccCCCCceE-EEEeccCCceEEEEe
Q psy16632        168 TGVETRGPLW-AMFDIYGNSTAIQLI  192 (203)
Q Consensus       168 ~~v~~~~pLw-avvDvyG~t~~V~lv  192 (203)
                      ++++. .+|| ||-.+||.| +|+|.
T Consensus       172 ~~l~~-~~lyP~vs~~~~~~-~v~~~  195 (217)
T d2fnja1         172 RGLRG-KKLYPIVSAVWGHC-EITMR  195 (217)
T ss_dssp             CCCTT-CCBEEEEEECCTTC-EEEEE
T ss_pred             eCCCC-CeEEEEEEeccCCc-EEEEE
Confidence            99864 5899 555688877 36654

>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: Similar to Ret finger protein-like 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.3  Score=36.91  Aligned_cols=145  Identities=12%  Similarity=0.108  Sum_probs=87.5

Q ss_pred             Cccccc-CCCCCEEEecCCeEEEec----------CcCCce-EEEeCCcCCCCCE-EEEEEEeecCCccceeEEeeeeeC
Q psy16632         14 PLYFHQ-VHGENVRVSRDGTVAKRY----------ESFCKG-VAFSSRPVKINEK-VYVKLLEISTNWSGVIRFGFTAND   80 (203)
Q Consensus        14 ~l~FH~-~~G~nI~Ls~~~~~A~R~----------~sf~~g-iVFS~rPL~~gE~-f~v~I~~~~~~wsG~l~iGvT~~d   80 (203)
                      ++.|-+ .--.++.||+|++.++..          +.|... .|+.+..+..|.- +||+|.+     +..-.+||+...
T Consensus        11 dvtLDp~TAh~~L~lS~d~~~V~~~~~~~~~p~~p~rF~~~~~VLg~~~fssGrHYWEV~V~~-----~~~w~vGV~~~s   85 (188)
T d2fbea1          11 DMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGT-----SQVWDVGVCKES   85 (188)
T ss_dssp             CCCEETTTCCTTEEECTTSSEEEECSSCCCCCCCTTSCSSSCEEEESCCBSSSEEEEEEECTT-----CSEEEEEEEETT
T ss_pred             eeEcCCCCCCCCEEEccCCcEEEECCcCCCCCCCcccccceeeccccccccCCCEEEEEEeee-----CCeEEEEEEeCC
Confidence            455666 567899999998888652          235444 5999999988854 7898753     234568998743


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCchhhhhhccccCCccEEEEEEC-CCceEEEEEc
Q psy16632         81 PAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVT-AAGDVHFGIN  159 (203)
Q Consensus        81 P~~l~~~lP~~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~-~~G~l~~~vN  159 (203)
                      -..-. .++      +.....+|.+.......        |.. ..+.   .....+...-.+|++.++ +.|.|.|+ |
T Consensus        86 v~Rk~-~~~------~~~~~~~w~l~~~~~~~--------~~~-~~~~---~~~l~~~~~~~rVGV~LDye~G~lSFy-n  145 (188)
T d2fbea1          86 VNRQG-KIE------LSSEHGFLTVGCREGKV--------FAA-STVP---MTPLWVSPQLHRVGIFLDVGMRSIAFY-N  145 (188)
T ss_dssp             SCCSS-CCC------CCTTTTEEEEEEETTTE--------EEE-CSSS---CEEECCCTTCCEEEEEEETTTTEEEEE-E
T ss_pred             cCcCc-ccc------cCCCCCCEEEEecCCcE--------EEe-cCCC---ceeeccCCCCCEEEEEEEcCCCEEEEE-e
Confidence            22111 122      33345789875432110        000 0000   000011234578999998 77899985 6


Q ss_pred             CcceeeEee--ccCCCCceEEEEecc
Q psy16632        160 GEEKGVFFT--GVETRGPLWAMFDIY  183 (203)
Q Consensus       160 G~~~G~~~~--~v~~~~pLwavvDvy  183 (203)
                      -+++..+.+  .++-++|||.+|-+.
T Consensus       146 ~~~~~~L~tF~~~~F~~pl~P~F~~~  171 (188)
T d2fbea1         146 VSDGCHIYTFIEIPVCEPWRPFFAHK  171 (188)
T ss_dssp             TTTTEEEEEECSCCCSSCEEEEEEEE
T ss_pred             CCCCcEEEEECCCCCCCCEeCeEECc
Confidence            666666644  345578999999986

>d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: 52 kDa Ro protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.85  Score=33.97  Aligned_cols=144  Identities=15%  Similarity=0.180  Sum_probs=82.8

Q ss_pred             ccccc-CCCCCEEEecCCeEEEecC----------cCCc-eEEEeCCcCCCC-CEEEEEEEeecCCccceeEEeeeeeCC
Q psy16632         15 LYFHQ-VHGENVRVSRDGTVAKRYE----------SFCK-GVAFSSRPVKIN-EKVYVKLLEISTNWSGVIRFGFTANDP   81 (203)
Q Consensus        15 l~FH~-~~G~nI~Ls~~~~~A~R~~----------sf~~-giVFS~rPL~~g-E~f~v~I~~~~~~wsG~l~iGvT~~dP   81 (203)
                      +.|-+ .--.++.||+|++.+++..          .|.. ..|.....+..| -.+||+|..     +..-++||+...-
T Consensus         3 lTLDp~TAh~~L~lS~d~~~V~~~~~~~~~p~~p~RF~~~~~VLg~~~f~sG~HYWEVeV~~-----~~~w~vGV~~~s~   77 (179)
T d2iwgb1           3 ITLDPDTANPWLILSEDRRQVRLGDTQQSIPGNEERFDSYPMVLGAQHFHSGKHYWEVDVTG-----KEAWDLGVCRDSV   77 (179)
T ss_dssp             CCBCTTTCCTTEEECTTSCEEEECSSCCCCCCCTTSCCSSSCEEBSCCBSSSEEEEEEECTT-----CSCEEEEEEETTC
T ss_pred             eEECCCcCCCCEEEcCCCCEEEECCcCcCCCCCcccccccccccccccccCCCEEEEEEEee-----CCeEEEEEEcCcc
Confidence            45555 4678899999999998731          2443 468888888777 457887742     2335678876443


Q ss_pred             CCCCCCCCCCCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCchhhhhhccccCCccEEEEEEC-CCceEEEEEcC
Q psy16632         82 AHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVT-AAGDVHFGING  160 (203)
Q Consensus        82 ~~l~~~lP~~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~-~~G~l~~~vNG  160 (203)
                      ..-. .+      .|....++|.+...+...        |.... ..  ...+ .+...-.+||+.++ +.|.|.|+ |-
T Consensus        78 ~Rk~-~~------~~~~~~~~W~l~~~~~~~--------~~~~~-~~--~~~l-~~~~~~~riGV~LD~e~G~lsFy-~v  137 (179)
T d2iwgb1          78 RRKG-HF------LLSSKSGFWTIWLWNKQK--------YEAGT-YP--QTPL-HLQVPPCQVGIFLDYEAGMVSFY-NI  137 (179)
T ss_dssp             CCSS-CC------CCCTTTTEEEEEEETTTE--------EEECC-SS--CEEE-CCSSCCSEEEEEEETTTTEEEEE-ET
T ss_pred             CcCc-cc------ccCCCCCEEEEEEeCCce--------EEEec-CC--CEeE-ccccCccEEEEEEecCCCEEEEE-eC
Confidence            3211 11      133456799886433211        10000 00  0000 01133457899998 77899988 53


Q ss_pred             cceeeE-ee--ccCCCCceEEEEecc
Q psy16632        161 EEKGVF-FT--GVETRGPLWAMFDIY  183 (203)
Q Consensus       161 ~~~G~~-~~--~v~~~~pLwavvDvy  183 (203)
                      .+.+.+ .+  ...=++|||.+|.+.
T Consensus       138 ~~~~~li~tf~~~~F~~pl~P~F~~~  163 (179)
T d2iwgb1         138 TDHGSLIYSFSECAFTGPLRPFFSPG  163 (179)
T ss_dssp             TTTTEEEEEECCCCCCSCEEEEEECC
T ss_pred             CCCCeEEEEeCCcCCCCCeECeEECc
Confidence            344333 22  233467999999986