Psyllid ID: psy16636

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-----
MGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGVALLTSTSLN
ccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccEEEccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEccccccHHHHHHHHHHHHHHHccccccEEEEEEEEEEcccccccccccccEEEEccEEcccccccccccccccccccccEEEEEEEEcccccccccEEEcccccccccccEEEEEEEccccccccHHHHHHHHHHHccccc
ccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHcccHHHcccccccccccccccccccHHHHHHHHHHccccccccHccccccccEEEEcccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccHHHHHHHHHHHHHHHccccHHHEEEEEEEEcccHHHccccccccEEEEEEEEcccccccccccHHHHHHccccEEEEEEEcccccccccEEEcEEEEEcccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHc
mgrtnlppekipwNALITLLSQsiyggkidndfDQRLLGSFLSKLFTTRSFEADFALVANvdgatrhinmpdgtrrdhFLHWieslpdrqtpswlglpnsaEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTEanenkteernvdgrpawMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICsggkrqtnYHRLLLSDLVKgmlparwcrysvprgctvIQWVTDFRLRIIQLQQVSLLVSqggakelkvypvwlgglfnpeaYITATRQCIAEANGWSLEELVLDVsitdcmepekintddcsfrVVGLklqgaqcrnneLVLTSTILMDLPVTLVRWVKVesetrqdklslpvylnstrtellfnvdlnitsgqdphsFYQRGVALLTSTSLN
mgrtnlppekipWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAyteanenkteernvdgrpaWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICsggkrqtnyHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKvesetrqdklslpvylnstrTELLFNVDLNITSGQDPHSFYQRGVALLTSTSLN
MGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFrlriiqlqqvsllvsqGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGVALLTSTSLN
**********IPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKM****************************AWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGVALL******
*****LPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLL*****************************PAWMRTLHNSASTWLELLPKALQTLRRT*ENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCME****NTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGVALLTSTSL*
MGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYT***********VDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGVALLTSTSLN
****NLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQ***********************GRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGVALLTSTSLN
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ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGVALLTSTSLN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query425 2.2.26 [Sep-21-2011]
P372764639 Dynein heavy chain, cytop yes N/A 0.995 0.091 0.734 0.0
Q142044646 Cytoplasmic dynein 1 heav yes N/A 0.978 0.089 0.591 1e-148
Q9JHU44644 Cytoplasmic dynein 1 heav yes N/A 0.978 0.089 0.589 1e-147
P386504644 Cytoplasmic dynein 1 heav yes N/A 0.978 0.089 0.584 1e-145
Q190204568 Dynein heavy chain, cytop yes N/A 0.92 0.085 0.429 5e-89
P340364730 Dynein heavy chain, cytop yes N/A 0.938 0.084 0.405 2e-85
Q271714540 Dynein heavy chain, cytop N/A N/A 0.938 0.087 0.345 2e-67
Q8VHE64621 Dynein heavy chain 5, axo no N/A 0.870 0.080 0.255 7e-24
Q8TE734624 Dynein heavy chain 5, axo no N/A 0.868 0.079 0.257 4e-22
P454444345 Dynein heavy chain, cytop yes N/A 0.284 0.027 0.412 2e-19
>sp|P37276|DYHC_DROME Dynein heavy chain, cytoplasmic OS=Drosophila melanogaster GN=Dhc64C PE=2 SV=2 Back     alignment and function desciption
 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/430 (73%), Positives = 368/430 (85%), Gaps = 7/430 (1%)

Query: 1    MGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVAN 60
            MGRTNLPPEK+PW+AL+TLLSQSIYGGKIDNDFDQRLL SFL KLFT RSFEADFALVAN
Sbjct: 4212 MGRTNLPPEKVPWDALVTLLSQSIYGGKIDNDFDQRLLTSFLKKLFTARSFEADFALVAN 4271

Query: 61   VDGAT---RHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKL 117
            VDGA+   RHI MPDGTRRDHFL WIE+L DRQTPSWLGLPN+AEKVLLTTRGTDLV+KL
Sbjct: 4272 VDGASGGLRHITMPDGTRRDHFLKWIENLTDRQTPSWLGLPNNAEKVLLTTRGTDLVSKL 4331

Query: 118  LKMQQLEDEDEFAYT--EANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRT 175
            LKMQQLED+DE AY+  + +E     R  DGRP+WM+TLHNSA+ WLELLPK LQ L+RT
Sbjct: 4332 LKMQQLEDDDELAYSVEDQSEQSAVGRGEDGRPSWMKTLHNSATAWLELLPKNLQVLKRT 4391

Query: 176  VENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLP 235
            VENIKDPLYRYFEREV+SG+ LL+ VI DL+DV+LIC G K+QTN+HR +LS+LV+G++P
Sbjct: 4392 VENIKDPLYRYFEREVTSGSRLLQTVILDLQDVVLICQGEKKQTNHHRSMLSELVRGIIP 4451

Query: 236  ARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYI 295
              W RY+VP GCTVIQW+TDF  R+ QLQ+VS LVSQ GAKEL+ +PVWLGGL NPEAYI
Sbjct: 4452 KGWKRYTVPAGCTVIQWITDFSNRVQQLQKVSQLVSQAGAKELQGFPVWLGGLLNPEAYI 4511

Query: 296  TATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLT 355
            TATRQC+A+AN WSLEEL LDV+ITD     K +  DC F V GLKLQGAQC+NNEL+L 
Sbjct: 4512 TATRQCVAQANSWSLEELALDVTITDA--GLKNDQKDCCFGVTGLKLQGAQCKNNELLLA 4569

Query: 356  STILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRG 415
            STI+MDLPVT+++W+K+ SE R  KL+LPVYLNSTRTELLF VDL + +GQ+ HSFY+RG
Sbjct: 4570 STIMMDLPVTILKWIKISSEPRISKLTLPVYLNSTRTELLFTVDLAVAAGQESHSFYERG 4629

Query: 416  VALLTSTSLN 425
            VA+LTST+LN
Sbjct: 4630 VAVLTSTALN 4639
Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.
Drosophila melanogaster (taxid: 7227)
>sp|Q14204|DYHC1_HUMAN Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5 Back     alignment and function description
>sp|Q9JHU4|DYHC1_MOUSE Cytoplasmic dynein 1 heavy chain 1 OS=Mus musculus GN=Dync1h1 PE=1 SV=2 Back     alignment and function description
>sp|P38650|DYHC1_RAT Cytoplasmic dynein 1 heavy chain 1 OS=Rattus norvegicus GN=Dync1h1 PE=1 SV=1 Back     alignment and function description
>sp|Q19020|DYHC_CAEEL Dynein heavy chain, cytoplasmic OS=Caenorhabditis elegans GN=dhc-1 PE=3 SV=1 Back     alignment and function description
>sp|P34036|DYHC_DICDI Dynein heavy chain, cytoplasmic OS=Dictyostelium discoideum GN=dhcA PE=1 SV=2 Back     alignment and function description
>sp|Q27171|DYHC_PARTE Dynein heavy chain, cytoplasmic OS=Paramecium tetraurelia GN=DHC-8 PE=2 SV=1 Back     alignment and function description
>sp|Q8VHE6|DYH5_MOUSE Dynein heavy chain 5, axonemal OS=Mus musculus GN=Dnah5 PE=1 SV=2 Back     alignment and function description
>sp|Q8TE73|DYH5_HUMAN Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3 Back     alignment and function description
>sp|P45444|DYHC_EMENI Dynein heavy chain, cytoplasmic OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nudA PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query425
383864984 4630 PREDICTED: dynein heavy chain, cytoplasm 0.992 0.091 0.765 0.0
383864986 4629 PREDICTED: dynein heavy chain, cytoplasm 0.992 0.091 0.765 0.0
383864988 4474 PREDICTED: dynein heavy chain, cytoplasm 0.992 0.094 0.765 0.0
322789292 4008 hypothetical protein SINV_10605 [Solenop 0.992 0.105 0.767 0.0
340708902 4641 PREDICTED: LOW QUALITY PROTEIN: dynein h 0.992 0.090 0.762 0.0
350419063 4641 PREDICTED: dynein heavy chain, cytoplasm 0.992 0.090 0.762 0.0
380028455 4628 PREDICTED: LOW QUALITY PROTEIN: dynein h 0.992 0.091 0.759 0.0
307195555 3852 Dynein heavy chain, cytoplasmic [Harpegn 0.992 0.109 0.762 0.0
307184071 1347 Dynein heavy chain, cytoplasmic [Campono 0.992 0.313 0.762 0.0
195125263 4641 GI12568 [Drosophila mojavensis] gi|19391 0.995 0.091 0.733 0.0
>gi|383864984|ref|XP_003707957.1| PREDICTED: dynein heavy chain, cytoplasmic-like isoform 1 [Megachile rotundata] Back     alignment and taxonomy information
 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/430 (76%), Positives = 371/430 (86%), Gaps = 8/430 (1%)

Query: 1    MGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVAN 60
            MGRTNLPPEK+PW+AL+TLLSQ IYGGKIDNDFDQRLL SFL KLFT RSFEADFALVAN
Sbjct: 4204 MGRTNLPPEKVPWDALVTLLSQCIYGGKIDNDFDQRLLASFLRKLFTPRSFEADFALVAN 4263

Query: 61   VDG---ATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKL 117
            +DG     RHI MPDGTRRDHFL WIESL DRQTPSWLGLPN+AEKVLLTTRGTDLV+KL
Sbjct: 4264 IDGLQGNQRHITMPDGTRRDHFLKWIESLSDRQTPSWLGLPNNAEKVLLTTRGTDLVSKL 4323

Query: 118  LKMQQLEDEDEFAYT-EANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTV 176
            LKMQQLEDEDE AY+ E + +   E   DGRP+WMRTLHNSASTWL+LLPK L TL+RTV
Sbjct: 4324 LKMQQLEDEDELAYSNEESLDTPREAEADGRPSWMRTLHNSASTWLQLLPKNLATLKRTV 4383

Query: 177  ENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPA 236
            ENIKDPLYRYFEREV+SGA LL+DVI DLEDV+LIC G K+QTNYHR++LS+LVKG+LP 
Sbjct: 4384 ENIKDPLYRYFEREVNSGAKLLQDVIHDLEDVVLICQGKKKQTNYHRIMLSELVKGILPG 4443

Query: 237  RWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYIT 296
             W RY+VPRGCTVIQW+TDF  R+ QLQ+VS LVSQGGAKE+K +PVWLGGL NPEAYIT
Sbjct: 4444 GWRRYTVPRGCTVIQWITDFSHRVSQLQEVSRLVSQGGAKEIKSFPVWLGGLLNPEAYIT 4503

Query: 297  ATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTS 356
            ATRQCIA+AN WSLEEL LDV+I D    + I TDDCSF V GLKLQGAQC++N+L LTS
Sbjct: 4504 ATRQCIAQANSWSLEELQLDVTIGDG---DNIATDDCSFAVTGLKLQGAQCKDNQLYLTS 4560

Query: 357  TILMDLPVTLVRWVKVES-ETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRG 415
            TI+ DLPVT++RW++  S + R+ KLSLPVYLNSTRTELLF VDLNI   QDPHSFY+RG
Sbjct: 4561 TIMTDLPVTMLRWIRSNSDDVRKGKLSLPVYLNSTRTELLFTVDLNIAPSQDPHSFYERG 4620

Query: 416  VALLTSTSLN 425
            VA+LTST+LN
Sbjct: 4621 VAVLTSTALN 4630

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383864986|ref|XP_003707958.1| PREDICTED: dynein heavy chain, cytoplasmic-like isoform 2 [Megachile rotundata] Back     alignment and taxonomy information
>gi|383864988|ref|XP_003707959.1| PREDICTED: dynein heavy chain, cytoplasmic-like isoform 3 [Megachile rotundata] Back     alignment and taxonomy information
>gi|322789292|gb|EFZ14612.1| hypothetical protein SINV_10605 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|340708902|ref|XP_003393056.1| PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain, cytoplasmic-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350419063|ref|XP_003492058.1| PREDICTED: dynein heavy chain, cytoplasmic-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|380028455|ref|XP_003697917.1| PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain, cytoplasmic-like [Apis florea] Back     alignment and taxonomy information
>gi|307195555|gb|EFN77430.1| Dynein heavy chain, cytoplasmic [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307184071|gb|EFN70606.1| Dynein heavy chain, cytoplasmic [Camponotus floridanus] Back     alignment and taxonomy information
>gi|195125263|ref|XP_002007101.1| GI12568 [Drosophila mojavensis] gi|193918710|gb|EDW17577.1| GI12568 [Drosophila mojavensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query425
FB|FBgn02617974639 Dhc64C "Dynein heavy chain 64C 0.995 0.091 0.711 6.4e-164
UNIPROTKB|E1BDX84646 DYNC1H1 "Uncharacterized prote 0.974 0.089 0.582 2.1e-129
MGI|MGI:1031474644 Dync1h1 "dynein cytoplasmic 1 0.974 0.089 0.579 9.1e-129
UNIPROTKB|Q142044646 DYNC1H1 "Cytoplasmic dynein 1 0.974 0.089 0.577 1.2e-128
UNIPROTKB|F1PGY94646 DYNC1H1 "Uncharacterized prote 0.974 0.089 0.575 3.1e-128
UNIPROTKB|F1LRT93642 Dync1h1 "Cytoplasmic dynein 1 0.974 0.113 0.577 3.3e-128
UNIPROTKB|F1NVQ74646 DYNC1H1 "Uncharacterized prote 0.974 0.089 0.575 6.4e-128
UNIPROTKB|F1NKL44653 DYNC1H1 "Uncharacterized prote 0.974 0.088 0.575 6.4e-128
RGD|25114644 Dync1h1 "dynein cytoplasmic 1 0.974 0.089 0.575 3.5e-127
ZFIN|ZDB-GENE-030131-70504643 dync1h1 "dynein, cytoplasmic 1 0.969 0.088 0.565 4.7e-125
FB|FBgn0261797 Dhc64C "Dynein heavy chain 64C" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1613 (572.9 bits), Expect = 6.4e-164, P = 6.4e-164
 Identities = 306/430 (71%), Positives = 356/430 (82%)

Query:     1 MGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVAN 60
             MGRTNLPPEK+PW+AL+TLLSQSIYGGKIDNDFDQRLL SFL KLFT RSFEADFALVAN
Sbjct:  4212 MGRTNLPPEKVPWDALVTLLSQSIYGGKIDNDFDQRLLTSFLKKLFTARSFEADFALVAN 4271

Query:    61 VDGAT---RHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKL 117
             VDGA+   RHI MPDGTRRDHFL WIE+L DRQTPSWLGLPN+AEKVLLTTRGTDLV+KL
Sbjct:  4272 VDGASGGLRHITMPDGTRRDHFLKWIENLTDRQTPSWLGLPNNAEKVLLTTRGTDLVSKL 4331

Query:   118 LKMQQLEDEDEFAYT--EANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRT 175
             LKMQQLED+DE AY+  + +E     R  DGRP+WM+TLHNSA+ WLELLPK LQ L+RT
Sbjct:  4332 LKMQQLEDDDELAYSVEDQSEQSAVGRGEDGRPSWMKTLHNSATAWLELLPKNLQVLKRT 4391

Query:   176 VENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLP 235
             VENIKDPLYRYFEREV+SG+ LL+ VI DL+DV+LIC G K+QTN+HR +LS+LV+G++P
Sbjct:  4392 VENIKDPLYRYFEREVTSGSRLLQTVILDLQDVVLICQGEKKQTNHHRSMLSELVRGIIP 4451

Query:   236 ARWCRYSVPRGCTVIQWVTDFXXXXXXXXXXXXXXXXGGAKELKVYPVWLGGLFNPEAYI 295
               W RY+VP GCTVIQW+TDF                 GAKEL+ +PVWLGGL NPEAYI
Sbjct:  4452 KGWKRYTVPAGCTVIQWITDFSNRVQQLQKVSQLVSQAGAKELQGFPVWLGGLLNPEAYI 4511

Query:   296 TATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLT 355
             TATRQC+A+AN WSLEEL LDV+ITD     K +  DC F V GLKLQGAQC+NNEL+L 
Sbjct:  4512 TATRQCVAQANSWSLEELALDVTITDA--GLKNDQKDCCFGVTGLKLQGAQCKNNELLLA 4569

Query:   356 STILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRG 415
             STI+MDLPVT+++W+K+ SE R  KL+LPVYLNSTRTELLF VDL + +GQ+ HSFY+RG
Sbjct:  4570 STIMMDLPVTILKWIKISSEPRISKLTLPVYLNSTRTELLFTVDLAVAAGQESHSFYERG 4629

Query:   416 VALLTSTSLN 425
             VA+LTST+LN
Sbjct:  4630 VAVLTSTALN 4639
GO:0005875 "microtubule associated complex" evidence=NAS;IDA
GO:0007018 "microtubule-based movement" evidence=ISS;NAS;IDA
GO:0042623 "ATPase activity, coupled" evidence=ISS;NAS;IDA
GO:0003777 "microtubule motor activity" evidence=IDA
GO:0048477 "oogenesis" evidence=IMP;NAS
GO:0007294 "germarium-derived oocyte fate determination" evidence=IMP;TAS
GO:0005868 "cytoplasmic dynein complex" evidence=ISS
GO:0003774 "motor activity" evidence=ISS
GO:0045169 "fusome" evidence=TAS
GO:0045478 "fusome organization" evidence=TAS
GO:0048134 "germ-line cyst formation" evidence=TAS
GO:0005938 "cell cortex" evidence=IDA
GO:0007405 "neuroblast proliferation" evidence=IMP
GO:0016319 "mushroom body development" evidence=IMP
GO:0008088 "axon cargo transport" evidence=IMP
GO:0048813 "dendrite morphogenesis" evidence=IMP
GO:0007301 "female germline ring canal formation" evidence=TAS
GO:0045172 "germline ring canal" evidence=TAS
GO:0007098 "centrosome cycle" evidence=IMP
GO:0008298 "intracellular mRNA localization" evidence=TAS
GO:0005737 "cytoplasm" evidence=IDA;NAS
GO:0007312 "oocyte nucleus migration involved in oocyte dorsal/ventral axis specification" evidence=TAS
GO:0040001 "establishment of mitotic spindle localization" evidence=TAS
GO:0005524 "ATP binding" evidence=IEA
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0043148 "mitotic spindle stabilization" evidence=IMP
GO:0007067 "mitosis" evidence=IMP
GO:0046604 "positive regulation of mitotic centrosome separation" evidence=IMP
GO:0051642 "centrosome localization" evidence=IMP
GO:0030723 "ovarian fusome organization" evidence=IMP
GO:0007282 "cystoblast division" evidence=IMP
GO:0051237 "maintenance of RNA location" evidence=IDA
GO:0034501 "protein localization to kinetochore" evidence=IMP
GO:0007051 "spindle organization" evidence=IMP
GO:0051683 "establishment of Golgi localization" evidence=IMP
GO:0007349 "cellularization" evidence=IMP
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0047497 "mitochondrion transport along microtubule" evidence=IMP
GO:0005739 "mitochondrion" evidence=IDA
GO:0006886 "intracellular protein transport" evidence=IMP
GO:0048311 "mitochondrion distribution" evidence=IMP
GO:0000776 "kinetochore" evidence=IDA
GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IMP
GO:0050658 "RNA transport" evidence=IMP
GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IMP
GO:0040003 "chitin-based cuticle development" evidence=IGI
GO:0045198 "establishment of epithelial cell apical/basal polarity" evidence=IDA
GO:0030529 "ribonucleoprotein complex" evidence=IDA
GO:2001019 "positive regulation of retrograde axon cargo transport" evidence=IMP
GO:0030286 "dynein complex" evidence=IPI
GO:0007279 "pole cell formation" evidence=IMP
GO:0035011 "melanotic encapsulation of foreign target" evidence=IMP
UNIPROTKB|E1BDX8 DYNC1H1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:103147 Dync1h1 "dynein cytoplasmic 1 heavy chain 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q14204 DYNC1H1 "Cytoplasmic dynein 1 heavy chain 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGY9 DYNC1H1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1LRT9 Dync1h1 "Cytoplasmic dynein 1 heavy chain 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NVQ7 DYNC1H1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NKL4 DYNC1H1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|2511 Dync1h1 "dynein cytoplasmic 1 heavy chain 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-7050 dync1h1 "dynein, cytoplasmic 1, heavy chain 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q14204DYHC1_HUMANNo assigned EC number0.59140.97880.0895yesN/A
Q9JHU4DYHC1_MOUSENo assigned EC number0.58900.97880.0895yesN/A
P38650DYHC1_RATNo assigned EC number0.58430.97880.0895yesN/A
P37276DYHC_DROMENo assigned EC number0.73480.99520.0911yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query425
pfam03028706 pfam03028, Dynein_heavy, Dynein heavy chain and re 1e-111
>gnl|CDD|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein motor Back     alignment and domain information 
 Score =  343 bits (881), Expect = e-111
 Identities = 125/416 (30%), Positives = 192/416 (46%), Gaps = 27/416 (6%)

Query: 8   PEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRH 67
           P+K+PW  L  L  + +YGG+I +D+D+RLL ++L + FT R F+ +  L     G    
Sbjct: 312 PDKVPWEDLRYLFGEIMYGGRITDDWDRRLLRTYLEEFFTPRLFDPELELAPGDLG---- 367

Query: 68  INMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDED 127
             +P GT  + +L +IE LP   +P W GL  +AE   LT +   L+  LL++Q  E   
Sbjct: 368 FAVPPGTDYEGYLQYIEELPPESSPEWYGLHPNAEIGFLTQQTEKLIRTLLELQPREAGG 427

Query: 128 EFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYF 187
                 + E        +     +R +        +L P     L+RT E IKDPL+R  
Sbjct: 428 SGGSGVSRE--------EVVKQVLRDIL---EKLPKLFPIEEIKLKRT-EEIKDPLFRVL 475

Query: 188 EREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGC 247
            +E+     LL+++   L+++ L   G    TN    L   L KG +PA W + + P   
Sbjct: 476 FQEIERMNKLLKEIRRSLKELDLGLKGELTMTNDLEDLAKALFKGRVPASWAKLAYPSLK 535

Query: 248 TVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANG 307
            +  WVTD   RI QLQ  +           K   VWL G FNP++++TA  Q +A  N 
Sbjct: 536 PLGSWVTDLLRRIRQLQDWT-------EDFGKPKTVWLSGFFNPQSFLTAIMQSVARKNK 588

Query: 308 WSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDL----P 363
           W L++L L   +T   + E  +     F V GL L+GA+      +L  +   +L    P
Sbjct: 589 WPLDKLCLQTDVTKKEKEEFDSAPRDGFYVHGLFLEGARWDGQNGLLLESRPKELFSPMP 648

Query: 364 VTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGVALL 419
           V  V+ V  + +  +     PVY   TR    +     + + + P  +   GVALL
Sbjct: 649 VIWVKAVPADKQEEKSVYECPVYKTETRGGTTYVFTFLLKTKEPPSKWILAGVALL 704

This family represents the C-terminal region of dynein heavy chain. The chain also contains ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. Dynein is also involved in cilia and flagella movement. The dynein subunit consists of at least two heavy chains and a number of intermediate and light chains. The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This C-terminal domain carries the D6 region of the dynein motor where the P-loop has been lost in evolution but the general structure of a potential ATP binding site appears to be retained. Length = 706

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 425
PF03028707 Dynein_heavy: Dynein heavy chain and region D6 of 100.0
COG52453164 DYN1 Dynein, heavy chain [Cytoskeleton] 96.84
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella Back     alignment and domain information 
Probab=100.00  E-value=1.1e-77  Score=642.77  Aligned_cols=387  Identities=31%  Similarity=0.574  Sum_probs=256.1

Q ss_pred             CCCCChHHHHHHhhhccccCccCCHhHHHHHHHHHHHhcCccccCCCceeeeccCCCcccccCCCCCChHHHHHHHHhCC
Q psy16636          8 PEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLP   87 (425)
Q Consensus         8 ~~~ipw~~l~~li~~~~YGGrv~d~~D~r~L~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~i~~lP   87 (425)
                      +++|||++|||++++++|||||+|+||+|+|++|+++||++++++++|.+++.    ...+.+|.+.++++|.+||++||
T Consensus       312 ~~~ipw~~l~~l~~~i~YGGrv~d~~D~r~l~~~~~~~f~~~~~~~~~~l~~~----~~~~~~P~~~~~~~~~~~i~~lp  387 (707)
T PF03028_consen  312 PESIPWDALRYLIGEIVYGGRVDDEWDRRLLNTLLNQFFNPEIFDPDFQLSPD----SGSYSIPDSNSLEDYIEWIEQLP  387 (707)
T ss_dssp             CCCTTHHHHHHHHHHTTTTTT-SSHHHHHHHHHHHHHHSSGGGGSTT-EEET-----TTTEE----SSHHHHHHHHCTS-
T ss_pred             ccCCcHHHHHHHhhhceecCeeccHHHHHHHHHHHHHHcCchhhcchhhcccC----CCCccCCccccHHHHHHHHHhCC
Confidence            68899999999999999999999999999999999999999999999999862    24789999999999999999999


Q ss_pred             CCCCCccccCChhHHHHHHHHHHHHHHHHHHhhccccccchhhhccccccccccccCCCchhhHHHHHHHHHHHHHHChH
Q psy16636         88 DRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPK  167 (425)
Q Consensus        88 ~~~~p~~~GL~~na~~~~~~~~~~~~l~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~  167 (425)
                      +.|+|+|||||+||++.+++.++++++++|+.+++.......    +..           ....+.+...+.++++.+|.
T Consensus       388 ~~~~p~~~GL~~na~~~~~~~~s~~ll~~l~~l~~~~~~~~~----~~~-----------~s~~~~~~~~i~~l~~~lp~  452 (707)
T PF03028_consen  388 DEDPPEWFGLPPNAEISLQQQESRELLSSLLSLQPRESSSSG----GSS-----------KSREEQVLSLIKELLEKLPQ  452 (707)
T ss_dssp             SS--CCCCTS-TTHHHHHHHHHHHHHHHHHHHCCCTTT-------------------------HHHHCT-----------
T ss_pred             CCCCccccCCCccHHHHHHHHHHHHHHhhhhhcccccccccc----ccc-----------ccchhHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999987653210    000           01124566677788888887


Q ss_pred             HHHHHH--h--hhccCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCchhhhhccC
Q psy16636        168 ALQTLR--R--TVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSV  243 (425)
Q Consensus       168 ~~~~~~--~--~~~~~~~pl~~fl~~E~~~~n~Ll~~I~~sL~~l~~~~~G~~~~t~~l~~~~~~L~~~~VP~~W~~~~~  243 (425)
                      .++...  .  ......+|+.+|+.||++++|+|++.|+++|++|.++++|.+.||+++++++.+|..|+||+.|.+++|
T Consensus       453 ~~~~~~~~~~~~~~~~~~Pl~~fl~qE~~~~~~LL~~I~~sL~~L~~~lkG~~~~t~~l~~l~~~L~~~~VP~~W~~~~~  532 (707)
T PF03028_consen  453 LFPIEEVKSKRPAENSNDPLNRFLEQEIERFNKLLQIIRQSLQELQKALKGEIKMTNELEALAQSLLKGQVPKSWLRYSY  532 (707)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTS--GGG--S--
T ss_pred             cCCHHHHhccCCccccCCceeeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhCCCChhHHhcCC
Confidence            664321  1  123568999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccceEEcCCCCChhHHHHHHHHHHHHHhCcccceeEEEEEEeecC
Q psy16636        244 PRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCM  323 (425)
Q Consensus       244 p~~~~l~~wi~dL~~R~~~l~~w~~~~~~~g~~~~~~~~~~L~~ff~P~~fLtA~~Q~~Ar~~~~~ld~L~l~~~v~~~~  323 (425)
                      |+.+++.+|++||.+|++|++.|...   .|    .|.+||||+||||++||||+||++||++++|+|+|+|.++|.+..
T Consensus       533 ~s~~~l~~Wl~dL~~Rv~~l~~w~~~---~~----~p~~~wLs~ff~P~aFLtAlrQ~~AR~~~~~ld~L~l~~~v~~~~  605 (707)
T PF03028_consen  533 PSPKPLSSWLQDLIKRVEQLQRWASN---SG----QPKSFWLSGFFNPQAFLTALRQEYARKNKIPLDQLTLSFEVTSSE  605 (707)
T ss_dssp             -SS--HHHHHHHHHHHHHHHHHHHH--------------B-GGGSS-HHHHHHHHHHHHHHHTT-----EE--EE-----
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhc---cC----CceEEecccccChHHHHHHHHHHHHHhcCcCchhcceeEEEEecc
Confidence            99999999999999999999999984   14    789999999999999999999999999999999999999998754


Q ss_pred             CCCcC-CCCCceEEEeeEEEeeeeecCCceeecc----cccCCCCeeEEEEEEccccCCCCceeeeEeecCCCCCeEEEE
Q psy16636        324 EPEKI-NTDDCSFRVVGLKLQGAQCRNNELVLTS----TILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNV  398 (425)
Q Consensus       324 ~~~~~-~~~~g~~~i~GL~LeGA~wd~~~~~l~~----~~~~~lP~i~i~~~~~~~~~~~~~y~cPlY~t~~R~~~l~~~  398 (425)
                      .++.. .++.| ++|+||+||||+||.+..++.+    ..+..||++|++|+........+.|.||||+|+.|++.++++
T Consensus       606 ~~~~~~~~~~g-~~I~GL~leGA~wd~~~~~l~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~y~~PvY~~~~R~~~~~v~  684 (707)
T PF03028_consen  606 DENIRSPPEDG-VYIHGLFLEGARWDGQKGCLEESSPKSLYPPMPVIWLKPVQASPQSSDNSYECPVYKTSSREGLNFVF  684 (707)
T ss_dssp             ---------EE-EEE-SEEEESSEEET-TCEE--SSSEEEES-EEEE-EE-----TTCGGCSEEEEEESSTT--S--EEE
T ss_pred             ccccccccccc-eEEEeEEecccEeccccCcccCCCcccccccCceeEeccccccccCCCCEEECCceecCcCCCCeEEE
Confidence            33222 23455 5699999999999987655544    268899999999987644446678999999999999988888


Q ss_pred             EEEcCCCCCCCeEEEcceeeccc
Q psy16636        399 DLNITSGQDPHSFYQRGVALLTS  421 (425)
Q Consensus       399 ~l~l~~~~~~~~Wi~rGval~~~  421 (425)
                      .|++|++.++++||+|||||+||
T Consensus       685 ~l~l~~~~~~~~Wi~rGvAl~lq  707 (707)
T PF03028_consen  685 SLPLPTDEDPDHWILRGVALLLQ  707 (707)
T ss_dssp             EEEE-B-T-HHHHHTTT-EEES-
T ss_pred             EEEcCCCCCHHHHHHHhHHHhcC
Confidence            88888988999999999999996

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query425
3vkh_A3367 X-Ray Structure Of A Functional Full-Length Dynein 4e-83
3vkg_A3245 X-Ray Structure Of An Mtbd Truncation Mutant Of Dyn 5e-83
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor Domain Length = 3367 Back     alignment and structure 
Iteration: 1

 Score =  305 bits (780), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 167/422 (39%), Positives = 246/422 (58%), Gaps = 23/422 (5%)
Query: 2    GRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANV 61
            GR+N+ P+KIPW A+ T+L  +IYGG+IDN+FD RLL SFL +LFT  +F  DF LV ++
Sbjct: 2957 GRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPSI 3016
Query: 62   DGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQ 121
                  +++P+GT R HF+ WIE+LP+  TP WLGLP +AE +LL+ +   ++  L KMQ
Sbjct: 3017 G-----LSVPEGTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQ 3071
Query: 122  QLED--EDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENI 179
              E+  ED+     + +  +   + D   A +R    + + W +LLPK L+ L+RT +NI
Sbjct: 3072 SSEEDGEDDQVSGSSKKESSSSSSEDKGKAKLRA---TITEWTKLLPKPLKQLKRTTQNI 3128
Query: 180  KDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWC 239
            KDPL+R FERE+S+G  L++ + +DL +++ + SG  + TNY R L + + KG++P  W 
Sbjct: 3129 KDPLFRCFEREISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLTTSISKGIVPKEWK 3188
Query: 240  RYSVPRGCTVIQWVTDFXXXXXXXXXXXXXXXXGGAKELKVYPVWLGGLFNPEAYITATR 299
             YSVP   ++  W++DF                   +      VWLGGL NPEAYITATR
Sbjct: 3189 WYSVPETISLSVWISDFSKRMQQLSEISESSDYSSIQ------VWLGGLLNPEAYITATR 3242
Query: 300  QCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTIL 359
            Q  ++ NGWSLE L L  S    +  E       SF V G+ L+GA   N++L  T  + 
Sbjct: 3243 QSASQLNGWSLENLRLHASSLGKISSE----GGASFNVKGMALEGAVWNNDQLTPTDILS 3298
Query: 360  MDLPVTLVRWVKVES---ETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGV 416
              + +  + W   +         KLS+PVYLN TR+ELLF++DL         ++YQR V
Sbjct: 3299 TPISIATLTWKDKDDPIFNNSSSKLSVPVYLNETRSELLFSIDLPYDQSTSKQNWYQRSV 3358
Query: 417  AL 418
            ++
Sbjct: 3359 SI 3360
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor Domain Length = 3245 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query425
3vkg_A3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 1e-111
4akg_A2695 Glutathione S-transferase class-MU 26 kDa isozyme 5e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
 Score =  357 bits (918), Expect = e-111
 Identities = 170/425 (40%), Positives = 252/425 (59%), Gaps = 19/425 (4%)

Query: 2    GRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANV 61
            GR+N+ P+KIPW A+ T+L  +IYGG+IDN+FD RLL SFL +LFT  +F  DF LV ++
Sbjct: 2835 GRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPSI 2894

Query: 62   DGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQ 121
                  +++P+GT R HF+ WIE+LP+  TP WLGLP +AE +LL+ +   ++  L KMQ
Sbjct: 2895 G-----LSVPEGTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQ 2949

Query: 122  QLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKD 181
              E++ E        +K E  +          L  + + W +LLPK L+ L+RT +NIKD
Sbjct: 2950 SSEEDGEDDQVSG-SSKKESSSSSSEDKGKAKLRATITEWTKLLPKPLKQLKRTTQNIKD 3008

Query: 182  PLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRY 241
            PL+R FERE+S+G  L++ + +DL +++ + SG  + TNY R L + + KG++P  W  Y
Sbjct: 3009 PLFRCFEREISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLTTSISKGIVPKEWKWY 3068

Query: 242  SVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQC 301
            SVP   ++  W++DF  R+ QL ++S       + +     VWLGGL NPEAYITATRQ 
Sbjct: 3069 SVPETISLSVWISDFSKRMQQLSEIS------ESSDYSSIQVWLGGLLNPEAYITATRQS 3122

Query: 302  IAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMD 361
             ++ NGWSLE L L  S    +  E       SF V G+ L+GA   N++L  T  +   
Sbjct: 3123 ASQLNGWSLENLRLHASSLGKISSE----GGASFNVKGMALEGAVWNNDQLTPTDILSTP 3178

Query: 362  LPVTLVRWVKVESETRQDK---LSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGVAL 418
            + +  + W   +     +    LS+PVYLN TR+ELLF++DL         ++YQR V++
Sbjct: 3179 ISIATLTWKDKDDPIFNNSSSKLSVPVYLNETRSELLFSIDLPYDQSTSKQNWYQRSVSI 3238

Query: 419  LTSTS 423
             +  S
Sbjct: 3239 SSWKS 3243
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query425
3vkg_A3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 100.0
4akg_A2695 Glutathione S-transferase class-MU 26 kDa isozyme 99.78
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
Probab=100.00  E-value=3.1e-83  Score=747.49  Aligned_cols=404  Identities=42%  Similarity=0.768  Sum_probs=282.9

Q ss_pred             CCCCCCCCCCCChHHHHHHhhhccccCccCCHhHHHHHHHHHHHhcCccccCCCceeeeccCCCcccccCCCCCChHHHH
Q psy16636          1 MGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFL   80 (425)
Q Consensus         1 ~~~~~i~~~~ipw~~l~~li~~~~YGGrv~d~~D~r~L~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~   80 (425)
                      .||+||++++|||++|||++|+|+|||||||+||||+|++|+++||++++++++|.++++     ..|.+|++.++++|+
T Consensus      2834 ~~~~n~~~~~iPw~~L~yl~gei~YGGrVtDd~DrrlL~t~l~~~~~~~~~~~~~~~~~~-----~~~~~P~~~~~~~y~ 2908 (3245)
T 3vkg_A         2834 KGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPS-----IGLSVPEGTTRAHFM 2908 (3245)
T ss_dssp             TTCSCCCTTTSCHHHHHHCCCCCCCSTTCCSSSHHHHHHHHHHHHSSGGGGSSSCEEEGG-----GTEECCCCSSHHHHH
T ss_pred             ccccccCCCCCCHHHHHHHHhhcccCCccCCHHHHHHHHHHHHHHcCHhhcCCcccCCCC-----CCCCCCCCCCHHHHH
Confidence            378999999999999999999999999999999999999999999999999999999863     247799999999999


Q ss_pred             HHHHhCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHhhccccccchhh-hcccccccccc-ccCCCchhhHHHHHHHH
Q psy16636         81 HWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFA-YTEANENKTEE-RNVDGRPAWMRTLHNSA  158 (425)
Q Consensus        81 ~~i~~lP~~~~p~~~GL~~na~~~~~~~~~~~~l~~l~~~q~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~l~~~~  158 (425)
                      +||++||..++|+|||||+||+++++.++++.++++|+.+||..+.++.. +++++...... .++.+++.   .+.+++
T Consensus      2909 ~~I~~LP~~~~P~~fGLh~NA~i~~~~~~s~~l~~~ll~lq~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~v~~~~ 2985 (3245)
T 3vkg_A         2909 KWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQSSEEDGEDDQVSGSSKKESSSSSSEDKGKA---KLRATI 2985 (3245)
T ss_dssp             HHHTTSCSCCCGGGGTSCTTHHHHHHHHHHHHHHHHHHHHHHTTTC---------------CHHHHHHHHH---C-----
T ss_pred             HHHHhCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHHhCCcccccccccccccccccccccccCCCcHH---HHHHHH
Confidence            99999999999999999999999999999999999999999975432110 11111000000 00112333   378889


Q ss_pred             HHHHHHChHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCchhh
Q psy16636        159 STWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARW  238 (425)
Q Consensus       159 ~~~~~~lP~~~~~~~~~~~~~~~pl~~fl~~E~~~~n~Ll~~I~~sL~~l~~~~~G~~~~t~~l~~~~~~L~~~~VP~~W  238 (425)
                      ++|++++|+.++..++......+|+.+||.||+++||+|++.||+||.+|++|++|.++||+++++++.+|+.|+||+.|
T Consensus      2986 ~~~l~~lP~~~~~~~~~~~~~~~pl~~vl~QE~~r~n~Ll~~ir~sL~~L~~aikG~i~mS~~le~l~~sl~~~~VP~~W 3065 (3245)
T 3vkg_A         2986 TEWTKLLPKPLKQLKRTTQNIKDPLFRCFEREISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLTTSISKGIVPKEW 3065 (3245)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------
T ss_pred             HHHHHhCccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCCcCCHHHHHHHHHHHcCCCchhh
Confidence            99999999988765555556679999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccceEEcCCCCChhHHHHHHHHHHHHHhCcccceeEE-EE
Q psy16636        239 CRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVL-DV  317 (425)
Q Consensus       239 ~~~~~p~~~~l~~wi~dL~~R~~~l~~w~~~~~~~g~~~~~~~~~~L~~ff~P~~fLtA~~Q~~Ar~~~~~ld~L~l-~~  317 (425)
                      .+++||+.++|++|++||.+|++|++.|...    |  ...|.+|||||||||++||||+||++||+++||+|+|.| +|
T Consensus      3066 ~~~syps~k~L~~W~~dL~~R~~~l~~W~~~----~--~~~p~~~WLsgff~Pq~FLTA~~Q~~ARk~~~plD~l~l~~~ 3139 (3245)
T 3vkg_A         3066 KWYSVPETISLSVWISDFSKRMQQLSEISES----S--DYSSIQVWLGGLLNPEAYITATRQSASQLNGWSLENLRLHAS 3139 (3245)
T ss_dssp             CCSCCCSSCCHHHHHHHHHHHHHHHHHHHHC-------------CCGGGSSCHHHHHHHHHHHHHHHTC------CCCBC
T ss_pred             hcccCCCCCCHHHHHHHHHHHHHHHHHHHhc----C--CCCCceEecCCCcchHHHHHHHHHHHHHHhCCCCccceeeeE
Confidence            9999999999999999999999999999972    2  137899999999999999999999999999999999999 99


Q ss_pred             EEeecCCCCcCCCCCceEEEeeEEEeeeeecCCceeecccccCCCCeeEEEEEEccccC---CCCceeeeEeecCCCCCe
Q psy16636        318 SITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESET---RQDKLSLPVYLNSTRTEL  394 (425)
Q Consensus       318 ~v~~~~~~~~~~~~~g~~~i~GL~LeGA~wd~~~~~l~~~~~~~lP~i~i~~~~~~~~~---~~~~y~cPlY~t~~R~~~  394 (425)
                      +|++.   +. .|++|+| |+|||||||+||.++++++++.++.||+++++|++....+   ..+.|.||||+|+.|+++
T Consensus      3140 ~V~~~---~~-~p~~G~y-I~GL~LeGA~WD~~~~~l~e~~~~~lPvi~l~~~~~~~~~~~~~~~~y~cPvYkt~~R~~~ 3214 (3245)
T 3vkg_A         3140 SLGKI---SS-EGGASFN-VKGMALEGAVWNNDQLTPTDILSTPISIATLTWKDKDDPIFNNSSSKLSVPVYLNETRSEL 3214 (3245)
T ss_dssp             --------------CCEE-ECSCEEESCEECSSSEECCSSSEEECCCEEECCCC---CCTTSGGGEEEEEEESSTTCCCE
T ss_pred             EEecC---CC-CCCceEE-EeCEEEeccEecCCCceecCcccCCCCceeEEEeecccccccCCCCeEEcceEecCCCCCE
Confidence            98752   11 2678876 9999999999999999999988999999999998754332   245699999999999999


Q ss_pred             EEEEEEEcCCCCCCCeEEEcceeecccCC
Q psy16636        395 LFNVDLNITSGQDPHSFYQRGVALLTSTS  423 (425)
Q Consensus       395 l~~~~l~l~~~~~~~~Wi~rGval~~~~~  423 (425)
                      ++++.++++++.+|+|||+|||||+|+++
T Consensus      3215 l~~~~l~~~t~~~~~~Wi~rGVALl~~~~ 3243 (3245)
T 3vkg_A         3215 LFSIDLPYDQSTSKQNWYQRSVSISSWKS 3243 (3245)
T ss_dssp             EEEEEEEBCTTSCHHHHHTTTCEEESCCC
T ss_pred             EEEEEEECCCCCCHhHHHHHHHHHHcCCc
Confidence            99999999999999999999999999975
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00