Psyllid ID: psy16660
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 594 | 2.2.26 [Sep-21-2011] | |||||||
| Q96MC6 | 490 | Hippocampus abundant tran | yes | N/A | 0.700 | 0.848 | 0.595 | 1e-152 | |
| P70187 | 490 | Hippocampus abundant tran | yes | N/A | 0.700 | 0.848 | 0.595 | 1e-152 | |
| Q8CIA9 | 507 | Hippocampus abundant tran | no | N/A | 0.720 | 0.844 | 0.555 | 1e-150 | |
| Q5SR56 | 506 | Hippocampus abundant tran | no | N/A | 0.722 | 0.847 | 0.574 | 1e-148 | |
| A4IF94 | 502 | Hippocampus abundant tran | no | N/A | 0.722 | 0.854 | 0.567 | 1e-146 | |
| B2RYH9 | 507 | Hippocampus abundant tran | no | N/A | 0.725 | 0.850 | 0.550 | 1e-144 | |
| Q5VZR4 | 134 | Hippocampus abundant tran | no | N/A | 0.156 | 0.694 | 0.741 | 4e-34 | |
| P02982 | 399 | Tetracycline resistance p | yes | N/A | 0.553 | 0.824 | 0.240 | 2e-14 | |
| P02981 | 396 | Tetracycline resistance p | yes | N/A | 0.538 | 0.808 | 0.246 | 3e-13 | |
| P51563 | 393 | Tetracycline resistance p | yes | N/A | 0.420 | 0.636 | 0.245 | 2e-08 |
| >sp|Q96MC6|HIAT1_HUMAN Hippocampus abundant transcript 1 protein OS=Homo sapiens GN=HIAT1 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 540 bits (1392), Expect = e-152, Method: Compositional matrix adjust.
Identities = 288/484 (59%), Positives = 349/484 (72%), Gaps = 68/484 (14%)
Query: 92 SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSA 151
GIG PSVYHA++VIFLEFFAWGLLT P + VL+ TFP HTFLMNGLI G+KG LSFLSA
Sbjct: 30 QGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSA 89
Query: 152 PLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVAD 211
PLIGALSD+WGRK FLL+TVF
Sbjct: 90 PLIGALSDVWGRKSFLLLTVF--------------------------------------- 110
Query: 212 VTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHER 271
F I LM + WW+FA+IS+SGVFAVTFSVVFAYVAD+T+EHER
Sbjct: 111 --------------FTCAPIPLMKISPWWYFAVISVSGVFAVTFSVVFAYVADITQEHER 156
Query: 272 SLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVP 331
S+AYGL VSATFAAS+V SPA+GAYL + Y SLVV +ATA+A+LD+ FILVAVP
Sbjct: 157 SMAYGL------VSATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFILVAVP 210
Query: 332 ESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFV 391
ESLPEK+R ASWG APISWEQADPFASL+KVG+D +L++C+TVFLSYLPEAGQYS F+
Sbjct: 211 ESLPEKMRPASWG-APISWEQADPFASLKKVGQDSIVLLICITVFLSYLPEAGQYSSFFL 269
Query: 392 YLKLVMGFDEVHVAVFIAVIGTLSVSAQ-IILGCLMNVLGAKHTIIIGLVFEMLQLMWYG 450
YL+ +M F VA FIAV+G LS+ AQ I+L LM +G K+TI++GL F++LQL WYG
Sbjct: 270 YLRQIMKFSPESVAAFIAVLGILSIIAQTIVLSLLMRSIGNKNTILLGLGFQILQLAWYG 329
Query: 451 FGSQMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMF 510
FGS+ WMMWAAG +A+++SIT+PA+SALVS +DAD+QG+VQGM+TG+RGLCNGLGPA++
Sbjct: 330 FGSEPWMMWAAGAVAAMSSITFPAVSALVSRTADADQQGVVQGMITGIRGLCNGLGPALY 389
Query: 511 GLIFYMFHVDLSD----GPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVAT 566
G IFY+FHV+L + G D+G T N S+IPGPPF+FGA V+ ALLVA
Sbjct: 390 GFIFYIFHVELKELPITGTDLGTNTSPQHHFEQN---SIIPGPPFLFGACSVLLALLVAL 446
Query: 567 FIPE 570
FIPE
Sbjct: 447 FIPE 450
|
Homo sapiens (taxid: 9606) |
| >sp|P70187|HIAT1_MOUSE Hippocampus abundant transcript 1 protein OS=Mus musculus GN=Hiat1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 540 bits (1392), Expect = e-152, Method: Compositional matrix adjust.
Identities = 288/484 (59%), Positives = 349/484 (72%), Gaps = 68/484 (14%)
Query: 92 SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSA 151
GIG PSVYHA++VIFLEFFAWGLLT P + VL+ TFP HTFLMNGLI G+KG LSFLSA
Sbjct: 30 QGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSA 89
Query: 152 PLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVAD 211
PLIGALSD+WGRK FLL+TVF
Sbjct: 90 PLIGALSDVWGRKSFLLLTVF--------------------------------------- 110
Query: 212 VTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHER 271
F I LM + WW+FA+IS+SGVFAVTFSVVFAYVAD+T+EHER
Sbjct: 111 --------------FTCAPIPLMKISPWWYFAVISVSGVFAVTFSVVFAYVADITQEHER 156
Query: 272 SLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVP 331
S+AYGL VSATFAAS+V SPA+GAYL + Y SLVV +ATA+A+LD+ FILVAVP
Sbjct: 157 SMAYGL------VSATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFILVAVP 210
Query: 332 ESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFV 391
ESLPEK+R ASWG APISWEQADPFASL+KVG+D +L++C+TVFLSYLPEAGQYS F+
Sbjct: 211 ESLPEKMRPASWG-APISWEQADPFASLKKVGQDSIVLLICITVFLSYLPEAGQYSSFFL 269
Query: 392 YLKLVMGFDEVHVAVFIAVIGTLSVSAQ-IILGCLMNVLGAKHTIIIGLVFEMLQLMWYG 450
YL+ +M F VA FIAV+G LS+ AQ I+L LM +G K+TI++GL F++LQL WYG
Sbjct: 270 YLRQIMKFSPESVAAFIAVLGILSIIAQTIVLSLLMRSIGNKNTILLGLGFQILQLAWYG 329
Query: 451 FGSQMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMF 510
FGS+ WMMWAAG +A+++SIT+PA+SALVS +DAD+QG+VQGM+TG+RGLCNGLGPA++
Sbjct: 330 FGSEPWMMWAAGAVAAMSSITFPAVSALVSRTADADQQGVVQGMITGIRGLCNGLGPALY 389
Query: 511 GLIFYMFHVDLSD----GPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVAT 566
G IFY+FHV+L + G D+G T N S+IPGPPF+FGA V+ ALLVA
Sbjct: 390 GFIFYIFHVELKELPITGTDLGTNTSPQHHFEQN---SIIPGPPFLFGACSVLLALLVAL 446
Query: 567 FIPE 570
FIPE
Sbjct: 447 FIPE 450
|
Mus musculus (taxid: 10090) |
| >sp|Q8CIA9|HIAL1_MOUSE Hippocampus abundant transcript-like protein 1 OS=Mus musculus GN=Hiatl1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 531 bits (1367), Expect = e-150, Method: Compositional matrix adjust.
Identities = 281/506 (55%), Positives = 348/506 (68%), Gaps = 78/506 (15%)
Query: 93 GIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAP 152
G G PSVYHA VIFLEFFAWGLLT P+++VL+ TFP HTFLMNGLI G+KG LSFLSAP
Sbjct: 41 GFGHPSVYHAAFVIFLEFFAWGLLTTPMLTVLHETFPQHTFLMNGLIQGVKGLLSFLSAP 100
Query: 153 LIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADV 212
LIGALSD+WGRK FLL TVF
Sbjct: 101 LIGALSDVWGRKPFLLGTVF---------------------------------------- 120
Query: 213 TEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERS 272
F I LM ++ WW+F MIS+SGVF+VTFSV+FAYVAD T+EHERS
Sbjct: 121 -------------FTCFPIPLMRINPWWYFGMISVSGVFSVTFSVIFAYVADFTQEHERS 167
Query: 273 LAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPE 332
AYG VSATFAAS+V SPA+G YL Y SLVV VAT VA+LD+ FIL+AVPE
Sbjct: 168 TAYGW------VSATFAASLVSSPAIGTYLSANYGDSLVVLVATLVALLDICFILIAVPE 221
Query: 333 SLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVY 392
SL EK+R ASWG A ISW+QADPFASL+KVGKD T+L++C+TVFLSYLPEAGQYS F+Y
Sbjct: 222 SLSEKIRPASWG-AQISWKQADPFASLKKVGKDSTVLLICITVFLSYLPEAGQYSSFFLY 280
Query: 393 LKLVMGFDEVHVAVFIAVIGTLSVSAQ-IILGCLMNVLGAKHTIIIGLVFEMLQLMWYGF 451
L+ V+GF V + FIA++G LS+ AQ + L LM LG K+T+++GL F+MLQL WYGF
Sbjct: 281 LRQVIGFGSVKIVAFIAMVGILSIVAQTVFLSKLMRSLGNKNTVLLGLGFQMLQLAWYGF 340
Query: 452 GSQMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFG 511
GSQ WMMWAAG +A+++SIT+PA+SAL+S ++++D+QG+ QG+VTG+RGLCNGLGPA++G
Sbjct: 341 GSQAWMMWAAGTVAAMSSITFPAVSALISRNAESDQQGVAQGIVTGIRGLCNGLGPALYG 400
Query: 512 LIFYMFHVDLSD-GPDVGPGTLANRTNNVNSYP---SVIPGPPFVFGALLVIAALLVATF 567
IFYMFHV+LS+ GP + N + P + IPGPPF+FGA +V+ + LVA F
Sbjct: 401 FIFYMFHVELSELGPKL----------NSDDDPLQGAFIPGPPFLFGACIVLMSFLVALF 450
Query: 568 IPESIVTRSVGTTQLRRQSSVGSVAV 593
IPE R Q S+ GS++
Sbjct: 451 IPE---YRKTSGVQKHNNSTSGSLST 473
|
Mus musculus (taxid: 10090) |
| >sp|Q5SR56|HIAL1_HUMAN Hippocampus abundant transcript-like protein 1 OS=Homo sapiens GN=HIATL1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 527 bits (1357), Expect = e-148, Method: Compositional matrix adjust.
Identities = 288/501 (57%), Positives = 355/501 (70%), Gaps = 72/501 (14%)
Query: 93 GIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAP 152
G G PSVYHA +VIFLEFFAWGLLT P+++VL+ TF HTFLMNGLI G+KG LSFLSAP
Sbjct: 39 GFGRPSVYHAAIVIFLEFFAWGLLTTPMLTVLHETFSQHTFLMNGLIQGVKGLLSFLSAP 98
Query: 153 LIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADV 212
LIGALSD+WGRK FLL TVF
Sbjct: 99 LIGALSDVWGRKPFLLGTVF---------------------------------------- 118
Query: 213 TEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERS 272
F I LM + WW+FAMIS+SGVF+VTFSV+FAYVADVT+EHERS
Sbjct: 119 -------------FTCFPIPLMRISPWWYFAMISVSGVFSVTFSVIFAYVADVTQEHERS 165
Query: 273 LAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPE 332
AYG VSATFAAS+V SPA+GAYL +Y SLVV VAT VA+LD+ FILVAVPE
Sbjct: 166 TAYGW------VSATFAASLVSSPAIGAYLSASYGDSLVVLVATVVALLDICFILVAVPE 219
Query: 333 SLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVY 392
SLPEK+R SWG A ISW+QADPFASL+KVGKD T+L++C+TVFLSYLPEAGQYS F+Y
Sbjct: 220 SLPEKMRPVSWG-AQISWKQADPFASLKKVGKDSTVLLICITVFLSYLPEAGQYSSFFLY 278
Query: 393 LKLVMGFDEVHVAVFIAVIGTLSVSAQI-ILGCLMNVLGAKHTIIIGLVFEMLQLMWYGF 451
L+ V+GF V +A FIA++G LS+ AQ L LM LG K+T+++GL F+MLQL WYGF
Sbjct: 279 LRQVIGFGSVKIAAFIAMVGILSIVAQTAFLSILMRSLGNKNTVLLGLGFQMLQLAWYGF 338
Query: 452 GSQMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFG 511
GSQ WMMWAAG +A+++SIT+PAISALVS ++++D+QG+ QG++TG+RGLCNGLGPA++G
Sbjct: 339 GSQAWMMWAAGTVAAMSSITFPAISALVSRNAESDQQGVAQGIITGIRGLCNGLGPALYG 398
Query: 512 LIFYMFHVDLSD-GPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIPE 570
IFYMFHV+L++ GP + +NNV +VIPGPPF+FGA +V+ + LVA FIPE
Sbjct: 399 FIFYMFHVELTELGPKL-------NSNNVPLQGAVIPGPPFLFGACIVLMSFLVALFIPE 451
Query: 571 SIVTRSVGTTQLRRQSSVGSV 591
+++ G Q SS GS+
Sbjct: 452 --YSKASG-VQKHSNSSSGSL 469
|
Homo sapiens (taxid: 9606) |
| >sp|A4IF94|HIAL1_BOVIN Hippocampus abundant transcript-like protein 1 OS=Bos taurus GN=HIATL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 518 bits (1335), Expect = e-146, Method: Compositional matrix adjust.
Identities = 285/502 (56%), Positives = 351/502 (69%), Gaps = 73/502 (14%)
Query: 93 GIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAP 152
G G PSVYHA +VIFLEFFAWGLLT +++VL+ TFP HTFLMNGLI G+KG LSFLSAP
Sbjct: 36 GFGRPSVYHAAIVIFLEFFAWGLLTTSMLTVLHETFPQHTFLMNGLIQGVKGLLSFLSAP 95
Query: 153 LIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADV 212
LIGALSD+WGRK FLL TVF
Sbjct: 96 LIGALSDVWGRKPFLLGTVF---------------------------------------- 115
Query: 213 TEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERS 272
F I LM + WW+FAMISISGVF+VTFSV+FAYVADVT+EHERS
Sbjct: 116 -------------FTCFPIPLMRISPWWYFAMISISGVFSVTFSVIFAYVADVTQEHERS 162
Query: 273 LAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPE 332
AYG VSATFAAS+V SPA+GAYL +Y SLVV VAT VA+LD+ FIL+AVPE
Sbjct: 163 TAYGW------VSATFAASLVSSPAIGAYLSASYGDSLVVLVATVVALLDICFILLAVPE 216
Query: 333 SLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVY 392
SLPEK+R SWG A ISW+QADPFASL+KVGKD TIL++C+TVFLSYLPEAGQYS F+Y
Sbjct: 217 SLPEKMRPLSWG-ARISWKQADPFASLKKVGKDSTILLICITVFLSYLPEAGQYSSFFLY 275
Query: 393 LKLVMGFDEVHVAVFIAVIGTLSVSAQ-IILGCLMNVLGAKHTIIIGLVFEMLQLMWYGF 451
L+ V+GF + +A FIA++G LS+ AQ + L LM LG K+T+++GL F+M QL WYGF
Sbjct: 276 LRQVIGFGSIKIAAFIAMVGILSIVAQTVFLTSLMRSLGNKNTVLLGLGFQMFQLAWYGF 335
Query: 452 GSQMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFG 511
GSQ WMMWAAGI+A+++SIT+PA+S LVS ++D+++QG+ QG++TG+RGLCNGLGPA++G
Sbjct: 336 GSQAWMMWAAGIVAAVSSITFPAVSTLVSQNADSNQQGVAQGIITGIRGLCNGLGPALYG 395
Query: 512 LIFYMFHVDLSD-GPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIPE 570
IFYMFHV+L++ P++ +NN +VIPGPPF+FGA +V + LVA FIPE
Sbjct: 396 FIFYMFHVELTELEPEL-------ISNNAALQGAVIPGPPFLFGACIVFMSFLVAVFIPE 448
Query: 571 SIVTRSVGTTQLRRQSSVGSVA 592
S G Q S GS+A
Sbjct: 449 ----YSKGGIQKHSNSISGSLA 466
|
Bos taurus (taxid: 9913) |
| >sp|B2RYH9|HIAL1_RAT Hippocampus abundant transcript-like protein 1 OS=Rattus norvegicus GN=Hiatl1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 514 bits (1323), Expect = e-144, Method: Compositional matrix adjust.
Identities = 277/503 (55%), Positives = 348/503 (69%), Gaps = 72/503 (14%)
Query: 93 GIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAP 152
G G+PSVYHA VIF EFFAWGLLT P+++VL+ TFP HTFLMNGLI G+KG LSFLSAP
Sbjct: 41 GFGQPSVYHAAFVIFFEFFAWGLLTTPMLTVLHETFPQHTFLMNGLIQGVKGLLSFLSAP 100
Query: 153 LIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADV 212
LIGALSD+WGRK FLL TVF
Sbjct: 101 LIGALSDVWGRKPFLLGTVF---------------------------------------- 120
Query: 213 TEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERS 272
F I LM + WW+F MIS+SGVF+VTFSV+FAYVAD T+EHERS
Sbjct: 121 -------------FTCFPIPLMRISPWWYFGMISVSGVFSVTFSVIFAYVADFTQEHERS 167
Query: 273 LAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPE 332
AYG VSATFAAS+V SPA+G YL Y SLVV VAT VA+LD+ FILVAVPE
Sbjct: 168 TAYGW------VSATFAASLVSSPAIGTYLSSNYGDSLVVLVATVVALLDICFILVAVPE 221
Query: 333 SLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVY 392
SLPEK+R ASWG A ISW+QADPFASL+KVGKD T+L++C+TVFLSYLPEAGQYS F+Y
Sbjct: 222 SLPEKIRPASWG-AQISWKQADPFASLKKVGKDSTVLLICITVFLSYLPEAGQYSSFFLY 280
Query: 393 LKLVMGFDEVHVAVFIAVIGTLSVSAQ-IILGCLMNVLGAKHTIIIGLVFEMLQLMWYGF 451
L+ V+GF V + FIA++G LS+ AQ + L LM LG K+T+++GL F++LQL WYGF
Sbjct: 281 LRQVIGFGSVKIVAFIAMVGILSILAQTVFLSKLMRSLGNKNTVLLGLGFQILQLAWYGF 340
Query: 452 GSQMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFG 511
G+Q WMMWAAG +A+++SIT+PA+SAL+S ++++D+QG+ QG++TG+RGLCNGLGPA++G
Sbjct: 341 GAQAWMMWAAGTVAAMSSITFPAVSALISRNAESDQQGVAQGIITGIRGLCNGLGPALYG 400
Query: 512 LIFYMFHVDLSD-GPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIPE 570
IFY+FHV+L++ GP + ++N + IPGPPF+FGA +V+ + LVA FIPE
Sbjct: 401 FIFYLFHVELNELGPKL-------DSDNDPLQGAFIPGPPFLFGACIVLMSFLVALFIPE 453
Query: 571 SIVTRSVGTTQLRRQSSVGSVAV 593
R G Q S GS++
Sbjct: 454 ---YRKTGGVQKHNNSISGSLST 473
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q5VZR4|HIAL2_HUMAN Hippocampus abundant transcript-like protein 2 OS=Homo sapiens GN=HIATL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 77/93 (82%)
Query: 92 SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSA 151
G G PSVYHA +VIFLEFFAWGLLT P+++VL+ TF HTFLMNGLI G+KG LSFLSA
Sbjct: 38 QGFGPPSVYHAAIVIFLEFFAWGLLTTPMLTVLHETFSQHTFLMNGLIQGVKGLLSFLSA 97
Query: 152 PLIGALSDLWGRKLFLLITVFVTCLPIPLMTLD 184
PLIGALSD+WGRK FLL TVF TC PIPLM +
Sbjct: 98 PLIGALSDVWGRKPFLLGTVFFTCFPIPLMRIS 130
|
Homo sapiens (taxid: 9606) |
| >sp|P02982|TCR1_ECOLX Tetracycline resistance protein, class A OS=Escherichia coli GN=tetA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 98/407 (24%), Positives = 171/407 (42%), Gaps = 78/407 (19%)
Query: 116 LTMPIISVLNRTF--PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 173
L MP++ L R + G+++ + + F AP++GALSD +GR+ LL
Sbjct: 23 LIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLL----- 77
Query: 174 TCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIIL 233
+S++G +V +A +A F+
Sbjct: 78 ------------------VSLAGA-----AVDYAIMATA------------PFL------ 96
Query: 234 MTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMV 293
W + ++G+ T +V AY+AD+T+ ER+ +G +SA F MV
Sbjct: 97 -----WVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGF------MSACFGFGMV 145
Query: 294 FSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQA 353
P LG L +S A A+ L+ +PES + R P+ E
Sbjct: 146 AGPVLGG-LMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERR-------PLRREAL 197
Query: 354 DPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVH-----VAVFI 408
+P AS R + T++ + VF + GQ L ++ G D H + + +
Sbjct: 198 NPLASFRWA-RGMTVVAALMAVFF-IMQLVGQVPA---ALWVIFGEDRFHWDATTIGISL 252
Query: 409 AVIGTLSVSAQ-IILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASL 467
A G L AQ +I G + LG + +++G++ + + F ++ WM + +L +
Sbjct: 253 AAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLAS 312
Query: 468 ASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIF 514
I PA+ A++S D +RQG +QG + + L + +GP +F I+
Sbjct: 313 GGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIY 359
|
Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter. Escherichia coli (taxid: 562) |
| >sp|P02981|TCR3_ECOLX Tetracycline resistance protein, class C OS=Escherichia coli GN=tetA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 99/402 (24%), Positives = 164/402 (40%), Gaps = 82/402 (20%)
Query: 116 LTMPIISVLNRTF--PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 173
L MP++ L R D G+++ + + FL AP++GALSD +GR+ LL ++
Sbjct: 23 LVMPVLPGLLRDIVHSDSIASHYGVLLALYALMQFLCAPVLGALSDRFGRRPVLLASLLG 82
Query: 174 TCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIIL 233
T+D +A+++ + V
Sbjct: 83 A-------TID----YAIMATTPVL----------------------------------- 96
Query: 234 MTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMV 293
W +A ++G+ T +V AY+AD+T+ +R+ +GL +SA F MV
Sbjct: 97 -----WILYAGRIVAGITGATGAVAGAYIADITDGEDRARHFGL------MSACFGVGMV 145
Query: 294 FSPALGAYLEKT--YSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWE 351
P G L ++ L AV + +L F++ ES + R P+
Sbjct: 146 AGPVAGGLLGAISLHAPFLAAAVLNGLNLLLGCFLM---QESHKGERR-------PMPLR 195
Query: 352 QADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVH-----VAV 406
+P +S R + TI+ +TVF + GQ L ++ G D + +
Sbjct: 196 AFNPVSSFRWA-RGMTIVAALMTVFF-IMQLVGQVPA---ALWVIFGEDRFRWSATMIGL 250
Query: 407 FIAVIGTLSVSAQ-IILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILA 465
+AV G L AQ + G G K II G+ + L + F ++ WM + IL
Sbjct: 251 SLAVFGILHALAQAFVTGPATKRFGEKQAIIAGMAADALGYVLLAFATRGWMAFPIMILL 310
Query: 466 SLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGP 507
+ I PA+ A++S D D QG +QG + + L + GP
Sbjct: 311 ASGGIGMPALQAMLSRQVDDDHQGQLQGSLAALTSLTSITGP 352
|
Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter. Escherichia coli (taxid: 562) |
| >sp|P51563|TCR7_VIBAN Tetracycline resistance protein, class G OS=Vibrio anguillarum GN=tetA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 119/265 (44%), Gaps = 15/265 (5%)
Query: 247 ISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTY 306
+SGV T +V + +AD T E R+ +G + A + A M+ PALG L
Sbjct: 103 VSGVTGATGAVAASTIADSTGEGSRARWFG------YMGACYGAGMIAGPALGGMLGGIS 156
Query: 307 SLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQ 366
+ + +A A +L+ F L+A L E G P+ + PF LR +
Sbjct: 157 AHAPFIAAA----LLNGFAFLLAC-IFLKETHHSHGGTGKPV---RIKPFVLLRLDDALR 208
Query: 367 TILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIG-TLSVSAQIILGCL 425
+ L F+ L + +Y + ++ V + +A G T ++ + G L
Sbjct: 209 GLGALFAVFFIIQLIGQVPAALWVIYGEDRFQWNTATVGLSLAAFGATHAIFQAFVTGPL 268
Query: 426 MNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLASITYPAISALVSMHSDA 485
+ LG + T++ G+ + + F +Q WM++ +L + + PA+ A++S + +
Sbjct: 269 SSRLGERRTLLFGMAADGTGFVLLAFATQGWMVFPILLLLAAGGVGMPALQAMLSNNVSS 328
Query: 486 DRQGLVQGMVTGMRGLCNGLGPAMF 510
++QG +QG +T + L + GP F
Sbjct: 329 NKQGALQGTLTSLTNLSSIAGPLGF 353
|
Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter. Vibrio anguillarum (taxid: 55601) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 594 | ||||||
| 332023025 | 524 | Hippocampus abundant transcript 1 protei | 0.728 | 0.826 | 0.662 | 1e-179 | |
| 307205753 | 524 | Hippocampus abundant transcript 1 protei | 0.728 | 0.826 | 0.672 | 1e-178 | |
| 322786474 | 488 | hypothetical protein SINV_10524 [Solenop | 0.734 | 0.893 | 0.649 | 1e-178 | |
| 270008667 | 532 | hypothetical protein TcasGA2_TC015216 [T | 0.826 | 0.922 | 0.607 | 1e-177 | |
| 158285977 | 850 | AGAP007253-PA [Anopheles gambiae str. PE | 0.740 | 0.517 | 0.621 | 1e-175 | |
| 158285979 | 531 | AGAP007253-PB [Anopheles gambiae str. PE | 0.740 | 0.828 | 0.618 | 1e-175 | |
| 321479386 | 500 | hypothetical protein DAPPUDRAFT_205211 [ | 0.787 | 0.936 | 0.616 | 1e-173 | |
| 403182939 | 480 | AAEL017462-PC, partial [Aedes aegypti] | 0.725 | 0.897 | 0.621 | 1e-173 | |
| 403182938 | 495 | AAEL017462-PB, partial [Aedes aegypti] | 0.735 | 0.882 | 0.618 | 1e-173 | |
| 403182937 | 484 | AAEL017462-PA, partial [Aedes aegypti] | 0.723 | 0.888 | 0.622 | 1e-173 |
| >gi|332023025|gb|EGI63290.1| Hippocampus abundant transcript 1 protein [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1640), Expect = e-179, Method: Compositional matrix adjust.
Identities = 336/507 (66%), Positives = 378/507 (74%), Gaps = 74/507 (14%)
Query: 89 LQTSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSF 148
L++SG+GE SVYHALVVIFLEFFAWGLLTMPII VLN TFPDHTFLMNGLI+GIKG LSF
Sbjct: 44 LKSSGVGEASVYHALVVIFLEFFAWGLLTMPIIRVLNETFPDHTFLMNGLIIGIKGILSF 103
Query: 149 LSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAY 208
LSAPLIGALSD+WGRK FLLITV
Sbjct: 104 LSAPLIGALSDVWGRKFFLLITV------------------------------------- 126
Query: 209 VADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEE 268
F I LM+++TWWFFAMISISGVFA TFSVVFAYVADVTEE
Sbjct: 127 ----------------AFTCAPIPLMSINTWWFFAMISISGVFACTFSVVFAYVADVTEE 170
Query: 269 HERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILV 328
++RSLAYGL VSATFAASMV SPALGAY+ KTY +L VA+ATA+A+LDVFFILV
Sbjct: 171 NQRSLAYGL------VSATFAASMVISPALGAYIMKTYGENLAVALATAIAVLDVFFILV 224
Query: 329 AVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSC 388
AVPESLPEK R APISWEQADPFA+L KVGKD TILMLCVTVFLSYLPEAGQYSC
Sbjct: 225 AVPESLPEKTRPP----APISWEQADPFAALGKVGKDHTILMLCVTVFLSYLPEAGQYSC 280
Query: 389 LFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMW 448
+FVYLKL MGF + VA+FIAV+G LSV AQI+LG LM LG+KHTI++GL+FEMLQLMW
Sbjct: 281 IFVYLKLAMGFSNLMVAIFIAVVGILSVGAQIVLGPLMRTLGSKHTIMLGLLFEMLQLMW 340
Query: 449 YGFGSQMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPA 508
YGFGSQ WMMWAAG+LAS++SITYPAISA VSMHSDAD+QGLVQGMVTGMRGLCNGLGPA
Sbjct: 341 YGFGSQTWMMWAAGVLASVSSITYPAISAFVSMHSDADKQGLVQGMVTGMRGLCNGLGPA 400
Query: 509 MFGLIFYMFHVDLSDG-PD-------VGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIA 560
MFG+IFY+FHVDL+D P+ V + +++ P ++PGPPFVFGALLVI
Sbjct: 401 MFGVIFYLFHVDLNDDTPNLPLKPSFVDENNRTGTSTHLDIMPQLVPGPPFVFGALLVIC 460
Query: 561 ALLVATFIPESIVTRSVGTTQLRRQSS 587
ALLVA FIPES ++ T L S+
Sbjct: 461 ALLVAAFIPES---NTMSTGSLHHPST 484
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307205753|gb|EFN83983.1| Hippocampus abundant transcript 1 protein [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 632 bits (1631), Expect = e-178, Method: Compositional matrix adjust.
Identities = 341/507 (67%), Positives = 377/507 (74%), Gaps = 74/507 (14%)
Query: 89 LQTSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSF 148
L++SGIGE SVYHALVVIFLEFFAWGLLTMPIISVLN TFPDHTFLMNGLIMGIKG LSF
Sbjct: 44 LKSSGIGEASVYHALVVIFLEFFAWGLLTMPIISVLNETFPDHTFLMNGLIMGIKGILSF 103
Query: 149 LSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAY 208
LSAPLIGALSD+WGRK FL ITV
Sbjct: 104 LSAPLIGALSDVWGRKFFLFITV------------------------------------- 126
Query: 209 VADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEE 268
F I LM+ +TWWFFAMISISGVFA TFSVVFAYVADVTEE
Sbjct: 127 ----------------AFTCAPIPLMSFNTWWFFAMISISGVFACTFSVVFAYVADVTEE 170
Query: 269 HERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILV 328
H+RS AYGL VSATFAASMV SPALGAY Y +L VA+ATA+AILDV FILV
Sbjct: 171 HQRSPAYGL------VSATFAASMVISPALGAYTMTKYGQNLTVALATAIAILDVLFILV 224
Query: 329 AVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSC 388
AVPESLPEK R APISWEQADPFA+L KVGKD TILMLCVTVFLSYLPEAGQYSC
Sbjct: 225 AVPESLPEKARPP----APISWEQADPFAALGKVGKDHTILMLCVTVFLSYLPEAGQYSC 280
Query: 389 LFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMW 448
+FVYLKL MGF V VAVFIAV+G LSV AQI+LG LM LG+KHTI++GL+FEMLQLMW
Sbjct: 281 IFVYLKLAMGFSVVMVAVFIAVVGILSVGAQIVLGPLMRALGSKHTIMLGLLFEMLQLMW 340
Query: 449 YGFGSQMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPA 508
YGFGSQ+WMMWAAG+LAS++SITYPAISA VSMHSDAD+QGLVQGMVTGMRGLCNGLGPA
Sbjct: 341 YGFGSQIWMMWAAGVLASVSSITYPAISAFVSMHSDADKQGLVQGMVTGMRGLCNGLGPA 400
Query: 509 MFGLIFYMFHVDLSDG-PD--VGPGTLA--NRT---NNVNSYPSVIPGPPFVFGALLVIA 560
MFG+IFY+FHVDL+D P+ + P + NRT +++ P ++PGPPFVFGALLVI
Sbjct: 401 MFGVIFYLFHVDLNDDTPNLPLKPSLVEENNRTGTSTHLDIMPQLVPGPPFVFGALLVIC 460
Query: 561 ALLVATFIPESIVTRSVGTTQLRRQSS 587
ALLVA FIPES ++ T L S+
Sbjct: 461 ALLVAAFIPES---NTMSTGSLHHPST 484
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322786474|gb|EFZ12923.1| hypothetical protein SINV_10524 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 335/516 (64%), Positives = 376/516 (72%), Gaps = 80/516 (15%)
Query: 86 WFVLQTSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGF 145
+ + Q+SG+GE SVYHALVVIFLEFFAWGLLTMPII VLN TFPDHTFLMNGLI+GIKG
Sbjct: 1 YLIFQSSGVGEASVYHALVVIFLEFFAWGLLTMPIIRVLNETFPDHTFLMNGLIIGIKGI 60
Query: 146 LSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVV 205
LSFLSAPLIGALSD+WGRK FLLITV
Sbjct: 61 LSFLSAPLIGALSDVWGRKFFLLITV---------------------------------- 86
Query: 206 FAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADV 265
F I LM+++TWWFFAMISISGVFA TFSVVFAYVADV
Sbjct: 87 -------------------AFTCAPIPLMSINTWWFFAMISISGVFACTFSVVFAYVADV 127
Query: 266 TEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFF 325
TEE++RSLAYGL VSATFAASMV SPALGAY+ TY +L VA+ATA+A+LDVFF
Sbjct: 128 TEENQRSLAYGL------VSATFAASMVISPALGAYIMNTYGENLAVALATAIAVLDVFF 181
Query: 326 ILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQ 385
ILVAVPESLPEK R APISWEQADPFA+L KVGKD TILMLCVTVFLSYLPEAGQ
Sbjct: 182 ILVAVPESLPEKTRPP----APISWEQADPFAALGKVGKDHTILMLCVTVFLSYLPEAGQ 237
Query: 386 YSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQ 445
YSC+FVYLKL MGF + VA+FIAV+G LSV AQI+LG LM LG KHTI++GL+FEMLQ
Sbjct: 238 YSCIFVYLKLAMGFSNLMVAIFIAVVGILSVGAQIVLGPLMRTLGGKHTIMLGLLFEMLQ 297
Query: 446 LMWYGFGSQMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGL 505
LMWYGFGSQ WMMWAAG+LAS++SITYPAISA VSMHSDAD+QGLVQGMVTGMRGLCNGL
Sbjct: 298 LMWYGFGSQTWMMWAAGVLASVSSITYPAISAFVSMHSDADKQGLVQGMVTGMRGLCNGL 357
Query: 506 GPAMFGLIFYMFHVDLSDG-PDVGPGTLANRTNNVNS-------------YPSVIPGPPF 551
GPAMFG+IFY+FHVDL+D P++ + N + Y ++PGPPF
Sbjct: 358 GPAMFGVIFYLFHVDLNDDTPNLPLKPFVDENNRTRTNTHLDIMPQVHTLYLQLVPGPPF 417
Query: 552 VFGALLVIAALLVATFIPESIVTRSVGTTQLRRQSS 587
VFGALLVI ALLVA FIPES ++ T L S+
Sbjct: 418 VFGALLVICALLVAAFIPES---NTMSTGSLHHPST 450
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270008667|gb|EFA05115.1| hypothetical protein TcasGA2_TC015216 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 347/571 (60%), Positives = 406/571 (71%), Gaps = 80/571 (14%)
Query: 12 MPVKASRKMVGLIIRSRKSILNDGIVTKVPLWQYICMDSLETTYVLGRVRKLVKSLIKSL 71
M K+S++M G+I+ SRKSI DG+VT VP Y V+ L ++ L
Sbjct: 1 MKAKSSKRMAGIIMMSRKSIAKDGVVT-VP--------ERSNRYHSDNVKSLRCGIMCML 51
Query: 72 VKS---TKSPVNSELFVWFVLQ---TSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLN 125
V +N F L+ TSGIG PS+YHALVVIFLEFFAWGLLTMP+ISVLN
Sbjct: 52 VAYYLFKNYVLNFRKFRRLYLKYPPTSGIGMPSLYHALVVIFLEFFAWGLLTMPVISVLN 111
Query: 126 RTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDT 185
TFPDHTFLMNGLIMGIKG LSFLSAPL+GALSD+ GRKLFLLITVF
Sbjct: 112 TTFPDHTFLMNGLIMGIKGLLSFLSAPLVGALSDVCGRKLFLLITVF------------- 158
Query: 186 WWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMI 245
F L I LMT++T+WFFAM+
Sbjct: 159 ----------------------------------------FTCLPIPLMTINTFWFFAMV 178
Query: 246 SISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKT 305
SISGVFAVTFSVVFAYVADVT++ +RSLAYGL VSATFAASMV SPALGAYL +
Sbjct: 179 SISGVFAVTFSVVFAYVADVTDQKDRSLAYGL------VSATFAASMVISPALGAYLMER 232
Query: 306 YSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKD 365
+S+SLVVA+ATAVAILDVFFILVAVPESLPEKVR + PISWEQADPF+SLR VG+D
Sbjct: 233 WSVSLVVALATAVAILDVFFILVAVPESLPEKVRVS-----PISWEQADPFSSLRNVGQD 287
Query: 366 QTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCL 425
TIL+LC+TVFLSYLPEAGQYSC+FVYLKLVMG+ VAVF+ ++G L+V Q+ LG L
Sbjct: 288 PTILLLCITVFLSYLPEAGQYSCIFVYLKLVMGWSAPMVAVFVGLVGLLAVLTQLCLGAL 347
Query: 426 MNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLASITYPAISALVSMHSDA 485
M LG KHTI++GL+FEMLQL+WYGFG+ WMMWAAG+LAS++SITYPAISA VS+ S
Sbjct: 348 MKNLGCKHTIMLGLLFEMLQLLWYGFGTTTWMMWAAGMLASMSSITYPAISAFVSIVSTP 407
Query: 486 DRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSV 545
DRQG+VQGMVTGMRGLCNGLGPAMFGLIFY+FHVDL++G + GT A +++ +Y +
Sbjct: 408 DRQGVVQGMVTGMRGLCNGLGPAMFGLIFYVFHVDLNEGEN-QEGTHATPVHDMETYSQL 466
Query: 546 IPGPPFVFGALLVIAALLVATFIPESIVTRS 576
+PGPPFVFGA LVI ALLVA+FIP T S
Sbjct: 467 VPGPPFVFGAFLVICALLVASFIPTKSSTDS 497
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158285977|ref|XP_001687981.1| AGAP007253-PA [Anopheles gambiae str. PEST] gi|157020249|gb|EDO64630.1| AGAP007253-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 334/537 (62%), Positives = 382/537 (71%), Gaps = 97/537 (18%)
Query: 88 VLQTSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLS 147
V ++SGIGEPSVYHALVVIFLEFFAWGLLTMP+I+VLN+TFPDHTFLMNGL+MGIKG LS
Sbjct: 357 VFRSSGIGEPSVYHALVVIFLEFFAWGLLTMPVINVLNQTFPDHTFLMNGLVMGIKGILS 416
Query: 148 FLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFA 207
FLSAPLIGALSD+WGRK FLLITVF
Sbjct: 417 FLSAPLIGALSDVWGRKFFLLITVF----------------------------------- 441
Query: 208 YVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTE 267
F I LM++++WWFFAMISISGVFAVTFSVVFAYVADVT
Sbjct: 442 ------------------FTCAPIPLMSINSWWFFAMISISGVFAVTFSVVFAYVADVTT 483
Query: 268 EHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFIL 327
+RS AYGL VSATFAAS+V SPALGAYL YS L+VA+ATA+A+LDVFFIL
Sbjct: 484 VEDRSRAYGL------VSATFAASLVISPALGAYLNDKYSEPLIVALATAIAVLDVFFIL 537
Query: 328 VAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYS 387
VAVPESLPEKVR +SWG APISWEQADPFA+LRKVG DQTILM CVTV LSYLPEAGQYS
Sbjct: 538 VAVPESLPEKVRPSSWG-APISWEQADPFAALRKVGLDQTILMQCVTVLLSYLPEAGQYS 596
Query: 388 CLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLM 447
C+FVYLKL M F + V++FIAV+G LS+ Q+ILG LM LGAK TIIIGL+FEMLQL+
Sbjct: 597 CIFVYLKLKMHFSSIDVSIFIAVVGILSILTQVILGDLMKALGAKRTIIIGLLFEMLQLL 656
Query: 448 WYGFGSQMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGP 507
WYGFGSQ WMMWAAGILASLASITYPAISA VS+HS+ D+QG+VQGMVTGMRGLCNGLGP
Sbjct: 657 WYGFGSQTWMMWAAGILASLASITYPAISAFVSIHSNPDQQGVVQGMVTGMRGLCNGLGP 716
Query: 508 AMFGLIFYMFHVDLSDGPDVGPGTLA----------------------NRT--------N 537
AMFG+IFY+FHVDL+D +V +L N T +
Sbjct: 717 AMFGVIFYVFHVDLNDEHNVASHSLNGAAIGAVAGGGVFDGSDAKFVRNETLLGGSVHHH 776
Query: 538 NVNSYPSVIPGPPFVFGALLVIAALLVATFIPESIVTRSVGTTQLRRQSSVGSVAVD 594
+ Y ++PGPPFVFGAL+VI A+ VA FIPE+ + +RR S + S+ VD
Sbjct: 777 IEDEYSQLMPGPPFVFGALMVICAIAVAAFIPETP------SDTMRRPSGL-SLDVD 826
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158285979|ref|XP_308549.3| AGAP007253-PB [Anopheles gambiae str. PEST] gi|157020250|gb|EAA04080.3| AGAP007253-PB [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 332/537 (61%), Positives = 382/537 (71%), Gaps = 97/537 (18%)
Query: 88 VLQTSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLS 147
+ Q+SGIGEPSVYHALVVIFLEFFAWGLLTMP+I+VLN+TFPDHTFLMNGL+MGIKG LS
Sbjct: 38 LFQSSGIGEPSVYHALVVIFLEFFAWGLLTMPVINVLNQTFPDHTFLMNGLVMGIKGILS 97
Query: 148 FLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFA 207
FLSAPLIGALSD+WGRK FLLITVF TC PIPLM++++WWFFAMISISGVFAVTFSVVFA
Sbjct: 98 FLSAPLIGALSDVWGRKFFLLITVFFTCAPIPLMSINSWWFFAMISISGVFAVTFSVVFA 157
Query: 208 YVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTE 267
YVADVT +RS AYGL +S FA +
Sbjct: 158 YVADVTTVEDRSRAYGL----------------------VSATFAAS------------- 182
Query: 268 EHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFIL 327
+V SPALGAYL YS L+VA+ATA+A+LDVFFIL
Sbjct: 183 ------------------------LVISPALGAYLNDKYSEPLIVALATAIAVLDVFFIL 218
Query: 328 VAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYS 387
VAVPESLPEKVR +SW GAPISWEQADPFA+LRKVG DQTILM CVTV LSYLPEAGQYS
Sbjct: 219 VAVPESLPEKVRPSSW-GAPISWEQADPFAALRKVGLDQTILMQCVTVLLSYLPEAGQYS 277
Query: 388 CLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLM 447
C+FVYLKL M F + V++FIAV+G LS+ Q+ILG LM LGAK TIIIGL+FEMLQL+
Sbjct: 278 CIFVYLKLKMHFSSIDVSIFIAVVGILSILTQVILGDLMKALGAKRTIIIGLLFEMLQLL 337
Query: 448 WYGFGSQMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGP 507
WYGFGSQ WMMWAAGILASLASITYPAISA VS+HS+ D+QG+VQGMVTGMRGLCNGLGP
Sbjct: 338 WYGFGSQTWMMWAAGILASLASITYPAISAFVSIHSNPDQQGVVQGMVTGMRGLCNGLGP 397
Query: 508 AMFGLIFYMFHVDLSDGPDVGPGTLA----------------------NRT--------N 537
AMFG+IFY+FHVDL+D +V +L N T +
Sbjct: 398 AMFGVIFYVFHVDLNDEHNVASHSLNGAAIGAVAGGGVFDGSDAKFVRNETLLGGSVHHH 457
Query: 538 NVNSYPSVIPGPPFVFGALLVIAALLVATFIPESIVTRSVGTTQLRRQSSVGSVAVD 594
+ Y ++PGPPFVFGAL+VI A+ VA FIPE+ + +RR S + S+ VD
Sbjct: 458 IEDEYSQLMPGPPFVFGALMVICAIAVAAFIPET------PSDTMRRPSGL-SLDVD 507
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321479386|gb|EFX90342.1| hypothetical protein DAPPUDRAFT_205211 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 616 bits (1588), Expect = e-173, Method: Compositional matrix adjust.
Identities = 335/543 (61%), Positives = 391/543 (72%), Gaps = 75/543 (13%)
Query: 58 GRVRKLVKSLIKSLVKSTKSPVNSELFVWFVLQTSGIGEPSVYHALVVIFLEFFAWGLLT 117
GR K V S+ L + K+ F ++ SGIGEPS+YHALVVIFLEFFAWGLLT
Sbjct: 3 GRSSKKVSSM---LTRGRKN-----FFKDGLITGSGIGEPSLYHALVVIFLEFFAWGLLT 54
Query: 118 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLP 177
P+I+VLN TFPDHTFLMNGLI+GIKG LSFLSAPL+GALSD+WGRK FL++TVF
Sbjct: 55 TPMITVLNETFPDHTFLMNGLIVGIKGLLSFLSAPLVGALSDVWGRKFFLVVTVF----- 109
Query: 178 IPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLD 237
F I L+ ++
Sbjct: 110 ------------------------------------------------FTCAPIPLIHIN 121
Query: 238 TWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPA 297
TWW+FAMISISGVFAVTFSVVFAYVADVT+E ERS AYGL VSATFAAS+V SPA
Sbjct: 122 TWWYFAMISISGVFAVTFSVVFAYVADVTDESERSAAYGL------VSATFAASLVTSPA 175
Query: 298 LGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFA 357
LGAYL + YS +LVVA+ATAVA+LDVFFILVAVPESLPEKVR +SWG APISWEQADPFA
Sbjct: 176 LGAYLGRVYSETLVVAIATAVALLDVFFILVAVPESLPEKVRPSSWG-APISWEQADPFA 234
Query: 358 SLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVS 417
+L+KVGKD TILMLCVTVFLSYLPEAGQYSC FVYLKLVMGF VA FIAV+G LSV
Sbjct: 235 ALKKVGKDNTILMLCVTVFLSYLPEAGQYSCFFVYLKLVMGFSAEAVATFIAVVGVLSVF 294
Query: 418 AQI-ILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLASITYPAIS 476
AQ +LG LM +GAK TI+IGLVFEMLQL WYGFGSQMWMMW+AG+LA+++SI+YPAIS
Sbjct: 295 AQTAVLGLLMRTVGAKATILIGLVFEMLQLAWYGFGSQMWMMWSAGVLAAISSISYPAIS 354
Query: 477 ALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVG---PGTLA 533
A VSMH+DAD+QGLVQGM+TG+RGLCNGLGPA++GLIFY+F+V+L+D V G+
Sbjct: 355 AFVSMHADADKQGLVQGMITGVRGLCNGLGPALYGLIFYLFNVNLNDKDAVKLSHSGSHT 414
Query: 534 NRTNNVN--SYPSVIPGPPFVFGALLVIAALLVATFIPESIVTRSVGTTQLRRQSSVGSV 591
N T ++ S +PGPPFVFG+ LV+ ALLVA FIPE + ++ + RR S
Sbjct: 415 NETTHIEDISVIRALPGPPFVFGSFLVVCALLVAFFIPEGPLGSTL-KSNARRSSGPTET 473
Query: 592 AVD 594
VD
Sbjct: 474 PVD 476
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|403182939|gb|EJY57735.1| AAEL017462-PC, partial [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 330/531 (62%), Positives = 373/531 (70%), Gaps = 100/531 (18%)
Query: 91 TSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLS 150
+SGIGEPSVYHALVVIFLEFFAWGLLTMP+I+VLN+TFPDHTFLMNGL+MGIKG LSFLS
Sbjct: 1 SSGIGEPSVYHALVVIFLEFFAWGLLTMPVINVLNQTFPDHTFLMNGLVMGIKGILSFLS 60
Query: 151 APLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVA 210
APLIGALSD+WGRK FLLITVF
Sbjct: 61 APLIGALSDVWGRKFFLLITVF-------------------------------------- 82
Query: 211 DVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHE 270
F I LM++++WWFFAMISISGVFAVTFSVVFAYVADVT +
Sbjct: 83 ---------------FTCAPIPLMSINSWWFFAMISISGVFAVTFSVVFAYVADVTTVED 127
Query: 271 RSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAV 330
RS AYGL VSATFAAS+V SPALGAYL YS L+VA+ATA+A+LDVFFILVAV
Sbjct: 128 RSRAYGL------VSATFAASLVISPALGAYLNDKYSEPLIVALATAIAVLDVFFILVAV 181
Query: 331 PESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLF 390
PESLPEKVR +SWG APISWEQADPFA+LRKVG DQTILM CVTV LSYLPEAGQYSC+F
Sbjct: 182 PESLPEKVRPSSWG-APISWEQADPFAALRKVGLDQTILMQCVTVLLSYLPEAGQYSCIF 240
Query: 391 VYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYG 450
VYLKL M F V V++FIAV+G LS+ Q++LG LM VLGAK TIIIGL+FEMLQL+WYG
Sbjct: 241 VYLKLKMHFSSVDVSIFIAVVGILSILTQVVLGDLMKVLGAKRTIIIGLLFEMLQLLWYG 300
Query: 451 FGSQMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMF 510
FGSQ WMMWAAGILASLASITYPAISA VS+HS+ D+QG+VQGMVTGMRGLCNGLGPAMF
Sbjct: 301 FGSQTWMMWAAGILASLASITYPAISAFVSIHSNPDQQGVVQGMVTGMRGLCNGLGPAMF 360
Query: 511 GLIFYMFHVDLSDGPDVGPGTLANRTNNVNS----------------------------- 541
G+IFY+FHVDL+D + G N + S
Sbjct: 361 GVIFYVFHVDLNDDHNTGVAASLNGHSAAGSAIGGSALGSLDGSKFVRNETLHGLGSSHH 420
Query: 542 -----YPSVIPGPPFVFGALLVIAALLVATFIPESIVTRSVGTTQLRRQSS 587
Y ++PGPPFVFGAL+VI A+ VA FIPE+ + +RR S
Sbjct: 421 IIEDEYSQLMPGPPFVFGALMVICAIAVAAFIPEA------PSDSIRRPSE 465
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|403182938|gb|EJY57734.1| AAEL017462-PB, partial [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 333/538 (61%), Positives = 377/538 (70%), Gaps = 101/538 (18%)
Query: 91 TSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLS 150
+SGIGEPSVYHALVVIFLEFFAWGLLTMP+I+VLN+TFPDHTFLMNGL+MGIKG LSFLS
Sbjct: 1 SSGIGEPSVYHALVVIFLEFFAWGLLTMPVINVLNQTFPDHTFLMNGLVMGIKGILSFLS 60
Query: 151 APLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVA 210
APLIGALSD+WGRK FLLITVF
Sbjct: 61 APLIGALSDVWGRKFFLLITVF-------------------------------------- 82
Query: 211 DVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHE 270
F I LM++++WWFFAMISISGVFAVTFSVVFAYVADVT +
Sbjct: 83 ---------------FTCAPIPLMSINSWWFFAMISISGVFAVTFSVVFAYVADVTTVED 127
Query: 271 RSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAV 330
RS AYGL VSATFAAS+V SPALGAYL YS L+VA+ATA+A+LDVFFILVAV
Sbjct: 128 RSRAYGL------VSATFAASLVISPALGAYLNDKYSEPLIVALATAIAVLDVFFILVAV 181
Query: 331 PESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLF 390
PESLPEKVR +SWG APISWEQADPFA+LRKVG DQTILM CVTV LSYLPEAGQYSC+F
Sbjct: 182 PESLPEKVRPSSWG-APISWEQADPFAALRKVGLDQTILMQCVTVLLSYLPEAGQYSCIF 240
Query: 391 VYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYG 450
VYLKL M F V V++FIAV+G LS+ Q++LG LM VLGAK TIIIGL+FEMLQL+WYG
Sbjct: 241 VYLKLKMHFSSVDVSIFIAVVGILSILTQVVLGDLMKVLGAKRTIIIGLLFEMLQLLWYG 300
Query: 451 FGSQMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMF 510
FGSQ WMMWAAGILASLASITYPAISA VS+HS+ D+QG+VQGMVTGMRGLCNGLGPAMF
Sbjct: 301 FGSQTWMMWAAGILASLASITYPAISAFVSIHSNPDQQGVVQGMVTGMRGLCNGLGPAMF 360
Query: 511 GLIFYMFHVDLSDGPDVGPGTLANRTNNVNS----------------------------- 541
G+IFY+FHVDL+D + G N + S
Sbjct: 361 GVIFYVFHVDLNDDHNTGVAASLNGHSAAGSAIGGSALGSLDGSKFVRNETLHGLGSSHH 420
Query: 542 -----YPSVIPGPPFVFGALLVIAALLVATFIPESIVTRSVGTTQLRRQSSVGSVAVD 594
Y ++PGPPFVFGAL+VI A+ VA FIPE+ + +RR S + SV D
Sbjct: 421 IIEDEYSQLMPGPPFVFGALMVICAIAVAAFIPEA------PSDSIRRPSGL-SVDAD 471
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|403182937|gb|EJY57733.1| AAEL017462-PA, partial [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 330/530 (62%), Positives = 373/530 (70%), Gaps = 100/530 (18%)
Query: 91 TSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLS 150
+SGIGEPSVYHALVVIFLEFFAWGLLTMP+I+VLN+TFPDHTFLMNGL+MGIKG LSFLS
Sbjct: 1 SSGIGEPSVYHALVVIFLEFFAWGLLTMPVINVLNQTFPDHTFLMNGLVMGIKGILSFLS 60
Query: 151 APLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVA 210
APLIGALSD+WGRK FLLITVF
Sbjct: 61 APLIGALSDVWGRKFFLLITVF-------------------------------------- 82
Query: 211 DVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHE 270
F I LM++++WWFFAMISISGVFAVTFSVVFAYVADVT +
Sbjct: 83 ---------------FTCAPIPLMSINSWWFFAMISISGVFAVTFSVVFAYVADVTTVED 127
Query: 271 RSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAV 330
RS AYGL VSATFAAS+V SPALGAYL YS L+VA+ATA+A+LDVFFILVAV
Sbjct: 128 RSRAYGL------VSATFAASLVISPALGAYLNDKYSEPLIVALATAIAVLDVFFILVAV 181
Query: 331 PESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLF 390
PESLPEKVR +SWG APISWEQADPFA+LRKVG DQTILM CVTV LSYLPEAGQYSC+F
Sbjct: 182 PESLPEKVRPSSWG-APISWEQADPFAALRKVGLDQTILMQCVTVLLSYLPEAGQYSCIF 240
Query: 391 VYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYG 450
VYLKL M F V V++FIAV+G LS+ Q++LG LM VLGAK TIIIGL+FEMLQL+WYG
Sbjct: 241 VYLKLKMHFSSVDVSIFIAVVGILSILTQVVLGDLMKVLGAKRTIIIGLLFEMLQLLWYG 300
Query: 451 FGSQMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMF 510
FGSQ WMMWAAGILASLASITYPAISA VS+HS+ D+QG+VQGMVTGMRGLCNGLGPAMF
Sbjct: 301 FGSQTWMMWAAGILASLASITYPAISAFVSIHSNPDQQGVVQGMVTGMRGLCNGLGPAMF 360
Query: 511 GLIFYMFHVDLSDGPDVGPGTLANRTNNVNS----------------------------- 541
G+IFY+FHVDL+D + G N + S
Sbjct: 361 GVIFYVFHVDLNDDHNTGVAASLNGHSAAGSAIGGSALGSLDGSKFVRNETLHGLGSSHH 420
Query: 542 -----YPSVIPGPPFVFGALLVIAALLVATFIPESIVTRSVGTTQLRRQS 586
Y ++PGPPFVFGAL+VI A+ VA FIPE+ + +RR S
Sbjct: 421 IIEDEYSQLMPGPPFVFGALMVICAIAVAAFIPEA------PSDSIRRPS 464
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 594 | ||||||
| FB|FBgn0035400 | 705 | CG11537 [Drosophila melanogast | 0.626 | 0.527 | 0.578 | 1.8e-112 | |
| RGD|1305281 | 490 | Hiat1 "hippocampus abundant tr | 0.567 | 0.687 | 0.606 | 2.1e-109 | |
| ZFIN|ZDB-GENE-030131-834 | 493 | hiat1a "hippocampus abundant t | 0.567 | 0.683 | 0.601 | 3.4e-109 | |
| UNIPROTKB|Q5ZJK7 | 492 | HCN2 "Uncharacterized protein" | 0.683 | 0.825 | 0.522 | 7e-109 | |
| UNIPROTKB|E1C047 | 431 | E1C047 "Uncharacterized protei | 0.575 | 0.793 | 0.596 | 7e-109 | |
| UNIPROTKB|A6QLP5 | 490 | HIAT1 "Uncharacterized protein | 0.567 | 0.687 | 0.603 | 1.5e-108 | |
| UNIPROTKB|Q96MC6 | 490 | HIAT1 "Hippocampus abundant tr | 0.567 | 0.687 | 0.603 | 1.5e-108 | |
| UNIPROTKB|F1S559 | 462 | LOC100622510 "Uncharacterized | 0.567 | 0.729 | 0.603 | 1.5e-108 | |
| MGI|MGI:1201609 | 490 | Hiat1 "hippocampus abundant ge | 0.567 | 0.687 | 0.603 | 1.5e-108 | |
| UNIPROTKB|F1PC94 | 418 | HIAT1 "Uncharacterized protein | 0.567 | 0.806 | 0.603 | 1.5e-108 |
| FB|FBgn0035400 CG11537 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
Identities = 220/380 (57%), Positives = 275/380 (72%)
Query: 191 MISISGVFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGV 250
++ I G+ + + + ++D+ + L + F L I LM+++TWWFFAMISISG
Sbjct: 293 VMGIKGILSFLSAPLIGALSDIWGR-KFFLLVTVFFTCLPIPLMSINTWWFFAMISISGA 351
Query: 251 FAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSL 310
FAVTFSVVFAYVADVT ERS AYGL+ SATFAAS+V SPALG L + Y +L
Sbjct: 352 FAVTFSVVFAYVADVTTPEERSKAYGLA------SATFAASLVISPALGNALMEMYGDTL 405
Query: 311 XXXXXXXXXILDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILM 370
+LDVFFILVAVPESL EK+R ASWG APISWEQADPF +LRKVG D+T+LM
Sbjct: 406 VVALSTAIALLDVFFILVAVPESLSEKMRPASWG-APISWEQADPFLALRKVGTDKTVLM 464
Query: 371 LCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLG 430
LC+TV LSYLPEAG+YSC+FVYLKL MGF+ V V+VFIA++G LS++ Q+ LG M V G
Sbjct: 465 LCLTVLLSYLPEAGEYSCMFVYLKLKMGFNYVEVSVFIAIVGILSITVQVTLGSFMQVFG 524
Query: 431 AKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLASITYPAISALVSMHSDADRQGL 490
AK TII+GL E++QL+WYGFGSQ WMMW+AG++A+L SITYPAISA VS+++ + QG
Sbjct: 525 AKRTIIMGLALEIVQLLWYGFGSQKWMMWSAGVVAALGSITYPAISAFVSLYAAPESQGA 584
Query: 491 VQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPP 550
VQGM+TGMRGLCNGLGPA+FG++FY+F+VDL+D D + +R NV +PGPP
Sbjct: 585 VQGMITGMRGLCNGLGPAVFGVVFYLFNVDLNDDHDSHAKSSGSRATNVEKISQHVPGPP 644
Query: 551 FVFGXXXXXXXXXXXTFIPE 570
FVFG FIPE
Sbjct: 645 FVFGALCVFCAIIVSAFIPE 664
|
|
| RGD|1305281 Hiat1 "hippocampus abundant transcript 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1081 (385.6 bits), Expect = 2.1e-109, P = 2.1e-109
Identities = 211/348 (60%), Positives = 264/348 (75%)
Query: 226 FIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVS 285
F I LM + WW+FA+IS+SGVFAVTFSVVFAYVAD+T+EHERS+AYGL VS
Sbjct: 111 FTCAPIPLMKISPWWYFAVISVSGVFAVTFSVVFAYVADITQEHERSMAYGL------VS 164
Query: 286 ATFAASMVFSPALGAYLEKTYSLSLXXXXXXXXXILDVFFILVAVPESLPEKVRQASWGG 345
ATFAAS+V SPA+GAYL + Y SL +LD+ FILVAVPESLPEK+R ASWG
Sbjct: 165 ATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFILVAVPESLPEKMRPASWG- 223
Query: 346 APISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVA 405
APISWEQADPFASL+KVG+D +L++C+TVFLSYLPEAGQYS F+YL+ +M F VA
Sbjct: 224 APISWEQADPFASLKKVGQDSIVLLICITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVA 283
Query: 406 VFIAVIGTLSVSAQ-IILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGIL 464
FIAV+G LS+ AQ I+L LM +G K+TI++GL F++LQL WYGFGS+ WMMWAAG +
Sbjct: 284 AFIAVLGILSIIAQTIVLSLLMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAV 343
Query: 465 ASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDG 524
A+++SIT+PA+SALVS +DAD+QG+VQGM+TG+RGLCNGLGPA++G IFY+FHV+L +
Sbjct: 344 AAMSSITFPAVSALVSRTADADQQGVVQGMITGIRGLCNGLGPALYGFIFYIFHVELKEL 403
Query: 525 PDVGPGTLANRTNNVNSYP--SVIPGPPFVFGXXXXXXXXXXXTFIPE 570
P GP L T+ + + S+IPGPPF+FG FIPE
Sbjct: 404 PITGPD-LGTNTSPQHHFEQNSIIPGPPFLFGACSVLLALLVALFIPE 450
|
|
| ZFIN|ZDB-GENE-030131-834 hiat1a "hippocampus abundant transcript 1a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
Identities = 210/349 (60%), Positives = 264/349 (75%)
Query: 226 FIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVS 285
F I LM + WW+FA+IS+SGVFAVTFSV+FAYVAD+T+EHERS AYGL VS
Sbjct: 111 FTCAPIPLMKISPWWYFAVISMSGVFAVTFSVIFAYVADITQEHERSTAYGL------VS 164
Query: 286 ATFAASMVFSPALGAYLEKTYSLSLXXXXXXXXXILDVFFILVAVPESLPEKVRQASWGG 345
ATFAAS+V SPA+GAYL + Y +L +LD+ FILVAVPESLPEK+R ASWG
Sbjct: 165 ATFAASLVTSPAIGAYLSEVYGDTLVVILATAIALLDICFILVAVPESLPEKMRPASWG- 223
Query: 346 APISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVA 405
APISWEQADPFASLRKVG+D T+L++C+TVFLSYLPEAG YS F+YL+ V+GF VA
Sbjct: 224 APISWEQADPFASLRKVGQDSTVLLICITVFLSYLPEAGPYSSFFLYLRQVIGFTSETVA 283
Query: 406 VFIAVIGTLSVSAQ-IILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGIL 464
FIAV+G LS+ AQ ++LG LM +G K+TI++GL F++LQL WYGFGSQ WMMWAAG +
Sbjct: 284 AFIAVVGILSILAQTVVLGILMRSIGNKNTILLGLGFQILQLAWYGFGSQPWMMWAAGAV 343
Query: 465 ASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSD- 523
A+++SIT+PAISA+VS ++D D+QG+VQGM+TG+RGLCNGLGPA++G +FY+FHV+LS+
Sbjct: 344 AAMSSITFPAISAIVSRNADPDQQGVVQGMITGIRGLCNGLGPALYGFVFYLFHVELSEM 403
Query: 524 GPDVGP--GTLANRTNNVNSYPSVIPGPPFVFGXXXXXXXXXXXTFIPE 570
P P G N N + ++IPGPPF+FG FIPE
Sbjct: 404 DPAESPEKGVKPNMANPTDE-SAIIPGPPFLFGACSVLLSLLVALFIPE 451
|
|
| UNIPROTKB|Q5ZJK7 HCN2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1076 (383.8 bits), Expect = 7.0e-109, P = 7.0e-109
Identities = 221/423 (52%), Positives = 293/423 (69%)
Query: 161 WGRKLFLLITVFVTCLPIPLMTLDTWWFFAMI-SISGVFAVTFSVVFAYVADVTEEHERS 219
WG LL T +T L T+ +I + G+ + + + ++DV +
Sbjct: 51 WG----LLTTPMLTVLH-QTFPQHTFLMNGLIHGVKGLLSFLSAPLIGALSDVWGR-KSF 104
Query: 220 LAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSF 279
L + F I LM + WW+FA+IS+SGVFAVTFSV+FAYVAD+T+EHERS AYGL
Sbjct: 105 LLLTVFFTCAPIPLMKISPWWYFAVISMSGVFAVTFSVIFAYVADITQEHERSTAYGL-- 162
Query: 280 SFSQVSATFAASMVFSPALGAYLEKTYSLSLXXXXXXXXXILDVFFILVAVPESLPEKVR 339
VSATFAAS+V SPA+GAYL + Y +L +LD+ FIL+AVPESLPE++R
Sbjct: 163 ----VSATFAASLVTSPAIGAYLSQAYGDTLVVVLASGVALLDIGFILLAVPESLPEEMR 218
Query: 340 QASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGF 399
SWG APISWEQADPFASLRKVG+D T+L++C+TVFLSYLPEAGQYS F+YL+ V+GF
Sbjct: 219 PVSWG-APISWEQADPFASLRKVGQDSTVLLICITVFLSYLPEAGQYSSFFLYLRQVIGF 277
Query: 400 DEVHVAVFIAVIGTLSVSAQ-IILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMM 458
VA FI V+G LS+ AQ ++LG LM +G K+TI++GL F++LQL WYGFGSQ WMM
Sbjct: 278 SSETVAAFIGVVGILSILAQTVVLGILMRSIGNKNTILLGLGFQILQLAWYGFGSQPWMM 337
Query: 459 WAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH 518
WAAG +A+++SIT+PAISA+VS ++D D+QG+VQGM+TG+RGLCNGLGPA++G +FY+FH
Sbjct: 338 WAAGAVAAMSSITFPAISAMVSRNADPDQQGVVQGMITGIRGLCNGLGPALYGFVFYLFH 397
Query: 519 VDLSDGPDVGPGTLANRTNNVN--SYPSVIPGPPFVFGXXXXXXXXXXXTFIPESIVTRS 576
V+L++ +V A++ N N S+IPGPPF+FG FIPE +T
Sbjct: 398 VELNEMAEVETLGKASKPNMANPTDESSIIPGPPFLFGACSVLLSLLVALFIPEHNLTLR 457
Query: 577 VGT 579
G+
Sbjct: 458 SGS 460
|
|
| UNIPROTKB|E1C047 E1C047 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1076 (383.8 bits), Expect = 7.0e-109, P = 7.0e-109
Identities = 213/357 (59%), Positives = 270/357 (75%)
Query: 226 FIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVS 285
F I LM + WW+FA+IS+SGVFAVTFSVVFAYVAD+T+EHERS+AYGL VS
Sbjct: 52 FTCAPIPLMKISPWWYFAVISVSGVFAVTFSVVFAYVADITQEHERSMAYGL------VS 105
Query: 286 ATFAASMVFSPALGAYLEKTYSLSLXXXXXXXXXILDVFFILVAVPESLPEKVRQASWGG 345
ATFAAS+V SPA+GAYL + Y SL +LD+ FILVAVPESLPEK+R ASWG
Sbjct: 106 ATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFILVAVPESLPEKMRPASWG- 164
Query: 346 APISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVA 405
APISWEQADPFASL+KVG+D +L++C+TVFLSYLPEAGQYS F+YL+ +MGF VA
Sbjct: 165 APISWEQADPFASLKKVGQDSIVLLICITVFLSYLPEAGQYSSFFLYLRQIMGFSSESVA 224
Query: 406 VFIAVIGTLSVSAQ-IILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGIL 464
FIAV+G LS+ AQ I+L LM +G K+TI++GL F++LQL WYGFGS+ WMMWAAG +
Sbjct: 225 AFIAVLGILSIIAQTIVLSLLMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAV 284
Query: 465 ASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDG 524
A+++SIT+PA+SALVS +DAD+QG+VQGM+TG+RGLCNGLGPA++G IFY+FHV+L++
Sbjct: 285 AAMSSITFPAVSALVSRTADADQQGVVQGMITGIRGLCNGLGPALYGFIFYIFHVELNEL 344
Query: 525 P-DVGP--GTLANRTNNVNSYPSVIPGPPFVFGXXXXXXXXXXXTFIPE--SIVTRS 576
P P GT+ + + + S+IPGPPF+FG FIPE ++ RS
Sbjct: 345 PVPESPSGGTVVTQYHLQQN--SIIPGPPFLFGACSVLLALLVALFIPEHTNLTVRS 399
|
|
| UNIPROTKB|A6QLP5 HIAT1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
Identities = 210/348 (60%), Positives = 263/348 (75%)
Query: 226 FIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVS 285
F I LM + WW+FA+IS+SGVFAVTFSVVFAYVAD+T+EHERS+AYGL VS
Sbjct: 111 FTCAPIPLMKISPWWYFAVISVSGVFAVTFSVVFAYVADITQEHERSMAYGL------VS 164
Query: 286 ATFAASMVFSPALGAYLEKTYSLSLXXXXXXXXXILDVFFILVAVPESLPEKVRQASWGG 345
ATFAAS+V SPA+GAYL + Y SL +LD+ FILVAVPESLPEK+R ASWG
Sbjct: 165 ATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFILVAVPESLPEKMRPASWG- 223
Query: 346 APISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVA 405
APISWEQADPFASL+KVG+D +L++C+TVFLSYLPEAGQYS F+YL+ +M F VA
Sbjct: 224 APISWEQADPFASLKKVGQDSIVLLICITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVA 283
Query: 406 VFIAVIGTLSVSAQ-IILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGIL 464
FIAV+G LS+ AQ I+L LM +G K+TI++GL F++LQL WYGFGS+ WMMWAAG +
Sbjct: 284 AFIAVLGILSIIAQTIVLSLLMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAV 343
Query: 465 ASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDG 524
A+++SIT+PA+SALVS +DAD+QG+VQGM+TG+RGLCNGLGPA++G IFY+FHV+L +
Sbjct: 344 AAMSSITFPAVSALVSRTADADQQGVVQGMITGIRGLCNGLGPALYGFIFYIFHVELKEL 403
Query: 525 PDVGPGTLANRTNNVNSYP--SVIPGPPFVFGXXXXXXXXXXXTFIPE 570
P G L T+ + + S+IPGPPF+FG FIPE
Sbjct: 404 PMTGTD-LGTNTSPQHHFEQNSIIPGPPFLFGACSVLLALLVALFIPE 450
|
|
| UNIPROTKB|Q96MC6 HIAT1 "Hippocampus abundant transcript 1 protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
Identities = 210/348 (60%), Positives = 263/348 (75%)
Query: 226 FIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVS 285
F I LM + WW+FA+IS+SGVFAVTFSVVFAYVAD+T+EHERS+AYGL VS
Sbjct: 111 FTCAPIPLMKISPWWYFAVISVSGVFAVTFSVVFAYVADITQEHERSMAYGL------VS 164
Query: 286 ATFAASMVFSPALGAYLEKTYSLSLXXXXXXXXXILDVFFILVAVPESLPEKVRQASWGG 345
ATFAAS+V SPA+GAYL + Y SL +LD+ FILVAVPESLPEK+R ASWG
Sbjct: 165 ATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFILVAVPESLPEKMRPASWG- 223
Query: 346 APISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVA 405
APISWEQADPFASL+KVG+D +L++C+TVFLSYLPEAGQYS F+YL+ +M F VA
Sbjct: 224 APISWEQADPFASLKKVGQDSIVLLICITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVA 283
Query: 406 VFIAVIGTLSVSAQ-IILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGIL 464
FIAV+G LS+ AQ I+L LM +G K+TI++GL F++LQL WYGFGS+ WMMWAAG +
Sbjct: 284 AFIAVLGILSIIAQTIVLSLLMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAV 343
Query: 465 ASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDG 524
A+++SIT+PA+SALVS +DAD+QG+VQGM+TG+RGLCNGLGPA++G IFY+FHV+L +
Sbjct: 344 AAMSSITFPAVSALVSRTADADQQGVVQGMITGIRGLCNGLGPALYGFIFYIFHVELKEL 403
Query: 525 PDVGPGTLANRTNNVNSYP--SVIPGPPFVFGXXXXXXXXXXXTFIPE 570
P G L T+ + + S+IPGPPF+FG FIPE
Sbjct: 404 PITGTD-LGTNTSPQHHFEQNSIIPGPPFLFGACSVLLALLVALFIPE 450
|
|
| UNIPROTKB|F1S559 LOC100622510 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
Identities = 210/348 (60%), Positives = 263/348 (75%)
Query: 226 FIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVS 285
F I LM + WW+FA+IS+SGVFAVTFSVVFAYVAD+T+EHERS+AYGL VS
Sbjct: 83 FTCAPIPLMKISPWWYFAVISVSGVFAVTFSVVFAYVADITQEHERSMAYGL------VS 136
Query: 286 ATFAASMVFSPALGAYLEKTYSLSLXXXXXXXXXILDVFFILVAVPESLPEKVRQASWGG 345
ATFAAS+V SPA+GAYL + Y SL +LD+ FILVAVPESLPEK+R ASWG
Sbjct: 137 ATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFILVAVPESLPEKMRPASWG- 195
Query: 346 APISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVA 405
APISWEQADPFASL+KVG+D +L++C+TVFLSYLPEAGQYS F+YL+ +M F VA
Sbjct: 196 APISWEQADPFASLKKVGQDSIVLLICITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVA 255
Query: 406 VFIAVIGTLSVSAQ-IILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGIL 464
FIAV+G LS+ AQ I+L LM +G K+TI++GL F++LQL WYGFGS+ WMMWAAG +
Sbjct: 256 AFIAVLGILSIIAQTIVLSLLMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAV 315
Query: 465 ASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDG 524
A+++SIT+PA+SALVS +DAD+QG+VQGM+TG+RGLCNGLGPA++G IFY+FHV+L +
Sbjct: 316 AAMSSITFPAVSALVSRTADADQQGVVQGMITGIRGLCNGLGPALYGFIFYIFHVELKEL 375
Query: 525 PDVGPGTLANRTNNVNSYP--SVIPGPPFVFGXXXXXXXXXXXTFIPE 570
P G L T+ + + S+IPGPPF+FG FIPE
Sbjct: 376 PMTGTD-LGTNTSPQHHFEQNSIIPGPPFLFGACSVLLALLVALFIPE 422
|
|
| MGI|MGI:1201609 Hiat1 "hippocampus abundant gene transcript 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
Identities = 210/348 (60%), Positives = 263/348 (75%)
Query: 226 FIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVS 285
F I LM + WW+FA+IS+SGVFAVTFSVVFAYVAD+T+EHERS+AYGL VS
Sbjct: 111 FTCAPIPLMKISPWWYFAVISVSGVFAVTFSVVFAYVADITQEHERSMAYGL------VS 164
Query: 286 ATFAASMVFSPALGAYLEKTYSLSLXXXXXXXXXILDVFFILVAVPESLPEKVRQASWGG 345
ATFAAS+V SPA+GAYL + Y SL +LD+ FILVAVPESLPEK+R ASWG
Sbjct: 165 ATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFILVAVPESLPEKMRPASWG- 223
Query: 346 APISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVA 405
APISWEQADPFASL+KVG+D +L++C+TVFLSYLPEAGQYS F+YL+ +M F VA
Sbjct: 224 APISWEQADPFASLKKVGQDSIVLLICITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVA 283
Query: 406 VFIAVIGTLSVSAQ-IILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGIL 464
FIAV+G LS+ AQ I+L LM +G K+TI++GL F++LQL WYGFGS+ WMMWAAG +
Sbjct: 284 AFIAVLGILSIIAQTIVLSLLMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAV 343
Query: 465 ASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDG 524
A+++SIT+PA+SALVS +DAD+QG+VQGM+TG+RGLCNGLGPA++G IFY+FHV+L +
Sbjct: 344 AAMSSITFPAVSALVSRTADADQQGVVQGMITGIRGLCNGLGPALYGFIFYIFHVELKEL 403
Query: 525 PDVGPGTLANRTNNVNSYP--SVIPGPPFVFGXXXXXXXXXXXTFIPE 570
P G L T+ + + S+IPGPPF+FG FIPE
Sbjct: 404 PITGTD-LGTNTSPQHHFEQNSIIPGPPFLFGACSVLLALLVALFIPE 450
|
|
| UNIPROTKB|F1PC94 HIAT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
Identities = 210/348 (60%), Positives = 263/348 (75%)
Query: 226 FIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVS 285
F I LM + WW+FA+IS+SGVFAVTFSVVFAYVAD+T+EHERS+AYGL VS
Sbjct: 39 FTCAPIPLMKISPWWYFAVISVSGVFAVTFSVVFAYVADITQEHERSMAYGL------VS 92
Query: 286 ATFAASMVFSPALGAYLEKTYSLSLXXXXXXXXXILDVFFILVAVPESLPEKVRQASWGG 345
ATFAAS+V SPA+GAYL + Y SL +LD+ FILVAVPESLPEK+R ASWG
Sbjct: 93 ATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFILVAVPESLPEKMRPASWG- 151
Query: 346 APISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVA 405
APISWEQADPFASL+KVG+D +L++C+TVFLSYLPEAGQYS F+YL+ +M F VA
Sbjct: 152 APISWEQADPFASLKKVGQDSIVLLICITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVA 211
Query: 406 VFIAVIGTLSVSAQ-IILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGIL 464
FIAV+G LS+ AQ I+L LM +G K+TI++GL F++LQL WYGFGS+ WMMWAAG +
Sbjct: 212 AFIAVLGILSIIAQTIVLSLLMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAV 271
Query: 465 ASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDG 524
A+++SIT+PA+SALVS +DAD+QG+VQGM+TG+RGLCNGLGPA++G IFY+FHV+L +
Sbjct: 272 AAMSSITFPAVSALVSRTADADQQGVVQGMITGIRGLCNGLGPALYGFIFYIFHVELKEL 331
Query: 525 PDVGPGTLANRTNNVNSYP--SVIPGPPFVFGXXXXXXXXXXXTFIPE 570
P G L T+ + + S+IPGPPF+FG FIPE
Sbjct: 332 PMTGTD-LGTNTSPQHHFEQNSIIPGPPFLFGACSVLLALLVALFIPE 378
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q96MC6 | HIAT1_HUMAN | No assigned EC number | 0.5950 | 0.7003 | 0.8489 | yes | N/A |
| P70187 | HIAT1_MOUSE | No assigned EC number | 0.5950 | 0.7003 | 0.8489 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 594 | |||
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 9e-13 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-09 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-04 | |
| PRK10054 | 395 | PRK10054, PRK10054, putative transporter; Provisio | 4e-04 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 0.002 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.003 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 0.003 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 0.004 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 9e-13
Identities = 76/410 (18%), Positives = 129/410 (31%), Gaps = 70/410 (17%)
Query: 103 LVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG 162
+ FL LL + L + GL++ L+ PL G LSD +G
Sbjct: 2 FLAAFLAGLGRSLLGPALPLYLAEDL-GISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 163 RKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAY 222
R+ LLI + +
Sbjct: 61 RRRVLLIGLLLFA----------------------------------------------- 73
Query: 223 GLKFIALKIILMTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLSFSF 281
+ L ++L W + + G+ F A +AD ER A GL
Sbjct: 74 ----LGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGL---- 125
Query: 282 SQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQA 341
+SA F P LG L + + +A+L + +P PE R
Sbjct: 126 --LSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPK 183
Query: 342 SWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDE 401
AP A V + + L + + V+G
Sbjct: 184 PAEEAPAPLVPAWKLLLRDPV-------LWLLLALLLFGFAFFALLTYLPLYQEVLGLSA 236
Query: 402 VHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEML---QLMWYGFGSQMWMM 458
+ + + + G L +++LG L + LG + +++ L+ +L L +
Sbjct: 237 LLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWL 296
Query: 459 WAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGP 507
A +L + +PA++ALVS + + +G G+ L LGP
Sbjct: 297 LVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 4e-09
Identities = 70/420 (16%), Positives = 132/420 (31%), Gaps = 97/420 (23%)
Query: 102 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW 161
+ FL GLL+ + + + GLI+ L + L G LSD +
Sbjct: 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLSDRF 61
Query: 162 GRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLA 221
GR+ LL+ + + L L+ +
Sbjct: 62 GRRRVLLLGLLLFALGSLLLAFASSL---------------------------------- 87
Query: 222 YGLKFIALKIILMTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLSFS 280
W + G+ + A +A+ ER A GL +
Sbjct: 88 -----------------WLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSA 130
Query: 281 FSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQ 340
+ A + P LG L ++ + + + +L +L +
Sbjct: 131 GFGLGA------LLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLR--------- 175
Query: 341 ASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFD 400
+L+L + FL G + L +YL+ V+G
Sbjct: 176 --------------------------LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLS 209
Query: 401 EVHVAVFIAVIGTLSVSAQIILGCLMNVLGAK-HTIIIGLVFEMLQLMWYGFGSQMWMMW 459
+ +++ G + ++ G L + LG + ++IGL+ L L+ + ++
Sbjct: 210 AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL 269
Query: 460 AAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH 518
A +L +PA+ L S + + +G G+ L LGP + GL+
Sbjct: 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 1/148 (0%)
Query: 371 LCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLG 430
L + FL+ L + L +YL +G + + + AQ + G L + G
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 431 AKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQG 489
+ ++IGL+ L L+ F S +W++ +L L +PA +AL++ + +G
Sbjct: 61 RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERG 120
Query: 490 LVQGMVTGMRGLCNGLGPAMFGLIFYMF 517
G+++ GL LGP + GL+ +F
Sbjct: 121 RALGLLSAGFGLGAALGPLLGGLLASLF 148
|
Length = 346 |
| >gnl|CDD|182213 PRK10054, PRK10054, putative transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 63/288 (21%), Positives = 121/288 (42%), Gaps = 28/288 (9%)
Query: 192 ISISGVFAVTFSVVFAYVADVTEEHERSL----AYGLKFIALKIILMTLDTWWFFAMISI 247
++I+ V FS+ F +AD ++ L A+ FIA+ ++ FFA+I+
Sbjct: 49 MTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINC 108
Query: 248 SGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYS 307
+ ++V +V+ A+ AD ++ + L+++ + T P LG L S
Sbjct: 109 A--YSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVG------PPLGTLL-VMQS 159
Query: 308 LSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQT 367
++L +A + + FI + V S A W P L+ D+
Sbjct: 160 INLPFWLAAICSAFPLVFIQIWVQRSEK-----AIATETGSVW---SPSVLLQ----DKA 207
Query: 368 ILMLCVTVFLSYLPEAGQYSCLFVYLKLVM--GFDEVHVAVFIAVIGTLSVSAQIILGCL 425
+L + FL+ SC+ Y+ +V F E VAV + V + VS Q +G
Sbjct: 208 LLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRR 267
Query: 426 MNVLGAKHTIIIGLVFEMLQLMWYGF-GSQMWMMWAAGILASLASITY 472
+N + + G + ++ L+ + F G+ + + + + ++ I Y
Sbjct: 268 LNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIY 315
|
Length = 395 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 61/381 (16%), Positives = 117/381 (30%), Gaps = 51/381 (13%)
Query: 191 MISISGVFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMIS--IS 248
+I+ + + + A + E R L L + +L L + +++ ++
Sbjct: 53 LITAYALGVALGAPLLALLTGRLERR-RLLLGLLALFIVSNLLSALAPSFAVLLLARALA 111
Query: 249 GV-FAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYS 307
G+ V +S+ A A + +R A L V + V LG +L + +
Sbjct: 112 GLAHGVFWSIAAALAARLVPPGKRGRALAL------VFTGLTLATVLGVPLGTFLGQLFG 165
Query: 308 LSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQT 367
+A+L + + +P S P +L ++ +
Sbjct: 166 WRATFLAIAVLALLALLLLWKLLPPSEISG-------------SLPGPLRTLLRLLRRPG 212
Query: 368 ILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMN 427
+L+ + FL Y+ + +L+ V GF V++ + G ++ G L +
Sbjct: 213 VLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLAD 272
Query: 428 VLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLASITYPAISALVSMHSDADR 487
+ I L+ + L G+ + A L A D
Sbjct: 273 RGPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDA 332
Query: 488 QGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIP 547
L + L LG A+ GL+
Sbjct: 333 ADLAGSLNVAAFNLGIALGAALGGLVLDALGY---------------------------- 364
Query: 548 GPPFVFGALLVIAALLVATFI 568
GA L++ ALL+A
Sbjct: 365 AATGWVGAALLLLALLLALLS 385
|
Length = 394 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 2/151 (1%)
Query: 368 ILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMN 427
+L+L + FLS L L + + +G + ++ ++ G L +
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSD 59
Query: 428 VLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDAD 486
G + +++GL+ L + F S +W++ L L YPA +AL++
Sbjct: 60 RFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK 119
Query: 487 RQGLVQGMVTGMRGLCNGLGPAMFGLIFYMF 517
+G G+ + GL LGP + GL+
Sbjct: 120 ERGRALGLFSAGFGLGALLGPLLGGLLAESL 150
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 58/308 (18%), Positives = 113/308 (36%), Gaps = 23/308 (7%)
Query: 219 SLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVF-AYVADVTEE-HERSLAYG 276
+++ L F + MT + F + G+ ++ + + + +T + ER+
Sbjct: 81 AISLVLLFATPFGLSMTAKLIYAFITYILLGLAYTFVNIPYWSLIPVLTRDPKERTSLAS 140
Query: 277 LSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPE 336
+ + A V +P L A L A +AIL V L+ E
Sbjct: 141 YRRIGATIGGLLVA--VIAPPLVALLGGGNGAKGYFLAALIIAILAVVGFLICFA-GTKE 197
Query: 337 KVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLV 396
+V +S + + K++ +L+L + L+ L A + L Y V
Sbjct: 198 RVSVPPEQKEKVSL-----RDMFKALFKNRPLLILLLLYLLNALAMAVRNGLLLYYFTYV 252
Query: 397 MGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMW 456
+G +V + + ++ + L G K T ++G++ + L+ F
Sbjct: 253 LGNAG-LFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFF-LPPG 310
Query: 457 MMWAAGILASLASITYPAISALV-SMHSDA----------DRQGLVQGMVTGMRGLCNGL 505
+W +L LA I + L +M +D R+G+ + + L L
Sbjct: 311 SLWLFLVLVVLAGIGLGLATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLGGAL 370
Query: 506 GPAMFGLI 513
G A+ GL+
Sbjct: 371 GGAIVGLL 378
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.004
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 137 GLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDT--WWFFAMISI 194
GL++ + +PL G L+D +GRK LL+ +F+ L + L + +
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 195 SGVFAVTFSV-VFAYVADVTEEHERSLAYGL 224
G A V A +AD+ ER +A GL
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGL 91
|
Length = 141 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 594 | |||
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.98 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.98 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.98 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.98 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.98 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.97 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.97 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.97 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.97 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.97 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.97 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.97 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.97 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.97 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.97 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.97 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.97 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.97 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.97 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.97 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.97 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.97 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.97 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.96 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.96 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.96 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.96 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.95 | |
| KOG2532|consensus | 466 | 99.95 | ||
| KOG2615|consensus | 451 | 99.95 | ||
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.94 | |
| KOG0569|consensus | 485 | 99.94 | ||
| KOG3764|consensus | 464 | 99.94 | ||
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.93 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.93 | |
| KOG1330|consensus | 493 | 99.93 | ||
| KOG2504|consensus | 509 | 99.93 | ||
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.92 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.92 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.92 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.92 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.91 | |
| KOG2816|consensus | 463 | 99.91 | ||
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.91 | |
| KOG2533|consensus | 495 | 99.91 | ||
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.91 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.91 | |
| KOG0254|consensus | 513 | 99.91 | ||
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.9 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.9 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.9 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.89 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.89 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.89 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.89 | |
| KOG0255|consensus | 521 | 99.88 | ||
| PRK11462 | 460 | putative transporter; Provisional | 99.87 | |
| KOG0253|consensus | 528 | 99.86 | ||
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.86 | |
| KOG0252|consensus | 538 | 99.85 | ||
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.84 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.84 | |
| KOG4686|consensus | 459 | 99.83 | ||
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.83 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.82 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.82 | |
| KOG2325|consensus | 488 | 99.79 | ||
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.68 | |
| KOG2563|consensus | 480 | 99.64 | ||
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.58 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.57 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.53 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.49 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.48 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.47 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.47 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.47 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.47 | |
| KOG3626|consensus | 735 | 99.44 | ||
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.44 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.44 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.43 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.43 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.42 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.42 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.42 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.42 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.41 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.41 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.41 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.4 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.4 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.4 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.4 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.39 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.38 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.38 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.38 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.37 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.37 | |
| KOG3762|consensus | 618 | 99.36 | ||
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.36 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.36 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.36 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.36 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.35 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.35 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.35 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.34 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.34 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.34 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.34 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.33 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.33 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.33 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.32 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.32 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.31 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.31 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.31 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.29 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.29 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.28 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.28 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.27 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.27 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.27 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.25 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.25 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.25 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.25 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.25 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.24 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.24 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.23 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.22 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.22 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.2 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.19 | |
| KOG0637|consensus | 498 | 99.18 | ||
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.15 | |
| KOG3764|consensus | 464 | 99.14 | ||
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.14 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.14 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.13 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.12 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.11 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.1 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.1 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.09 | |
| KOG4332|consensus | 454 | 99.09 | ||
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.09 | |
| KOG1330|consensus | 493 | 99.09 | ||
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.08 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.08 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.06 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.06 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.06 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 99.05 | |
| KOG2615|consensus | 451 | 99.05 | ||
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.05 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.05 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.02 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.01 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.01 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.98 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.97 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.95 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.92 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.91 | |
| KOG3098|consensus | 461 | 98.9 | ||
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.9 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.88 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.86 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.85 | |
| KOG2532|consensus | 466 | 98.77 | ||
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.69 | |
| KOG0569|consensus | 485 | 98.67 | ||
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.67 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.66 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.66 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.65 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.63 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.62 | |
| KOG4686|consensus | 459 | 98.6 | ||
| KOG0254|consensus | 513 | 98.58 | ||
| KOG0255|consensus | 521 | 98.58 | ||
| KOG3574|consensus | 510 | 98.55 | ||
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.54 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.54 | |
| KOG3810|consensus | 433 | 98.52 | ||
| KOG2504|consensus | 509 | 98.51 | ||
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.5 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.5 | |
| KOG2533|consensus | 495 | 98.5 | ||
| KOG3762|consensus | 618 | 98.45 | ||
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.45 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.44 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.43 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.35 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.27 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.26 | |
| KOG2325|consensus | 488 | 98.15 | ||
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.14 | |
| KOG0253|consensus | 528 | 98.03 | ||
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.02 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.01 | |
| KOG0252|consensus | 538 | 98.0 | ||
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.91 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.91 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.88 | |
| KOG2816|consensus | 463 | 97.84 | ||
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.78 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.77 | |
| KOG2563|consensus | 480 | 97.75 | ||
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.72 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.64 | |
| KOG1237|consensus | 571 | 97.62 | ||
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.44 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.41 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.4 | |
| KOG3626|consensus | 735 | 97.29 | ||
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.07 | |
| KOG1479|consensus | 406 | 97.0 | ||
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.88 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.75 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.6 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.53 | |
| KOG3097|consensus | 390 | 96.52 | ||
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.51 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.18 | |
| KOG2601|consensus | 503 | 96.13 | ||
| KOG3880|consensus | 409 | 96.07 | ||
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.68 | |
| KOG0637|consensus | 498 | 95.58 | ||
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 95.56 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.07 | |
| KOG4830|consensus | 412 | 94.94 | ||
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 94.52 | |
| KOG1237|consensus | 571 | 94.4 | ||
| KOG4332|consensus | 454 | 93.83 | ||
| KOG3098|consensus | 461 | 93.05 | ||
| KOG3574|consensus | 510 | 90.41 | ||
| KOG1479|consensus | 406 | 87.3 |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=293.20 Aligned_cols=355 Identities=19% Similarity=0.244 Sum_probs=305.0
Q ss_pred hhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHH
Q psy16660 116 LTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMIS 193 (594)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~ 193 (594)
+..+.+|++.+|++.+..+. |++.++|.++..+++|+...+.||+.||++++....++.++.++ +++|++.++++|+
T Consensus 31 v~~gLLp~iA~dl~vs~~~a-G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~ 109 (394)
T COG2814 31 VPVGLLPPIAADLGVSEGAA-GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARA 109 (394)
T ss_pred HHHhchHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 47899999999999998877 99999999999999999999999999999999999999999877 7889999999999
Q ss_pred HHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhh
Q psy16660 194 ISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERS 272 (594)
Q Consensus 194 l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~ 272 (594)
+.|+. +..++...++..+..|+++|++++++
T Consensus 110 ~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiai------------------------------------------------ 141 (394)
T COG2814 110 LAGLAHGVFWSIAAALAARLVPPGKRGRALAL------------------------------------------------ 141 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccchhhHHHH------------------------------------------------
Confidence 99998 88999999999999999999999999
Q ss_pred hhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCCcccc
Q psy16660 273 LAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQ 352 (594)
Q Consensus 273 ~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~ 352 (594)
...+.+++.++|..+|.++.+.+|||.+|++.+.++++.++..+..+| +++..++ .
T Consensus 142 -----------v~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~-----------~ 197 (394)
T COG2814 142 -----------VFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGS-----------L 197 (394)
T ss_pred -----------HHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCC-----------C
Confidence 999999999999999999999999999999999999999998888898 1111111 1
Q ss_pred CCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Q psy16660 353 ADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAK 432 (594)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~ 432 (594)
+.+..+..+.+|+|.++...+..++.+..++..++|+-+++++..|++....++.+..++++.++|..++|++.|| +.+
T Consensus 198 ~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~ 276 (394)
T COG2814 198 PGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR 276 (394)
T ss_pred CcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch
Confidence 1233445567799999999999999999999999999999999999999999999999999999999999999999 888
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHH
Q psy16660 433 HTIIIGLVFEMLQLMWYGFG-SQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMF 510 (594)
Q Consensus 433 ~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~ 510 (594)
+.+.....+..+.++.+.+. ++.+...+..++.|+. ...........++ ..+|.++.+.+++....|+|..+|..++
T Consensus 277 ~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lG 355 (394)
T COG2814 277 RALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALG 355 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777777766654 4555666666666666 4444555555565 3368899999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhccCccc
Q psy16660 511 GLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIPESIV 573 (594)
Q Consensus 511 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 573 (594)
|.++|+.|+. ...++++++.++++++.+...+.++
T Consensus 356 G~v~~~~g~~----------------------------~~~~~~a~l~~~a~~~~~~~~~~~~ 390 (394)
T COG2814 356 GLVLDALGYA----------------------------ATGWVGAALLLLALLLALLSARKDR 390 (394)
T ss_pred HHHHHhhchH----------------------------HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999997765 6788888888888777766554433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=299.53 Aligned_cols=348 Identities=15% Similarity=0.196 Sum_probs=281.5
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHH
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISI 194 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l 194 (594)
..+++|.+.++++.+..+. |++.+.+.+++.+++++.|.++||+|||+++..+.++.+++..+ ++.|++++++.|++
T Consensus 28 ~~~~~~~l~~~~~~s~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ 106 (390)
T PRK03545 28 PVGLLSDIAQSFHMQTAQV-GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIG 106 (390)
T ss_pred HHcchHHHHhHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 5677899999999987766 99999999999999999999999999999999998888888666 56799999999999
Q ss_pred HHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhh
Q psy16660 195 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSL 273 (594)
Q Consensus 195 ~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~ 273 (594)
+|++ +...+...+++.|++|+++|++++|+
T Consensus 107 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~------------------------------------------------- 137 (390)
T PRK03545 107 IAFAHAIFWSITASLAIRVAPAGKKAQALSL------------------------------------------------- 137 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhhhhHHHH-------------------------------------------------
Confidence 9998 55677889999999999999999999
Q ss_pred hhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCCccccC
Q psy16660 274 AYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQA 353 (594)
Q Consensus 274 ~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~ 353 (594)
.+.+.++|..+||.+++.+.+++|||+.|++.+++.++..+..+..+||.++++ +
T Consensus 138 ----------~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~---------------~ 192 (390)
T PRK03545 138 ----------LATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEH---------------S 192 (390)
T ss_pred ----------HHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC---------------c
Confidence 999999999999999999999899999999999887776665555566543211 0
Q ss_pred CchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q psy16660 354 DPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKH 433 (594)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~ 433 (594)
+..++.++.+|+|.++......++.........++.+.|+++.+|.++.+.+.+....+++.+++.++.+++.||+++|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~ 272 (390)
T PRK03545 193 GSLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF 272 (390)
T ss_pred chHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH
Confidence 12244567778898877666666655555666677888888878999999999999999999999999999999999876
Q ss_pred HHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHH
Q psy16660 434 TIIIGLVFEMLQLM-WYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFG 511 (594)
Q Consensus 434 ~l~~~~~~~~i~~~-~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g 511 (594)
.. .+..+..++.. +....++.+..++..++.|++ ....+...+.+.+..| +++++++|+++...++|..+||.++|
T Consensus 273 ~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G 350 (390)
T PRK03545 273 LL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGN 350 (390)
T ss_pred HH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 44444444433 334455667777777788887 5556667777778765 68899999999999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhcc
Q psy16660 512 LIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIP 569 (594)
Q Consensus 512 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 569 (594)
.++|..|++ ..|...+++.+++.+......
T Consensus 351 ~~~~~~g~~----------------------------~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 351 QVSLHLGLS----------------------------SIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHhccChh----------------------------HHHHHHHHHHHHHHHHHHHHc
Confidence 999988765 677777777777766665444
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=284.70 Aligned_cols=351 Identities=14% Similarity=0.159 Sum_probs=286.5
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh
Q psy16660 101 HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL 180 (594)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~ 180 (594)
.++...++..++.+. ..+.+|.+..+.+.+..+. |++.+++.++..++.++.|+++||+|||++++.+.++..++..+
T Consensus 3 ~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~-g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~ 80 (365)
T TIGR00900 3 LLFAAQLISLIGTAI-TQVALPLYVLAGTGSASVL-SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAV 80 (365)
T ss_pred ehHHHHHHHHHHHHH-HHHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHH
Confidence 355677888888777 7889999999988777666 99999999999999999999999999999999887766655444
Q ss_pred --hcc-----hHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccc
Q psy16660 181 --MTL-----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFA 252 (594)
Q Consensus 181 --~~~-----~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 252 (594)
+.. +++.+++.|++.|++ +...+...+++.|++|+++|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 132 (365)
T TIGR00900 81 LPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSL---------------------------- 132 (365)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhH----------------------------
Confidence 344 899999999999998 56677889999999999999999998
Q ss_pred hhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhee-cc
Q psy16660 253 VTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVA-VP 331 (594)
Q Consensus 253 ~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~-l~ 331 (594)
.+....+|.++||.+++++.+..|||+.|++.++..++..+..+.. .|
T Consensus 133 -------------------------------~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (365)
T TIGR00900 133 -------------------------------SQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIP 181 (365)
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999998887666655443332 23
Q ss_pred CCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhCCChhHHHHHHHH
Q psy16660 332 ESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQY-SCLFVYLKLVMGFDEVHVAVFIAV 410 (594)
Q Consensus 332 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~ 410 (594)
|++++++++.+ +...++..+.++..+++|.++..++..++......... .+.|.|.++.+|.++.+.+.+...
T Consensus 182 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (365)
T TIGR00900 182 ELAASEIQALS------NAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAA 255 (365)
T ss_pred cCCCccccccc------hhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHH
Confidence 32211111000 00111233456677789999888887777777666665 788888888789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccc
Q psy16660 411 IGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQ-MWMMWAAGILASLA-SITYPAISALVSMHSDADRQ 488 (594)
Q Consensus 411 ~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~ 488 (594)
..++.+++.++.+++.||.++++.+..+..+.++++.++.+.++ .+..++..++.|++ +...+...+++.+.+|+++|
T Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 335 (365)
T TIGR00900 256 FGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELL 335 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999988888777777777776664 67777778888888 77888999999999999999
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy16660 489 GLVQGMVTGMRGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 489 g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g 518 (594)
|++.|+.+...+++..++|.+.|.+.|..|
T Consensus 336 g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 336 GRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999998754
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=291.77 Aligned_cols=354 Identities=15% Similarity=0.163 Sum_probs=281.3
Q ss_pred CCchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhh
Q psy16660 96 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 175 (594)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~ 175 (594)
++.+..++...++..++.+. ..+.+|.+.++++.+..+. |++.+.+.++..+++++.|+++||+|||+++..+.++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~-g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~ 93 (417)
T PRK10489 16 HPAFRAVFIARFISIFGLGL-LGVAVPVQIQMMTGSTLQV-GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCG 93 (417)
T ss_pred CCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHH
Confidence 34455566667788888777 7889999998888766555 999999999999999999999999999999887766655
Q ss_pred hhhhh-------hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhh
Q psy16660 176 LPIPL-------MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISI 247 (594)
Q Consensus 176 i~~~~-------~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 247 (594)
++... ...+++.+++.|+++|++ +...+...+++.|++|+++|+++.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 150 (417)
T PRK10489 94 LGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAI----------------------- 150 (417)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHH-----------------------
Confidence 54332 134788899999999998 44567778899999999999999988
Q ss_pred ccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhh
Q psy16660 248 SGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFIL 327 (594)
Q Consensus 248 ~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~ 327 (594)
.....++|..+||.+++++.+..+|++.|++.++..++..++ .
T Consensus 151 ------------------------------------~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~-~ 193 (417)
T PRK10489 151 ------------------------------------TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLP-L 193 (417)
T ss_pred ------------------------------------HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-H
Confidence 888899999999999999998889999999888776665544 4
Q ss_pred eeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHH
Q psy16660 328 VAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVF 407 (594)
Q Consensus 328 ~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~ 407 (594)
+.+||.+++++++++ ..++..+.++..+++|.++...+..++... ......+.|.|.++.+|.++.+.|++
T Consensus 194 ~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~ 264 (417)
T PRK10489 194 LRLPALPPPPQPREH--------PLRSLLAGFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLL 264 (417)
T ss_pred HhCCCCCCCCccccc--------chHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHH
Confidence 456765432211100 111223445666788887666555444333 34566788999998889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCc
Q psy16660 408 IAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDAD 486 (594)
Q Consensus 408 ~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~ 486 (594)
.+...++.+++.++.+++.||.++++.+..+.++.+++++++...++.+...+..++.|++ +...+...+++.+..|++
T Consensus 265 ~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 344 (417)
T PRK10489 265 YAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDE 344 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Confidence 9999999999999999999998878888888888888887777777777777777778887 666677788999999999
Q ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 487 RQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 487 ~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
.||+++|+.+...++|..+||.+.|.+.+..|..
T Consensus 345 ~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~ 378 (417)
T PRK10489 345 MLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPV 378 (417)
T ss_pred HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchh
Confidence 9999999999999999999999999999987754
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-32 Score=287.35 Aligned_cols=349 Identities=17% Similarity=0.142 Sum_probs=272.2
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh-
Q psy16660 102 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL- 180 (594)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~- 180 (594)
.+...+++.+.... ..+..|.+.++++.++.+. |++.+.+.++..++.++.|+++||+|||+++..+.++..++.++
T Consensus 20 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 97 (406)
T PRK11551 20 CFLVALLEGLDLQS-AGVAAPRMAQEFGLDVAQM-GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLAT 97 (406)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 33444555555444 6777888999988876666 99999999999999999999999999999999988777666554
Q ss_pred -hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhh
Q psy16660 181 -MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVV 258 (594)
Q Consensus 181 -~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 258 (594)
++.+++.+++.|++.|++ +...+...+++.|++|+++|++++++
T Consensus 98 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---------------------------------- 143 (406)
T PRK11551 98 AQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSL---------------------------------- 143 (406)
T ss_pred HHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHH----------------------------------
Confidence 567999999999999998 66777889999999999999999999
Q ss_pred hhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhh
Q psy16660 259 FAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKV 338 (594)
Q Consensus 259 ~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~ 338 (594)
......+|..+++.+++.+.+..+|++.|++.+++.++..++..+++||++++..
T Consensus 144 -------------------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 198 (406)
T PRK11551 144 -------------------------MYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQ 198 (406)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHh
Confidence 8888999999999999888888899999999887766666555666788754432
Q ss_pred ccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy16660 339 RQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSA 418 (594)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~ 418 (594)
++.+.+ +++.......+..+++..+.+....++..........+.|.|+++ .|+++.+.+.......++.+++
T Consensus 199 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~ 271 (406)
T PRK11551 199 AAGAGK------QRAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALG 271 (406)
T ss_pred ccCcch------hhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHH
Confidence 221100 011111111111122333444444444444555666788888877 6999999999999999999999
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHH
Q psy16660 419 QIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTG 497 (594)
Q Consensus 419 ~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 497 (594)
.++.|++.||+++|+.+..+.+...++++++...++.+.+.+..++.+++ +...+...++..+.+|+++||++.|+.+.
T Consensus 272 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 351 (406)
T PRK11551 272 SLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVA 351 (406)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHH
Confidence 99999999999999998887777777777666666666666666677776 66778888999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhh
Q psy16660 498 MRGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 498 ~~~lg~~lg~~~~g~l~~~~g 518 (594)
...+|..++|.++|.+.++.+
T Consensus 352 ~~~~g~~~g~~~~g~l~~~~~ 372 (406)
T PRK11551 352 VGRLGSMAGPLLAGQLLALGR 372 (406)
T ss_pred hhhHHHHHHhhhHhhhhccCC
Confidence 999999999999999988643
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=289.57 Aligned_cols=343 Identities=15% Similarity=0.138 Sum_probs=254.8
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHH
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISI 194 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l 194 (594)
..+.+|.+.++++.+..+. |++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++ ++.+++.+++.|++
T Consensus 42 ~~~~~~~~~~~~g~s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 120 (434)
T PRK11663 42 FNAAMPEMLADLGLSRSDI-GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVL 120 (434)
T ss_pred HHHhhHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5778899999998887766 99999999999999999999999999999999998888877766 56689999999999
Q ss_pred HHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhh
Q psy16660 195 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSL 273 (594)
Q Consensus 195 ~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~ 273 (594)
.|++ +...+...+++.+++|+++|++++++
T Consensus 121 ~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~------------------------------------------------- 151 (434)
T PRK11663 121 NAFFQGWGWPVCAKLLTAWYSRTERGGWWAI------------------------------------------------- 151 (434)
T ss_pred HHHHHHccchHHHHHHHHhCCHHHHHHHHHH-------------------------------------------------
Confidence 9997 55667888999999999999999999
Q ss_pred hhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccC--CCCCC--CCc
Q psy16660 274 AYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQA--SWGGA--PIS 349 (594)
Q Consensus 274 ~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~--~~~~~--~~~ 349 (594)
.+...++|.+++|.+++++.+.+|||+.|++.+++.++..++..+.+||++++...+. ++.++ +.+
T Consensus 152 ----------~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 221 (434)
T PRK11663 152 ----------WNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELA 221 (434)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccc
Confidence 9999999999999999999998999999999887766655555555777653321110 00000 000
Q ss_pred cc---cCCchhh-H-hhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy16660 350 WE---QADPFAS-L-RKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGC 424 (594)
Q Consensus 350 ~~---~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~ 424 (594)
.+ .+...++ + +..++++.++.+.+..++.+........++|.|+.+.+|++..+.+...+...++.+++.++.|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~ 301 (434)
T PRK11663 222 QQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGW 301 (434)
T ss_pred hhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 0111112 1 12557888888888777777777778889999998878999999999999999999999999999
Q ss_pred HHHhh--chHHHH-HH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHH
Q psy16660 425 LMNVL--GAKHTI-II---GLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTG 497 (594)
Q Consensus 425 l~dr~--g~~~~l-~~---~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 497 (594)
+.||+ ++|+.. .. +..+..+++..+. ..+.+......+..|++ ............+..|++++|++.|+.+.
T Consensus 302 l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 380 (434)
T PRK11663 302 GSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGL 380 (434)
T ss_pred hHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHH
Confidence 99998 322222 11 2222222222222 22222222233333333 22222334566888999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 498 MRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 498 ~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
..++|++++|.++|.+.|..|++
T Consensus 381 ~~~~g~~~~p~~~g~l~~~~g~~ 403 (434)
T PRK11663 381 FAYLGAALSGYPLAKVLEIWHWT 403 (434)
T ss_pred HHHHHHHHhcccHHHHHHhcccH
Confidence 99999999999999999987755
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-32 Score=295.30 Aligned_cols=355 Identities=18% Similarity=0.220 Sum_probs=288.1
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhh
Q psy16660 100 YHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIP 179 (594)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~ 179 (594)
..+.+..++..+.... +...+|.+.++++.+..+. +|+.+.+.++..++.+++|+++||+|||++++++.++.+++.+
T Consensus 9 ~~~~~~~~~~~ld~ti-v~~a~p~i~~~l~~s~~~~-~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~ 86 (495)
T PRK14995 9 VIIVLVYIPVAIDATV-LHVAAPTLSMTLGASGNEL-LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL 86 (495)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3444555555555555 7888999999998887766 9999999999999999999999999999999999988888766
Q ss_pred h--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhccc-ccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhh
Q psy16660 180 L--MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVT-EEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTF 255 (594)
Q Consensus 180 ~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~-~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 255 (594)
+ ++.|++.++++|+++|+| ++..+.....+.+.+ |+++|++++|+
T Consensus 87 ~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~------------------------------- 135 (495)
T PRK14995 87 AAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGV------------------------------- 135 (495)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------
Confidence 6 667999999999999998 556667777776665 67889999988
Q ss_pred hhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCc
Q psy16660 256 SVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLP 335 (594)
Q Consensus 256 ~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~ 335 (594)
+.....+|..+||.+++++.++.|||+.|++...+.++.+++..+.+||+++
T Consensus 136 ----------------------------~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~ 187 (495)
T PRK14995 136 ----------------------------WAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG 187 (495)
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999999999999999988888877777777887643
Q ss_pred hhhccCCCCCC-----------------C-------------------------CccccCCchhhHhhhccchhHHHHHH
Q psy16660 336 EKVRQASWGGA-----------------P-------------------------ISWEQADPFASLRKVGKDQTILMLCV 373 (594)
Q Consensus 336 ~~~~~~~~~~~-----------------~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (594)
++.++.+..+. . .+.+.+++..++ +++|+|.+....+
T Consensus 188 ~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~-~lf~~~~~~~~~~ 266 (495)
T PRK14995 188 RRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDM-RLFTHRIILSGVV 266 (495)
T ss_pred CCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCH-HHhCCcccHHHHH
Confidence 32222211100 0 001112233333 4568888888877
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhh--
Q psy16660 374 TVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGF-- 451 (594)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~-- 451 (594)
..++......+...++|.|+++.+|.++.++|+.+....++..++.++.|++.||+|+|+.+..+.++.+++..++..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~ 346 (495)
T PRK14995 267 MAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD 346 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777777788999999999999999999999999999999999999999999999988888888777665543
Q ss_pred -hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16660 452 -GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYM 516 (594)
Q Consensus 452 -~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~ 516 (594)
.++.+..+...++.|++ +...+.....+.+.+|++++|.+.++.++.+++|+.+|+.+.|.+++.
T Consensus 347 ~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 347 FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455566777888998 888888888888999999999999999999999999999999999875
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=294.25 Aligned_cols=375 Identities=13% Similarity=0.114 Sum_probs=272.1
Q ss_pred hhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh-------hcchHHHH
Q psy16660 116 LTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL-------MTLDTWWF 188 (594)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~-------~~~~~~~l 188 (594)
+..+..|.+.++++.+..+. |++.+++.+++.++.++.|+++||+|||+++..+.++.++..++ .+.+++.+
T Consensus 47 ~~~~~~~~i~~~~~~s~~~~-g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 125 (467)
T PRK09556 47 NFKAAQNDMISTYGLSTTEL-GMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLM 125 (467)
T ss_pred ChhhhhHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 35677899999999887776 99999999999999999999999999999988877666555443 24689999
Q ss_pred HHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchh
Q psy16660 189 FAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTE 267 (594)
Q Consensus 189 ~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~ 267 (594)
++.|+++|++ +...+...+++.|++|+++|++++|+
T Consensus 126 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi------------------------------------------- 162 (467)
T PRK09556 126 IALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGF------------------------------------------- 162 (467)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEe-------------------------------------------
Confidence 9999999998 66778888999999999999999999
Q ss_pred hhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCC-
Q psy16660 268 EHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTY---SLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASW- 343 (594)
Q Consensus 268 ~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~---gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~- 343 (594)
++.+.++|.++++.+..++.+.. +|+..|.+.+++.++..++.+++.++++++.....+.
T Consensus 163 ----------------~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~ 226 (467)
T PRK09556 163 ----------------WNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEE 226 (467)
T ss_pred ----------------eecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhh
Confidence 88888999999999888776653 6999998888777766555555556554321110000
Q ss_pred --CCC---CCc-c-ccC-Cchhh-HhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy16660 344 --GGA---PIS-W-EQA-DPFAS-LRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTL 414 (594)
Q Consensus 344 --~~~---~~~-~-~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~ 414 (594)
.+. +.+ . +++ ...+. .+..+++|.+|...+..++.+....+...+.|.|+++.+|++..+.+.......++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~ 306 (467)
T PRK09556 227 IFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIG 306 (467)
T ss_pred cccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 000 000 0 000 11111 22367899999999888888888788888999999998999999999999999999
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHH
Q psy16660 415 SVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLM--WYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLV 491 (594)
Q Consensus 415 ~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~--~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~ 491 (594)
.+++.++.|+++||+++|+.+.....+..++.. .+...++.+...+..++.|+. ............|..|++.+|++
T Consensus 307 ~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a 386 (467)
T PRK09556 307 ALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVA 386 (467)
T ss_pred HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHH
Confidence 999999999999999988776655443333322 222233444444555555544 22222334566799999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHHHHHH-h-hccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhc
Q psy16660 492 QGMVTGMRGL-CNGLGPAMFGLIFYM-F-HVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFI 568 (594)
Q Consensus 492 ~g~~~~~~~l-g~~lg~~~~g~l~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 568 (594)
.|+.+...++ |.+++|.+.|.+.|. . |.. ...+...++...|.+..++.+++.+..+.+
T Consensus 387 ~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~------------------~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 387 NGIKGTFAYLFGDSFAKVGLGMIADPTKNGTP------------------IFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHHHHHHHHhHHHHhhhHHHHhcccccccc------------------cccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999997 779999999999982 1 000 000112335577777777777766665544
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=288.53 Aligned_cols=360 Identities=14% Similarity=0.171 Sum_probs=285.2
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhh
Q psy16660 98 SVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLP 177 (594)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~ 177 (594)
.++.+....++..+.... ..+.+|.+.++++.+..+. |++.+.+.++..++.+++|+++||+|||++++.+.++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~g~s~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 88 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTI-VNTALPSMAQSLGESPLHM-HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG 88 (471)
T ss_pred HHHHHHHHHHHHHHhHHH-HHHHHHHHHHHhCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 345566666666666666 7889999999998887666 99999999999999999999999999999998887777666
Q ss_pred hhh--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchh
Q psy16660 178 IPL--MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVT 254 (594)
Q Consensus 178 ~~~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 254 (594)
.++ ++.+++.+++.|+++|++ +...+...+++.|.+|+++|++++++
T Consensus 89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 138 (471)
T PRK10504 89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTF------------------------------ 138 (471)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHH------------------------------
Confidence 554 566899999999999998 66778889999999999999999998
Q ss_pred hhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCC
Q psy16660 255 FSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESL 334 (594)
Q Consensus 255 ~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~ 334 (594)
.+...++|..+||.+++++.++.|||+.|++..+...+..+......|+.+
T Consensus 139 -----------------------------~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 189 (471)
T PRK10504 139 -----------------------------VTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYT 189 (471)
T ss_pred -----------------------------HHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 888999999999999999999999999999988777776666555555543
Q ss_pred chhhccCCC------------------CCCCC------------------------ccccCCchhhHhhhccchhHHHHH
Q psy16660 335 PEKVRQASW------------------GGAPI------------------------SWEQADPFASLRKVGKDQTILMLC 372 (594)
Q Consensus 335 ~~~~~~~~~------------------~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 372 (594)
....+ .+. +.+.. +.+..++..+. +++|||.++..+
T Consensus 190 ~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~l 267 (471)
T PRK10504 190 MQTRR-FDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSL-KLFRTRTFSLGL 267 (471)
T ss_pred ccCCC-CChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCH-HHhcccchHHHH
Confidence 22111 110 00000 00111122233 356899998888
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh
Q psy16660 373 VTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFG 452 (594)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~ 452 (594)
...++.+........+.|+|+++.+|.++.+.++......++.+++.++.+++.||+|+|+++..+..+..++..++.+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 347 (471)
T PRK10504 268 AGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLV 347 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhc
Confidence 88888777776777788899988889999999999999999998999999999999999999998888777766655542
Q ss_pred ---hhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 453 ---SQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 453 ---~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
++.+......++.|++ +...+..+.+..+.+|++++|.++|+.++..++|..+|+.+.|.+.+..|+.
T Consensus 348 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 348 ALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2233334455566677 7777888899999999999999999999999999999999999999998864
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=280.64 Aligned_cols=331 Identities=14% Similarity=0.117 Sum_probs=253.4
Q ss_pred HHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHH
Q psy16660 110 FFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWW 187 (594)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~ 187 (594)
...|.. +.|.+|.+.++++.+..+. |++.+.+.+++.+++++.|+++||+|||+++..+......+... .+.++++
T Consensus 4 ~~~~~~-~~~~lp~i~~~~~~s~~~~-g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (368)
T TIGR00903 4 QAIWVT-FSPVLSLVAEDIDVSKEEL-GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEW 81 (368)
T ss_pred hHHHHH-HHhhHHHHHHHhCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 344555 7899999999999887766 99999999999999999999999999998876655554444332 2368999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchh
Q psy16660 188 FFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTE 267 (594)
Q Consensus 188 l~~~r~l~Gi~~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~ 267 (594)
+++.|+++|++.+........++|++|+++|++++++
T Consensus 82 l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~------------------------------------------- 118 (368)
T TIGR00903 82 LLACQLLAALGQPFLLNAFAPAASQIREERRDLVISL------------------------------------------- 118 (368)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHH-------------------------------------------
Confidence 9999999999955566667777999999999999999
Q ss_pred hhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCC
Q psy16660 268 EHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAP 347 (594)
Q Consensus 268 ~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~ 347 (594)
...+..+|.++++++++++.+++|||+.|++.++++++..++.++.+||+++++.+..
T Consensus 119 ----------------~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~------ 176 (368)
T TIGR00903 119 ----------------LSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGF------ 176 (368)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCc------
Confidence 9999999999999999999999999999999888888877777778898764422110
Q ss_pred CccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16660 348 ISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMN 427 (594)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~d 427 (594)
+.++..++++++++||.+|.+.+..++....+++..+|+|.|+++ .|++.. .+.......+...++ .+++.|
T Consensus 177 ---~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d 248 (368)
T TIGR00903 177 ---GFKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPD 248 (368)
T ss_pred ---chHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhH
Confidence 001112457788899999999999999999999999999999976 577754 566555555555544 356666
Q ss_pred hhch---HHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHH
Q psy16660 428 VLGA---KHTII-IGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLC 502 (594)
Q Consensus 428 r~g~---~~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg 502 (594)
|..| |+... ...++.++.+..+....+.+..+....+.+++ ...++..+++.+|.+|++.||++.|+.+...+++
T Consensus 249 ~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~ 328 (368)
T TIGR00903 249 RVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAI 328 (368)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHH
Confidence 6543 33333 23444444444444444444444444455555 5566778889999999999999999999999999
Q ss_pred HhHHHHHHHHHHH
Q psy16660 503 NGLGPAMFGLIFY 515 (594)
Q Consensus 503 ~~lg~~~~g~l~~ 515 (594)
+.++|.+.+.+..
T Consensus 329 ~~~~~~~~~~~~~ 341 (368)
T TIGR00903 329 SVALALAAMLFIS 341 (368)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988873
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=277.87 Aligned_cols=327 Identities=13% Similarity=0.183 Sum_probs=261.7
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHH
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISI 194 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l 194 (594)
..+.+|.+.++++.+..+. |+..+++.++..++.++.|+++||+|||++++.+.++.+++.++ ++.+++++++.|++
T Consensus 39 ~~~~l~~~~~~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 117 (394)
T PRK10213 39 PVSLLTPMAQDLGISEGVA-GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRAC 117 (394)
T ss_pred HHhhHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 4668899999998887766 99999999999999999999999999999999998888877666 56689999999999
Q ss_pred HHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhh
Q psy16660 195 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSL 273 (594)
Q Consensus 195 ~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~ 273 (594)
+|++ +...+...+++.|++|+++|++++++
T Consensus 118 ~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~------------------------------------------------- 148 (394)
T PRK10213 118 LGLALGGFWAMSASLTMRLVPPRTVPKALSV------------------------------------------------- 148 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHcCHhHHHHHHHH-------------------------------------------------
Confidence 9998 66778889999999999999999999
Q ss_pred hhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCCccccC
Q psy16660 274 AYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQA 353 (594)
Q Consensus 274 ~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~ 353 (594)
.....++|..+||.+++++.+.+|||+.|++.+++.++..+.....+||++++++
T Consensus 149 ----------~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~--------------- 203 (394)
T PRK10213 149 ----------IFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPS--------------- 203 (394)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcccc---------------
Confidence 9999999999999999999999999999999887777655544444666432110
Q ss_pred CchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Q psy16660 354 DPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCL-FVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAK 432 (594)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~ 432 (594)
+..++.++.+++|.++...+..++.+........+. |.|. +.+|+++.+.+..+...+++.+++.++.+++.||.+++
T Consensus 204 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~ 282 (394)
T PRK10213 204 HQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYM-NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL 282 (394)
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 011233456788988887666666666555566666 4554 55799999999999999999999999999999996544
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHH
Q psy16660 433 HTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFG 511 (594)
Q Consensus 433 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g 511 (594)
..+....+.....+++....++.+......++.|++ +...+...+.+++..| ++++++.+......++|..+|+.++|
T Consensus 283 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G 361 (394)
T PRK10213 283 ALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGG 361 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443443444455555556677777778888888 7788888888888886 56778888888899999999999999
Q ss_pred HHHHHhhcc
Q psy16660 512 LIFYMFHVD 520 (594)
Q Consensus 512 ~l~~~~g~~ 520 (594)
.++|..|..
T Consensus 362 ~l~~~~g~~ 370 (394)
T PRK10213 362 YALDNIGLT 370 (394)
T ss_pred HHHhccChh
Confidence 999987654
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-31 Score=279.83 Aligned_cols=367 Identities=17% Similarity=0.257 Sum_probs=277.9
Q ss_pred cCCchhHHHHHHHHHHHHhhhhhhhHHHHHH-hhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHH
Q psy16660 95 GEPSVYHALVVIFLEFFAWGLLTMPIISVLN-RTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 173 (594)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~ 173 (594)
.++.+..+.+..++..++.++ ..|.+|.+. ++++.+..+. |++.+++.++..+++++.|+++||+|||++++.+.++
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~-~~~~l~~~i~~~~g~s~~~~-g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~ 90 (399)
T PRK05122 13 LTLRIVSIVMFTFISYLTIGL-PLAVLPGYVHDQLGFSAFLA-GLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCG 90 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCccHHHH-HHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHH
Confidence 356667778888888888888 899999864 5677666655 9999999999999999999999999999999998877
Q ss_pred hhhhhhh--hc--------chHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHH
Q psy16660 174 TCLPIPL--MT--------LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFF 242 (594)
Q Consensus 174 ~~i~~~~--~~--------~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 242 (594)
.+++... ++ .+++++++.|+++|++ +...+...+++.|++|+++|++++++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~------------------ 152 (399)
T PRK05122 91 CALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISW------------------ 152 (399)
T ss_pred HHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhh------------------
Confidence 6655333 11 1567889999999998 55667778889999999999999998
Q ss_pred HHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Q psy16660 243 AMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILD 322 (594)
Q Consensus 243 ~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~ 322 (594)
.+....+|.++|+.+++++.+.+||+..+++..+..++.
T Consensus 153 -----------------------------------------~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~ 191 (399)
T PRK05122 153 -----------------------------------------NGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLG 191 (399)
T ss_pred -----------------------------------------hhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999988877665543
Q ss_pred HHHhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChh
Q psy16660 323 VFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEV 402 (594)
Q Consensus 323 ~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 402 (594)
.+.. ...|+.++. + + ++ .++++.++ ..+.......+..+.+.....+.+.|..+ .|+ .
T Consensus 192 ~~~~-~~~~~~~~~---~-~--------~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~ 249 (399)
T PRK05122 192 LLLA-RPRPAVPPV---K-G--------ER----LPFRRVLG--RVWPYGMGLALASIGFGTIATFITLYYAA-RGW--D 249 (399)
T ss_pred HHHH-hcCCCCCCC---C-c--------cc----hhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc--c
Confidence 3322 222322111 0 0 00 11222222 12222222233334445556677777765 365 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhh
Q psy16660 403 HVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSM 481 (594)
Q Consensus 403 ~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~ 481 (594)
+.+.......++.+++.++.+++.||+++|+.+..+..+.+++.+++...++.+..++..++.|++ +..++.......+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 456667778888889999999999999999999888888888887777777777777777888888 7777887788888
Q ss_pred cCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHH
Q psy16660 482 HSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAA 561 (594)
Q Consensus 482 ~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 561 (594)
..|+++||+++|+++...++|..+++.+.|.+.+..|++ ..|.+.+++.+++
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~----------------------------~~~~~~~~~~~~~ 381 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYP----------------------------SIFLAAALAALLG 381 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH----------------------------HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987755 6777777777777
Q ss_pred HHHHHhccCcc
Q psy16660 562 LLVATFIPESI 572 (594)
Q Consensus 562 ~~~~~~~~~~~ 572 (594)
++.....++++
T Consensus 382 ~~~~~~~~~~~ 392 (399)
T PRK05122 382 LALTWLLYRRA 392 (399)
T ss_pred HHHHHHhcccc
Confidence 76666655543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-31 Score=281.58 Aligned_cols=372 Identities=20% Similarity=0.272 Sum_probs=288.4
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhH----HHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHH
Q psy16660 98 SVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFL----MNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 173 (594)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~ 173 (594)
....+++..++..++.+. ..|.+|.+.++++.+..+ ..|++.+++.++..++.++.|+++||+|||+++..+.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 93 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSL-VMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALG 93 (408)
T ss_pred HHHHHHHHHHHHHHHHHH-hhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHH
Confidence 445556667777777777 899999999998766432 348999999999999999999999999999999988887
Q ss_pred hhhhhhh--hcchHHHHHHHHHHHHHHhHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhcccc
Q psy16660 174 TCLPIPL--MTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVF 251 (594)
Q Consensus 174 ~~i~~~~--~~~~~~~l~~~r~l~Gi~~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 251 (594)
.+++.++ ...+++.+++.|++.|++++..+...+++.+.+|+++|++++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 146 (408)
T PRK09874 94 MGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGT--------------------------- 146 (408)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHH---------------------------
Confidence 7777665 45689999999999999866667778888999999999999988
Q ss_pred chhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheecc
Q psy16660 252 AVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVP 331 (594)
Q Consensus 252 ~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~ 331 (594)
......+|..++|.+++.+.+..+|++.|++.+++.++..+..++.+|
T Consensus 147 --------------------------------~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (408)
T PRK09874 147 --------------------------------LSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIR 194 (408)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888899999999999999999899999999998887777666666677
Q ss_pred CCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHhCCChh---HHHHH
Q psy16660 332 ESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILML-CVTVFLSYLPEAGQYSCLFVYLKLVMGFDEV---HVAVF 407 (594)
Q Consensus 332 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~---~~g~~ 407 (594)
|++++.+++. ....++..+.+++++++.. ....+...........+++.|..+..+.... ..+.+
T Consensus 195 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 263 (408)
T PRK09874 195 ENFQPVSKKE-----------MLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMI 263 (408)
T ss_pred cCcccccchh-----------hhHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 6543221110 0111223344566766543 3333334444445566777887775432221 24556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCc
Q psy16660 408 IAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDAD 486 (594)
Q Consensus 408 ~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~ 486 (594)
....+++.+++.+..|++.||+++|+.+..+..+..++.+.+...++.+..++..++.|++ +...+...+.+.+..|++
T Consensus 264 ~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 343 (408)
T PRK09874 264 ASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQ 343 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcc
Confidence 6677788889999999999999999999988888877777766667777777777788888 778888888889999999
Q ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHH
Q psy16660 487 RQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVAT 566 (594)
Q Consensus 487 ~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 566 (594)
++|+.++..+...++|..+||.+.|.+.+..|+. ..|.+.+++.+++.+..+
T Consensus 344 ~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~----------------------------~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 344 IAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFR----------------------------AVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred cceeeehHHHHHHHHHHHhhHHHHHHHHhhcchh----------------------------HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887654 788888777777766655
Q ss_pred hc
Q psy16660 567 FI 568 (594)
Q Consensus 567 ~~ 568 (594)
+.
T Consensus 396 ~~ 397 (408)
T PRK09874 396 NS 397 (408)
T ss_pred HH
Confidence 43
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=279.93 Aligned_cols=342 Identities=15% Similarity=0.123 Sum_probs=265.7
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHH
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISI 194 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l 194 (594)
..+..|.+.++++.++.+. |++.+++.++..++.++.|+++||+|||+++.++.++.+++..+ ++.+++.+++.|++
T Consensus 13 ~~~~~~~~~~~~g~s~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 91 (399)
T TIGR00893 13 LSFAAPMLQEDLGLSAAQY-GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVL 91 (399)
T ss_pred hhHhHHHHHHhhCCChhhH-HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 5667778888888877766 99999999999999999999999999999999988887777665 55699999999999
Q ss_pred HHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhh
Q psy16660 195 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSL 273 (594)
Q Consensus 195 ~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~ 273 (594)
.|++ +...+...+++.|++|+++|++++++
T Consensus 92 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~------------------------------------------------- 122 (399)
T TIGR00893 92 LGAAEAPFFPGIILIVASWFPASERATAVSI------------------------------------------------- 122 (399)
T ss_pred HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHH-------------------------------------------------
Confidence 9998 66778889999999999999999999
Q ss_pred hhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCC------CCC--
Q psy16660 274 AYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQAS------WGG-- 345 (594)
Q Consensus 274 ~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~------~~~-- 345 (594)
.+....+|.++||.+++++.+..+||+.|++.+++.++..++.++..||++++++...+ .+.
T Consensus 123 ----------~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (399)
T TIGR00893 123 ----------FNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLL 192 (399)
T ss_pred ----------HHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhc
Confidence 99999999999999999999989999999999888777666666667765432111000 000
Q ss_pred --CCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHH
Q psy16660 346 --APISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILG 423 (594)
Q Consensus 346 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g 423 (594)
.+.+.+.+......++.+++|.++..++..++..........+.|.|+++.+|.++.+.+.+.....++.+++.++.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 272 (399)
T TIGR00893 193 AEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGG 272 (399)
T ss_pred cccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHH
Confidence 000011112233456777899999998888888888888888999999998899999999999999999999999999
Q ss_pred HHHHhhchHH--HHHHHH------HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHhHHHHHHhhcCCCccchHHHHHH
Q psy16660 424 CLMNVLGAKH--TIIIGL------VFEMLQLMWYGFGSQMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMV 495 (594)
Q Consensus 424 ~l~dr~g~~~--~l~~~~------~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 495 (594)
++.||+++|+ ...... ++..+........++.+.......+.+++....+...++.+|..|+++||+++|+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 352 (399)
T TIGR00893 273 RLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLI 352 (399)
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHH
Confidence 9999999885 111111 11111111111122333333333333334337888999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhh
Q psy16660 496 TGMRGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 496 ~~~~~lg~~lg~~~~g~l~~~~g 518 (594)
+...++|..++|.+.|.+.+..|
T Consensus 353 ~~~~~~g~~~~~~i~g~l~~~~g 375 (399)
T TIGR00893 353 NSLGNLGGIVGPIVIGAIAATTG 375 (399)
T ss_pred HHHHHHhhhhhhHHhhhhccCCC
Confidence 99999999999999999998766
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=277.80 Aligned_cols=334 Identities=11% Similarity=0.114 Sum_probs=264.2
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHH
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISI 194 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l 194 (594)
..+..|.+.++++.+..+. |++.+++.++..+++++.|+++||+|||+++..+.++.+++..+ ++.+++.+++.|++
T Consensus 22 ~~~~~~~~~~~~~~s~~~~-g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (377)
T TIGR00890 22 WTLLAPPLGRYFGVGVTAV-AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGL 100 (377)
T ss_pred hhhHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999998887766 99999999999999999999999999999999998888887766 56699999999999
Q ss_pred HHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhh
Q psy16660 195 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSL 273 (594)
Q Consensus 195 ~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~ 273 (594)
.|++ +...+.....+.+++| ++|+++.++
T Consensus 101 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------------------------------------------- 130 (377)
T TIGR00890 101 ASAGVGIAYGIALNTAVKWFP-DKRGLASGI------------------------------------------------- 130 (377)
T ss_pred HhHHHHHHHHhHHHHHHHHcC-cccHHHHHH-------------------------------------------------
Confidence 9998 5566677777888886 678998888
Q ss_pred hhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCCccccC
Q psy16660 274 AYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQA 353 (594)
Q Consensus 274 ~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~ 353 (594)
.....++|..+++.+.+.+.+..+||+.|++.+++.++..+..++.++++++++.++++ +..
T Consensus 131 ----------~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 192 (377)
T TIGR00890 131 ----------IIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNI--------EVS 192 (377)
T ss_pred ----------HHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCc--------ccc
Confidence 88888888887766777777778999999999988877766666656654432221111 001
Q ss_pred CchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q psy16660 354 DPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKH 433 (594)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~ 433 (594)
+...+.++.++++.++.+.+..++..........+.+.|.++ +|.+..+.+.+.....++.+++.++.|++.||+++|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 271 (377)
T TIGR00890 193 VKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK 271 (377)
T ss_pred hhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 111244566788888877776666655555555666777655 6888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHH
Q psy16660 434 TIIIGLVFEMLQLMWYGFGSQM--WMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMF 510 (594)
Q Consensus 434 ~l~~~~~~~~i~~~~~~~~~~~--~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~ 510 (594)
.+..+..+..++.+++...++. +..+...++.+++ +...+...++..|.+|+++||++.|+.+...++|..++|.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 351 (377)
T TIGR00890 272 TMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIA 351 (377)
T ss_pred hhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence 9998888888887776655432 2333444555665 556667778889999999999999999999999999999999
Q ss_pred HHHHHHhhcc
Q psy16660 511 GLIFYMFHVD 520 (594)
Q Consensus 511 g~l~~~~g~~ 520 (594)
|.+.+..|+.
T Consensus 352 g~l~~~~g~~ 361 (377)
T TIGR00890 352 SHALTEIGFE 361 (377)
T ss_pred HHHHhhhchh
Confidence 9999887755
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=273.13 Aligned_cols=363 Identities=13% Similarity=0.203 Sum_probs=277.8
Q ss_pred HHHHHHHHHhhhhhhhHHHHHH-hhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHH-HHHHhhhhhhh-
Q psy16660 104 VVIFLEFFAWGLLTMPIISVLN-RTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLI-TVFVTCLPIPL- 180 (594)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~-~~~~~~i~~~~- 180 (594)
+..++..++.+. ..|.+|.+. ++++.+..+. |++.+++.+...+.+++.|+++||+||||.++. +.++..++..+
T Consensus 4 ~~~~~~~~~~~~-~~~~l~~~l~~~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 4 LVAFLTGIAGAL-QFPTLSLFLSEEVRARPAMI-GLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred HHHHHHHHHHHH-HhhHHHHHHHcccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence 456777777787 899999875 5677766555 999999999999999999999999999887554 44544444333
Q ss_pred -hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccch--hchhHHHHHHHHhhhhhhhHHHHhhhccccchhhh
Q psy16660 181 -MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLA--YGLKFIALKIILMTLDTWWFFAMISISGVFAVTFS 256 (594)
Q Consensus 181 -~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 256 (594)
++.+++.+++.|++.|.+ +...+...++..|+.|+++|++. .+.
T Consensus 82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 129 (375)
T TIGR00899 82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSV-------------------------------- 129 (375)
T ss_pred HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHH--------------------------------
Confidence 567899999999888876 55677778888888877766643 455
Q ss_pred hhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCch
Q psy16660 257 VVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPE 336 (594)
Q Consensus 257 ~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~ 336 (594)
.....++|.++||.+++++.+.+|||++|++.++..++..++.++.+||.+++
T Consensus 130 ---------------------------~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
T TIGR00899 130 ---------------------------MRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRG 182 (375)
T ss_pred ---------------------------HHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 77778899999999999999989999999999988777766666668876533
Q ss_pred hhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Q psy16660 337 KVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSV 416 (594)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~ 416 (594)
++++. ...+.+..++++.++......++.+........+.|.|+++.+|.++.+.+.+........+
T Consensus 183 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~ 249 (375)
T TIGR00899 183 APGAL-------------TRLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEI 249 (375)
T ss_pred ccccc-------------CcchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 22110 01123335567777766655555555455556677888888889999999998887777778
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHH
Q psy16660 417 SAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMV 495 (594)
Q Consensus 417 ~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~ 495 (594)
++.++.|++.||+++|+.+..+.++..+.+..+...++.+..+...++.+++ +...+....+..|..|+ ++++++++.
T Consensus 250 ~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~ 328 (375)
T TIGR00899 250 PFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLY 328 (375)
T ss_pred HHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHH
Confidence 8899999999999999988888776666665555666677666666777777 66777788888888865 567999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhcc
Q psy16660 496 TGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIP 569 (594)
Q Consensus 496 ~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 569 (594)
+...++|..++|.+.|.+.+..|++ ..|.+.+++.+++.+...+++
T Consensus 329 ~~~~~~g~~~g~~~~g~~~~~~g~~----------------------------~~~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 329 TNTGRVGWIIAGSVGGILAERWSYH----------------------------AVYWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccch----------------------------hHHHHHHHHHHHHHHHHheec
Confidence 9999999999999999999987755 678777777777776665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=275.90 Aligned_cols=323 Identities=13% Similarity=0.103 Sum_probs=255.4
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHH
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISI 194 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l 194 (594)
..|.+|.+.++++.+..+. |++.+++.+++.+++++.|+++||+|||+++..+..+.+++... ++++++.+++.|++
T Consensus 28 ~~~~lp~i~~~~~~s~~~~-g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l 106 (393)
T PRK09705 28 VGPLLPQLRQASGMSFSVA-ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALL 106 (393)
T ss_pred cchhHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHH
Confidence 6889999999999887776 99999999999999999999999999999999999999988777 67799999999999
Q ss_pred HHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhh
Q psy16660 195 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSL 273 (594)
Q Consensus 195 ~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~ 273 (594)
+|++ +...+...+++.+++| ++|++++++
T Consensus 107 ~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~------------------------------------------------- 136 (393)
T PRK09705 107 GGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGL------------------------------------------------- 136 (393)
T ss_pred HHhHHHHHhhhhhHHHHHHcc-ccchhHHHH-------------------------------------------------
Confidence 9998 5566677888899887 789999998
Q ss_pred hhcccccccchhHHHhhHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCCcccc
Q psy16660 274 AYGLSFSFSQVSATFAASMVFSPALGAYLEKTY-SLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQ 352 (594)
Q Consensus 274 ~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~-gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~ 352 (594)
+..+...|..+|+.+++++.++. +||+.+.+.++..++..+. ++...+.+++++++ ++
T Consensus 137 ----------~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----------~~ 195 (393)
T PRK09705 137 ----------WSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFA-WWWQSAREVASSHK----------TT 195 (393)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-HHHHhcCCCccccC----------CC
Confidence 88888999999999999988875 8999887766554443332 22222211111100 00
Q ss_pred CCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Q psy16660 353 ADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAK 432 (594)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~ 432 (594)
. ..++.+++++.+.+.+..++....+.....+.|.|+++ +|.+..+.|...+..+++.++++++.+++.||+++|
T Consensus 196 ~----~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~ 270 (393)
T PRK09705 196 T----TPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRR 270 (393)
T ss_pred c----CCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 0 11234467777777777777777777888899999987 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHh-hchHhHHHHHHhhcCC-CccchHHHHHHHHHHHHHHhHHHHH
Q psy16660 433 HTIIIGLVFEMLQLMWYGFGS-QMWMMWAAGILASLA-SITYPAISALVSMHSD-ADRQGLVQGMVTGMRGLCNGLGPAM 509 (594)
Q Consensus 433 ~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~lg~~lg~~~ 509 (594)
+.+..+..+..++..++...+ +.... ..++.|++ +...+.......+..+ ++++|+++|+.+...+++..++|.+
T Consensus 271 ~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~ 348 (393)
T PRK09705 271 KLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWF 348 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888877777766554322 22222 23345666 5666766666666664 5789999999999999999999999
Q ss_pred HHHHHHHhh
Q psy16660 510 FGLIFYMFH 518 (594)
Q Consensus 510 ~g~l~~~~g 518 (594)
.|++.|..|
T Consensus 349 ~G~l~~~~g 357 (393)
T PRK09705 349 SGVLRSISG 357 (393)
T ss_pred HHHHHHHhC
Confidence 999999876
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=284.08 Aligned_cols=358 Identities=14% Similarity=0.148 Sum_probs=249.3
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCch-h--HHHHH--HHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHh
Q psy16660 100 YHALVVIFLEFFAWGLLTMPIISVLNRTFPDHT-F--LMNGL--IMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 174 (594)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~g~--~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~ 174 (594)
....+..+++.+.++. +....|.+.+++..+. . +..+. +.++..++..++++++|+++||+|||+++.++.+++
T Consensus 19 ~~~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~ 97 (490)
T PRK10642 19 TAASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIM 97 (490)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3444566777777676 6677777777775322 1 11122 257888999999999999999999999999999998
Q ss_pred hhhhhh--hcchHHH--------HHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHH
Q psy16660 175 CLPIPL--MTLDTWW--------FFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFA 243 (594)
Q Consensus 175 ~i~~~~--~~~~~~~--------l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 243 (594)
+++.++ ++++++. +++.|+++|++ ++.++...+++.|++|+++|+++.++
T Consensus 98 ~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~------------------- 158 (490)
T PRK10642 98 SISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSW------------------- 158 (490)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHH-------------------
Confidence 888776 5557653 78899999998 77888999999999999999999888
Q ss_pred HhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHH--------HhcChHHHHHHH
Q psy16660 244 MISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLE--------KTYSLSLVVAVA 315 (594)
Q Consensus 244 ~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~--------~~~gw~~~f~~~ 315 (594)
...+..+|..+|+.+...+. ..+|||++|++.
T Consensus 159 ----------------------------------------~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~ 198 (490)
T PRK10642 159 ----------------------------------------LDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIA 198 (490)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHH
Confidence 77777777777776654443 257999999998
Q ss_pred HHHHHHHHHHhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhcc-chhH-HHHHHHHHHHHHhhhhHHHHHHHHH
Q psy16660 316 TAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGK-DQTI-LMLCVTVFLSYLPEAGQYSCLFVYL 393 (594)
Q Consensus 316 ~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (594)
+++.++.. +....+||+++...++++.++...+...+++..+++++++ +++. .......++.....+....++|.|+
T Consensus 199 ~~~~l~~~-~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l 277 (490)
T PRK10642 199 LPLGIIGL-YLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYL 277 (490)
T ss_pred HHHHHHHH-HHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666533 3345688886533221110000000000011123333333 2222 2222233344456667778999999
Q ss_pred HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH-Hh--hhhhHHHHHHHHHHHHHh-h
Q psy16660 394 KLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMW-YG--FGSQMWMMWAAGILASLA-S 469 (594)
Q Consensus 394 ~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~-~~--~~~~~~~~~~~~~l~g~~-~ 469 (594)
++.+|++..+.++......++.+++.++.|++.||+|||+.+..+.++..++.+. +. ..++...++++.++.+++ +
T Consensus 278 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 357 (490)
T PRK10642 278 SHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILN 357 (490)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 8888999888888888888889999999999999999999888776543332221 21 223344555555666665 5
Q ss_pred chHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy16660 470 ITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 470 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g 518 (594)
........+..+.+|++.||++.|.......+++.++|.+.+++.+..+
T Consensus 358 ~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~ 406 (490)
T PRK10642 358 CFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQ 406 (490)
T ss_pred HHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5556667777889999999999998666677778899999999987654
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-30 Score=271.96 Aligned_cols=346 Identities=14% Similarity=0.162 Sum_probs=277.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhh----HHHHHHHh
Q psy16660 99 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLF----LLITVFVT 174 (594)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~----l~~~~~~~ 174 (594)
.+.+....+....+++. ..|++|.+.++++.+..+. |++.+++.+...++++++|+++||+|||+. +.++..+.
T Consensus 6 ~~~l~~~~~~~~~~~~~-~~p~l~~~l~~~g~s~~~i-g~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~ 83 (382)
T TIGR00902 6 FRWLALGFFGYFCAYGI-FLPFFPAWLKGIGLGEEMI-GLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIF 83 (382)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 34456667777777788 8999999999998876666 999999999999999999999999998543 22333233
Q ss_pred hhhhhhhcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccch
Q psy16660 175 CLPIPLMTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAV 253 (594)
Q Consensus 175 ~i~~~~~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 253 (594)
.+.....+.+++.+++.|.++|.+ +...+...++..++ +++|++++|.
T Consensus 84 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~----------------------------- 132 (382)
T TIGR00902 84 AAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGK----------------------------- 132 (382)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccH-----------------------------
Confidence 332223567899999999999987 55677777776553 4677888888
Q ss_pred hhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCC
Q psy16660 254 TFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPES 333 (594)
Q Consensus 254 ~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~ 333 (594)
.....++|.++||.+++++.+++|||..|++..+..++. ++... ++|+
T Consensus 133 ------------------------------~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~-~~~~~-~~~~ 180 (382)
T TIGR00902 133 ------------------------------VRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFM-LIGFL-IKPT 180 (382)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH-HHHHH-cCCC
Confidence 999999999999999999999999999998876553332 22222 3333
Q ss_pred CchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q psy16660 334 LPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGT 413 (594)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i 413 (594)
+++++++++ ++.+..+++++.+|+|+++.+.+..++.........++.+.|+++ +|.++.+.|..+....+
T Consensus 181 ~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~ 251 (382)
T TIGR00902 181 IPPKDAIPE--------DESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVL 251 (382)
T ss_pred CCCCccccc--------cccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHH
Confidence 211111100 011123456678899999999998888888888899999999987 79999999999999999
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHH
Q psy16660 414 LSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQ 492 (594)
Q Consensus 414 ~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~ 492 (594)
+.+++..+.+++.||+|+|+.+..+.+...+...++.+.++.+.++...++.|+. +...+....++.+. |++++++++
T Consensus 252 ~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q 330 (382)
T TIGR00902 252 AEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQ 330 (382)
T ss_pred HHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHH
Confidence 9999999999999999999999999999999999999899999999999999998 88899999999988 999999999
Q ss_pred HHHHH-HHHHHHhHHHHHHHHHHHHhhc
Q psy16660 493 GMVTG-MRGLCNGLGPAMFGLIFYMFHV 519 (594)
Q Consensus 493 g~~~~-~~~lg~~lg~~~~g~l~~~~g~ 519 (594)
++++. ...+|..++|.++|.++|..|.
T Consensus 331 ~~~~~~~~g~g~~~g~~~~G~l~~~~g~ 358 (382)
T TIGR00902 331 ALYNALAMGGLIAIFTAFAGFIYPTLGA 358 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 99874 5679999999999999998763
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=274.51 Aligned_cols=342 Identities=13% Similarity=0.116 Sum_probs=261.0
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhh
Q psy16660 98 SVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLP 177 (594)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~ 177 (594)
.++.+.+..+...++... ..|.+|.+.++++.+..+. |++.+.+.++..+++++.|+++||+|||+++..+.++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~s~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 81 (382)
T PRK10091 4 VILSLALGTFGLGMAEFG-IMGVLTELAHDVGISIPAA-GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIG 81 (382)
T ss_pred hHHHHHHHHHHHHhhHHH-HHhChHHHHHHcCCCHHHH-hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence 345556666666666555 7899999999998887766 99999999999999999999999999999999998888887
Q ss_pred hhh--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchh
Q psy16660 178 IPL--MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVT 254 (594)
Q Consensus 178 ~~~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 254 (594)
.++ ++.+++++++.|+++|++ +...+...+++.|++|+++|++++++
T Consensus 82 ~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 131 (382)
T PRK10091 82 NAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAG------------------------------ 131 (382)
T ss_pred HHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHH------------------------------
Confidence 766 667999999999999998 55667778889999999899999888
Q ss_pred hhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCC
Q psy16660 255 FSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESL 334 (594)
Q Consensus 255 ~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~ 334 (594)
...+..+|..+||.+++++.+..+||++|++.+++.++..+..++.+||.+
T Consensus 132 -----------------------------~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 132 -----------------------------MVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred -----------------------------HHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 888899999999999999998899999999999887776665556677753
Q ss_pred chhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy16660 335 PEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTL 414 (594)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~ 414 (594)
++++. +..+.+ +.++++..+......++.........++.+.|+.+.+|+++.+.+++....+++
T Consensus 183 ~~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 247 (382)
T PRK10091 183 DEAKG--------------GLREQF-HFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLG 247 (382)
T ss_pred ccccc--------------CHHHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 21100 111222 234677766665555444444444455667788777899999999999999999
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHh-hchHh-HHHHHHhhcCCCccchHH
Q psy16660 415 SVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGF-GSQMWMMWAAGILASLA-SITYP-AISALVSMHSDADRQGLV 491 (594)
Q Consensus 415 ~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~-~~~~~~~~~~~~l~g~~-~~~~~-~~~~~~~~~~p~~~~g~~ 491 (594)
.+++.++.+++.||+++++.+..+..+..++.+++.. .++.+...+..++.+.+ ....+ .......+..+++.++.+
T Consensus 248 ~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (382)
T PRK10091 248 MVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA 327 (382)
T ss_pred HHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH
Confidence 9999999999999999999998888887777765543 34444444444455554 33333 333444444455555554
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy16660 492 QGMVTGMRGLCNGLGPAMFGLIFYMF 517 (594)
Q Consensus 492 ~g~~~~~~~lg~~lg~~~~g~l~~~~ 517 (594)
..+...++|..+||.+.|.+.|..
T Consensus 328 --~~~~~~~~g~~~Gp~~~G~l~~~~ 351 (382)
T PRK10091 328 --GGQIAFNLGSAIGAYCGGMMLTLG 351 (382)
T ss_pred --HHHHHHHHHHHHHHHHhHHHHHcc
Confidence 346778999999999999999863
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-30 Score=276.36 Aligned_cols=336 Identities=15% Similarity=0.087 Sum_probs=268.6
Q ss_pred HhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHH
Q psy16660 112 AWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFF 189 (594)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~ 189 (594)
+.+. ..|.+|.+.++++.+..+. ++..+.+.++..++.++.|+++||+|||++++++.++.+++... ++.+++.++
T Consensus 28 ~~~~-~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~ 105 (406)
T PRK15402 28 ANDM-IQPGMLAVVEDFNAGAEWV-PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFT 105 (406)
T ss_pred hhhh-HhcchHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 4444 7888999999998877666 99999999999999999999999999999999988777777655 566899999
Q ss_pred HHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhh
Q psy16660 190 AMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEE 268 (594)
Q Consensus 190 ~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~ 268 (594)
+.|+++|++ +...+...+.+.|.+|+++|.++.++
T Consensus 106 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-------------------------------------------- 141 (406)
T PRK15402 106 LLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITAL-------------------------------------------- 141 (406)
T ss_pred HHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHH--------------------------------------------
Confidence 999999998 55567778889999999888888887
Q ss_pred hhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCC
Q psy16660 269 HERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPI 348 (594)
Q Consensus 269 ~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~ 348 (594)
......++..+||.+++++.++.+||+.|++.++..++..+..++..||++++++++.
T Consensus 142 ---------------~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 199 (406)
T PRK15402 142 ---------------MANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKL------- 199 (406)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccc-------
Confidence 7777788999999999999998899999999888887776665556777643221110
Q ss_pred ccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16660 349 SWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNV 428 (594)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr 428 (594)
+..+..++++..+++|.++...+..++............|.|+++.+|+++.+.+.......++.+++.++.+++.||
T Consensus 200 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r 277 (406)
T PRK15402 200 --SLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR 277 (406)
T ss_pred --cHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111234566778899998888777766666555666677888888889999999988888888888999999999999
Q ss_pred hchHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHH
Q psy16660 429 LGAKHTIIIGLVFEMLQLMWYGFG-----SQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLC 502 (594)
Q Consensus 429 ~g~~~~l~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg 502 (594)
+++|+.+..+.++..++.+++... .+.+......++.+++ +...+..+...... +++++|++.+.++....++
T Consensus 278 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~ 356 (406)
T PRK15402 278 RPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLI 356 (406)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHH
Confidence 999999998888777777666542 2345556677778888 66666666555443 4589999999999999999
Q ss_pred HhHHHHHHHHHHHHhh
Q psy16660 503 NGLGPAMFGLIFYMFH 518 (594)
Q Consensus 503 ~~lg~~~~g~l~~~~g 518 (594)
..+|+.+.+.+++..+
T Consensus 357 ~~~g~~~~~~l~~~~~ 372 (406)
T PRK15402 357 FTVGIELSKHAYLGGG 372 (406)
T ss_pred HHHHHHHHHhcccCCc
Confidence 9999999999987654
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=279.87 Aligned_cols=358 Identities=15% Similarity=0.132 Sum_probs=262.2
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhh
Q psy16660 100 YHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIP 179 (594)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~ 179 (594)
...++..+.+.+.... ..+..|.+.++++.++.+. +++.+++.++..+++++.|+++||+|||+++.++.++.+++..
T Consensus 21 ~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~~~-~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~ 98 (426)
T PRK12307 21 FSAWLGYVFDGFDFML-IFYIMYLIKADLGLTDMEG-AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTG 98 (426)
T ss_pred HHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 3444444555555554 6888899999998887766 9999999999999999999999999999999999988888776
Q ss_pred h--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhh
Q psy16660 180 L--MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFS 256 (594)
Q Consensus 180 ~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 256 (594)
+ ++.+++.++++|+++|++ ++..+....++.|++|+++|+++.++
T Consensus 99 ~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~-------------------------------- 146 (426)
T PRK12307 99 LSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAF-------------------------------- 146 (426)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhH--------------------------------
Confidence 6 566899999999999998 66788889999999999999999999
Q ss_pred hhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCch
Q psy16660 257 VVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPE 336 (594)
Q Consensus 257 ~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~ 336 (594)
...+.++|.++++.+.+.+.+..+||++|++..+..++. +......||+++.
T Consensus 147 ---------------------------~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~-~~~~~~~p~~~~~ 198 (426)
T PRK12307 147 ---------------------------LVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLV-IYIRARAPESKEW 198 (426)
T ss_pred ---------------------------HHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH-HHHHHHCCCChHH
Confidence 899999999999999999888899999999865443332 2222234555432
Q ss_pred hhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q psy16660 337 KVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFL---SYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGT 413 (594)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i 413 (594)
++++.+.+.+..+...+....++++.++++.++........ .+........++|.|+++ .|.++.+.+...+...+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~ 277 (426)
T PRK12307 199 EEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAF 277 (426)
T ss_pred HHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 22111111000000111112345667777776654433222 222233456678888877 59999999999999999
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---hchHhHHHHHHhhcCCCccchH
Q psy16660 414 LSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA---SITYPAISALVSMHSDADRQGL 490 (594)
Q Consensus 414 ~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~---~~~~~~~~~~~~~~~p~~~~g~ 490 (594)
+.+++.++.+++.||+++|+.+..+.++..+..+.+...++........++++.+ ....+....++.|.+|++++|+
T Consensus 278 ~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~ 357 (426)
T PRK12307 278 GTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGL 357 (426)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhh
Confidence 9999999999999999999998888877666655444322211122222333332 2334556678899999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 491 VQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 491 ~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
++|+.+...++++.++|.+.|.+.+..|+.
T Consensus 358 ~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~ 387 (426)
T PRK12307 358 GTGLIYNLAATSGTFNSMAATWLGITMGLG 387 (426)
T ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHcccHH
Confidence 999999999999999999999999887643
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-30 Score=272.97 Aligned_cols=362 Identities=15% Similarity=0.255 Sum_probs=271.4
Q ss_pred CCchhHHHHHHHHHHHHhhhhhhhHHHHH-HhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHh
Q psy16660 96 EPSVYHALVVIFLEFFAWGLLTMPIISVL-NRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 174 (594)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~ 174 (594)
++.++.+.+..++..++.++ ..|.+|.+ .++++.+..+. |++.+++.+++.++++++|+++||+||||++..+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-~~p~l~~~l~~~lg~s~~~~-g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~ 91 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGL-PLPVIPLFVHHDLGFGNTMV-GIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLAC 91 (392)
T ss_pred cccHHHHHHHHHHHHHHHHH-HhhhhhHHHHHhcCCcHHHH-HHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHH
Confidence 45566666777788887777 89999976 46777776665 99999999999999999999999999999998887665
Q ss_pred hhhhhh----------hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHH
Q psy16660 175 CLPIPL----------MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFA 243 (594)
Q Consensus 175 ~i~~~~----------~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 243 (594)
.++.+. ...+++.+++.|+++|++ +...+...+++.|++|+++|++++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~------------------- 152 (392)
T PRK12382 92 GLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSW------------------- 152 (392)
T ss_pred HHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhH-------------------
Confidence 543221 124788999999999998 55667778899999999999999999
Q ss_pred HhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Q psy16660 244 MISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDV 323 (594)
Q Consensus 244 ~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~ 323 (594)
.+.+...|..+||.+++++.+.+||++.+.+..+..++..
T Consensus 153 ----------------------------------------~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 192 (392)
T PRK12382 153 ----------------------------------------NGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAW 192 (392)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 8888999999999999999998999988776655444332
Q ss_pred HHhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhH
Q psy16660 324 FFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVH 403 (594)
Q Consensus 324 ~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 403 (594)
.. ....||.++++ + ++.+..+..+.. +...+..++..........+.+.|+++ .+++ +
T Consensus 193 ~~-~~~~~~~~~~~--~----------~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~--~ 250 (392)
T PRK12382 193 AF-NGTVRKVPAHA--G----------ERPSLWSVVGLI------WKPGLGLALQGVGFAVIGTFVSLYFAS-KGWA--M 250 (392)
T ss_pred HH-HHhccCCCCCc--c----------cCchHHHHHHHH------HHhHHHHHHHHHHHhHHHHHHHHHHHh-cCCc--h
Confidence 22 12233321110 0 001111111111 111112222233344555677778766 3654 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhc
Q psy16660 404 VAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMH 482 (594)
Q Consensus 404 ~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~ 482 (594)
.+......+++.+++.++.|++.||+++|+.+..+..+..++.+++...++.+..++..++.+++ +...+...+...+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 56666777788889999999999999999999988888888887777777777777777788888 77778888888999
Q ss_pred CCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHH
Q psy16660 483 SDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAAL 562 (594)
Q Consensus 483 ~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 562 (594)
.|+++||++.|+.+....+|..++|.+.|.+.|..|++ ..|.+.+++.+++.
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~----------------------------~~~~~~~~~~~~~~ 382 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYP----------------------------SVFLAGAISAVLGI 382 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch----------------------------HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988765 67777777777766
Q ss_pred HHHHhc
Q psy16660 563 LVATFI 568 (594)
Q Consensus 563 ~~~~~~ 568 (594)
+..+..
T Consensus 383 ~~~~~~ 388 (392)
T PRK12382 383 IVTILS 388 (392)
T ss_pred HHHHhh
Confidence 665543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-30 Score=274.91 Aligned_cols=359 Identities=16% Similarity=0.186 Sum_probs=265.9
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhh
Q psy16660 98 SVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLP 177 (594)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~ 177 (594)
.+....+..+.+.+.... ..+..|.+.++++.++.+. |++.+++.++..++.++.|+++||+|||+++.++.++.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~s~~~~-g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 90 (405)
T TIGR00891 13 AFSAAWLGWLLDAFDFFL-VALVLAEVAGEFGLTTVDA-ASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAG 90 (405)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 334455555666666555 7888899999998887766 99999999999999999999999999999999988887777
Q ss_pred hhh--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchh
Q psy16660 178 IPL--MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVT 254 (594)
Q Consensus 178 ~~~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 254 (594)
.++ ++.+++.+++.|++.|++ +...+...+++.|++|+++|++++++
T Consensus 91 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------------------------------ 140 (405)
T TIGR00891 91 TLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGL------------------------------ 140 (405)
T ss_pred HHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHH------------------------------
Confidence 665 566999999999999998 66778889999999999999999999
Q ss_pred hhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHhheeccC
Q psy16660 255 FSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYS--LSLVVAVATAVAILDVFFILVAVPE 332 (594)
Q Consensus 255 ~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~g--w~~~f~~~~~~~ll~~~~~~~~l~e 332 (594)
.+....+|.++++.+++.+.+..+ ||+.|++.++..++.. +....+||
T Consensus 141 -----------------------------~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~~ 190 (405)
T TIGR00891 141 -----------------------------LISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL-WLRKNIPE 190 (405)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH-HHHHhCCC
Confidence 999999999999999999888766 9999998776655543 33445788
Q ss_pred CCchhhccCCCCCCCCcc----ccCC-ch-------hhHhhhc-cc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhC
Q psy16660 333 SLPEKVRQASWGGAPISW----EQAD-PF-------ASLRKVG-KD-QTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMG 398 (594)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~----~~~~-~~-------~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 398 (594)
+++.++++++.+...... +..+ .. ...++.. ++ +.+..+.....+..........++|.|+.+.+|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 270 (405)
T TIGR00891 191 AEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLG 270 (405)
T ss_pred ChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhC
Confidence 654332211110000000 0000 00 0001100 11 112222333333334444566678889988889
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHh-hchHhHHH
Q psy16660 399 FDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQL-MWYGFGSQMWMMWAAGILASLA-SITYPAIS 476 (594)
Q Consensus 399 ~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~-~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~ 476 (594)
++..+.+.+.+...++.+++.++.+++.||+++|+.+..+..+..+.. ..+...++.+...+..++.++. ....+...
T Consensus 271 ~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (405)
T TIGR00891 271 LSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILP 350 (405)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHH
Confidence 999999999999999999999999999999999998888776653332 2333344555555554555554 55667778
Q ss_pred HHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy16660 477 ALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 477 ~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g 518 (594)
.+++|..|+++||+++|+.+...++|..++|.++|.+.|..|
T Consensus 351 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 351 KHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred HHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999999999999999877
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-30 Score=270.53 Aligned_cols=341 Identities=16% Similarity=0.168 Sum_probs=271.5
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh
Q psy16660 101 HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL 180 (594)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~ 180 (594)
.+....++..++... ..|.+|.+.++++.++.+. |++.+++.++..++.++.|+++||+|||+++..+.++.+++.+.
T Consensus 9 ~~~~~~~~~~~~~~~-~~~~~p~~~~~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 86 (385)
T TIGR00710 9 LLGCLSILGPLGIDM-YLPAFPEIAADLSTPASIV-QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLG 86 (385)
T ss_pred HHHHHHHHHHHHHHH-hcccHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH
Confidence 333344445555555 7899999999999887766 99999999999999999999999999999999998887777666
Q ss_pred --hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhh
Q psy16660 181 --MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSV 257 (594)
Q Consensus 181 --~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 257 (594)
++.+++.+++.|++.|++ +...+...+++.|++|+++|++++++
T Consensus 87 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 133 (385)
T TIGR00710 87 LALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSI--------------------------------- 133 (385)
T ss_pred HHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHH---------------------------------
Confidence 556899999999999998 66778889999999999999999999
Q ss_pred hhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchh
Q psy16660 258 VFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEK 337 (594)
Q Consensus 258 ~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~ 337 (594)
.+....+|..+||.+++++.++.+||+.+++.++..++..+..++..||+++++
T Consensus 134 --------------------------~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (385)
T TIGR00710 134 --------------------------LMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYE 187 (385)
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 999999999999999999999899999999988877777666666677754332
Q ss_pred hccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy16660 338 VRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVS 417 (594)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~ 417 (594)
+++ +.++..+++++.+++|.++...+...+..........+.|.++++.+|.++.+.+.+.....++.++
T Consensus 188 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 257 (385)
T TIGR00710 188 ARI----------QISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIF 257 (385)
T ss_pred ccC----------CHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 211 1122335566777899988877776666666666777778888888899999999999999999999
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHH
Q psy16660 418 AQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFG-----SQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLV 491 (594)
Q Consensus 418 ~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~ 491 (594)
+.++.+++.||+++|+.+..+..+..++..++... +..+..+...++.|++ +...+.......|..| +++|++
T Consensus 258 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~ 336 (385)
T TIGR00710 258 GGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTA 336 (385)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHH
Confidence 99999999999999999888877777766555442 1233344455667777 6677777788888775 678999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q psy16660 492 QGMVTGMRGLCNGLGPAMFGLI 513 (594)
Q Consensus 492 ~g~~~~~~~lg~~lg~~~~g~l 513 (594)
.++.+.....++.+.+.+.+.+
T Consensus 337 ~~~~~~~~~~~g~i~~~~~~~~ 358 (385)
T TIGR00710 337 SALFGTLRLVLGAIVGYLVSLI 358 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999988887666666666633
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-30 Score=289.40 Aligned_cols=368 Identities=16% Similarity=0.160 Sum_probs=279.0
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHH
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISI 194 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l 194 (594)
..+++|.+.++++.+..+. +++.+++.++.+++.+++|+++||+|||+++++++++.+++.++ ++.++++++++|++
T Consensus 186 is~ilp~i~~~~gls~~~~-g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l 264 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGK-GMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLL 264 (742)
T ss_pred HHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5777888888888877666 99999999999999999999999999999999988777776655 56689999999999
Q ss_pred HHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhh
Q psy16660 195 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSL 273 (594)
Q Consensus 195 ~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~ 273 (594)
.|++ ++..+...+++.|++|+++|++.+++
T Consensus 265 ~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~------------------------------------------------- 295 (742)
T TIGR01299 265 SGFGIGGAIPIVFSYFAEFLAQEKRGEHLSW------------------------------------------------- 295 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-------------------------------------------------
Confidence 9998 77788999999999999999999998
Q ss_pred hhcccccccchhHHHhhHHHHHHHHHHHHHHh-------------cChHHHHHHHHHHHHHHHHHhheeccCCCchhhcc
Q psy16660 274 AYGLSFSFSQVSATFAASMVFSPALGAYLEKT-------------YSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQ 340 (594)
Q Consensus 274 ~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~-------------~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~ 340 (594)
+.+...+|.++++.++.++... .+||+.+++.++..++.+ +..+++||+|+....+
T Consensus 296 ----------~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~l-l~~~~lPESPrwL~~~ 364 (742)
T TIGR01299 296 ----------LCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAI-GALTFMPESPRFFLEN 364 (742)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHC
Confidence 8888899999999888776543 358999988887766654 4456699997642211
Q ss_pred CCCC-------------CC----CC------------------ccccC-C----------------chhhHhhhccch--
Q psy16660 341 ASWG-------------GA----PI------------------SWEQA-D----------------PFASLRKVGKDQ-- 366 (594)
Q Consensus 341 ~~~~-------------~~----~~------------------~~~~~-~----------------~~~~~~~~~~~~-- 366 (594)
.+.+ .. .. +.+.. . .+.+++.+++.+
T Consensus 365 gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~ 444 (742)
T TIGR01299 365 GKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVR 444 (742)
T ss_pred CCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHH
Confidence 1000 00 00 00000 0 001233344332
Q ss_pred -hHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----h-------------------------------------CC-----
Q psy16660 367 -TILMLCVTVFLSYLPEAGQYSCLFVYLKLV----M-------------------------------------GF----- 399 (594)
Q Consensus 367 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------------------------------------g~----- 399 (594)
+.+.+++..++..+.++++..|+|.++++. + |+
T Consensus 445 ~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (742)
T TIGR01299 445 EITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSV 524 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhccccccc
Confidence 345566667777788888889999765431 0 00
Q ss_pred C--------------------------------------------------------------------hhHHHHHHHHH
Q psy16660 400 D--------------------------------------------------------------------EVHVAVFIAVI 411 (594)
Q Consensus 400 s--------------------------------------------------------------------~~~~g~~~~~~ 411 (594)
+ .........+.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~ 604 (742)
T TIGR01299 525 SFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLG 604 (742)
T ss_pred ccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHH
Confidence 0 00123445667
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchH
Q psy16660 412 GTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGL 490 (594)
Q Consensus 412 ~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~ 490 (594)
+++.+++.++.+++.||+|||+++..+.++.+++++++.+.++.+.+++..++.++. +..++....+++|.+|++.||+
T Consensus 605 ~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgt 684 (742)
T TIGR01299 605 TLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRAT 684 (742)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 788899999999999999999999999999999988888877666666666666766 6778889999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhccC
Q psy16660 491 VQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIPE 570 (594)
Q Consensus 491 ~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 570 (594)
++|+.+....+|.+++|.+++.+.+.. . ..+|++++++.+++.++.+++|+
T Consensus 685 a~Gi~~~~~rlGaiigp~i~g~L~~~~-~----------------------------~~pf~i~a~~lll~~ll~~~LPE 735 (742)
T TIGR01299 685 AFGFLNALCKAAAVLGILIFGSFVGIT-K----------------------------AAPILFASAALACGGLLALKLPD 735 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-h----------------------------HHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999887642 2 25777777777777777777787
Q ss_pred cccc
Q psy16660 571 SIVT 574 (594)
Q Consensus 571 ~~~~ 574 (594)
++++
T Consensus 736 T~~~ 739 (742)
T TIGR01299 736 TRGQ 739 (742)
T ss_pred Cccc
Confidence 6543
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-30 Score=272.49 Aligned_cols=343 Identities=18% Similarity=0.251 Sum_probs=269.9
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHH-hhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhh
Q psy16660 100 YHALVVIFLEFFAWGLLTMPIISVLN-RTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPI 178 (594)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~ 178 (594)
+.++...++..++... ..|+++.+. ++++.+..+. |++.+...+...+.+++.|+++||+|||+++..+.++.+++.
T Consensus 13 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~-gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~ 90 (400)
T PRK11646 13 YFLLIDNMLVVLGFFV-VFPLISIRFVDQLGWAAVMV-GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGF 90 (400)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCcHHHH-HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHH
Confidence 5666778888888777 789988765 5566665555 999999999999999999999999999999999988888777
Q ss_pred hh--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhh
Q psy16660 179 PL--MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTF 255 (594)
Q Consensus 179 ~~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 255 (594)
++ +..+++++++.|+++|++ +...+...+++.|.+|+++|++++++
T Consensus 91 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------------------------------- 139 (400)
T PRK11646 91 ATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSL------------------------------- 139 (400)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-------------------------------
Confidence 66 456899999999999998 45667778999999999999999999
Q ss_pred hhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCc
Q psy16660 256 SVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLP 335 (594)
Q Consensus 256 ~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~ 335 (594)
.....++|..+||.+++++. .+||++.|++.++..++..++..+..||.++
T Consensus 140 ----------------------------~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~ 190 (400)
T PRK11646 140 ----------------------------LMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL 190 (400)
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 99999999999999999998 6899999999887777665554455665321
Q ss_pred hhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Q psy16660 336 EKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLS 415 (594)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~ 415 (594)
++ . +++..+++++.+++|.++...+..+..+........+.|.|.++..+ ++.+.+.+++..+++.
T Consensus 191 ~~--~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~ 256 (400)
T PRK11646 191 ST--V-----------RTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLS 256 (400)
T ss_pred cc--c-----------chhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHH
Confidence 10 0 01122456677788888776665555444444455678888887644 7788898888887777
Q ss_pred HHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHH
Q psy16660 416 VSAQIILGCLMN-VLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQG 493 (594)
Q Consensus 416 ~~~~~~~g~l~d-r~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g 493 (594)
.......+++.| |++.++.+..+..+.+++.+++...++.+...+..++++.+ +...|...+++.+..|++++|+++|
T Consensus 257 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g 336 (400)
T PRK11646 257 LTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMG 336 (400)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhh
Confidence 655555555554 56666677777777788877777777776666666677777 6777888999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhh
Q psy16660 494 MVTGMRGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 494 ~~~~~~~lg~~lg~~~~g~l~~~~g 518 (594)
+.+...++|..+||.++|.++|..+
T Consensus 337 ~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 337 FSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHh
Confidence 9999999999999999999999864
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=277.24 Aligned_cols=341 Identities=9% Similarity=0.054 Sum_probs=256.5
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHH
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISI 194 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l 194 (594)
.....|.+.++++.+..+. |++.+++.+++.+++++.|+++||+|||+++..+.++..++..+ ++.+++++++.|++
T Consensus 27 ~~~~~~~l~~~~~~s~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 105 (412)
T TIGR02332 27 IGFAGLTMGKDLGLSATMF-GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRIL 105 (412)
T ss_pred HHHHHHhhHhhcCCCHHHH-HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 6667788889998887766 99999999999999999999999999999999998888877666 56799999999999
Q ss_pred HHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhh
Q psy16660 195 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSL 273 (594)
Q Consensus 195 ~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~ 273 (594)
+|++ ++..+...+++.|++|+++|++++++
T Consensus 106 ~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~------------------------------------------------- 136 (412)
T TIGR02332 106 VGIAEAGFLPGILLYLTFWFPAYFRARANAL------------------------------------------------- 136 (412)
T ss_pred HHHHHhhHHHHHHHHHHHHcCHHHHHHHHHH-------------------------------------------------
Confidence 9998 66777778899999999999999999
Q ss_pred hhcccccccchhHHHhhHHHHHHHHHHHHHH------hcChHHHHHHHHHHHHHHHHHhheeccCCCchhh-----ccC-
Q psy16660 274 AYGLSFSFSQVSATFAASMVFSPALGAYLEK------TYSLSLVVAVATAVAILDVFFILVAVPESLPEKV-----RQA- 341 (594)
Q Consensus 274 ~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~------~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~-----~~~- 341 (594)
++...++|.++++.+++++.+ ..|||+.|++.+++.++..++.++++||++++.+ +++
T Consensus 137 ----------~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~ 206 (412)
T TIGR02332 137 ----------FMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKA 206 (412)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHH
Confidence 999999999999999998874 3699999999988887766666777888764311 000
Q ss_pred -----CCCCC----CC---ccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-hCCChhHHHHHH
Q psy16660 342 -----SWGGA----PI---SWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLV-MGFDEVHVAVFI 408 (594)
Q Consensus 342 -----~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~ 408 (594)
+.++. .. +.+.......++.+ +++.++...+..++.........+++|.|+++. .|.+..+.+.+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~ 285 (412)
T TIGR02332 207 LKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREI-FTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLA 285 (412)
T ss_pred HHHHHHhccccccccccccccccccHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHh
Confidence 00000 00 00000111234444 357788877777777777888889999999873 367788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCc
Q psy16660 409 AVIGTLSVSAQIILGCLMNVLGAKHT-IIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDAD 486 (594)
Q Consensus 409 ~~~~i~~~~~~~~~g~l~dr~g~~~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~ 486 (594)
....++.+++.++.|++.||+++|+. .....++..+++.+....++....+.+..+.+++ ....+.......+..|++
T Consensus 286 ~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 365 (412)
T TIGR02332 286 AIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQ 365 (412)
T ss_pred hHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchH
Confidence 99999999999999999999987664 3444444444433332222222222223333333 223344445556778999
Q ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy16660 487 RQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 487 ~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g 518 (594)
+||++.|+.+...++|++++|.+.|.+.|..|
T Consensus 366 ~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g 397 (412)
T TIGR02332 366 ARAIAIAVINATGNIGSALSPFLIGILKDATG 397 (412)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhcccccccCC
Confidence 99999999999999999999999999998764
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-29 Score=270.18 Aligned_cols=374 Identities=14% Similarity=0.133 Sum_probs=275.5
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhh
Q psy16660 97 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL 176 (594)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i 176 (594)
+.+....+..++..++.+. ..+.++.+.++++.+..+. |++.+.+.++..++.++.|+++||+|||+++..+.++.++
T Consensus 13 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~g~s~~~~-g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~ 90 (402)
T TIGR00897 13 LNLLWGYIGVVVFMTGDGL-EQGWLSPFLKALGLSPQQS-ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCV 90 (402)
T ss_pred chhhHHHHHHHHHHHhhhh-HHHhHHHHHHHhCCCHHHh-HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 4456666677777777676 6778888888888776665 9999999999999999999999999999999988877776
Q ss_pred hhhhh------cchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhcc
Q psy16660 177 PIPLM------TLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISG 249 (594)
Q Consensus 177 ~~~~~------~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 249 (594)
+..++ ..+++.+++.|+++|++ +...+...+.+.+.+|+++|++++|+
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~------------------------- 145 (402)
T TIGR00897 91 GHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGW------------------------- 145 (402)
T ss_pred HHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHH-------------------------
Confidence 64431 24788888999999998 55566677888899999999999999
Q ss_pred ccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHH-HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhe
Q psy16660 250 VFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASM-VFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILV 328 (594)
Q Consensus 250 ~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~-~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~ 328 (594)
.....++|. ++||.+++++.+.+||+..+|......++..++.++
T Consensus 146 ----------------------------------~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 191 (402)
T TIGR00897 146 ----------------------------------FWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALF 191 (402)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHh
Confidence 888889886 689999999888888776666554443333333344
Q ss_pred eccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHH
Q psy16660 329 AVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFI 408 (594)
Q Consensus 329 ~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 408 (594)
..++.++++++++ + .+..+..+.++.++++|.++...+..++......+..++.|.|.++ +|++..+.+.+.
T Consensus 192 ~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~ 263 (402)
T TIGR00897 192 SNKDIFTPQHMQT--R-----EKFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIW 263 (402)
T ss_pred ccCCCCCcccccC--C-----cchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHH
Confidence 4554422211110 0 0111223446677899999888877777777777888899999866 799999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHH-HHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHh-hchHhHHHHHHhh
Q psy16660 409 AVIGTLSVSAQIILGCLMNVLGAKHTII-IGLVFEMLQLMWYGF-----GSQMWMMWAAGILASLA-SITYPAISALVSM 481 (594)
Q Consensus 409 ~~~~i~~~~~~~~~g~l~dr~g~~~~l~-~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~ 481 (594)
....++.+++.++.|++.||+++|+.+. .+.+...++.+.+.. .++.+..++..++.|++ +...+ ......+
T Consensus 264 ~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~ 342 (402)
T TIGR00897 264 GTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPT 342 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 9999999999999999999999887653 333333333222221 23455556666677776 44433 3455566
Q ss_pred cCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHH
Q psy16660 482 HSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAA 561 (594)
Q Consensus 482 ~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 561 (594)
. ++++||++.|+.+...++++.++|.+.|.+++..|+. ..+.+.+++.+++
T Consensus 343 ~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~----------------------------~~~~~~a~~~~i~ 393 (402)
T TIGR00897 343 L-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAI----------------------------GVVWIFAALYVVS 393 (402)
T ss_pred h-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH----------------------------HHHHHHHHHHHHH
Confidence 5 4568999999999999999999999999999987754 6777777777666
Q ss_pred HHHHHhcc
Q psy16660 562 LLVATFIP 569 (594)
Q Consensus 562 ~~~~~~~~ 569 (594)
.+...++|
T Consensus 394 ~~~~~~~~ 401 (402)
T TIGR00897 394 AFLTAFIR 401 (402)
T ss_pred HHHHHHhc
Confidence 66665543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-30 Score=281.90 Aligned_cols=355 Identities=16% Similarity=0.281 Sum_probs=288.9
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh
Q psy16660 101 HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL 180 (594)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~ 180 (594)
.+....++..+.... ..+.+|.+.++++.+..+. +++.+.+.++..++.++.|+++||+|||++++++.++.+++..+
T Consensus 6 ~~~~~~~~~~~~~~~-~~~~~p~~~~~~g~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 83 (485)
T TIGR00711 6 VLMLGTFMAVLDSTI-VNVAIPTIAGDLGSSLSQV-QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhcCCChhhh-hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 344555666666565 7889999999998877666 99999999999999999999999999999999998888887766
Q ss_pred --hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhh
Q psy16660 181 --MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSV 257 (594)
Q Consensus 181 --~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 257 (594)
++.+++.+++.|+++|++ +...+...+++.|++|+++|++++++
T Consensus 84 ~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~--------------------------------- 130 (485)
T TIGR00711 84 CGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAI--------------------------------- 130 (485)
T ss_pred HhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHH---------------------------------
Confidence 566999999999999998 66778889999999999999999999
Q ss_pred hhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchh
Q psy16660 258 VFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEK 337 (594)
Q Consensus 258 ~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~ 337 (594)
......+|..+||.+++++.++++||+.|++.+++.++..++..+.+||+++++
T Consensus 131 --------------------------~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (485)
T TIGR00711 131 --------------------------WGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAA 184 (485)
T ss_pred --------------------------HHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccc
Confidence 999999999999999999999999999999998887777766666677754332
Q ss_pred hccCCCC------------------CCCCcc-------------------------ccCCchhhHhhhccchhHHHHHHH
Q psy16660 338 VRQASWG------------------GAPISW-------------------------EQADPFASLRKVGKDQTILMLCVT 374 (594)
Q Consensus 338 ~~~~~~~------------------~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 374 (594)
.++.+.. +.+..+ +.+++..+. +.+++|.++..++.
T Consensus 185 ~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 263 (485)
T TIGR00711 185 SENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDL-RLFKYRNFTIGCVY 263 (485)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCH-HHHcCCChHHHHHH
Confidence 2211110 000011 111222222 35578888888888
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhh---
Q psy16660 375 VFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGF--- 451 (594)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~--- 451 (594)
.++.++.......++|.|+++.+|.++.+.|+......++.+++.++.|++.||+++|+.+..+..+.+++..++.+
T Consensus 264 ~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~ 343 (485)
T TIGR00711 264 MSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT 343 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC
Confidence 88888887888889999999989999999999999999999999999999999999999999998888888877662
Q ss_pred -hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy16660 452 -GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMF 517 (594)
Q Consensus 452 -~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~ 517 (594)
..+.+......++.|++ +...+.......+..|++++|+++|+.+..+++|+.+|+.+.|.+++..
T Consensus 344 ~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 344 PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445566667778888 7777777777788899999999999999999999999999999998753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=272.36 Aligned_cols=341 Identities=20% Similarity=0.379 Sum_probs=273.5
Q ss_pred HHHHHHHHHHhhhhhhhHHH-HHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh-
Q psy16660 103 LVVIFLEFFAWGLLTMPIIS-VLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL- 180 (594)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~- 180 (594)
++..++..++.+. ..+.+| .+.++++.+..+. |++.+++.++..++.++.|+++||+|||+++.++.++.+++..+
T Consensus 2 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 79 (352)
T PF07690_consen 2 FLAFFLSGFGFSI-ISPALPLYLAEELGLSPSQI-GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL 79 (352)
T ss_dssp HHHHHHHHHHHHH-HHHHHH-HHHCCSTTTSHCH-HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence 4556677777777 788999 7888888777776 99999999999999999999999999999999998888888443
Q ss_pred -hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhh
Q psy16660 181 -MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVV 258 (594)
Q Consensus 181 -~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 258 (594)
++.+.+.+++.|++.|++ +...+...+++.|++|+++|++++++
T Consensus 80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------------------------------- 125 (352)
T PF07690_consen 80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGI---------------------------------- 125 (352)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHH----------------------------------
T ss_pred hhhhhHHHHhhhccccccccccccccccccccccchhhhhhhcccc----------------------------------
Confidence 347888999999999998 67888899999999999999999999
Q ss_pred hhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhh
Q psy16660 259 FAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKV 338 (594)
Q Consensus 259 ~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~ 338 (594)
.+...++|.++||.+++++.+..+||++|++.+++.++..++..+++++++++++
T Consensus 126 -------------------------~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~ 180 (352)
T PF07690_consen 126 -------------------------LSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRE 180 (352)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT
T ss_pred -------------------------ccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccc
Confidence 9999999999999999999988999999999999988877654455666554443
Q ss_pred ccCCCCCCCCccccCCchhh-HhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCC-hhHHHHHHHHHHHHHH
Q psy16660 339 RQASWGGAPISWEQADPFAS-LRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFD-EVHVAVFIAVIGTLSV 416 (594)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s-~~~~g~~~~~~~i~~~ 416 (594)
++.+.++. .+.+++..+ ++..++++.+|......++..+.......+.|.|+++.+|++ ..+.+.+.....+..+
T Consensus 181 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (352)
T PF07690_consen 181 RESPKESE---SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGI 257 (352)
T ss_dssp --SSTTTT-----HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHH
T ss_pred cccccccc---cccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 33221110 011222233 666667777775556666666667778889999988888999 8999999999999999
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHH
Q psy16660 417 SAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGS---QMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQ 492 (594)
Q Consensus 417 ~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~ 492 (594)
++.++.+++.||+++++..........+..+.+.... +.+..+...++.|++ +...+...+++.+..|++++|++.
T Consensus 258 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 337 (352)
T PF07690_consen 258 IGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAF 337 (352)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999988777777776666666655433 345566677778888 788999999999999999999999
Q ss_pred HHHHHHHHHHHhHHH
Q psy16660 493 GMVTGMRGLCNGLGP 507 (594)
Q Consensus 493 g~~~~~~~lg~~lg~ 507 (594)
|+.+...++++.++|
T Consensus 338 g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 338 GLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC
Confidence 999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-29 Score=269.77 Aligned_cols=354 Identities=14% Similarity=0.125 Sum_probs=264.7
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhh
Q psy16660 97 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL 176 (594)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i 176 (594)
+.++.+++..++..++... .....+.+.++++.++... +++.+.+.+++.++.|+.|+++||+|||++++++.++.++
T Consensus 3 ~~f~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~-~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~ 80 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNA-LLFAAIALLKELHYPDWSQ-PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLL 80 (393)
T ss_pred CcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHH
Confidence 3456677777888876665 4555556678888776655 9999999999999999999999999999999999888777
Q ss_pred hhhhhcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhh
Q psy16660 177 PIPLMTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTF 255 (594)
Q Consensus 177 ~~~~~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 255 (594)
+.+++..... .++.|+++|++ +...|...+++.|++|+++|++++++
T Consensus 81 ~~~~~~~~~~-~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~------------------------------- 128 (393)
T PRK11195 81 GCLLMLFGIH-PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGW------------------------------- 128 (393)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH-------------------------------
Confidence 6555222111 27889999998 66778889999999999999999999
Q ss_pred hhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCc
Q psy16660 256 SVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLP 335 (594)
Q Consensus 256 ~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~ 335 (594)
.+....+|.++||.+++++.+. .|+.++.+.+...++.. +..+.+||+++
T Consensus 129 ----------------------------~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~-~~~~~l~~~~~ 178 (393)
T PRK11195 129 ----------------------------MEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAA-LFNLFIPRLGA 178 (393)
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHhcCCCCcc
Confidence 9999999999999999999885 48877777765554443 33456787653
Q ss_pred hhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Q psy16660 336 EKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLS 415 (594)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~ 415 (594)
++++++. + . .....+..+.++.++++|.+........+.+..........+.|+++.+|.++.+.|......+++.
T Consensus 179 ~~~~~~~-~--~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~ 254 (393)
T PRK11195 179 RRPGQSW-N--P-IALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGI 254 (393)
T ss_pred cccccCC-C--H-HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 3221110 0 0 0000111233456678887766555554545555556667778888889999999999999999999
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCcc-chHHHH
Q psy16660 416 VSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADR-QGLVQG 493 (594)
Q Consensus 416 ~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~-~g~~~g 493 (594)
+++.++.+++.||.++++.+..+.. .++..+++.+.++.+......++.|++ +...+..++.+++..|++. +|++.+
T Consensus 255 i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a 333 (393)
T PRK11195 255 AVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIA 333 (393)
T ss_pred HHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHH
Confidence 9999999999999998887777753 344444455556666666667677887 6777778888888766654 799999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 494 MVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 494 ~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
+.+..++++..++..+.+.+ +..|..
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~-~~~~~~ 359 (393)
T PRK11195 334 VQNFNENLAMLLMLGLYSLL-VKLGVP 359 (393)
T ss_pred HHhHHHHHHHHHHHHHHHHH-HHcCCC
Confidence 99999999999999999855 566654
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-29 Score=267.75 Aligned_cols=342 Identities=13% Similarity=0.099 Sum_probs=259.2
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhh
Q psy16660 97 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL 176 (594)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i 176 (594)
+.++.++...++..++.+. ..|.+|.+.++++.+..+. |++.+.+.++..++.++.|+++||+|||+++..+.++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~-~~~~lp~~~~~~~~s~~~~-G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~ 83 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAV-LNTLVPLWLAQEHLPTWQV-GVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAA 83 (381)
T ss_pred HHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356667777788888787 8999999999998876655 9999999999999999999999999999999999888887
Q ss_pred hhhh--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccch
Q psy16660 177 PIPL--MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAV 253 (594)
Q Consensus 177 ~~~~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 253 (594)
+..+ ++.+++.+++.|+++|++ +...+...+.+.+..++++|++++++
T Consensus 84 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 134 (381)
T PRK03633 84 GCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAA----------------------------- 134 (381)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-----------------------------
Confidence 7665 566999999999999998 55667777778888888899999988
Q ss_pred hhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCC
Q psy16660 254 TFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPES 333 (594)
Q Consensus 254 ~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~ 333 (594)
.....++|..+||.+++.+.+...+...+. .+........+.+...+++
T Consensus 135 ------------------------------~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 183 (381)
T PRK03633 135 ------------------------------YMMVYYLGTVLGQLLVSKVSTELMSVLPWV-TGLVLAAILPLLFTRILNQ 183 (381)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHhcccccccchHHHH-HHHHHHHHHHHHHhcccCC
Confidence 999999999999999999876543333333 2222222111212112221
Q ss_pred CchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q psy16660 334 LPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGT 413 (594)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i 413 (594)
. ++ + + +..+.++.+++|.++......+.....+...+.++|.|.++ .|.++.+.|...+...+
T Consensus 184 ~--~~-~----------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~ 246 (381)
T PRK03633 184 Q--AE-N----------H---DSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVS 246 (381)
T ss_pred C--CC-C----------C---CCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 1 10 0 0 01223445677777765544444445555667788999887 59999999999999999
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHH
Q psy16660 414 LSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQ 492 (594)
Q Consensus 414 ~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~ 492 (594)
+.+++++..+++.||+++|+.+..+..+..++.+.+. . .+..+....+.+++ ....|...+.+.+..|+++++.+.
T Consensus 247 ~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~ 323 (381)
T PRK03633 247 AGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMN 323 (381)
T ss_pred HHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999999999999999998888777777665443 1 12233344556665 566788888889999888888888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 493 GMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 493 g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
+..+...++|..++|.+.|.+.|..|+.
T Consensus 324 ~~~~~~~~lG~~igp~~~G~l~~~~g~~ 351 (381)
T PRK03633 324 QALLLSYTVGSLLGPSFTAMLMQNYSDN 351 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 8888899999999999999999987754
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-29 Score=270.80 Aligned_cols=331 Identities=15% Similarity=0.158 Sum_probs=255.3
Q ss_pred hhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHH
Q psy16660 116 LTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMIS 193 (594)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~ 193 (594)
+..|.+|.+.++++.+.... ++..+++.+++.++++++|+++||+|||++++.+.++.+++.++ ++.+++.++++|+
T Consensus 34 ~~~p~l~~i~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~ 112 (413)
T PRK15403 34 LIQPGIINVVRDFNADVSLA-PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARF 112 (413)
T ss_pred hhccCHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 37899999999998877766 99999999999999999999999999999999998888777666 5679999999999
Q ss_pred HHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhh
Q psy16660 194 ISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERS 272 (594)
Q Consensus 194 l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~ 272 (594)
++|++ +...+...+++.|++|+++|++++++
T Consensus 113 l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 144 (413)
T PRK15403 113 IQGTSICFIATVGYVTVQEAFGQTKGIKLMAI------------------------------------------------ 144 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH------------------------------------------------
Confidence 99998 44445567888899998889998888
Q ss_pred hhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCCcccc
Q psy16660 273 LAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQ 352 (594)
Q Consensus 273 ~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~ 352 (594)
......+|..+||.+++++.++.|||+.|++.++..++..+..++.+||++++++++ ...
T Consensus 145 -----------~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~---------~~~ 204 (413)
T PRK15403 145 -----------ITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVP---------FSA 204 (413)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCC---------CCh
Confidence 899999999999999999998889999999999888877666566678865322111 011
Q ss_pred CCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Q psy16660 353 ADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAK 432 (594)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~ 432 (594)
++..++++..+|||.++...+..++..........+.|.++++.+|.++.+.++.......+.+++..+.+++.+|..++
T Consensus 205 ~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~ 284 (413)
T PRK15403 205 KSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEP 284 (413)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch
Confidence 22345777888999999988887777777777777889999998899999999998888888888888888877555444
Q ss_pred HHHHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHH
Q psy16660 433 HTIIIGLVFEMLQLMWYG-----FGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLG 506 (594)
Q Consensus 433 ~~l~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg 506 (594)
+.+.....+..++..++. ..++.+..++..++.++| +...|...+..-.. .+..+|++.++.+.....+..++
T Consensus 285 ~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~ 363 (413)
T PRK15403 285 RFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVS 363 (413)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHH
Confidence 443333223233322222 122333345666777777 67777776433221 23347999999999999999999
Q ss_pred HHHHHHHHHH
Q psy16660 507 PAMFGLIFYM 516 (594)
Q Consensus 507 ~~~~g~l~~~ 516 (594)
+...+++.+.
T Consensus 364 ~~~~g~~~~~ 373 (413)
T PRK15403 364 VEIGRWLWFN 373 (413)
T ss_pred HHHHHHHHHc
Confidence 9999988765
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=264.48 Aligned_cols=361 Identities=14% Similarity=0.157 Sum_probs=291.0
Q ss_pred hHHHHHHHHHHHHhhh---hhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhh
Q psy16660 100 YHALVVIFLEFFAWGL---LTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL 176 (594)
Q Consensus 100 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i 176 (594)
+.+++..++...++.+ +..-..|.+.++.+.+..+. |++.+++.+.+.++..+.|.++||.+.|..+-+++++.++
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~l-G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai 106 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQL-GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHH
Confidence 3445566666666655 45677888898887766666 9999999999999999999999999999999999999999
Q ss_pred hhhh--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccch
Q psy16660 177 PIPL--MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAV 253 (594)
Q Consensus 177 ~~~~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 253 (594)
..++ ++.+.+.+.+..+++|+. +...|++...+..|++++|||+..++
T Consensus 107 ~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~si----------------------------- 157 (448)
T COG2271 107 VNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSI----------------------------- 157 (448)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEE-----------------------------
Confidence 8887 555889999999999998 66789999999999999999999999
Q ss_pred hhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHH--HHHHHhcChHHHHHHHHHHHHHHHHHhheecc
Q psy16660 254 TFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALG--AYLEKTYSLSLVVAVATAVAILDVFFILVAVP 331 (594)
Q Consensus 254 ~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~--~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~ 331 (594)
++.+-++|..+.|++. +++..+.+||..|++.++++++..++.++.++
T Consensus 158 ------------------------------Wn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~r 207 (448)
T COG2271 158 ------------------------------WNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLR 207 (448)
T ss_pred ------------------------------ehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999998 88888889999999999999998888888888
Q ss_pred CCCchhh------ccCCCCCCCCccccCCc---h-hhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCh
Q psy16660 332 ESLPEKV------RQASWGGAPISWEQADP---F-ASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDE 401 (594)
Q Consensus 332 e~~~~~~------~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 401 (594)
++|+..- -+.|..+...+.++.++ + .-.+.+++||.+|.+++..++.+..-.++..|.|.|+.++.|++.
T Consensus 208 d~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~ 287 (448)
T COG2271 208 DRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSL 287 (448)
T ss_pred CCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCH
Confidence 8875321 11111111111111111 1 234557899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHH-HHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHh-hchHhHH
Q psy16660 402 VHVAVFIAVIGTLSVSAQIILGCLMNVL--GAKHTII-IGLVFEMLQLMWYGFGS--QMWMMWAAGILASLA-SITYPAI 475 (594)
Q Consensus 402 ~~~g~~~~~~~i~~~~~~~~~g~l~dr~--g~~~~l~-~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~~-~~~~~~~ 475 (594)
.+++...+.+-++.++|.++.|+++||+ |||.... +.++...++...+...+ +.+...+.++..|+. ..-.-+.
T Consensus 288 ~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLi 367 (448)
T COG2271 288 VKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLI 367 (448)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999998 4554443 34444455555555544 346666666666666 4444556
Q ss_pred HHHHhhcCCCccchHHHHHHHHHHHH-HHhHHHHHHHHHHHHhhcc
Q psy16660 476 SALVSMHSDADRQGLVQGMVTGMRGL-CNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 476 ~~~~~~~~p~~~~g~~~g~~~~~~~l-g~~lg~~~~g~l~~~~g~~ 520 (594)
-....|..|++..|++.|+...+.++ |...+....|++.|.+|+.
T Consensus 368 Gl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~ 413 (448)
T COG2271 368 GLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWD 413 (448)
T ss_pred HHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCc
Confidence 66778999999999999999999999 8999999999998887765
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.8e-30 Score=276.14 Aligned_cols=365 Identities=12% Similarity=0.081 Sum_probs=258.2
Q ss_pred hhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhhhc------chHHHHHHH
Q psy16660 118 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT------LDTWWFFAM 191 (594)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~~~------~~~~~l~~~ 191 (594)
...+|.+.++ +.+..+. |++.+.+.++..+++++.|+++||+|||++++++.++.+++.++++ .+++.+++.
T Consensus 49 ~~~~p~l~~~-g~s~~~~-g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 126 (452)
T PRK11273 49 ALAMPYLVEQ-GFSRGDL-GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL 126 (452)
T ss_pred HHhhHHHHHc-CCCHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHH
Confidence 4566776666 6666555 9999999999999999999999999999999999887777766532 267888999
Q ss_pred HHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhh
Q psy16660 192 ISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHE 270 (594)
Q Consensus 192 r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~ 270 (594)
|++.|++ +...+.....+.+++|+++|++++++
T Consensus 127 ~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~---------------------------------------------- 160 (452)
T PRK11273 127 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV---------------------------------------------- 160 (452)
T ss_pred HHHHHHHHhccchHHHHHHHHhCChHHHHHHHHH----------------------------------------------
Confidence 9999998 55567777888999999999999998
Q ss_pred hhhhhcccccccchhHHHhhHH-HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhcc------CCC
Q psy16660 271 RSLAYGLSFSFSQVSATFAASM-VFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQ------ASW 343 (594)
Q Consensus 271 r~~~~g~~~~~~~~~~~~~~g~-~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~------~~~ 343 (594)
++.+..+|. ..+|+++..+....+||+.|++.+++.++..++.++++||++++...+ .+.
T Consensus 161 -------------~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (452)
T PRK11273 161 -------------WNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDY 227 (452)
T ss_pred -------------HHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhcc
Confidence 888888775 456665444444459999999988877776666666678765431110 000
Q ss_pred CCC-CCccccCCchhh--HhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHH
Q psy16660 344 GGA-PISWEQADPFAS--LRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQI 420 (594)
Q Consensus 344 ~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~ 420 (594)
++. ..+.+++.+.++ .+..+|++.+|...+..++.+........++|.|+++..|++..+.+.......++.+++.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~ 307 (452)
T PRK11273 228 PDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTL 307 (452)
T ss_pred ccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 000 000001111122 12366889999988888888877788888999999998899999999998899999999999
Q ss_pred HHHHHHHhh--chHHHH-HHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHH
Q psy16660 421 ILGCLMNVL--GAKHTI-IIGLVFEMLQLMWYGF--GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGM 494 (594)
Q Consensus 421 ~~g~l~dr~--g~~~~l-~~~~~~~~i~~~~~~~--~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~ 494 (594)
+.|++.||+ +||... .....+..++.+.+.. ..+.+..++..++.|.+ .........+..|.+|++.+|+++|+
T Consensus 308 ~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 387 (452)
T PRK11273 308 LCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGF 387 (452)
T ss_pred HHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHH
Confidence 999999999 444332 2222333333332222 22333333333444443 22223344567789999999999999
Q ss_pred HHHHHHHHHhH-HHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhccCc
Q psy16660 495 VTGMRGLCNGL-GPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIPES 571 (594)
Q Consensus 495 ~~~~~~lg~~l-g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 571 (594)
.+...++|+.+ +|.++|.+.|+.|+. ..|.+++++.+++++....+.+.
T Consensus 388 ~~~~~~~g~~~~g~~v~g~l~~~~g~~----------------------------~~f~~~~~~~~~~~~~~~~~~~~ 437 (452)
T PRK11273 388 TGLFGYLGGSVAASAIVGYTVDFFGWD----------------------------GGFMVMIGGSILAVILLIVVMIG 437 (452)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhcch----------------------------HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999998765 799999999998765 67777777666666666554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-29 Score=269.35 Aligned_cols=329 Identities=13% Similarity=0.089 Sum_probs=258.1
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHH
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISI 194 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l 194 (594)
..+.+|.+.++++.+..+. |++.+.+.++..++.++.|+++||+|||+++..+.++.+++..+ ++.+++.+++.|++
T Consensus 26 ~g~~~~~i~~~~~~s~~~~-g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l 104 (394)
T PRK03699 26 TGMVMGPIAEYFNLPVSSM-SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFV 104 (394)
T ss_pred HhhhhHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHH
Confidence 6778899999998887766 99999999999999999999999999999999988887777665 56689999999999
Q ss_pred HHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhh
Q psy16660 195 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSL 273 (594)
Q Consensus 195 ~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~ 273 (594)
+|++ +...+...+++.|.+|+++|+++.+.
T Consensus 105 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~------------------------------------------------- 135 (394)
T PRK03699 105 LGVVSGITMSIGTFLITHVYEGKQRGSRLLF------------------------------------------------- 135 (394)
T ss_pred HHHhhHhhccchhHHhhhhcccchHHHHHHH-------------------------------------------------
Confidence 9998 55667778899999998899998888
Q ss_pred hhcccccccchhHHHhhHHHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCCcccc
Q psy16660 274 AYGLSFSFSQVSATFAASMVFSPALGAYLEK-TYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQ 352 (594)
Q Consensus 274 ~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~-~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~ 352 (594)
.+...++|..++|.+.+++.. ..+||++|.+.+++.++..++.++ ++.++.++++.+ + ++
T Consensus 136 ----------~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~--~~~p~~~~~~~~-~------~~ 196 (394)
T PRK03699 136 ----------TDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF--SEFPALGKHAPK-A------DK 196 (394)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh--cCCccccccCcc-c------cC
Confidence 777888888999998887764 579999999888776665444332 121111111100 0 00
Q ss_pred CCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Q psy16660 353 ADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAK 432 (594)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~ 432 (594)
+. .+.. .++.++...+..++....+.....+.|.|+++.+|+++.+.+.+.+...++.+++.++.+++.||+++|
T Consensus 197 -~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~ 271 (394)
T PRK03699 197 -PV---AKEK-WGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQ 271 (394)
T ss_pred -cc---cccc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 00 1111 245666666777777777778888999999988999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHH
Q psy16660 433 HTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFG 511 (594)
Q Consensus 433 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g 511 (594)
+.+.....+..+.+.++...++.+...+..++.|++ +..++...+...+..| +++++..|......++|..++|.+.|
T Consensus 272 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G 350 (394)
T PRK03699 272 RILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTS 350 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHH
Confidence 988888777777666666666665555566667776 6677777777777775 45678889999999999999999999
Q ss_pred HHHHHhhcc
Q psy16660 512 LIFYMFHVD 520 (594)
Q Consensus 512 ~l~~~~g~~ 520 (594)
.+.+..|+.
T Consensus 351 ~l~~~~g~~ 359 (394)
T PRK03699 351 PIVAHFGLQ 359 (394)
T ss_pred HHHHHhCch
Confidence 999987755
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.7e-29 Score=264.64 Aligned_cols=345 Identities=13% Similarity=0.140 Sum_probs=261.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhh
Q psy16660 99 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPI 178 (594)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~ 178 (594)
+...+...+....+... ..+.+|.+.++++.+..+. ++..+++.++..++.++.|+++||+|||+.++.+.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~-~~~~lp~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~ 82 (392)
T PRK10473 5 LLCSFALVLLYPAGIDM-YLVGLPRIAADLNASEAQL-HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIAS 82 (392)
T ss_pred HHHHHHHHHHHHHHHHH-HhhhHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHH
Confidence 34455566667777666 7889999999998887666 999999999999999999999999999999999988877776
Q ss_pred hh--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhh
Q psy16660 179 PL--MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTF 255 (594)
Q Consensus 179 ~~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 255 (594)
.+ .+.+++.+++.|+++|++ +...+...+++.|.+|+++|+++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~------------------------------- 131 (392)
T PRK10473 83 LLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSL------------------------------- 131 (392)
T ss_pred HHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHH-------------------------------
Confidence 66 456889999999999998 55677888999999999999999998
Q ss_pred hhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCc
Q psy16660 256 SVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLP 335 (594)
Q Consensus 256 ~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~ 335 (594)
.+....++..++|.+++.+.+..+|++.|++.+++.++..++..+.+||+++
T Consensus 132 ----------------------------~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 132 ----------------------------LNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 8888889999999999998888899999999988877776666666777643
Q ss_pred hhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Q psy16660 336 EKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLS 415 (594)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~ 415 (594)
+++++ +.+..+..++.++++.++...+...+..........+.|.+.++.+|+++.+.+......+++.
T Consensus 184 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 252 (392)
T PRK10473 184 ARAPA-----------ASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVS 252 (392)
T ss_pred cccCC-----------ccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 32111 0111234455667888776655555444444455566677888888999999999999999999
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHH
Q psy16660 416 VSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGM 494 (594)
Q Consensus 416 ~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~ 494 (594)
+++.++.+++.||+++|+.+..+..+..++.+++...++.+..+....+.+.+ +...+... ..+..|.++++ |.
T Consensus 253 i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~~~---g~ 327 (392)
T PRK10473 253 MTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGVAM--SQALGPFSLRA---GV 327 (392)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHhccCcccc---cH
Confidence 99999999999999999999999888888877777665555444444444444 33333322 23344444443 44
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 495 VTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 495 ~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
......+++.+++.+++.+.+..|+.
T Consensus 328 ~~~~~~~~~~~g~~~~~~l~~~~g~~ 353 (392)
T PRK10473 328 ASSTLGIAQVCGSSLWIWLAAVLGIS 353 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44556678888888888888887754
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.6e-29 Score=266.86 Aligned_cols=340 Identities=13% Similarity=0.126 Sum_probs=236.3
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhCC---CchhH--HHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhh
Q psy16660 105 VIFLEFFAWGLLTMPIISVLNRTFP---DHTFL--MNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIP 179 (594)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~ 179 (594)
..+++.+.... +....|.+.++++ .++.+ ..+.+.+...++..++++++|+++||+|||+++..+.++++++.+
T Consensus 30 ~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~ 108 (432)
T PRK10406 30 GNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSL 108 (432)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 34555555555 5556677777764 23332 224445556666669999999999999999999999988888776
Q ss_pred h--hcchH--------HHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhc
Q psy16660 180 L--MTLDT--------WWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISIS 248 (594)
Q Consensus 180 ~--~~~~~--------~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (594)
+ +++++ ..+++.|+++|++ ++..+...+++.|++|+++|+++.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~------------------------ 164 (432)
T PRK10406 109 VIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASF------------------------ 164 (432)
T ss_pred HHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHH------------------------
Confidence 6 34444 4688999999998 77889999999999999999998888
Q ss_pred cccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHH--------HhcChHHHHHHHHHHHH
Q psy16660 249 GVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLE--------KTYSLSLVVAVATAVAI 320 (594)
Q Consensus 249 g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~--------~~~gw~~~f~~~~~~~l 320 (594)
.......|..+++.++..+. +.+|||++|++.+++.+
T Consensus 165 -----------------------------------~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~l 209 (432)
T PRK10406 165 -----------------------------------QYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAV 209 (432)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHH
Confidence 77777777777776655443 25799999999887776
Q ss_pred HHHHHhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHhCC
Q psy16660 321 LDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLS-YLPEAGQYSCLFVYLKLVMGF 399 (594)
Q Consensus 321 l~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ 399 (594)
+... ....+||+++.+.++. ++..++++++++++.+..++...+. ....+...+++|.|+++.+|.
T Consensus 210 l~~~-~~~~~~e~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~ 276 (432)
T PRK10406 210 VALW-LRRQLDETSQQETRAL------------KEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGM 276 (432)
T ss_pred HHHH-HHhcCCCCchHHHhhh------------cccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6433 3445777654322110 0112456667788877665554433 555667788999999888899
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHh--h--hhhHHHHHHHHHHHHHh-hchHhH
Q psy16660 400 DEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYG--F--GSQMWMMWAAGILASLA-SITYPA 474 (594)
Q Consensus 400 s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~--~--~~~~~~~~~~~~l~g~~-~~~~~~ 474 (594)
+..+.+.......++.+++..+.|++.||++||+.+..+.++.++....+. . .++.+.......+..+. +...+.
T Consensus 277 s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (432)
T PRK10406 277 HANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSI 356 (432)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 998999888888888888899999999999999887766554433322111 1 12222222222222222 344455
Q ss_pred HHHHHhhcCCCccchHHHHHHHHHHHH-HHhHHHHHHHHHHHHhh
Q psy16660 475 ISALVSMHSDADRQGLVQGMVTGMRGL-CNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 475 ~~~~~~~~~p~~~~g~~~g~~~~~~~l-g~~lg~~~~g~l~~~~g 518 (594)
...+.+|.+|++.|+++.|+.+...++ .+...|.+.+. .+..|
T Consensus 357 ~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~g 400 (432)
T PRK10406 357 SGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS-LKSIG 400 (432)
T ss_pred HHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH-HHHhC
Confidence 677889999999999999999887664 34457777774 45544
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=266.97 Aligned_cols=350 Identities=18% Similarity=0.221 Sum_probs=273.8
Q ss_pred CCchhHHHHHHHHHHHHhhhhhhhHHHHHHh-hCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHh
Q psy16660 96 EPSVYHALVVIFLEFFAWGLLTMPIISVLNR-TFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 174 (594)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~ 174 (594)
++.++.+.+..++..++.+. ..|.+|.+.+ +++.+..+. |++.+++.+...+++++.|+++||+|||++++++.+..
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~-~~~~l~~~l~~~~g~s~~~~-g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~ 83 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGA-TLPFMTIYLSRQYSLSVDLI-GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAF 83 (395)
T ss_pred CchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHH
Confidence 44566777778888888887 7999988765 566666655 99999999999999999999999999999998888777
Q ss_pred hhhhhh--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhcccc
Q psy16660 175 CLPIPL--MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVF 251 (594)
Q Consensus 175 ~i~~~~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 251 (594)
+++.++ +..+++.+++.|++.|.+ +...+...++..|..|+++|++++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------------------------- 136 (395)
T PRK10054 84 ASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSL--------------------------- 136 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHH---------------------------
Confidence 776655 556888888888888876 55667778899999999999999988
Q ss_pred chhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheecc
Q psy16660 252 AVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVP 331 (594)
Q Consensus 252 ~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~ 331 (594)
.....++|..+||.+++++.+ .+|+.+|++.++..++..++..+.+|
T Consensus 137 --------------------------------~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~ 183 (395)
T PRK10054 137 --------------------------------NYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQ 183 (395)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 888899999999999999875 79999999988877776555555566
Q ss_pred CCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--hCCChhHHHHHHH
Q psy16660 332 ESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLV--MGFDEVHVAVFIA 409 (594)
Q Consensus 332 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~~ 409 (594)
|++++++++. +...+.++.+|||.++...+..++..+.......+.+.|.... .+.+....+.+..
T Consensus 184 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 251 (395)
T PRK10054 184 RSEKAIATET------------GSVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLP 251 (395)
T ss_pred ccccccccch------------hhhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHH
Confidence 5543221110 0112235667899988887777776666555555666666543 3455666788888
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCcc
Q psy16660 410 VIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFG-SQMWMMWAAGILASLA-SITYPAISALVSMHSDADR 487 (594)
Q Consensus 410 ~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~ 487 (594)
...+.........+++.||.++|+.+..++.+..++...+.+. ++.+...+...+++++ +...|...+.+.+..|++.
T Consensus 252 ~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~ 331 (395)
T PRK10054 252 VNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM 331 (395)
T ss_pred hhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc
Confidence 8877777778889999999999999999988888887766653 4566666677788888 6777888899999999999
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 488 QGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 488 ~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
+|++.+..+ ...+|..+||.++|.++|+.|..
T Consensus 332 ~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~ 363 (395)
T PRK10054 332 KASYFSAQS-LGWLGAAINPLVSGVILTTLPPW 363 (395)
T ss_pred ceehHhHHH-HHHHHHHHHHHHHHHHHHHcChh
Confidence 999998765 67799999999999999997754
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=265.09 Aligned_cols=377 Identities=13% Similarity=0.190 Sum_probs=257.4
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHH-HhhC-CCchhHHHHHHH-----HHHHHHHHHHhhHhhhhhcccCchhhHHHHHH
Q psy16660 100 YHALVVIFLEFFAWGLLTMPIISVL-NRTF-PDHTFLMNGLIM-----GIKGFLSFLSAPLIGALSDLWGRKLFLLITVF 172 (594)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~g~~~-----s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~ 172 (594)
....+..+++.+.... ...+.|.+ .+++ +..+... |++. ++..++..+++++.|+++||+|||+++..+.+
T Consensus 25 ~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~ 102 (438)
T PRK09952 25 LGSFAGAVVDWYDFLL-YGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVW 102 (438)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHH
Confidence 3344445555555444 44444433 3333 2233333 5543 35567778999999999999999999999998
Q ss_pred Hhhhhhhh--hcchHH--------HHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhH
Q psy16660 173 VTCLPIPL--MTLDTW--------WFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWF 241 (594)
Q Consensus 173 ~~~i~~~~--~~~~~~--------~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~ 241 (594)
+.+++.++ ++++++ .+++.|+++|++ ++..+....++.|++|+++|++..+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~----------------- 165 (438)
T PRK09952 103 MMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSG----------------- 165 (438)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHH-----------------
Confidence 88887766 555665 588899999998 77788889999999999999998888
Q ss_pred HHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHH--------hcChHHHHH
Q psy16660 242 FAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEK--------TYSLSLVVA 313 (594)
Q Consensus 242 ~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~--------~~gw~~~f~ 313 (594)
...+..+|.+++..+..++.. .+|||++|+
T Consensus 166 ------------------------------------------~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~ 203 (438)
T PRK09952 166 ------------------------------------------VQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFL 203 (438)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHH
Confidence 777888888888777666542 479999999
Q ss_pred HHHHHHHHHHHHhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHH-HHHHHHHhhhhHHHHHHHH
Q psy16660 314 VATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCV-TVFLSYLPEAGQYSCLFVY 392 (594)
Q Consensus 314 ~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 392 (594)
+.+++.++. +.....+||+++..+++.+.++ .++.....+.++++|+.+.... ..++..+..+...++.|.|
T Consensus 204 ~~~~~~l~~-~~l~~~~~es~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 276 (438)
T PRK09952 204 FSIVLVLIA-LWVRNGMEESAEFEQQQHEQAA------AKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNY 276 (438)
T ss_pred HHHHHHHHH-HHHHHhCCCChhHHHHHhhccc------ccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888765553 2333456776543222211100 0001111223456666655543 3444455566677888999
Q ss_pred HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhh---h-hhHHHHHHHHHHHHHh
Q psy16660 393 LKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGF---G-SQMWMMWAAGILASLA 468 (594)
Q Consensus 393 ~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~---~-~~~~~~~~~~~l~g~~ 468 (594)
+++.+|.+...........++..+++.++.|++.||+|||+.+..+.++..++.+.+.. . ++.+......++.+++
T Consensus 277 ~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 356 (438)
T PRK09952 277 STQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIA 356 (438)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 98888988876655555667777888899999999999999888877665554433222 1 2233334444555666
Q ss_pred -hchHhHHHHHHhhcCCCccchHHHHHHHHHH-HHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcC
Q psy16660 469 -SITYPAISALVSMHSDADRQGLVQGMVTGMR-GLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVI 546 (594)
Q Consensus 469 -~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~-~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (594)
+...+..+++..|.+|.+.|+++.|+.+... .+++.++|.+.+.+.+..+.+
T Consensus 357 ~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~-------------------------- 410 (438)
T PRK09952 357 HDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGS-------------------------- 410 (438)
T ss_pred HHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------------------------
Confidence 6667788899999999999999999966554 489999999999999865321
Q ss_pred CChhHHHHHHHHHHHHHHHHhccC
Q psy16660 547 PGPPFVFGALLVIAALLVATFIPE 570 (594)
Q Consensus 547 ~~~~f~~~~~~~~~~~~~~~~~~~ 570 (594)
+...+.+.+++.+++.+..+.+++
T Consensus 411 ~~~~~~~~~~~~~i~~v~~~~~~~ 434 (438)
T PRK09952 411 WHSVAIYLLAGCLISAMTALLMKD 434 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHccc
Confidence 235666666667777766666554
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=267.67 Aligned_cols=379 Identities=16% Similarity=0.242 Sum_probs=308.7
Q ss_pred ccCCchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHH
Q psy16660 94 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 173 (594)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~ 173 (594)
.+++.+..+++..++..++..+ ..-.++.+..+...++... +++..+..+..++.++++|.++||+.||++++.+-++
T Consensus 7 lr~~~Fr~lw~a~~iS~lG~~~-~~va~~wlv~~lt~S~~~v-alv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~ 84 (524)
T PF05977_consen 7 LRNRNFRRLWIAQLISNLGDWM-QTVALAWLVTQLTGSPLMV-ALVQAASTLPILLLSLFAGALADRFDRRRILILSQLL 84 (524)
T ss_pred ccCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 4567778888889999998887 6777788888877776555 9999999999999999999999999999999988665
Q ss_pred hhhhhhh---h----cchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHh
Q psy16660 174 TCLPIPL---M----TLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMI 245 (594)
Q Consensus 174 ~~i~~~~---~----~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 245 (594)
.++.... + ..+.|.+++.-++.|++ +...|..++++.+.+|+++..+++++
T Consensus 85 ~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al--------------------- 143 (524)
T PF05977_consen 85 RALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANAL--------------------- 143 (524)
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHH---------------------
Confidence 4433222 1 12789999999999998 55677889999999999999999999
Q ss_pred hhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Q psy16660 246 SISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFF 325 (594)
Q Consensus 246 ~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~ 325 (594)
.+...+++.++||.+||.+...+|..++|.+.++..++.+..
T Consensus 144 --------------------------------------~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~ 185 (524)
T PF05977_consen 144 --------------------------------------NSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILA 185 (524)
T ss_pred --------------------------------------HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999899999999988776665544
Q ss_pred hheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHH
Q psy16660 326 ILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVA 405 (594)
Q Consensus 326 ~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g 405 (594)
+.. ++.+.++++.+. +.-.++....++.+.++|.+...++..++..+........+|.+.++.+|.++...|
T Consensus 186 l~~-~~~~~~~~~~~~-------e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yG 257 (524)
T PF05977_consen 186 LLR-WKPPPPPSSLPR-------ERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYG 257 (524)
T ss_pred HHH-ccccccccccch-------hhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHH
Confidence 333 333221111110 001223445677777788887777766666666666777889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCC
Q psy16660 406 VFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSD 484 (594)
Q Consensus 406 ~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p 484 (594)
++++..++|.++|.++.+++.+|+++++++..+.++.+++++.+++.++.|...+..++.|++ ....+..++.+++.+|
T Consensus 258 ll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P 337 (524)
T PF05977_consen 258 LLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVP 337 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999988888899988 7788888999999999
Q ss_pred CccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHH
Q psy16660 485 ADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLV 564 (594)
Q Consensus 485 ~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 564 (594)
++.+|++++++++....+..+|..+.|.+.+..|.. ..+.++++..+++.++
T Consensus 338 ~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~----------------------------~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 338 DWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVR----------------------------TALLIAGAALLLSALI 389 (524)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH----------------------------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998865 5666666666666555
Q ss_pred HHhcc
Q psy16660 565 ATFIP 569 (594)
Q Consensus 565 ~~~~~ 569 (594)
....+
T Consensus 390 ~~~~~ 394 (524)
T PF05977_consen 390 ALRFP 394 (524)
T ss_pred HHHhc
Confidence 54443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=259.27 Aligned_cols=342 Identities=15% Similarity=0.175 Sum_probs=266.8
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCch----hhHHHHHHHhhhhh
Q psy16660 103 LVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRK----LFLLITVFVTCLPI 178 (594)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr----~~l~~~~~~~~i~~ 178 (594)
....+...++.++ ..|.+|.+.++++.+..+. |++.+++.++..++++++|+++||+||| +.+.+......+..
T Consensus 10 ~~~~~~~~~~~g~-~~p~l~~~l~~~g~s~~~i-G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 87 (382)
T PRK11128 10 ALSYFGYFFAYGV-FLPFWSVWLKGQGYTPETI-GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAF 87 (382)
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHhcCCCHHHH-HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Confidence 3345555666777 8999999999998877666 9999999999999999999999999984 33333322222222
Q ss_pred hhhcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhh
Q psy16660 179 PLMTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSV 257 (594)
Q Consensus 179 ~~~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 257 (594)
.....++|.+++.|++.|++ +...+...++..++ +++|+++++.
T Consensus 88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~--------------------------------- 132 (382)
T PRK11128 88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGK--------------------------------- 132 (382)
T ss_pred HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcch---------------------------------
Confidence 22456899999999999997 55666667777765 3567777777
Q ss_pred hhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchh
Q psy16660 258 VFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEK 337 (594)
Q Consensus 258 ~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~ 337 (594)
.....++|..+||++++++.+++|||.+|++.++..++..+. .+..||+++++
T Consensus 133 --------------------------~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~ 185 (382)
T PRK11128 133 --------------------------VRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLG-QLLRPTIMPQG 185 (382)
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHccCCCCCcc
Confidence 888889999999999999999999999999887655554433 33455543221
Q ss_pred hccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy16660 338 VRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVS 417 (594)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~ 417 (594)
++++ +.++..+++++.+|+|.++...+..++..........+.+.|.++ .|.++.+.|.+.+...++.++
T Consensus 186 ~~~~---------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~ 255 (382)
T PRK11128 186 ESRQ---------QESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVL 255 (382)
T ss_pred cccc---------ccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHH
Confidence 1110 111123467788899999988887777777777778888899876 799999999999988898889
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHH
Q psy16660 418 AQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVT 496 (594)
Q Consensus 418 ~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~ 496 (594)
..++.+++.||+++++.+..+.+..+++.+.+...++.|..++..++.|++ +...+....+..+. +++++++.++..+
T Consensus 256 ~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 334 (382)
T PRK11128 256 IFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYS 334 (382)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHH
Confidence 999999999999999999999998888888888888888888888888998 77788888888876 5667799999887
Q ss_pred -HHHHHHHhHHHHHHHHHHHHhhc
Q psy16660 497 -GMRGLCNGLGPAMFGLIFYMFHV 519 (594)
Q Consensus 497 -~~~~lg~~lg~~~~g~l~~~~g~ 519 (594)
....+|..+||.++|.++|..|.
T Consensus 335 ~~~~~~g~~ig~~i~G~l~~~~g~ 358 (382)
T PRK11128 335 ALAMGGSIAIMTVLSGFLYQHLGA 358 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccH
Confidence 44567889999999999998763
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=256.14 Aligned_cols=342 Identities=23% Similarity=0.381 Sum_probs=296.8
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh-
Q psy16660 102 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL- 180 (594)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~- 180 (594)
+....+...++... ..+..|.+.++++.+..+. +++.+...++..++.++.|+++||+|||+.+..+.++..++...
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~ 81 (352)
T cd06174 4 LFLGFFLSGLDRGL-LSPALPLLAEDLGLSASQA-GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLL 81 (352)
T ss_pred HHHHHHHHHHhhhh-hHhhHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence 34455666666666 7888999999987776666 99999999999999999999999999999999998888877766
Q ss_pred -hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhh
Q psy16660 181 -MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVV 258 (594)
Q Consensus 181 -~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 258 (594)
+..+++.+++.|++.|++ +...+...+++.|++|+|+|++.+++
T Consensus 82 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 127 (352)
T cd06174 82 AFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGL---------------------------------- 127 (352)
T ss_pred HHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhH----------------------------------
Confidence 456899999999999998 66778889999999999999999999
Q ss_pred hhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhh
Q psy16660 259 FAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKV 338 (594)
Q Consensus 259 ~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~ 338 (594)
......+|..+||.+++.+.+..+|++.+++.++..++..+...+ ++
T Consensus 128 -------------------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------- 174 (352)
T cd06174 128 -------------------------FSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF-LL------- 174 (352)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HH-------
Confidence 999999999999999999999889999999998887776655433 22
Q ss_pred ccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy16660 339 RQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSA 418 (594)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~ 418 (594)
|.++...+..++..........+.+.+.++.+|.+..+.+.......++.+++
T Consensus 175 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 227 (352)
T cd06174 175 ---------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILG 227 (352)
T ss_pred ---------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 55667777777778888888889999998877999999999999999999999
Q ss_pred HHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHH
Q psy16660 419 QIILGCLMNVLGAKH-TIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVT 496 (594)
Q Consensus 419 ~~~~g~l~dr~g~~~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~ 496 (594)
.++.+++.||+++|+ .+..+..+..++.+.+...++.+..++..++.+++ +...+...+++.+..|+++|++.+|+.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (352)
T cd06174 228 ALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFN 307 (352)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHH
Confidence 999999999999999 99999999999998888888888888888888998 8888999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHh
Q psy16660 497 GMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATF 567 (594)
Q Consensus 497 ~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 567 (594)
...+++..++|.+.|.+.+..+++ ..+.+.+++.+++.+..+.
T Consensus 308 ~~~~~~~~i~~~i~g~l~~~~~~~----------------------------~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 308 TFGSLGGALGPLLAGLLLDTGGYG----------------------------GVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcc----------------------------hHHHHHHHHHHHHHHHhee
Confidence 999999999999999999865544 6787777777776665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=272.00 Aligned_cols=339 Identities=15% Similarity=0.157 Sum_probs=258.1
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHH-HHH
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFA-MIS 193 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~-~r~ 193 (594)
....+|.+.++++.+..+. +++.+.+.++..++.++.|+++||+|||++++.+.++..++.++ ++.+++.+++ .|+
T Consensus 38 ~~~~~~~i~~~~g~s~~~~-~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 116 (455)
T TIGR00892 38 VTVFFKELQQIFQATYSET-AWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGF 116 (455)
T ss_pred hhhhHHHHHHHhCcchhHH-HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4566888899998887766 99999999999999999999999999999999888777776666 5567888765 568
Q ss_pred HHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhh
Q psy16660 194 ISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERS 272 (594)
Q Consensus 194 l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~ 272 (594)
++|++ +...++..+++.++++ ++|+++.++
T Consensus 117 l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~------------------------------------------------ 147 (455)
T TIGR00892 117 ITGLGLAFNFQPSLTMLGKYFY-RRRPLANGL------------------------------------------------ 147 (455)
T ss_pred HHHhcchhhhhHHHHHHHHHHH-hhHHHHHHH------------------------------------------------
Confidence 99998 4445666778888885 788999988
Q ss_pred hhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchh--hcc--CC-CCCCC
Q psy16660 273 LAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEK--VRQ--AS-WGGAP 347 (594)
Q Consensus 273 ~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~--~~~--~~-~~~~~ 347 (594)
.+.+..+|..++|.+++++.+.+|||++|++.+++.++..+..++..++.+.++ +.+ .+ .+...
T Consensus 148 -----------~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (455)
T TIGR00892 148 -----------AMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGS 216 (455)
T ss_pred -----------HHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCc
Confidence 899999999999999999999999999999999877765554444333322110 000 00 00000
Q ss_pred Ccc-------ccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHH
Q psy16660 348 ISW-------EQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQI 420 (594)
Q Consensus 348 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~ 420 (594)
.+. ++.....++ +.+++|.++..+...++..+.......+++.|.++ +|++..+.+.+.+..+++.+++++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~ 294 (455)
T TIGR00892 217 TKKLSKKSTAEKINRFLDF-SLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARP 294 (455)
T ss_pred cccccccchhhhhhhhcch-HHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 000 000011112 35688999888888777777777777888999877 699999999999999999999999
Q ss_pred HHHHHHHhh--chHHHHHH--HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHH
Q psy16660 421 ILGCLMNVL--GAKHTIII--GLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMV 495 (594)
Q Consensus 421 ~~g~l~dr~--g~~~~l~~--~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~ 495 (594)
+.+++.||. ++++...+ +.++.+++++++...++.+.+++..++.|++ +...+...+++.+.+|++++|+++|++
T Consensus 295 ~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~ 374 (455)
T TIGR00892 295 SCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLV 374 (455)
T ss_pred HHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHH
Confidence 999999973 34433333 3343444455555566777777778888888 778888899999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhh
Q psy16660 496 TGMRGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 496 ~~~~~lg~~lg~~~~g~l~~~~g 518 (594)
+...++|++++|.++|.+.+..|
T Consensus 375 ~~~~~lg~~igp~i~G~l~~~~g 397 (455)
T TIGR00892 375 TIVECCAVLIGPPLAGRLVDATK 397 (455)
T ss_pred HHHHHHHHHccccceeeeehhcC
Confidence 99999999999999999998764
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-29 Score=270.54 Aligned_cols=374 Identities=15% Similarity=0.113 Sum_probs=256.0
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh-
Q psy16660 102 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL- 180 (594)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~- 180 (594)
.....++..+.... ..|.+|.+.++++.+..+. |++.+.+.+++.++.++.|+++||+|||+++..+.++.+++.++
T Consensus 41 ~~~~~~~~~~~~~~-~~~~~~~l~~~~gls~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~ 118 (476)
T PLN00028 41 SWISFFTCFVSTFA-AAPLLPIIRDNLNLTKSDI-GNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCM 118 (476)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 33344444444433 6888999999999887766 99999999999999999999999999999998888877777665
Q ss_pred -hcchHHHHHHHHHHHHHHhHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhh
Q psy16660 181 -MTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVF 259 (594)
Q Consensus 181 -~~~~~~~l~~~r~l~Gi~~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 259 (594)
++.+++.+++.|++.|++.+.......++.|++|+++|++++|+
T Consensus 119 ~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~----------------------------------- 163 (476)
T PLN00028 119 SLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGI----------------------------------- 163 (476)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHH-----------------------------------
Confidence 56689999999999999844445566788999999999999998
Q ss_pred hhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHH----H-----hcChHHHHHHHHHHHHHHHHHhheec
Q psy16660 260 AYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLE----K-----TYSLSLVVAVATAVAILDVFFILVAV 330 (594)
Q Consensus 260 a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~----~-----~~gw~~~f~~~~~~~ll~~~~~~~~l 330 (594)
......+|..+++.+...+. + ..|||+.|++.+++.++..++.++..
T Consensus 164 ------------------------~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 164 ------------------------AAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 66555556665555444332 2 24899999999988877665555433
Q ss_pred cCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHH
Q psy16660 331 PESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAV 410 (594)
Q Consensus 331 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~ 410 (594)
++.++.+.++.+.+ .+.++.+....+++.++++++|.+.+..++.........++.|.|+.+.+|++..+++.+.+.
T Consensus 220 ~~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~ 296 (476)
T PLN00028 220 QDLPDGNYRELKKS---GTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAAS 296 (476)
T ss_pred CcCCCCchhhHHhc---CccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHH
Confidence 33322110000000 000111122345666788888877777666666666677788999888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhchH-------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhc
Q psy16660 411 IGTLSVSAQIILGCLMNVLGAK-------HTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMH 482 (594)
Q Consensus 411 ~~i~~~~~~~~~g~l~dr~g~~-------~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~ 482 (594)
..++.++++++.|+++||+++| ....+...+.++.++++...++.+...+..++.+++ +...+...++..+.
T Consensus 297 ~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 376 (476)
T PLN00028 297 FGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFV 376 (476)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCccc
Confidence 9999999999999999999865 223333333334444444455555555555555555 44445555555555
Q ss_pred CCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHH
Q psy16660 483 SDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAAL 562 (594)
Q Consensus 483 ~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 562 (594)
. ++++|++.|+.+...++|+.++|.+. +..+ ..++...|.+.+++.+++.
T Consensus 377 ~-~~~~g~~~g~~~~~g~lg~~i~~~l~----~~~~-------------------------~~~y~~~f~~~~~~~~i~~ 426 (476)
T PLN00028 377 S-RRSLGVISGLTGAGGNVGAVLTQLLF----FTGS-------------------------SYSTETGISLMGVMIIACT 426 (476)
T ss_pred C-hhhchhhhhhhhccccHHHHHHHHHH----HhcC-------------------------CccHhhHHHHHHHHHHHHH
Confidence 4 57899999998776666666665543 3211 0124467777777777777
Q ss_pred HHHHhcc
Q psy16660 563 LVATFIP 569 (594)
Q Consensus 563 ~~~~~~~ 569 (594)
++.++.+
T Consensus 427 ~~~~~~~ 433 (476)
T PLN00028 427 LPVAFIH 433 (476)
T ss_pred HHHHhee
Confidence 7776664
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=263.42 Aligned_cols=344 Identities=14% Similarity=0.128 Sum_probs=262.9
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHH
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISI 194 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l 194 (594)
..+..|.+.++++.+..+. |++.+++.++..++.++.|+++||+|||+++..+.++.+++.++ ++.+++.+++.|++
T Consensus 14 ~~~~~~~~~~~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (379)
T TIGR00881 14 FALAMPYLVEEIGLSKTDL-GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWAL 92 (379)
T ss_pred hhhhhHHHHHHhCCCHhHH-HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5667788888888887766 99999999999999999999999999999999998888777666 55689999999999
Q ss_pred HHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhh
Q psy16660 195 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSL 273 (594)
Q Consensus 195 ~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~ 273 (594)
.|++ +...+...+++.|++|+++|++++++
T Consensus 93 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~------------------------------------------------- 123 (379)
T TIGR00881 93 NGIFQGMGWPPCGRTVTKWFSRSERGTWVSF------------------------------------------------- 123 (379)
T ss_pred HHhhccccCCchHHHHHHhcCHhhheeeEee-------------------------------------------------
Confidence 9998 66677888999999999999999998
Q ss_pred hhcccccccchhHHHhhHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCC----C--C
Q psy16660 274 AYGLSFSFSQVSATFAASMVFSP-ALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWG----G--A 346 (594)
Q Consensus 274 ~~g~~~~~~~~~~~~~~g~~igp-~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~----~--~ 346 (594)
.+....+|..++| .+++.+.+..+||+.|++.+++.++..++.++..||+++++..+.+.+ + .
T Consensus 124 ----------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T TIGR00881 124 ----------WNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDG 193 (379)
T ss_pred ----------hhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCccccccc
Confidence 8888999999999 577777777899999999888777766666667777654321111000 0 0
Q ss_pred CC--c-cccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHH
Q psy16660 347 PI--S-WEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILG 423 (594)
Q Consensus 347 ~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g 423 (594)
.. + .+........+..+++|.++.+.+..++.+........+.|.|+++.+|+++.+.+.......++.+++.++.+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 273 (379)
T TIGR00881 194 DAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAG 273 (379)
T ss_pred ccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHH
Confidence 00 0 00011122345667889999888888888888888888999999988899999999999999999999999999
Q ss_pred HHHHhhch-HHH-HHHH-HHHHHHHHHHHhh--hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHH
Q psy16660 424 CLMNVLGA-KHT-IIIG-LVFEMLQLMWYGF--GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTG 497 (594)
Q Consensus 424 ~l~dr~g~-~~~-l~~~-~~~~~i~~~~~~~--~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 497 (594)
++.||..+ ++. +... .....++...+.. ..+.+......++.|+. ....+....+..|..|+++||++.|+.+.
T Consensus 274 ~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 353 (379)
T TIGR00881 274 WLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGF 353 (379)
T ss_pred HHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 99998633 322 2221 2222222222222 22334444444455554 44455667788999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 498 MRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 498 ~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
..++|+.++|.+.|.+.|..|++
T Consensus 354 ~~~~g~~~~~~~~g~l~~~~g~~ 376 (379)
T TIGR00881 354 FAYLGGILAGLPLGYLADGFGWA 376 (379)
T ss_pred hhhhhhhhhhhhHHHHHHhhccc
Confidence 99999999999999999988765
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-28 Score=262.68 Aligned_cols=352 Identities=16% Similarity=0.153 Sum_probs=241.5
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHH-----HHHHHHHhhHhhhhhcccCchhhHHHHH
Q psy16660 97 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIK-----GFLSFLSAPLIGALSDLWGRKLFLLITV 171 (594)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~-----~l~~~l~~~~~G~lsDr~Grr~~l~~~~ 171 (594)
+....+++..+++.+.... ..+..|.+.++++.++.+..++..+.. .+...+++++.|+++||+|||++++.+.
T Consensus 15 ~~~~~~~~~~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 93 (434)
T PRK15075 15 RAILRVTSGNFLEMFDFFL-FGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTL 93 (434)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHH
Confidence 3344555566666666666 788889999999876665523333322 3333567899999999999999999999
Q ss_pred HHhhhhhhh--hcchHH--------HHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhh
Q psy16660 172 FVTCLPIPL--MTLDTW--------WFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWW 240 (594)
Q Consensus 172 ~~~~i~~~~--~~~~~~--------~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~ 240 (594)
++.+++..+ ++.+++ .++++|+++|++ +...+....++.|++|+++|+++.++
T Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~---------------- 157 (434)
T PRK15075 94 SIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSW---------------- 157 (434)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHH----------------
Confidence 888887666 455665 468899999998 66677788999999999999999998
Q ss_pred HHHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHH--------HhcChHHHH
Q psy16660 241 FFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLE--------KTYSLSLVV 312 (594)
Q Consensus 241 ~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~--------~~~gw~~~f 312 (594)
.+....+|..+|+.+++.+. +.+|||++|
T Consensus 158 -------------------------------------------~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f 194 (434)
T PRK15075 158 -------------------------------------------QSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPF 194 (434)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHH
Confidence 77777788887777777653 467999999
Q ss_pred HHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHH-HHHHHHHHHhhhhHHHHHHH
Q psy16660 313 AVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILML-CVTVFLSYLPEAGQYSCLFV 391 (594)
Q Consensus 313 ~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 391 (594)
++..+...+ ........||+++...++.+ .+..+.++...+++..+.. +...++..........+.|.
T Consensus 195 ~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 263 (434)
T PRK15075 195 LIGCLIVPF-IFLIRRSLEETEEFLARKHR----------PSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPT 263 (434)
T ss_pred HHHHHHHHH-HHHHHHhcCCCHHHHHhhhc----------cccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 986543322 22222234443221111100 0111123333345444433 23333344455667778999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH-HHh---hhhhHHHHHHHHHHHHH
Q psy16660 392 YLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLM-WYG---FGSQMWMMWAAGILASL 467 (594)
Q Consensus 392 ~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~-~~~---~~~~~~~~~~~~~l~g~ 467 (594)
|+++.+|++..+.++......++.+++.++.|++.||+++|+.+..+..+..+..+ .+. ..++........++.++
T Consensus 264 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (434)
T PRK15075 264 FGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSF 343 (434)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 99988899999999988889999999999999999999999988776544432221 111 12222223333344445
Q ss_pred h-hchHhHHHHHHhhcCCCccchHHHHHHHHHHH-HHHhHHHHHHHHHHHHhhc
Q psy16660 468 A-SITYPAISALVSMHSDADRQGLVQGMVTGMRG-LCNGLGPAMFGLIFYMFHV 519 (594)
Q Consensus 468 ~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-lg~~lg~~~~g~l~~~~g~ 519 (594)
+ +...+....+..|..|++.||++.|+.+.... +++.++|.+.|.+.|..|.
T Consensus 344 ~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 344 LYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 5 55566667888999999999999999655555 4688899999999998774
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=262.34 Aligned_cols=331 Identities=15% Similarity=0.136 Sum_probs=255.1
Q ss_pred hhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh-----hcchHHHHHH
Q psy16660 116 LTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL-----MTLDTWWFFA 190 (594)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~-----~~~~~~~l~~ 190 (594)
...+.+|.+.++++.++.+. |+..+.+.+++.+++++.|+++||+|||+++..+.++.+++.++ .+.+++.+++
T Consensus 44 ~~~~~~p~i~~~~~~s~~~~-gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~ 122 (438)
T PRK10133 44 LNDILLPQFQQAFTLTNFQA-GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV 122 (438)
T ss_pred HHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 36888999999999887666 99999999999999999999999999999999999888888755 3568999999
Q ss_pred HHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhh
Q psy16660 191 MISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEH 269 (594)
Q Consensus 191 ~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~ 269 (594)
+|+++|+| +...+....++.|..++++|.+.+++
T Consensus 123 ~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~--------------------------------------------- 157 (438)
T PRK10133 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNL--------------------------------------------- 157 (438)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHH---------------------------------------------
Confidence 99999998 66777888888888777777667777
Q ss_pred hhhhhhcccccccchhHHHhhHHHHHHHHHHHHHH------------------h--------cChHHHHHHHH-HHHHHH
Q psy16660 270 ERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEK------------------T--------YSLSLVVAVAT-AVAILD 322 (594)
Q Consensus 270 ~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~------------------~--------~gw~~~f~~~~-~~~ll~ 322 (594)
.+....+|..+||.+++.+.. . .+||++|+... +..++.
T Consensus 158 --------------~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~ 223 (438)
T PRK10133 158 --------------AQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVA 223 (438)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999988875430 0 25677776433 333333
Q ss_pred HHHhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHH-HHHhCCCh
Q psy16660 323 VFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYL-KLVMGFDE 401 (594)
Q Consensus 323 ~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~ 401 (594)
.++....+||.++++.++ .+..+..+++++++++|.++...+..++....+.....+.+.|+ ++.+|.++
T Consensus 224 ~~~~~~~~p~~~~~~~~~---------~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~ 294 (438)
T PRK10133 224 LLIMLTKFPALQSDNHSD---------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA 294 (438)
T ss_pred HHHHHhcCCCCCcccccc---------ccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCH
Confidence 333333345432211100 00112234456777899888777777777777777778888885 56789999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHh
Q psy16660 402 VHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVS 480 (594)
Q Consensus 402 ~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~ 480 (594)
.+.++.+....++.++++++.+++.||+++|+++..+..+.++++++..+.++.+ .+....+.|++ +..+|..++...
T Consensus 295 ~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~P~~~s~a~ 373 (438)
T PRK10133 295 GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQYPTIFSLGI 373 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888877776666655544432 34566778888 899999999999
Q ss_pred hcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy16660 481 MHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 481 ~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g 518 (594)
+..|+ +.+++.++.. +..+|+.++|.+.|.+.|..|
T Consensus 374 ~~~~~-~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g 409 (438)
T PRK10133 374 KNLGQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_pred cccch-hhccchhHHh-HHhccchHHHHHHHHHHHhcc
Confidence 98865 5678888875 455789999999999999866
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=259.17 Aligned_cols=366 Identities=11% Similarity=0.128 Sum_probs=268.8
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhHHHHHHh-hCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhh
Q psy16660 97 PSVYHALVVIFLEFFAWGLLTMPIISVLNR-TFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 175 (594)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~ 175 (594)
+.++...+..++.+..|.+ ..|+.+.+.+ +++.+..+. +++.+++.+++.++.++.|+++||+|.|+++.++.++..
T Consensus 34 r~l~~s~~~f~~~F~~w~~-~~~l~~~~~~~~~~ls~~q~-g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWML-FSAVTVNLNKIGFNFTTDQL-FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 4556666666777777777 7888888766 788887776 999999999999999999999999999999999888877
Q ss_pred hhhhhh--c-----chHHHHHHHHHHHHHHhHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhc
Q psy16660 176 LPIPLM--T-----LDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISIS 248 (594)
Q Consensus 176 i~~~~~--~-----~~~~~l~~~r~l~Gi~~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (594)
+..++. + .+++.+++.|++.|++++.++.....+++++|+++||+++|+
T Consensus 112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi------------------------ 167 (462)
T PRK15034 112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGI------------------------ 167 (462)
T ss_pred HHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHH------------------------
Confidence 776663 3 689999999999999977889999999999999999999999
Q ss_pred cccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHH-----HHH-------------hcChHH
Q psy16660 249 GVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAY-----LEK-------------TYSLSL 310 (594)
Q Consensus 249 g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~-----l~~-------------~~gw~~ 310 (594)
.....++|..+++++... +.+ ..+||.
T Consensus 168 -----------------------------------~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~ 212 (462)
T PRK15034 168 -----------------------------------NGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLAN 212 (462)
T ss_pred -----------------------------------HHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHH
Confidence 644444455444433322 212 334788
Q ss_pred HHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHH
Q psy16660 311 VVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLF 390 (594)
Q Consensus 311 ~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (594)
+.++..++.++..++.++.+++.+.. +...++.+..+|+|..|.+++.+++.+..+.+...++|
T Consensus 213 ~~~~~~~~~iv~~i~~~~~~~~~~~~----------------~~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp 276 (462)
T PRK15034 213 AAWIWVPLLAIATIAAWSGMNDIASS----------------RASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFA 276 (462)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccc----------------ccCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777666666655553221 11235566788999999999999999999988988999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHh-hh-----hhHHHHHHHHHH
Q psy16660 391 VYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYG-FG-----SQMWMMWAAGIL 464 (594)
Q Consensus 391 ~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~-~~-----~~~~~~~~~~~l 464 (594)
.|.++.+ +............+...+.++++|+++||+|+++++.++.+.+.++..... .. .+.+...+..+.
T Consensus 277 ~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~ 354 (462)
T PRK15034 277 MLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMG 354 (462)
T ss_pred HHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 9998865 333333333445567778899999999999999999988876666553321 11 234444444433
Q ss_pred HHHh-hchHhHHHHHHhhcCCC---------------------ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCC
Q psy16660 465 ASLA-SITYPAISALVSMHSDA---------------------DRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLS 522 (594)
Q Consensus 465 ~g~~-~~~~~~~~~~~~~~~p~---------------------~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~ 522 (594)
..+. +......+.++.+.+|+ ++.|.+.|+....+.+|+++.|.++|...+..|..
T Consensus 355 l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~-- 432 (462)
T PRK15034 355 LFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSP-- 432 (462)
T ss_pred HHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCc--
Confidence 3343 55555666666666653 26789999999999999999999999999887642
Q ss_pred CCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhc
Q psy16660 523 DGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFI 568 (594)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 568 (594)
...|....+..++++++.++.
T Consensus 433 -------------------------~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 433 -------------------------VGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666655544
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=254.63 Aligned_cols=368 Identities=15% Similarity=0.184 Sum_probs=258.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHH-hhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHH-HHHHHhhh
Q psy16660 99 VYHALVVIFLEFFAWGLLTMPIISVLN-RTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLL-ITVFVTCL 176 (594)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~-~~~~~~~i 176 (594)
....++..++..++.+. ..|.+|.+. ++++.+..+. |++.+...+...+.+++.|.++||+||||.++ .+.+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~-~~p~~~~~l~~~~~~s~~~~-g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~ 94 (393)
T PRK15011 17 STAFLIVAFLTGIAGAL-QTPTLSIFLTDEVHARPAMV-GFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVL 94 (393)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 35556678888888777 789999875 5567666655 99987766655555555555599999998754 44454444
Q ss_pred hhhh--hcchHHHHHHHH-HHHHHHhHHHHHHHHHhhccccccccc--chhchhHHHHHHHHhhhhhhhHHHHhhhcccc
Q psy16660 177 PIPL--MTLDTWWFFAMI-SISGVFAVTFSVVFAYVADVTEEHERS--LAYGLKFIALKIILMTLDTWWFFAMISISGVF 251 (594)
Q Consensus 177 ~~~~--~~~~~~~l~~~r-~l~Gi~~~~~~~~~a~i~~~~~~~~r~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 251 (594)
+..+ ++.+++.+++.+ ++.|.++...+...+++.++.++++|. ...++
T Consensus 95 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 147 (393)
T PRK15011 95 ACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSF--------------------------- 147 (393)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHH---------------------------
Confidence 4443 556788776555 444555666677788888877665553 33355
Q ss_pred chhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheecc
Q psy16660 252 AVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVP 331 (594)
Q Consensus 252 ~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~ 331 (594)
.+.+.++|.++||++++++.+++|||..|++.++..++..++.++.+|
T Consensus 148 --------------------------------~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 148 --------------------------------LRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred --------------------------------HHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcC
Confidence 788899999999999999999899999999998887777766666788
Q ss_pred CCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHH
Q psy16660 332 ESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVI 411 (594)
Q Consensus 332 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~ 411 (594)
|.++++++..+ +. +..++ +++..+.......+.+........+.|.|+++.+|+++.+.+.+....
T Consensus 196 ~~~~~~~~~~~--------~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~ 261 (393)
T PRK15011 196 SMRKELPLATG--------TL----EAPRR--NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTA 261 (393)
T ss_pred ccCCCCccccc--------cc----ccccc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 76433221100 00 00111 112223333333444444455556788899888899999999988887
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchH
Q psy16660 412 GTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGL 490 (594)
Q Consensus 412 ~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~ 490 (594)
.++.+++.++.|++.||+++|+.+..+.....+.+..+...++.+...+..++.+++ +...+....+.+|..|+ ++|+
T Consensus 262 ~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~ 340 (393)
T PRK15011 262 AGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGS 340 (393)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-Ccch
Confidence 788889999999999999999988777666555554444455555555555555555 55555566777888864 6999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhccC
Q psy16660 491 VQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIPE 570 (594)
Q Consensus 491 ~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 570 (594)
++++++...++|..++|.+.|.+.|..|+. ..|.++.++.+++++..+..++
T Consensus 341 ~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~----------------------------~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 341 ATTLYTNTSRVGWIIAGSLAGIVAEIWNYH----------------------------AVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----------------------------HHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999987755 6777777777777777766653
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-28 Score=256.20 Aligned_cols=328 Identities=16% Similarity=0.197 Sum_probs=249.6
Q ss_pred HhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHH
Q psy16660 112 AWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFF 189 (594)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~ 189 (594)
+.++ ..|.+|.+.++++.++.+. |++.+++.++..++.++.|+++||+|||+++..+.++.+++... +..+++.++
T Consensus 6 ~~~~-~~p~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (377)
T PRK11102 6 AIDM-YLPALPVIAADFGVSAGSV-QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLI 83 (377)
T ss_pred HHHH-HhccHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 3344 7899999999998877666 99999999999999999999999999999999998887777666 456899999
Q ss_pred HHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhh
Q psy16660 190 AMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEE 268 (594)
Q Consensus 190 ~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~ 268 (594)
+.|++.|++ +...+...+++.|++|+++|++++++
T Consensus 84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 119 (377)
T PRK11102 84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSF-------------------------------------------- 119 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH--------------------------------------------
Confidence 999999998 55667788999999999999999998
Q ss_pred hhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCC
Q psy16660 269 HERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPI 348 (594)
Q Consensus 269 ~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~ 348 (594)
......+|..++|.+++.+.+..+||+.|++.+++.++..++..+.+||+++++++++
T Consensus 120 ---------------~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 177 (377)
T PRK11102 120 ---------------VTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPKERRQP------- 177 (377)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCC-------
Confidence 8888999999999999999998999999999888877776666666777643322110
Q ss_pred ccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16660 349 SWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNV 428 (594)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr 428 (594)
.+.++..+++++.+++|.++..++..++..........+.|.+..+.+|+++.+.|.+.....++.+++.++.+++.||
T Consensus 178 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r 256 (377)
T PRK11102 178 -FHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR 256 (377)
T ss_pred -CChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112233456677788888877776666665555666666777778789999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHHHHHHh---h-hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHH-HH
Q psy16660 429 LGAKHTIIIGLVFEMLQLMWYG---F-GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRG-LC 502 (594)
Q Consensus 429 ~g~~~~l~~~~~~~~i~~~~~~---~-~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-lg 502 (594)
+|+|+.+..+..+..+..+.+. . ..+.+...+...+.+.+ +...+.....+.+..| +++|++.++.+.... +|
T Consensus 257 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g 335 (377)
T PRK11102 257 VGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIG 335 (377)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHH
Confidence 9999998888765443322221 1 12334444444444433 4445555566677665 789999998776644 44
Q ss_pred HhHHHHH
Q psy16660 503 NGLGPAM 509 (594)
Q Consensus 503 ~~lg~~~ 509 (594)
..+++.+
T Consensus 336 ~~~g~~~ 342 (377)
T PRK11102 336 AIVGALL 342 (377)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=260.81 Aligned_cols=336 Identities=16% Similarity=0.171 Sum_probs=254.1
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHH
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISI 194 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l 194 (594)
..+..|.+.++++.+..+. |++.++..++..++.++.|+++||+|||+.+..+.++.+++.++ +..+++.+++.|++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (398)
T TIGR00895 36 MGFAAPAISAEWGLDPVQL-GFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFL 114 (398)
T ss_pred HHhhHHHHhhccCCCHHHH-HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 5677888888888776655 99999999999999999999999999999999988777776655 55689999999999
Q ss_pred HHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhh
Q psy16660 195 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSL 273 (594)
Q Consensus 195 ~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~ 273 (594)
.|++ +...+...+++.|++|+++|++++++
T Consensus 115 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~------------------------------------------------- 145 (398)
T TIGR00895 115 AGLGLGGLMPNLNALVSEYAPKRFRGTAVGL------------------------------------------------- 145 (398)
T ss_pred HhcccccchhhHHHHHHHHcCHHhhchhHhh-------------------------------------------------
Confidence 9998 66788889999999999999999999
Q ss_pred hhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCC-----------
Q psy16660 274 AYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQAS----------- 342 (594)
Q Consensus 274 ~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~----------- 342 (594)
......+|..+|+.+++++.+..||++.+++.+++.++..++.+..+||+++...++.+
T Consensus 146 ----------~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (398)
T TIGR00895 146 ----------MFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIA 215 (398)
T ss_pred ----------HhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999999989999999988766666666666667876532111100
Q ss_pred -----CCC--CCCccccCCchhh-Hhhhcc---chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHH
Q psy16660 343 -----WGG--APISWEQADPFAS-LRKVGK---DQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVI 411 (594)
Q Consensus 343 -----~~~--~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~ 411 (594)
..+ ...+.+..+..++ .+..++ .+..+.+.+..++..........+.| ++.+.+|.++.+.+......
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~ 294 (398)
T TIGR00895 216 PQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALF 294 (398)
T ss_pred HhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHH
Confidence 000 0000000011111 222222 23334444444455555556666777 44455799999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchH
Q psy16660 412 GTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGL 490 (594)
Q Consensus 412 ~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~ 490 (594)
.++.+++.++.+++.||+++|+.+...........++.....+.+..+...++.|++ +...+...+++.+.+|+++||+
T Consensus 295 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 374 (398)
T TIGR00895 295 NFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRAT 374 (398)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 999999999999999999998544444433333333333345666667777788888 7788899999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q psy16660 491 VQGMVTGMRGLCNGLGPAMFGLI 513 (594)
Q Consensus 491 ~~g~~~~~~~lg~~lg~~~~g~l 513 (594)
+.|+.+...++|..++|.+.|.+
T Consensus 375 ~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 375 GVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhc
Confidence 99999999999999999999875
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=255.68 Aligned_cols=337 Identities=14% Similarity=0.100 Sum_probs=258.2
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--
Q psy16660 103 LVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL-- 180 (594)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~-- 180 (594)
.+..++..++.+. +.|.+|.+.++++.++.+. |++.+++.++..++.+++|+++||+|||+.+..+.++..++.++
T Consensus 12 ~~~~~~~~~~~~~-~~p~~~~i~~~~~~s~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 89 (401)
T PRK11043 12 AGLSMLGFLATDM-YLPAFKAIQADLQTSASAV-SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGML 89 (401)
T ss_pred HHHHHHHHHHHHH-HHhhHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHH
Confidence 3344555566565 8899999999998877766 99999999999999999999999999999999988777776655
Q ss_pred hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhh
Q psy16660 181 MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVF 259 (594)
Q Consensus 181 ~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 259 (594)
++.+++.+++.|+++|++ +...+...+++.|+++++++++..+.
T Consensus 90 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 134 (401)
T PRK11043 90 WVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFAT----------------------------------- 134 (401)
T ss_pred HhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHH-----------------------------------
Confidence 556899999999999998 55556667889999998888888777
Q ss_pred hhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhc
Q psy16660 260 AYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVR 339 (594)
Q Consensus 260 a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~ 339 (594)
......++..++|.+++++.++.|||+.|++.++..++..+..++ ++|+++++++
T Consensus 135 ------------------------~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 189 (401)
T PRK11043 135 ------------------------IMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR-LKPSKKARKQ 189 (401)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH-cCCCCCcccc
Confidence 777888999999999999999899999999988777776555443 4443321110
Q ss_pred cCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q psy16660 340 QASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQ 419 (594)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~ 419 (594)
++...++++.+++|.++...+...+..........+.|.|.++ +|+++.+.|+......++.+++.
T Consensus 190 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~ 255 (401)
T PRK11043 190 -------------SQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGG 255 (401)
T ss_pred -------------chHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH
Confidence 0122456677788887765555555555555666778888766 69999999998888888889999
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHH---Hhh--hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHH
Q psy16660 420 IILGCLMNVLGAKHTIIIGLVFEMLQLMW---YGF--GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQG 493 (594)
Q Consensus 420 ~~~g~l~dr~g~~~~l~~~~~~~~i~~~~---~~~--~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g 493 (594)
++.+++.||+++++..........++.+. ... .++.+.......+.+++ +..++...+...+..| +++|++.|
T Consensus 256 ~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g 334 (401)
T PRK11043 256 YGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAA 334 (401)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHH
Confidence 99999999999988766554444443322 222 23444445555666777 7778888777777775 57999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q psy16660 494 MVTGMRGLCNGLGPAMFGLIFYM 516 (594)
Q Consensus 494 ~~~~~~~lg~~lg~~~~g~l~~~ 516 (594)
+.+.....+...++.+.|.+.+.
T Consensus 335 ~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 335 LQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999988763
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-28 Score=267.26 Aligned_cols=361 Identities=17% Similarity=0.215 Sum_probs=255.9
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhh
Q psy16660 98 SVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLP 177 (594)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~ 177 (594)
.+..+.+..++..+.... ..+.+|.+.++++.+..+. +++.+.+.++..++.++.|+++||+|||+.++.+.++.+++
T Consensus 21 ~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 98 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVL-ITLVLTEVQGEFGLTTVQA-ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVG 98 (496)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 444555666666666666 7888899999998887766 99999999999999999999999999999999988887777
Q ss_pred hhh--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchh
Q psy16660 178 IPL--MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVT 254 (594)
Q Consensus 178 ~~~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 254 (594)
.++ ++.+++.+++.|++.|++ ++..+...+++.|.+|+++|++++++
T Consensus 99 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~------------------------------ 148 (496)
T PRK03893 99 TLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGF------------------------------ 148 (496)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH------------------------------
Confidence 666 556899999999999998 66778889999999999999999998
Q ss_pred hhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCC
Q psy16660 255 FSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESL 334 (594)
Q Consensus 255 ~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~ 334 (594)
......+|..++|.+++++.+.++||+.|++..+..++ .++....+||++
T Consensus 149 -----------------------------~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~-~~~~~~~~p~~~ 198 (496)
T PRK03893 149 -----------------------------LISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIF-ALWLRKNLPEAE 198 (496)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhCCCch
Confidence 88889999999999999999999999999876544333 223333466654
Q ss_pred chhhccCCCCCCCCcc----ccCCchhhH--------------hhh---------------------------ccchhHH
Q psy16660 335 PEKVRQASWGGAPISW----EQADPFASL--------------RKV---------------------------GKDQTIL 369 (594)
Q Consensus 335 ~~~~~~~~~~~~~~~~----~~~~~~~~~--------------~~~---------------------------~~~~~~~ 369 (594)
+.++++++....+... ..+...... ... .+.+...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (496)
T PRK03893 199 DWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGV 278 (496)
T ss_pred hhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 3222111100000000 000000000 000 0000000
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q psy16660 370 MLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWY 449 (594)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~ 449 (594)
......+...........++|.|+++.+|++..+.+.+.+...++.+++.++.|++.||+++|+.+..+..+..+..+++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 358 (496)
T PRK03893 279 MLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPV 358 (496)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 00011111111111345678999987789999999999999999999999999999999999998888776666555443
Q ss_pred hhh--hhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 450 GFG--SQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 450 ~~~--~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
... .+.+......++.+.. ....+...+++++.+|+++||+++|+.+....+|+.++|.+.|.+.|..|+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~ 432 (496)
T PRK03893 359 FAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLG 432 (496)
T ss_pred hhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChH
Confidence 332 2233333333333332 3344566778899999999999999999999999999999999999987654
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-29 Score=267.98 Aligned_cols=342 Identities=17% Similarity=0.126 Sum_probs=240.1
Q ss_pred hhhHHHHHHhhCCCc--------hhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhhh---c--c
Q psy16660 117 TMPIISVLNRTFPDH--------TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLM---T--L 183 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~--------~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~~---~--~ 183 (594)
..+.++....+++.+ ..+. |++.+++.++..++.+++|+++||+|||++++++.++..++..+. . .
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 125 (481)
T TIGR00879 47 IGGALALPAFEFKFTSANSDSYSSSLW-GLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFAL 125 (481)
T ss_pred hhhhhhcHHHHHhcCCcccCCCChhHH-HHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 566666666665544 4444 999999999999999999999999999999999888777776653 2 2
Q ss_pred hHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhh
Q psy16660 184 DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYV 262 (594)
Q Consensus 184 ~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i 262 (594)
+++.+++.|+++|++ +...+...+++.|++|+++|++++++
T Consensus 126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-------------------------------------- 167 (481)
T TIGR00879 126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSL-------------------------------------- 167 (481)
T ss_pred chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhH--------------------------------------
Confidence 566899999999998 66777889999999999999999999
Q ss_pred ccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHH---HHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhc
Q psy16660 263 ADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALG---AYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVR 339 (594)
Q Consensus 263 ~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~---~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~ 339 (594)
.+....+|..+++.++ ..+.+..+||++|++.++..++.. +..+++||+++....
T Consensus 168 ---------------------~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~-~~~~~l~~~~~~~~~ 225 (481)
T TIGR00879 168 ---------------------YQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF-LGLFFLPESPRWLVG 225 (481)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHH-HHHhcCCCChHHHHH
Confidence 9999999999999998 666567899999999766655544 344557887532111
Q ss_pred cCCCCC-----------CCCccc--c----------------CCchhhHhhhcc---chhHHHHHHHHHHHHHhhhhHHH
Q psy16660 340 QASWGG-----------APISWE--Q----------------ADPFASLRKVGK---DQTILMLCVTVFLSYLPEAGQYS 387 (594)
Q Consensus 340 ~~~~~~-----------~~~~~~--~----------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 387 (594)
+++.++ ...+.. + ......+....+ .+.++..++..+...........
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (481)
T TIGR00879 226 KGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMY 305 (481)
T ss_pred cCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHH
Confidence 100000 000000 0 000011111111 12222223333332222333444
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhh-----hhh-----HHH
Q psy16660 388 CLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGF-----GSQ-----MWM 457 (594)
Q Consensus 388 ~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~-----~~~-----~~~ 457 (594)
+.|.+.+ .+|++..+.+.......++.+++.++.+++.||+++|+.+..+.++.+++++++.. .++ .+.
T Consensus 306 ~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (481)
T TIGR00879 306 YSPTIFE-NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNV 384 (481)
T ss_pred HHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHH
Confidence 5555554 46999988899999999999999999999999999999999888887777766652 111 222
Q ss_pred HHHHHHHHHHh--hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 458 MWAAGILASLA--SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 458 ~~~~~~l~g~~--~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
......+++.+ ....+....+..|..|+++|++++|+.+...++|++++|.+.+.+.+..|+.
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~ 449 (481)
T TIGR00879 385 AIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVG 449 (481)
T ss_pred HHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 22222332222 3344666777899999999999999999999999999999999999876654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-29 Score=252.29 Aligned_cols=372 Identities=14% Similarity=0.218 Sum_probs=303.2
Q ss_pred CCchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhh
Q psy16660 96 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 175 (594)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~ 175 (594)
++.+++-.....+++..|.+ ..|+.+.+.++++.++.|. +++.++..+...+..++.|.+.||+|.|++..++.++..
T Consensus 13 ~~~L~~S~~af~v~F~VW~l-~s~l~~~i~~~~~LS~~q~-~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~ 90 (417)
T COG2223 13 RRNLWLSTLAFDVGFMVWTL-FSPLGVFIKSDFGLSEGQK-GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLL 90 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHhhhccccCCCHHHH-HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHH
Confidence 44555556666667777777 7888888889999888877 999999999999999999999999999999999988888
Q ss_pred hhhhh--hcc---hHHHHHHHHHHHHHHhHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccc
Q psy16660 176 LPIPL--MTL---DTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGV 250 (594)
Q Consensus 176 i~~~~--~~~---~~~~l~~~r~l~Gi~~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 250 (594)
+.++. ++. ++|++++.+++.|++++.+++....+++++|||++|.++|+
T Consensus 91 IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI-------------------------- 144 (417)
T COG2223 91 IPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGI-------------------------- 144 (417)
T ss_pred HHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHH--------------------------
Confidence 87766 332 66799999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHHHHhh
Q psy16660 251 FAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYS---LSLVVAVATAVAILDVFFIL 327 (594)
Q Consensus 251 ~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~g---w~~~f~~~~~~~ll~~~~~~ 327 (594)
.+ ..++|..+..+++..+....+ |+.+..+..+..++..++.+
T Consensus 145 ---------------------------------~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~ 190 (417)
T COG2223 145 ---------------------------------AG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAW 190 (417)
T ss_pred ---------------------------------hc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 667777777777777777778 99999999888888888888
Q ss_pred eeccCCCchhhccCCCCCCCCccccCCch-hhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHH
Q psy16660 328 VAVPESLPEKVRQASWGGAPISWEQADPF-ASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAV 406 (594)
Q Consensus 328 ~~l~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 406 (594)
+.+.+.++.+...+ +.. .+++.+.+++..|.+++.++..+..+.++..++|.|++++||.++.++|.
T Consensus 191 ~~~~d~p~~r~~~~------------~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~ 258 (417)
T COG2223 191 LGMNDVPEHRASVK------------PQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGL 258 (417)
T ss_pred HHhCCChhhhcccc------------ccchhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHH
Confidence 87877665422221 111 55777888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHHHh-hchHhHHHHH
Q psy16660 407 FIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGS-------QMWMMWAAGILASLA-SITYPAISAL 478 (594)
Q Consensus 407 ~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~l~g~~-~~~~~~~~~~ 478 (594)
+.....+...+.++++|+++||+|.+|.+......++++..+..... +.+......+..++. +......+.+
T Consensus 259 ~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~ 338 (417)
T COG2223 259 IAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKM 338 (417)
T ss_pred HHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheee
Confidence 99999999999999999999999999999999888888887776643 334444434444444 5556666667
Q ss_pred HhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHH
Q psy16660 479 VSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLV 558 (594)
Q Consensus 479 ~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 558 (594)
+...+| ++.|.+.|+...++.+|++.-|...|..++..|.. ...|.+...+.
T Consensus 339 Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~---------------------------~~~f~~~~~~~ 390 (417)
T COG2223 339 IPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSY---------------------------TGAFMLLLAFY 390 (417)
T ss_pred chHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccH---------------------------HHHHHHHHHHH
Confidence 777774 47899999999999999999999999999988722 25677776666
Q ss_pred HHHHHHHHhcc
Q psy16660 559 IAALLVATFIP 569 (594)
Q Consensus 559 ~~~~~~~~~~~ 569 (594)
+++.+..+...
T Consensus 391 ~~a~v~~~~~y 401 (417)
T COG2223 391 LVALVLTWALY 401 (417)
T ss_pred HHHHHHHHHHH
Confidence 66666555443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-28 Score=255.65 Aligned_cols=340 Identities=15% Similarity=0.160 Sum_probs=259.4
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh-
Q psy16660 102 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL- 180 (594)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~- 180 (594)
.....++..+.... ..|.+|.+.++++.+..+. +++.+++.++..++.+++|+++||+|||+++..+.++..++.+.
T Consensus 13 ~~~~~~~~~~~~~~-~~p~~~~i~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~ 90 (394)
T PRK11652 13 LVLLVAVGQMAQTI-YVPAIADMARDLNVREGAV-QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVA 90 (394)
T ss_pred HHHHHHHHHHHHHH-HhccHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 33344444555455 7889999999999887766 99999999999999999999999999999999888777777665
Q ss_pred -hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhh
Q psy16660 181 -MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVV 258 (594)
Q Consensus 181 -~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 258 (594)
++.+++.+++.|++.|++ +...+....+..|.+++++|+++.++
T Consensus 91 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 136 (394)
T PRK11652 91 LFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSL---------------------------------- 136 (394)
T ss_pred HHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHH----------------------------------
Confidence 556899999999999998 55556667788888888888888887
Q ss_pred hhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhh
Q psy16660 259 FAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKV 338 (594)
Q Consensus 259 ~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~ 338 (594)
.+.+..++..+||.+++++.+..|||+.|++.++..++..++..+.+||+++.++
T Consensus 137 -------------------------~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (394)
T PRK11652 137 -------------------------LNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPADA 191 (394)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCcccc
Confidence 8888899999999999999988899999999887766655555555777643221
Q ss_pred ccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy16660 339 RQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSA 418 (594)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~ 418 (594)
++ .+..++++..+++|.++...+..+.............+.++++.+|.++.+.+++.....++.+++
T Consensus 192 ~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g 259 (394)
T PRK11652 192 RR------------TRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFG 259 (394)
T ss_pred ch------------hHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 11 113456677788888887666655555555555666778888888999999999998888888899
Q ss_pred HHHHHHHHHhhchHHHHHHHH-HHHHHHHHHHhh--hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHH
Q psy16660 419 QIILGCLMNVLGAKHTIIIGL-VFEMLQLMWYGF--GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGM 494 (594)
Q Consensus 419 ~~~~g~l~dr~g~~~~l~~~~-~~~~i~~~~~~~--~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~ 494 (594)
..+.+++.||.+++....... .+..+....... ..+.+......++.+++ +...|...+...+..| +++|++.++
T Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~ 338 (394)
T PRK11652 260 AWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGAL 338 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHH
Confidence 999999999998433332222 222222222221 23456666677778888 7788999998888886 578999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q psy16660 495 VTGMRGLCNGLGPAMFGLIFY 515 (594)
Q Consensus 495 ~~~~~~lg~~lg~~~~g~l~~ 515 (594)
.+....+|..+++.+.+.+.+
T Consensus 339 ~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 339 LGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 999999999999998887653
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-27 Score=259.10 Aligned_cols=377 Identities=17% Similarity=0.155 Sum_probs=277.1
Q ss_pred cCCchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhccc-----Cchhh-HH
Q psy16660 95 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW-----GRKLF-LL 168 (594)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~-----Grr~~-l~ 168 (594)
++++...++...+...+..+. ..+.+|.+.++.+.+..+. |.. +...... ++.+++|+++||+ ||||. ++
T Consensus 10 ~~~~~~~~~~l~~~~gl~~~~-~~~~l~~~l~~~g~~~~~i-g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll 85 (491)
T PRK11010 10 QQPNSAILLILGFASGLPLAL-TSGTLQAWMTVENIDLKTI-GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLL 85 (491)
T ss_pred cccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCHHHH-HHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHH
Confidence 344556666666777777676 8899999999887776555 775 3333333 5889999999999 99886 55
Q ss_pred HHHHHhhhhhhh--hc---chHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHH
Q psy16660 169 ITVFVTCLPIPL--MT---LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFF 242 (594)
Q Consensus 169 ~~~~~~~i~~~~--~~---~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 242 (594)
.+.++.+++..+ +. .+++++.+.+++.|++ +...++..+++.|++|+++|+++.++
T Consensus 86 ~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i------------------ 147 (491)
T PRK11010 86 ATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAI------------------ 147 (491)
T ss_pred HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHH------------------
Confidence 666666555443 22 3788899999999997 55666778999999999999999999
Q ss_pred HHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHH-hcChHHHHHHHHHHHHH
Q psy16660 243 AMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEK-TYSLSLVVAVATAVAIL 321 (594)
Q Consensus 243 ~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~-~~gw~~~f~~~~~~~ll 321 (594)
...+..+|.++++.+++++.+ ..|||.+|++.+++.++
T Consensus 148 -----------------------------------------~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll 186 (491)
T PRK11010 148 -----------------------------------------SVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIP 186 (491)
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence 899999999999999999988 57999999999887777
Q ss_pred HHHHhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCh
Q psy16660 322 DVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDE 401 (594)
Q Consensus 322 ~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 401 (594)
..+..+ .+||+++.+++++ + .++....++++.++++..+...+..++..........+.+.|+.+.+|++.
T Consensus 187 ~~l~~~-~~~e~~~~~~~~~-------~-~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~ 257 (491)
T PRK11010 187 CIIATL-LAPEPTDTIPVPK-------T-LEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDA 257 (491)
T ss_pred HHHHHH-hcCCCcccccccc-------c-hhhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 655444 4777643211100 0 011123456667777777766666666666666666778888877789999
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH---hhh-hhHHHHHHHHHHHHHh-hchHhHH
Q psy16660 402 VHVAVFIA-VIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWY---GFG-SQMWMMWAAGILASLA-SITYPAI 475 (594)
Q Consensus 402 ~~~g~~~~-~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~---~~~-~~~~~~~~~~~l~g~~-~~~~~~~ 475 (594)
.+.+.... ...++.+++.++.|++.||+++|+.+.++.++.++..+++ ... ++.+.+....++..+. +...+..
T Consensus 258 ~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~ 337 (491)
T PRK11010 258 GEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAF 337 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999875 5557888999999999999999887776655544433322 222 3344444444444444 5555667
Q ss_pred HHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHH
Q psy16660 476 SALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGA 555 (594)
Q Consensus 476 ~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 555 (594)
.++..+..+++..++.+|+.+...++|..+++.+.|.+.|..|+. ..|.+.+
T Consensus 338 ~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~----------------------------~~f~~~~ 389 (491)
T PRK11010 338 VALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWP----------------------------TFYLFSV 389 (491)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH----------------------------HHHHHHH
Confidence 788888899999999999999999999999999999999987765 6788888
Q ss_pred HHHHHHHHHHHhccCc
Q psy16660 556 LLVIAALLVATFIPES 571 (594)
Q Consensus 556 ~~~~~~~~~~~~~~~~ 571 (594)
++.+++++.....+++
T Consensus 390 ~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 390 AAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888887777666543
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-28 Score=259.32 Aligned_cols=359 Identities=11% Similarity=0.104 Sum_probs=249.4
Q ss_pred CCchhHHHHHHHHHHHHhhhhhhhHHHHHHhh-CCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHh
Q psy16660 96 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRT-FPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 174 (594)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~ 174 (594)
++..+.+.+..++..++++. ..|.+|.+.++ ++.+..+. |++.+++.++..++++++|+++||+|||++++++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~g~s~~~~-g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~ 86 (420)
T PRK09528 9 NPNYWIFSLFFFFFFFIWSS-WFSFFPIWLHDINGLSGTDT-GIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGL 86 (420)
T ss_pred CcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 45667777778888888887 89999999877 66665555 99999999999999999999999999999987765544
Q ss_pred hhhhhh-hcchHHHHH-----HHHHHHHHH-hHHHHHHHHHhhcccc--cccccchhchhHHHHHHHHhhhhhhhHHHHh
Q psy16660 175 CLPIPL-MTLDTWWFF-----AMISISGVF-AVTFSVVFAYVADVTE--EHERSLAYGLKFIALKIILMTLDTWWFFAMI 245 (594)
Q Consensus 175 ~i~~~~-~~~~~~~l~-----~~r~l~Gi~-~~~~~~~~a~i~~~~~--~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 245 (594)
++.... +......+. ...++.++. +.........+.++.+ .+++++.+|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~--------------------- 145 (420)
T PRK09528 87 LVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGR--------------------- 145 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchh---------------------
Confidence 433221 111111111 111222221 1111111111222211 1233344444
Q ss_pred hhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Q psy16660 246 SISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFF 325 (594)
Q Consensus 246 ~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~ 325 (594)
.....++|..+||.+++++.+ .+|+.+|++.++..++..++
T Consensus 146 --------------------------------------~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~ 186 (420)
T PRK09528 146 --------------------------------------ARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVL 186 (420)
T ss_pred --------------------------------------hHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHH
Confidence 778889999999999999876 58999999988877776666
Q ss_pred hheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---CCChh
Q psy16660 326 ILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVM---GFDEV 402 (594)
Q Consensus 326 ~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~~ 402 (594)
.++..||++++...+++ + + +.+.+...++.++.+|||.++.+.+..++............|.|+.+.+ +.+..
T Consensus 187 ~~~~~~~~~~~~~~~~~-~--~-~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (420)
T PRK09528 187 LFFAKPDAPSTAKVANA-L--G-ANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTR 262 (420)
T ss_pred Hhcccccccchhhhccc-h--h-cccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchH
Confidence 55544443322211110 0 0 0011223455666778888776665555544444445556777776654 45667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhh
Q psy16660 403 HVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSM 481 (594)
Q Consensus 403 ~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~ 481 (594)
+.|.+.+...++..++.++.|++.||+++|+.+..+.++.+++..++.+.++.+.++...++.+++ +...+....++.+
T Consensus 263 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 342 (420)
T PRK09528 263 VFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITL 342 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999998888888888888888888777777777777 6666777788899
Q ss_pred cCCCccchHHHHH-HHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 482 HSDADRQGLVQGM-VTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 482 ~~p~~~~g~~~g~-~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
..|++.+++..+. +++...+|.+++|.+.|.+.|..|+.
T Consensus 343 ~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~ 382 (420)
T PRK09528 343 NFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQ 382 (420)
T ss_pred HcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCch
Confidence 9999999988766 67888999999999999999987755
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-28 Score=265.08 Aligned_cols=392 Identities=13% Similarity=0.081 Sum_probs=252.9
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHhhC----CCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhh
Q psy16660 104 VVIFLEFFAWGLLTMPIISVLNRTF----PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIP 179 (594)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~ 179 (594)
+..+++.+..+. .....|.+..+. ...+....+++.+...++..++.+++|+++||+|||+++.++.++..++.+
T Consensus 23 ~~~~~~g~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~ 101 (502)
T TIGR00887 23 VGFFTDSYDLFC-ISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATV 101 (502)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 334444444444 455556554432 122333449999999999999999999999999999999988877777665
Q ss_pred h--hcch------HHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccc
Q psy16660 180 L--MTLD------TWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGV 250 (594)
Q Consensus 180 ~--~~~~------~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 250 (594)
+ ++.+ ++.++++|+++|++ ++..+....++.|++|+++|+++.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~-------------------------- 155 (502)
T TIGR00887 102 ASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAA-------------------------- 155 (502)
T ss_pred HHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHH--------------------------
Confidence 5 3333 68899999999998 77788899999999999999999999
Q ss_pred cchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHH-----------------------hcC
Q psy16660 251 FAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEK-----------------------TYS 307 (594)
Q Consensus 251 ~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~-----------------------~~g 307 (594)
......+|..+|+.++.++.. .++
T Consensus 156 ---------------------------------~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (502)
T TIGR00887 156 ---------------------------------VFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYM 202 (502)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhccc
Confidence 888888999998888776532 247
Q ss_pred hHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCC----------------CCCCCcc-----ccCCchhhHhhhccc-
Q psy16660 308 LSLVVAVATAVAILDVFFILVAVPESLPEKVRQASW----------------GGAPISW-----EQADPFASLRKVGKD- 365 (594)
Q Consensus 308 w~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~----------------~~~~~~~-----~~~~~~~~~~~~~~~- 365 (594)
||+++.+.+++.++..+. .+++||+++....+++. +++..+. +.++...++++++++
T Consensus 203 WR~~~~~~~ip~~i~~~~-~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 281 (502)
T TIGR00887 203 WRILIGFGAVPALLALYF-RLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHF 281 (502)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHH
Confidence 999998888777665444 45699998742211110 0000000 001111234444432
Q ss_pred --hhHHHH----HHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHH------------HHHHHHHHHHHHHHHHHHHHH
Q psy16660 366 --QTILML----CVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAV------------FIAVIGTLSVSAQIILGCLMN 427 (594)
Q Consensus 366 --~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~i~~~~~~~~~g~l~d 427 (594)
++.+.. ....+...+..++...+.|.++++ .|++..+.+. ......++.+++.++.+++.|
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d 360 (502)
T TIGR00887 282 FKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVD 360 (502)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222111 112222233334555567777765 5776542211 223344566678899999999
Q ss_pred hhchHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHH
Q psy16660 428 VLGAKHTIIIGLVFEMLQLMWYGFGSQ----MWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLC 502 (594)
Q Consensus 428 r~g~~~~l~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg 502 (594)
|+|||++++.+..+.++++.++....+ ........+...++ ....+..+.+..|.+|++.|+++.|+.+....++
T Consensus 361 r~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~ 440 (502)
T TIGR00887 361 IIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAG 440 (502)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhH
Confidence 999999998888777776665554221 11111111111222 2344566777899999999999999999999999
Q ss_pred HhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhccCccccc
Q psy16660 503 NGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIPESIVTR 575 (594)
Q Consensus 503 ~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 575 (594)
++++|.+.+.+.+..+.+.+ .....+....|.+.+++.+++.+..+++||+++++
T Consensus 441 ~~~~~~~~~~l~~~~~~~~~------------------~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~~ 495 (502)
T TIGR00887 441 AIIGQFGFLYLAQHGDPTKG------------------YPTGIWMGHVLEIFALFMFLGILFTLLIPETKGKS 495 (502)
T ss_pred HHHHHHHhhhhhcccccccc------------------ccccccchHHHHHHHHHHHHHHHHheEeccCCCCC
Confidence 99999999999874321100 00012223455655555565555566778776654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-28 Score=260.75 Aligned_cols=342 Identities=13% Similarity=0.087 Sum_probs=243.0
Q ss_pred hhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhhhc------chHHHHHHH
Q psy16660 118 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT------LDTWWFFAM 191 (594)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~~~------~~~~~l~~~ 191 (594)
....|.+. +.+.+..+. |++.+++.++..++.++.|+++||+|||+++..+.++.+++.++.+ .+++.+++.
T Consensus 47 ~~~~p~~~-~~g~s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (438)
T TIGR00712 47 ALAMPYLV-EQGFSKGEL-GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVL 124 (438)
T ss_pred HhhhHHHH-HcCCCHhHh-HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 33455555 456665554 9999999999999999999999999999999988877777765522 357778889
Q ss_pred HHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhh
Q psy16660 192 ISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHE 270 (594)
Q Consensus 192 r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~ 270 (594)
|++.|++ +...+.....+.|++|+++|++++++
T Consensus 125 ~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~---------------------------------------------- 158 (438)
T TIGR00712 125 LFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSI---------------------------------------------- 158 (438)
T ss_pred HHHHHHHhhcchHHHHHHHHHhcCcccchhHHHH----------------------------------------------
Confidence 9999998 55677788899999999999999999
Q ss_pred hhhhhcccccccchhHHHhhHHHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhcc------CCC
Q psy16660 271 RSLAYGLSFSFSQVSATFAASMVFSPALGAYLE-KTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQ------ASW 343 (594)
Q Consensus 271 r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~-~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~------~~~ 343 (594)
.+...++|..+++.+.+... ...+||..|++.+++.++..++.++.+||++++...+ .+.
T Consensus 159 -------------~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (438)
T TIGR00712 159 -------------WNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDY 225 (438)
T ss_pred -------------HHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhccccc
Confidence 88888999998887766544 4579999999998888876666666678765432110 000
Q ss_pred CCCC-CccccC-Cchhh-HhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHH
Q psy16660 344 GGAP-ISWEQA-DPFAS-LRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQI 420 (594)
Q Consensus 344 ~~~~-~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~ 420 (594)
.++. .+.+.+ +..+. .+..++++.++...+..++.+....+..++.|.|+++..|+++.+.++......++.+++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~ 305 (438)
T TIGR00712 226 PDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTL 305 (438)
T ss_pred ccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHH
Confidence 0000 000000 01111 12467889999888877777777778888999999988899999999999999999999999
Q ss_pred HHHHHHHhhchHHHHHHHHHHH---HHHHHHHhh--hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHH
Q psy16660 421 ILGCLMNVLGAKHTIIIGLVFE---MLQLMWYGF--GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGM 494 (594)
Q Consensus 421 ~~g~l~dr~g~~~~l~~~~~~~---~i~~~~~~~--~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~ 494 (594)
+.|++.||+++++....+.... .++.+.+.. ..+.+......+..|++ ............+..|+++||+++|+
T Consensus 306 ~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 385 (438)
T TIGR00712 306 LCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGF 385 (438)
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhh
Confidence 9999999996433222232221 122222222 12334333333344443 22222223456788999999999999
Q ss_pred HHHHHHHHH-hHHHHHHHHHHHHhhcc
Q psy16660 495 VTGMRGLCN-GLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 495 ~~~~~~lg~-~lg~~~~g~l~~~~g~~ 520 (594)
.+...++++ +++|.+.|.+.|..|++
T Consensus 386 ~~~~~~~gg~~~gp~l~G~l~~~~g~~ 412 (438)
T TIGR00712 386 TGLFGYLGGSVAASAIVGYTVDFFGWD 412 (438)
T ss_pred hchHHHhhhhhhcchhHHHHHHhccch
Confidence 999988875 68999999999987755
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=266.29 Aligned_cols=329 Identities=12% Similarity=0.091 Sum_probs=243.4
Q ss_pred hCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhhh--c--chHHHHHHHHHHHHHH-hHH
Q psy16660 127 TFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLM--T--LDTWWFFAMISISGVF-AVT 201 (594)
Q Consensus 127 ~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~~--~--~~~~~l~~~r~l~Gi~-~~~ 201 (594)
+++.+..+. |++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.++. + .+++.+++.|+++|++ +..
T Consensus 70 ~~~~s~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~ 148 (465)
T TIGR00894 70 NFKWSGALQ-GLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSV 148 (465)
T ss_pred CCCCCHHHh-hHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccc
Confidence 455555555 999999999999999999999999999999999888777765552 2 3578899999999998 778
Q ss_pred HHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccc
Q psy16660 202 FSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSF 281 (594)
Q Consensus 202 ~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~ 281 (594)
.+....++.|++|+++|++++++
T Consensus 149 ~~~~~~~~~~~~~~~~r~~~~~~--------------------------------------------------------- 171 (465)
T TIGR00894 149 SPATHKIIVKWAPPKERSRLLGM--------------------------------------------------------- 171 (465)
T ss_pred hhhHHHHHHhcCCHHHHHHHHHH---------------------------------------------------------
Confidence 88889999999999999999999
Q ss_pred cchhHHHhhHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCC-----CC-CCccccCC
Q psy16660 282 SQVSATFAASMVFSPALGAYLEKTY-SLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWG-----GA-PISWEQAD 354 (594)
Q Consensus 282 ~~~~~~~~~g~~igp~l~~~l~~~~-gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~-----~~-~~~~~~~~ 354 (594)
...+..+|.+++|++++++.+.+ |||++|++.+++.++..++.+...+|+++++++..+.+ +. +.+.+..+
T Consensus 172 --~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~ 249 (465)
T TIGR00894 172 --STSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTR 249 (465)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCC
Confidence 99999999999999999999884 99999999988877766655555555543221110000 00 00000111
Q ss_pred chhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Q psy16660 355 PFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHT 434 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~ 434 (594)
...++++.++++.++...+..++.+........++|.|+++.+|.+..+.|+..+...++.+++.++.|++.||+++|+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~ 329 (465)
T TIGR00894 250 QSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKT 329 (465)
T ss_pred CCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 12357778899999999999998888888888999999999999999999999999999999999999999998764321
Q ss_pred --------HHHHHHHH--HHHHHHHhh-hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHH
Q psy16660 435 --------IIIGLVFE--MLQLMWYGF-GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLC 502 (594)
Q Consensus 435 --------l~~~~~~~--~i~~~~~~~-~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg 502 (594)
+..+.... ++..+.... ..+.+...+...+.+.+ +...+.......+..| +..|.+.|+.+....++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~ 408 (465)
T TIGR00894 330 LSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIG 408 (465)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHH
Confidence 11111111 111111111 22333333344444444 4444445555556665 48999999999999999
Q ss_pred HhHHHHHHHHHHHH
Q psy16660 503 NGLGPAMFGLIFYM 516 (594)
Q Consensus 503 ~~lg~~~~g~l~~~ 516 (594)
+.++|.+.|.+.+.
T Consensus 409 ~~i~p~l~g~~~~~ 422 (465)
T TIGR00894 409 GLIASTLAGNILSQ 422 (465)
T ss_pred HHHHHHhhheeeCC
Confidence 99999999988753
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-28 Score=262.14 Aligned_cols=336 Identities=15% Similarity=0.116 Sum_probs=231.4
Q ss_pred hhhHHHHHHhhC--------CCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhhhc------
Q psy16660 117 TMPIISVLNRTF--------PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT------ 182 (594)
Q Consensus 117 ~~~~~~~~~~~~--------~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~~~------ 182 (594)
..+..|.+.+++ +.++.+. |++.+++.++..++++++|+++||+|||++++++.++.+++.+..+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~ 109 (479)
T PRK10077 31 ISGTVESLNTVFVAPQNLSESAANSLL-GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGF 109 (479)
T ss_pred ehHhHHHHHHHhcccccccccCChhHH-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 566677776665 4444444 9999999999999999999999999999999999887776655422
Q ss_pred --------chHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccch
Q psy16660 183 --------LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAV 253 (594)
Q Consensus 183 --------~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 253 (594)
..++.+++.|+++|++ ++..+...++++|++|+++|++++++
T Consensus 110 ~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~----------------------------- 160 (479)
T PRK10077 110 TSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSF----------------------------- 160 (479)
T ss_pred ccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHH-----------------------------
Confidence 1256788999999998 77888999999999999999999999
Q ss_pred hhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHH--------HhcChHHHHHHHHHHHHHHHHH
Q psy16660 254 TFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLE--------KTYSLSLVVAVATAVAILDVFF 325 (594)
Q Consensus 254 ~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~--------~~~gw~~~f~~~~~~~ll~~~~ 325 (594)
.+....+|.++++.+++.+. +.+|||++|++.++..++..+.
T Consensus 161 ------------------------------~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~ 210 (479)
T PRK10077 161 ------------------------------NQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML 210 (479)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH
Confidence 88888899988888776553 3469999999988777776544
Q ss_pred hheeccCCCchhhccCCCCCCC-------CccccCCchhhHhhhcc-----chhHHHH-----HHHHHHHHH----hhhh
Q psy16660 326 ILVAVPESLPEKVRQASWGGAP-------ISWEQADPFASLRKVGK-----DQTILML-----CVTVFLSYL----PEAG 384 (594)
Q Consensus 326 ~~~~l~e~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~----~~~~ 384 (594)
.+++||++++...+++.++.+ ...+.+...++.+...+ .+..+.. ........+ ....
T Consensus 211 -~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (479)
T PRK10077 211 -LYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINV 289 (479)
T ss_pred -HHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhH
Confidence 556899875422111100000 00000000111111111 1111111 111111111 1112
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhh--h-H-HHHHH
Q psy16660 385 QYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGS--Q-M-WMMWA 460 (594)
Q Consensus 385 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~--~-~-~~~~~ 460 (594)
...+.|.+..+ .|.+....++.....++..+++.++.+++.||+|+|++++.+.++.+++++++.... + . +....
T Consensus 290 ~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~ 368 (479)
T PRK10077 290 VLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 368 (479)
T ss_pred HHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 22233444444 688877777777788888899999999999999999999999988888877665321 1 1 12223
Q ss_pred HHHHHHHh-hc-hHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16660 461 AGILASLA-SI-TYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIF 514 (594)
Q Consensus 461 ~~~l~g~~-~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~ 514 (594)
..++++.+ +. ..|..+.+++|.+|+++||++.|+.+...+++..+++.+++.+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~ 424 (479)
T PRK10077 369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD 424 (479)
T ss_pred HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34444444 32 34778899999999999999999999999999999988887655
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-28 Score=267.20 Aligned_cols=358 Identities=16% Similarity=0.176 Sum_probs=263.3
Q ss_pred hHHHHHHhhCCCc---hhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHH
Q psy16660 119 PIISVLNRTFPDH---TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMIS 193 (594)
Q Consensus 119 ~~~~~~~~~~~~~---~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~ 193 (594)
+..|.+.+|++.+ +.+. +++.+++.++..++.+++|+++||+|||++++++.++.+++.++ ++.+++.+++.|+
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~-~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~ 188 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKV-DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRL 188 (505)
T ss_pred cccccEEEEecceechHHHH-HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 5667788888876 5555 99999999999999999999999999999999998887777665 6679999999999
Q ss_pred HHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhh
Q psy16660 194 ISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERS 272 (594)
Q Consensus 194 l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~ 272 (594)
+.|++ ++..+...+++.|++|+++|+++.++
T Consensus 189 l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~------------------------------------------------ 220 (505)
T TIGR00898 189 LVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTL------------------------------------------------ 220 (505)
T ss_pred HHHhhccchHHHHHHHhheecChhhhHHHHHH------------------------------------------------
Confidence 99998 66788999999999999999999988
Q ss_pred hhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCC-------
Q psy16660 273 LAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGG------- 345 (594)
Q Consensus 273 ~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~------- 345 (594)
......+|.+++|.+++.+.+ ||+.+++.+++.++..+.. +++||+++....+.+.++
T Consensus 221 -----------~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~l~~ 285 (505)
T TIGR00898 221 -----------IQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPESPRWLISQGRIEEALKILQR 285 (505)
T ss_pred -----------HHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCCChHHHHHCCCHHHHHHHHHH
Confidence 888889999999998876653 9999999988877766554 568997653211110000
Q ss_pred ------CC---------Ccc--ccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHH
Q psy16660 346 ------AP---------ISW--EQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFI 408 (594)
Q Consensus 346 ------~~---------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 408 (594)
.. .+. +.+....++++++++|.++...+...+.++.....+...+.+..+ ++.+. ....
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~ 361 (505)
T TIGR00898 286 IAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGN-LGGNI---YLDL 361 (505)
T ss_pred HHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCCh---HHHH
Confidence 00 000 001111355677788888777666655544433333333333333 34443 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHh-hchHhHHHHHHhhcCCC
Q psy16660 409 AVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQM--WMMWAAGILASLA-SITYPAISALVSMHSDA 485 (594)
Q Consensus 409 ~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~--~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~ 485 (594)
...++..+++.++.+++.||+|||+.+..+.++.+++++++.+.++. +......++.+++ +..++..+.+..|.+|+
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 441 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT 441 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 45567778899999999999999999999988888887777665433 4444444455555 66778888999999999
Q ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHH
Q psy16660 486 DRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVA 565 (594)
Q Consensus 486 ~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 565 (594)
+.|++++|+.+....+|++++|.+.+ +.+ .+.. .++.+.+++.+++.+..
T Consensus 442 ~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~~~----------------------------~~~~~~~~~~~~~~~~~ 491 (505)
T TIGR00898 442 VVRNLGVGVCSTMARVGSIISPFLVY-LGE-KWLF----------------------------LPLVLFGGLALLAGILT 491 (505)
T ss_pred HHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HHHh----------------------------hHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 433 3322 45666666666666666
Q ss_pred HhccCcccc
Q psy16660 566 TFIPESIVT 574 (594)
Q Consensus 566 ~~~~~~~~~ 574 (594)
+++++++++
T Consensus 492 ~~lpet~~~ 500 (505)
T TIGR00898 492 LFLPETKGV 500 (505)
T ss_pred HcCcCCCCC
Confidence 777776654
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=249.54 Aligned_cols=341 Identities=13% Similarity=0.173 Sum_probs=248.5
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHH-HHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhh
Q psy16660 100 YHALVVIFLEFFAWGLLTMPIISV-LNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPI 178 (594)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~ 178 (594)
+..++..++....+.. ..|..|. +.++++.+..+. |++.+++.+++.++.++.|+++||+|||+.+.++.++.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 4 FFSWFGFFLSFSVWFA-FSPLAVQMIKDDLGLSTAQL-GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPC 81 (366)
T ss_pred HHHHHHHHHHHHHHHH-hHHhhhHHHHHHhCCCHHHh-hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 3444555555555555 7889995 778888887766 999999999999999999999999999999999988888876
Q ss_pred hh--hcc-hHHHHHHHHHHHHHHhHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhh
Q psy16660 179 PL--MTL-DTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTF 255 (594)
Q Consensus 179 ~~--~~~-~~~~l~~~r~l~Gi~~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 255 (594)
++ ++. +++.+++.|+++|++++..+...+++.|++|+++|+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~------------------------------- 130 (366)
T TIGR00886 82 LWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGL------------------------------- 130 (366)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHH-------------------------------
Confidence 66 566 89999999999999855567778899999999999999988
Q ss_pred hhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHH----------hcChHHHH-HHHHHHHHHHHH
Q psy16660 256 SVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEK----------TYSLSLVV-AVATAVAILDVF 324 (594)
Q Consensus 256 ~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~----------~~gw~~~f-~~~~~~~ll~~~ 324 (594)
......+|..+++.+++.+.. ..+||+.| +..+++..+..+
T Consensus 131 ----------------------------~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 182 (366)
T TIGR00886 131 ----------------------------AAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPAL 182 (366)
T ss_pred ----------------------------HHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHH
Confidence 776777777777777766554 24899999 444544444444
Q ss_pred HhheeccCCCchhhccCCCCCCCCc-cccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhH
Q psy16660 325 FILVAVPESLPEKVRQASWGGAPIS-WEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVH 403 (594)
Q Consensus 325 ~~~~~l~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 403 (594)
+.+...+|.+++++++.+.+..... ..+++..++.++.+++|.++...+..++..........+.+.|+++.+|.++.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 262 (366)
T TIGR00886 183 LIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVT 262 (366)
T ss_pred HHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 4444556654322111110000000 001111224556678888888887777777777788889999999989999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhh--hh--hHHHHHHHHHHHHHh-hchHhHHHHH
Q psy16660 404 VAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGF--GS--QMWMMWAAGILASLA-SITYPAISAL 478 (594)
Q Consensus 404 ~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~--~~--~~~~~~~~~~l~g~~-~~~~~~~~~~ 478 (594)
.+.+.....+..+++.++.|++.||+|+|+.+..+......+..++.. .+ +.+..+....+.+++ +...+...+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 342 (366)
T TIGR00886 263 AGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFAL 342 (366)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhc
Confidence 999999999999999999999999999988777776666555544433 22 444444444444444 5555666777
Q ss_pred HhhcCCCccchHHHHHHHHHHHHH
Q psy16660 479 VSMHSDADRQGLVQGMVTGMRGLC 502 (594)
Q Consensus 479 ~~~~~p~~~~g~~~g~~~~~~~lg 502 (594)
+.+..| +++|+++|+.+..+++|
T Consensus 343 ~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 343 VPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred chhhch-hhcccHHHHHHHhccCC
Confidence 777775 69999999999988775
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=246.04 Aligned_cols=356 Identities=12% Similarity=0.091 Sum_probs=258.1
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhHHHHHHhh-CCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhh
Q psy16660 97 PSVYHALVVIFLEFFAWGLLTMPIISVLNRT-FPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 175 (594)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~ 175 (594)
|.++.+....++...+++. ..|.+|.+..+ ++.+..+. |++.+++.+...+++++.|+++||+|||+.++.+....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~-g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~ 79 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSA-YFPFFPIWLHDVNGLSKTDT-GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLL 79 (396)
T ss_pred hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3456666677778888787 89999988765 56665555 999999999999999999999999999999887655544
Q ss_pred hhhhh---h--cc-----hHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHH
Q psy16660 176 LPIPL---M--TL-----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAM 244 (594)
Q Consensus 176 i~~~~---~--~~-----~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 244 (594)
++... + .. ..+.+++.+++.|++ +...+...++..|..+ +++..+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~-------------------- 137 (396)
T TIGR00882 80 VLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGK-------------------- 137 (396)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccch--------------------
Confidence 33221 1 11 123345567777776 4455555556555322 23344555
Q ss_pred hhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q psy16660 245 ISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVF 324 (594)
Q Consensus 245 ~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~ 324 (594)
.....++|..+||.+++.+.+ .+|+.+|++.+++.++..+
T Consensus 138 ---------------------------------------~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~ 177 (396)
T TIGR00882 138 ---------------------------------------ARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILML 177 (396)
T ss_pred ---------------------------------------hhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHH
Confidence 777788999999999998865 6999999999888777665
Q ss_pred HhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---CCCh
Q psy16660 325 FILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVM---GFDE 401 (594)
Q Consensus 325 ~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~ 401 (594)
+.+...||+++++..+ +.. + ..++++..++.++.+|||.++.+++..++..........+.+.|+++.+ +.+.
T Consensus 178 ~~~~~~~~~~~~~~~~-~~~--~-~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 253 (396)
T TIGR00882 178 LLMFAKPKAPSSATVA-NAL--G-ANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGT 253 (396)
T ss_pred HHHHhCCCCchhhhhh-ccc--c-cccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 5544445443221111 100 0 0011223356778889999887777666655555556667788888765 4556
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHh
Q psy16660 402 VHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVS 480 (594)
Q Consensus 402 ~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~ 480 (594)
...|...+...+...++....+++.||+++|+.+.++..+.++...+....++.+..++..++.+++ .........+..
T Consensus 254 ~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 333 (396)
T TIGR00882 254 RVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYIT 333 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888999999999999999999999999888888887777777777777777777777 555555666777
Q ss_pred hcCCCccchHHHHH-HHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 481 MHSDADRQGLVQGM-VTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 481 ~~~p~~~~g~~~g~-~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
+..|++.+++..+. .+....+|+.+++.+.|++.|..|+.
T Consensus 334 ~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~ 374 (396)
T TIGR00882 334 SQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQ 374 (396)
T ss_pred HhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccH
Confidence 78888888887776 67899999999999999999987765
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-26 Score=243.40 Aligned_cols=342 Identities=15% Similarity=0.121 Sum_probs=260.9
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh
Q psy16660 101 HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL 180 (594)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~ 180 (594)
.+....++..+..+. ..|.+|.+.++++.+..+. |++.+.+.+++.+++++.|++.||+|||+++.++.++.+++..+
T Consensus 7 ~~~~~f~~~G~~~~~-~~~l~~~~~~~~~~s~~~~-g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l 84 (410)
T TIGR00885 7 LITSLFALWGFANDI-TNPMVPQFQQAFTLTAFQA-ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL 84 (410)
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 344444444555555 6899999999999887766 99999999999999999999999999999999999988888766
Q ss_pred h-----cchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchh
Q psy16660 181 M-----TLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVT 254 (594)
Q Consensus 181 ~-----~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 254 (594)
+ ..+++.+++.|++.|+| +...+....++.+..|+++|++..++
T Consensus 85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 134 (410)
T TIGR00885 85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNL------------------------------ 134 (410)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHH------------------------------
Confidence 3 23789999999999999 66778888999999999999998888
Q ss_pred hhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHH--------------------------hcCh
Q psy16660 255 FSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEK--------------------------TYSL 308 (594)
Q Consensus 255 ~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~--------------------------~~gw 308 (594)
.+...++|..+||.+++.+.. ..+|
T Consensus 135 -----------------------------~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 185 (410)
T TIGR00885 135 -----------------------------AQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASV 185 (410)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHH
Confidence 899999999999999887742 2469
Q ss_pred HHHHHHHHHHHHHHHHHhhe-eccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHH
Q psy16660 309 SLVVAVATAVAILDVFFILV-AVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYS 387 (594)
Q Consensus 309 ~~~f~~~~~~~ll~~~~~~~-~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (594)
|++|++.+++.++..++..+ .+||.++++ + ++.+...+.++.+|+|.++..++..+++...+....+
T Consensus 186 ~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~--~----------~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s 253 (410)
T TIGR00885 186 QTPYMIIGAVVLAVALLIMLTKMPALNHSD--A----------KQISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWT 253 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccc--c----------ccccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999888776665444322 233321110 0 0011122445677899998888888888888878888
Q ss_pred HHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy16660 388 CLFVYLKLVM-GFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILAS 466 (594)
Q Consensus 388 ~~~~~~~~~~-g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g 466 (594)
+++.|.++.. +.+....+...+....+..+|+++.+++.||+++|+.+.+..++.++.+++....++... ....++.+
T Consensus 254 ~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~g 332 (410)
T TIGR00885 254 FIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCS 332 (410)
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHH
Confidence 8899987632 444444555666666777899999999999999999988888888888777777655443 44455555
Q ss_pred Hh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy16660 467 LA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 467 ~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g 518 (594)
++ +..+|...+...+..+++.+..+.++.... +|+++.|++.|.+.|..|
T Consensus 333 lf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~ 383 (410)
T TIGR00885 333 AFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKE 383 (410)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhc
Confidence 65 778899999999999876654444444433 999999999999999754
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-27 Score=244.20 Aligned_cols=326 Identities=14% Similarity=0.144 Sum_probs=251.7
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh-hcchHHHHHHHHHHH
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL-MTLDTWWFFAMISIS 195 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~-~~~~~~~l~~~r~l~ 195 (594)
..|.+|.+.++++.+..+. |++.+++.++..++.++.|+++||+|||+++.++.++.+++... ...+.+.+++.|++.
T Consensus 19 ~~~~lp~l~~~~~~s~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (355)
T TIGR00896 19 VGPLLPQIRSALGMSFSVA-GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIRSAPGTALLFAGTALI 97 (355)
T ss_pred CcccHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 6889999999999887766 99999999999999999999999999999999988776666555 456888999999999
Q ss_pred HHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhh
Q psy16660 196 GVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLA 274 (594)
Q Consensus 196 Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~ 274 (594)
|++ +...+.....+.|+++ ++|+++.++
T Consensus 98 g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~-------------------------------------------------- 126 (355)
T TIGR00896 98 GVGIAIINVLLPSLIKRDFP-QRVGLMTGL-------------------------------------------------- 126 (355)
T ss_pred HHHHHHHhccchHHHHHhCc-chhhHHHHH--------------------------------------------------
Confidence 998 5455566777888875 688998888
Q ss_pred hcccccccchhHHHhhHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCCcccc
Q psy16660 275 YGLSFSFSQVSATFAASMVFSPALGAYLEKTY--SLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQ 352 (594)
Q Consensus 275 ~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~--gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~ 352 (594)
.+....+|..+++.+++.+.+.. +||+.|...++..++... ..+|+.+++++++.
T Consensus 127 ---------~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~---~~~~~~~~~~~~~~----------- 183 (355)
T TIGR00896 127 ---------YSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL---AWIPQVRRRVAANQ----------- 183 (355)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---HHhhhhccccCCCC-----------
Confidence 89899999999999998887764 399988877655443322 22454332211110
Q ss_pred CCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-ch
Q psy16660 353 ADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVL-GA 431 (594)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~-g~ 431 (594)
.......++.+|+|.++...+..++....+.....++|.|+++ .|++..+.+...+...++.++++++.|++.||+ ++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~ 262 (355)
T TIGR00896 184 TTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQ 262 (355)
T ss_pred CCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc
Confidence 0011223456688888877777677667777778899999987 699999999999999999999999999999999 55
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcC-CCccchHHHHHHHHHHHHHHhHHHHH
Q psy16660 432 KHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHS-DADRQGLVQGMVTGMRGLCNGLGPAM 509 (594)
Q Consensus 432 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~lg~~lg~~~ 509 (594)
|+.+..+..+.+++.+++.+.++.+... ..++.|++ +..++...+.+.+.. ++++++...++.+...+++..++|.+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~ 341 (355)
T TIGR00896 263 RGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLF 341 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777776666544333222 45567888 777787777666544 45677999999999999999999999
Q ss_pred HHHHHHHhhc
Q psy16660 510 FGLIFYMFHV 519 (594)
Q Consensus 510 ~g~l~~~~g~ 519 (594)
.|.+.|+.|.
T Consensus 342 ~G~l~~~~g~ 351 (355)
T TIGR00896 342 VGVLHDISGN 351 (355)
T ss_pred HHHHHHHhcc
Confidence 9999998763
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-25 Score=240.20 Aligned_cols=363 Identities=15% Similarity=0.159 Sum_probs=257.1
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhccc-----Cchh-hHHHHHHHhhhhh
Q psy16660 105 VIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW-----GRKL-FLLITVFVTCLPI 178 (594)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~-----Grr~-~l~~~~~~~~i~~ 178 (594)
..+...+..+. ..+.+|.+.++.+.+..+. |++..+... .+..+++|+++||+ |||| .+.++.++.+++.
T Consensus 7 l~~~~~~~~~~-~~~~~~~~l~~~g~~~~~i-g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 7 LGFASGLPLAL-TSGTLQAWMTVEGLDIQTI-GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHHHhhhHHH-HHHHHHHHHHHcCCCHHHH-HHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence 34455555566 7899999999988887766 998766665 68899999999999 8876 5667666665444
Q ss_pred hh--hc---chHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccc
Q psy16660 179 PL--MT---LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFA 252 (594)
Q Consensus 179 ~~--~~---~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 252 (594)
.. +. .+++.+++..++.++. +...++..+++.|++|+++|+++.++
T Consensus 83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~---------------------------- 134 (402)
T PRK11902 83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAV---------------------------- 134 (402)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHH----------------------------
Confidence 43 32 2577777777777776 55667889999999999999999998
Q ss_pred hhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHhheecc
Q psy16660 253 VTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKT-YSLSLVVAVATAVAILDVFFILVAVP 331 (594)
Q Consensus 253 ~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~-~gw~~~f~~~~~~~ll~~~~~~~~l~ 331 (594)
...+.++|.++|+.+++++.+. +|||.+|++.+++.++..+. .+.+|
T Consensus 135 -------------------------------~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~-~~~~~ 182 (402)
T PRK11902 135 -------------------------------KVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT-TLWAP 182 (402)
T ss_pred -------------------------------HHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH-HHhcC
Confidence 8888899999999999998885 59999999988877665443 34567
Q ss_pred CCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHH
Q psy16660 332 ESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVI 411 (594)
Q Consensus 332 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~ 411 (594)
|++++++++++ .+++..+++++++|||.++.+++..++..........+.+.++.+.+|+++.+.+++....
T Consensus 183 e~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~ 254 (402)
T PRK11902 183 EPEVPARPPRS--------LGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTL 254 (402)
T ss_pred CCcccccccch--------hHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHH
Confidence 76433211100 0112345677888999988877776666555444444555667777899999999988766
Q ss_pred HH-HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH---hhh-hhHHHHHHHHHH----HHHh-hchHhHHHHHHhh
Q psy16660 412 GT-LSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWY---GFG-SQMWMMWAAGIL----ASLA-SITYPAISALVSM 481 (594)
Q Consensus 412 ~i-~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~---~~~-~~~~~~~~~~~l----~g~~-~~~~~~~~~~~~~ 481 (594)
+. +.+++.++.+++.||+++|+.+..+..+..+..+.+ ... ++.+..+....+ .+++ +...+....++++
T Consensus 255 ~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 334 (402)
T PRK11902 255 GLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNR 334 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 54 578999999999999999988877766655544332 333 344555544433 3333 3444555556565
Q ss_pred cCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHH
Q psy16660 482 HSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAA 561 (594)
Q Consensus 482 ~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 561 (594)
..| ++..+..+...+++..+++.++|.++|..|+. ..|.+++++.+++
T Consensus 335 ~~~----~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~----------------------------~~f~~~~~~~~~~ 382 (402)
T PRK11902 335 SFS----ATQYALLSALASVGRVYVGPTSGYLVEAYGWP----------------------------GFYLMTVVIALPG 382 (402)
T ss_pred CCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH----------------------------HHHHHHHHHHHHH
Confidence 555 44556666677788887788999999998865 7788888777777
Q ss_pred HHHHHhccCc
Q psy16660 562 LLVATFIPES 571 (594)
Q Consensus 562 ~~~~~~~~~~ 571 (594)
+++....+++
T Consensus 383 ~~~~~~~~~~ 392 (402)
T PRK11902 383 LALLWLMRGT 392 (402)
T ss_pred HHHHHHHhhh
Confidence 6665444433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-27 Score=280.02 Aligned_cols=355 Identities=15% Similarity=0.126 Sum_probs=266.5
Q ss_pred CchhHHHHHHHHHHHHhhhhhhh---HHH-HHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHH--
Q psy16660 97 PSVYHALVVIFLEFFAWGLLTMP---IIS-VLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLIT-- 170 (594)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~-- 170 (594)
+.+..++...++..++.++.... ... .+..+.+.......++..+++.+++.++++++|+++||||||+++...
T Consensus 11 ~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~ 90 (1140)
T PRK06814 11 RRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKF 90 (1140)
T ss_pred cccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHH
Confidence 34455566666666665541111 111 222233333445569999999999999999999999999999975331
Q ss_pred -H-HHhhhhhhh-hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhh
Q psy16660 171 -V-FVTCLPIPL-MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMIS 246 (594)
Q Consensus 171 -~-~~~~i~~~~-~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 246 (594)
. +..+++... ...++++++++|+++|++ +...++..+++.+++++++|++++|+
T Consensus 91 ~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~---------------------- 148 (1140)
T PRK06814 91 AEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANAL---------------------- 148 (1140)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHH----------------------
Confidence 1 222222222 336899999999999998 56778889999999999999999999
Q ss_pred hccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHh
Q psy16660 247 ISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFI 326 (594)
Q Consensus 247 ~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~ 326 (594)
.+++.++|.++||++++++....+|++.|+...+..++. ++.
T Consensus 149 -------------------------------------~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~ 190 (1140)
T PRK06814 149 -------------------------------------VEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLG-WLA 190 (1140)
T ss_pred -------------------------------------HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-HHH
Confidence 999999999999999999999999999995555544443 344
Q ss_pred heeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHH
Q psy16660 327 LVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAV 406 (594)
Q Consensus 327 ~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 406 (594)
.+.+|++++.+..... . .+ ...+....++.+++++.++...+..++.++.......++|.|+++.+|.++.+.|+
T Consensus 191 ~~~~~~~~~~~~~~~~-~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~ 265 (1140)
T PRK06814 191 SLFIPKTGNAAPDLKI-D---RN-IIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATL 265 (1140)
T ss_pred HhhCCCCCCCCCCCee-c---cc-hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHH
Confidence 4557765432211100 0 00 01122346777889999999988888888877788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh--------------------hhHHHHHHHHHHHH
Q psy16660 407 FIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFG--------------------SQMWMMWAAGILAS 466 (594)
Q Consensus 407 ~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~--------------------~~~~~~~~~~~l~g 466 (594)
+++..+++.+++.++.+++.++..+++.+..+.++.+++.+.+.+. .+.|.+++..+++|
T Consensus 266 ~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 345 (1140)
T PRK06814 266 FLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLA 345 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHH
Confidence 9999999999999999999988776666655555554444333332 56677777778888
Q ss_pred Hh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16660 467 LA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYM 516 (594)
Q Consensus 467 ~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~ 516 (594)
++ +...+...+++++.+|++.+|+++|+.++...++..+++.++|.+.+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~ 396 (1140)
T PRK06814 346 AAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL 396 (1140)
T ss_pred HHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88 778888999999999999999999999999999999999999998753
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=243.75 Aligned_cols=307 Identities=13% Similarity=0.117 Sum_probs=229.5
Q ss_pred HHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHH--------HHHHHHHHHHHH-hHHHHHHHHHhhc
Q psy16660 143 KGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTW--------WFFAMISISGVF-AVTFSVVFAYVAD 211 (594)
Q Consensus 143 ~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~--------~l~~~r~l~Gi~-~~~~~~~~a~i~~ 211 (594)
..++..+++++.|+++||+|||+++..+.++..++..+ ++.+++ .+++.|+++|++ +...+...+++.|
T Consensus 44 ~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~ 123 (394)
T TIGR00883 44 GFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAE 123 (394)
T ss_pred HHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhh
Confidence 33444578899999999999999999998888877666 444543 578899999998 6677788899999
Q ss_pred ccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhH
Q psy16660 212 VTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAAS 291 (594)
Q Consensus 212 ~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g 291 (594)
++++++|++..++ ......+|
T Consensus 124 ~~~~~~r~~~~~~-----------------------------------------------------------~~~~~~~G 144 (394)
T TIGR00883 124 YAPPGKRGFYGSF-----------------------------------------------------------QQVGAPVG 144 (394)
T ss_pred cCCcccchHHHHH-----------------------------------------------------------HHHHHHHH
Confidence 9999999999988 88888899
Q ss_pred HHHHHHHHHHHH--------HhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhc
Q psy16660 292 MVFSPALGAYLE--------KTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVG 363 (594)
Q Consensus 292 ~~igp~l~~~l~--------~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (594)
.++++.++..+. +.++||++|++.+++.++...+ ...+||+++.++++.+.+ +...+.++.+
T Consensus 145 ~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 214 (394)
T TIGR00883 145 LLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL-RRNLEETPVFEKAQEKHK---------KKRGPIRETL 214 (394)
T ss_pred HHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH-HHhcCCChhHHHHHhccc---------cccCCHHHHH
Confidence 999988876654 3578999999887766654433 334666654332221110 1112334444
Q ss_pred cchh--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q psy16660 364 KDQT--ILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVF 441 (594)
Q Consensus 364 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~ 441 (594)
++++ ++......++..........+.|.|.++.+|.++.+.+.......++.+++.++.+++.||+|+|+.+..+..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 294 (394)
T TIGR00883 215 TKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVL 294 (394)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 4444 66666666666666677778899999888899999999999999999999999999999999999877755443
Q ss_pred HHHHH-HH-Hhh--hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHH-HHHHHHHHhHHHHHHHHHHH
Q psy16660 442 EMLQL-MW-YGF--GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMV-TGMRGLCNGLGPAMFGLIFY 515 (594)
Q Consensus 442 ~~i~~-~~-~~~--~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~-~~~~~lg~~lg~~~~g~l~~ 515 (594)
..+.. .. ... .++.+......++.+++ +...+..++++.|.+|+++|+++.++. +....+|..++|.+.|.+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~ 374 (394)
T TIGR00883 295 AALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA 374 (394)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence 33322 22 222 23455555666667776 678888999999999999999999985 45566889999999999999
Q ss_pred Hhh
Q psy16660 516 MFH 518 (594)
Q Consensus 516 ~~g 518 (594)
+.|
T Consensus 375 ~~g 377 (394)
T TIGR00883 375 MTG 377 (394)
T ss_pred HcC
Confidence 876
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-25 Score=240.71 Aligned_cols=349 Identities=14% Similarity=0.155 Sum_probs=243.7
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHhh-CCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCc-hhhHHHHHHHhhhhh
Q psy16660 101 HALVVIFLEFFAWGLLTMPIISVLNRT-FPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGR-KLFLLITVFVTCLPI 178 (594)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Gr-r~~l~~~~~~~~i~~ 178 (594)
.+....|+..+.++. ..|.++.+..+ .+.+..+. |++.+++.++..++++++|.++||+|| |+++.++.++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~-~~~~l~~~l~~~~g~s~~~i-Gl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~ 83 (418)
T TIGR00889 6 KLKFMSFLQWFIWGS-WLVTLGSYMSKTLHFSGAEI-GWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLL 83 (418)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 356678888888888 67777666644 66666655 999999999999999999999999965 777777776665554
Q ss_pred hh--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhh
Q psy16660 179 PL--MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTF 255 (594)
Q Consensus 179 ~~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 255 (594)
.+ +..+++.+++.|++.|++ +...+...++..+...++ ++
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~--g~----------------------------------- 126 (418)
T TIGR00889 84 FFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQA--GL----------------------------------- 126 (418)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhc--CC-----------------------------------
Confidence 44 455789999999998886 444454444432222111 00
Q ss_pred hhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCc
Q psy16660 256 SVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLP 335 (594)
Q Consensus 256 ~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~ 335 (594)
|..+...|.+.+ ..+|.++||.+++.+.....|+ +|++.+++.++..++ .+.+||+++
T Consensus 127 --------~~~~~~~~~r~~------------G~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~-~~~~~e~~~ 184 (418)
T TIGR00889 127 --------DVVTDFPPIRVM------------GTIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVF-ALTLPDIPV 184 (418)
T ss_pred --------CchhcCCCeeee------------hhHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHH-HhcCCCCCC
Confidence 101111121111 1367888898888774322343 466666666665544 456787643
Q ss_pred hhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCh--------hHHHHH
Q psy16660 336 EKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDE--------VHVAVF 407 (594)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--------~~~g~~ 407 (594)
.++++.. + .++....+.+..+|+|.++.+.+..++..........+.+.|.++ .|.++ ...+..
T Consensus 185 ~~~~~~~------~-~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~ 256 (418)
T TIGR00889 185 AKSTAKM------S-IKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIW 256 (418)
T ss_pred Ccccccc------C-HHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHH
Confidence 2211100 0 001111234457789998888777777766666666777888776 35443 567899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHh-hchHhHHHHHHhhc
Q psy16660 408 IAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGS----QMWMMWAAGILASLA-SITYPAISALVSMH 482 (594)
Q Consensus 408 ~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~ 482 (594)
.+...++.+++.++.|++.||+|+|+++..+.++.++++.++.... +.+.+++..++.|++ +...+....++.+.
T Consensus 257 ~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~ 336 (418)
T TIGR00889 257 MSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKE 336 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888876665532 234455667777887 77778888999999
Q ss_pred CCCccchHHHHHHH-HHHHHHHhHHHHHHHHHHHHhh
Q psy16660 483 SDADRQGLVQGMVT-GMRGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 483 ~p~~~~g~~~g~~~-~~~~lg~~lg~~~~g~l~~~~g 518 (594)
.|+++||+++|+.+ ....+|..+||.+.|.++|+.|
T Consensus 337 ~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g 373 (418)
T TIGR00889 337 VPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF 373 (418)
T ss_pred CCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 99999999999997 5678999999999999999876
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-26 Score=273.85 Aligned_cols=357 Identities=13% Similarity=0.096 Sum_probs=269.1
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCc-hhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhh
Q psy16660 97 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDH-TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 175 (594)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~ 175 (594)
+.+..+++..++..++.......+.+.+..+++.+ +....+++.+++.++..++++++|+++||+|||++++++.++.+
T Consensus 9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~ 88 (1146)
T PRK08633 9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEV 88 (1146)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHH
Confidence 34455555556655554432344455555555443 23345999999999999999999999999999999988775544
Q ss_pred hhhhh-----hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhcc
Q psy16660 176 LPIPL-----MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISG 249 (594)
Q Consensus 176 i~~~~-----~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 249 (594)
+..++ ...+++.+++.|+++|++ +...++..+++.|++|+++|++++++
T Consensus 89 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~------------------------- 143 (1146)
T PRK08633 89 GLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGL------------------------- 143 (1146)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhH-------------------------
Confidence 43322 235789999999999998 55677889999999999999999999
Q ss_pred ccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHh--------c-ChHHHHHHHHHHHH
Q psy16660 250 VFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKT--------Y-SLSLVVAVATAVAI 320 (594)
Q Consensus 250 ~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~--------~-gw~~~f~~~~~~~l 320 (594)
.+.+..+|.++|+.+++++.+. + +|.+.+.+..+...
T Consensus 144 ----------------------------------~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (1146)
T PRK08633 144 ----------------------------------LEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVA 189 (1146)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHH
Confidence 9999999999999999999875 2 34444444443333
Q ss_pred HHHHHhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCC
Q psy16660 321 LDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFD 400 (594)
Q Consensus 321 l~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s 400 (594)
+..++..+.+||.++....+.+.. ......+....++.+++++.++..++..++.+........++|.|+++.+|++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s 266 (1146)
T PRK08633 190 VLGLIFAYRLPKVPAAAPEVFDKK---KYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLD 266 (1146)
T ss_pred HHHHHHHhcCcCCCCCCccccccc---ccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCC
Confidence 333344455677654322211000 00011122345677788888888877777777777777788899999989999
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHH
Q psy16660 401 EV-HVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISAL 478 (594)
Q Consensus 401 ~~-~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~ 478 (594)
.. +.|++++..+++.+++.++.+++.||+++++.+.++.++.+++++++.+..+.+..++..+++|++ +...+...++
T Consensus 267 ~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 346 (1146)
T PRK08633 267 NTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNAL 346 (1146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 98 999999999999999999999999999998888888888888888877777777777788888888 7778888999
Q ss_pred HhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16660 479 VSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFY 515 (594)
Q Consensus 479 ~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~ 515 (594)
+.+..|++.||+++|+.+++.++|.++++.+++.+..
T Consensus 347 ~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 347 IQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888877766543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-26 Score=245.22 Aligned_cols=341 Identities=16% Similarity=0.239 Sum_probs=247.0
Q ss_pred HHHhhhhhhhHHHHHH-hhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcc----cCchhh-HHHHHHHhhhhhhh--h
Q psy16660 110 FFAWGLLTMPIISVLN-RTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL----WGRKLF-LLITVFVTCLPIPL--M 181 (594)
Q Consensus 110 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr----~Grr~~-l~~~~~~~~i~~~~--~ 181 (594)
.+.++. ..+.++.+. ++++.+.... |++.++..+..++..|+.|+++|| +||||. ++.+....+++.++ .
T Consensus 12 ~~~~~~-~~~~l~~~~~~~~g~s~~~~-g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~ 89 (437)
T TIGR00792 12 NFIFAI-VSTYLLFFYTDVLGLSAAFV-GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFT 89 (437)
T ss_pred HHHHHH-HHHHHHHHHHHccCCCHHHH-HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHh
Confidence 333444 455555554 4566666655 999999999999999999999998 787554 66666666655444 2
Q ss_pred cc------hHHHHHHHHHHHHHH-hHHHHHHHHHhhccc-ccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccch
Q psy16660 182 TL------DTWWFFAMISISGVF-AVTFSVVFAYVADVT-EEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAV 253 (594)
Q Consensus 182 ~~------~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~-~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 253 (594)
.+ ..+++++.+++.+++ +....+..++..|.. +++||++..++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~----------------------------- 140 (437)
T TIGR00792 90 TPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTF----------------------------- 140 (437)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHH-----------------------------
Confidence 22 245666677777776 444445567777766 35677776666
Q ss_pred hhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHH-------hcChHHHHHHHHHHHHHHHHHh
Q psy16660 254 TFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEK-------TYSLSLVVAVATAVAILDVFFI 326 (594)
Q Consensus 254 ~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~-------~~gw~~~f~~~~~~~ll~~~~~ 326 (594)
.+....+|.++++.+.+.+.. ..+|++.+.+.+++.++..++.
T Consensus 141 ------------------------------~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~ 190 (437)
T TIGR00792 141 ------------------------------RRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIIC 190 (437)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 666667776666655554442 4589999999998888877766
Q ss_pred heeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHH
Q psy16660 327 LVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAV 406 (594)
Q Consensus 327 ~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 406 (594)
++..||++++.+.++ .++.+..+.++.+++||.++.+++..++..........+.+.|.+..++ ++.+.+.
T Consensus 191 ~~~~~e~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 261 (437)
T TIGR00792 191 FFGTKERYSEIPKNI--------EKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSY 261 (437)
T ss_pred HcCCEecCCCCCccc--------ccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHH
Confidence 677787642211110 0112234567778899999988888777777766665566666665555 5566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCC
Q psy16660 407 FIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFG-SQMWMMWAAGILASLA-SITYPAISALVSMHSD 484 (594)
Q Consensus 407 ~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p 484 (594)
+.....++.+++.++.+++.||+|+|+.+..+.++.+++++++.+. ++.+...+..++.+++ +...+..+++++|..|
T Consensus 262 ~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 341 (437)
T TIGR00792 262 MGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVD 341 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 7777889999999999999999999999999988888877766654 3455566666777777 7778888899888865
Q ss_pred -------CccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 485 -------ADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 485 -------~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
++++|.+.|+.++..++|..+++.+.|.+.+..|+.
T Consensus 342 ~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 342 YGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred hhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 456899999999999999999999999999998875
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=233.93 Aligned_cols=313 Identities=14% Similarity=0.142 Sum_probs=238.5
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhccc-----CchhhH-HHHHHHhhhhhhh--hc---chH
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW-----GRKLFL-LITVFVTCLPIPL--MT---LDT 185 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~-----Grr~~l-~~~~~~~~i~~~~--~~---~~~ 185 (594)
..+.+|.+.++.+.+..+. |+.... .+...+ .+++|+++||+ ||||.+ +.+.++.++...+ +. .+.
T Consensus 7 ~~~~~~~~~~~~g~s~~~~-g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l 83 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLKTI-GFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDL 83 (356)
T ss_pred HHhHHHHHHHHcCCCHHHH-HHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhH
Confidence 6788999999998887766 888655 555554 99999999998 898874 5555555544333 33 356
Q ss_pred HHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhcc
Q psy16660 186 WWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVAD 264 (594)
Q Consensus 186 ~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d 264 (594)
+.+....++.+++ +...++..+++.|++|+++|+++.++
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~---------------------------------------- 123 (356)
T TIGR00901 84 PLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTI---------------------------------------- 123 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHH----------------------------------------
Confidence 6677777777776 55667778999999999999999998
Q ss_pred chhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcC--------hHHHHHHHHHHHHHHHHHhheeccCCCch
Q psy16660 265 VTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYS--------LSLVVAVATAVAILDVFFILVAVPESLPE 336 (594)
Q Consensus 265 ~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~g--------w~~~f~~~~~~~ll~~~~~~~~l~e~~~~ 336 (594)
...+..+|.++++.+++.+.+..+ ||.+|++.++..++..+..++..||+.++
T Consensus 124 -------------------~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~ 184 (356)
T TIGR00901 124 -------------------YIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED 184 (356)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 999999999999999999988888 99999999987777655545446664321
Q ss_pred hhccCCCCCCCCccccCCchhhHhhhccchh---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHH-
Q psy16660 337 KVRQASWGGAPISWEQADPFASLRKVGKDQT---ILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIG- 412 (594)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~- 412 (594)
++.+ + .+.++..+.+++++++|. ++.+.+..++..........+.+.|+++ +|+++.+.+.+....+
T Consensus 185 ~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~ 255 (356)
T TIGR00901 185 ASVP---K-----PLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGL 255 (356)
T ss_pred cccc---h-----hHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHH
Confidence 1100 0 001122345566667665 6666666676777777888899999988 7999999998888766
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh-----------hhHHHHHHHHHHHHHh-hchHhHHHHHHh
Q psy16660 413 TLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFG-----------SQMWMMWAAGILASLA-SITYPAISALVS 480 (594)
Q Consensus 413 i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~l~g~~-~~~~~~~~~~~~ 480 (594)
++.+++.++++++.||+|+|+.+..+.++.+++..++.+. ++.+......++.+++ +...+...++.+
T Consensus 256 ~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 335 (356)
T TIGR00901 256 LGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLS 335 (356)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5677999999999999999999888888777766655442 3445566667777888 889999999999
Q ss_pred hcCCCccchHHHHHHHHHHH
Q psy16660 481 MHSDADRQGLVQGMVTGMRG 500 (594)
Q Consensus 481 ~~~p~~~~g~~~g~~~~~~~ 500 (594)
+.+|+++||+.+|+.+...+
T Consensus 336 ~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 336 KLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HhcCCCccHHHHHHHHHHHh
Confidence 99999999999999887764
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-24 Score=226.76 Aligned_cols=346 Identities=15% Similarity=0.118 Sum_probs=244.2
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHH--HHHHHHHHHHHhhHhhh-hhcccCchhhHHHHHHH-hh-
Q psy16660 101 HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLI--MGIKGFLSFLSAPLIGA-LSDLWGRKLFLLITVFV-TC- 175 (594)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~s~~~l~~~l~~~~~G~-lsDr~Grr~~l~~~~~~-~~- 175 (594)
.+....+...+.+++ ..|.+|.+.++.+.+..+. |+. .+++.+...+.+|+++. .+||+||||..++...+ .+
T Consensus 5 ~~~~ly~~~g~~~~~-~~p~lp~~l~~~g~~~~~i-Gl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~ 82 (390)
T TIGR02718 5 TLGLLYLSQGIPIGL-AMDALPTLLREDGAPLTAL-AFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA 82 (390)
T ss_pred HHHHHHHHHHhHHHH-HHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence 344455666666666 8999999999998776666 996 47778899899999955 79999999886554422 11
Q ss_pred -hhhhh-h--cch-HHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhcc
Q psy16660 176 -LPIPL-M--TLD-TWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISG 249 (594)
Q Consensus 176 -i~~~~-~--~~~-~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 249 (594)
+.... + ..+ ..+++...++.++. +...+...++..|..++++++...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~------------------------- 137 (390)
T TIGR02718 83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAV------------------------- 137 (390)
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHH-------------------------
Confidence 11111 1 222 33334444444444 44445666777777777777766666
Q ss_pred ccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhee
Q psy16660 250 VFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVA 329 (594)
Q Consensus 250 ~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~ 329 (594)
...+..+|.++|+.+.+++.+++|||.+|++.+++.++..+..++.
T Consensus 138 ----------------------------------~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 138 ----------------------------------QIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 7777788889998888899999999999999998877766655443
Q ss_pred ccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHH
Q psy16660 330 VPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIA 409 (594)
Q Consensus 330 l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 409 (594)
.|+++ +++++ +++...++++.+|+|.++......++........+.+.+.|+++ .|+++.+.|....
T Consensus 184 ~~~~~-~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~ 250 (390)
T TIGR02718 184 KDRAV-ASPEA-----------PLARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGM 250 (390)
T ss_pred CCCCc-Ccccc-----------chhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHh
Confidence 33322 11110 01122456677889988888888888877778888888999988 5999999999988
Q ss_pred HHHH-HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHh-hchHhHHHHHHhh
Q psy16660 410 VIGT-LSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGF------GSQMWMMWAAGILASLA-SITYPAISALVSM 481 (594)
Q Consensus 410 ~~~i-~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~------~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~ 481 (594)
..++ ..+++.++.|++.||+|+++.+..+..+..+..+.... .++.+..+....+.++. +...+...+...+
T Consensus 251 ~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 330 (390)
T TIGR02718 251 AGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMR 330 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8775 55678899999999999999988877665333222221 12223333333444555 6666777777767
Q ss_pred cCCC-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 482 HSDA-DRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 482 ~~p~-~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
..++ +++|+.+++.+...++|..++|.+.|.++|..|+.
T Consensus 331 ~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~ 370 (390)
T TIGR02718 331 FAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYA 370 (390)
T ss_pred HhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 7765 88999999999999999999999999999988765
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-26 Score=242.25 Aligned_cols=356 Identities=16% Similarity=0.163 Sum_probs=274.6
Q ss_pred hCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hc--chHHHHHHHHHHHHHH-hHH
Q psy16660 127 TFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MT--LDTWWFFAMISISGVF-AVT 201 (594)
Q Consensus 127 ~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~--~~~~~l~~~r~l~Gi~-~~~ 201 (594)
++.-++.+. |++.+.+..|+.++..+.|+++||||-|+++..+.++.+++.++ .+ .+++.+++.|++||++ +..
T Consensus 67 ~~~ws~~~k-~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 67 EYDWSSTEK-GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred eecCCHHHH-HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence 344555556 99999999999999999999999999999999999998888777 22 2677889999999998 788
Q ss_pred HHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccc
Q psy16660 202 FSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSF 281 (594)
Q Consensus 202 ~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~ 281 (594)
+|....+..+|.|++||++..++
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ai--------------------------------------------------------- 168 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAI--------------------------------------------------------- 168 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHH---------------------------------------------------------
Confidence 99999999999999999999999
Q ss_pred cchhHHHhhHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCC------CCCCccccCC
Q psy16660 282 SQVSATFAASMVFSPALGAYLEKT-YSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWG------GAPISWEQAD 354 (594)
Q Consensus 282 ~~~~~~~~~g~~igp~l~~~l~~~-~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~------~~~~~~~~~~ 354 (594)
..++..+|.+++.+++|++.+. +||+.+|++.++++++..++.+++..|+|.+.+.-.+.+ +...+..++.
T Consensus 169 --l~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~~~k~~~~~~~~ 246 (466)
T KOG2532|consen 169 --LTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKK 246 (466)
T ss_pred --HHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhcccccccCCC
Confidence 8999999999999999999988 999999999999999877766566666554322110000 0011111111
Q ss_pred chhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhch---
Q psy16660 355 PFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGA--- 431 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~--- 431 (594)
...+++++++++.+|...+..+........+..+.|.|+++++|++..+.|++.++..+...+..++.|.++||+.+
T Consensus 247 ~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~l 326 (466)
T KOG2532|consen 247 PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRIL 326 (466)
T ss_pred CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999998855
Q ss_pred ------HHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHH-HHHHHhhchHhHHHHHHhhcCCCccchHHHHHHHHHHHHH
Q psy16660 432 ------KHTIIIGLVFEMLQLMWYGFGSQ--MWMMWAAG-ILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLC 502 (594)
Q Consensus 432 ------~~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~-~l~g~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg 502 (594)
|..-.++....+++++.+++.+. .+...+.+ +..++.+...+..+.-..+.. +++.+..+|+.+....+.
T Consensus 327 s~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~ 405 (466)
T KOG2532|consen 327 SETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALA 405 (466)
T ss_pred chHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHH
Confidence 22233455566666666666542 22222222 223333444444444444444 678899999999999999
Q ss_pred HhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhc
Q psy16660 503 NGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFI 568 (594)
Q Consensus 503 ~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 568 (594)
++++|.+.|.+... + ....++..|.+.+++.+++.+.+.+.
T Consensus 406 ~~~~P~~vg~~~~~-~------------------------t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 406 GFIAPLLVGIIVTD-N------------------------TREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHheeeEeCC-C------------------------CHHHHHHHHHHHHHHHHHhchheeEe
Confidence 99999999998741 1 01223478888888877777655544
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=224.41 Aligned_cols=326 Identities=22% Similarity=0.350 Sum_probs=238.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhHHHHHHHHHh
Q psy16660 132 TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISISGVFAVTFSVVFAYV 209 (594)
Q Consensus 132 ~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l~Gi~~~~~~~~~a~i 209 (594)
.....|.+.+.+.+.+++.++.+|.++||||||++++++++..++...+ .+.|+..+.++|++.|+.-+...+..+++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAii 145 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAII 145 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHH
Confidence 3455699999999999999999999999999999999999999888776 55588666667999999877777788888
Q ss_pred hcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHh
Q psy16660 210 ADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFA 289 (594)
Q Consensus 210 ~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~ 289 (594)
+|++++|+|+++++. ++.+++
T Consensus 146 sdV~sek~r~l~ms~-----------------------------------------------------------v~~a~~ 166 (451)
T KOG2615|consen 146 SDVVSEKYRPLGMSL-----------------------------------------------------------VGTAFG 166 (451)
T ss_pred HhhcChhhccceeee-----------------------------------------------------------eehhhh
Confidence 888888888888887 999999
Q ss_pred hHHHHHHHHHHHHHH---hcC---hHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCC---CCCCccccCCchh--h
Q psy16660 290 ASMVFSPALGAYLEK---TYS---LSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWG---GAPISWEQADPFA--S 358 (594)
Q Consensus 290 ~g~~igp~l~~~l~~---~~g---w~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~---~~~~~~~~~~~~~--~ 358 (594)
+|.++||.+||++.+ ..| +-.+-++..+.+........+++||+.+.+++..... +.....++..... .
T Consensus 167 lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (451)
T KOG2615|consen 167 LGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEHSTLQEAADDRLALLKFARIF 246 (451)
T ss_pred cchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccccchhhhhhhhhhhcchhhhh
Confidence 999999999999987 222 2222233333333323444557999876655541111 0000000000000 0
Q ss_pred HhhhccchhHH-------HHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Q psy16660 359 LRKVGKDQTIL-------MLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLG- 430 (594)
Q Consensus 359 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g- 430 (594)
-....||+... .+.+..+++...+....+....+....+|+++.+.|.+++..++...+.+....+..+|..
T Consensus 247 ~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~ 326 (451)
T KOG2615|consen 247 KVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKG 326 (451)
T ss_pred hhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhcccccccccc
Confidence 01122443322 2233334444444444444445556678999999999999999999988888888788776
Q ss_pred -hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHH
Q psy16660 431 -AKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPA 508 (594)
Q Consensus 431 -~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~ 508 (594)
.+..+..++.++.-..+++........++.+..+..+. ....+....++.+..|+++||+++|+......++.++||.
T Consensus 327 ~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPl 406 (451)
T KOG2615|consen 327 NIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPL 406 (451)
T ss_pred chhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhh
Confidence 56666777777777777777788888888899999888 7788999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy16660 509 MFGLIFYM 516 (594)
Q Consensus 509 ~~g~l~~~ 516 (594)
+.|.+..+
T Consensus 407 v~g~i~~W 414 (451)
T KOG2615|consen 407 VSGVIFSW 414 (451)
T ss_pred hhheeEEE
Confidence 99988765
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=235.03 Aligned_cols=360 Identities=15% Similarity=0.132 Sum_probs=258.3
Q ss_pred CCchhHHHHHHHHHHHHhhhhhhhHHHHHHhh---CCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcc-cCchhhHHHHH
Q psy16660 96 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRT---FPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL-WGRKLFLLITV 171 (594)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr-~Grr~~l~~~~ 171 (594)
++.++.+++..++..+++.. ..+.+|.|.++ ++.+..+. |++.+.+.++..++.++.|+++|| +|||+++.++.
T Consensus 9 p~~~~~l~~~~~~~~~~~~~-~~~~L~~yl~~~~~lg~s~~~a-g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~ 86 (475)
T TIGR00924 9 PKPLFTLFFVELWERFSYYG-MQGILAVYLVQQAGLGFSQEQA-FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGG 86 (475)
T ss_pred ChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCCCHHHH-HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHH
Confidence 34556677777888888777 78999998765 56665555 999999999999999999999999 89999999999
Q ss_pred HHhhhhhhh--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhccccccc---ccchhchhHHHHHHHHhhhhhhhHHHHh
Q psy16660 172 FVTCLPIPL--MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHE---RSLAYGLKFIALKIILMTLDTWWFFAMI 245 (594)
Q Consensus 172 ~~~~i~~~~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~---r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 245 (594)
++.+++.++ ++.+++.++++|++.|+| +...+...++++|++|+++ |++++++
T Consensus 87 ~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~--------------------- 145 (475)
T TIGR00924 87 IVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTL--------------------- 145 (475)
T ss_pred HHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehh---------------------
Confidence 988888776 445678888999999998 5566788899999998754 7777777
Q ss_pred hhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Q psy16660 246 SISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFF 325 (594)
Q Consensus 246 ~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~ 325 (594)
.....++|..+||.+++++.++.||++.|.+.++..+++.+.
T Consensus 146 --------------------------------------~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 146 --------------------------------------FYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999899999999988655554333
Q ss_pred hheeccCCCchhhccCC-CCCCCCcccc--------------------------------------------CCchhhHh
Q psy16660 326 ILVAVPESLPEKVRQAS-WGGAPISWEQ--------------------------------------------ADPFASLR 360 (594)
Q Consensus 326 ~~~~l~e~~~~~~~~~~-~~~~~~~~~~--------------------------------------------~~~~~~~~ 360 (594)
. +..++..++.+++++ .++++.+... .++..+..
T Consensus 188 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (475)
T TIGR00924 188 F-FAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAV 266 (475)
T ss_pred H-HHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 2 222322111100000 0000000000 00000000
Q ss_pred hhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhch-----
Q psy16660 361 KVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVH----VAVFIAVIGTLSVSAQIILGCLMNVLGA----- 431 (594)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~g~~~~~~~i~~~~~~~~~g~l~dr~g~----- 431 (594)
+..|...+..+.+...+++..+....+.++.|.++..+.+... .+++.+...+..++..++..++..|.++
T Consensus 267 ~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~ 346 (475)
T TIGR00924 267 ARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDP 346 (475)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 0112223455556666667776677777888877754443222 6788888888888777775544333332
Q ss_pred HHH--HHHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHH
Q psy16660 432 KHT--IIIGLVFEMLQLMWYGF---------GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMR 499 (594)
Q Consensus 432 ~~~--l~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 499 (594)
+.. +.+|+++.+++++.+.+ ..+.|.++...++.++| ....|..++++.+..|++.||+++|+.....
T Consensus 347 ~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~ 426 (475)
T TIGR00924 347 TTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQ 426 (475)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 333 36788888888777664 35788888999999999 8899999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHh
Q psy16660 500 GLCNGLGPAMFGLIFYMF 517 (594)
Q Consensus 500 ~lg~~lg~~~~g~l~~~~ 517 (594)
.+|..+++.+.....+..
T Consensus 427 ~~g~~l~~~~~~~~~~~~ 444 (475)
T TIGR00924 427 AMGSLLGGYLATFGAVPQ 444 (475)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999988888766543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-24 Score=227.60 Aligned_cols=354 Identities=18% Similarity=0.167 Sum_probs=257.3
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh-----hcchHHHHHHHHHHHHHH-hHHHHHHHHH
Q psy16660 135 MNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL-----MTLDTWWFFAMISISGVF-AVTFSVVFAY 208 (594)
Q Consensus 135 ~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~-----~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~ 208 (594)
..+.+.+++.+|.++++...|.++||+|||..+++..++..++.++ ...++.+++++|++.|+. +.......-+
T Consensus 61 lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmy 140 (485)
T KOG0569|consen 61 LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMY 140 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3588999999999999999999999999999998888777666555 344889999999999997 5566788999
Q ss_pred hhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHH
Q psy16660 209 VADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATF 288 (594)
Q Consensus 209 i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~ 288 (594)
+.|..|.+.||..... .+.+.
T Consensus 141 l~E~sP~~~RG~~g~~-----------------------------------------------------------~~~~~ 161 (485)
T KOG0569|consen 141 LTEISPKNLRGALGTL-----------------------------------------------------------LQIGV 161 (485)
T ss_pred HhhcChhhhccHHHHH-----------------------------------------------------------HHHHH
Confidence 9999999999997766 66666
Q ss_pred hhHHHHHHHHHH--HHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhc-cCCCCCC---------------CCc-
Q psy16660 289 AASMVFSPALGA--YLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVR-QASWGGA---------------PIS- 349 (594)
Q Consensus 289 ~~g~~igp~l~~--~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~-~~~~~~~---------------~~~- 349 (594)
.+|..+|..++. .+.+.-.|++.+.+..+++++..+. +.++||+|+..-. +++.+++ +.+
T Consensus 162 ~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~-l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~ 240 (485)
T KOG0569|consen 162 VIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLAL-LPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEE 240 (485)
T ss_pred HHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHH-HhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHH
Confidence 676666655443 2223446999999999888887665 4559999875433 1111111 000
Q ss_pred ------cc--cCCchhhHhhhccchhHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Q psy16660 350 ------WE--QADPFASLRKVGKDQTILMLCVTVFLSYLPEA-----GQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSV 416 (594)
Q Consensus 350 ------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~ 416 (594)
.+ .++...+++++++|+..+.-....+...+.+. ....+...++++ .|++..++-+.....++..+
T Consensus 241 ~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~-aG~~~~~a~~an~~~g~v~~ 319 (485)
T KOG0569|consen 241 MLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKT-AGFTPEEAQYANLGIGIVNL 319 (485)
T ss_pred HHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHH
Confidence 00 11123456777888776654333332222222 122222233333 49999999999999999999
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhh-----h-HHHH---HHHHHHHHHh--hchHhHHHHHHhhcCCC
Q psy16660 417 SAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGS-----Q-MWMM---WAAGILASLA--SITYPAISALVSMHSDA 485 (594)
Q Consensus 417 ~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~-----~-~~~~---~~~~~l~g~~--~~~~~~~~~~~~~~~p~ 485 (594)
+..+++.++.||+|||++++.+..++.+..+++.... . .|.. +++.+++.++ .+..|..+-+.+|.+|+
T Consensus 320 ~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~ 399 (485)
T KOG0569|consen 320 LSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQ 399 (485)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCc
Confidence 9999999999999999999999998888777665421 1 2332 3444444444 34568889999999999
Q ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHH
Q psy16660 486 DRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVA 565 (594)
Q Consensus 486 ~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 565 (594)
+.|..++++......++.++....+..+.+..|.. ..+.+...+.+..+.++
T Consensus 400 ~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~----------------------------~filF~i~~~~~~i~~~ 451 (485)
T KOG0569|consen 400 SARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPY----------------------------VFILFVIPLAIFLIYLY 451 (485)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----------------------------hhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987732 34444555556666777
Q ss_pred HhccCcccccCc
Q psy16660 566 TFIPESIVTRSV 577 (594)
Q Consensus 566 ~~~~~~~~~~~~ 577 (594)
..+||+|+|...
T Consensus 452 ~~lPETkgr~~~ 463 (485)
T KOG0569|consen 452 RYLPETKGRTPY 463 (485)
T ss_pred HhCcccCCCCHH
Confidence 889999877543
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=233.33 Aligned_cols=316 Identities=18% Similarity=0.172 Sum_probs=251.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhhhc--chHHHHHHHHHHHHHH-hHHHHHHHHHh
Q psy16660 133 FLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAMISISGVF-AVTFSVVFAYV 209 (594)
Q Consensus 133 ~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~~~--~~~~~l~~~r~l~Gi~-~~~~~~~~a~i 209 (594)
..++|++.+.+.+.+.+..|+.|.+.||+|+|.++++|+.++..+.++++ .++++++++|.+||+| +.......+++
T Consensus 105 ~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglaml 184 (464)
T KOG3764|consen 105 NTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAML 184 (464)
T ss_pred ccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHH
Confidence 34569999999999999999999999999999999999999999888854 5999999999999999 66677778999
Q ss_pred hcccccc-cccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHH
Q psy16660 210 ADVTEEH-ERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATF 288 (594)
Q Consensus 210 ~~~~~~~-~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~ 288 (594)
+|.+|++ +|++++|+ .-...
T Consensus 185 Ad~f~~d~er~~vmGi-----------------------------------------------------------algfi 205 (464)
T KOG3764|consen 185 ADVFPEDNERGSVMGI-----------------------------------------------------------ALGFI 205 (464)
T ss_pred HHHcccchhhhHHHHH-----------------------------------------------------------HHHHH
Confidence 9988854 57888888 89999
Q ss_pred hhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhH
Q psy16660 289 AASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTI 368 (594)
Q Consensus 289 ~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (594)
++|.++||.+||.+.+..|.+.+|.+.+++.++...+.++.++.++.+++.. ..-.++++++++|.+
T Consensus 206 slG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~-------------~~~~~~~~Ll~dP~I 272 (464)
T KOG3764|consen 206 SLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDST-------------EQGTPMWSLLMDPYI 272 (464)
T ss_pred hccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcccc-------------ccCccHHHHHhCchH
Confidence 9999999999999999999999999999999998888777676654333211 111346677899999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHH
Q psy16660 369 LMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLG--AKHTIIIGLVFEMLQL 446 (594)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g--~~~~l~~~~~~~~i~~ 446 (594)
+...................++.+..+.+..+.-+.|+.+...++...++..+.|.+.||++ |......+++.....+
T Consensus 273 ~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~ 352 (464)
T KOG3764|consen 273 LLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSS 352 (464)
T ss_pred hhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHh
Confidence 98887777777777777888889888888855559999999999999999999999999999 4444445555566666
Q ss_pred HHHhhhhhHHHHHHHHHHHHHh-hchHhHHH---HHHhhcCCCc---cchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Q psy16660 447 MWYGFGSQMWMMWAAGILASLA-SITYPAIS---ALVSMHSDAD---RQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHV 519 (594)
Q Consensus 447 ~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~---~~~~~~~p~~---~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~ 519 (594)
....+.++...+++-.+..+++ +....... .+..+....+ .-|..+++......+|.++||.++|.+++..|+
T Consensus 353 ~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF 432 (464)
T KOG3764|consen 353 GPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGF 432 (464)
T ss_pred chhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhH
Confidence 6666677766666555555554 33332222 2222222222 568999999999999999999999999999887
Q ss_pred c
Q psy16660 520 D 520 (594)
Q Consensus 520 ~ 520 (594)
.
T Consensus 433 ~ 433 (464)
T KOG3764|consen 433 E 433 (464)
T ss_pred H
Confidence 6
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=215.21 Aligned_cols=348 Identities=18% Similarity=0.333 Sum_probs=260.3
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCc-hhhHHHHHHHhhhhhh
Q psy16660 101 HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGR-KLFLLITVFVTCLPIP 179 (594)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Gr-r~~l~~~~~~~~i~~~ 179 (594)
.+....|+.++.+|. ..|.++.|.++.+.+..+. |.+.++..+...+..+++|.++||+++ ||.+.+..++.++...
T Consensus 6 rLs~~~f~~f~~~G~-~~p~~~~~L~~~G~s~~qI-G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~ 83 (400)
T PF03825_consen 6 RLSLMYFLYFFAYGA-FLPYLPLYLESRGFSGTQI-GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALL 83 (400)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHH
Confidence 456677888888898 8999999999999766666 999999999999999999999999874 6777666655555443
Q ss_pred h--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhh
Q psy16660 180 L--MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFS 256 (594)
Q Consensus 180 ~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 256 (594)
. ...+++.+++..++..+. ....|...++..+... ++++-+|-
T Consensus 84 ~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~-------------------------------- 129 (400)
T PF03825_consen 84 LLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGR-------------------------------- 129 (400)
T ss_pred HHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCc--------------------------------
Confidence 3 445788887777777775 5566666776666554 33444444
Q ss_pred hhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHH-HHHHHHhcC---hHHHHHHHHHHHHHHHHHhheeccC
Q psy16660 257 VVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPAL-GAYLEKTYS---LSLVVAVATAVAILDVFFILVAVPE 332 (594)
Q Consensus 257 ~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l-~~~l~~~~g---w~~~f~~~~~~~ll~~~~~~~~l~e 332 (594)
.....++|.+++... ++++....+ ....+++.+...++.... .+.+|+
T Consensus 130 ---------------------------iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~-~l~lp~ 181 (400)
T PF03825_consen 130 ---------------------------IRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGF-ALFLPK 181 (400)
T ss_pred ---------------------------chhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHH-HHhCCC
Confidence 777777888777544 233333222 234556655554443333 334777
Q ss_pred CCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q psy16660 333 SLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIG 412 (594)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~ 412 (594)
.+++++.+++ .++....+..+++|+|+++.+.+..++........+++.+.|+++.-|.+....|...+...
T Consensus 182 ~~~~~~~~~~--------~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~ 253 (400)
T PF03825_consen 182 TPPKRSAKES--------VKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGV 253 (400)
T ss_pred CccccccCCC--------cccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHH
Confidence 6533222211 11122234456789999999999999998888899999999999863377778888888889
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHH----HHHHHHh-hchHhHHHHHHhhcCCCc
Q psy16660 413 TLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFG-SQMWMMWAA----GILASLA-SITYPAISALVSMHSDAD 486 (594)
Q Consensus 413 i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~----~~l~g~~-~~~~~~~~~~~~~~~p~~ 486 (594)
++.++.....+++.+|+|.++++.++.+..++-..+++.. ++.+..+.. ..+.|+. +..+.....++.+.+|++
T Consensus 254 ~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~ 333 (400)
T PF03825_consen 254 VAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPE 333 (400)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999888876 444443332 3468888 889999999999999999
Q ss_pred cchHHHHHHHHH-HHHHHhHHHHHHHHHHHHhhcc
Q psy16660 487 RQGLVQGMVTGM-RGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 487 ~~g~~~g~~~~~-~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
.|++++++++.. ..+|..+|..++|+++|+.|.+
T Consensus 334 ~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~ 368 (400)
T PF03825_consen 334 LRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR 368 (400)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence 999999998876 5699999999999999998855
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-23 Score=209.19 Aligned_cols=330 Identities=18% Similarity=0.194 Sum_probs=270.4
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhhhcc-----hHHHHHHH
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-----DTWWFFAM 191 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~~~~-----~~~~l~~~ 191 (594)
..+.+|.+.+.++.+..+. +++..++..++.+.+++.|++.+|+|+|+-++.++.++++++.++.+ ++..++++
T Consensus 32 ~diLip~l~~~f~ls~~~a-~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~ 110 (422)
T COG0738 32 NDILIPHLKEVFDLTYFEA-SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVA 110 (422)
T ss_pred chhhHHHHHHHhCccHHHH-HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 6888999999999887777 99999999999999999999999999999999999999999988642 78889999
Q ss_pred HHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhh
Q psy16660 192 ISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHE 270 (594)
Q Consensus 192 r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~ 270 (594)
-++.|.| +...+.+..++....++++-.+.+.+
T Consensus 111 lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl---------------------------------------------- 144 (422)
T COG0738 111 LFILASGIGLLETAANPYVTLLGKPESAAFRLNL---------------------------------------------- 144 (422)
T ss_pred HHHHHhhhHHHHhccchHHHHhCCchhHHHHHHH----------------------------------------------
Confidence 9999999 67788889999999998877777777
Q ss_pred hhhhhcccccccchhHHHhhHHHHHHHHHHHHHHh-------------------cChHHHHHHHHHHHHHHHHHhhe-ec
Q psy16660 271 RSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKT-------------------YSLSLVVAVATAVAILDVFFILV-AV 330 (594)
Q Consensus 271 r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~-------------------~gw~~~f~~~~~~~ll~~~~~~~-~l 330 (594)
.+..+++|.++||++++++..+ -.++++|...+...++..+.... ..
T Consensus 145 -------------~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~ 211 (422)
T COG0738 145 -------------AQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKL 211 (422)
T ss_pred -------------HHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999988762 24778888777665554443322 23
Q ss_pred cCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHH
Q psy16660 331 PESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAV 410 (594)
Q Consensus 331 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~ 410 (594)
|+.++.++++.+ .++ ....+++++|.++...++.+++...+.....+++.|+.+..|.+..+.....+.
T Consensus 212 p~~~~~~~~~~~---------~~~--~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~ 280 (422)
T COG0738 212 PDLQVAAPSLGA---------SGS--AGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSF 280 (422)
T ss_pred CcCCcccccccc---------ccc--chHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 443322222211 111 145677899999999999999999999999999999999779999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccch
Q psy16660 411 IGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQG 489 (594)
Q Consensus 411 ~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g 489 (594)
+..+.++|++++.++.+|+...+.+....++..+-++...+.++.+.++ +.++.|+. +..+|...+...+..| ++ .
T Consensus 281 ~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~-~l~~ig~F~simfPTIfslal~~l~-~~-t 357 (422)
T COG0738 281 FWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALY-ALFLIGLFNSIMFPTIFSLALKNLG-EH-T 357 (422)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHH-HHHHHHHHhHHHHHHHHHHHHhccC-cc-c
Confidence 9999999999999999999999999888877777777777777754444 44455666 8999999999999998 33 4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 490 LVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 490 ~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
...|..-.+..+|+++.|.+.|++.|..|..
T Consensus 358 s~~s~~l~maivGGAiiP~l~G~i~d~~g~~ 388 (422)
T COG0738 358 SVGSGLLVMAIVGGAIIPPLQGVIADMFGIQ 388 (422)
T ss_pred cccceeeeeheecchHHHHHHHHHHHhhhhH
Confidence 4455555778899999999999999998865
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=230.31 Aligned_cols=360 Identities=12% Similarity=0.143 Sum_probs=257.6
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhh
Q psy16660 97 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL 176 (594)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i 176 (594)
..+..++++..+....-.. +..+.+...+.++.++... |++.+.+.+.+.+++|++|+++|||.||+++.+|..++.+
T Consensus 33 ~~l~il~~vnlmny~Dr~~-iagv~~~v~~~fni~~s~~-Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~ 110 (493)
T KOG1330|consen 33 LTLVILCLVNLMNYADRYT-IAGVLKEVQTYFNISDSEL-GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTL 110 (493)
T ss_pred HHHHHHHHHHHHHHhhhhh-hhhhhHHHHHhcCCCchhc-cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence 3344455555566555555 5667788888888888877 9999999999999999999999999999999999999999
Q ss_pred hhhh--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccch
Q psy16660 177 PIPL--MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAV 253 (594)
Q Consensus 177 ~~~~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 253 (594)
+.++ ++..+|++.++|.+.|+| +...++++++++|.+|+++|++++++
T Consensus 111 Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~i----------------------------- 161 (493)
T KOG1330|consen 111 AVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGI----------------------------- 161 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHH-----------------------------
Confidence 8887 566899999999999999 88999999999999999999999999
Q ss_pred hhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHhheeccC
Q psy16660 254 TFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYS-LSLVVAVATAVAILDVFFILVAVPE 332 (594)
Q Consensus 254 ~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~g-w~~~f~~~~~~~ll~~~~~~~~l~e 332 (594)
+..+..+|..+|..++..+.+..+ |||.|+..+++.++..++..++.+|
T Consensus 162 ------------------------------fy~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 162 ------------------------------FYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred ------------------------------hhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence 899999999999999988887655 9999999999999999988888888
Q ss_pred CCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHH---HhCCChhHHHHHHH
Q psy16660 333 SLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKL---VMGFDEVHVAVFIA 409 (594)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~ 409 (594)
+++....+.+.+ .....+....+++++.+.+++.+....+......+....+.-+.|.+... ..|.+..+.-++..
T Consensus 212 P~rga~~~~~~~-~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~ 290 (493)
T KOG1330|consen 212 PERGARDEVDGE-NKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGG 290 (493)
T ss_pred cccccccccccC-CcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhh
Confidence 765433322211 11112334456778888787877666665555555544444455544333 33556666667777
Q ss_pred HHHHHHHHHHHHHHHHHHhhchH----HHHHH-------HHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHh--hchHhHH
Q psy16660 410 VIGTLSVSAQIILGCLMNVLGAK----HTIII-------GLVFEMLQLMWYGF-GSQMWMMWAAGILASLA--SITYPAI 475 (594)
Q Consensus 410 ~~~i~~~~~~~~~g~l~dr~g~~----~~l~~-------~~~~~~i~~~~~~~-~~~~~~~~~~~~l~g~~--~~~~~~~ 475 (594)
+...+..+|.+++|.++||+.++ ..... +..+.+..+.+... ..+.......+++.|.. -..+...
T Consensus 291 vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n 370 (493)
T KOG1330|consen 291 VTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATN 370 (493)
T ss_pred HHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccc
Confidence 78888889999999999985321 11111 11111222222211 11222222233333333 2334455
Q ss_pred HHHHhhcCCCccchHHHHHHHHHHHH-HHhHHHHHHHHHHHHhh
Q psy16660 476 SALVSMHSDADRQGLVQGMVTGMRGL-CNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 476 ~~~~~~~~p~~~~g~~~g~~~~~~~l-g~~lg~~~~g~l~~~~g 518 (594)
.-+..+.+|+++|.+++++...+..+ |.+-+|.+.|.+.|+.-
T Consensus 371 ~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~ 414 (493)
T KOG1330|consen 371 NPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLR 414 (493)
T ss_pred cceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhh
Confidence 56678889999999999998877665 44555659999999754
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-24 Score=229.87 Aligned_cols=364 Identities=19% Similarity=0.275 Sum_probs=293.6
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHH-H
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMI-S 193 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r-~ 193 (594)
..-+.+.+.++++.+..+. +|+.++......+..|+.+.+.||||.|++.+.|.++.+++.++ ++.++|++++.. +
T Consensus 65 ~Gv~~~~~~~~f~~s~~~~-~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gv 143 (509)
T KOG2504|consen 65 FGLLFEELMDYFGSSSSQI-AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGV 143 (509)
T ss_pred ehhhHHHHHHHhCCCccHH-HHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3456788888998887775 99999999999999999999999999999999999999999888 777999988855 8
Q ss_pred HHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhh
Q psy16660 194 ISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERS 272 (594)
Q Consensus 194 l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~ 272 (594)
+.|+| +..+.+....+..+++ ++|+.+.|+
T Consensus 144 i~G~G~~~~~~paiviv~~YF~-kkR~lA~Gi------------------------------------------------ 174 (509)
T KOG2504|consen 144 IGGLGLGLIYLPAVVILGTYFE-KKRALATGI------------------------------------------------ 174 (509)
T ss_pred HhhccchhhhcchhhhhhhHhH-HHHHHHHhh------------------------------------------------
Confidence 88888 6666677777776664 789999998
Q ss_pred hhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhc-------------
Q psy16660 273 LAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVR------------- 339 (594)
Q Consensus 273 ~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~------------- 339 (594)
...+.++|.++-|.+..++.+.+|||..+++.+.+.+-..+.....-|...+.++.
T Consensus 175 -----------a~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~ 243 (509)
T KOG2504|consen 175 -----------AVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVE 243 (509)
T ss_pred -----------hhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhcccccccc
Confidence 88899999999999999999999999999999988776666655555522211000
Q ss_pred ---------c-C-CCCCC-------------CCccccCCchhhH----hhhccchhHHHHHHHHHHHHHhhhhHHHHHHH
Q psy16660 340 ---------Q-A-SWGGA-------------PISWEQADPFASL----RKVGKDQTILMLCVTVFLSYLPEAGQYSCLFV 391 (594)
Q Consensus 340 ---------~-~-~~~~~-------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (594)
. . +.... +.+++.......+ .++++++.++.+.+...+..+.+.....+++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~ 323 (509)
T KOG2504|consen 244 STPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPS 323 (509)
T ss_pred ccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00000 0000000111112 35678999999999999999999999999999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-
Q psy16660 392 YLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLG--AKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA- 468 (594)
Q Consensus 392 ~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~- 468 (594)
|.++ .|.+..+...++++.++..++++++.|++.|+.. ++.+..++++..+++.+.+.+.++.+.++...+++|+.
T Consensus 324 ~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~ 402 (509)
T KOG2504|consen 324 YAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCV 402 (509)
T ss_pred HHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9985 6999999999999999999999999999999987 45566677777888888888889999999999999999
Q ss_pred hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCC
Q psy16660 469 SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPG 548 (594)
Q Consensus 469 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (594)
+.........+.+.++.++...+.|+......++..+||++.|.+.|..|. |.
T Consensus 403 g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~---------------------------Y~ 455 (509)
T KOG2504|consen 403 GSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGN---------------------------YD 455 (509)
T ss_pred HHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCC---------------------------ee
Confidence 777777777899999999999999999999999999999999999988762 23
Q ss_pred hhHHHHHHHHHHHHHHHHhcc
Q psy16660 549 PPFVFGALLVIAALLVATFIP 569 (594)
Q Consensus 549 ~~f~~~~~~~~~~~~~~~~~~ 569 (594)
..|..++++.+++....+..+
T Consensus 456 ~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 456 HAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eehhhcChHHHHHHHHHHHhH
Confidence 678888877777776666665
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=210.65 Aligned_cols=357 Identities=15% Similarity=0.191 Sum_probs=251.4
Q ss_pred CCchhHHHHHHHHHHHHhhhhhhhHHHHHHhh-CCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHH--H
Q psy16660 96 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRT-FPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV--F 172 (594)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~--~ 172 (594)
++..+......++.++.++. ..|++|.+.++ .|.+..+. |.+.++..+...+.+|+.|.++||.|.||-++..+ +
T Consensus 6 ~~~~~~~s~~~f~~Ff~~gi-~~pF~~iWL~~~~GLs~~~i-G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l 83 (412)
T PF01306_consen 6 NKNYWWLSLFYFFYFFIWGI-FLPFFPIWLTQVAGLSGTEI-GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAIL 83 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH-HHHHHHHHHccccCCCHHHH-HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHH
Confidence 45566777788888999999 89999999987 56665555 99999999999999999999999999666544332 2
Q ss_pred Hhhhhh-hh--hc----chHH-HHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHH
Q psy16660 173 VTCLPI-PL--MT----LDTW-WFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFA 243 (594)
Q Consensus 173 ~~~i~~-~~--~~----~~~~-~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 243 (594)
....+. +. +. .|.+ ..+++-+..|+. .+..++..+++.+... +
T Consensus 84 ~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr--~-------------------------- 135 (412)
T PF01306_consen 84 LLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSR--R-------------------------- 135 (412)
T ss_dssp HHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHH--H--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH--H--------------------------
Confidence 222221 11 11 1221 112222222332 3334444444444321 1
Q ss_pred HhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Q psy16660 244 MISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDV 323 (594)
Q Consensus 244 ~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~ 323 (594)
.+..+|- .....++|.+++..++|.+.+ .+.+..||+....+++..
T Consensus 136 ---------------------------~~feYG~------~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~ 181 (412)
T PF01306_consen 136 ---------------------------NGFEYGR------ARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILL 181 (412)
T ss_dssp ---------------------------HSS-HHH------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------hcCCcch------HHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHH
Confidence 1122233 777888999999999999987 577888888776666655
Q ss_pred HHhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhC---CC
Q psy16660 324 FFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMG---FD 400 (594)
Q Consensus 324 ~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s 400 (594)
++.++..|+.+++.... +.+ ...+++...++..+++|+|++|.+.+........+.......+.|....++ .+
T Consensus 182 lll~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g 257 (412)
T PF01306_consen 182 LLLLLLKPDVPPQAEVA-DAL---GAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQG 257 (412)
T ss_dssp HHHHSS---SSSSS-SS-TTS---SS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHcCCcCchhhhhh-ccc---ccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 55454444433221111 100 011122234566788899999999888877777777777777888776432 23
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHH
Q psy16660 401 EVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALV 479 (594)
Q Consensus 401 ~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~ 479 (594)
....|++.+..-+..++...+.+++.+|+|.|+.++++..++++-.++.++.++++...+.-.+.++. +.......-++
T Consensus 258 ~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI 337 (412)
T PF01306_consen 258 NQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYI 337 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578899999999999999999999999999999999999999999999999999999999999998 88999999999
Q ss_pred hhcCCCccchHHHHHH-HHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 480 SMHSDADRQGLVQGMV-TGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 480 ~~~~p~~~~g~~~g~~-~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
.+.+|++..++.+.+. +...++|..+.+.+.|.++|+.|++
T Consensus 338 ~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~ 379 (412)
T PF01306_consen 338 TAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQ 379 (412)
T ss_dssp HHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcH
Confidence 9999999999999985 6889999999999999999999976
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-22 Score=218.14 Aligned_cols=337 Identities=18% Similarity=0.222 Sum_probs=247.8
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHH
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISI 194 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l 194 (594)
....++.+..+++.++. . .|+.+...++..++.++.|+++|.||||..++.+.++.++|.+. .+.|...++++..+
T Consensus 63 ~a~~l~~I~~diG~~~~-~-~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l 140 (599)
T PF06609_consen 63 PASILPYINADIGGSDN-W-SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVL 140 (599)
T ss_pred cHHHHHHHHHhcCCCcc-c-hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHH
Confidence 35667888888887643 4 89999999999999999999999999999999999999999887 56699999999999
Q ss_pred HHHHhHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhh
Q psy16660 195 SGVFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLA 274 (594)
Q Consensus 195 ~Gi~~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~ 274 (594)
.|+|.+........++|..|.+.|....++
T Consensus 141 ~GvgaG~~~~~~~~isEl~p~k~R~~~~~~-------------------------------------------------- 170 (599)
T PF06609_consen 141 YGVGAGVQELAALAISELVPNKWRGLGLAI-------------------------------------------------- 170 (599)
T ss_pred HHHhhHHHHHHHHHHHHhcccchhhhHhHH--------------------------------------------------
Confidence 999976666677779999999888776665
Q ss_pred hcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhe-eccCCCchhhc-cCCCC--------
Q psy16660 275 YGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILV-AVPESLPEKVR-QASWG-------- 344 (594)
Q Consensus 275 ~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~-~l~e~~~~~~~-~~~~~-------- 344 (594)
.....-.....+|.++..+..+.+|||.|++..++..+.+++..+ +.|.+.+..+. +.+..
T Consensus 171 ---------~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~ 241 (599)
T PF06609_consen 171 ---------ASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDW 241 (599)
T ss_pred ---------HHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhH
Confidence 444444444567777777666679999999999887777665443 34433221111 10000
Q ss_pred --------------------CC-CCccc--------------------------cCCchhhHhhhccc-hhHHHHHHHHH
Q psy16660 345 --------------------GA-PISWE--------------------------QADPFASLRKVGKD-QTILMLCVTVF 376 (594)
Q Consensus 345 --------------------~~-~~~~~--------------------------~~~~~~~~~~~~~~-~~~~~~~~~~~ 376 (594)
+. ..+|+ .++|..+.+ ++|+ |.+...+++.+
T Consensus 242 IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~-Lf~~~r~~~~~lvi~f 320 (599)
T PF06609_consen 242 IGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHR-LFKDRRGFAALLVISF 320 (599)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHH-HhccchHHHHHHHHHH
Confidence 00 12221 124444544 4465 55666667777
Q ss_pred HHHHhhhhHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHhh-
Q psy16660 377 LSYLPEAGQYSCLFVYLKLVMGFDEV---HVAVFIAVIGTLSVSAQIILGCLMNVLGA-KHTIIIGLVFEMLQLMWYGF- 451 (594)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~g~s~~---~~g~~~~~~~i~~~~~~~~~g~l~dr~g~-~~~l~~~~~~~~i~~~~~~~- 451 (594)
+....++....++|......++-++. ..++.....+++..++..+.+.+..++++ |+.++++.+++.+++.++..
T Consensus 321 i~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~ 400 (599)
T PF06609_consen 321 ISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV 400 (599)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc
Confidence 77777777778888888887776653 56788888899999999999999988876 55556777676665555544
Q ss_pred -hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16660 452 -GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFY 515 (594)
Q Consensus 452 -~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~ 515 (594)
.++....+...++.|++ +..........+-..|+++.|++.|+..+.+.+|+.+|..++..++.
T Consensus 401 ~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~ 466 (599)
T PF06609_consen 401 RPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFT 466 (599)
T ss_pred cCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 23444455666777777 66666666777778899999999999999999999999999987764
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-21 Score=207.59 Aligned_cols=389 Identities=19% Similarity=0.149 Sum_probs=264.0
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhc----ccCchhhHHHH-HH
Q psy16660 98 SVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSD----LWGRKLFLLIT-VF 172 (594)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsD----r~Grr~~l~~~-~~ 172 (594)
++..+..+.+...+++++ ..+.++.|.++++.+.... +++..+..+...+.+|+.|+++| |+||||+++++ .+
T Consensus 5 ~li~~~~~~~Giq~~~~l-~~~~l~~yl~~lg~~~~~~-~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~ 82 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWAL-QLSLLTPYVQELGIPHAWA-SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAA 82 (477)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHH
Confidence 345556666667778888 8899999999998876655 99999999999999999999999 59999997764 44
Q ss_pred Hhhhhhhh--hcchHH-----------------HHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHH
Q psy16660 173 VTCLPIPL--MTLDTW-----------------WFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKII 232 (594)
Q Consensus 173 ~~~i~~~~--~~~~~~-----------------~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~ 232 (594)
...++..+ ++.+.+ .++++-.+..++ ....++..++++|.+|+++|.
T Consensus 83 ~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~------------- 149 (477)
T TIGR01301 83 LVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR------------- 149 (477)
T ss_pred HHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH-------------
Confidence 44444443 222322 112222222223 233444455555555544331
Q ss_pred HhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHH--HHhc----
Q psy16660 233 LMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYL--EKTY---- 306 (594)
Q Consensus 233 ~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l--~~~~---- 306 (594)
+..+++. .+...++|.++|+.++++. .+.+
T Consensus 150 --------------------------------------~~~a~~~------~~~~~~lG~ilg~~~g~~~~~~~~~~~~~ 185 (477)
T TIGR01301 150 --------------------------------------TRIANAY------FSFFMAIGNVLGYAAGAYSGLYKIFPFTK 185 (477)
T ss_pred --------------------------------------HHHHHHH------HHHHHHHHHHHHHHHHHHHhHHHhccccc
Confidence 1233444 8889999999999999875 2221
Q ss_pred ---------ChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCC--CCccccCCchhhH-hhhcc-chhHHHHHH
Q psy16660 307 ---------SLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGA--PISWEQADPFASL-RKVGK-DQTILMLCV 373 (594)
Q Consensus 307 ---------gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~-~~~~~~~~~ 373 (594)
+.+..|++.++..+++.++..+..||.+..++++.+.++. ..+.+....++++ +.+.+ .|.++.+++
T Consensus 186 ~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~ 265 (477)
T TIGR01301 186 TEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAFKYLPRPVWILLL 265 (477)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHHHHCCHHHHHHHH
Confidence 6788999999988888888888899976422211100000 0000011111111 11111 467899999
Q ss_pred HHHHHHHhhhhHHHHHHHHHH-HHhCCChh------HH---H-HHHHHHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHH
Q psy16660 374 TVFLSYLPEAGQYSCLFVYLK-LVMGFDEV------HV---A-VFIAVIGTLSVSAQIILGCLMNVLGA-KHTIIIGLVF 441 (594)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~------~~---g-~~~~~~~i~~~~~~~~~g~l~dr~g~-~~~l~~~~~~ 441 (594)
..++.++++..+..+...|.. ++|+.++. +. | +....+++...+.+++..++.+|+|+ |+...++.++
T Consensus 266 vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~ 345 (477)
T TIGR01301 266 VTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNII 345 (477)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 999999999888888877765 46664431 11 2 33445556666777888999999985 6666888888
Q ss_pred HHHHHHHHhhhhh---------------------HHHHHHHHHHHHHh-hchHhHHHHHHhhcCCC--ccchHHHHHHHH
Q psy16660 442 EMLQLMWYGFGSQ---------------------MWMMWAAGILASLA-SITYPAISALVSMHSDA--DRQGLVQGMVTG 497 (594)
Q Consensus 442 ~~i~~~~~~~~~~---------------------~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~ 497 (594)
.+++++...+.++ .+..++...+.|+. ...+...++++++..++ +..|..+|+.|.
T Consensus 346 ~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~ 425 (477)
T TIGR01301 346 LAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNL 425 (477)
T ss_pred HHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHH
Confidence 8888777765432 25666777778888 88889999999999984 566999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHh-ccCc
Q psy16660 498 MRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATF-IPES 571 (594)
Q Consensus 498 ~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~ 571 (594)
...+.+.+.....|.+.+.+|.+ ....+.++++.++++.+..++ +|+.
T Consensus 426 ~I~lpQii~sl~~g~~~~~~g~~--------------------------~~~~~~~~gv~~~~aa~~~~~~~~~~ 474 (477)
T TIGR01301 426 AIVIPQIIVSLGSGPWDQLFGGG--------------------------NLPAFVVGAVAAFVSGLLALILLPRP 474 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC--------------------------CeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999977777643 236788888877777666554 4444
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-22 Score=218.92 Aligned_cols=356 Identities=15% Similarity=0.155 Sum_probs=243.4
Q ss_pred CCchhHHHHHHHHHHHHhhhhhhhHHHHHH-hhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcc-cCchhhHHHHHHH
Q psy16660 96 EPSVYHALVVIFLEFFAWGLLTMPIISVLN-RTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL-WGRKLFLLITVFV 173 (594)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr-~Grr~~l~~~~~~ 173 (594)
++.++.++...+...+++.. ..+.++.|. ++++.+.... +++.+.+.....+..++.|+++|| +||||+++++.++
T Consensus 13 p~~~~~~~~~~~~er~~~y~-~~~~l~~yl~~~lg~~~~~a-~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~ 90 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYG-VQGILAVFFVKQLGFSQEQA-FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIV 90 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHH
Confidence 45567777777888888777 566666664 5566665555 899999998888889999999999 9999999999999
Q ss_pred hhhhhhh--hcchHH-HHHHHHHHHHHH-hHHHHHHHHHhhccccccc--ccchhchhHHHHHHHHhhhhhhhHHHHhhh
Q psy16660 174 TCLPIPL--MTLDTW-WFFAMISISGVF-AVTFSVVFAYVADVTEEHE--RSLAYGLKFIALKIILMTLDTWWFFAMISI 247 (594)
Q Consensus 174 ~~i~~~~--~~~~~~-~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~--r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 247 (594)
+.++.+. ++.+.. .++++|+++|+| +...+...+++.|.+|+++ |++++++
T Consensus 91 ~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~----------------------- 147 (489)
T PRK10207 91 LAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTL----------------------- 147 (489)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhH-----------------------
Confidence 8888766 333333 355799999998 5567788899999998764 4667777
Q ss_pred ccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhh
Q psy16660 248 SGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFIL 327 (594)
Q Consensus 248 ~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~ 327 (594)
+..+.++|..+||.+++++.++.|||+.|++.++..++ .++.+
T Consensus 148 ------------------------------------~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~-~~~~~ 190 (489)
T PRK10207 148 ------------------------------------FYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLII-ALLVY 190 (489)
T ss_pred ------------------------------------HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999987653333 33333
Q ss_pred eeccCCCchh-----hccCCCCCCCC------------c--cccCCch-------------------hhHhhhccchhHH
Q psy16660 328 VAVPESLPEK-----VRQASWGGAPI------------S--WEQADPF-------------------ASLRKVGKDQTIL 369 (594)
Q Consensus 328 ~~l~e~~~~~-----~~~~~~~~~~~------------~--~~~~~~~-------------------~~~~~~~~~~~~~ 369 (594)
...++..++. +++.|..+... . .+..... ....+..|+|.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~r~~~ 270 (489)
T PRK10207 191 FACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLDKTGRNKMFV 270 (489)
T ss_pred HHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3233221111 10111100000 0 0000000 0001223444443
Q ss_pred HHHH--HHHHHHHhhhhHHHHHHHHHHHHhCCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH-------HHH
Q psy16660 370 MLCV--TVFLSYLPEAGQYSCLFVYLKLVMGFDE----VHVAVFIAVIGTLSVSAQIILGCLMNVLGAKH-------TII 436 (594)
Q Consensus 370 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~s~----~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~-------~l~ 436 (594)
...+ ...+.+..+......++.|.++..+.+. .....+.....+..++..++.+++.||+++|+ .+.
T Consensus 271 ~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~ 350 (489)
T PRK10207 271 AFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFT 350 (489)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 3322 2444455555565777888875333211 12344455566667778888899999999886 366
Q ss_pred HHHHHHHHHHHHHh-----h-----hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhH
Q psy16660 437 IGLVFEMLQLMWYG-----F-----GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGL 505 (594)
Q Consensus 437 ~~~~~~~i~~~~~~-----~-----~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~l 505 (594)
+|+++.+++++.+. . ..+.|..+...++.++| .+..+...+++.+..|++.+|.++|+.+...++|+.+
T Consensus 351 ~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~l 430 (489)
T PRK10207 351 LGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLL 430 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777765331 1 12456677788889999 8889999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy16660 506 GPAMFGLI 513 (594)
Q Consensus 506 g~~~~g~l 513 (594)
+..+....
T Consensus 431 g~~l~~~~ 438 (489)
T PRK10207 431 GGYVATFT 438 (489)
T ss_pred HHHHHHHh
Confidence 98777654
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=220.60 Aligned_cols=347 Identities=12% Similarity=0.149 Sum_probs=233.1
Q ss_pred HHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhc----ccCchhh-HHHHHHHhhhhhhh-
Q psy16660 107 FLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSD----LWGRKLF-LLITVFVTCLPIPL- 180 (594)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsD----r~Grr~~-l~~~~~~~~i~~~~- 180 (594)
+...+.++. ..+.++.|..+.-+.+...+|.+..+..+..++..|+.|.++| |+||||. ++++.+..+++..+
T Consensus 16 ~~~~~~~~~-~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~ll 94 (473)
T PRK10429 16 FGKDFAIGI-VYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLL 94 (473)
T ss_pred hHHhHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHH
Confidence 334444455 5676777766653444445599999999999999999999999 6798554 66676666666443
Q ss_pred hc-c------hHHHHHHHHHHHHHH-hHHHHHHHHHhhccc-ccccccchhchhHHHHHHHHhhhhhhhHHHHhhhcccc
Q psy16660 181 MT-L------DTWWFFAMISISGVF-AVTFSVVFAYVADVT-EEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVF 251 (594)
Q Consensus 181 ~~-~------~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~-~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 251 (594)
+. + .++++++..++.+++ +....+..++..|+. +++||.+..++
T Consensus 95 f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~--------------------------- 147 (473)
T PRK10429 95 FSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPY--------------------------- 147 (473)
T ss_pred HcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHH---------------------------
Confidence 32 1 133444455555555 444445566666666 35666665554
Q ss_pred chhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHH-------hcChHHHHHHHHHHHHHHHH
Q psy16660 252 AVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEK-------TYSLSLVVAVATAVAILDVF 324 (594)
Q Consensus 252 ~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~-------~~gw~~~f~~~~~~~ll~~~ 324 (594)
.....++|..+++.+...+.+ ..+|+....+.+++.++..+
T Consensus 148 --------------------------------~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~ 195 (473)
T PRK10429 148 --------------------------------PRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTI 195 (473)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 444455554444433332211 23577777777777776666
Q ss_pred HhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHH
Q psy16660 325 FILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHV 404 (594)
Q Consensus 325 ~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 404 (594)
..++..||++.++..+.+ +.++.+..+.++.+++||.++.+++..++..........+.++|.+...+ +....
T Consensus 196 ~~~~~~~e~~~~~~~~~~------~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~ 268 (473)
T PRK10429 196 ITLRNVHEVYSSDNQVSA------EGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLF 268 (473)
T ss_pred HHHcCceecCCccccccc------cccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHH
Confidence 666667775422111100 00122344556667799999988888887777666666666656655434 55667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHh-hchHhHHHHH
Q psy16660 405 AVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGF-----GSQMWMMWAAGILASLA-SITYPAISAL 478 (594)
Q Consensus 405 g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~g~~-~~~~~~~~~~ 478 (594)
+.+.....++.+++.++.+++.||+|+|+.+..+..+.+++.+.+.. ..+.+..++..++.+++ +..++...++
T Consensus 269 ~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am 348 (473)
T PRK10429 269 PYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIM 348 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888999999999999999999998887766655544332 33455666666777787 7788888999
Q ss_pred HhhcCC-------CccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 479 VSMHSD-------ADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 479 ~~~~~p-------~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
++|..| .+..|..+|...+...++..+++.+.|.+.+..|++
T Consensus 349 ~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~ 397 (473)
T PRK10429 349 VADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGYV 397 (473)
T ss_pred HhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999976 344677999999999999999999999999999986
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=217.00 Aligned_cols=367 Identities=42% Similarity=0.732 Sum_probs=294.6
Q ss_pred cccCCchhHHHHHHHHHHHHhhhhh---hhHHHHHHhhCCCchhHHHHHHHHHH----HHHHHHHhhHhhhhhcccCchh
Q psy16660 93 GIGEPSVYHALVVIFLEFFAWGLLT---MPIISVLNRTFPDHTFLMNGLIMGIK----GFLSFLSAPLIGALSDLWGRKL 165 (594)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~s~~----~l~~~l~~~~~G~lsDr~Grr~ 165 (594)
..+....+.+....++..+++++.. .+..+.....++.......+...... .+...+.++..|.++||||||.
T Consensus 14 ~~~~~~~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~ 93 (463)
T KOG2816|consen 14 VIRLASMRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKV 93 (463)
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhh
Confidence 3344556777888899999988822 34444444445444444445555555 7888999999999999999999
Q ss_pred hHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHh
Q psy16660 166 FLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMI 245 (594)
Q Consensus 166 ~l~~~~~~~~i~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 245 (594)
.+........+..++. -...||++...
T Consensus 94 ~L~~~~~~~~l~~~~~-----------------------------------------------------~~~~~~~~~~~ 120 (463)
T KOG2816|consen 94 VLLLPLFGTILPALCL-----------------------------------------------------LFQGYWFFLLL 120 (463)
T ss_pred hHHHHHHHHHHhHHHH-----------------------------------------------------HHHHHHHhhhc
Confidence 9998887766553321 01127888888
Q ss_pred hhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Q psy16660 246 SISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFF 325 (594)
Q Consensus 246 ~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~ 325 (594)
.+.|..++..+.+++|++|.+++++|++.+|+ .+..+..+..++|.+++.+.+..|.-.+|.+..+..++..+.
T Consensus 121 ~l~g~~~~~~s~~~a~vadis~~~~R~~~~gl------l~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y 194 (463)
T KOG2816|consen 121 GLSGGFSAIFSVGFAYVADISSEEERSSSIGL------LSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLY 194 (463)
T ss_pred ccccchhhhhhhhhhheeeccchhHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred hheeccCCCchhhccC-CC----CCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHhCC
Q psy16660 326 ILVAVPESLPEKVRQA-SW----GGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYS-CLFVYLKLVMGF 399 (594)
Q Consensus 326 ~~~~l~e~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~ 399 (594)
..+++||+..++++.. +. .+....++..+.....+....+|..+.++...++.......... ..+.|+...++|
T Consensus 195 ~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w 274 (463)
T KOG2816|consen 195 MLLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGW 274 (463)
T ss_pred HhhccccccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCc
Confidence 9999999877655541 11 11222233344445555555566677767766666665554333 557788889999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH-HHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHhHHHHH
Q psy16660 400 DEVHVAVFIAVIGTLSVSAQIILG-CLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLASITYPAISAL 478 (594)
Q Consensus 400 s~~~~g~~~~~~~i~~~~~~~~~g-~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 478 (594)
+..+.+.+.+..+....++..+.. .+...++.++.+..|+....+..+++++.++.|.++....+.++.....|...+.
T Consensus 275 ~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~~~pa~~s~ 354 (463)
T KOG2816|consen 275 NKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGIVFPAIRAF 354 (463)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcchhHHHHhH
Confidence 999999888888888887777665 7888889999999999999999999999999999999999988889999999999
Q ss_pred HhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy16660 479 VSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 479 ~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g 518 (594)
.+..++++++|+++++...+..+...++|.+.+.++..+-
T Consensus 355 ~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 355 ASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTL 394 (463)
T ss_pred HHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987654
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=217.38 Aligned_cols=331 Identities=15% Similarity=0.126 Sum_probs=226.1
Q ss_pred hhHHHH-HHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcc----cCchhh-HHHHHHHhhhhhhh-h-cc------
Q psy16660 118 MPIISV-LNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL----WGRKLF-LLITVFVTCLPIPL-M-TL------ 183 (594)
Q Consensus 118 ~~~~~~-~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr----~Grr~~-l~~~~~~~~i~~~~-~-~~------ 183 (594)
...++. |.+.++.+... .|.+..+..+..++..|+.|+++|| +||||. ++.+.+..+++..+ + .+
T Consensus 29 ~~~l~~~~t~~~gls~~~-~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~ 107 (444)
T PRK09669 29 MLFLAYFYTDVFGLSAAI-MGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATG 107 (444)
T ss_pred HHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcch
Confidence 334444 45556666554 5999999999999999999999998 888555 55565555444433 2 21
Q ss_pred hHHHHHHHHHHHHHH-hHHHHHHHHHhhccc-ccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhh
Q psy16660 184 DTWWFFAMISISGVF-AVTFSVVFAYVADVT-EEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAY 261 (594)
Q Consensus 184 ~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~-~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~ 261 (594)
..+++++..++.+++ +....+..++.+|+. +++||.+..++
T Consensus 108 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~------------------------------------- 150 (444)
T PRK09669 108 KIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSW------------------------------------- 150 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHH-------------------------------------
Confidence 245566666666665 544455667777776 35667766555
Q ss_pred hccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHH-------hcChHHHHHHHHHHHHHHHHHhheeccCCC
Q psy16660 262 VADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEK-------TYSLSLVVAVATAVAILDVFFILVAVPESL 334 (594)
Q Consensus 262 i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~-------~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~ 334 (594)
......+|..+++.+...+.. ..+|+..+.+.+++.++..++.++..+|+.
T Consensus 151 ----------------------r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~ 208 (444)
T PRK09669 151 ----------------------RFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERY 208 (444)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEec
Confidence 555555655555544333222 347888888888777776666666566643
Q ss_pred chhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy16660 335 PEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTL 414 (594)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~ 414 (594)
.+++ + ++.+..++++..+|||.++.+++..++.............+|.+..++ ++...+.+.....+.
T Consensus 209 ~~~~-~----------~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~ 276 (444)
T PRK09669 209 TPEV-D----------NSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIA 276 (444)
T ss_pred CCCC-c----------CCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHH
Confidence 2211 0 112345677888899999988887777666655545545555555444 334445555566677
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH-HHhh-hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCC------
Q psy16660 415 SVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLM-WYGF-GSQMWMMWAAGILASLA-SITYPAISALVSMHSDA------ 485 (594)
Q Consensus 415 ~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~-~~~~-~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~------ 485 (594)
.+++.++.+++.||+|+|+.+..+.++.+++.+ ++.. .++.+..++..++.+++ +...+..+++++|..|.
T Consensus 277 ~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G 356 (444)
T PRK09669 277 GLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSG 356 (444)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 778889999999999999998888766554333 2222 34566667777788888 78889999999998862
Q ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 486 -DRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 486 -~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
+..|..+|..++..++|..+++.+.|.+++..|++
T Consensus 357 ~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 357 RRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34577889999999999999999999999999986
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-23 Score=219.54 Aligned_cols=331 Identities=13% Similarity=0.096 Sum_probs=243.8
Q ss_pred hHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHHHH
Q psy16660 119 PIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISISG 196 (594)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l~G 196 (594)
+.+.-+.++.+....+. +.+.+++.+++.++.+++|.+.||+.-.+.+....+...+-.++ ...|++.+++.|++.|
T Consensus 67 a~l~g~~edl~~~~~~l-~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llG 145 (495)
T KOG2533|consen 67 ASLSGLKEDLKLVGNQL-GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLG 145 (495)
T ss_pred HHHcCCccccchhhhhh-hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333446666666666 99999999999999999999999999666665555444333322 4569999999999999
Q ss_pred HH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhhh
Q psy16660 197 VF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAY 275 (594)
Q Consensus 197 i~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~ 275 (594)
+. ++.+|....++..|+.++||+..+|+
T Consensus 146 l~es~~wP~~~~~lg~wy~~~e~g~r~~~--------------------------------------------------- 174 (495)
T KOG2533|consen 146 LFESGGWPGVVAILGNWYGKSERGLRMGI--------------------------------------------------- 174 (495)
T ss_pred HHhcccchHHHHHHHhhcChhhhhhhHHH---------------------------------------------------
Confidence 98 88999999999999999999999999
Q ss_pred cccccccchhHHHhhHHHHHHHHHHHHHH------hcChHHHHHHHHHHHHHHHHHhheeccCCCchhh---ccC-----
Q psy16660 276 GLSFSFSQVSATFAASMVFSPALGAYLEK------TYSLSLVVAVATAVAILDVFFILVAVPESLPEKV---RQA----- 341 (594)
Q Consensus 276 g~~~~~~~~~~~~~~g~~igp~l~~~l~~------~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~---~~~----- 341 (594)
+.+..++|.++|.+++..+.+ ..||||.|++.+++.++..+++++++|+.|.+.. +++
T Consensus 175 --------~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~ 246 (495)
T KOG2533|consen 175 --------WYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVV 246 (495)
T ss_pred --------HHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHH
Confidence 999999999999999988643 4689999999999999999888899998875211 000
Q ss_pred -CCCCC-CCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q psy16660 342 -SWGGA-PISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQ 419 (594)
Q Consensus 342 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~ 419 (594)
+.++. .....++..+..+++.+++|.+|.+.++.++......+..+++|+|+++..|++..++..+.....++.+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~ 326 (495)
T KOG2533|consen 247 ERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGL 326 (495)
T ss_pred HHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHH
Confidence 00000 0111111345778888999999999999999999999999999999999667999999999999999999999
Q ss_pred HHHHHHHHh----hchHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccc-hHHH
Q psy16660 420 IILGCLMNV----LGAKHTIIIGLVF-EMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQ-GLVQ 492 (594)
Q Consensus 420 ~~~g~l~dr----~g~~~~l~~~~~~-~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~-g~~~ 492 (594)
+++|.++|| ..+|........+ ..++...+......+....+.+....+ ....+......++....+.+ -+..
T Consensus 327 i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~ 406 (495)
T KOG2533|consen 327 ILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTV 406 (495)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHH
Confidence 999999999 4555555554433 344444444444344444444433444 55666777777777755433 3334
Q ss_pred HHHHHHHHHHHhHHHHH
Q psy16660 493 GMVTGMRGLCNGLGPAM 509 (594)
Q Consensus 493 g~~~~~~~lg~~lg~~~ 509 (594)
++.....+.++.++|.+
T Consensus 407 ~~~i~~~~s~~~~~~~~ 423 (495)
T KOG2533|consen 407 SAIIDGTGSAGAISGQL 423 (495)
T ss_pred hhhhcchhHHHHhhhhh
Confidence 44444444444444443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=216.30 Aligned_cols=332 Identities=21% Similarity=0.289 Sum_probs=250.4
Q ss_pred HHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhc----ccCchhh-HHHHHHHhhhhhhh-h-c-c-------h
Q psy16660 120 IISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSD----LWGRKLF-LLITVFVTCLPIPL-M-T-L-------D 184 (594)
Q Consensus 120 ~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsD----r~Grr~~-l~~~~~~~~i~~~~-~-~-~-------~ 184 (594)
..+.|.+..+.++... |.+..+..+..++..|+.|.++| |+||||. ++++.+..+++..+ + . + .
T Consensus 24 ~~~f~~~~~gl~~~~~-g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~ 102 (428)
T PF13347_consen 24 LLYFYTDVLGLSPALA-GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK 102 (428)
T ss_pred HHHHHHHHcCCCHHHH-HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence 3444555556665544 99999999999999999999999 7998776 55677777777665 3 2 2 1
Q ss_pred HHHHHHHHHHHHHH-hHHHHHHHHHhhcccc-cccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhh
Q psy16660 185 TWWFFAMISISGVF-AVTFSVVFAYVADVTE-EHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYV 262 (594)
Q Consensus 185 ~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~-~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i 262 (594)
..++.+..++..++ .....+..++..|..+ ++||.+..+.
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~-------------------------------------- 144 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSW-------------------------------------- 144 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHH--------------------------------------
Confidence 22344455555555 4444455566666665 3455555554
Q ss_pred ccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHh-------cChHHHHHHHHHHHHHHHHHhheeccCCCc
Q psy16660 263 ADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKT-------YSLSLVVAVATAVAILDVFFILVAVPESLP 335 (594)
Q Consensus 263 ~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~-------~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~ 335 (594)
-.....+|..+...+...+.+. .+|++..++.+++.++..++..+..||+++
T Consensus 145 ---------------------~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~ 203 (428)
T PF13347_consen 145 ---------------------RMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSV 203 (428)
T ss_pred ---------------------HHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccc
Confidence 5555555555444444443321 169999999999988888888888888222
Q ss_pred hhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Q psy16660 336 EKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLS 415 (594)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~ 415 (594)
+.+++. ++.+..+.++..++||.++.++...++..+.........++|.++.+|.+ ...+.+.....++.
T Consensus 204 ~~~~~~---------~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~ 273 (428)
T PF13347_consen 204 EVTEQE---------KKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVAS 273 (428)
T ss_pred cccccc---------cccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHH
Confidence 211111 12234466788889999999999999988888888888889999888866 56778888889999
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCC-------
Q psy16660 416 VSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGS--QMWMMWAAGILASLA-SITYPAISALVSMHSDA------- 485 (594)
Q Consensus 416 ~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~------- 485 (594)
+++.++.+++.||+|+|+.+..+.++.+++.+++.+.+ +.+..++..++.|++ +..+...+++++|..+.
T Consensus 274 ~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~ 353 (428)
T PF13347_consen 274 IVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGR 353 (428)
T ss_pred HHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCC
Confidence 99999999999999999999999999999988887765 888888899999999 88889999999998873
Q ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccC
Q psy16660 486 DRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDL 521 (594)
Q Consensus 486 ~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~ 521 (594)
++.|..+|+.++..+++..+++.+.+.+.+..|++.
T Consensus 354 r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~ 389 (428)
T PF13347_consen 354 RREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDA 389 (428)
T ss_pred CchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCC
Confidence 457999999999999999999999999999999873
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-21 Score=189.59 Aligned_cols=326 Identities=17% Similarity=0.220 Sum_probs=268.6
Q ss_pred hhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh-hcchHHHHHHHHHH
Q psy16660 116 LTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL-MTLDTWWFFAMISI 194 (594)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~-~~~~~~~l~~~r~l 194 (594)
.+.|.++.+.++++.+.... |+++++..+...+.+|+..+++.|+|.++.+..++++.+++..+ ...+.+.++.+-.+
T Consensus 30 svgPLL~~Ir~~~gls~s~a-GlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~gt~l 108 (395)
T COG2807 30 SVGPLLDEIRQDLGLSFSVA-GLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLGTLL 108 (395)
T ss_pred hhhhhHHHHHHHhcccHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 37899999999999987777 99999999999999999999999999999999999999999988 44478899999999
Q ss_pred HHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhh
Q psy16660 195 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSL 273 (594)
Q Consensus 195 ~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~ 273 (594)
.|.| +......++++-+.+| ++-+..+|+
T Consensus 109 ~G~gIav~nVLLPslIK~~Fp-k~~~~mtgl------------------------------------------------- 138 (395)
T COG2807 109 AGAGIAVINVLLPSLIKRDFP-KRVGLMTGL------------------------------------------------- 138 (395)
T ss_pred HHhhHHHHHHhhhHHHHhhcc-cchhhHHhH-------------------------------------------------
Confidence 9999 6677778999999998 566888888
Q ss_pred hhcccccccchhHHHhhHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCCcccc
Q psy16660 274 AYGLSFSFSQVSATFAASMVFSPALGAYLEKTY-SLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQ 352 (594)
Q Consensus 274 ~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~-gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~ 352 (594)
+....++|..+++.+.-.+.++. |||....+-+.++++.++.. +|...+++... .
T Consensus 139 ----------Ys~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~W---lPq~~r~~~~~-----------~ 194 (395)
T COG2807 139 ----------YSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIW---LPQALREQAAS-----------I 194 (395)
T ss_pred ----------HHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHH---hhhcccccccc-----------c
Confidence 99999999999999998888877 79999999888888866542 34421111110 0
Q ss_pred CCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-h
Q psy16660 353 ADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLG-A 431 (594)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g-~ 431 (594)
.....+-+.++|+|.-|.+.+++.+..+.++....|+|.++.|. |+|+.++|.+.+...+..++..+..+.+.+|.. +
T Consensus 195 ~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~-G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~ 273 (395)
T COG2807 195 ATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDR-GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQ 273 (395)
T ss_pred ccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHc-CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 01112234578999999999999999999999999999999995 999999999999999999999999999999764 5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHh-hchHhHHHHHHhhcC-CCccchHHHHHHHHHHHHHHhHHHH
Q psy16660 432 KHTIIIGLVFEMLQLMWYGFGSQM-WMMWAAGILASLA-SITYPAISALVSMHS-DADRQGLVQGMVTGMRGLCNGLGPA 508 (594)
Q Consensus 432 ~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~l~g~~-~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~lg~~lg~~ 508 (594)
|+.......++.++...+.+.+.. +..+ .+++|+| +..+|...+.+.+.. ++++.+.-.|+.+..+++-.++||.
T Consensus 274 r~~~~~~~~~~l~G~~G~~~~P~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~ 351 (395)
T COG2807 274 RPLVVLALLLMLVGLVGLLLAPGQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPW 351 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhh
Confidence 666666677777777766554432 2222 5888999 889998888777665 4567788999999999999999999
Q ss_pred HHHHHHHHhhc
Q psy16660 509 MFGLIFYMFHV 519 (594)
Q Consensus 509 ~~g~l~~~~g~ 519 (594)
++|++.|..|.
T Consensus 352 l~G~lhDa~gs 362 (395)
T COG2807 352 LFGFLHDATGS 362 (395)
T ss_pred hHhHHHHhcCC
Confidence 99999999874
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-22 Score=217.90 Aligned_cols=355 Identities=15% Similarity=0.147 Sum_probs=246.4
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhc
Q psy16660 135 MNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISISGVF-AVTFSVVFAYVAD 211 (594)
Q Consensus 135 ~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~ 211 (594)
..+++.+...++..++++++|+++|++|||+.++++.+++.++.++ ++.|+++++++|+++|+| ++...+...+++|
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE 169 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE 169 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence 3489999999999999999999999999999999999999998887 677999999999999998 6666788999999
Q ss_pred ccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhH
Q psy16660 212 VTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAAS 291 (594)
Q Consensus 212 ~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g 291 (594)
+.|++.||...+. .+....+|
T Consensus 170 iap~~~RG~l~~~-----------------------------------------------------------~~l~~~~G 190 (513)
T KOG0254|consen 170 IAPAHIRGTLVSL-----------------------------------------------------------YQLFITIG 190 (513)
T ss_pred cCChhhhHHHHHH-----------------------------------------------------------HHHHHHHH
Confidence 9999999999988 88888888
Q ss_pred HHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCC--------C-CccccCCch-----
Q psy16660 292 MVFSPALGAYLEKT-YSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGA--------P-ISWEQADPF----- 356 (594)
Q Consensus 292 ~~igp~l~~~l~~~-~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~--------~-~~~~~~~~~----- 356 (594)
..+|..++....+. ++||..+.+..+.+++..+. .+++||+|+...++.+..++ . .+++.....
T Consensus 191 i~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~ 269 (513)
T KOG0254|consen 191 ILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKI 269 (513)
T ss_pred HHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 88886555554332 48999999999888887777 77799998765543322211 0 001000000
Q ss_pred -----------h-hHhhhccchhHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHH
Q psy16660 357 -----------A-SLRKVGKDQTILMLCVTVFLSYLPE----AGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQI 420 (594)
Q Consensus 357 -----------~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~ 420 (594)
+ .++++++........+...+..+.+ .....+.+.+++. .|.+... .......++..+++..
T Consensus 270 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-~g~~~~~-~~~~~~~~~v~~~~t~ 347 (513)
T KOG0254|consen 270 KLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS-AGLKSDT-FLASIILGVVNFLGTL 347 (513)
T ss_pred HHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh-cCCCCch-HHHHHHHHHHHHHHHH
Confidence 0 1222222112222222333322222 2333344444444 3555333 4445556666777888
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhh------------HHHHHHHHHHHHHh--hchHhHHHHHHhhcCCCc
Q psy16660 421 ILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQ------------MWMMWAAGILASLA--SITYPAISALVSMHSDAD 486 (594)
Q Consensus 421 ~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~p~~ 486 (594)
+...+.||+|||++++.+...+.+++++++.... .+..++..+++-.. ....+..+.+.+|.+|.+
T Consensus 348 ~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~ 427 (513)
T KOG0254|consen 348 VATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLR 427 (513)
T ss_pred HHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHh
Confidence 8899999999999999999999999887774311 22333333333222 445567778889999999
Q ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHH-HHH
Q psy16660 487 RQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAAL-LVA 565 (594)
Q Consensus 487 ~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~ 565 (594)
.|+++.++......+...+-...+..+.+..+. ....+.+.++..+... .+.
T Consensus 428 ~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~---------------------------~~~f~~f~~~~~~~~~~fv~ 480 (513)
T KOG0254|consen 428 LRSKGASLAVAVNWLWNFLISFFFPFITEALGI---------------------------GGTFGYFGGICLLSLIIFVF 480 (513)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------------------cchHHHHHHHHHHHHHHHhe
Confidence 999999999999999988887777777665431 1134455555555555 567
Q ss_pred HhccCcccccCcC
Q psy16660 566 TFIPESIVTRSVG 578 (594)
Q Consensus 566 ~~~~~~~~~~~~~ 578 (594)
+++||++.+..++
T Consensus 481 ~~~pETkg~slee 493 (513)
T KOG0254|consen 481 FFVPETKGLTLEE 493 (513)
T ss_pred EEcccCCCCcHHH
Confidence 7889988776443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=203.80 Aligned_cols=378 Identities=18% Similarity=0.246 Sum_probs=262.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHH-HHhhhhhhh--h-cch-HHHHHHHHHHHHHH-hHHHHHHH
Q psy16660 133 FLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV-FVTCLPIPL--M-TLD-TWWFFAMISISGVF-AVTFSVVF 206 (594)
Q Consensus 133 ~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~-~~~~i~~~~--~-~~~-~~~l~~~r~l~Gi~-~~~~~~~~ 206 (594)
....++..++..+..++..|+.|.++|+-|+||.++... ++..++..+ + ..+ ++...+..++.-++ ........
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445588999999999999999999999999877655543 333333333 2 233 33333344444445 55666778
Q ss_pred HHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccc-h---hhhhhhhhhccccccc
Q psy16660 207 AYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADV-T---EEHERSLAYGLSFSFS 282 (594)
Q Consensus 207 a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~-t---~~~~r~~~~g~~~~~~ 282 (594)
+++.|..+++++.+...- .....-.+|- . ++.+|++.-+.
T Consensus 149 a~LP~la~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~vS~~----- 192 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAARE-------------------------------PSANGNISDSEYEAVDSLTRGRVSGL----- 192 (477)
T ss_pred HHhHhhcCCChhhhhhhh-------------------------------hhccCCCChhhhhhHHHhhhchhHHH-----
Confidence 999999998877322111 0000000000 0 00111222222
Q ss_pred chhHHHhhHHHHHHHHHHHHHH--------hcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCCccccCC
Q psy16660 283 QVSATFAASMVFSPALGAYLEK--------TYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQAD 354 (594)
Q Consensus 283 ~~~~~~~~g~~igp~l~~~l~~--------~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
-.+...+|.++.-++.-.+.. ..+.|..+.+.++..++..+..++.+||+++++..+.... .....-++
T Consensus 193 -G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~--~~~~g~~~ 269 (477)
T PF11700_consen 193 -GWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSS--YLRFGFKR 269 (477)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchh--HHHHHHHH
Confidence 222223344433333333221 2345888888888877777777777888765322111000 00001123
Q ss_pred chhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--
Q psy16660 355 PFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAK-- 432 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~-- 432 (594)
..+.+++..|+|....+++..+++.-....+......|..+++|++..+...+.....+.+++|.++.|++.||+|.|
T Consensus 270 l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~ 349 (477)
T PF11700_consen 270 LWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK 349 (477)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 345667777889999999999999888888999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHH
Q psy16660 433 HTIIIGLVFEMLQLMWYGF--------GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCN 503 (594)
Q Consensus 433 ~~l~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~ 503 (594)
+++..++++..+..+.-.+ .++.|.+++..++.|+. +..++...++.++..|+++.+..+|++.......+
T Consensus 350 ~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss 429 (477)
T PF11700_consen 350 RTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASS 429 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence 7877777666443333333 56778899999999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhccCcccccC
Q psy16660 504 GLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIPESIVTRS 576 (594)
Q Consensus 504 ~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (594)
.+||.++|.+.+..|.. +..+....+++++++++.+.++.+|.+++
T Consensus 430 ~lGPll~g~i~~~tg~~---------------------------r~g~~~l~~lf~~gl~ll~~v~~~~g~~~ 475 (477)
T PF11700_consen 430 WLGPLLFGLITDATGSQ---------------------------RYGFLFLLVLFLIGLILLFFVDVEKGRED 475 (477)
T ss_pred HHHHHHHHHHHHHhCCc---------------------------hhHHHHHHHHHHHHHHHHhhccchhhhhc
Confidence 99999999999998733 26777777888888888887777666554
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=212.82 Aligned_cols=346 Identities=12% Similarity=0.133 Sum_probs=226.8
Q ss_pred HHHHHHhhhhhhhHHHHHHhhC-CCchhHHHHHHHHHHHHHHHHHhhHhhhhhccc----CchhhH-HHHHHHhhhhhhh
Q psy16660 107 FLEFFAWGLLTMPIISVLNRTF-PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW----GRKLFL-LITVFVTCLPIPL 180 (594)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~----Grr~~l-~~~~~~~~i~~~~ 180 (594)
+...+..+. ..++++.|.++. +.+. .++|.+.++..+..++..|+.|+++||. ||||.. +++.+...+...+
T Consensus 18 ~~~~~~~~~-~~~~l~~y~~~~~gl~~-~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~ 95 (448)
T PRK09848 18 VANNFAFAM-GALFLLSYYTDVAGVGA-AAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVL 95 (448)
T ss_pred HHhHHHHHH-HHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHH
Confidence 344445444 556666666655 5554 4559999999999999999999999995 777754 4444433322222
Q ss_pred -hc------c--hHHHHHHHHHHHHHH-hHHHHHHHHHhhcccc-cccccchhchhHHHHHHHHhhhhhhhHHHHhhhcc
Q psy16660 181 -MT------L--DTWWFFAMISISGVF-AVTFSVVFAYVADVTE-EHERSLAYGLKFIALKIILMTLDTWWFFAMISISG 249 (594)
Q Consensus 181 -~~------~--~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~-~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 249 (594)
+. . ..++++...++.+++ +...++..++..+..+ +++|.+..++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~----------------------- 152 (448)
T PRK09848 96 VFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARG----------------------- 152 (448)
T ss_pred HHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHH-----------------------
Confidence 21 1 223344455566666 4444455565555544 456666544400
Q ss_pred ccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHhh
Q psy16660 250 VFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKT--YSLSLVVAVATAVAILDVFFIL 327 (594)
Q Consensus 250 ~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~--~gw~~~f~~~~~~~ll~~~~~~ 327 (594)
.+. .-....++..++|.++...... .+|.....+.+++.++..++..
T Consensus 153 -------------------------~~~------~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~ 201 (448)
T PRK09848 153 -------------------------IAA------SLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICF 201 (448)
T ss_pred -------------------------HHH------HHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 000 0112335555666665543111 1122112233333344333444
Q ss_pred eeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHH
Q psy16660 328 VAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVF 407 (594)
Q Consensus 328 ~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~ 407 (594)
...||+.+++.+ +....+.++.++|||.++...+..++.+..........++|.++.+|.++...++.
T Consensus 202 ~~~~e~~~~~~~------------~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 269 (448)
T PRK09848 202 KSTRENVVRIVA------------QPSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLV 269 (448)
T ss_pred cCcEeccCCCcc------------CCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHH
Confidence 445665322111 11334567788899999998888888888777777777888888888776666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHh-hchHhHHHHHHhhcCC
Q psy16660 408 IAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGS--QMWMMWAAGILASLA-SITYPAISALVSMHSD 484 (594)
Q Consensus 408 ~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p 484 (594)
.....++.+++.++.+++.||+|+|+.+.++.++..++.+++.+.+ +.+..+...++.++| +...+...++.++..|
T Consensus 270 ~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~ 349 (448)
T PRK09848 270 LVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVE 349 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5555677788999999999999999999999888888777665533 456666667778888 7888888999988887
Q ss_pred Cc-------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 485 AD-------RQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 485 ~~-------~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
++ ++|..+|+.++...+|..+++.+.|.+.+..|++
T Consensus 350 ~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~ 392 (448)
T PRK09848 350 YGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYI 392 (448)
T ss_pred hhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 54 4699999999999999999999999999998876
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=227.38 Aligned_cols=341 Identities=17% Similarity=0.207 Sum_probs=251.0
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhhhcc-------------
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL------------- 183 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~~~~------------- 183 (594)
..+.++.+.++++.++.+. |++.+.+.++++++.++.|+++||+|||+.+.++.++++++.++++.
T Consensus 52 ~~~~l~~iek~F~lss~~~-G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~ 130 (633)
T TIGR00805 52 VNSSLTTIERRFKLSTSSS-GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTT 130 (633)
T ss_pred HHhhchhhhhhhCCCCCcc-eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccc
Confidence 7888899999999888877 99999999999999999999999999999999998888888766321
Q ss_pred ----------------------------------------hHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchh
Q psy16660 184 ----------------------------------------DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAY 222 (594)
Q Consensus 184 ----------------------------------------~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~ 222 (594)
.+..++++|+++|+| +..++...+++.|++|+++|++++
T Consensus 131 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~ 210 (633)
T TIGR00805 131 VSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYI 210 (633)
T ss_pred ccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHH
Confidence 134567789999988 667778888888888888888888
Q ss_pred chhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHH
Q psy16660 223 GLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYL 302 (594)
Q Consensus 223 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l 302 (594)
++ +..+..+|..+|+++++++
T Consensus 211 ~i-----------------------------------------------------------~~~~~~iG~~lG~llgg~l 231 (633)
T TIGR00805 211 GI-----------------------------------------------------------LESIAVFGPAFGYLLGSFC 231 (633)
T ss_pred HH-----------------------------------------------------------HHHHHHhhhHHHHHHHHHH
Confidence 88 9999999999999999998
Q ss_pred HHhc----------------------ChHHHHHHHHHHHHHHHHHhheeccCCCchhhc--cCCCCCC-------CCccc
Q psy16660 303 EKTY----------------------SLSLVVAVATAVAILDVFFILVAVPESLPEKVR--QASWGGA-------PISWE 351 (594)
Q Consensus 303 ~~~~----------------------gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~--~~~~~~~-------~~~~~ 351 (594)
.+.+ +|+..|++.+++.++..+.. +.+|++.++..+ +.+..+. +..+.
T Consensus 232 ~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l-~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (633)
T TIGR00805 232 LQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF-FFFPKALPKEGKRVNVDVHETEKLEKSEDKSRK 310 (633)
T ss_pred HhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HhCccccCCcccccchhhhhhhcccccccccch
Confidence 7643 27778888887777765543 445654332111 0000000 00000
Q ss_pred -----cCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHH-HHHHHHHHHHHH
Q psy16660 352 -----QADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGT-LSVSAQIILGCL 425 (594)
Q Consensus 352 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i-~~~~~~~~~g~l 425 (594)
.++....++.+++||.++...+..++......+..+++|.|+++.+|+++.+++++.....+ +.+++.+++|++
T Consensus 311 ~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l 390 (633)
T TIGR00805 311 KNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFI 390 (633)
T ss_pred hhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhhe
Confidence 01123456778899999999999999999999999999999999999999999999888776 567999999999
Q ss_pred HHhhc--hHHHHHHHHHHHHHHHHHHh-----------------------------hh--------h-------------
Q psy16660 426 MNVLG--AKHTIIIGLVFEMLQLMWYG-----------------------------FG--------S------------- 453 (594)
Q Consensus 426 ~dr~g--~~~~l~~~~~~~~i~~~~~~-----------------------------~~--------~------------- 453 (594)
.||++ .|+.+..++++..+++++.. .. .
T Consensus 391 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~t 470 (633)
T TIGR00805 391 MKKFKLNVKKAAYFAICLSTLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLA 470 (633)
T ss_pred eeeecccHHHHHHHHHHHHHHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCE
Confidence 99997 45666666666555543311 00 0
Q ss_pred -----------------h------------------------H--HHHHHHHHHH---HHh-hchHhHHHHHHhhcCCCc
Q psy16660 454 -----------------Q------------------------M--WMMWAAGILA---SLA-SITYPAISALVSMHSDAD 486 (594)
Q Consensus 454 -----------------~------------------------~--~~~~~~~~l~---g~~-~~~~~~~~~~~~~~~p~~ 486 (594)
+ . ..++.+++++ .+. ..........+.+.+|++
T Consensus 471 Y~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~ 550 (633)
T TIGR00805 471 YLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPE 550 (633)
T ss_pred EECccccCCCCccCCCCcceecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcc
Confidence 0 0 0011121211 121 233344455667889999
Q ss_pred cchHHHHHHHHH-HHHHHhHHHHHHHHHHHHhh
Q psy16660 487 RQGLVQGMVTGM-RGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 487 ~~g~~~g~~~~~-~~lg~~lg~~~~g~l~~~~g 518 (594)
+|..+.|+...+ +-+|.+-+|.++|.+.|..=
T Consensus 551 ~rs~alg~~~~~~rllg~iP~pi~fG~~iD~sC 583 (633)
T TIGR00805 551 EKSLAIGLQWLCMRVFATIPAPILFGLLIDVSC 583 (633)
T ss_pred cchHHhhHHHHHHHHhcCCChhHHHhhhhhchh
Confidence 999999997765 55788999999999999754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-21 Score=202.48 Aligned_cols=348 Identities=18% Similarity=0.204 Sum_probs=262.8
Q ss_pred HHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcc----cCchhh-HHHHHHHhhhhhhh
Q psy16660 106 IFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL----WGRKLF-LLITVFVTCLPIPL 180 (594)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr----~Grr~~-l~~~~~~~~i~~~~ 180 (594)
.+...+.++. ....+..+..+..+-+...+|.+..+.-+..++..|+.|.++|| |||+|+ ++.+.+..++.+.+
T Consensus 21 d~~~~~~~~~-~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l 99 (467)
T COG2211 21 DFASNFAFGI-VVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVL 99 (467)
T ss_pred hhHHHHHHHH-HHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHH
Confidence 3444455555 55566666666666666666999999999999999999999996 898666 66665655555444
Q ss_pred --hcc------hHHHHHHHHHHHHHH-hHHHHHHHHHhhcccc-cccccchhchhHHHHHHHHhhhhhhhHHHHhhhccc
Q psy16660 181 --MTL------DTWWFFAMISISGVF-AVTFSVVFAYVADVTE-EHERSLAYGLKFIALKIILMTLDTWWFFAMISISGV 250 (594)
Q Consensus 181 --~~~------~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~-~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 250 (594)
.++ +....++...+.+++ +....+..++.+++.+ ++||.+..+.
T Consensus 100 ~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~-------------------------- 153 (467)
T COG2211 100 LFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSW-------------------------- 153 (467)
T ss_pred HHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHH--------------------------
Confidence 222 455666677788887 6555566777777765 5667776655
Q ss_pred cchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHH-----H--hcChHHHHHHHHHHHHHHH
Q psy16660 251 FAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLE-----K--TYSLSLVVAVATAVAILDV 323 (594)
Q Consensus 251 ~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~-----~--~~gw~~~f~~~~~~~ll~~ 323 (594)
-.....+|..+...+...+. + ..||+...++.+++..+..
T Consensus 154 ---------------------------------R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~ 200 (467)
T COG2211 154 ---------------------------------RMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILL 200 (467)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHH
Confidence 44444444333322222222 2 4589999999999988888
Q ss_pred HHhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhH
Q psy16660 324 FFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVH 403 (594)
Q Consensus 324 ~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 403 (594)
+.+++..+|+..+....++ ..+.+..+++...++||.++.+++..++.........+...+|.+..+|.+...
T Consensus 201 l~~~~~v~ER~~~~~~~~~-------~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~ 273 (467)
T COG2211 201 LFCFFNVKERVVETQPTKT-------GVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELF 273 (467)
T ss_pred HHHHHHhhcccCccccCcc-------cccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHH
Confidence 8888888887653332211 012233345567889999999999888888888888888888888888988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHh-hchHhHHHHHHh
Q psy16660 404 VAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGS--QMWMMWAAGILASLA-SITYPAISALVS 480 (594)
Q Consensus 404 ~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~~-~~~~~~~~~~~~ 480 (594)
....+.....+.+.+.++.+++.+|+|+|++...+.++.+++.+++.+.+ +.+..++..++.+++ +...+..+++++
T Consensus 274 ~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~ 353 (467)
T COG2211 274 AYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVA 353 (467)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhc
Confidence 88888888888889999999999999999999999999999888877755 566667777888888 889999999999
Q ss_pred hcCCC-------ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 481 MHSDA-------DRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 481 ~~~p~-------~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
|..+. +..|...|.+++.+.+|.+++..+.|++.+..|+.
T Consensus 354 d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv 400 (467)
T COG2211 354 DTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYV 400 (467)
T ss_pred chhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 98763 56799999999999999999999999999999987
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-20 Score=204.35 Aligned_cols=352 Identities=13% Similarity=0.105 Sum_probs=225.6
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhHHHHHH-hhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcc-cCchhhHHHHHHHh
Q psy16660 97 PSVYHALVVIFLEFFAWGLLTMPIISVLN-RTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL-WGRKLFLLITVFVT 174 (594)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr-~Grr~~l~~~~~~~ 174 (594)
+.++.++...+...+++.. ..+.++.|. ++++.+..+. +++.+.+........+++|+++|| +|||+.++++.++.
T Consensus 21 ~~~~~~~~~~~~~~~~~y~-~~~~l~~yl~~~lg~s~~~a-~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~ 98 (500)
T PRK09584 21 KAFYLIFSIELWERFGYYG-LQGIMAVYLVKQLGMSEADS-ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVL 98 (500)
T ss_pred chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 3466777777888887766 567777775 6676665555 777777776666667899999999 59999999998888
Q ss_pred hhhhhhhcc---hHHHHHHHHHHHHHH-hHHHHHHHHHhhccccccc--ccchhchhHHHHHHHHhhhhhhhHHHHhhhc
Q psy16660 175 CLPIPLMTL---DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHE--RSLAYGLKFIALKIILMTLDTWWFFAMISIS 248 (594)
Q Consensus 175 ~i~~~~~~~---~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~--r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (594)
+++..+++. +.+.++++|+++|++ +...+...+++.|++|+++ |..++++
T Consensus 99 ~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~------------------------ 154 (500)
T PRK09584 99 AIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTM------------------------ 154 (500)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchH------------------------
Confidence 877666332 456677889999998 4456677789999998653 3456666
Q ss_pred cccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHh--
Q psy16660 249 GVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFI-- 326 (594)
Q Consensus 249 g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~-- 326 (594)
+..+.++|..+||.+++++.+++|||+.|++.++..++..+..
T Consensus 155 -----------------------------------~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~ 199 (500)
T PRK09584 155 -----------------------------------YYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAF 199 (500)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999876545443322
Q ss_pred -heeccCCCch-hhccCCCCCCCC------------c--cccCCch-----------------h--hHhhhccchhHHHH
Q psy16660 327 -LVAVPESLPE-KVRQASWGGAPI------------S--WEQADPF-----------------A--SLRKVGKDQTILML 371 (594)
Q Consensus 327 -~~~l~e~~~~-~~~~~~~~~~~~------------~--~~~~~~~-----------------~--~~~~~~~~~~~~~~ 371 (594)
...++|..++ +.++.+..+... . +...+.. . ..++.. +++.+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 278 (500)
T PRK09584 200 CQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAMKGAA-RRKMIVA 278 (500)
T ss_pred hHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHH-HHHHHHH
Confidence 2233432111 111111100000 0 0000000 0 000111 1222222
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHH--HhCCCh------hHHHHHHHHHHHHHHHHHHHH----HHHHHhhchHHHHHHHH
Q psy16660 372 CVTVFLSYLPEAGQYSCLFVYLKL--VMGFDE------VHVAVFIAVIGTLSVSAQIIL----GCLMNVLGAKHTIIIGL 439 (594)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~--~~g~s~------~~~g~~~~~~~i~~~~~~~~~----g~l~dr~g~~~~l~~~~ 439 (594)
+. .++....++..+...+.++.. ..+.+. ...+.+.+...+..++..++. +++.+|.+..+.+.+|+
T Consensus 279 ~~-~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~ 357 (500)
T PRK09584 279 FI-LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGM 357 (500)
T ss_pred HH-HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHH
Confidence 21 223333334444444444332 111111 225566667776666666665 55555555667888999
Q ss_pred HHHHHHHHHHhhhhh---------HHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHH
Q psy16660 440 VFEMLQLMWYGFGSQ---------MWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAM 509 (594)
Q Consensus 440 ~~~~i~~~~~~~~~~---------~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~ 509 (594)
++.+++++.+....+ .+......++.++| ....|...+++.+..|++.||+++|+......+|..++..+
T Consensus 358 ~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~ 437 (500)
T PRK09584 358 VLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYV 437 (500)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888776544 45677788889999 88899999999999999999999997666555555555444
Q ss_pred HH
Q psy16660 510 FG 511 (594)
Q Consensus 510 ~g 511 (594)
.+
T Consensus 438 ~~ 439 (500)
T PRK09584 438 AN 439 (500)
T ss_pred HH
Confidence 43
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-21 Score=206.94 Aligned_cols=354 Identities=13% Similarity=0.122 Sum_probs=244.2
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccC-----chhhHHHHHHHh-hhhh
Q psy16660 105 VIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG-----RKLFLLITVFVT-CLPI 178 (594)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~G-----rr~~l~~~~~~~-~i~~ 178 (594)
..+...+. ++...+..+.+.++++.+..+. +...++..++..+ .+++|.++||++ ||+.++++.++. ++..
T Consensus 34 ~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i-~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~ 110 (468)
T TIGR00788 34 VLFVKGIA-GLMRLPLSPMLTDDLGLDGARY-QRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILY 110 (468)
T ss_pred HHHHhhHH-HHhhhhhhHHHHHhcCCCHHHH-HHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHH
Confidence 34444444 4444556666676788887776 8889999999888 555999999997 667677776555 3433
Q ss_pred hhhc--ch-HHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchh
Q psy16660 179 PLMT--LD-TWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVT 254 (594)
Q Consensus 179 ~~~~--~~-~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 254 (594)
..++ .+ .....+..++.+++ +..-.+..+++.|..+ +++....+.
T Consensus 111 ~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~------------------------------ 159 (468)
T TIGR00788 111 GLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSL------------------------------ 159 (468)
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCe------------------------------
Confidence 3333 34 33444477888887 5555677999999998 555443333
Q ss_pred hhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCC
Q psy16660 255 FSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESL 334 (594)
Q Consensus 255 ~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~ 334 (594)
.+. .....++|.++|+.++|.+.+.++|+..|++.+++.++.. +..+++||++
T Consensus 160 --------------------~s~------~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~-~~~~~~~E~~ 212 (468)
T TIGR00788 160 --------------------VSW------MWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQL-FVSNLSKERR 212 (468)
T ss_pred --------------------eeH------HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH-HHHHhccccc
Confidence 000 2233458999999999999999999999999988877763 3345578864
Q ss_pred chhhccC-CCCC---CCCcc----ccCCchhhHhhhccchhHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhCCChhHHH
Q psy16660 335 PEKVRQA-SWGG---APISW----EQADPFASLRKVGKDQTILMLCVTVFL-SYLPEAGQYSCLFVYLKLVMGFDEVHVA 405 (594)
Q Consensus 335 ~~~~~~~-~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~s~~~~g 405 (594)
.....+. +... ..... ..++...+.+..+++|.++..++..++ +....... ..+..+.++.+|+++.+.|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~-~~~f~~~~~~lG~s~~~~G 291 (468)
T TIGR00788 213 AFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGAS-GSVFCATTQCLPGGPSFSG 291 (468)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCC-ceeEEEEcccCCCCcchhh
Confidence 2111110 0000 00000 011223445556788888876666665 32222221 1111233456799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHHHHh-hchHhH
Q psy16660 406 VFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFG----------SQMWMMWAAGILASLA-SITYPA 474 (594)
Q Consensus 406 ~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~l~g~~-~~~~~~ 474 (594)
+.....+++.+++..+.+++.+|++.|+++.++.++.+++.+..... ++.+......++.+++ +..+..
T Consensus 292 ~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~ 371 (468)
T TIGR00788 292 MSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMP 371 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999998888876543211 2233444555666776 777777
Q ss_pred HHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 475 ISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 475 ~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
...++++..|++.+|+.+++.+...++|..+++.++|.+.+..|..
T Consensus 372 ~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~ 417 (468)
T TIGR00788 372 FLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGIT 417 (468)
T ss_pred HHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999999999999999999999998843
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=197.75 Aligned_cols=329 Identities=12% Similarity=0.046 Sum_probs=237.5
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHH
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISI 194 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l 194 (594)
..-..|.+.++++.+..+..|.+.+++..+++++.++.|+++||+|.|+++.++.+...+..++ ++.+++.+.+.|++
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~l 124 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVF 124 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777888888874599999999999999999999999999999999999888887776 56689999999999
Q ss_pred HHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhh
Q psy16660 195 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSL 273 (594)
Q Consensus 195 ~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~ 273 (594)
.|++ ++.+ +...++..++|+++|+++.++
T Consensus 125 lGvaEA~~~-A~~syI~~WfP~kER~ratsi------------------------------------------------- 154 (511)
T TIGR00806 125 YSVTMAARI-AYSSYIFSLVPPSRYQRAAAY------------------------------------------------- 154 (511)
T ss_pred HHHHHHHHH-HHHHHHHHHCCHHHHHHHHHH-------------------------------------------------
Confidence 9999 6666 889999999999999999999
Q ss_pred hhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHH---HHHHHHHHHHhheeccCCCchhh--ccC-------
Q psy16660 274 AYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVA---TAVAILDVFFILVAVPESLPEKV--RQA------- 341 (594)
Q Consensus 274 ~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~---~~~~ll~~~~~~~~l~e~~~~~~--~~~------- 341 (594)
..++..+|.+++++++++ ...+|||+...+. .....+++ +..+++|..++..- +++
T Consensus 155 ----------~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~-~~a~~LP~~~~sl~f~~~~~~~~~~~ 222 (511)
T TIGR00806 155 ----------SRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSV-FLALFLKRPKRSLFFNRLEDVRGALP 222 (511)
T ss_pred ----------HHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHH-HHHHhCCCCchhhhhccccccccccc
Confidence 999999999999999999 4568999765443 22233333 33445774433100 000
Q ss_pred -C--CC-CCCC--cc--cc-------CCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHH
Q psy16660 342 -S--WG-GAPI--SW--EQ-------ADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAV 406 (594)
Q Consensus 342 -~--~~-~~~~--~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 406 (594)
+ .. +.+. .. .+ ...+.+++...+|+.++...+-..+....+..+.++....-.+.-+-.+.-.|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~ 302 (511)
T TIGR00806 223 CELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGA 302 (511)
T ss_pred cccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCH
Confidence 0 00 0000 00 00 012344556678888777777766666666666666665555442312224566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcC
Q psy16660 407 FIAVIGTLSVSAQIILGCLMNVLGAK--HTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHS 483 (594)
Q Consensus 407 ~~~~~~i~~~~~~~~~g~l~dr~g~~--~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~ 483 (594)
.-++..+.+.+..+..|.+-.++.+. ..+.+..++.+..++++...++.|..+++.+++... .+..+....-+++..
T Consensus 303 veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L 382 (511)
T TIGR00806 303 VDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSL 382 (511)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777777778888888886655442 333344555666677888899999999999999888 788888888888888
Q ss_pred CCccchHHHHHHHHHHHHHHhHHH
Q psy16660 484 DADRQGLVQGMVTGMRGLCNGLGP 507 (594)
Q Consensus 484 p~~~~g~~~g~~~~~~~lg~~lg~ 507 (594)
..+.-|...|+++++.-+-+.+-.
T Consensus 383 ~~~~~aLvFGiNtfvAl~LQtilT 406 (511)
T TIGR00806 383 SKELCALVFGINTFVATALKTIIT 406 (511)
T ss_pred cccceEEEEecHHHHHHHHHHheE
Confidence 888889999999887666555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-20 Score=202.74 Aligned_cols=355 Identities=19% Similarity=0.245 Sum_probs=245.7
Q ss_pred hhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHH-hHHH
Q psy16660 126 RTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISISGVF-AVTF 202 (594)
Q Consensus 126 ~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l~Gi~-~~~~ 202 (594)
+.+..+.. ...+..+++.+|..++++++|+++||+|||++++.+.++..++.+. ++.|++.+++.|+++|++ ++..
T Consensus 111 ~~~c~~~~-~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 111 NLVCDSST-LVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred ceeeCcHh-HHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence 33444444 4499999999999999999999999999999999999888877666 778999999999999998 8888
Q ss_pred HHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhhhccccccc
Q psy16660 203 SVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFS 282 (594)
Q Consensus 203 ~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~ 282 (594)
.....++.|++++++|+.+..+
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~---------------------------------------------------------- 211 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTL---------------------------------------------------------- 211 (521)
T ss_pred HHhHhhheeecCcchhhHHHHH----------------------------------------------------------
Confidence 9999999999999999997765
Q ss_pred chhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCC-------------Cc
Q psy16660 283 QVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAP-------------IS 349 (594)
Q Consensus 283 ~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~-------------~~ 349 (594)
... ...+..+++..++++.+ +||+.+++..++.++.+++ ++..||+++....+.+.+++. .+
T Consensus 212 -~~~-~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~ 286 (521)
T KOG0255|consen 212 -GGF-FFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLS 286 (521)
T ss_pred -HHH-HHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCC
Confidence 333 34455566777777776 8999999999888886665 565779887544333221110 00
Q ss_pred c------c---------cCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy16660 350 W------E---------QADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTL 414 (594)
Q Consensus 350 ~------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~ 414 (594)
. . ..++...+..+++.|++....+...+.++.....+.-+...... +|.+ ........+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~-lg~~---~~~~~~~~~~~ 362 (521)
T KOG0255|consen 287 VKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSG-LGGN---IYLNFTLSGLV 362 (521)
T ss_pred cHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhh-cCch---HHHHHHHHHHH
Confidence 0 0 00011223445556655555555444443333332222222222 3433 33444444556
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchH
Q psy16660 415 SVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMW---MMWAAGILASLA-SITYPAISALVSMHSDADRQGL 490 (594)
Q Consensus 415 ~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~ 490 (594)
...+....+...|+.|||.....+..+..+++++.++..... ..++...+..++ +..+.....+..|.+|...|+.
T Consensus 363 ~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~ 442 (521)
T KOG0255|consen 363 ELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNT 442 (521)
T ss_pred HhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 677778888999999999999999999999998888765332 233333343344 6666667899999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHH-HHHHHHHHHHHHHhcc
Q psy16660 491 VQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVF-GALLVIAALLVATFIP 569 (594)
Q Consensus 491 ~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~ 569 (594)
+.+..+....++.+++|.+....... . +...+.+ +....+.+.+...++|
T Consensus 443 ~~~~~~~~~~~~~i~ap~~~~~~~~~-~----------------------------~~~~~~~~~~~~~l~~~~~~~~lp 493 (521)
T KOG0255|consen 443 AVGAISAAARLGSILAPLFPLLLRQM-F----------------------------PLLGLILFGWLALLLGLLSLLLLP 493 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-c----------------------------ccchHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999987655442 1 1133333 4444555555558888
Q ss_pred CcccccCc
Q psy16660 570 ESIVTRSV 577 (594)
Q Consensus 570 ~~~~~~~~ 577 (594)
+++.....
T Consensus 494 et~~~~l~ 501 (521)
T KOG0255|consen 494 ETKGKPLP 501 (521)
T ss_pred ccCCCCCc
Confidence 88766543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=196.61 Aligned_cols=338 Identities=13% Similarity=0.091 Sum_probs=223.0
Q ss_pred HHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcc----cCchhh-HHHHHHHhhhhhhh-h-c
Q psy16660 110 FFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL----WGRKLF-LLITVFVTCLPIPL-M-T 182 (594)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr----~Grr~~-l~~~~~~~~i~~~~-~-~ 182 (594)
.+.++. ....+..+..+.-+-+...+|.+..+.-+..++..|+.|.++|| +||||. ++++.+..+++..+ + .
T Consensus 22 ~~~~~~-~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~ 100 (460)
T PRK11462 22 HIIFDN-VMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST 100 (460)
T ss_pred hHHHHH-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC
Confidence 333344 34444444444434444555999999999999999999999996 798766 55665666655544 2 2
Q ss_pred c--h----HHHHHHHHHHHHHH-hHHHHHHHHHhhcccc-cccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchh
Q psy16660 183 L--D----TWWFFAMISISGVF-AVTFSVVFAYVADVTE-EHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVT 254 (594)
Q Consensus 183 ~--~----~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~-~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 254 (594)
+ + ..++++..++..++ .....+..++.+|..+ ++||.+..++
T Consensus 101 p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~------------------------------ 150 (460)
T PRK11462 101 PDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSW------------------------------ 150 (460)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHH------------------------------
Confidence 2 1 34455555666665 5555566677777766 5667776666
Q ss_pred hhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHh-------cChHHHHHHHHHHHHHHHHHhh
Q psy16660 255 FSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKT-------YSLSLVVAVATAVAILDVFFIL 327 (594)
Q Consensus 255 ~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~-------~gw~~~f~~~~~~~ll~~~~~~ 327 (594)
......+|..+++.+...+.+. .+|+....+.+++.+++..+.+
T Consensus 151 -----------------------------r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~ 201 (460)
T PRK11462 151 -----------------------------RFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCF 201 (460)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666555444332 2577777777777766666555
Q ss_pred eeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHH
Q psy16660 328 VAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVF 407 (594)
Q Consensus 328 ~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~ 407 (594)
...+|+.++++ ++....+.++..++||.++.++...++.............+|.+..+| ++...+.+
T Consensus 202 ~~~kE~~~~~~------------~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g-~~~~~~~~ 268 (460)
T PRK11462 202 FTTKERVEAPP------------TTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILG-TPEVFVAF 268 (460)
T ss_pred hcceeccCCCc------------cCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcC-ChHHHHHH
Confidence 55666432211 111234567788899998888777666666666666666666666555 34455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCC
Q psy16660 408 IAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFG--SQMWMMWAAGILASLA-SITYPAISALVSMHSD 484 (594)
Q Consensus 408 ~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p 484 (594)
.....++.+++.++++++.||+++|+....+..+.++..+++.+. .+.+..++..++.|++ +...+..++++.|..+
T Consensus 269 l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d 348 (460)
T PRK11462 269 LTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVD 348 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 777888888999999999999999988765544433323333222 2233344445556666 5666777888888876
Q ss_pred -------CccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 485 -------ADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 485 -------~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
.+..|..++..++..++|.++++.+.|.+++..|+.
T Consensus 349 ~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy~ 391 (460)
T PRK11462 349 YGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYD 391 (460)
T ss_pred hhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344567778888999999999999999999998886
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.3e-20 Score=181.03 Aligned_cols=339 Identities=14% Similarity=0.034 Sum_probs=228.0
Q ss_pred HHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchH
Q psy16660 108 LEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDT 185 (594)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~ 185 (594)
.....+.+...-+.|......+.+..+. .++......+..+++..+|.++|++|||+.+.+..+..++...+ +++|+
T Consensus 88 mad~m~~m~~s~i~~~l~~~w~~s~~q~-~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf 166 (528)
T KOG0253|consen 88 MADAMEMMLLSLILPALDEVWGPSEGQA-PLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNF 166 (528)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhh-hHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCe
Confidence 3333334423334444455555444444 99999999999999999999999999999999988887776665 78899
Q ss_pred HHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhcc
Q psy16660 186 WWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVAD 264 (594)
Q Consensus 186 ~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d 264 (594)
.++++.|.+.|+| ++ .|...++-.|..|..+|....-.
T Consensus 167 ~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~---------------------------------------- 205 (528)
T KOG0253|consen 167 ASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVM---------------------------------------- 205 (528)
T ss_pred ehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhH----------------------------------------
Confidence 9999999999998 65 88888999999998888886654
Q ss_pred chhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCC
Q psy16660 265 VTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWG 344 (594)
Q Consensus 265 ~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~ 344 (594)
. ..+.+|.++..++.-.+..++||||.......+..+.+. ..+.+||+++....+.+..
T Consensus 206 -------------------~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~-f~~w~~ESpRf~~~~G~~~ 264 (528)
T KOG0253|consen 206 -------------------S-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAAR-FLVWVYESPRFYLAKGDDY 264 (528)
T ss_pred -------------------H-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHH-HHhhcccCcchhhhcCChH
Confidence 4 667888888888888888889999998888866555444 4566999976432222111
Q ss_pred CC--------------------------CCcc-----------ccCCchhhHhhhc----cchhHHHHHHHHHHHHHhhh
Q psy16660 345 GA--------------------------PISW-----------EQADPFASLRKVG----KDQTILMLCVTVFLSYLPEA 383 (594)
Q Consensus 345 ~~--------------------------~~~~-----------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 383 (594)
++ +.+. ..+++..+..+++ |...+. +....+...+.++
T Consensus 265 kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttll-lw~iwfgnafsyy 343 (528)
T KOG0253|consen 265 KALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLL-LWRIWFGNAFSYY 343 (528)
T ss_pred HHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHH-HHHHHHhhHHHHH
Confidence 00 0000 0111222233332 112211 1111111111112
Q ss_pred hHH-----------------HHHHHHHHHHhC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q psy16660 384 GQY-----------------SCLFVYLKLVMG--FDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEML 444 (594)
Q Consensus 384 ~~~-----------------~~~~~~~~~~~g--~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i 444 (594)
+.. ...|.+.+...+ .+...--.-..+..+....|.++.+++.||+|||+.+...+++.++
T Consensus 344 g~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~i 423 (528)
T KOG0253|consen 344 GSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGI 423 (528)
T ss_pred HHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHH
Confidence 111 111222222111 1111112224456677789999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHH
Q psy16660 445 QLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMF 510 (594)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~ 510 (594)
..+++....+.....+..+..-+. ...+...+.|..|.+|...|+++.|....+..+|+++.|.++
T Consensus 424 flfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 424 FLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred HHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH
Confidence 988887765544443333333344 566677788999999999999999999999999999999998
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-19 Score=181.73 Aligned_cols=267 Identities=13% Similarity=0.111 Sum_probs=205.6
Q ss_pred cchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhh
Q psy16660 182 TLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFA 260 (594)
Q Consensus 182 ~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a 260 (594)
..+++.++++-++.|.| +...+..+.++++..++|++.+.+++
T Consensus 7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~------------------------------------ 50 (310)
T TIGR01272 7 QRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLAL------------------------------------ 50 (310)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHH------------------------------------
Confidence 34789999999999999 77888899999999999899999998
Q ss_pred hhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHH----------------hcChHHHHHHHHHHHHHHHH
Q psy16660 261 YVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEK----------------TYSLSLVVAVATAVAILDVF 324 (594)
Q Consensus 261 ~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~----------------~~gw~~~f~~~~~~~ll~~~ 324 (594)
.+..+++|.++||++++.+.. ..+|++++++.+.+.++..+
T Consensus 51 -----------------------~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i 107 (310)
T TIGR01272 51 -----------------------TQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAI 107 (310)
T ss_pred -----------------------HHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998773 14799999966555444333
Q ss_pred -HhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--hCCCh
Q psy16660 325 -FILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLV--MGFDE 401 (594)
Q Consensus 325 -~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~ 401 (594)
+....+||.++++.++.+ + ++. .+.+..+++|.++...+..+++...+.+...+.+.|+.+. +|+++
T Consensus 108 ~~~~~~~p~~~~~~~~~~~--------~-~~~-~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~ 177 (310)
T TIGR01272 108 IFAFLPLPELQEADVARVS--------S-GDT-TQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPE 177 (310)
T ss_pred HHHHccCCCCCcccccccc--------c-ccc-cchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCH
Confidence 333334554322111100 0 000 1112355788888888888888888999999999999864 69999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHh
Q psy16660 402 VHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVS 480 (594)
Q Consensus 402 ~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~ 480 (594)
.+.+...+.+..+.++|+++.+++.||+++++.+.++..+.+++.++....++.+. .....+.|++ +..+|...+...
T Consensus 178 ~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a~ 256 (310)
T TIGR01272 178 DQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTIFSLAL 256 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888877777665555444333 3355577888 889999999998
Q ss_pred hcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 481 MHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 481 ~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
+..|+ +.+++.++. ....+|++++|.+.|.+.|..|.+
T Consensus 257 ~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~ 294 (310)
T TIGR01272 257 NALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQ 294 (310)
T ss_pred hhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccch
Confidence 88864 457777775 677899999999999999987754
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-20 Score=193.57 Aligned_cols=360 Identities=12% Similarity=0.056 Sum_probs=239.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhhhc--c-------hHHHHHHHHHHHHHH-hHH
Q psy16660 132 TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--L-------DTWWFFAMISISGVF-AVT 201 (594)
Q Consensus 132 ~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~~~--~-------~~~~l~~~r~l~Gi~-~~~ 201 (594)
+....+.+..+..++..++++++|++.||+|||+++...++++.++.++.+ . -.+++.+.|++.|+| ++-
T Consensus 82 ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGD 161 (538)
T KOG0252|consen 82 PSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGD 161 (538)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCC
Confidence 344458999999999999999999999999999999888877777765522 1 257899999999999 889
Q ss_pred HHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccc
Q psy16660 202 FSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSF 281 (594)
Q Consensus 202 ~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~ 281 (594)
+|...+..+|...++.||...+.
T Consensus 162 YPlSAtI~SE~an~~~RGa~iaa--------------------------------------------------------- 184 (538)
T KOG0252|consen 162 YPLSATIMSESANKKTRGAFIAA--------------------------------------------------------- 184 (538)
T ss_pred CcchHHHhhhhhhhccccceeEE---------------------------------------------------------
Confidence 99999999999999999998888
Q ss_pred cchhHHHhhHHHHHHHHHHHHHH----h-----------cChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCC---
Q psy16660 282 SQVSATFAASMVFSPALGAYLEK----T-----------YSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASW--- 343 (594)
Q Consensus 282 ~~~~~~~~~g~~igp~l~~~l~~----~-----------~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~--- 343 (594)
+.+..+.|...|.+++-.+.. . .=||..+.+.++++++.+. .-..+||+++.+....+.
T Consensus 185 --vFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly-~Rl~M~Et~~Y~al~~~~~~~ 261 (538)
T KOG0252|consen 185 --VFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLY-FRLKMPETARYTALVSKKLKQ 261 (538)
T ss_pred --EEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH-hhhcCCcchhHHHHhhcCHhh
Confidence 666666666666655544321 1 2399999988877776443 345689987654110000
Q ss_pred --------CCC------CCccccCCch---hhHhhhccc---hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhH
Q psy16660 344 --------GGA------PISWEQADPF---ASLRKVGKD---QTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVH 403 (594)
Q Consensus 344 --------~~~------~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 403 (594)
... ..+...+.+. ..+...+.. +.++..+...++.-.+++....+....+++ .|+.+.+
T Consensus 262 a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~ 340 (538)
T KOG0252|consen 262 AAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSA 340 (538)
T ss_pred hhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCc
Confidence 000 0000000111 111111111 334444555555555555555444445544 3555433
Q ss_pred HHH--------HHHHHH-HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhh-H---HHHHHHHHHHHHhh-
Q psy16660 404 VAV--------FIAVIG-TLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQ-M---WMMWAAGILASLAS- 469 (594)
Q Consensus 404 ~g~--------~~~~~~-i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~-~---~~~~~~~~l~g~~~- 469 (594)
.-. ...+.. .+.+.|..+...+.|++||++..+.|+.++++.++.++...+ . ....+...+..+.+
T Consensus 341 ~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~N 420 (538)
T KOG0252|consen 341 NTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGN 420 (538)
T ss_pred chHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHh
Confidence 222 122222 223346666677899999999999999999999988887654 1 11222222222221
Q ss_pred -chHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCC
Q psy16660 470 -ITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPG 548 (594)
Q Consensus 470 -~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (594)
.-......+.+|.+|.+.||+..|+....+..|+.++...+.++.+.. +. +..+..
T Consensus 421 FGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~-yp----------------------~~~g~~ 477 (538)
T KOG0252|consen 421 FGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN-YP----------------------PNIGVR 477 (538)
T ss_pred cCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc-CC----------------------ccccch
Confidence 122334455689999999999999999999999999999999998832 11 123445
Q ss_pred hhHHHHHHHHHHHHHHHHhccCccccc
Q psy16660 549 PPFVFGALLVIAALLVATFIPESIVTR 575 (594)
Q Consensus 549 ~~f~~~~~~~~~~~~~~~~~~~~~~~~ 575 (594)
..+++.+.+.+++.+..++++|++.+.
T Consensus 478 ~v~~i~~~~~~~gi~~T~l~pEtk~~~ 504 (538)
T KOG0252|consen 478 NVFIILAGCMLLGILFTLLIPETKGKS 504 (538)
T ss_pred HHHHHHHHHHHHhHheeEEeecccccC
Confidence 789999999999999999999887664
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-25 Score=240.17 Aligned_cols=352 Identities=16% Similarity=0.194 Sum_probs=238.1
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcc---hHHHHHHHHHHHHHH-hHHHHHHHHH
Q psy16660 135 MNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTL---DTWWFFAMISISGVF-AVTFSVVFAY 208 (594)
Q Consensus 135 ~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~---~~~~l~~~r~l~Gi~-~~~~~~~~a~ 208 (594)
..++..+...++..+++++.|.++||+|||+.+.++.++..++.++ ++. +++.++++|++.|++ ++..+....+
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~ 126 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIY 126 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4589999999999999999999999999999999999998888777 666 899999999999998 7778889999
Q ss_pred hhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHH
Q psy16660 209 VADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATF 288 (594)
Q Consensus 209 i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~ 288 (594)
+.|..|++.|++...+ .+...
T Consensus 127 ~~E~~~~~~R~~~~~~-----------------------------------------------------------~~~~~ 147 (451)
T PF00083_consen 127 ISEIAPPKHRGFLSSL-----------------------------------------------------------FQLFW 147 (451)
T ss_pred cccccccccccccccc-----------------------------------------------------------ccccc
Confidence 9999999999998888 88888
Q ss_pred hhHHHHHHHHHHHHHHh---cChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCCcc---------------
Q psy16660 289 AASMVFSPALGAYLEKT---YSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISW--------------- 350 (594)
Q Consensus 289 ~~g~~igp~l~~~l~~~---~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~--------------- 350 (594)
.+|.+++..++..+... .+||..+++..++.++..+. .+++||+|+....+++.++++...
T Consensus 148 ~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~-~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~ 226 (451)
T PF00083_consen 148 ALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLL-RFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEE 226 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccc-ccccccccceecccccccccccccccccccccccccccc
Confidence 88888887776555333 35999999998887775444 467999987544333222211000
Q ss_pred ccCCc------hhhHhhhccchhH-HHHHHHHHHHHHh---h-hhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q psy16660 351 EQADP------FASLRKVGKDQTI-LMLCVTVFLSYLP---E-AGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQ 419 (594)
Q Consensus 351 ~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~ 419 (594)
..++. ...++++++++.. +.......+.... . .....+.+.+.++ .+.+.. -.......+...++.
T Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~--~~~~~~~~~~~~~~~ 303 (451)
T PF00083_consen 227 IKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNS--FLATLILGLVNFLGT 303 (451)
T ss_pred cccccccccccceeeeeccccccccccccccccccccccccccccccccccccccc-cccccc--ccccccccccccccc
Confidence 00000 0124445554331 1122222221111 1 1222222333333 455544 222334445555777
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHh--h---hhh----HHHHHHHHHHHHHh--hchHhHHHHHHhhcCCCccc
Q psy16660 420 IILGCLMNVLGAKHTIIIGLVFEMLQLMWYG--F---GSQ----MWMMWAAGILASLA--SITYPAISALVSMHSDADRQ 488 (594)
Q Consensus 420 ~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~--~---~~~----~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~p~~~~ 488 (594)
++...+.||+|||++++.+..+++++.+.++ . .++ .+..+....++... ....+..+.+..|.+|.+.|
T Consensus 304 ~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R 383 (451)
T PF00083_consen 304 LLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVR 383 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccc
Confidence 7777999999999999999888887776664 1 111 12222222222222 34556777888999999999
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhc
Q psy16660 489 GLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFI 568 (594)
Q Consensus 489 g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 568 (594)
+++.|+....+.+++++++.+...+.+..+.. ...+..+++..+..++...++
T Consensus 384 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~---------------------------~~~~i~~~~~~i~~i~~~~~l 436 (451)
T PF00083_consen 384 STGIGLSYAVGRIGGFIIPFLFPYLFNNLGGW---------------------------GVFLIFAGVCLIAIIFVYFFL 436 (451)
T ss_pred cccccccccccccccccccccccccccccccc---------------------------ccchhhHHHHHHHHhheeEEE
Confidence 99999999999999999999998888765511 133344444555555666788
Q ss_pred cCcccccC
Q psy16660 569 PESIVTRS 576 (594)
Q Consensus 569 ~~~~~~~~ 576 (594)
||++++.-
T Consensus 437 pET~g~~l 444 (451)
T PF00083_consen 437 PETKGKTL 444 (451)
T ss_pred eeCCCCCH
Confidence 99887654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-18 Score=176.45 Aligned_cols=358 Identities=13% Similarity=0.154 Sum_probs=263.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHH-HHHhhhhhhh--hcc--hHHH-HHHHHHHHHHH-hHHH
Q psy16660 130 DHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLIT-VFVTCLPIPL--MTL--DTWW-FFAMISISGVF-AVTF 202 (594)
Q Consensus 130 ~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~-~~~~~i~~~~--~~~--~~~~-l~~~r~l~Gi~-~~~~ 202 (594)
.++....|...++..+..++.+|+.|.++|+.|+||..+.. ..+..+..++ +.. +.++ .++...+..++ ....
T Consensus 54 ~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~ 133 (438)
T COG2270 54 ASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSN 133 (438)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhh
Confidence 34455569999999999999999999999999977765433 3333333222 333 3444 44466677776 5566
Q ss_pred HHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhhhccccccc
Q psy16660 203 SVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFS 282 (594)
Q Consensus 203 ~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~ 282 (594)
....+++.|..++++-++..++ +++.|+
T Consensus 134 Vfyds~L~~~~~k~~~~riS~l-----------------------------------------------g~~~gy----- 161 (438)
T COG2270 134 VFYDSMLPRLTTKDNMGRISGL-----------------------------------------------GWALGY----- 161 (438)
T ss_pred eehhhHhhhhcCccccCccccc-----------------------------------------------cccccc-----
Confidence 6778999999998877776655 344444
Q ss_pred chhHHHhhHHHHHHHHHHH-----H-------HHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCCcc
Q psy16660 283 QVSATFAASMVFSPALGAY-----L-------EKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISW 350 (594)
Q Consensus 283 ~~~~~~~~g~~igp~l~~~-----l-------~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~ 350 (594)
.+....+-...+..+++- . .+...-|..+.+.++..++..+..++..|+.+....... .....
T Consensus 162 -lgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~----~~l~~ 236 (438)
T COG2270 162 -LGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPP----TALRN 236 (438)
T ss_pred -ccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccch----HHHHH
Confidence 433333322222222210 0 022346778888888877777776666766543210000 00000
Q ss_pred ccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy16660 351 EQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLG 430 (594)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g 430 (594)
.-++...++++.++++.+..+++..+++.=...+.......|....+|++..+..++.....+.+++++++.|++.||+|
T Consensus 237 g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg 316 (438)
T COG2270 237 GFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFG 316 (438)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11234566788888899999999999888888888888889999899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHH
Q psy16660 431 AKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAM 509 (594)
Q Consensus 431 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~ 509 (594)
.|+++.+++++..+.++...+......+++...+.|+. +..+....++..+.+|+++.++.+|+++..+..+..+||.+
T Consensus 317 ~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~l 396 (438)
T COG2270 317 SKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFL 396 (438)
T ss_pred CceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHH
Confidence 99999999988888877777777777778888888988 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhccCc
Q psy16660 510 FGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIPES 571 (594)
Q Consensus 510 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 571 (594)
.+.+.+.+|.. ...+....+++.++++..+.++.+
T Consensus 397 v~v~t~iTg~~---------------------------r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 397 VAVITQITGSS---------------------------RAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHhcch---------------------------hhHHHHHHHHHHhhHhhEEeecCC
Confidence 99999988754 245555666667777766666655
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=7e-20 Score=175.77 Aligned_cols=373 Identities=12% Similarity=0.136 Sum_probs=247.5
Q ss_pred HHHHHHHHHhhh-----hhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcc-cCchhhHHHHHHHhhhh
Q psy16660 104 VVIFLEFFAWGL-----LTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL-WGRKLFLLITVFVTCLP 177 (594)
Q Consensus 104 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr-~Grr~~l~~~~~~~~i~ 177 (594)
...+.+.+++|. .-.....++..+.+....+. .++.++|.....+...+.|++.|| +|-|..-++-+++.+++
T Consensus 45 ~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akf-tLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~G 123 (459)
T KOG4686|consen 45 ALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKF-TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLG 123 (459)
T ss_pred HHHHHHHhcccceeecCCchhhhhhhhcccccceeee-eeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHH
Confidence 344455555554 12233445556666665555 889999999999999999999997 78787766666666666
Q ss_pred hhhhc-----chHHHHHHHHHHHHHHhHHHHHH-HHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhcccc
Q psy16660 178 IPLMT-----LDTWWFFAMISISGVFAVTFSVV-FAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVF 251 (594)
Q Consensus 178 ~~~~~-----~~~~~l~~~r~l~Gi~~~~~~~~-~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 251 (594)
-+.++ ..+|.++++|++.|+|+-...++ ..+..-|+..+|.+.++|+
T Consensus 124 qliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGl--------------------------- 176 (459)
T KOG4686|consen 124 QLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGL--------------------------- 176 (459)
T ss_pred HHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhH---------------------------
Confidence 55543 48999999999999997666655 5788888988898888888
Q ss_pred chhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHh------------cChHHHHH-HHHHH
Q psy16660 252 AVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKT------------YSLSLVVA-VATAV 318 (594)
Q Consensus 252 ~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~------------~gw~~~f~-~~~~~ 318 (594)
.....-+|..+--.+.+++.+. .|-...+- .....
T Consensus 177 --------------------------------qlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~ 224 (459)
T KOG4686|consen 177 --------------------------------QLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQ 224 (459)
T ss_pred --------------------------------HHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 3333333333222233333221 11111111 11122
Q ss_pred HHHHHHHhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhC
Q psy16660 319 AILDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMG 398 (594)
Q Consensus 319 ~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 398 (594)
.+++.... .+-+...++.-+.+.. ..-+ .....+.+. -.|.+|.+.+..++++.+...+.+.-|.++++++|
T Consensus 225 slical~l--g~~D~rAerilh~e~g-~~Ge---~pkLtdv~~--f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfG 296 (459)
T KOG4686|consen 225 SLICALSL--GLSDDRAERILHLEEG-FLGE---EPKLTDVNT--FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFG 296 (459)
T ss_pred HHHHHHHh--hhhhhHHHHHHhhhcC-cccC---Ccccccccc--cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhC
Confidence 22222211 1222222211111100 0000 011112211 25789999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHH
Q psy16660 399 FDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIG-LVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAIS 476 (594)
Q Consensus 399 ~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~-~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~ 476 (594)
+|+..++.+.+.....+.+.+++.|.++||+|++...+.+ .+...++...+.+ +.+..+.++.+.|++ .......+
T Consensus 297 lS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslW 374 (459)
T KOG4686|consen 297 LSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLW 374 (459)
T ss_pred CChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHh
Confidence 9999999999999999999999999999999987655544 4444445444433 445667788888888 66666788
Q ss_pred HHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHH
Q psy16660 477 ALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGAL 556 (594)
Q Consensus 477 ~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 556 (594)
..+...+|+++.|+++|..+.+.++|-++.|.+.|.+.|.-|.. ...+..|+....
T Consensus 375 P~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y------------------------~~le~ffl~~~~ 430 (459)
T KOG4686|consen 375 PCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSY------------------------DNLEAFFLIIGL 430 (459)
T ss_pred hhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCch------------------------hhHHHHHHHHHH
Confidence 88889999999999999999999999999999999999875521 223355666666
Q ss_pred HHHHHHHHHHhccC
Q psy16660 557 LVIAALLVATFIPE 570 (594)
Q Consensus 557 ~~~~~~~~~~~~~~ 570 (594)
+.+.+..+.+.+.+
T Consensus 431 ~aL~svgil~~~N~ 444 (459)
T KOG4686|consen 431 MALTSVGILFYLNK 444 (459)
T ss_pred HHHHHHHHHhheec
Confidence 66666655555543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-17 Score=177.84 Aligned_cols=358 Identities=12% Similarity=0.147 Sum_probs=227.9
Q ss_pred cCCchhHHHHHHHHHHHHhhhhhhhHHHHHHhh-CCCchhHHHHHHHHHHHHHHHHHhhHhhhhhccc-CchhhHHHHHH
Q psy16660 95 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRT-FPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW-GRKLFLLITVF 172 (594)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~-Grr~~l~~~~~ 172 (594)
.++.++.++...+...+++.. ....+|.|..+ ++.+..+. +.+.+.+.....++.++.|+++||+ ||||+++++.+
T Consensus 7 ~p~~l~~l~~~~~~e~fs~Yg-~~~~L~~yL~~~lgls~~~a-~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~i 84 (493)
T PRK15462 7 QPRAIYYVVALQIWEYFSFYG-MRALLILYLTNQLKYDDNHA-YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGAL 84 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 345566667777777777666 56777877654 56655554 8999999999999999999999999 99999999988
Q ss_pred Hhhhhhhhhcc---hHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccc--cccchhchhHHHHHHHHhhhhhhhHHHHhh
Q psy16660 173 VTCLPIPLMTL---DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEH--ERSLAYGLKFIALKIILMTLDTWWFFAMIS 246 (594)
Q Consensus 173 ~~~i~~~~~~~---~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~--~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 246 (594)
+.+++.++++. +...+.++..+.++| +...+...+++.|.+|++ +|..++++
T Consensus 85 l~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i---------------------- 142 (493)
T PRK15462 85 LMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSL---------------------- 142 (493)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehH----------------------
Confidence 88887665432 223344444444455 333455678899999875 67777887
Q ss_pred hccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHh
Q psy16660 247 ISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFI 326 (594)
Q Consensus 247 ~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~ 326 (594)
.....++|..++|.+.+++.+.+||++.|.+.++..+++.+..
T Consensus 143 -------------------------------------~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~ 185 (493)
T PRK15462 143 -------------------------------------MYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIF 185 (493)
T ss_pred -------------------------------------HHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHH
Confidence 7788889999999999999998999999998776544444333
Q ss_pred heeccCCCchh-h-ccCCCCCCCCcc------------------c-cCCchhh-----------------H-hhh---cc
Q psy16660 327 LVAVPESLPEK-V-RQASWGGAPISW------------------E-QADPFAS-----------------L-RKV---GK 364 (594)
Q Consensus 327 ~~~l~e~~~~~-~-~~~~~~~~~~~~------------------~-~~~~~~~-----------------~-~~~---~~ 364 (594)
++ .++...+. . ++++.++++... . ..+.... . +.. -|
T Consensus 186 ~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er 264 (493)
T PRK15462 186 LC-GNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQR 264 (493)
T ss_pred HH-hhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 22 11111110 0 000000000000 0 0000000 0 000 01
Q ss_pred ch--hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHhhch--H----
Q psy16660 365 DQ--TILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFD----EVHVAVFIAVIGTLSVSAQIILGCLMNVLGA--K---- 432 (594)
Q Consensus 365 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s----~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~--~---- 432 (594)
+| .+..+.+...+++..+....+.+..|..+..+.+ +....++.+...+..++.+++.+++-.|..+ |
T Consensus 265 ~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~ 344 (493)
T PRK15462 265 KELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRI 344 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 11 1233444455555556666667777776643211 1235677778888888777777777555522 1
Q ss_pred -HHHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHH
Q psy16660 433 -HTIIIGLVFEMLQLMWYGFG---------SQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGL 501 (594)
Q Consensus 433 -~~l~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~l 501 (594)
.=..+|+++.+++++++... .+.+.++...+++++| -+..|...+++++..|++.+|..+|+....
T Consensus 345 ~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~--- 421 (493)
T PRK15462 345 WGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLL--- 421 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHH---
Confidence 12567788888887776531 2456677888888999 778899999999999999999999998432
Q ss_pred HHhHHHHHHHHHHHHh
Q psy16660 502 CNGLGPAMFGLIFYMF 517 (594)
Q Consensus 502 g~~lg~~~~g~l~~~~ 517 (594)
+.++++.+.|.+.+..
T Consensus 422 ~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 422 SGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 2345555555555543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.82 E-value=5e-17 Score=166.80 Aligned_cols=360 Identities=18% Similarity=0.186 Sum_probs=261.4
Q ss_pred HHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccC-----chhhHHH-HHHHhhhhhhh-------hcc-------
Q psy16660 124 LNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG-----RKLFLLI-TVFVTCLPIPL-------MTL------- 183 (594)
Q Consensus 124 ~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~G-----rr~~l~~-~~~~~~i~~~~-------~~~------- 183 (594)
+..|++.... ..+.+.++..+... ..+.+|+.||+++ ||..+++ +.+..+.+..+ ++.
T Consensus 6 MIvEL~vpA~-lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~ 83 (403)
T PF03209_consen 6 MIVELGVPAW-LVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG 83 (403)
T ss_pred HHHHhccHHH-HHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 3456655544 44888888887766 5999999999988 8877554 45444443322 222
Q ss_pred h--HH--HHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhh
Q psy16660 184 D--TW--WFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVV 258 (594)
Q Consensus 184 ~--~~--~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 258 (594)
+ .+ ...+...+.|+| ....++..+++.|..|+|+|+++.++
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~i---------------------------------- 129 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAI---------------------------------- 129 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHH----------------------------------
Confidence 1 22 223356677777 55566778888888888888888888
Q ss_pred hhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHH---HHHHHHHHHHhheeccCCCc
Q psy16660 259 FAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVA---TAVAILDVFFILVAVPESLP 335 (594)
Q Consensus 259 ~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~---~~~~ll~~~~~~~~l~e~~~ 335 (594)
.-.+.-+|.+++..+.+.+.+.++..-...+. +++.++..++..+ -.|++.
T Consensus 130 -------------------------vw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~w-g~E~r~ 183 (403)
T PF03209_consen 130 -------------------------VWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALW-GQEPRR 183 (403)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHH-hcccCC
Confidence 88888899999999999888766543333222 2222222222222 233332
Q ss_pred hhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Q psy16660 336 EKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLS 415 (594)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~ 415 (594)
++..+. .+.++....+.+++++.+|+..++....++..+.+......+-+|--+++|++..+...+....+.+.
T Consensus 184 ~~~~~~------~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~ 257 (403)
T PF03209_consen 184 SRRAAA------AERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGT 257 (403)
T ss_pred cccccC------CCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHH
Confidence 222211 11123344567788889999999999999998888888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchH
Q psy16660 416 VSAQIILGCLMN-VLGAKHTIIIGLVFEMLQLMWYGF---GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGL 490 (594)
Q Consensus 416 ~~~~~~~g~l~d-r~g~~~~l~~~~~~~~i~~~~~~~---~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~ 490 (594)
+++....+++.. |.++++....|+....+++.++.. ..+.|.+....+++|++ +.+.....+...+..++++.|.
T Consensus 258 L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~ 337 (403)
T PF03209_consen 258 LLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGL 337 (403)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhH
Confidence 999999998876 677888888888888887766554 45688899999999999 7777777888888998999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhcc
Q psy16660 491 VQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIP 569 (594)
Q Consensus 491 ~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 569 (594)
.+|.....+.++..++..++|.+.|....-.. +.+..+|...|.+-++++++++++...+.
T Consensus 338 ~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~------------------~~~~~aY~~VF~lEa~ll~~a~~ll~~l~ 398 (403)
T PF03209_consen 338 FMGAWGAAQAIARGLGTFLGGALRDLVRALFG------------------NSPALAYGVVFALEAVLLLAALVLLGRLD 398 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------CCcchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999997543210 01445677788888888887777665443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-17 Score=178.90 Aligned_cols=370 Identities=10% Similarity=-0.037 Sum_probs=239.6
Q ss_pred hhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hc------chHHHHH
Q psy16660 118 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MT------LDTWWFF 189 (594)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~------~~~~~l~ 189 (594)
..+.+.+.++++.+..+. +++.++.. ...++.++.|+++||+|||+++.++.++..++.++ ++ .+++.++
T Consensus 47 sv~s~~L~~~lgls~~~l-~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~ 124 (591)
T PTZ00207 47 NLISGAMQARYNLTQRDL-STITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLS 124 (591)
T ss_pred HHHHHHHHHHhCcCHHHH-HHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 445677788888887766 88877643 44567788999999999999999999998888776 33 3789999
Q ss_pred HHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhh
Q psy16660 190 AMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEE 268 (594)
Q Consensus 190 ~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~ 268 (594)
+.|++.|+| +...+.....+.+++| ++||++.|+
T Consensus 125 l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi-------------------------------------------- 159 (591)
T PTZ00207 125 VYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAI-------------------------------------------- 159 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHH--------------------------------------------
Confidence 999999998 5566777888899986 788999999
Q ss_pred hhhhhhhcccccccchhHHHhhHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhh---------
Q psy16660 269 HERSLAYGLSFSFSQVSATFAASMVF-SPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKV--------- 338 (594)
Q Consensus 269 ~~r~~~~g~~~~~~~~~~~~~~g~~i-gp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~--------- 338 (594)
.....++|..+ +++..+++. .+|+..|++.+++.++..++.+.++++++.+..
T Consensus 160 ---------------~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~ 222 (591)
T PTZ00207 160 ---------------MKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDE 222 (591)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCH
Confidence 66666666653 333333332 245566665555555544444443333321100
Q ss_pred -ccC--C--C-----CCC--------------------------------------------------C-----------
Q psy16660 339 -RQA--S--W-----GGA--------------------------------------------------P----------- 347 (594)
Q Consensus 339 -~~~--~--~-----~~~--------------------------------------------------~----------- 347 (594)
++. + . ++. .
T Consensus 223 ~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~ 302 (591)
T PTZ00207 223 EEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDG 302 (591)
T ss_pred HHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc
Confidence 000 0 0 000 0
Q ss_pred ---C--------------------c--------c-ccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy16660 348 ---I--------------------S--------W-EQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKL 395 (594)
Q Consensus 348 ---~--------------------~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (594)
. + . ..++.-.++.+.+++..+|.+....++.........+.+-...+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~s 382 (591)
T PTZ00207 303 KRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTA 382 (591)
T ss_pred CCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHH
Confidence 0 0 0 000001245555667789999888888877766666666666665
Q ss_pred HhCCChhH--HHHHHHHHHHHHHHHHHHHHHHHHhhch--------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy16660 396 VMGFDEVH--VAVFIAVIGTLSVSAQIILGCLMNVLGA--------KHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILA 465 (594)
Q Consensus 396 ~~g~s~~~--~g~~~~~~~i~~~~~~~~~g~l~dr~g~--------~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 465 (594)
.-|.+.+. ...+.+..++++.+|++..|.+.....+ |.+.+....++.++.+++.+......+++..++.
T Consensus 383 l~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~p~~~L~~~~~lv 462 (591)
T PTZ00207 383 LAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTLPKAALPLPYFIA 462 (591)
T ss_pred hcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHCCccHhHHHHHHH
Confidence 32552322 2337888999999999999988722222 2223323333666666666554436788999999
Q ss_pred HHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHH-HHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCC
Q psy16660 466 SLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLG-PAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYP 543 (594)
Q Consensus 466 g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg-~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (594)
|++ |..++.....++|.+. ++-|+-+-+.....-+|..+- -.++|.+||+-... +....=..
T Consensus 463 g~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k---------------~~~~~C~G 526 (591)
T PTZ00207 463 AFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADK---------------LGQDVCTE 526 (591)
T ss_pred HHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhh---------------CCCCeeCC
Confidence 999 9999999999999998 888999888888888888776 66888999864311 00000011
Q ss_pred CcCCChhHHHHHHHHHHHHHHHHh
Q psy16660 544 SVIPGPPFVFGALLVIAALLVATF 567 (594)
Q Consensus 544 ~~~~~~~f~~~~~~~~~~~~~~~~ 567 (594)
..=+..+|++.+++...+.+....
T Consensus 527 ~~C~~~~~~v~~~~~~~g~~~s~~ 550 (591)
T PTZ00207 527 RVCVVMPLAFLLGLSFLAFITSTY 550 (591)
T ss_pred ceeeHhHHHHHHHHHHHHHHHHhh
Confidence 122335677776666666665543
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-18 Score=181.31 Aligned_cols=374 Identities=16% Similarity=0.217 Sum_probs=238.4
Q ss_pred cCCcccCCchhHHHHHHHHHHHHhhhhhhhHHHHHHhh-CCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCc-hhhH
Q psy16660 90 QTSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRT-FPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGR-KLFL 167 (594)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Gr-r~~l 167 (594)
+.+..++++++...+..|+.....+. +.|..-.|.++ ....+.+..|++.++..++.++++|.+|+++.|.|. |+++
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI-~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl 105 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSI-YLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL 105 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheE-EEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH
Confidence 33445678889999999999998888 55555444444 233334455999999999999999999999999997 8888
Q ss_pred HHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhh
Q psy16660 168 LITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISI 247 (594)
Q Consensus 168 ~~~~~~~~i~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 247 (594)
+.+.++.+++.++.. ..+..|.+.| |++..+|.+
T Consensus 106 i~s~ii~~~g~llY~--------------------------~l~~~~~~~~--------------------y~mL~~R~l 139 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYL--------------------------ALAYVPNGVK--------------------YLMLVARIL 139 (488)
T ss_pred HHHHHHHHHHHHHHH--------------------------HHHhcccchH--------------------HHHHHHHHH
Confidence 999888888866520 1111222111 455555566
Q ss_pred ccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHh------------c-ChHHHHHH
Q psy16660 248 SGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKT------------Y-SLSLVVAV 314 (594)
Q Consensus 248 ~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~------------~-gw~~~f~~ 314 (594)
.|...++.+.+++|++|.+.+++|.|+++. .+.+..+|.++||.++..+..- + -+..+-|+
T Consensus 140 ~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~------~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~ 213 (488)
T KOG2325|consen 140 TGVGVGNFAVLRAYIADASTVEDRPRAFAA------TSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWL 213 (488)
T ss_pred cCcCcccHHHHHHHHHhccCccchHHHHHH------hhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHH
Confidence 666666667777888888888888888877 8888888888888887766431 0 14467888
Q ss_pred HHHHHHHHHHHhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchh-HHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy16660 315 ATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQT-ILMLCVTVFLSYLPEAGQYSCLFVYL 393 (594)
Q Consensus 315 ~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (594)
.+++.++.++++.++++|..++...++...+ + +.+...+..+...-++. .+.+....+...+......+..+.+.
T Consensus 214 m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~ 289 (488)
T KOG2325|consen 214 MAILWIIYIVIILFFFKEVYRGIIDKKKRSV---E-EEKSDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALT 289 (488)
T ss_pred HHHHHHHHHHHHHhheeecccCccccccccc---h-hhccchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 8888999888888889987665433321111 0 00011111111111222 23333334444444444456666777
Q ss_pred HHHhCCChhHHH----HHHHHHHHHHHHHHHHHHHHH-HhhchHHHHHHHHHHHHHHHHHHhh----h------------
Q psy16660 394 KLVMGFDEVHVA----VFIAVIGTLSVSAQIILGCLM-NVLGAKHTIIIGLVFEMLQLMWYGF----G------------ 452 (594)
Q Consensus 394 ~~~~g~s~~~~g----~~~~~~~i~~~~~~~~~g~l~-dr~g~~~~l~~~~~~~~i~~~~~~~----~------------ 452 (594)
...++++..++- .+.+..++..+...+...... .++.+|+.+..+.+.......+... .
T Consensus 290 m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~ 369 (488)
T KOG2325|consen 290 MVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYA 369 (488)
T ss_pred HHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeecccccccccccccccc
Confidence 777888776653 444444444444333333332 2334455555553333333322211 0
Q ss_pred ---------------hhHHHHHHH-HHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16660 453 ---------------SQMWMMWAA-GILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFY 515 (594)
Q Consensus 453 ---------------~~~~~~~~~-~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~ 515 (594)
.+.+.+++. .+++|.+ ........+..++...|+++++.+|.++.....+..++|.+...++.
T Consensus 370 ~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~ 449 (488)
T KOG2325|consen 370 GCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT 449 (488)
T ss_pred CcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHH
Confidence 012222222 3345555 55666788899999999999999999999999999999999999999
Q ss_pred Hhhcc
Q psy16660 516 MFHVD 520 (594)
Q Consensus 516 ~~g~~ 520 (594)
..|.+
T Consensus 450 ~~g~~ 454 (488)
T KOG2325|consen 450 LSGPR 454 (488)
T ss_pred hcCcc
Confidence 88765
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-14 Score=148.84 Aligned_cols=356 Identities=13% Similarity=0.143 Sum_probs=240.6
Q ss_pred cCCchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCC----CchhHHHHHHHHHHHHHHHHHhhHhhhhhcc-cCchhhHHH
Q psy16660 95 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFP----DHTFLMNGLIMGIKGFLSFLSAPLIGALSDL-WGRKLFLLI 169 (594)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr-~Grr~~l~~ 169 (594)
..+.++.++.+-+...|++.-+..+..-++..+++ .++.+. .-+.+.|....-+...+.|+++|| +|+|+.+..
T Consensus 19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A-~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~l 97 (498)
T COG3104 19 QPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHA-TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVL 97 (498)
T ss_pred CCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhh-HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 35677888889999999987755555555555655 555555 455566666666778999999999 699999999
Q ss_pred HHHHhhhhhhhhcc----hHHHHHHHHHHHHHH-hHHHHHHHHHhhccccccc--ccchhchhHHHHHHHHhhhhhhhHH
Q psy16660 170 TVFVTCLPIPLMTL----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHE--RSLAYGLKFIALKIILMTLDTWWFF 242 (594)
Q Consensus 170 ~~~~~~i~~~~~~~----~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~--r~~~~g~~~~~~~~~~~~~~~~~~~ 242 (594)
+.+++++|.++++. +...++++-.+.++| +..=+...+++.|.+|+++ |...+++
T Consensus 98 Gail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~------------------ 159 (498)
T COG3104 98 GAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTL------------------ 159 (498)
T ss_pred HHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccE------------------
Confidence 99999999877433 467888888888898 4455677889999998654 4445555
Q ss_pred HHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Q psy16660 243 AMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILD 322 (594)
Q Consensus 243 ~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~ 322 (594)
+-.+.++|..++|++.+++.+++||...|.++++-..+.
T Consensus 160 -----------------------------------------fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~g 198 (498)
T COG3104 160 -----------------------------------------FYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIG 198 (498)
T ss_pred -----------------------------------------EEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999998877776
Q ss_pred HHHhheeccCCCc-----hhhccCCCCCCCCcc-------------c--cCCc-------------h----hhH------
Q psy16660 323 VFFILVAVPESLP-----EKVRQASWGGAPISW-------------E--QADP-------------F----ASL------ 359 (594)
Q Consensus 323 ~~~~~~~l~e~~~-----~~~~~~~~~~~~~~~-------------~--~~~~-------------~----~~~------ 359 (594)
++..++ .+.... +++...+.......+ . ..+. . +.+
T Consensus 199 l~~f~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 277 (498)
T COG3104 199 LVIFLL-GRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF 277 (498)
T ss_pred HHHHHH-ccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH
Confidence 665443 332111 111000000000000 0 0000 0 000
Q ss_pred hhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHhhchH---
Q psy16660 360 RKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFD----EVHVAVFIAVIGTLSVSAQIILGCLMNVLGAK--- 432 (594)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s----~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~--- 432 (594)
.+..|-.....+.+...+++..+....+.+..|..+..+-+ +....++.+...+..++.+++..++..|.+++
T Consensus 278 ~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ 357 (498)
T COG3104 278 DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQ 357 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCC
Confidence 00001112334444555555555666667777776643222 23456778888888888888888877774432
Q ss_pred ----HHHHHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHH
Q psy16660 433 ----HTIIIGLVFEMLQLMWYGFG----------SQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTG 497 (594)
Q Consensus 433 ----~~l~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 497 (594)
.-..+|+.+++.+++++... .+.|.++...++.++| -+..|...+++.+..|+...+.++++.-.
T Consensus 358 ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfL 437 (498)
T COG3104 358 PSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFL 437 (498)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 23445666666666655543 2578888899999999 77889999999999999999999998888
Q ss_pred HHHHHHhHHHHHHH
Q psy16660 498 MRGLCNGLGPAMFG 511 (594)
Q Consensus 498 ~~~lg~~lg~~~~g 511 (594)
....++.++..+.+
T Consensus 438 t~a~~~~l~g~va~ 451 (498)
T COG3104 438 TVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHhhceecc
Confidence 88888887777666
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-14 Score=148.30 Aligned_cols=334 Identities=12% Similarity=0.037 Sum_probs=219.1
Q ss_pred hhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcc------hHH--H
Q psy16660 118 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTL------DTW--W 187 (594)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~------~~~--~ 187 (594)
.|+-......++ +.. ..-|..-+|.+.+....++.-|+.||+|-|..++++..+.+++..+ .+. .++ .
T Consensus 65 a~i~n~~~~~Yg-s~~-~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l 142 (480)
T KOG2563|consen 65 APINNYVNSFYG-SSS-AADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPL 142 (480)
T ss_pred hhHHHHHHHHhc-chH-HHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhh
Confidence 344333344444 333 3478889999999999999999999999999999999999988777 221 334 4
Q ss_pred HHHHHHHHHHHhHHHHHH-HHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccch
Q psy16660 188 FFAMISISGVFAVTFSVV-FAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVT 266 (594)
Q Consensus 188 l~~~r~l~Gi~~~~~~~~-~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t 266 (594)
...+..+.+......-.. ..+..-|++++||..+..+
T Consensus 143 ~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~------------------------------------------ 180 (480)
T KOG2563|consen 143 THTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVL------------------------------------------ 180 (480)
T ss_pred hHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhH------------------------------------------
Confidence 455555555553333333 3556668999999998877
Q ss_pred hhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHh------cChHH--HHHHHHHHHHHHHHHhheeccCCCchhh
Q psy16660 267 EEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKT------YSLSL--VVAVATAVAILDVFFILVAVPESLPEKV 338 (594)
Q Consensus 267 ~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~------~gw~~--~f~~~~~~~ll~~~~~~~~l~e~~~~~~ 338 (594)
-..+..+|..+|-++...+..+ ..|.. .|+....+..+.+++..+..+++|+...
T Consensus 181 -----------------~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPp 243 (480)
T KOG2563|consen 181 -----------------GVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPP 243 (480)
T ss_pred -----------------HHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 5555556666666666555432 23443 3444444444444444444444332211
Q ss_pred ccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy16660 339 RQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSA 418 (594)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~ 418 (594)
...... ....+..++.++.++|+++..+.+++......+.+..+.+..-+.. -|.+...+|+......++.+++
T Consensus 244 s~s~~~-----~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY~~~~aG~ig~l~iv~Gmlg 317 (480)
T KOG2563|consen 244 SASQAA-----LQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP-SGYEGVFAGYIGALMIVAGMLG 317 (480)
T ss_pred chhHhh-----hhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccCCccccchhHHHHHHHHHHH
Confidence 111000 0122356788899999999999888887776666666555543333 2666678899999999999999
Q ss_pred HHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHh-hh---hhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHH
Q psy16660 419 QIILGCLMNVLGAKH-TIIIGLVFEMLQLMWYG-FG---SQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQ 492 (594)
Q Consensus 419 ~~~~g~l~dr~g~~~-~l~~~~~~~~i~~~~~~-~~---~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~ 492 (594)
+.+.|.+.||.++-+ ..++......++.+.+. .. ...+..+....++|+. ....|.-.-+..|..-|...|+..
T Consensus 318 a~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSs 397 (480)
T KOG2563|consen 318 ALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSS 397 (480)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccc
Confidence 999999999997644 44444444444422222 11 1233444444555665 667788788888887777889999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy16660 493 GMVTGMRGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 493 g~~~~~~~lg~~lg~~~~g~l~~~~g 518 (594)
|+.+..+++-+.+-..+.+...+..+
T Consensus 398 Gll~~~gq~f~~~~~~~~~~~~~~~~ 423 (480)
T KOG2563|consen 398 GLLNLSGQIFGVILVFIMGILAEDLG 423 (480)
T ss_pred eeEEeehhHHHHHHHHHHHHHhhccC
Confidence 99999999999988888888877654
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-13 Score=145.67 Aligned_cols=377 Identities=13% Similarity=0.177 Sum_probs=240.9
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhccc---C--chhhHHHHHHHhhhhhhh---hc---chH
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW---G--RKLFLLITVFVTCLPIPL---MT---LDT 185 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~---G--rr~~l~~~~~~~~i~~~~---~~---~~~ 185 (594)
..+..+.+.++++.++.+. ....++..++-.+ .|++|.++|.+ | ||+-++++.++..++... .. .+.
T Consensus 9 ~~~~~~~l~~~l~ls~~~~-~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~ 86 (433)
T PF03092_consen 9 RLAIYPFLKDDLGLSPAQL-QRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSA 86 (433)
T ss_pred HHHHHHHHHHHcCCCHHHH-HHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 4667788888899888777 7777777776654 89999999985 4 444466666555433332 22 255
Q ss_pred HHHHHHHHHHHHH-hHHHHHHHHHhhcccccc--cccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhh
Q psy16660 186 WWFFAMISISGVF-AVTFSVVFAYVADVTEEH--ERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYV 262 (594)
Q Consensus 186 ~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~--~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i 262 (594)
....+.-++..+| +..-.++.+.+.|...++ +|+...+.
T Consensus 87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~-------------------------------------- 128 (433)
T PF03092_consen 87 AIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSF-------------------------------------- 128 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHH--------------------------------------
Confidence 5555666666776 445556778888876432 34444444
Q ss_pred ccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCC
Q psy16660 263 ADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQAS 342 (594)
Q Consensus 263 ~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~ 342 (594)
......+|.+++..++|.+.+..+++..|.+.+++.++..+..++..+|++.....+..
T Consensus 129 ---------------------~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~ 187 (433)
T PF03092_consen 129 ---------------------VWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKVRPADEVF 187 (433)
T ss_pred ---------------------HHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhccccccchhh
Confidence 66677889999999999999999999999999888777766666656652211111000
Q ss_pred -CCCCCCccc---cCCchhhHhhhccchhHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHhC---CChhHHHHHHHHHHHH
Q psy16660 343 -WGGAPISWE---QADPFASLRKVGKDQTILMLCV-TVFLSYLPEAGQYSCLFVYLKLVMG---FDEVHVAVFIAVIGTL 414 (594)
Q Consensus 343 -~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~g~~~~~~~i~ 414 (594)
..+...+.. .++....+++.++++.++...+ ..++..............+..+..+ +++...|.+..+..++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~ 267 (433)
T PF03092_consen 188 SFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIA 267 (433)
T ss_pred cccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHH
Confidence 000000000 1233445566667787777666 3333333222111111223334455 8888899988888888
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHh-hh---------hhHHHHHHHHHHHHHh-hchHhHHHHHHhhcC
Q psy16660 415 SVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYG-FG---------SQMWMMWAAGILASLA-SITYPAISALVSMHS 483 (594)
Q Consensus 415 ~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~-~~---------~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~ 483 (594)
.+++..+..+...+..-|+++....++.++..+.-. +. ++.+....-.++..+. .+.+-....++++..
T Consensus 268 ~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lc 347 (433)
T PF03092_consen 268 SLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLC 347 (433)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHC
Confidence 889999988888888888888777666655433211 10 1112222233333333 566667778889999
Q ss_pred CCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHH
Q psy16660 484 DADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALL 563 (594)
Q Consensus 484 p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 563 (594)
|+...|+.+++...+.++|..++..++..+.+.+|.... .........+++.++.++.+.
T Consensus 348 P~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~--------------------~f~~l~~lili~~~~~ll~l~ 407 (433)
T PF03092_consen 348 PKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRD--------------------DFSNLWLLILICSVIQLLPLP 407 (433)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc--------------------cccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999885410 112233455566666677777
Q ss_pred HHHhccCcccc
Q psy16660 564 VATFIPESIVT 574 (594)
Q Consensus 564 ~~~~~~~~~~~ 574 (594)
....+++.++.
T Consensus 408 ll~lLp~~~~~ 418 (433)
T PF03092_consen 408 LLFLLPPQKRI 418 (433)
T ss_pred HHHHcCCCchh
Confidence 77677765443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.9e-13 Score=134.49 Aligned_cols=276 Identities=14% Similarity=0.107 Sum_probs=184.3
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh-hcc
Q psy16660 105 VIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL-MTL 183 (594)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~-~~~ 183 (594)
+..+...+..+ ..|..-.+.++++....++ +.+.........+..++.|.++||+|||+..+..+++..+++++ ...
T Consensus 42 vY~La~~aDWL-QGpY~Y~LY~~yg~~~~qI-a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~ 119 (354)
T PF05631_consen 42 VYLLAMAADWL-QGPYLYALYESYGFSEHQI-AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSS 119 (354)
T ss_pred HHHHHHHHHHh-hcchhHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcc
Confidence 33444555555 7776666667777776666 99999999999999999999999999999999999999999888 677
Q ss_pred hHHHHHHHHHHHHHH-hHHHHHHHHHh-hcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhh
Q psy16660 184 DTWWFFAMISISGVF-AVTFSVVFAYV-ADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAY 261 (594)
Q Consensus 184 ~~~~l~~~r~l~Gi~-~~~~~~~~a~i-~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~ 261 (594)
+++.++++|++.|++ +..+++-.+++ .|. ++|+.
T Consensus 120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh---~~~g~----------------------------------------- 155 (354)
T PF05631_consen 120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEH---NKRGF----------------------------------------- 155 (354)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCC-----------------------------------------
Confidence 999999999999998 55666666654 332 22221
Q ss_pred hccchhhhhhhhhhcccccccchh-HHHhhHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHhheeccCCCchhh
Q psy16660 262 VADVTEEHERSLAYGLSFSFSQVS-ATFAASMVFSPALGAYLEKTYS--LSLVVAVATAVAILDVFFILVAVPESLPEKV 338 (594)
Q Consensus 262 i~d~t~~~~r~~~~g~~~~~~~~~-~~~~~g~~igp~l~~~l~~~~g--w~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~ 338 (594)
+++..+..++. .. ...++-.+....++.++.+..+ ...+|....+..+++.+++....+|...+..
T Consensus 156 -----~~~~L~~tF~~------~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~ 224 (354)
T PF05631_consen 156 -----PQEWLSDTFSL------ATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTS 224 (354)
T ss_pred -----ChHHHHHHHHH------HHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcc
Confidence 11112222221 22 2334444555566667766554 4889999998888888877777777654322
Q ss_pred ccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy16660 339 RQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSA 418 (594)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~ 418 (594)
++.+ ..++..+.++.+++||+++.+.+...++-...+.+...+.+-++. +-.....|++++.+.++.++|
T Consensus 225 ~~~~--------~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~--~~~~~P~GlIFssFM~a~MlG 294 (354)
T PF05631_consen 225 SSSS--------LSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDP--DDEELPLGLIFSSFMVAMMLG 294 (354)
T ss_pred cccc--------hHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecC--CCCCCCchHHHHHHHHHHHHH
Confidence 2111 112333556777889999999888887766655444433333331 122345799999999999999
Q ss_pred HHHHHHHHHh-hchHHHHHHHHHHHHHHHH
Q psy16660 419 QIILGCLMNV-LGAKHTIIIGLVFEMLQLM 447 (594)
Q Consensus 419 ~~~~g~l~dr-~g~~~~l~~~~~~~~i~~~ 447 (594)
+.+..++..+ ......+.....+.++++.
T Consensus 295 S~lf~~l~s~~~~~e~~l~~v~~~aa~~l~ 324 (354)
T PF05631_consen 295 SSLFSRLLSKSLRPESLLRYVFAVAAVSLA 324 (354)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 9999776654 4444444444444444443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.9e-13 Score=140.54 Aligned_cols=155 Identities=11% Similarity=0.115 Sum_probs=135.0
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q psy16660 365 DQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEML 444 (594)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i 444 (594)
+|.++.+.+..++..........+++.|+++.+|++..+.|+..+...++.++.+++.|++.||+|+|+.+..+.++..+
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~ 85 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFAS 85 (395)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Confidence 45577777888888888888888999999988999999999999999999999999999999999999999999998888
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 445 QLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
+.+++.+.++.+..++...+.+.+ +...+...++..|..|+++|+++.|+.+...++|..++|.+.+.+.+ .|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~ 161 (395)
T PRK10054 86 GFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSIN 161 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccC
Confidence 888888888887776666666665 66678888999999999999999999999999999999999998875 4543
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-12 Score=141.58 Aligned_cols=176 Identities=14% Similarity=0.111 Sum_probs=150.8
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHH
Q psy16660 366 QTILMLCVTVFLSYLPEAGQYSCLFVYLKLV--MGFDEVHVAVFIAVIGTLSVSAQIILGCLMNV-LGAKHTIIIGLVFE 442 (594)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~ 442 (594)
+.++.+....++..+.+++...+++.|+++. +|++..++|.+.+...++..++.+++|+++|| +|+|+++..+.++.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~ 89 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL 89 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence 4566677777777888889999999999887 89999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCcc---chHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy16660 443 MLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADR---QGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 443 ~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~---~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g 518 (594)
+++.+++.+.++.+.++++..+.+++ +...+...+++.+.+|+++ |+++.++.+...++|..+||.+.+.+.+..|
T Consensus 90 ~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g 169 (475)
T TIGR00924 90 MLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG 169 (475)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999988887777777777888888 7788899999999998754 8889999999999999999999999998776
Q ss_pred ccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhcc
Q psy16660 519 VDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIP 569 (594)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 569 (594)
+. ..|.++++..+++.+.....+
T Consensus 170 ~~----------------------------~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 170 YH----------------------------VGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred hH----------------------------HHHHHHHHHHHHHHHHHHHcc
Confidence 55 778777766666655554444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-12 Score=134.44 Aligned_cols=164 Identities=23% Similarity=0.349 Sum_probs=137.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh
Q psy16660 373 VTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFG 452 (594)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~ 452 (594)
+..++..+........+|.++.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+.++.+++.++..+.
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 82 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence 44455555555566666656667789999999999999999999999999999999999999999999999985555555
Q ss_pred hhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCc
Q psy16660 453 SQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGT 531 (594)
Q Consensus 453 ~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~ 531 (594)
++.+.+++..++.|++ +...+...+++.+..|+++|+++++..+...++|..++|.+.+.+.+..|++
T Consensus 83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~----------- 151 (352)
T PF07690_consen 83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWR----------- 151 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHC-----------
T ss_pred hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccc-----------
Confidence 7777888888999999 8899999999999999999999999999999999999999999998777765
Q ss_pred ccccCCCCCCCCCcCCChhHHHHHHHHHHHHHH
Q psy16660 532 LANRTNNVNSYPSVIPGPPFVFGALLVIAALLV 564 (594)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 564 (594)
..|.+.+++.++..++
T Consensus 152 -----------------~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 152 -----------------WAFLISAILSLIAAIL 167 (352)
T ss_dssp -----------------CHHHHHHHHHHHHHHH
T ss_pred -----------------cccccccchhhhhhhh
Confidence 6777777777766654
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.4e-12 Score=135.46 Aligned_cols=151 Identities=16% Similarity=0.278 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q psy16660 369 LMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMW 448 (594)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~ 448 (594)
+.+....++..........+++.|+++.+|+++.+.|+..+...+...+..++.|++.||+|+|+.+..+..+..+++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~ 92 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFAT 92 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 45556677777777888888999998889999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 449 YGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 449 ~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
+...++.|.+++..++.|++ +...+...+++.+..|+++|+++.|+.+...++|..+||.++|.+. ..|++
T Consensus 93 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~ 164 (400)
T PRK11646 93 MAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFR 164 (400)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHH
Confidence 88888888888888888888 7778888999999999999999999999999999999999999998 55544
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-15 Score=162.60 Aligned_cols=389 Identities=13% Similarity=0.163 Sum_probs=2.4
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhhhcc
Q psy16660 104 VVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL 183 (594)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~~~~ 183 (594)
+..++.....+. ....+..+.+.++.++.+. |++.+.+-++..+..++..++.+|..|-|.+-++.++.+++.++++.
T Consensus 10 ~~~~~q~~~~g~-~~~~lttiErRF~l~S~~~-G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l 87 (539)
T PF03137_consen 10 LLGLFQMMVSGY-VNSSLTTIERRFGLSSSQS-GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL 87 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence 334444444444 6677788899999988877 99999999999999999999999988877888889999998887553
Q ss_pred hHHHHHHHH-----HH--HHHHhHHHHHH--------HHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhc
Q psy16660 184 DTWWFFAMI-----SI--SGVFAVTFSVV--------FAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISIS 248 (594)
Q Consensus 184 ~~~~l~~~r-----~l--~Gi~~~~~~~~--------~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (594)
. .++... .- .+--....... ..-..+....++.....-+ |+|+..+.+.
T Consensus 88 P--hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~f~~gq~l~ 151 (539)
T PF03137_consen 88 P--HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYF--------------YVFILGQLLI 151 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c--HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHH--------------HHHHHHHHHH
Confidence 1 111100 00 00000000000 0000111112233333334 4588999999
Q ss_pred cccch-hhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHh---------------------c
Q psy16660 249 GVFAV-TFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKT---------------------Y 306 (594)
Q Consensus 249 g~~~~-~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~---------------------~ 306 (594)
|..++ ..+...+||.|.+++++-+.=+|+ +.++..+|.++|-++|+.+.+. .
T Consensus 152 GiG~~pl~tLG~tYiDDnv~~~~splYiGi------~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~Wv 225 (539)
T PF03137_consen 152 GIGATPLYTLGITYIDDNVSKKNSPLYIGI------LYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWV 225 (539)
T ss_dssp SSS-----------------------------------------------------------------------------
T ss_pred hccccCCccceeeeeccccccccCccchhh------hhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHH
Confidence 99555 789999999999999998888899 8888899999999998876531 1
Q ss_pred C-hHHHHHHHHHHHHHHHHHhheeccCCCchhh------ccC--CCC---CCC-Cc--------cccCCchhhHhhhccc
Q psy16660 307 S-LSLVVAVATAVAILDVFFILVAVPESLPEKV------RQA--SWG---GAP-IS--------WEQADPFASLRKVGKD 365 (594)
Q Consensus 307 g-w~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~------~~~--~~~---~~~-~~--------~~~~~~~~~~~~~~~~ 365 (594)
| |..-|.+.+++.++..+... ..|+..+... +.. +.+ ..+ .+ ...++....++.+++|
T Consensus 226 GAWWLGfli~g~~~~l~aipl~-~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~N 304 (539)
T PF03137_consen 226 GAWWLGFLICGILLFLSAIPLF-FFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTN 304 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcC
Confidence 2 55556666665555444433 3554433220 000 000 000 00 0113344567788899
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHH-HHHHHHHHHHHHHhhch--HHHHHHHHHHH
Q psy16660 366 QTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTL-SVSAQIILGCLMNVLGA--KHTIIIGLVFE 442 (594)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~-~~~~~~~~g~l~dr~g~--~~~l~~~~~~~ 442 (594)
|.+....+..........++.++.|-|++.+|+.++.++.++.....+. .++|.+++|.+.+|++. |..+....+..
T Consensus 305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~ 384 (539)
T PF03137_consen 305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVS 384 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888776664 44999999999999853 44444333333
Q ss_pred HHHHHH---Hhh--------------h--------------------------------h-h----HHHHHHHHHHHHHh
Q psy16660 443 MLQLMW---YGF--------------G--------------------------------S-Q----MWMMWAAGILASLA 468 (594)
Q Consensus 443 ~i~~~~---~~~--------------~--------------------------------~-~----~~~~~~~~~l~g~~ 468 (594)
.++.+. +.+ . + + ...+.+..++..+.
T Consensus 385 ~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~ 464 (539)
T PF03137_consen 385 IVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFF 464 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHH
Confidence 332222 100 0 0 0 11122222222222
Q ss_pred -hchHhHHHHHHhhcCCCccchHHHHHHHHH-HHHHHhHHHHHHHHHHHHh
Q psy16660 469 -SITYPAISALVSMHSDADRQGLVQGMVTGM-RGLCNGLGPAMFGLIFYMF 517 (594)
Q Consensus 469 -~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~-~~lg~~lg~~~~g~l~~~~ 517 (594)
+...........+.+|+++|+.+.|+.... +-+|.+-+|.++|.+.|..
T Consensus 465 ~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 465 TFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp ---------------------------------------------------
T ss_pred HHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 444455556667889999999999997755 5578899999999999874
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.9e-12 Score=132.85 Aligned_cols=150 Identities=15% Similarity=0.189 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q psy16660 370 MLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWY 449 (594)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~ 449 (594)
.+....++..+........+|.|..+ .+.++.+.+++.+...++.+++.++.|++.||+|||+.+..+.++..++.++.
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 3 LLFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence 34555666666666777788888877 58899999999999999999999999999999999999999988888877777
Q ss_pred hhhh-----hHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 450 GFGS-----QMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 450 ~~~~-----~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
.+.+ +.+.+++..++.|++ +...+...+++.|..|+++|+++.|..+....+|..++|.+.+.+.+..|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~ 158 (365)
T TIGR00900 82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIK 158 (365)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 7666 888888888888988 7888999999999999999999999999999999999999999999887765
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-12 Score=139.99 Aligned_cols=188 Identities=14% Similarity=0.110 Sum_probs=151.8
Q ss_pred chhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Q psy16660 355 PFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHT 434 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~ 434 (594)
...+++.++++|.++.+.+..++..+........+|.+.++ ++.++.+.|+..+...++.+++.++.|++.||+|||+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~ 84 (417)
T PRK10489 6 WLLDLSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQM-MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKL 84 (417)
T ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceE
Confidence 34566667678888888888888888777777788888776 57799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHH
Q psy16660 435 IIIGLVFEMLQLMWYGF-----GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPA 508 (594)
Q Consensus 435 l~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~ 508 (594)
+..+.++.+++.+.+.. .++.+.+++..++.|++ +...+...+.+.+.+|+++++++.++.+...++|..+||.
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 164 (417)
T PRK10489 85 ILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPA 164 (417)
T ss_pred EEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHH
Confidence 88887777666554432 34566666777777887 6677888899999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhccCc
Q psy16660 509 MFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIPES 571 (594)
Q Consensus 509 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 571 (594)
++|.+.+..|++ +.|.+.++..+++.+..+.+++.
T Consensus 165 l~g~l~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~l~~~ 199 (417)
T PRK10489 165 LGGLLIAAGGVA----------------------------WNYGLAAAGTFITLLPLLRLPAL 199 (417)
T ss_pred HHHHHHHHHhhH----------------------------HHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999877654 66777766666666666666554
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.7e-12 Score=137.64 Aligned_cols=391 Identities=16% Similarity=0.190 Sum_probs=259.9
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhhhcc-
Q psy16660 105 VIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL- 183 (594)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~~~~- 183 (594)
..+...+..+. ....+..+.+.++..+.+. |++.+.+-++..+...+..+..-|..|-+.+-++.++++++.++++.
T Consensus 105 ~~~~q~l~~~y-~~s~IttiErRF~i~Ss~s-G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alP 182 (735)
T KOG3626|consen 105 AAFAQGLYVGY-FNSVITTIERRFKISSSQS-GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALP 182 (735)
T ss_pred HHHHHHhhhhh-hhhhhhhhhhhcCCCCCcc-eeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhCh
Confidence 33444444444 5666777888888888876 99999999999999999999999999999899999999888877443
Q ss_pred ----hHHHHHHHHHHHHHHhH----HHHHH---HHHhhcccccc---cccchhchhHHHHHHHHhhhhhhhHHHHhhhcc
Q psy16660 184 ----DTWWFFAMISISGVFAV----TFSVV---FAYVADVTEEH---ERSLAYGLKFIALKIILMTLDTWWFFAMISISG 249 (594)
Q Consensus 184 ----~~~~l~~~r~l~Gi~~~----~~~~~---~a~i~~~~~~~---~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 249 (594)
+....-..-..+..... ..... .......-+.. +.....-+ ..|+.++.+.|
T Consensus 183 Hf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------llff~~q~l~G 248 (735)
T KOG3626|consen 183 HFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPF--------------LLFFLGQLLLG 248 (735)
T ss_pred HHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhH--------------HHHHHHHHHhh
Confidence 11111111000010000 00000 01111111111 12232222 23888999999
Q ss_pred ccch-hhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhc-------------------ChH
Q psy16660 250 VFAV-TFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTY-------------------SLS 309 (594)
Q Consensus 250 ~~~~-~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~-------------------gw~ 309 (594)
..++ ..+...+||.|-+.+++-+.-+|+ +..+..+|.++|-++|+++.+.+ -|.
T Consensus 249 IG~Tpi~tlGisYiDDnvk~~~SplYlgi------~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWW 322 (735)
T KOG3626|consen 249 IGATPIFTLGISYIDDNVKKKNSPLYLGI------LYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWW 322 (735)
T ss_pred cCCCCCccCCCccccccccccCCcHHHHH------HHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHH
Confidence 9554 589999999999999988888899 88999999999999999876421 266
Q ss_pred HHHHHHHHHHHHHHHHhheeccCCCchhhc-----cCC--CCCCC---Ccc----ccCCchhhHhhhccchhHHHHHHHH
Q psy16660 310 LVVAVATAVAILDVFFILVAVPESLPEKVR-----QAS--WGGAP---ISW----EQADPFASLRKVGKDQTILMLCVTV 375 (594)
Q Consensus 310 ~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~-----~~~--~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (594)
.-|++.+.+.++..+..++ +|...++..+ +.+ ..+.. .+. ..++..+..+++++||.+...++..
T Consensus 323 lGFLi~g~~~~~~a~p~f~-fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~ 401 (735)
T KOG3626|consen 323 LGFLICGALLLFSAVPLFF-FPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLAS 401 (735)
T ss_pred HHHHHHHHHHHHHHHHHHh-CcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHH
Confidence 6777888777776666544 6655443221 000 00000 000 0123345677888999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH-HHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHH---H
Q psy16660 376 FLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSV-SAQIILGCLMNVLG--AKHTIIIGLVFEMLQLMW---Y 449 (594)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~-~~~~~~g~l~dr~g--~~~~l~~~~~~~~i~~~~---~ 449 (594)
.+......++.+++|-|++++||.++..+..+....++..+ +|.+++|++.+|+. .|......++...+.++. +
T Consensus 402 ~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~ 481 (735)
T KOG3626|consen 402 VIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLL 481 (735)
T ss_pred HHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888777 89999999999884 344444444333333322 1
Q ss_pred hhh-----------------------------------------------------------------hh----------
Q psy16660 450 GFG-----------------------------------------------------------------SQ---------- 454 (594)
Q Consensus 450 ~~~-----------------------------------------------------------------~~---------- 454 (594)
.+. .+
T Consensus 482 ~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCs 561 (735)
T KOG3626|consen 482 FFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCS 561 (735)
T ss_pred HEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeecccc
Confidence 110 00
Q ss_pred ---------------------HHHHHHHHHHHH---Hh-hchHhHHHHHHhhcCCCccchHHHHHHHHH-HHHHHhHHHH
Q psy16660 455 ---------------------MWMMWAAGILAS---LA-SITYPAISALVSMHSDADRQGLVQGMVTGM-RGLCNGLGPA 508 (594)
Q Consensus 455 ---------------------~~~~~~~~~l~g---~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~-~~lg~~lg~~ 508 (594)
-..++.+++++. +. +...+....++.+.+|+++|..++|+..++ +-+|.+-+|.
T Consensus 562 Cv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPI 641 (735)
T KOG3626|consen 562 CVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPI 641 (735)
T ss_pred ccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchH
Confidence 011222222222 22 344455666778889999999999997765 5589999999
Q ss_pred HHHHHHHHhh
Q psy16660 509 MFGLIFYMFH 518 (594)
Q Consensus 509 ~~g~l~~~~g 518 (594)
++|++.|..=
T Consensus 642 ifG~~ID~tC 651 (735)
T KOG3626|consen 642 IFGAVIDTTC 651 (735)
T ss_pred hhhhhHhhHH
Confidence 9999999753
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.2e-12 Score=135.30 Aligned_cols=153 Identities=14% Similarity=0.224 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q psy16660 367 TILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQL 446 (594)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~ 446 (594)
.+...++..++.++.........|.+.++ +|++..+.|++.+...++..++.++.|++.||+|+|+.+.++.++.+++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~ 102 (434)
T PRK11663 24 ILITMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIIN 102 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHH
Confidence 33444455555555445556667777665 79999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 447 MWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 447 ~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
+++...++.+.+++..++.|++ +..++...+++.+.+|+++||+++|+.+...++|..++|.+.+.+.+..|++
T Consensus 103 ~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~ 177 (434)
T PRK11663 103 ILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR 177 (434)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 9888888888888777788887 7778888999999999999999999999999999999999999998877655
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-12 Score=138.70 Aligned_cols=182 Identities=11% Similarity=0.049 Sum_probs=139.8
Q ss_pred cCCchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCch-------hHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhH
Q psy16660 95 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHT-------FLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFL 167 (594)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l 167 (594)
+.+.++.+++..++....... .....+.+.++.+.++ ....|...++..+...++.++.|+++||+|||+++
T Consensus 206 k~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l 284 (418)
T TIGR00889 206 KNKRMAIFFFFSMLLGAPLQI-TNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVM 284 (418)
T ss_pred cCCCeeeHHHHHHHHHhHHHH-HHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 444445555555554444434 4556677776665332 24459999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhh--hcc----hHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhh
Q psy16660 168 LITVFVTCLPIPL--MTL----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWW 240 (594)
Q Consensus 168 ~~~~~~~~i~~~~--~~~----~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~ 240 (594)
.++.++.+++..+ ... +.+.+++.+++.|++ +...+....++.|.+|+++|++++|+
T Consensus 285 ~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~---------------- 348 (418)
T TIGR00889 285 LLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGL---------------- 348 (418)
T ss_pred HHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH----------------
Confidence 9998887776544 221 245667789999998 55667778899999999999999998
Q ss_pred HHHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchh-HHHhhHHHHHHHHHHHHHHh------cChHHHHH
Q psy16660 241 FFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVS-ATFAASMVFSPALGAYLEKT------YSLSLVVA 313 (594)
Q Consensus 241 ~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~-~~~~~g~~igp~l~~~l~~~------~gw~~~f~ 313 (594)
.+ ...++|.++||.++|++.++ +||+..|.
T Consensus 349 -------------------------------------------~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~ 385 (418)
T TIGR00889 349 -------------------------------------------FTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWL 385 (418)
T ss_pred -------------------------------------------HHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHH
Confidence 86 56789999999999999987 46999999
Q ss_pred HHHHHHHHHHHHhheeccCCCch
Q psy16660 314 VATAVAILDVFFILVAVPESLPE 336 (594)
Q Consensus 314 ~~~~~~ll~~~~~~~~l~e~~~~ 336 (594)
+.+++.++..++.++++||+.+.
T Consensus 386 ~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 386 FFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHHHHHHHHHHHHHHhCCcccC
Confidence 99888888888888888887443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-11 Score=131.06 Aligned_cols=144 Identities=13% Similarity=0.112 Sum_probs=124.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhH
Q psy16660 376 FLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQM 455 (594)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~ 455 (594)
++............|.+. +.+|.++.+.++..+...++..++.++.|++.||+|+|+.+..+.++.+++.+++...++.
T Consensus 15 ~~~~~~~~~~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 93 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIA-ADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNI 93 (385)
T ss_pred HHHHHHHHHhcccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccH
Confidence 333333344444455554 4579999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 456 WMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 456 ~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
+.+++..++.|++ +...+...+++.|..|+++|+++.|..+....+|..++|.+.+.+.+..|++
T Consensus 94 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 159 (385)
T TIGR00710 94 ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWH 159 (385)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 8888888899998 7888999999999999999999999999999999999999999998876654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=131.74 Aligned_cols=150 Identities=12% Similarity=0.116 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q psy16660 368 ILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLM 447 (594)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~ 447 (594)
+....+..+...+.........+. +++.+|.++.+.++..+...++..++.++.|++.||+|||+.+..+.++.+++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~ 92 (405)
T TIGR00891 14 FSAAWLGWLLDAFDFFLVALVLAE-VAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTL 92 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 344444455555444444444454 4556899999999999999999999999999999999999999999999999988
Q ss_pred HHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy16660 448 WYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 448 ~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g 518 (594)
+..+.++.+.+++..++.|++ +...+...+++.|..|+++|+++.++.+....+|..+++.+.+.+.+..+
T Consensus 93 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 164 (405)
T TIGR00891 93 ACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164 (405)
T ss_pred HHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888899888888999998 88889999999999999999999999999999999999999999887654
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-11 Score=131.20 Aligned_cols=157 Identities=14% Similarity=0.136 Sum_probs=129.5
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q psy16660 364 KDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEM 443 (594)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~ 443 (594)
.++.++.+.+..++...........+|.|+++.+|.|+.+.|+..+...++..+++++.|++.||+|||+.+..+.+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~ 92 (392)
T PRK12382 13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACG 92 (392)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHH
Confidence 45566666667777777666677788888888899999999999999999999999999999999999999998877766
Q ss_pred HHHHHHh---h-----hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16660 444 LQLMWYG---F-----GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIF 514 (594)
Q Consensus 444 i~~~~~~---~-----~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~ 514 (594)
++.+.+. . .++.+.+++..++.|++ +...+...+++.+..|+++|+++++..+...+++..++|.+.+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~ 172 (392)
T PRK12382 93 LAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH 172 (392)
T ss_pred HHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5543221 1 24566777778888988 7777888888999999999999999999999999999999999998
Q ss_pred HHhhcc
Q psy16660 515 YMFHVD 520 (594)
Q Consensus 515 ~~~g~~ 520 (594)
+..|+.
T Consensus 173 ~~~g~~ 178 (392)
T PRK12382 173 SHFGFA 178 (392)
T ss_pred hccChH
Confidence 876543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-11 Score=126.85 Aligned_cols=176 Identities=18% Similarity=0.166 Sum_probs=160.3
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q psy16660 365 DQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEML 444 (594)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i 444 (594)
...++.+.++.|.....++.....+|...++ +|.+..++|...+.++++..++.++...+.+|+.||+++...+.+..+
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~d-l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~ 90 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAAD-LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 4556777888888888888888899998887 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCC
Q psy16660 445 QLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSD 523 (594)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~ 523 (594)
+.++..+.++++.+.++-++.++. +.+++...+...+.+|+++|+++.+++.....++..+|.+++.++-|.+|++
T Consensus 91 ~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR--- 167 (394)
T COG2814 91 SNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWR--- 167 (394)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHH---
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHH-Hhcc
Q psy16660 524 GPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVA-TFIP 569 (594)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~ 569 (594)
..|...+.+.+++.+.. ..+|
T Consensus 168 -------------------------~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 168 -------------------------ATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHhCC
Confidence 77877766666665554 4455
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-11 Score=127.94 Aligned_cols=151 Identities=17% Similarity=0.271 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q psy16660 367 TILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQL 446 (594)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~ 446 (594)
.++..++..++.+........+.|.++++.+|+++.+.+++.+...++.+++.++.|++.||+|+|+.+..+.++..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPC 81 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 34556666666666666677777777888899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhh-hHHHHHHHHHHHHHhhchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy16660 447 MWYGFGS-QMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMF 517 (594)
Q Consensus 447 ~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~ 517 (594)
+++.+.+ +.+.+++..++.|+++...+....++.+..|+++|+++.++.....++|..+++.+.+.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~ 153 (366)
T TIGR00886 82 LWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSL 153 (366)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9888888 8888888888888874345667788999999999999999999999999999998888877653
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-11 Score=132.10 Aligned_cols=157 Identities=16% Similarity=0.153 Sum_probs=133.4
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q psy16660 364 KDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEM 443 (594)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~ 443 (594)
.++++..+++..++..+........+|.++++.+|.++.+.|+..+...++..+++++.|++.||+|||+++..+.++.+
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~ 92 (399)
T PRK05122 13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCA 92 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHH
Confidence 46777888888888888878888899999888899999999999999999999999999999999999999999988777
Q ss_pred HHHHHHhhh---h-----hHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16660 444 LQLMWYGFG---S-----QMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIF 514 (594)
Q Consensus 444 i~~~~~~~~---~-----~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~ 514 (594)
++.+.+... + +.+.+++..++.|++ +...+...+++.+..|+++|+++.++......+|..+++.+++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~ 172 (399)
T PRK05122 93 LSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY 172 (399)
T ss_pred HHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 665443332 1 344566677788888 7778888888899999999999999999999999999999999998
Q ss_pred HHhhcc
Q psy16660 515 YMFHVD 520 (594)
Q Consensus 515 ~~~g~~ 520 (594)
+..|+.
T Consensus 173 ~~~g~~ 178 (399)
T PRK05122 173 HWGGLA 178 (399)
T ss_pred HcccHH
Confidence 876654
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-11 Score=132.38 Aligned_cols=177 Identities=14% Similarity=0.200 Sum_probs=142.8
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHH
Q psy16660 365 DQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVL-GAKHTIIIGLVFEM 443 (594)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~ 443 (594)
.+.++.++...+...+.++++..++|.|+++.+|+++.+++.+...+.....++.+++|+++||+ |+|+.+.++.++..
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~ 87 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMA 87 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHH
Confidence 45567777777777888888999999999998999999999999999999899999999999999 99999999999999
Q ss_pred HHHHHHhhhh-hHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCc--cchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Q psy16660 444 LQLMWYGFGS-QMWMMWAAGILASLA-SITYPAISALVSMHSDAD--RQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHV 519 (594)
Q Consensus 444 i~~~~~~~~~-~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~ 519 (594)
++.+++...+ +....+....+..++ +...+...+++.|.+|++ +|+++.++.....++|+.++|.+.|++.+..|+
T Consensus 88 lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw 167 (493)
T PRK15462 88 IGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSW 167 (493)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhCh
Confidence 8887765432 223344444455566 566677788999999875 699999999999999999999999999887775
Q ss_pred cCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhcc
Q psy16660 520 DLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIP 569 (594)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 569 (594)
+ ..|.++++..+++++..+..+
T Consensus 168 ~----------------------------~~F~iaaigm~l~li~~~~~~ 189 (493)
T PRK15462 168 A----------------------------MGFGLAAVGMIAGLVIFLCGN 189 (493)
T ss_pred H----------------------------HHHHHHHHHHHHHHHHHHHhh
Confidence 5 678777766666665554433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-11 Score=130.12 Aligned_cols=131 Identities=11% Similarity=0.078 Sum_probs=119.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q psy16660 389 LFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA 468 (594)
Q Consensus 389 ~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~ 468 (594)
.|.+ .+.+|.++.+.|+..+...++..++.+..|.+.||+|+|+++..+..+.+++.++..+.++.+.+++..++.|++
T Consensus 32 ~~~l-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~ 110 (390)
T PRK03545 32 LSDI-AQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFA 110 (390)
T ss_pred hHHH-HhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4544 456899999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred -hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 469 -SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 469 -~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
+...+...+++.+..|+++|++++|+......+|..++|++.+.+.+..|++
T Consensus 111 ~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~ 163 (390)
T PRK03545 111 HAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWR 163 (390)
T ss_pred HHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHH
Confidence 7778888999999999999999999999999999999999999998887765
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-11 Score=133.41 Aligned_cols=154 Identities=15% Similarity=0.147 Sum_probs=136.3
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q psy16660 366 QTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQ 445 (594)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~ 445 (594)
+.++.+....++...........+|.+.++ +|.++.+.++..+...++..++.++.|++.||+|+|+.+..+..+.+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 88 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG 88 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 456677777777777777778888888876 7999999999999999999999999999999999999999998888888
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 446 LMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
.++..+.++.+.+++..++.|++ +...+...+++.+.+|+++++++.|..+...++|..++|.+.|.+.+..|++
T Consensus 89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~ 164 (471)
T PRK10504 89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWH 164 (471)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHH
Confidence 88877888888888888999998 7788889999999999999999999999999999999999999999877655
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-12 Score=116.99 Aligned_cols=134 Identities=24% Similarity=0.363 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccc
Q psy16660 140 MGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEH 216 (594)
Q Consensus 140 ~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~ 216 (594)
.+.+.++..++.++.|++.||+|||+.+..+.....++.+. ...+++.+.+.+++.|++ +...+...+++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34567788899999999999999999998887777666555 456888999999999998 667778889999999999
Q ss_pred cccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHH
Q psy16660 217 ERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSP 296 (594)
Q Consensus 217 ~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp 296 (594)
+|++..++ .+....+|..++|
T Consensus 84 ~~~~~~~~-----------------------------------------------------------~~~~~~~g~~~~~ 104 (141)
T TIGR00880 84 ERGVALGL-----------------------------------------------------------MSAGIALGPLLGP 104 (141)
T ss_pred hhhHHHHH-----------------------------------------------------------HHHhHHHHHHHhH
Confidence 99999999 8999999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccC
Q psy16660 297 ALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPE 332 (594)
Q Consensus 297 ~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e 332 (594)
.+++++.+..+|++.+++.++..++..+..++..||
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 105 PLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999988899999999888877777766665665
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.4e-12 Score=131.36 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=120.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-h
Q psy16660 391 VYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-S 469 (594)
Q Consensus 391 ~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~ 469 (594)
.++++.+|.++.+.+++.+...++.+++.++.|++.||+|||+.+..+.++.+++..++.+.++.+.+++..++.|++ +
T Consensus 18 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 97 (399)
T TIGR00893 18 PMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEA 97 (399)
T ss_pred HHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 446666899999999999999999999999999999999999999999999999988888888999999999999999 8
Q ss_pred chHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 470 ITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 470 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
...+....++.|.+|+++|++++++.+...++|..+++.+.+.+.+..+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 148 (399)
T TIGR00893 98 PFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQ 148 (399)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCch
Confidence 888999999999999999999999999999999999999999998876654
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-11 Score=128.46 Aligned_cols=134 Identities=10% Similarity=0.075 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy16660 386 YSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILA 465 (594)
Q Consensus 386 ~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 465 (594)
...+|.+.+ .+|+++.+.|+..+...++..++.++.|++.||+|||+.+..+.++.+++.++..+.++.+.+++..++.
T Consensus 40 ~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 118 (394)
T PRK10213 40 VSLLTPMAQ-DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACL 118 (394)
T ss_pred HhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 335556554 4799999999999999999999999999999999999999999999999988888888999999999999
Q ss_pred HHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 466 SLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 466 g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
|++ +...+...+++.|.+|+++|+++.+......++|..++|.+++.+.+..|++
T Consensus 119 G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~ 174 (394)
T PRK10213 119 GLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWR 174 (394)
T ss_pred HHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Confidence 998 7788999999999999999999999999999999999999999999887765
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.9e-11 Score=132.78 Aligned_cols=157 Identities=13% Similarity=0.125 Sum_probs=129.8
Q ss_pred cch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHH
Q psy16660 364 KDQ-TILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNV-LGAKHTIIIGLVF 441 (594)
Q Consensus 364 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~l~~~~~~ 441 (594)
++| .++..+...++..+.++....+++.|+++.+|++..+.+..............+++|++.|| +|+|+.+..+.++
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~ 97 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV 97 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 555 58888888888888888999999999999999999998888777665555666789999999 5999999999999
Q ss_pred HHHHHHHHhhhh-hHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCcc--chHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy16660 442 EMLQLMWYGFGS-QMWMMWAAGILASLA-SITYPAISALVSMHSDADR--QGLVQGMVTGMRGLCNGLGPAMFGLIFYMF 517 (594)
Q Consensus 442 ~~i~~~~~~~~~-~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~--~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~ 517 (594)
.+++..++.+.+ +.+.++++..+.+++ +...+...+++.+.+|+++ ++.+.++.+...++|..++|.+.|++.+..
T Consensus 98 ~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~ 177 (500)
T PRK09584 98 LAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY 177 (500)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 998888877754 445556666778888 7777888889999997643 456788889999999999999999999987
Q ss_pred hcc
Q psy16660 518 HVD 520 (594)
Q Consensus 518 g~~ 520 (594)
|++
T Consensus 178 g~~ 180 (500)
T PRK09584 178 GWS 180 (500)
T ss_pred CHH
Confidence 765
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-11 Score=128.84 Aligned_cols=155 Identities=13% Similarity=0.102 Sum_probs=135.9
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q psy16660 365 DQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEML 444 (594)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i 444 (594)
++.++.++...++...........+|.+.+ .+|++..+.|+..+...++.+++.++.|++.||+|+|+.+..+..+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 2 KKVILSLALGTFGLGMAEFGIMGVLTELAH-DVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVI 80 (382)
T ss_pred cchHHHHHHHHHHHHhhHHHHHhChHHHHH-HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHH
Confidence 355667777777777777777777777655 4799999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 445 QLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
+.++..+.++.+.+++..++.|++ +...+.....+.+..|+++|+++.+.......++..++|.+.+.+.+..|++
T Consensus 81 ~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr 157 (382)
T PRK10091 81 GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWR 157 (382)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHH
Confidence 999999999999999999999998 7777888888899999999999999999999999999999999998876655
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-11 Score=128.16 Aligned_cols=148 Identities=12% Similarity=0.116 Sum_probs=124.3
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q psy16660 365 DQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEML 444 (594)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i 444 (594)
+|.++.+++..++..+.........+.+. ..++.++.+.+++.+.+.+...+..++.|++.||+|||+++..+.++.++
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~ 80 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALL-KELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLL 80 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHH
Confidence 45677777777777776555555555554 44688888999999999999999999999999999999999999988887
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16660 445 QLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYM 516 (594)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~ 516 (594)
+.+.+....+. ++..++.|++ +...|...+++.|.+|+++|++++|+.+...+++..+||.++|.+.+.
T Consensus 81 ~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~ 150 (393)
T PRK11195 81 GCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP 150 (393)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766555443 4455678888 888999999999999999999999999999999999999999999885
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-11 Score=127.19 Aligned_cols=165 Identities=14% Similarity=0.096 Sum_probs=133.3
Q ss_pred HHhhhhHHHHHHHH--HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy16660 379 YLPEAGQYSCLFVY--LKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMW 456 (594)
Q Consensus 379 ~~~~~~~~~~~~~~--~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~ 456 (594)
...+.....+.|.+ +++.+|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..++.++..+.++.+
T Consensus 16 ~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 95 (401)
T PRK11043 16 MLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAA 95 (401)
T ss_pred HHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 33334444455544 4566899999999999999999999999999999999999999999988888888888888888
Q ss_pred HHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCccccc
Q psy16660 457 MMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANR 535 (594)
Q Consensus 457 ~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 535 (594)
.+.+..++.|++ +...+...+++.+.+|++++++..+..+....++..++|.+.+.+.+..|++
T Consensus 96 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~--------------- 160 (401)
T PRK11043 96 QLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQ--------------- 160 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH---------------
Confidence 888888888887 6666777888899999999999999999999999999999999999877655
Q ss_pred CCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhccCc
Q psy16660 536 TNNVNSYPSVIPGPPFVFGALLVIAALLVATFIPES 571 (594)
Q Consensus 536 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 571 (594)
..|.+.+++.++..+..++.++.
T Consensus 161 -------------~~~~~~~~~~~~~~~~~~~~~~~ 183 (401)
T PRK11043 161 -------------AIFATLFAITLLLILPTLRLKPS 183 (401)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHcCCC
Confidence 66766665555555555555443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-11 Score=131.73 Aligned_cols=177 Identities=15% Similarity=0.133 Sum_probs=146.8
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHH
Q psy16660 365 DQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNV-LGAKHTIIIGLVFEM 443 (594)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~ 443 (594)
.+.++.++...+...+.+++...+++.|+++.+|++..+.+++...+.....+..+++|++.|| +|||+++..+.++..
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~ 92 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLA 92 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHH
Confidence 4557777777788888889999999999999999999999988888887777888899999999 999999999999999
Q ss_pred HHHHHHhhhhhHH-HHHHHHHHHHHh-hchHhHHHHHHhhcCCCc--cchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Q psy16660 444 LQLMWYGFGSQMW-MMWAAGILASLA-SITYPAISALVSMHSDAD--RQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHV 519 (594)
Q Consensus 444 i~~~~~~~~~~~~-~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~ 519 (594)
++.+++.+..+.. .++++.++.++| +...|...+++.|.+|++ +|+.++++.....++|.+++|.+.|++.++.|+
T Consensus 93 ~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw 172 (489)
T PRK10207 93 IGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGY 172 (489)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence 9998888765533 344677778888 788888899999999877 457899999999999999999999999998776
Q ss_pred cCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhcc
Q psy16660 520 DLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIP 569 (594)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 569 (594)
+ ..|.++.+..+++++.....+
T Consensus 173 ~----------------------------~~F~i~~i~~~~~~~~~~~~~ 194 (489)
T PRK10207 173 S----------------------------VTYNLCGAGLIIALLVYFACR 194 (489)
T ss_pred H----------------------------HHHHHHHHHHHHHHHHHHHcc
Confidence 5 678777665555555554444
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.8e-11 Score=128.74 Aligned_cols=142 Identities=14% Similarity=0.099 Sum_probs=122.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh
Q psy16660 373 VTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFG 452 (594)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~ 452 (594)
+..++.+.-........ ..+++.+|++..+.|+..+.+.++..++.++.|++.||+|+|+.+..+.++..++.++..+.
T Consensus 15 ~~~~~~~~d~~~~~~~~-~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~ 93 (412)
T TIGR02332 15 ILFIFSFLDRINIGFAG-LTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA 93 (412)
T ss_pred HHHHHHHhhhhhHHHHH-HhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333334 46777799999999999999999999999999999999999999999999999999999888
Q ss_pred hhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16660 453 SQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFY 515 (594)
Q Consensus 453 ~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~ 515 (594)
++.+.+++.-++.|++ +...+....++.|.+|+++||++.|+.+....+|..+++.+.+.+.+
T Consensus 94 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 157 (412)
T TIGR02332 94 TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA 157 (412)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999888889999999 77888888999999999999999999999999999999999998875
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.5e-11 Score=128.08 Aligned_cols=124 Identities=11% Similarity=0.148 Sum_probs=105.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hc
Q psy16660 392 YLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SI 470 (594)
Q Consensus 392 ~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~ 470 (594)
++++.+|++..+.++..+...++..++.++.|++.||+|+|+.+..+.++.+++.++.++.++.+.+++..++.|++ +.
T Consensus 61 ~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~ 140 (476)
T PLN00028 61 IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLAT 140 (476)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 45666899999999998889999999999999999999999999999988888888888888888877777788887 43
Q ss_pred hHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16660 471 TYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYM 516 (594)
Q Consensus 471 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~ 516 (594)
. .....++.+.+|+++||++.|+.+...++|..+++.+.+.+.+.
T Consensus 141 ~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~ 185 (476)
T PLN00028 141 F-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPL 185 (476)
T ss_pred h-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34556788999999999999999999899999888887766553
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.4e-12 Score=130.54 Aligned_cols=184 Identities=20% Similarity=0.290 Sum_probs=152.8
Q ss_pred hhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q psy16660 357 ASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTII 436 (594)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~ 436 (594)
....+++.++....+.+...+..+....+.+++.-++++. +..+...|...+..-.+.++.-++.+++.+|+|+-+++.
T Consensus 362 a~~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~-~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~ 440 (618)
T KOG3762|consen 362 ADVGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDL-GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMY 440 (618)
T ss_pred HHHHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceee
Confidence 3444566777777676777777777777778888888874 666677787777788888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHH-HHHHHhHHHHHHHHHH
Q psy16660 437 IGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGM-RGLCNGLGPAMFGLIF 514 (594)
Q Consensus 437 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~-~~lg~~lg~~~~g~l~ 514 (594)
.++.+..+-++.+....++|.....-++-|+. +..|.+..++++...||+.+++++++.... ..+|-.+|+.++|.+.
T Consensus 441 lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v 520 (618)
T KOG3762|consen 441 LGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVV 520 (618)
T ss_pred ehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhh
Confidence 99999999999999999999999999999999 999999999999999999999999998865 4689999999999999
Q ss_pred HHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhcc
Q psy16660 515 YMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIP 569 (594)
Q Consensus 515 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 569 (594)
+.+|.. ..|...++.+++.++....+.
T Consensus 521 ~~fg~~----------------------------ttf~~~giAcl~~l~~~~~iq 547 (618)
T KOG3762|consen 521 ERFGAR----------------------------TTFRIFGIACLVTLALFISIQ 547 (618)
T ss_pred eeehhH----------------------------HHHHHHHHHHHHHHHHHHHhh
Confidence 887755 677777666666665554443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-11 Score=131.91 Aligned_cols=150 Identities=14% Similarity=0.140 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q psy16660 370 MLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWY 449 (594)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~ 449 (594)
.+++..++..+.........|.+.++ +|.++.+.++..+.+.++.+++.++.|++.||+|||+.+..+.++..++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 84 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLC 84 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 34444555555545555566666554 79999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 450 GFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 450 ~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
...++.+.+++..++.|++ +...+...+++.+.+|+++|+++.++......+|..++|.+.+.+.+..|++
T Consensus 85 ~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~ 156 (485)
T TIGR00711 85 GVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWR 156 (485)
T ss_pred hCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCce
Confidence 9999999999999999998 7888999999999999999999999999999999999999999998876654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-09 Score=110.93 Aligned_cols=330 Identities=12% Similarity=0.055 Sum_probs=231.7
Q ss_pred hhhHHHHHHhh--CCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHH
Q psy16660 117 TMPIISVLNRT--FPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMI 192 (594)
Q Consensus 117 ~~~~~~~~~~~--~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r 192 (594)
.-|++..|..+ .+.+..+...-+.-+..-.++...++...+.|..|.|++++++.+...+...+ +..+.+.+-+..
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q 101 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQ 101 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHH
Confidence 35555555544 45566666667777777788888999999999999999999887776655444 778999999999
Q ss_pred HHHHHHhHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhh
Q psy16660 193 SISGVFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERS 272 (594)
Q Consensus 193 ~l~Gi~~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~ 272 (594)
++.|++.+...+.++++-...|+++-.++.+.
T Consensus 102 ~~yg~~~a~evay~sYiys~v~~~~yq~vts~------------------------------------------------ 133 (412)
T PF01770_consen 102 FFYGLATAAEVAYYSYIYSVVDKEHYQKVTSY------------------------------------------------ 133 (412)
T ss_pred HHHHHHHHHHHHHHHHheeecCHHHHHHHHHH------------------------------------------------
Confidence 99999977788889999999999988888888
Q ss_pred hhhcccccccchhHHHhhHHHHHHHHHHHHHH--hcChHHHHHHHHHHHHHHHHHhheeccCCCchh---hcc-------
Q psy16660 273 LAYGLSFSFSQVSATFAASMVFSPALGAYLEK--TYSLSLVVAVATAVAILDVFFILVAVPESLPEK---VRQ------- 340 (594)
Q Consensus 273 ~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~--~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~---~~~------- 340 (594)
..++.-+|..++.++|..+.. ..+++....+......+++++.+ ++|..++.. ++.
T Consensus 134 -----------~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~-fLP~~~~S~~f~r~~~~~~~~~ 201 (412)
T PF01770_consen 134 -----------TRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIAL-FLPMPKRSLFFHRKPPAEQDAN 201 (412)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HcCCCCcccceeccCccccccc
Confidence 888888888888888887776 34566666666654455444433 466544210 000
Q ss_pred ---CCCCCC--CCc----cc----c-------CCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--hC
Q psy16660 341 ---ASWGGA--PIS----WE----Q-------ADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLV--MG 398 (594)
Q Consensus 341 ---~~~~~~--~~~----~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g 398 (594)
.+..+. +.+ .+ . ...+++++...++|.++...+-..+...+.....++......+. -+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~ 281 (412)
T PF01770_consen 202 ESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSD 281 (412)
T ss_pred cccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCC
Confidence 000000 000 00 0 01134566667888888877777777666666666666555553 12
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH--HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHH
Q psy16660 399 FDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHT--IIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAI 475 (594)
Q Consensus 399 ~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~--l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~ 475 (594)
-...-.|.+-+...+.+.++.+..|.+..++.+..- +....++.+..++++...++.|..+++.++++.. .+..+..
T Consensus 282 ~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA 361 (412)
T PF01770_consen 282 NESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIA 361 (412)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233345788888888888888999998666655333 3334555667777888899999999999988887 7777888
Q ss_pred HHHHhhcCCCccchHHHHHHHHHHHHHHhHH
Q psy16660 476 SALVSMHSDADRQGLVQGMVTGMRGLCNGLG 506 (594)
Q Consensus 476 ~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg 506 (594)
...++....++.-|...|+++++..+-+.+-
T Consensus 362 ~~qIA~~l~~e~yaLVFGiNtf~Al~LQtil 392 (412)
T PF01770_consen 362 SFQIAKNLSEERYALVFGINTFVALVLQTIL 392 (412)
T ss_pred HHHHHHhccccceeeeeeeHHHHHHHHHHhe
Confidence 8888888888999999999888766555443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5e-11 Score=127.15 Aligned_cols=154 Identities=16% Similarity=0.207 Sum_probs=128.8
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhH-----HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q psy16660 366 QTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVH-----VAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLV 440 (594)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~ 440 (594)
+.+..+.+..++..........++|.|.++ +|.+..+ .|...+...+...++.++.|++.||+|+|+.+..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 92 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQ-LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSAL 92 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence 445555666666666666777788888876 6887554 4888889999999999999999999999999999998
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 441 FEMLQLMWYGFGSQMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 441 ~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
+.+++.+++...++.+.+++..++.|+++...+....++.+..|+++|+++.|..+....+|..++|.+.+.+.+..|++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 172 (408)
T PRK09874 93 GMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLR 172 (408)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 88888888888888888888888888874456777888889999999999999999999999999999999998877654
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.7e-11 Score=130.49 Aligned_cols=152 Identities=13% Similarity=0.168 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q psy16660 368 ILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLM 447 (594)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~ 447 (594)
+..+++..++...-.......+|.+..+ +|.+..+.++..+.+.++.....+..|++.||+|||+.+..+.++..++.+
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~ 86 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL 86 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4455566666666666666677777655 799999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcC-CCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 448 WYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHS-DADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 448 ~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
+.+..++.+.++++-++.|++ +...+.....+.+.+ |+++|++++|+......+|..+||.++|.+.+..|++
T Consensus 87 ~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr 161 (495)
T PRK14995 87 AAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWG 161 (495)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChH
Confidence 999999999999999999998 777777777676654 6789999999999999999999999999999887765
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.1e-11 Score=128.04 Aligned_cols=151 Identities=10% Similarity=0.085 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q psy16660 369 LMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMW 448 (594)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~ 448 (594)
....+..+...+.........| ++++.+|+++.+.++..+...++..++.++.|++.||+|||+.+..+.++.+++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~ 99 (426)
T PRK12307 21 FSAWLGYVFDGFDFMLIFYIMY-LIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGL 99 (426)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 3333333433333333333333 445668999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 449 YGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 449 ~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
..+.++.+.+++.-++.|++ +..++....++.|..|+++|+++.++......+|..+++.+.+.+.+..|++
T Consensus 100 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~ 172 (426)
T PRK12307 100 SGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWR 172 (426)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHH
Confidence 98999999999999999998 8888999999999999999999999999999999999999988887766554
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.2e-11 Score=124.73 Aligned_cols=151 Identities=13% Similarity=0.144 Sum_probs=135.5
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q psy16660 365 DQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEML 444 (594)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i 444 (594)
++.++.+....++...........+|.|.++ +|.+..+.|+..+...++..++.++.|++.||+|+|+.+..+.++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~ 83 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQ-EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAA 83 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888899999886 699999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16660 445 QLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYM 516 (594)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~ 516 (594)
+..+..+.++.+.+.+..++.|++ +...+...+.+.+..++++|+++++..+...++|..+||.+.+.+.+.
T Consensus 84 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 84 GCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 998888888999888888899998 777788877788888889999999999999999999999999988654
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-11 Score=128.36 Aligned_cols=133 Identities=15% Similarity=0.178 Sum_probs=118.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy16660 387 SCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILAS 466 (594)
Q Consensus 387 ~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g 466 (594)
...|.+ .+.+|.++.+.+++.+...++.+++.++.|++.||+|||+.+..+.++..++.+++...++.+.+++..++.|
T Consensus 38 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 116 (398)
T TIGR00895 38 FAAPAI-SAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAG 116 (398)
T ss_pred hhHHHH-hhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHh
Confidence 344444 4457999999999999999999999999999999999999999999998888888888888888888888899
Q ss_pred Hh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 467 LA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 467 ~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
++ +...+...+++.|..|+++|+++.++.+....+|..+++.+.+.+.+..|++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~ 171 (398)
T TIGR00895 117 LGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWR 171 (398)
T ss_pred cccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccce
Confidence 98 8888999999999999999999999999999999999999999998876654
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=9e-11 Score=124.79 Aligned_cols=148 Identities=16% Similarity=0.151 Sum_probs=123.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhh
Q psy16660 372 CVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGF 451 (594)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~ 451 (594)
....+............+|.+.++ +|.+..+.++..+...++..++.++.|++.||+|||+.+..+.++..++..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~ 87 (392)
T PRK10473 9 FALVLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL 87 (392)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444455555554 7999999999999999999999999999999999999999999999999888888
Q ss_pred hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 452 GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 452 ~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
.++.+.+++..++.|++ +...+...+++.+..|+++|+++.+..+....++..++|.+++.+.+..|++
T Consensus 88 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~ 157 (392)
T PRK10473 88 AETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQ 157 (392)
T ss_pred hCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChH
Confidence 88888888888888888 7778888999999999999999999999999999999999998887765544
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7e-11 Score=129.66 Aligned_cols=153 Identities=12% Similarity=0.176 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q psy16660 367 TILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQL 446 (594)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~ 446 (594)
.+..+.+..++..+.........|. +.+.+|.++.+.++..+...++.+++.++.|++.||+|||+.+..+.++.+++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 99 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTE-VQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGT 99 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 3444455555555554444444554 445689999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 447 MWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 447 ~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
+++.+.++.+.+++..++.|++ +...+....++.+.+|+++|+++.++.....++|..++|.+.+.+.+..|++
T Consensus 100 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~ 174 (496)
T PRK03893 100 LACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWR 174 (496)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 9888888888888888999998 7788889999999999999999999999999999999999999998766654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-10 Score=131.68 Aligned_cols=166 Identities=13% Similarity=0.093 Sum_probs=136.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-h
Q psy16660 391 VYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-S 469 (594)
Q Consensus 391 ~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~ 469 (594)
..+...+|.+..+.+++.+...++.+++.++.|+++||+|||+.+++++++.+++.++..+.++.+.++++-++.|++ +
T Consensus 191 p~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g 270 (742)
T TIGR01299 191 PSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIG 270 (742)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344555899999999999999999999999999999999999999999999988888888888888888999999999 8
Q ss_pred chHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCCh
Q psy16660 470 ITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGP 549 (594)
Q Consensus 470 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (594)
...+...+++.|.+|++.||+..++.+....+|.++++.++..+....|+.... ...+...++..
T Consensus 271 ~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~---------------g~~~~~~gWR~ 335 (742)
T TIGR01299 271 GAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQM---------------GSAYQFHSWRV 335 (742)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcc---------------ccccccccHHH
Confidence 888999999999999999999999999999999999999988888766643110 00011223456
Q ss_pred hHHHHHHHHHHHHHHHHhccCc
Q psy16660 550 PFVFGALLVIAALLVATFIPES 571 (594)
Q Consensus 550 ~f~~~~~~~~~~~~~~~~~~~~ 571 (594)
.+++.++..++.++..+++|+.
T Consensus 336 l~~i~~lp~ll~ll~~~~lPES 357 (742)
T TIGR01299 336 FVIVCAFPCVFAIGALTFMPES 357 (742)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 6777777767776666777765
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-10 Score=123.58 Aligned_cols=147 Identities=10% Similarity=0.072 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q psy16660 368 ILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLM 447 (594)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~ 447 (594)
.+..++..++...........+|.+. +.+|++..+.++..+...++..++.++.|++.||+|+|+.+..+.++.+++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 87 (394)
T PRK03699 9 TWISFLSYALTGALVIVTGMVMGPIA-EYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVA 87 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44444444444444444555566655 45899999999999999999999999999999999999999999999999988
Q ss_pred HHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16660 448 WYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFY 515 (594)
Q Consensus 448 ~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~ 515 (594)
+..+.++.+.+++..++.|++ +...+...+++.+..|+++|+.+.+..+....+++.++|.+.+.+.+
T Consensus 88 l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 156 (394)
T PRK03699 88 GLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA 156 (394)
T ss_pred HHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888888888 77778888889999999999999999988889999999999988765
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=125.96 Aligned_cols=153 Identities=10% Similarity=0.187 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q psy16660 367 TILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQL 446 (594)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~ 446 (594)
.+....+.+..+++.--.+....| ++.+..++|..|.|.+.+.+.+..-++-++.|.++||.++|+.+..|+++.++..
T Consensus 30 if~~~fiGYa~fYl~RknF~~a~p-~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~n 108 (448)
T COG2271 30 IFLSIFIGYAAFYLTRKNFNLAMP-ALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVN 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHhHhhccH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHH
Confidence 344444555555555444444444 4455568999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHH--HHHHHHhhcc
Q psy16660 447 MWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMF--GLIFYMFHVD 520 (594)
Q Consensus 447 ~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~--g~l~~~~g~~ 520 (594)
+++++.++.+.+.+...+.|+. +..+|.....+..-+|+++||+..++-++..++|+.+.|++. +.+.++.+++
T Consensus 109 il~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~ 185 (448)
T COG2271 109 ILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWR 185 (448)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchh
Confidence 9999999999999999999999 999999999999999999999999999999999999999999 8877765554
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-10 Score=124.66 Aligned_cols=154 Identities=14% Similarity=0.135 Sum_probs=125.8
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q psy16660 365 DQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEML 444 (594)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i 444 (594)
.+.+....+..++..........+.+.+.++ +|.++.+.|+..+.+.++..++.++.|++.||+|+|+.+..+..+.++
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~ 90 (402)
T TIGR00897 12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLKA-LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCV 90 (402)
T ss_pred CchhhHHHHHHHHHHHhhhhHHHhHHHHHHH-hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 4566666777777777777777788888865 799999999999999999999999999999999999999999888887
Q ss_pred HHHHHh---h-hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHH-hHHHHHHHHHHHHhh
Q psy16660 445 QLMWYG---F-GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCN-GLGPAMFGLIFYMFH 518 (594)
Q Consensus 445 ~~~~~~---~-~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~-~lg~~~~g~l~~~~g 518 (594)
+.++.. . .++.+.+++..++.|++ +...+.....+.+..|+++|++++|+.+...++|. .++|.+.+.+.+..|
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g 170 (402)
T TIGR00897 91 GHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG 170 (402)
T ss_pred HHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 765442 2 24566666677777877 66667777788888999999999999999999997 578998888887666
Q ss_pred c
Q psy16660 519 V 519 (594)
Q Consensus 519 ~ 519 (594)
+
T Consensus 171 ~ 171 (402)
T TIGR00897 171 E 171 (402)
T ss_pred h
Confidence 4
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.4e-11 Score=125.52 Aligned_cols=148 Identities=13% Similarity=0.034 Sum_probs=123.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhh
Q psy16660 372 CVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGF 451 (594)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~ 451 (594)
....++............|.+.+ .+|+++.+.++..+...++.+++.++.|++.||+|+|+.+..+.++..++.++..+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 99 (406)
T PRK11551 21 FLVALLEGLDLQSAGVAAPRMAQ-EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQ 99 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555554 47999999999999999999999999999999999999999999888888888888
Q ss_pred hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 452 GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 452 ~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
.++.+.+.+..++.|++ +...+...+++.|.+|+++|++++++.+....+|..+++.+.+.+.+..+++
T Consensus 100 ~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 169 (406)
T PRK11551 100 AWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWR 169 (406)
T ss_pred hccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 88888888888899998 7888899999999999999999999999999999999999888776654443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-10 Score=122.49 Aligned_cols=172 Identities=17% Similarity=0.285 Sum_probs=131.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH-HHHHHHHHHHHHHh
Q psy16660 372 CVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTII-IGLVFEMLQLMWYG 450 (594)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~-~~~~~~~i~~~~~~ 450 (594)
.+..++..+........+|.|+++.+|.++.+.|++.+...+..++..++.|++.||+|+|+.++ .+.++..++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence 34456666677777888899998889999999999999999999999999999999999887655 45555566667777
Q ss_pred hhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHH--HHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCC
Q psy16660 451 FGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLV--QGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDV 527 (594)
Q Consensus 451 ~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~--~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~ 527 (594)
+.++.+.+++..++.+.+ +...|...++..+..|++.|+.+ .+......++|..++|.+.+.+.+..|++
T Consensus 83 ~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~------- 155 (375)
T TIGR00899 83 WNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFT------- 155 (375)
T ss_pred hcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccH-------
Confidence 778877776666666655 66678888888888877766654 67788888999999999999998876655
Q ss_pred CCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHH-HhccCc
Q psy16660 528 GPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVA-TFIPES 571 (594)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~ 571 (594)
..|.+.+++.++..+.. +.+|+.
T Consensus 156 ---------------------~~f~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T TIGR00899 156 ---------------------VMFLTAALAFVLCGVLVWLFLPSY 179 (375)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHhCCCc
Confidence 67777766655554444 345554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-10 Score=121.71 Aligned_cols=164 Identities=14% Similarity=0.106 Sum_probs=143.0
Q ss_pred hhHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy16660 383 AGQYSCLFVYLKLVMGFDEVH-VAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAA 461 (594)
Q Consensus 383 ~~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 461 (594)
-....+...++.+.+|++..+ .|.++..+..+..+..+.+|++.||+|.|+++..+.+..++..+++++.++.+.+.+.
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~ 121 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLM 121 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566777789999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCC
Q psy16660 462 GILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVN 540 (594)
Q Consensus 462 ~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 540 (594)
-+++|++ +..+ ....++...+|+++|+++.|..+....+|.++++++.+. ...+|+.
T Consensus 122 R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr-------------------- 179 (511)
T TIGR00806 122 EVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWI-------------------- 179 (511)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCch--------------------
Confidence 9999999 7777 999999999999999999999999999999999999999 4455544
Q ss_pred CCCCcCCChhHHHHHHHHHHHHHHHHhccCccc
Q psy16660 541 SYPSVIPGPPFVFGALLVIAALLVATFIPESIV 573 (594)
Q Consensus 541 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 573 (594)
.+....++......+++++.+++|..++
T Consensus 180 -----~y~~Ln~Isl~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 180 -----SYSTLNIISLVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 2345566777777888888888885544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=127.78 Aligned_cols=141 Identities=16% Similarity=0.289 Sum_probs=120.3
Q ss_pred HHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy16660 378 SYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWM 457 (594)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~ 457 (594)
.+..........| ++++.+|++..+.|++.+...++..++.++.|++.||+|+|+.+..+.++.+++.+++.+.++.+.
T Consensus 7 ~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (379)
T TIGR00881 7 YYLVRKNFALAMP-YLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWV 85 (379)
T ss_pred HHHhHHhhhhhhH-HHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHH
Confidence 3333444444445 455668999999999999999999999999999999999999999999999999999988889999
Q ss_pred HHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHH-HHHHHHHHhhc
Q psy16660 458 MWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPA-MFGLIFYMFHV 519 (594)
Q Consensus 458 ~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~-~~g~l~~~~g~ 519 (594)
+++..++.|++ +...+...+++.+..|+++|+++.++.+....+|..++|. +.+.+.+..++
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 149 (379)
T TIGR00881 86 MAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSW 149 (379)
T ss_pred HHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCc
Confidence 88888999998 8888999999999999999999999999999999999994 55555554443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.3e-11 Score=129.49 Aligned_cols=145 Identities=12% Similarity=0.074 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHH-hHHHHHHHHHh
Q psy16660 133 FLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISISGVF-AVTFSVVFAYV 209 (594)
Q Consensus 133 ~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i 209 (594)
....|++.++..+...++.+++|+++||+|||+.+..+.++.+++..+ ++.+.+++++.+++.|++ +...+....++
T Consensus 261 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 340 (420)
T PRK09528 261 TRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYI 340 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344599999999999999999999999999999988887777766555 456888888899999987 45556677889
Q ss_pred hcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHh
Q psy16660 210 ADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFA 289 (594)
Q Consensus 210 ~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~ 289 (594)
.+.+|++.|+...+. ..+....
T Consensus 341 ~~~~~~~~~a~~~~~----------------------------------------------------------~~~~~~~ 362 (420)
T PRK09528 341 TLNFDVRLSATIYLV----------------------------------------------------------GFQFAKQ 362 (420)
T ss_pred HHHcCccceeeeeee----------------------------------------------------------hHHHHHH
Confidence 999998888776543 0345677
Q ss_pred hHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCc
Q psy16660 290 ASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLP 335 (594)
Q Consensus 290 ~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~ 335 (594)
+|.++||.++|++.+..||+..|.+.+++.++..++.++.++++++
T Consensus 363 lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~~ 408 (420)
T PRK09528 363 LGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDRE 408 (420)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 9999999999999999999999999888877766665555555443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.7e-11 Score=123.63 Aligned_cols=135 Identities=17% Similarity=0.132 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy16660 385 QYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGIL 464 (594)
Q Consensus 385 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 464 (594)
....+|.+.++ +|.++.+.++..+...++..++.++.|++.||+|||+.+..+.++.+++.+++...++.+.+++..++
T Consensus 10 ~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 88 (377)
T PRK11102 10 YLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFL 88 (377)
T ss_pred HhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 33456666665 79999999999999999999999999999999999999999999999999988888888888888888
Q ss_pred HHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 465 ASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 465 ~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
.|++ +...+...+++.+..|+++|+++.++.+....+|..++|.+.+.+.+..|++
T Consensus 89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 145 (377)
T PRK11102 89 HGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWH 145 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChH
Confidence 8988 7778888999999999999999999999999999999999999999876654
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-10 Score=121.67 Aligned_cols=136 Identities=17% Similarity=0.185 Sum_probs=114.5
Q ss_pred hhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy16660 383 AGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAG 462 (594)
Q Consensus 383 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 462 (594)
.......| ++++.+|++..+.|+..+...++..++.++.|++.||+|||+.+..+.++.+++.+++.+.++.+.+++..
T Consensus 20 ~~~~~~~~-~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (377)
T TIGR00890 20 YTWTLLAP-PLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY 98 (377)
T ss_pred hhhhhHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444 45556899999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 463 ILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 463 ~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
.+.|++ +..++.....+.+..| ++|+++.+.......+|..+++++.+.+.+..|++
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 156 (377)
T TIGR00890 99 GLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVP 156 (377)
T ss_pred HHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHH
Confidence 888888 7677777777777775 67999999999999999988887877777655544
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-10 Score=119.51 Aligned_cols=149 Identities=21% Similarity=0.362 Sum_probs=132.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHh
Q psy16660 371 LCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYG 450 (594)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~ 450 (594)
+....+.............+.+.++ +|.++.+.+...+...++..++.++.|++.||+|||+.+..+..+..++.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~ 82 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA 82 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence 4445555566666667777777766 599999999999999999999999999999999999999999999999999888
Q ss_pred hhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 451 FGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 451 ~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
..++.+..++..++.|++ +...+...++..|..|+++|+++.+..+....+|..++|.+.+.+.+..+++
T Consensus 83 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 153 (352)
T cd06174 83 FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWR 153 (352)
T ss_pred HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 888888888899999998 8888999999999999999999999999999999999999999999876654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-10 Score=120.77 Aligned_cols=135 Identities=15% Similarity=0.115 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy16660 385 QYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGIL 464 (594)
Q Consensus 385 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 464 (594)
....+|.+. +.+|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..++.++....++.+.+++..++
T Consensus 27 ~~p~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 105 (394)
T PRK11652 27 YVPAIADMA-RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAI 105 (394)
T ss_pred HhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 333455555 4479999999999999999999999999999999999999999999988888888888888888888888
Q ss_pred HHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 465 ASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 465 ~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
.|++ +...+....+..+..++++++.+.+..+....++..++|.+.+.+.+..|++
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~ 162 (394)
T PRK11652 106 QGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWR 162 (394)
T ss_pred HHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChH
Confidence 8888 6667777788888898899999999999999999999999999998776654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-10 Score=120.58 Aligned_cols=135 Identities=11% Similarity=0.081 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy16660 385 QYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGIL 464 (594)
Q Consensus 385 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 464 (594)
....++.+. +.+|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..++.++....++.+.+++..++
T Consensus 32 ~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 110 (406)
T PRK15402 32 IQPGMLAVV-EDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFL 110 (406)
T ss_pred HhcchHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 333444444 5589999999999999999999999999999999999999999999988888888888888888888888
Q ss_pred HHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 465 ASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 465 ~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
.|++ +...+...+.+.|.+|+++++++.++......++..++|.+.+.+.+..+++
T Consensus 111 ~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~ 167 (406)
T PRK15402 111 QGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWR 167 (406)
T ss_pred HHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 8888 6677888889999999999999999998888899999999999998876654
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.8e-10 Score=119.43 Aligned_cols=148 Identities=8% Similarity=0.031 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q psy16660 368 ILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLM 447 (594)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~ 447 (594)
+..++...++..+.........|.+ ++.+|.+..+.|++.+...++.+++++..|++.||+|+|+.+..+.++.+++.+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~ 83 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAF 83 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 4445555555555544444455544 677899999999999999999999999999999999999999999999999887
Q ss_pred HHhh---hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16660 448 WYGF---GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYM 516 (594)
Q Consensus 448 ~~~~---~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~ 516 (594)
++.. .++.+.+.+..++.|++ +...+..+.++.+..|++++++..++.+...++|..++|.+.+.+...
T Consensus 84 l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~ 156 (410)
T TIGR00885 84 LFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS 156 (410)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7644 34677778888889999 888899999999999999999999999999999999999999988743
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.27 E-value=3e-08 Score=105.34 Aligned_cols=360 Identities=12% Similarity=0.137 Sum_probs=211.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHh----
Q psy16660 99 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT---- 174 (594)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~---- 174 (594)
.+.++..-++...+.-+ ..-..+.+..+....+-...+...-.-.+...++++..|.+.||..|+++...+.+.-
T Consensus 4 ~~~Ly~sh~ls~w~dR~-w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv 82 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRM-WEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSV 82 (432)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHH
Confidence 35566777777777666 6666777776664433333355555566777888999999999999999877665432
Q ss_pred hhhhhh----hcc------hHHHHHHHHHHHHHHhHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHH
Q psy16660 175 CLPIPL----MTL------DTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAM 244 (594)
Q Consensus 175 ~i~~~~----~~~------~~~~l~~~r~l~Gi~~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 244 (594)
++++.+ +.. +.+.......+.-+.+. ..-..+....+.-+++. ...+
T Consensus 83 ~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~-i~~Las~~~~iavERDW--Vvvi-------------------- 139 (432)
T PF06963_consen 83 AASCALFLLLLSYPSSSSQSSWLFIALFALLILLGA-IERLASIANTIAVERDW--VVVI-------------------- 139 (432)
T ss_pred HHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHH-HHHHHHhhhhheeccch--hhhh--------------------
Confidence 222111 111 11222222211111111 00011111111111111 1111
Q ss_pred hhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q psy16660 245 ISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVF 324 (594)
Q Consensus 245 ~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~ 324 (594)
+ -.+++.+++..+. +.-.--+.-+++|++.|.+....+.+....+.++..+++..
T Consensus 140 ------------------~-~~~~~~La~~NA~------mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~ 194 (432)
T PF06963_consen 140 ------------------A-GGDPGALARMNAT------MRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVF 194 (432)
T ss_pred ------------------c-CCChhhHHHHHHH------HHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH
Confidence 0 0123334444444 66666778999999999999988999888888888887766
Q ss_pred Hhheec-------cCCCchhhccCCCCCCCCc-----ccc-----------CCchhhHhhhccchhHHHHHHHHHHHHHh
Q psy16660 325 FILVAV-------PESLPEKVRQASWGGAPIS-----WEQ-----------ADPFASLRKVGKDQTILMLCVTVFLSYLP 381 (594)
Q Consensus 325 ~~~~~l-------~e~~~~~~~~~~~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (594)
+=++++ |+-..++.++.+......+ ... .+...+++..++++.+..-....+++ +.
T Consensus 195 vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY-~T 273 (432)
T PF06963_consen 195 VEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLY-FT 273 (432)
T ss_pred HHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHH-HH
Confidence 544332 2111111111000000000 000 01123345556666666555555544 44
Q ss_pred hhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHh----hh--h--
Q psy16660 382 EAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYG----FG--S-- 453 (594)
Q Consensus 382 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~----~~--~-- 453 (594)
..++...+..|+... |+++...|.+-+...+..+.+.++.+++.+|+|..+.-..++.....++.+.. .. +
T Consensus 274 VLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~ 352 (432)
T PF06963_consen 274 VLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFS 352 (432)
T ss_pred HhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 556777888899886 99999999999999999999999999999999998877777665444333222 11 1
Q ss_pred --hHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHH
Q psy16660 454 --QMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAM 509 (594)
Q Consensus 454 --~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~ 509 (594)
+...+..+.++-=+| =.+--..+-+++|.+|+++||+..|+-+...++...+.-.+
T Consensus 353 ~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 353 SISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 122233333333344 23445677888999999999999999999999888765443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.2e-10 Score=120.69 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=128.6
Q ss_pred HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hch
Q psy16660 393 LKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SIT 471 (594)
Q Consensus 393 ~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~ 471 (594)
..+.+|.+..+.+...+.+.++..++.++.|++.||+|||+++..+..+.+++.++....++.+.++++-++.|++ +..
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~ 121 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFI 121 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999999999999999999999998888888998888888888988 555
Q ss_pred HhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhH
Q psy16660 472 YPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPF 551 (594)
Q Consensus 472 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 551 (594)
.+.....+.|.+|++++++++++.+....++..++|.+++.+.+..|++ ..|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~----------------------------~~f 173 (413)
T PRK15403 122 ATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWK----------------------------VLF 173 (413)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH----------------------------HHH
Confidence 5666788889999999999999999999999999999999998876665 677
Q ss_pred HHHHHHHHHHHHHH-HhccCcc
Q psy16660 552 VFGALLVIAALLVA-TFIPESI 572 (594)
Q Consensus 552 ~~~~~~~~~~~~~~-~~~~~~~ 572 (594)
++.+++.+++.+.. +..|+++
T Consensus 174 ~~~~~~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 174 AIIAVMGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHHHHHHHHHhCCCCc
Confidence 77766666555443 3456543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.9e-10 Score=122.76 Aligned_cols=181 Identities=14% Similarity=0.191 Sum_probs=150.7
Q ss_pred hccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q psy16660 362 VGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVF 441 (594)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~ 441 (594)
.+|||.+..+.+...+..++........+-++.+ ..-|+...+++.....+-.++.++++|.+.||++||++++.+-++
T Consensus 6 plr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~-lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~ 84 (524)
T PF05977_consen 6 PLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQ-LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLL 84 (524)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 3589999999999988888877776666666655 466899999999999999999999999999999999999988776
Q ss_pred HHHHHHHHhh-----hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16660 442 EMLQLMWYGF-----GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFY 515 (594)
Q Consensus 442 ~~i~~~~~~~-----~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~ 515 (594)
.++..+.+.. ..+.|.+++..++.|++ .+..|..++++.+.+|+++...+.++.+...++...+||.++|.++.
T Consensus 85 ~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva 164 (524)
T PF05977_consen 85 RALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA 164 (524)
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 6554433332 24678888888899998 88899999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhccCc
Q psy16660 516 MFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIPES 571 (594)
Q Consensus 516 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 571 (594)
..|.. ..|.+.++..++.+......++.
T Consensus 165 ~~G~~----------------------------~~f~inalsfl~~i~~l~~~~~~ 192 (524)
T PF05977_consen 165 FFGAA----------------------------AAFLINALSFLISILALLRWKPP 192 (524)
T ss_pred HHHHH----------------------------HHHHHHHHHHHHHHHHHHHcccc
Confidence 88755 78888888777776666555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.1e-10 Score=122.70 Aligned_cols=154 Identities=15% Similarity=0.188 Sum_probs=117.0
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q psy16660 365 DQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEML 444 (594)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i 444 (594)
++.++...+.....+..........| ++++ .|.++.+.++..+...++..++.++.|++.||+|+|+.+..+.++.++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 103 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMP-YLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhH-HHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence 33444444444443333333333444 5555 499999999999999999999999999999999999999999888888
Q ss_pred HHHHHhhh----hhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHH-hh
Q psy16660 445 QLMWYGFG----SQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYM-FH 518 (594)
Q Consensus 445 ~~~~~~~~----~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~-~g 518 (594)
+.+++... .+.+.+++..++.|++ +..++.....+.+.+|+++||+++|+.+...++++.+++.+.+...+. .|
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 183 (438)
T TIGR00712 104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND 183 (438)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Confidence 87776553 3455556666777877 777788888889999999999999999999999999999888765543 34
Q ss_pred cc
Q psy16660 519 VD 520 (594)
Q Consensus 519 ~~ 520 (594)
++
T Consensus 184 w~ 185 (438)
T TIGR00712 184 WH 185 (438)
T ss_pred hH
Confidence 43
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.6e-10 Score=118.25 Aligned_cols=149 Identities=11% Similarity=0.208 Sum_probs=121.1
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q psy16660 366 QTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQ 445 (594)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~ 445 (594)
|.++...+...+.+..........+.+-+..+|++..|.+++.++..++..+.++..|++.||+|.|+++.++.++..+.
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~ 113 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP 113 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 55666666655555555555444555555469999999999999999999999999999999999999999999998888
Q ss_pred HHHHhhh-----hhHHHHHHHHHHHHHhhchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16660 446 LMWYGFG-----SQMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIF 514 (594)
Q Consensus 446 ~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~ 514 (594)
.+.+++. ++.+.+++..++.|+++..++.....+++.+|+++||++.|+....+++|..+++.+...+.
T Consensus 114 ~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i 187 (462)
T PRK15034 114 CVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI 187 (462)
T ss_pred HHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888765 68888888889999987788889999999999999999999998777788777666655433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.9e-10 Score=118.20 Aligned_cols=132 Identities=12% Similarity=-0.037 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy16660 387 SCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILAS 466 (594)
Q Consensus 387 ~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g 466 (594)
..+|.+. +.+|+++.+.|++.+.+.++.+++++..|++.||+|||+++.........+.......++.+.+++.-++.|
T Consensus 12 ~~lp~i~-~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G 90 (368)
T TIGR00903 12 PVLSLVA-EDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAA 90 (368)
T ss_pred hhHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445554 458999999999999999999999999999999999888776555555444433333367888888888899
Q ss_pred Hh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 467 LA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 467 ~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
++ +. .+.....+++..|+++|+++.++.+....+|..+++.+.+.+.+..|++
T Consensus 91 ~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr 144 (368)
T TIGR00903 91 LGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQ 144 (368)
T ss_pred hHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 88 54 4555666689999999999999999999999999999999998877665
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.2e-10 Score=118.59 Aligned_cols=131 Identities=14% Similarity=0.129 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy16660 385 QYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGIL 464 (594)
Q Consensus 385 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 464 (594)
....+|.. ++.+|++..+.|+..+...++..++.++.|++.||+|+|+++..+..+.+++.++.++.++.+.+++.-++
T Consensus 28 ~~~~lp~i-~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l 106 (393)
T PRK09705 28 VGPLLPQL-RQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALL 106 (393)
T ss_pred cchhHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHH
Confidence 33444544 45689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy16660 465 ASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMF 517 (594)
Q Consensus 465 ~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~ 517 (594)
.|++ +...+....++.+..| ++|+.++|.......+|..+++.+.+.+.++.
T Consensus 107 ~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~ 159 (393)
T PRK09705 107 GGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS 159 (393)
T ss_pred HHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999 7778888888888886 78999999999999999999999999888764
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.5e-10 Score=120.31 Aligned_cols=152 Identities=12% Similarity=0.171 Sum_probs=122.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHH
Q psy16660 388 CLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAG-ILAS 466 (594)
Q Consensus 388 ~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~-~l~g 466 (594)
+.+.+. +.+|++..+.++..+...++..++.++.|++.||+|+|+.++.+.++..++.++.++.++.+.++... ++.|
T Consensus 41 ~~~~i~-~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G 119 (455)
T TIGR00892 41 FFKELQ-QIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITG 119 (455)
T ss_pred hHHHHH-HHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444 45799999999999998888889999999999999999999999988888888888888877766543 5667
Q ss_pred Hh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCc
Q psy16660 467 LA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSV 545 (594)
Q Consensus 467 ~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (594)
++ +...+...+++.+.++ ++|+++.|+.+....+|..++|.+.+.+.+..|++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr------------------------- 173 (455)
T TIGR00892 120 LGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWR------------------------- 173 (455)
T ss_pred hcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChH-------------------------
Confidence 77 5555666677778775 78999999999999999999999999999987765
Q ss_pred CCChhHHHHHHHHHHHHHHHHhcc
Q psy16660 546 IPGPPFVFGALLVIAALLVATFIP 569 (594)
Q Consensus 546 ~~~~~f~~~~~~~~~~~~~~~~~~ 569 (594)
..|.+.+++.+++.+..++.+
T Consensus 174 ---~~f~~~~~~~~~~~v~~~~~~ 194 (455)
T TIGR00892 174 ---GSFLILGGLLLHCCVCGALMR 194 (455)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhC
Confidence 778777766665554444443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-10 Score=121.32 Aligned_cols=168 Identities=14% Similarity=0.086 Sum_probs=136.4
Q ss_pred cCCchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHh
Q psy16660 95 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 174 (594)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~ 174 (594)
+++.++...+..++...+... .....|.+.++.+.++... |++.++..++..+..++.|++.||+|+|+.+.++.+..
T Consensus 203 ~~~~~~~~l~~~~l~~~~~~~-~~~~~~~~l~~~g~s~~~~-g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~ 280 (382)
T TIGR00902 203 KNPMNLRFLAAVCLIQGAHAA-YYGFSAIYWQAAGISASAT-GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIAC 280 (382)
T ss_pred cChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCHhHH-HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHH
Confidence 455566666666666666555 5668888888877766555 99999999999999999999999999999999998888
Q ss_pred hhhhhh--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhcccc
Q psy16660 175 CLPIPL--MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVF 251 (594)
Q Consensus 175 ~i~~~~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 251 (594)
.+...+ ++.+.+++++.++++|+. +...+....++.+. |+++|++..++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~--------------------------- 332 (382)
T TIGR00902 281 VGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQAL--------------------------- 332 (382)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHH---------------------------
Confidence 887666 456889999999999997 77788888899988 88888888887
Q ss_pred chhhhhhhhhhccchhhhhhhhhhcccccccchh-HHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Q psy16660 252 AVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVS-ATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFF 325 (594)
Q Consensus 252 ~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~-~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~ 325 (594)
++ ...++|.++||.++|++.+++|+ ..|++.+++.+++.++
T Consensus 333 --------------------------------~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 333 --------------------------------YNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 65 46789999999999999999986 6677777777765444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=6e-10 Score=118.69 Aligned_cols=149 Identities=17% Similarity=0.256 Sum_probs=114.5
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q psy16660 365 DQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEML 444 (594)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i 444 (594)
||.+|.+....++.+........++|.|+.+.+|.++.+.|+..+...++..+++++.|+++||+|||+.+..+....++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~ 80 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLV 80 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 57888898889998888888889999999998999999999999999999999999999999999999998877665544
Q ss_pred HHHHH---hhhh-----hHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16660 445 QLMWY---GFGS-----QMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFY 515 (594)
Q Consensus 445 ~~~~~---~~~~-----~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~ 515 (594)
+.... ...+ ..+...+..++.+++ +...+....+..+..+ +++...|......++|..++|.++|.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~ 158 (396)
T TIGR00882 81 LFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS 158 (396)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc
Confidence 33322 1111 122233344555666 5666777777766542 34567788888889999999999988765
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-10 Score=124.35 Aligned_cols=161 Identities=17% Similarity=0.184 Sum_probs=113.9
Q ss_pred hhhHHHHHHh-hCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhh-hhh--h--hcchHHHHHH
Q psy16660 117 TMPIISVLNR-TFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL-PIP--L--MTLDTWWFFA 190 (594)
Q Consensus 117 ~~~~~~~~~~-~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i-~~~--~--~~~~~~~l~~ 190 (594)
....+|.+.+ +++.+... .++......++..++.++.|+++||+|||+++..+.++..+ +.. . .+.+...+++
T Consensus 269 ~~~~~p~~l~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (490)
T PRK10642 269 LLTYMPSYLSHNLHYSEDH-GVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFA 347 (490)
T ss_pred HHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4556777764 44555443 37777888899999999999999999999988877654332 221 1 2335677788
Q ss_pred HHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhh
Q psy16660 191 MISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEH 269 (594)
Q Consensus 191 ~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~ 269 (594)
++++.|++ +........++.+.+|++.|++++|+
T Consensus 348 ~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~--------------------------------------------- 382 (490)
T PRK10642 348 GLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAA--------------------------------------------- 382 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHH---------------------------------------------
Confidence 89988886 44556667888899999999998886
Q ss_pred hhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhheeccCCCchhh
Q psy16660 270 ERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTY-SLSLVVAVATAVAILDVFFILVAVPESLPEKV 338 (594)
Q Consensus 270 ~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~-gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~ 338 (594)
......++..++|.+.+++.+.. +|+.++++..+.+++.++..+ ++||+++...
T Consensus 383 --------------~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~pes~~~~~ 437 (490)
T PRK10642 383 --------------AFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV-TMKETANRPL 437 (490)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-HhccccCCCC
Confidence 33334455677888888887654 478777776666666555544 4799876543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-09 Score=114.66 Aligned_cols=155 Identities=17% Similarity=0.281 Sum_probs=114.4
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH-HHHHHHHHHHHhhchHHHHH-HHHHHH
Q psy16660 365 DQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSV-SAQIILGCLMNVLGAKHTII-IGLVFE 442 (594)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~-~~~~~~g~l~dr~g~~~~l~-~~~~~~ 442 (594)
|.+.+.+.+..++..+........++.|+++.+|.++.+.|+..+...+... .+.+.+++ .||+|+|+.++ .+.++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~ 92 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLG 92 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHH
Confidence 5566666677788888877788899999998899999999999876655444 55555566 99999988754 555555
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHH-HHhhchHhHHHHHHhhcCCCccc--hHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Q psy16660 443 MLQLMWYGFGSQMWMMWAAGILA-SLASITYPAISALVSMHSDADRQ--GLVQGMVTGMRGLCNGLGPAMFGLIFYMFHV 519 (594)
Q Consensus 443 ~i~~~~~~~~~~~~~~~~~~~l~-g~~~~~~~~~~~~~~~~~p~~~~--g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~ 519 (594)
.++..++.+.++.+.+.+...+. +.+....|....+..+..+++.| +...+..+...++|..++|++++.+.+..|+
T Consensus 93 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw 172 (393)
T PRK15011 93 VLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSF 172 (393)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCh
Confidence 56666667777777655443333 33455677777887776665544 3455788888999999999999999998776
Q ss_pred c
Q psy16660 520 D 520 (594)
Q Consensus 520 ~ 520 (594)
+
T Consensus 173 ~ 173 (393)
T PRK15011 173 T 173 (393)
T ss_pred H
Confidence 6
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.9e-10 Score=123.95 Aligned_cols=131 Identities=10% Similarity=0.039 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhh-----hhhHHHHH
Q psy16660 385 QYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGF-----GSQMWMMW 459 (594)
Q Consensus 385 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~-----~~~~~~~~ 459 (594)
.....|. +.+.+|++..+.|++.+.+.++..++.++.|++.||+|+|+++..+.++.+++.+.++. .++.+.++
T Consensus 48 ~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 126 (467)
T PRK09556 48 FKAAQND-MISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMI 126 (467)
T ss_pred hhhhhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 3334454 44568999999999999999999999999999999999999998888777766655554 46788888
Q ss_pred HHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16660 460 AAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYM 516 (594)
Q Consensus 460 ~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~ 516 (594)
+..++.|++ +...|...+++.+.+|+++||+++|+.....++|.++++.+...+.+.
T Consensus 127 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~ 184 (467)
T PRK09556 127 ALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY 184 (467)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence 888889998 788899999999999999999999999999999999999988777654
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-09 Score=114.67 Aligned_cols=146 Identities=12% Similarity=0.094 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q psy16660 368 ILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLM 447 (594)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~ 447 (594)
+..+.+..++..+.........|.+ ++.+|.++.+.|+..+.+.++..++.++.|++.||+|+|+++..+.++.+++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~ 106 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA 106 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 4445555555566655666666665 777899999999999999999999999999999999999999999999999887
Q ss_pred HH---hhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16660 448 WY---GFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIF 514 (594)
Q Consensus 448 ~~---~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~ 514 (594)
++ ...++.+.+.+..++.|++ +...+..+.++.+..|+++++..++..+....+|..+++.+++.+.
T Consensus 107 l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75 3467888888899999999 8888999999888776666667899999999999999999988765
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.4e-11 Score=122.36 Aligned_cols=377 Identities=16% Similarity=0.144 Sum_probs=205.6
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcc----cCchhhHHHH-H
Q psy16660 97 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL----WGRKLFLLIT-V 171 (594)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr----~Grr~~l~~~-~ 171 (594)
+....+..+.+..-++|.. .....++|.++++...... +.+-.+..+...+.+|+.|..+|| |||||.++.. .
T Consensus 32 ~~li~v~~ia~Gvqf~wA~-elsy~tPyl~~lGvphk~~-S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s 109 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWAL-ELSYLTPYLQSLGVPHKWS-SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGS 109 (498)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhccccHHHHHcCCCcccc-cccccccccccceecccccccccccccccccccchHHHhh
Confidence 4445555566666677777 7778888888998887766 888888899999999999999996 8998886654 4
Q ss_pred HHhhhhhhh--hcchHHHHHHHHHHHHHHhHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhcc
Q psy16660 172 FVTCLPIPL--MTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISG 249 (594)
Q Consensus 172 ~~~~i~~~~--~~~~~~~l~~~r~l~Gi~~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 249 (594)
+..+++.++ ++.++..++ ..+--+ ..+.++.. +...-.|++=+.+
T Consensus 110 ~~i~~~l~Lig~aaDig~~l-------------------gd~~~~-~~~~rai~---------~~~lg~~LLD~A~---- 156 (498)
T KOG0637|consen 110 LLIAVSLFLIGYAADIGLLL-------------------GDNERK-PVKPRAIV---------LFILGFWLLDVAN---- 156 (498)
T ss_pred HHHHHHHhhhhhHhhhhHHh-------------------cCCccc-ccchHHHH---------HHHHHhHHHHhhh----
Confidence 444444433 222222211 111111 12223222 2333334333333
Q ss_pred ccchhhhhhhhhhccchhhhhhhh-hhcccccccchhHHHhhHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHh
Q psy16660 250 VFAVTFSVVFAYVADVTEEHERSL-AYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLS--LVVAVATAVAILDVFFI 326 (594)
Q Consensus 250 ~~~~~~~~~~a~i~d~t~~~~r~~-~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~--~~f~~~~~~~ll~~~~~ 326 (594)
.+.-..|+|+++|+..++++.+ +.+. +....++|..+|..+++++ +|+ .+|.......+.+..+-
T Consensus 157 --n~~qgp~ra~L~Dl~~~d~~~~~Ans~------f~~f~avGnvLGY~~g~y~----~~~~~~~Ft~~~~~~~~C~~~~ 224 (498)
T KOG0637|consen 157 --NTLQGPCRALLADLARGDAKKTRANSV------FSFFMAVGNVLGYALGSYL----GLYKIFPFTLTTACDLYCANLK 224 (498)
T ss_pred --hhhhhhHHHHHHHhccChhhhhccchh------HHHHHHhcceeeeeccccc----CceEEeehHHHHHHHHHHHHHH
Confidence 3667899999999997655554 8888 8999999999999888753 322 12222211111111110
Q ss_pred h-------eeccCCCc----hhhccCCCC--CCCCccccCCchhh-Hhhh-ccchhHHHHHHHHHHHHHhhhhHHHHHHH
Q psy16660 327 L-------VAVPESLP----EKVRQASWG--GAPISWEQADPFAS-LRKV-GKDQTILMLCVTVFLSYLPEAGQYSCLFV 391 (594)
Q Consensus 327 ~-------~~l~e~~~----~~~~~~~~~--~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (594)
. +..+++.. .++++...+ ..+.+..+...... ...+ ...|..+.+++...+.+++.....-+..-
T Consensus 225 ~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~e~fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TD 304 (498)
T KOG0637|consen 225 LCFFLEVTLLLIETSESLWYPQEKPLSPKGTTARSKSSKLPFLLEIFGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTD 304 (498)
T ss_pred HHHHHhhhhhheecccccccccccCCCCCcccccccccCcchHHHHhchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11111100 000110000 00010000000111 1111 24567888888888888877666555554
Q ss_pred HHH-HHhCCChhH---------------H-HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhh
Q psy16660 392 YLK-LVMGFDEVH---------------V-AVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQ 454 (594)
Q Consensus 392 ~~~-~~~g~s~~~---------------~-g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~ 454 (594)
++- ++|+.++.. . .+=+.++++...+.+....++.+|+|.|+.+..+.....++..+....++
T Consensus 305 fmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~ 384 (498)
T KOG0637|consen 305 FMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLN 384 (498)
T ss_pred hcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhh
Confidence 443 345544321 1 13345566666688888999999999666555555434444333333333
Q ss_pred HHHHHHHHHHHHHh----------------------hchHhHHHHHHhhcCC--CccchHHHHHHHHHHHHHHhHHHHHH
Q psy16660 455 MWMMWAAGILASLA----------------------SITYPAISALVSMHSD--ADRQGLVQGMVTGMRGLCNGLGPAMF 510 (594)
Q Consensus 455 ~~~~~~~~~l~g~~----------------------~~~~~~~~~~~~~~~p--~~~~g~~~g~~~~~~~lg~~lg~~~~ 510 (594)
.+....-....|+- .+.+...++..+.... ...+|.-.|+.+....+.+.+.....
T Consensus 385 ~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~ 464 (498)
T KOG0637|consen 385 TYVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGL 464 (498)
T ss_pred HHHHHHHHhhcceeecchhcccHHHHHHHHHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccc
Confidence 22222222222211 1111122222211111 12347778888888999999999999
Q ss_pred HHHHHHhhcc
Q psy16660 511 GLIFYMFHVD 520 (594)
Q Consensus 511 g~l~~~~g~~ 520 (594)
|.+.+..|..
T Consensus 465 Gp~~~~~G~~ 474 (498)
T KOG0637|consen 465 GPLDQLFGGG 474 (498)
T ss_pred cchhhhcCCc
Confidence 9999988754
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-09 Score=115.89 Aligned_cols=118 Identities=15% Similarity=0.263 Sum_probs=99.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHH
Q psy16660 391 VYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGS----QMWMMWAAGILAS 466 (594)
Q Consensus 391 ~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~g 466 (594)
.++.+. |++..+.|+..+...++..+++++.|++.||+|+|++++.+.++.+++.+++.+.+ +.+.+++..++.|
T Consensus 53 p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (452)
T PRK11273 53 PYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCG 131 (452)
T ss_pred HHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHH
Confidence 355666 99999999999999999999999999999999999999999998888887776642 5566667777788
Q ss_pred Hh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHH
Q psy16660 467 LA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAM 509 (594)
Q Consensus 467 ~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~ 509 (594)
++ +..++.....+.+.+|+++|++++|+.+....+|+.+.+++
T Consensus 132 i~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l 175 (452)
T PRK11273 132 WFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLL 175 (452)
T ss_pred HHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 87 77777777788889999999999999999999887554444
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-10 Score=115.90 Aligned_cols=149 Identities=18% Similarity=0.325 Sum_probs=135.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHH
Q psy16660 398 GFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAIS 476 (594)
Q Consensus 398 g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~ 476 (594)
+-+..++|++++...+..++.+++.|.+.||+|+|..+++|+.++..+.+++++..+.+.++++-.+.|+| .+......
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgl 181 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGL 181 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhH
Confidence 44667899999999999999999999999999999999999999999999999999999999999999999 88889999
Q ss_pred HHHhhcCCCcc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHH
Q psy16660 477 ALVSMHSDADR-QGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGA 555 (594)
Q Consensus 477 ~~~~~~~p~~~-~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 555 (594)
+++++.+|++. ||+++|..-....+|..+||+++|.+||..|+. .+|.+.+
T Consensus 182 amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~----------------------------aPFlVL~ 233 (464)
T KOG3764|consen 182 AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKS----------------------------APFLVLA 233 (464)
T ss_pred HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCc----------------------------CcHHHHH
Confidence 99999998874 799999999999999999999999999998876 8999998
Q ss_pred HHHHHHHHHHHhccCcccc
Q psy16660 556 LLVIAALLVATFIPESIVT 574 (594)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~ 574 (594)
+++++...+.+++-+..+.
T Consensus 234 ~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 234 IVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred HHHHHHHHHHHheeCcccc
Confidence 8888877777766555333
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.7e-10 Score=99.74 Aligned_cols=112 Identities=19% Similarity=0.269 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCcc
Q psy16660 409 AVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADR 487 (594)
Q Consensus 409 ~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~ 487 (594)
....++.+++.++.+++.||+|+|+.+..+..+..++.+.+...++.+......++.|++ +...+...+++.|..|+++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE 84 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence 345677889999999999999999999999888888888887778888888888888888 7788899999999999999
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 488 QGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 488 ~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
|+++.++.+....++..++|.+.+.+.+..+++
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 117 (141)
T TIGR00880 85 RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWR 117 (141)
T ss_pred hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchH
Confidence 999999999999999999999999998765543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.6e-10 Score=120.86 Aligned_cols=144 Identities=12% Similarity=0.103 Sum_probs=117.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHh-hchHhHH
Q psy16660 400 DEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFG---SQMWMMWAAGILASLA-SITYPAI 475 (594)
Q Consensus 400 s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~---~~~~~~~~~~~l~g~~-~~~~~~~ 475 (594)
+..+.+++.+...++..++.++.|++.||+|||+.+..+.++..++.++.... .+.+.+++..++.|++ +...+..
T Consensus 69 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 148 (481)
T TIGR00879 69 SSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALV 148 (481)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHH
Confidence 37899999999999999999999999999999999999998888887777543 3345777888889998 7888889
Q ss_pred HHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHH---HHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHH
Q psy16660 476 SALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMF---GLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFV 552 (594)
Q Consensus 476 ~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~---g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 552 (594)
..++.|..|+++|+++.++.+....+|..+++.+. +...+. .+++..|.
T Consensus 149 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~----------------------------~~w~~~f~ 200 (481)
T TIGR00879 149 PMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNT----------------------------LGWRIPLG 200 (481)
T ss_pred HHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCC----------------------------ccHHHHHH
Confidence 99999999999999999999999999999999988 322222 23446777
Q ss_pred HHHHHHHHHHHHHHhccCc
Q psy16660 553 FGALLVIAALLVATFIPES 571 (594)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~ 571 (594)
+.++..++.++..+++++.
T Consensus 201 ~~~~~~~~~~~~~~~l~~~ 219 (481)
T TIGR00879 201 LQLIPAGLLFLGLFFLPES 219 (481)
T ss_pred HHHHHHHHHHHHHhcCCCC
Confidence 7666666666656666654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-09 Score=117.49 Aligned_cols=155 Identities=10% Similarity=-0.007 Sum_probs=120.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHH
Q psy16660 398 GFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFG------------SQMWMMWAAGILA 465 (594)
Q Consensus 398 g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~l~ 465 (594)
+.+..+.++..+...++.+++.++.|++.||+|||+++..+.++.+++.+...+. +..+.+++.-++.
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~ 130 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIG 130 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHH
Confidence 7888999999999999999999999999999999999999988888777665542 1234556677888
Q ss_pred HHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCC
Q psy16660 466 SLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPS 544 (594)
Q Consensus 466 g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (594)
|++ +...+...++++|.+|+++||+++++.+....+|..+++.+.+.+....+.. ....
T Consensus 131 G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~--------------------~~~~ 190 (479)
T PRK10077 131 GIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDAS--------------------WLNT 190 (479)
T ss_pred hhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCccc--------------------cccc
Confidence 998 8889999999999999999999999999999999998877666554311000 0012
Q ss_pred cCCChhHHHHHHHHHHHHHHHHhccCcc
Q psy16660 545 VIPGPPFVFGALLVIAALLVATFIPESI 572 (594)
Q Consensus 545 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 572 (594)
.+++..|.+.++..++..+..+++++++
T Consensus 191 ~gWr~~f~~~~~~~~~~~~~~~~l~~s~ 218 (479)
T PRK10077 191 DGWRYMFASEAIPALLFLMLLYFVPETP 218 (479)
T ss_pred CChHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 3456778777766666666666677654
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.8e-09 Score=114.88 Aligned_cols=169 Identities=18% Similarity=0.184 Sum_probs=124.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHHh-hch
Q psy16660 399 FDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQ------MWMMWAAGILASLA-SIT 471 (594)
Q Consensus 399 ~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~l~g~~-~~~ 471 (594)
.+..+.+++.+...++.+++.++.|++.||+|||+.+..+.++..++.++....++ .+.++++.++.|++ +..
T Consensus 53 ~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~ 132 (502)
T TIGR00887 53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGD 132 (502)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhh
Confidence 34556789999999999999999999999999999999998888888877766543 56778888899999 888
Q ss_pred HhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhH
Q psy16660 472 YPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPF 551 (594)
Q Consensus 472 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 551 (594)
.+....+++|.+|+++||++.++.+....+|..+++.+...+.......... ++..+++.--......++++..|
T Consensus 133 ~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~WR~~~ 207 (502)
T TIGR00887 133 YPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEA-----AADEASCTGSCVPAVDYMWRILI 207 (502)
T ss_pred hHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----ccccccccccccchhcccHHHHH
Confidence 9999999999999999999999999999999999999988776533210000 00000000000001123566777
Q ss_pred HHHHHHHHHHHHHHHhccCcc
Q psy16660 552 VFGALLVIAALLVATFIPESI 572 (594)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~ 572 (594)
.+.++..++.++..+++||.+
T Consensus 208 ~~~~ip~~i~~~~~~~lpESp 228 (502)
T TIGR00887 208 GFGAVPALLALYFRLTIPETP 228 (502)
T ss_pred HHHHHHHHHHHHHHHhCCCCH
Confidence 777766666666667778763
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.5e-09 Score=112.18 Aligned_cols=129 Identities=12% Similarity=0.083 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhC---CChhHH---HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhH----
Q psy16660 386 YSCLFVYLKLVMG---FDEVHV---AVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQM---- 455 (594)
Q Consensus 386 ~~~~~~~~~~~~g---~s~~~~---g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~---- 455 (594)
..+...++.++++ .+..+. +..++...++..+++++.|++.||+|||+.+..+.++.+++.++.++.++.
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (432)
T PRK10406 41 YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIG 120 (432)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHH
Confidence 4444455666663 444433 344455556666999999999999999999999999999998888776543
Q ss_pred ----HHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16660 456 ----WMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIF 514 (594)
Q Consensus 456 ----~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~ 514 (594)
..+++.-++.|++ +..++...+++.|..|+++||++.++.......|..+++.+...+.
T Consensus 121 ~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 184 (432)
T PRK10406 121 TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ 184 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677788998 8889999999999999999999999988888888888877665554
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.2e-09 Score=127.51 Aligned_cols=160 Identities=15% Similarity=0.037 Sum_probs=117.0
Q ss_pred hhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCC-----hhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q psy16660 361 KVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFD-----EVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTI 435 (594)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s-----~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l 435 (594)
.+++++.++.+....++..+........+..+....+..+ ....++..+.+.+..++.++++|+++||+++|+++
T Consensus 6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~ 85 (1140)
T PRK06814 6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA 85 (1140)
T ss_pred hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence 3557777777777776666654433333232222112111 24567788888899999999999999999999875
Q ss_pred HHH--HHHHHHHHHHH-hhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHH
Q psy16660 436 IIG--LVFEMLQLMWY-GFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFG 511 (594)
Q Consensus 436 ~~~--~~~~~i~~~~~-~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g 511 (594)
... ..+......++ ...++.|.+++..++.|++ ++..|...+++.+.+|++++++++|+.++..++|.++||.++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g 165 (1140)
T PRK06814 86 KILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGG 165 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 432 21222222222 2347888899999999998 8888999999999999999999999999999999999999999
Q ss_pred HHHHHhhcc
Q psy16660 512 LIFYMFHVD 520 (594)
Q Consensus 512 ~l~~~~g~~ 520 (594)
.+.+..|+.
T Consensus 166 ~l~~~~~~~ 174 (1140)
T PRK06814 166 LATISGNFV 174 (1140)
T ss_pred HHHhccccH
Confidence 999876654
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=115.47 Aligned_cols=161 Identities=19% Similarity=0.198 Sum_probs=115.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHh-hCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhh-
Q psy16660 99 VYHALVVIFLEFFAWGLLTMPIISVLNR-TFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL- 176 (594)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i- 176 (594)
++......++....... ....+|.+.+ +++.++. ..+...+...++..++.++.|+++||+|||+.+.....+..+
T Consensus 221 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 298 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYL-ITTYLPTYLTQTLGLSAN-SALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALL 298 (394)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 34444444444444444 5667788774 4555544 448899999999999999999999999999987654433222
Q ss_pred hhhh---h--cchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccc
Q psy16660 177 PIPL---M--TLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGV 250 (594)
Q Consensus 177 ~~~~---~--~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 250 (594)
+... + ..+.+.+++..++.|++ +...+...+++.|.+|+++|+++.++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-------------------------- 352 (394)
T TIGR00883 299 AVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASL-------------------------- 352 (394)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeee--------------------------
Confidence 2111 2 13566677777888886 56777889999999999999998887
Q ss_pred cchhhhhhhhhhccchhhhhhhhhhcccccccch-hHHHhhHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Q psy16660 251 FAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQV-SATFAASMVFSPALGAYLEKTYS-LSLVVAVATAVAI 320 (594)
Q Consensus 251 ~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~-~~~~~~g~~igp~l~~~l~~~~g-w~~~f~~~~~~~l 320 (594)
. +....+|..++|.+++++.++.| |+..++...+..+
T Consensus 353 ---------------------------------~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 353 ---------------------------------AYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred ---------------------------------hhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 4 34456788899999999999888 8887776664433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-09 Score=111.19 Aligned_cols=151 Identities=17% Similarity=0.296 Sum_probs=125.6
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q psy16660 366 QTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQ 445 (594)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~ 445 (594)
|+++.-.++....+.. ......+-.++++.+|+|+.|.+++.++..+...+.++..|.+.||+|.|+....+.++..+-
T Consensus 14 ~~L~~S~~af~v~F~V-W~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP 92 (417)
T COG2223 14 RNLWLSTLAFDVGFMV-WTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIP 92 (417)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHH
Confidence 3444444444433333 444444555666789999999999999999999999999999999999999999999999888
Q ss_pred HHHHhhhh---hHHHHHHHHHHHHHhhchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy16660 446 LMWYGFGS---QMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 446 ~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g 518 (594)
++.+.+.. +.|.+++..++.|+++..+......+++.+|++++|.++|++. .+|+|..+...+...+....|
T Consensus 93 ~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g 167 (417)
T COG2223 93 CLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG 167 (417)
T ss_pred HHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh
Confidence 88887754 3458888888899998888888889999999999999999998 999999999999999998877
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.3e-10 Score=105.74 Aligned_cols=319 Identities=14% Similarity=0.125 Sum_probs=188.7
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh-hcchHHHHHHHHHHH
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL-MTLDTWWFFAMISIS 195 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~-~~~~~~~l~~~r~l~ 195 (594)
..|.+-.+.++++-...+. |.+.-...-..++...+.|.++||-|||+.-+.-++.+.++++. .++++-.++++|++.
T Consensus 56 QgPYvYyLYstYgFgkG~I-gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTKhSpqYkVLmVGR~LG 134 (454)
T KOG4332|consen 56 QGPYVYYLYSTYGFGKGDI-GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMVGRVLG 134 (454)
T ss_pred cCceeeeeehhcCccCCcc-ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhhcCCceEEEeehhhhh
Confidence 5666555555555544444 77777777788889999999999999999877777777777777 788999999999999
Q ss_pred HHH-hHHHHHHHHH-hhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhh
Q psy16660 196 GVF-AVTFSVVFAY-VADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSL 273 (594)
Q Consensus 196 Gi~-~~~~~~~~a~-i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~ 273 (594)
|+. +..++.--++ ++|..+ +|+.-.-+ .+.
T Consensus 135 GiaTsLLFSaFEsWliaEHne--kr~FeqqW----------------------------------------------ls~ 166 (454)
T KOG4332|consen 135 GIATSLLFSAFESWLIAEHNE--KRGFEQQW----------------------------------------------LSV 166 (454)
T ss_pred hHHHHHHHHHHHHHHHHHhhh--ccCChHhh----------------------------------------------hhH
Confidence 998 6666666554 455432 33321111 111
Q ss_pred hhcccccccchhHHHhhHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCCccc
Q psy16660 274 AYGLSFSFSQVSATFAASMVFSPALGAYLEKTY--SLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWE 351 (594)
Q Consensus 274 ~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~--gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~ 351 (594)
.++-. .....++-.++..+.+-.+.+++ |.-.+|-.++.+..++..+++--..|.-.+..++++ -
T Consensus 167 TFskA-----~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENygdps~~kd--------l 233 (454)
T KOG4332|consen 167 TFSKA-----VFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGDPSENKD--------L 233 (454)
T ss_pred HHHHH-----HHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCChhhhHH--------H
Confidence 11100 11223333444455555565544 566778776666555555544333343221111100 0
Q ss_pred cCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16660 352 QADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGF--DEVHVAVFIAVIGTLSVSAQIILGCLMNVL 429 (594)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~ 429 (594)
..+-....+.+..|+++..+-....++- ..++++..++... +.- ...--|.+++.+.++++.|+-+..++..|-
T Consensus 234 ltqf~gaa~aiaSD~ki~LLG~iqsLFE---~smytFVFLWTPa-Lspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s 309 (454)
T KOG4332|consen 234 LTQFKGAARAIASDEKIALLGAIQSLFE---GSMYTFVFLWTPA-LSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRS 309 (454)
T ss_pred HHHhhHhHHHHhcchHHHHHHHHHHHHh---hhhheeeeeeccc-CCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcC
Confidence 0011123344556777666555544432 2232222222211 111 112358899999999999999998888765
Q ss_pred chH--HHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHH
Q psy16660 430 GAK--HTIIIGLVFEMLQLMWYGFG-------SQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMR 499 (594)
Q Consensus 430 g~~--~~l~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 499 (594)
..| ..+.+.+++....+.+.... .++..-.++.+++-.. |..+|.+.-+-++..|++.|++.+-.+..--
T Consensus 310 ~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPL 389 (454)
T KOG4332|consen 310 SPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPL 389 (454)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechh
Confidence 543 44555555544444433321 1233445666666666 8999999999999999999988877665544
Q ss_pred HH
Q psy16660 500 GL 501 (594)
Q Consensus 500 ~l 501 (594)
++
T Consensus 390 ni 391 (454)
T KOG4332|consen 390 NI 391 (454)
T ss_pred hH
Confidence 43
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.6e-09 Score=109.75 Aligned_cols=166 Identities=16% Similarity=0.147 Sum_probs=126.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----chHH-HHHHHHHHHHHHHHH
Q psy16660 375 VFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVL-----GAKH-TIIIGLVFEMLQLMW 448 (594)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~-----g~~~-~l~~~~~~~~i~~~~ 448 (594)
++............+|.|+++. |++.++.|++...... .+..++.|++.||+ |+|| .+..+.++.++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~-g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~ 84 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMTVE-GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA 84 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence 4444555566677889999985 9999999998666554 58889999999999 7765 677777777777766
Q ss_pred Hhhh---hhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHh-hccCCC
Q psy16660 449 YGFG---SQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMF-HVDLSD 523 (594)
Q Consensus 449 ~~~~---~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~-g~~~~~ 523 (594)
+.+. .+.|.+.+..++.++. ....+...+++.|..|+++|+++.++......+|..+++.+.+.+.+.. |++
T Consensus 85 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~--- 161 (402)
T PRK11902 85 MAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG--- 161 (402)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH---
Confidence 6664 3456555555556665 6777899999999999999999999999999999999999999888743 444
Q ss_pred CCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhccCc
Q psy16660 524 GPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIPES 571 (594)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 571 (594)
..|.+.+++.++..+..++.+++
T Consensus 162 -------------------------~~f~i~a~~~l~~~l~~~~~~e~ 184 (402)
T PRK11902 162 -------------------------NTYLLMAGLMLAGALTTLWAPEP 184 (402)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHhcCCC
Confidence 67777666666555555555554
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-10 Score=119.68 Aligned_cols=178 Identities=17% Similarity=0.245 Sum_probs=144.8
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q psy16660 367 TILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQL 446 (594)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~ 446 (594)
....+++...+.+.-.+.+.... .=.++.+|.++...|++.....+..++.+++.|.+.||++|++++.+|..+..++.
T Consensus 34 ~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av 112 (493)
T KOG1330|consen 34 TLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAV 112 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHH
Confidence 34445555555544444333322 23456689999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCC
Q psy16660 447 MWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGP 525 (594)
Q Consensus 447 ~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~ 525 (594)
+.-++..+.|.+.+.-.+.|+| ..+.|..+++++|.+|+++|+++++++++...+|..+|-..++.+.+..++
T Consensus 113 ~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~------ 186 (493)
T KOG1330|consen 113 FASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW------ 186 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc------
Confidence 9999999999999999999999 899999999999999999999999999999999999998888888776552
Q ss_pred CCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHH-hccCcc
Q psy16660 526 DVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVAT-FIPESI 572 (594)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~ 572 (594)
+++.|.+.+++.++..++.+ +.++++
T Consensus 187 ---------------------Wr~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 187 ---------------------WRWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred ---------------------eEEEEEeehHHHHHHHHHHHhhccCcc
Confidence 34778777777666555544 444443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.4e-09 Score=126.65 Aligned_cols=155 Identities=18% Similarity=0.181 Sum_probs=124.3
Q ss_pred hccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q psy16660 362 VGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDE--VHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGL 439 (594)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~ 439 (594)
.++++.++.++...++..+........+..++...++.+. ...++..+++.++.+++.++.|+++||+|||++++.+.
T Consensus 5 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~ 84 (1146)
T PRK08633 5 LLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVK 84 (1146)
T ss_pred hhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHH
Confidence 4577788888777777666655555555555555556543 34678888899999999999999999999999999887
Q ss_pred HHHHHHHHHHh---hhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16660 440 VFEMLQLMWYG---FGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFY 515 (594)
Q Consensus 440 ~~~~i~~~~~~---~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~ 515 (594)
++.++..++.. ..++.+.+++..++.|++ +...+...+++.+.+|+++|++++|+......+|.++|+.+++.+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~ 164 (1146)
T PRK08633 85 LFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE 164 (1146)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555444333 345677888888889988 88889999999999999999999999999999999999999999987
Q ss_pred H
Q psy16660 516 M 516 (594)
Q Consensus 516 ~ 516 (594)
.
T Consensus 165 ~ 165 (1146)
T PRK08633 165 S 165 (1146)
T ss_pred h
Confidence 6
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-08 Score=110.88 Aligned_cols=147 Identities=10% Similarity=0.067 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--CCChhHHHHHH-----HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q psy16660 369 LMLCVTVFLSYLPEAGQYSCLFVYLKLVM--GFDEVHVAVFI-----AVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVF 441 (594)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~g~~~-----~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~ 441 (594)
....+..++-+.-........+.+..+.+ +.++. .+... +...++..++.++.|++.||+|||+.+..+.++
T Consensus 25 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~ 103 (438)
T PRK09952 25 LGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWM 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHH
Confidence 33333444433333333333344444444 56655 34432 233345568889999999999999999999999
Q ss_pred HHHHHHHHhhhhhHH--------HHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHH
Q psy16660 442 EMLQLMWYGFGSQMW--------MMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGL 512 (594)
Q Consensus 442 ~~i~~~~~~~~~~~~--------~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~ 512 (594)
.+++.++.++.++.+ .+.+.-++.|++ +..++....++.|..|+++||...+..+....+|..+++.+...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~ 183 (438)
T PRK09952 104 MGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSL 183 (438)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988887755 355667788888 88888889999999999999999999988888888888887777
Q ss_pred HHHH
Q psy16660 513 IFYM 516 (594)
Q Consensus 513 l~~~ 516 (594)
+...
T Consensus 184 l~~~ 187 (438)
T PRK09952 184 ISMM 187 (438)
T ss_pred HHHh
Confidence 6543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.4e-08 Score=108.34 Aligned_cols=176 Identities=14% Similarity=0.143 Sum_probs=117.2
Q ss_pred CCchhHHHHHHHHHHHHhhhhhhhHHHHH-HhhCCCchhHHHHHHH-HHHHHHHHHHhhHhhhhhcccCchhhHHHHHHH
Q psy16660 96 EPSVYHALVVIFLEFFAWGLLTMPIISVL-NRTFPDHTFLMNGLIM-GIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 173 (594)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~-s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~ 173 (594)
++..+.+....++..++... .....+.+ .++.+.+..+. |++. ....++..++.++.|+++||+|+|+.+.++.++
T Consensus 221 ~~~~~~~ll~~~l~~~~~~~-~~~~~~~~l~~~~G~s~~~~-g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l 298 (491)
T PRK11010 221 RNNAWLILLLIVLYKLGDAF-AMSLTTTFLIRGVGFDAGEV-GLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGIL 298 (491)
T ss_pred CcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33344333333433333333 23334444 45566665555 8887 466689999999999999999998887665544
Q ss_pred hhhhhhh-----hc-chHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhh
Q psy16660 174 TCLPIPL-----MT-LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMIS 246 (594)
Q Consensus 174 ~~i~~~~-----~~-~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 246 (594)
.++..++ .. .+.+.+.+.-++..+. +...+...++..+..+++.+++.+++
T Consensus 299 ~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl---------------------- 356 (491)
T PRK11010 299 QGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFAL---------------------- 356 (491)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHH----------------------
Confidence 3333221 11 2444444455555554 33445557788888888888888888
Q ss_pred hccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHh
Q psy16660 247 ISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFI 326 (594)
Q Consensus 247 ~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~ 326 (594)
.+...++|..+++.++|++.+..||+..|.+.+++++++.++.
T Consensus 357 -------------------------------------~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~ 399 (491)
T PRK11010 357 -------------------------------------LSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLL 399 (491)
T ss_pred -------------------------------------HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 8888899999888899999999999999999988888876655
Q ss_pred heeccCC
Q psy16660 327 LVAVPES 333 (594)
Q Consensus 327 ~~~l~e~ 333 (594)
.+ ++++
T Consensus 400 ~~-~~~~ 405 (491)
T PRK11010 400 LV-CRQT 405 (491)
T ss_pred HH-HHhc
Confidence 44 4543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-09 Score=117.67 Aligned_cols=125 Identities=14% Similarity=0.101 Sum_probs=110.5
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHh-hchH
Q psy16660 396 VMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFG--SQMWMMWAAGILASLA-SITY 472 (594)
Q Consensus 396 ~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~g~~-~~~~ 472 (594)
.++++..+.|.+.+.+.++.+++.++.|++.||+|+|+.+..+.++.+++.++..+. .+.+.+++.-++.|++ +...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence 478999999999999999999999999999999999999999988888877665443 3456677778888998 8889
Q ss_pred hHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHh-hcc
Q psy16660 473 PAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMF-HVD 520 (594)
Q Consensus 473 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~-g~~ 520 (594)
+....++.+..|+++|++++|+.+....+|..+++.+.+.+.+.. |++
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~ 198 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWP 198 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999999999999999998763 554
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.4e-09 Score=109.02 Aligned_cols=141 Identities=15% Similarity=0.176 Sum_probs=107.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchH----HHHHHHHHHHHHHHHHHh
Q psy16660 375 VFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAK----HTIIIGLVFEMLQLMWYG 450 (594)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~----~~l~~~~~~~~i~~~~~~ 450 (594)
.+.++........++|.|+++ +|.+..+.|+..+...+..++++++.|++.||++|+ +.+.++..+ .......
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~-~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~--~~~~~~~ 89 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKG-QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL--FAVAFWF 89 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH--HHHHHHH
Confidence 445555566777788899977 699999999999999999999999999999999984 233222211 1222233
Q ss_pred hhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 451 FGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 451 ~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
..++.|.+++...+.+++ +...|...++..+. .++++++.+......++|..+||.+++.+.++.|++
T Consensus 90 ~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~ 158 (382)
T PRK11128 90 GAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQ 158 (382)
T ss_pred hcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 356788877777777877 66777777776665 356788889999999999999999999999988766
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-06 Score=91.57 Aligned_cols=251 Identities=14% Similarity=0.121 Sum_probs=134.5
Q ss_pred hhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHh-------c-ChH----HHHHHHHHHHHHHHH
Q psy16660 257 VVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKT-------Y-SLS----LVVAVATAVAILDVF 324 (594)
Q Consensus 257 ~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~-------~-gw~----~~f~~~~~~~ll~~~ 324 (594)
.-.++.+|.++++|-.|-+++ ++.+.++|.++|+.+..++.+. . .|. ..+.+.++..++...
T Consensus 149 lFW~fandi~t~~qakRfy~l------~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 222 (472)
T TIGR00769 149 LFWGFANQITTIDEAKRFYAL------FGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIIL 222 (472)
T ss_pred HHHHHHHhcCCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 334667777777777777777 9999999999999888887631 1 232 233333333333222
Q ss_pred HhheeccCCCchhhccCCC-CCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhH
Q psy16660 325 FILVAVPESLPEKVRQASW-GGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVH 403 (594)
Q Consensus 325 ~~~~~l~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 403 (594)
+ ...+.+....+++..+. +..+.+.++.+..++++.++++|.++.+++...++.......+...-..+.+.+- ++.+
T Consensus 223 ~-~~~l~~~~~~~~~~~~~~~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p-~~~~ 300 (472)
T TIGR00769 223 L-YWWVNRNVLTDPRSYNPALKEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYP-SPNE 300 (472)
T ss_pred H-HHHHHhcccCCccccchhhccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHH
Confidence 2 22232211111100000 0011122344567888889999999988888888777666666555555555543 3333
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH---HHHHHhhhhh--------------HHHHHHHH
Q psy16660 404 ----VAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEML---QLMWYGFGSQ--------------MWMMWAAG 462 (594)
Q Consensus 404 ----~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i---~~~~~~~~~~--------------~~~~~~~~ 462 (594)
.|.+....++..++..++.+++.+|+|=+....+.-++..+ +++.+....+ ....+++.
T Consensus 301 ~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~lit~~~Ff~~~~f~~~~~~~~~~l~~~pl~l~v~~g~ 380 (472)
T TIGR00769 301 YSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLLTGVAFFSLIFFGGPAAPLVAKLGMTPLLLAVYVGA 380 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccChHHHHHHHHH
Confidence 34455556666666677779999999976555444333222 3332211111 11111121
Q ss_pred HHHHHh-hchH---hHHHHHHhhcCCCccchHHHHHHHHHH-HHHHhHHHHHHHHHHH
Q psy16660 463 ILASLA-SITY---PAISALVSMHSDADRQGLVQGMVTGMR-GLCNGLGPAMFGLIFY 515 (594)
Q Consensus 463 ~l~g~~-~~~~---~~~~~~~~~~~p~~~~g~~~g~~~~~~-~lg~~lg~~~~g~l~~ 515 (594)
+...+. ..-+ -+.--++.--.+++.|.++=+....+. .+|-..|..+...+..
T Consensus 381 ~~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD~v~~r~Gks~gs~i~~~l~~ 438 (472)
T TIGR00769 381 IQNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARLGKSGGALIQQGLLV 438 (472)
T ss_pred HHHHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 121222 2222 222223333456777887777766554 4777777776655443
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=109.57 Aligned_cols=116 Identities=18% Similarity=0.209 Sum_probs=105.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHhHHHHHH
Q psy16660 400 DEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLASITYPAISALV 479 (594)
Q Consensus 400 s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 479 (594)
+..-.|++-+.+++...+.++..|.++||+|||.++.++++..++..++++.+.++..++.+-++.|+.-.......+++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAii 145 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAII 145 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999998556666788888866778889999
Q ss_pred hhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16660 480 SMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFY 515 (594)
Q Consensus 480 ~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~ 515 (594)
+|.+++++|+.+++.+....++|.++||.++|++.+
T Consensus 146 sdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 146 SDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 999999999999999999999999999999999987
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.2e-09 Score=110.90 Aligned_cols=180 Identities=19% Similarity=0.261 Sum_probs=157.1
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhC----CChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHH
Q psy16660 365 DQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMG----FDEVHVAVFIAVIGTLSVSAQIILGCLMNVL-GAKHTIIIGL 439 (594)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~-g~~~~l~~~~ 439 (594)
.|.++.+...-+.--+.++++...+..|+...++ +++.++.-++..++...-+..+++|+++||+ |+|+.+..|.
T Consensus 20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGa 99 (498)
T COG3104 20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGA 99 (498)
T ss_pred CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 4557777888888899999999999999988888 9998888888877777778899999999997 9999999999
Q ss_pred HHHHHHHHHHhhhh--hHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCc--cchHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16660 440 VFEMLQLMWYGFGS--QMWMMWAAGILASLA-SITYPAISALVSMHSDAD--RQGLVQGMVTGMRGLCNGLGPAMFGLIF 514 (594)
Q Consensus 440 ~~~~i~~~~~~~~~--~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~lg~~lg~~~~g~l~ 514 (594)
+++.++.++++..+ +...+++++.+.++| |..=+...+++.|.+|++ +|-.+.+++....++|+.++|.+.+++.
T Consensus 100 il~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~ 179 (498)
T COG3104 100 ILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLA 179 (498)
T ss_pred HHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHH
Confidence 99999999999874 677888899999999 888899999999999875 4667888888999999999999999999
Q ss_pred HHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhccCcc
Q psy16660 515 YMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIPESI 572 (594)
Q Consensus 515 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 572 (594)
+..|+. ..|..+++-...+++.++..++.-
T Consensus 180 ~~~g~~----------------------------~gF~~aavGm~~gl~~f~~~~r~~ 209 (498)
T COG3104 180 INYGWH----------------------------VGFGLAAVGMIIGLVIFLLGRRHV 209 (498)
T ss_pred HhhCHH----------------------------HHHHHHHHHHHHHHHHHHHccchh
Confidence 998865 889999999999998888777653
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-08 Score=108.35 Aligned_cols=170 Identities=11% Similarity=0.057 Sum_probs=119.7
Q ss_pred cCCchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHH-HHHHHhhHhhhhhcccCchhhHHHHHHH
Q psy16660 95 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGF-LSFLSAPLIGALSDLWGRKLFLLITVFV 173 (594)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l-~~~l~~~~~G~lsDr~Grr~~l~~~~~~ 173 (594)
+++.++......++...+... .....+.+.+|.+.+..+. |++.....+ ...++.++.|++.||+|+|+.+..+.++
T Consensus 206 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~G~s~~~i-g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~ 283 (390)
T TIGR02718 206 RRPLAWSLLALALLSAMTAVS-GFGLSKLYLVDAGWPLEWI-GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGL 283 (390)
T ss_pred cCcCHHHHHHHHHHHHHHHHH-HHHHhhHHHHhcCCCHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345555555555555555555 5567778888877666555 998887764 6667789999999999999998776654
Q ss_pred hhhhhhh-h-------cchHHHHHHHHHHHHHH-hHHHHHHHHHhhccccc-ccccchhchhHHHHHHHHhhhhhhhHHH
Q psy16660 174 TCLPIPL-M-------TLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEE-HERSLAYGLKFIALKIILMTLDTWWFFA 243 (594)
Q Consensus 174 ~~i~~~~-~-------~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~-~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 243 (594)
..+.... + ..+.+.++....+.+++ +...+...+.+.+..++ +++++.+++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~------------------- 344 (390)
T TIGR02718 284 AGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTA------------------- 344 (390)
T ss_pred HHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHH-------------------
Confidence 4222211 1 12333444445555665 44555666676666665 778888888
Q ss_pred HhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Q psy16660 244 MISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDV 323 (594)
Q Consensus 244 ~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~ 323 (594)
.+...++|..+||.++|++.+..|++..|++.+++.+++.
T Consensus 345 ----------------------------------------~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 345 ----------------------------------------VQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998887776654
Q ss_pred HH
Q psy16660 324 FF 325 (594)
Q Consensus 324 ~~ 325 (594)
++
T Consensus 385 ~~ 386 (390)
T TIGR02718 385 LL 386 (390)
T ss_pred HH
Confidence 43
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-08 Score=108.71 Aligned_cols=148 Identities=11% Similarity=0.089 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHH-HHH-----HHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q psy16660 367 TILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFI-AVI-----GTLSVSAQIILGCLMNVLGAKHTIIIGLV 440 (594)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~-~~~-----~i~~~~~~~~~g~l~dr~g~~~~l~~~~~ 440 (594)
.....++..++.+.-........|.. .+.++.++.+.+... +.. .++..++.++.|++.||+|||+.+..+..
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~ 94 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAI-AKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLS 94 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHH
Confidence 34455556666665555555555544 445787776654332 211 22224678999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHH--------HHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHH
Q psy16660 441 FEMLQLMWYGFGSQMWM--------MWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFG 511 (594)
Q Consensus 441 ~~~i~~~~~~~~~~~~~--------~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g 511 (594)
+.+++.++.++.++.+. +++.-++.|++ +...+....++.|.+|+++||+++++.+...++|..+++.+++
T Consensus 95 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~ 174 (434)
T PRK15075 95 IMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGY 174 (434)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888877653 45666778888 7778888899999999999999999999999999998888888
Q ss_pred HHHH
Q psy16660 512 LIFY 515 (594)
Q Consensus 512 ~l~~ 515 (594)
.+..
T Consensus 175 ~l~~ 178 (434)
T PRK15075 175 LLNQ 178 (434)
T ss_pred HHHH
Confidence 7754
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-08 Score=107.15 Aligned_cols=190 Identities=14% Similarity=0.158 Sum_probs=132.7
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHH----hhchHHHHHHH-HHH
Q psy16660 367 TILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMN----VLGAKHTIIIG-LVF 441 (594)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~d----r~g~~~~l~~~-~~~ 441 (594)
++..++...+...+.+.....+.+.|+++ +|.++...+.+.....+..++..++.|+++| |+|||+..+.+ .+.
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~ 83 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHH
Confidence 34455555555666666777788888765 7999999999999999999999999999999 59999887764 666
Q ss_pred HHHHHHHHhhhhhH-----------------HHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccc--hHHHHHHHHHHHH
Q psy16660 442 EMLQLMWYGFGSQM-----------------WMMWAAGILASLA-SITYPAISALVSMHSDADRQ--GLVQGMVTGMRGL 501 (594)
Q Consensus 442 ~~i~~~~~~~~~~~-----------------~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~--g~~~g~~~~~~~l 501 (594)
..+++.++++.++. +...++..+..++ ....+...+++.|.+|+++| +.+.++.+...++
T Consensus 84 ~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~l 163 (477)
T TIGR01301 84 VAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAI 163 (477)
T ss_pred HHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHH
Confidence 66777777664432 2223334444455 66778889999999998865 6899999999999
Q ss_pred HHhHHHHHHHHH--HHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHH-hccCcc
Q psy16660 502 CNGLGPAMFGLI--FYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVAT-FIPESI 572 (594)
Q Consensus 502 g~~lg~~~~g~l--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~ 572 (594)
|+.+|+.+++.. .+.++....+.. ...-......|.+++++++++.++.. ..+|++
T Consensus 164 G~ilg~~~g~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 164 GNVLGYAAGAYSGLYKIFPFTKTEAC---------------GVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHhHHHhccccccccc---------------ccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 999999999875 333332210000 00112345678888777766665554 445543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-08 Score=105.46 Aligned_cols=129 Identities=13% Similarity=0.084 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy16660 387 SCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILAS 466 (594)
Q Consensus 387 ~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g 466 (594)
..+|.+. +.+|++..+.|+..+...++..++.++.|++.||+|+|+.+..+.++.+++.+.. ..++.+.+++..++.|
T Consensus 21 ~~lp~l~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 98 (355)
T TIGR00896 21 PLLPQIR-SALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIG 98 (355)
T ss_pred ccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHH
Confidence 3455554 4579999999999999999999999999999999999999999988887777766 5677777777778888
Q ss_pred Hh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy16660 467 LA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 467 ~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g 518 (594)
++ +...+.....+.+..| ++|+++.+..+....+|..+++.+.+.+.+..+
T Consensus 99 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~ 150 (355)
T TIGR00896 99 VGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG 150 (355)
T ss_pred HHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88 6666667777788775 689999999999999999999999998887643
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.3e-09 Score=119.45 Aligned_cols=127 Identities=9% Similarity=0.105 Sum_probs=113.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhh-----------------
Q psy16660 391 VYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGS----------------- 453 (594)
Q Consensus 391 ~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~----------------- 453 (594)
.-++.+++++..+.|++.+.+.++..++.++.+++.||.+|++.+.++.++++++.+++++.+
T Consensus 57 ~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~ 136 (633)
T TIGR00805 57 TTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGN 136 (633)
T ss_pred hhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccc
Confidence 455667899999999999999999999999999999999999999999999999998877643
Q ss_pred ----------------------------------hHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHH
Q psy16660 454 ----------------------------------QMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGM 498 (594)
Q Consensus 454 ----------------------------------~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 498 (594)
....++++-++.|+| +..++...+++.|.+|+++|+.+.|+.+..
T Consensus 137 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~ 216 (633)
T TIGR00805 137 LSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESI 216 (633)
T ss_pred ccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHH
Confidence 123456788899999 888899999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHh
Q psy16660 499 RGLCNGLGPAMFGLIFYMF 517 (594)
Q Consensus 499 ~~lg~~lg~~~~g~l~~~~ 517 (594)
..+|..+|+.+++.+.+.+
T Consensus 217 ~~iG~~lG~llgg~l~~~~ 235 (633)
T TIGR00805 217 AVFGPAFGYLLGSFCLQIY 235 (633)
T ss_pred HHhhhHHHHHHHHHHHhcc
Confidence 9999999999999998754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.9e-09 Score=114.78 Aligned_cols=146 Identities=13% Similarity=0.105 Sum_probs=124.8
Q ss_pred HHhCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hc
Q psy16660 395 LVMGFD---EVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SI 470 (594)
Q Consensus 395 ~~~g~s---~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~ 470 (594)
+.++++ +.+.++..+...++.+++.++.|+++||+|||+.+..+.++..++.++..+.++.+.+++..++.|++ +.
T Consensus 117 ~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~ 196 (505)
T TIGR00898 117 TEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGG 196 (505)
T ss_pred EEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccc
Confidence 446887 88899999999999999999999999999999999999999999998888899999999999999999 88
Q ss_pred hHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChh
Q psy16660 471 TYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPP 550 (594)
Q Consensus 471 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (594)
..+...+++.|.+|+++|+.+.++......+|.++++.+.+.+.+ ++ ..
T Consensus 197 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr----------------------------~~ 245 (505)
T TIGR00898 197 IWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WR----------------------------WL 245 (505)
T ss_pred hHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HH----------------------------HH
Confidence 899999999999999999999999988899999998888766644 22 56
Q ss_pred HHHHHHHHHHHHHHHHhccCc
Q psy16660 551 FVFGALLVIAALLVATFIPES 571 (594)
Q Consensus 551 f~~~~~~~~~~~~~~~~~~~~ 571 (594)
|.+.++..++..+..++++|.
T Consensus 246 ~~~~~i~~~~~~~~~~~~~es 266 (505)
T TIGR00898 246 QLAVSLPTFLFFLLSWFVPES 266 (505)
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 666666666665556666664
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-08 Score=104.55 Aligned_cols=160 Identities=15% Similarity=0.131 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----chHHH-HHHHHHHHHHHHHHHhhh---hhH
Q psy16660 385 QYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVL-----GAKHT-IIIGLVFEMLQLMWYGFG---SQM 455 (594)
Q Consensus 385 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~-----g~~~~-l~~~~~~~~i~~~~~~~~---~~~ 455 (594)
.....|.+.++ .|++..+.|+.... .+...+ .++.|++.||+ |||+. +..+.++.++....+.+. .+.
T Consensus 7 ~~~~~~~~~~~-~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l 83 (356)
T TIGR00901 7 VGNTLPYWLRS-KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDL 83 (356)
T ss_pred HHhHHHHHHHH-cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhH
Confidence 34456777776 69999999998644 344444 88999999998 78776 456666666666566554 344
Q ss_pred HHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccc
Q psy16660 456 WMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLAN 534 (594)
Q Consensus 456 ~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 534 (594)
+.+....++.++. ....+...+++.|.+|+++|+.+.|+.....++|..+++.+.+.+.+..|..
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~-------------- 149 (356)
T TIGR00901 84 PLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFAN-------------- 149 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--------------
Confidence 4455555555655 6677888999999999999999999999999999999999999998876621
Q ss_pred cCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHh
Q psy16660 535 RTNNVNSYPSVIPGPPFVFGALLVIAALLVATF 567 (594)
Q Consensus 535 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 567 (594)
....+++...|++.+++.+++.+..++
T Consensus 150 ------~~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 150 ------TGLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred ------cccccccHHHHHHHHHHHHHHHHHHHH
Confidence 001234557888777776666655443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.7e-08 Score=105.40 Aligned_cols=126 Identities=10% Similarity=0.076 Sum_probs=100.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh------hhHHHHHHH
Q psy16660 388 CLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFG------SQMWMMWAA 461 (594)
Q Consensus 388 ~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~------~~~~~~~~~ 461 (594)
.....+++.+|++..+.+.+.... .......++.|++.||+|+|+++.++.++..++.++.++. ++.+.+++.
T Consensus 48 v~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~ 126 (591)
T PTZ00207 48 LISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVY 126 (591)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence 333456777899999999887653 3333566678999999999999999999999999888876 578888888
Q ss_pred HHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16660 462 GILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFY 515 (594)
Q Consensus 462 ~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~ 515 (594)
.++.|++ +...+.....+.+.+| ++||++.|+......+|.++.+.+...++.
T Consensus 127 r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~ 180 (591)
T PTZ00207 127 NGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS 180 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888988 7777777777888885 788999999999999999875555555443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-07 Score=96.63 Aligned_cols=143 Identities=15% Similarity=0.153 Sum_probs=124.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh-
Q psy16660 374 TVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFG- 452 (594)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~- 452 (594)
+.|+.+......+..+.+.+++.++.+..+++++...+..+..++++..+++.+|+|.|+-++.|+.++++++.++...
T Consensus 20 ~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa 99 (422)
T COG0738 20 SLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA 99 (422)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344444445566677788899999999999999999999999999999999999999999999999999999998643
Q ss_pred --hhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16660 453 --SQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYM 516 (594)
Q Consensus 453 --~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~ 516 (594)
.+...++.+.++.+.| +...+..+.++....|++....-+.+.+....+|.+++|.+++.+...
T Consensus 100 ~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 100 SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 3455666777888888 889999999999999998889999999999999999999999999873
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.7e-08 Score=107.25 Aligned_cols=153 Identities=12% Similarity=0.127 Sum_probs=110.0
Q ss_pred cCCchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHh
Q psy16660 95 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 174 (594)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~ 174 (594)
+++.++.+....++..++... .....+.+.++..+++. ..+++.++..++..++.+++|+++||+|+|+++.++.++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~ 297 (437)
T TIGR00792 220 KNDQLLILCLAYLFYNLAFNI-KNGVQVYYFTYVLGDPE-LFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLM 297 (437)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HcchhheeEeeecCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 445555555555555555444 33444555544434334 3478888889999999999999999999999998887777
Q ss_pred hhhhhhh--c-chHHHHHHHHHHHHHH-hHHHHHHHHHhhccccc-------ccccchhchhHHHHHHHHhhhhhhhHHH
Q psy16660 175 CLPIPLM--T-LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEE-------HERSLAYGLKFIALKIILMTLDTWWFFA 243 (594)
Q Consensus 175 ~i~~~~~--~-~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~-------~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 243 (594)
+++.+++ . .+.+.+++..++.|++ +...+...++++|..+. +++|..+|+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~------------------- 358 (437)
T TIGR00792 298 VLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSV------------------- 358 (437)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHH-------------------
Confidence 6665552 2 3566677777888887 66677778888888763 345666666
Q ss_pred HhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcCh
Q psy16660 244 MISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSL 308 (594)
Q Consensus 244 ~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw 308 (594)
.+....+|..+|+.+.+++.+..||
T Consensus 359 ----------------------------------------~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 359 ----------------------------------------RTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8888999999999999999887666
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.4e-07 Score=95.22 Aligned_cols=326 Identities=12% Similarity=0.167 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhH-HHHHHHHHhhccccccc
Q psy16660 140 MGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL-MTLDTWWFFAMISISGVFAV-TFSVVFAYVADVTEEHE 217 (594)
Q Consensus 140 ~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~-~~~~~~~l~~~r~l~Gi~~~-~~~~~~a~i~~~~~~~~ 217 (594)
.++-+....++.++.+.+.|+.|.|+.+.++...+..-... +-.|-+.++++-.+.|+|++ .+..-..++++...+|.
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~t 135 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRET 135 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceehhhcCChhh
Confidence 67778888889999999999999999999998887766555 55688899999999999955 56666789999999998
Q ss_pred ccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccch---hhhhhhhhhcccccccchhHHHhhHHHH
Q psy16660 218 RSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVT---EEHERSLAYGLSFSFSQVSATFAASMVF 294 (594)
Q Consensus 218 r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t---~~~~r~~~~g~~~~~~~~~~~~~~g~~i 294 (594)
+.+..++ .|=++-+--+.|+ .......+.++.. +..+|...+.. .
T Consensus 136 ie~Nisi-------------~Wai~~~~li~Gg---i~l~~~~~~~~~~~~~~~~~~~~~~~~------~---------- 183 (461)
T KOG3098|consen 136 IERNISI-------------FWAIGQSSLIIGG---IILFIYFQFSSSSAIITDGTRRLVFEV------L---------- 183 (461)
T ss_pred HHHHHHH-------------HHHHHHHHHHhhh---HhheeeeEecccccccccchhhhhcch------h----------
Confidence 8888887 3322211111221 1222222222221 11111111111 0
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHH
Q psy16660 295 SPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVT 374 (594)
Q Consensus 295 gp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (594)
... +.-+..+.+...+..+..+. ..++|.+.....++.. + ....+..+..-+.+++++.+.+...
T Consensus 184 ---~~~-----~~i~~~~~v~~~~~~l~~i~-~~~~p~~~~~~~~~~~-~-----~~~~~~l~~~~~l~~~~~ml~L~~~ 248 (461)
T KOG3098|consen 184 ---FID-----FEIKVLFGVLLAISVLSIIN-FDFLPSKDVVNCKSSS-E-----TSFSELLKLTFKLLKTPKMLLLFPF 248 (461)
T ss_pred ---hhh-----HHHHHHHHHHHHHHHHHhhh-eeecCccchhhhhhhc-c-----ccHHHHHHHHHHHhcCHhHHHHHHH
Confidence 000 11112222222233332222 2234432221111110 0 0111222334455578887777766
Q ss_pred HHHHHHhhhhHHHHHHHHHHH--HhCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHH
Q psy16660 375 VFLSYLPEAGQYSCLFVYLKL--VMGFD-EVHVAVFIAVIGTLSVSAQIILGCLMNVL---GAKHTIIIGLVFEMLQLMW 448 (594)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~--~~g~s-~~~~g~~~~~~~i~~~~~~~~~g~l~dr~---g~~~~l~~~~~~~~i~~~~ 448 (594)
.+..++.........|..+.- ..+.+ ..-.++.....+++.++++...+.+.+|. |+++.+.++..+..+++++
T Consensus 249 f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~l 328 (461)
T KOG3098|consen 249 FFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLL 328 (461)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHH
Confidence 666555544444444533221 12222 23346666777788888888888887654 6778888887777666665
Q ss_pred Hhhh------------------hhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHH
Q psy16660 449 YGFG------------------SQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAM 509 (594)
Q Consensus 449 ~~~~------------------~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~ 509 (594)
.... ++.....+..+++|++ .+.....+.++.... +++|.++.++.-+-..++..++-..
T Consensus 329 i~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 329 IHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 4431 1334566677788999 888888899999988 6788888888888888777766555
Q ss_pred HHHH
Q psy16660 510 FGLI 513 (594)
Q Consensus 510 ~g~l 513 (594)
....
T Consensus 408 ~~~~ 411 (461)
T KOG3098|consen 408 SPYL 411 (461)
T ss_pred hhhh
Confidence 5443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.9e-08 Score=105.32 Aligned_cols=178 Identities=15% Similarity=0.169 Sum_probs=138.2
Q ss_pred ccCCchhHHHHHHHHHHHHhhhhhhhHHHHHHh-hCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCch--hhHHHH
Q psy16660 94 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNR-TFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRK--LFLLIT 170 (594)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr--~~l~~~ 170 (594)
++.+.....++..++..-+.+. +..+...|.. +++.++.+. ..+.-+..+...++++++|++.||+|.| ++++++
T Consensus 278 ~~~~~~~~fLia~~l~~dg~~t-i~~~~~i~a~~~lg~s~~~l-~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~ 355 (477)
T PF11700_consen 278 RKLRQLFLFLIAYFLYSDGVNT-IISFAGIYATEVLGMSTTQL-IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLIS 355 (477)
T ss_pred HhChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 3445555555555655555555 5666666666 666666665 7777888899999999999999999998 887777
Q ss_pred HHHhhhhhhh--h--------cchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhh
Q psy16660 171 VFVTCLPIPL--M--------TLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTW 239 (594)
Q Consensus 171 ~~~~~i~~~~--~--------~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~ 239 (594)
+++..+..+. + ..+.+.+.+.-++.|+. ++.++...++.+++.|+++.+..+|+
T Consensus 356 l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgl--------------- 420 (477)
T PF11700_consen 356 LILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGL--------------- 420 (477)
T ss_pred HHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHH---------------
Confidence 6555332222 3 34788899999999998 88899999999999999999999999
Q ss_pred hHHHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcC-hHHHHHHHHHH
Q psy16660 240 WFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYS-LSLVVAVATAV 318 (594)
Q Consensus 240 ~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~g-w~~~f~~~~~~ 318 (594)
+....-.+..+||++-+.+.+..| .|..+....++
T Consensus 421 --------------------------------------------y~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~l 456 (477)
T PF11700_consen 421 --------------------------------------------YAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVL 456 (477)
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 999999999999999999998776 88888888888
Q ss_pred HHHHHHHhheeccCC
Q psy16660 319 AILDVFFILVAVPES 333 (594)
Q Consensus 319 ~ll~~~~~~~~l~e~ 333 (594)
.++.+++.+ .++++
T Consensus 457 f~~gl~ll~-~v~~~ 470 (477)
T PF11700_consen 457 FLIGLILLF-FVDVE 470 (477)
T ss_pred HHHHHHHHh-hccch
Confidence 787776654 35543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.4e-08 Score=107.57 Aligned_cols=149 Identities=14% Similarity=0.093 Sum_probs=106.2
Q ss_pred cchhHHHHHHHHHHHH----HhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q psy16660 364 KDQTILMLCVTVFLSY----LPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGL 439 (594)
Q Consensus 364 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~ 439 (594)
++++++..+....+.. +......+.++ +....+|-+ ....++.....++..+..++.|+++|.+|||..++.+.
T Consensus 38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~-~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~ 115 (599)
T PF06609_consen 38 RSPRFIASFAAFSLAVIAAYFVLVLPASILP-YINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGS 115 (599)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHH
Confidence 4566555444333322 22222233334 344445754 56678888888999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16660 440 VFEMLQLMWYGFGSQMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIF 514 (594)
Q Consensus 440 ~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~ 514 (594)
++..++.++.+.+++...++.+..+.|+|..........++|..|.+.|+...++.....-....+++.+...+.
T Consensus 116 ~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~ 190 (599)
T PF06609_consen 116 LLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA 190 (599)
T ss_pred HHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence 999999999999999999999999999993333345666899999999988776665444444444555544443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.3e-07 Score=98.73 Aligned_cols=180 Identities=15% Similarity=0.186 Sum_probs=137.7
Q ss_pred ccCCchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHH
Q psy16660 94 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 173 (594)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~ 173 (594)
.+++.+...++..++.....+. .....+.|.++.++.+....|.+.++..+.=.+.-...+++..|+|.|+++.++.+.
T Consensus 204 lk~~~~~~Fll~~~l~~~~~~~-~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~ 282 (400)
T PF03825_consen 204 LKNPRFLVFLLAAFLIGISHAA-YYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVA 282 (400)
T ss_pred hcCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4456666666677777777777 778889999999865555558888888888888889999999999999999999988
Q ss_pred hhhhhhhhc---chHHHHHH----HHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHh
Q psy16660 174 TCLPIPLMT---LDTWWFFA----MISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMI 245 (594)
Q Consensus 174 ~~i~~~~~~---~~~~~l~~----~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 245 (594)
.++=..+++ .+.+...+ ...++|+. +........++.+..|++.|+++.++
T Consensus 283 ~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l--------------------- 341 (400)
T PF03825_consen 283 YAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGL--------------------- 341 (400)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHH---------------------
Confidence 888766633 33333333 34569996 78888999999999999999999998
Q ss_pred hhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHH-HhhHHHHHHHHHHHHHHhcChH------HHHHHHHHH
Q psy16660 246 SISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSAT-FAASMVFSPALGAYLEKTYSLS------LVVAVATAV 318 (594)
Q Consensus 246 ~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~-~~~g~~igp~l~~~l~~~~gw~------~~f~~~~~~ 318 (594)
+++. .++|..+|..++|++.+++|-+ ..+.+.+.+
T Consensus 342 --------------------------------------~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~ 383 (400)
T PF03825_consen 342 --------------------------------------YSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVM 383 (400)
T ss_pred --------------------------------------HHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 6654 7899999999999999987644 455566665
Q ss_pred HHHHHHHhheeccCC
Q psy16660 319 AILDVFFILVAVPES 333 (594)
Q Consensus 319 ~ll~~~~~~~~l~e~ 333 (594)
.++..++.+++.||+
T Consensus 384 ~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 384 ALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHhhccCC
Confidence 566555555556654
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.7e-08 Score=101.57 Aligned_cols=153 Identities=18% Similarity=0.308 Sum_probs=107.2
Q ss_pred ccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH--H
Q psy16660 363 GKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGL--V 440 (594)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~--~ 440 (594)
.||+.++.+....+++++.+....++++.++++..|+++.++|.+++...+..++.+++.|.+.||+|.||-++..+ +
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l 83 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAIL 83 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHH
Confidence 37888999999999999999999999999999878999999999999999999999999999999999665444332 2
Q ss_pred HHH-HHHHHHhhh----hhHHH-HHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16660 441 FEM-LQLMWYGFG----SQMWM-MWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLI 513 (594)
Q Consensus 441 ~~~-i~~~~~~~~----~~~~~-~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l 513 (594)
+.. ..++.+.+. .+.+. .+++.+.+++. ....|..-+++.+.. ++.+-=+|=....+++|.+++..+.|.+
T Consensus 84 ~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L 161 (412)
T PF01306_consen 84 LLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGIL 161 (412)
T ss_dssp HHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhhee
Confidence 222 222222222 22221 22222333444 445566666655443 4556677888999999999999999999
Q ss_pred HHHh
Q psy16660 514 FYMF 517 (594)
Q Consensus 514 ~~~~ 517 (594)
++..
T Consensus 162 ~~i~ 165 (412)
T PF01306_consen 162 FNIN 165 (412)
T ss_dssp HHHH
T ss_pred eeeC
Confidence 9753
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.4e-08 Score=105.05 Aligned_cols=126 Identities=13% Similarity=0.189 Sum_probs=115.1
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHh-hch
Q psy16660 395 LVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGS--QMWMMWAAGILASLA-SIT 471 (594)
Q Consensus 395 ~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~~-~~~ 471 (594)
..+++++.+.+++++....|.+++.+..+.+.||+|.|+++..+.++.+++.++..... +.+.+++.-++.|++ +..
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence 35789999999999999999999999999999999999999999999999988887754 345667788899999 999
Q ss_pred HhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHH-hhcc
Q psy16660 472 YPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYM-FHVD 520 (594)
Q Consensus 472 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~-~g~~ 520 (594)
+|....+..+-.|+++|++..++.....++|.+++-++.|.+-+. .|++
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~ 195 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWP 195 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCc
Confidence 999999999999999999999999999999999999999999987 6655
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.8e-07 Score=93.11 Aligned_cols=160 Identities=12% Similarity=0.084 Sum_probs=110.3
Q ss_pred cCCchhHHHHHHHHHHHHhhhhhhhHHHHHHhh---CCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHH
Q psy16660 95 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRT---FPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV 171 (594)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~ 171 (594)
+++.++...+..|+....... ....++.|.++ ++.+.. ..++..+.+..+..++.+..+++.||+|+|+++.++.
T Consensus 138 ~~~~~~l~~~~~f~yvg~e~~-~~~w~~~yl~~~~~~g~s~~-~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~ 215 (310)
T TIGR01272 138 QFTHLVLGALGIFVYVGAEVS-AGSFLVNFLSDPHALGLPED-QAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNA 215 (310)
T ss_pred hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 334444444444444333433 46667777764 344444 4599999999999999999999999999999888777
Q ss_pred HHhhhhhhhhc-chHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhcc
Q psy16660 172 FVTCLPIPLMT-LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISG 249 (594)
Q Consensus 172 ~~~~i~~~~~~-~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 249 (594)
++.+++.++.. .+.......-++.|++ +..+|...+...+..|++ .+.+.++
T Consensus 216 ~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai------------------------- 269 (310)
T TIGR01272 216 FLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGI------------------------- 269 (310)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHH-------------------------
Confidence 66666554422 2222223355577887 778888888888877753 3445555
Q ss_pred ccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHH
Q psy16660 250 VFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATA 317 (594)
Q Consensus 250 ~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~ 317 (594)
. ....+|..++|.+.|.+.+..|.+..|++..+
T Consensus 270 ----------------------------------~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 270 ----------------------------------L-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVP 302 (310)
T ss_pred ----------------------------------H-HHHHhcchHHHHHHHHHHHhccchHHHHHHHH
Confidence 5 34568899999999999998999888875443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.7e-07 Score=96.44 Aligned_cols=158 Identities=16% Similarity=0.101 Sum_probs=108.0
Q ss_pred hhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhhhcc-----h-H--HH--
Q psy16660 118 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-----D-T--WW-- 187 (594)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~~~~-----~-~--~~-- 187 (594)
...-..+.++-+.+.... -++.....+...+..+.+..+.||+|||+.++++..+..+...++.. + . |.
T Consensus 290 ~~Yst~i~~~aG~~~~~a-~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y 368 (485)
T KOG0569|consen 290 FFYSTSIFKTAGFTPEEA-QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSY 368 (485)
T ss_pred HHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 333445566666555444 78888888889999999999999999999999988777666555221 1 1 11
Q ss_pred -HHHHHHHHHHH--hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhcc
Q psy16660 188 -FFAMISISGVF--AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVAD 264 (594)
Q Consensus 188 -l~~~r~l~Gi~--~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d 264 (594)
.+++.++..++ .|..|...-+.+|.+|++.|..+.++
T Consensus 369 ~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~---------------------------------------- 408 (485)
T KOG0569|consen 369 LCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSV---------------------------------------- 408 (485)
T ss_pred HHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHH----------------------------------------
Confidence 23344444443 45667888899999999999998887
Q ss_pred chhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCch
Q psy16660 265 VTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPE 336 (594)
Q Consensus 265 ~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~ 336 (594)
.....-+...+-...-..+.+.+|- ..|.+..+..++..++.++.+||++.+
T Consensus 409 -------------------~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr 460 (485)
T KOG0569|consen 409 -------------------ATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGR 460 (485)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence 4433333333333333334444565 677777888888888889999999754
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.6e-07 Score=99.57 Aligned_cols=123 Identities=22% Similarity=0.344 Sum_probs=98.7
Q ss_pred CcccCCchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHH
Q psy16660 92 SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV 171 (594)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~ 171 (594)
...+++.++.++...++..+++.. .....+++.++.-+.+... +.+..+..++..++.+++++++||+|+|+.+..+.
T Consensus 220 ~~~~nr~~~~l~~~~~~~~~~~~~-~~~~~~y~~~~vl~~~~~~-~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~ 297 (428)
T PF13347_consen 220 SLFRNRPFRILLLAFFLQWLAFAL-MNTFLPYYFTYVLGNEGLI-SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGL 297 (428)
T ss_pred hhcccchHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHhcCchhh-HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhH
Confidence 345567777777788888888777 6777788887766665544 88889999999999999999999999999999998
Q ss_pred HHhhhhhhh--hc--chHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccc
Q psy16660 172 FVTCLPIPL--MT--LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEH 216 (594)
Q Consensus 172 ~~~~i~~~~--~~--~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~ 216 (594)
++.+++..+ +. .+.+.+++..++.|++ +.......++++|..+.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~ 347 (428)
T PF13347_consen 298 LLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYD 347 (428)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhH
Confidence 888777665 33 3889999999999998 666667788888888744
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.7e-07 Score=92.10 Aligned_cols=177 Identities=16% Similarity=0.165 Sum_probs=131.4
Q ss_pred cCCchhHHHHHHHHHHHHhhhhhhhHHHHHHh-hCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHH
Q psy16660 95 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNR-TFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 173 (594)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~ 173 (594)
+++.+...++..++..-+... +...-..+.. +++.++.+. .++.....+..+++++++|++.||+|.|+++.+++++
T Consensus 250 ~~~~i~~FLiA~~~~~DGv~t-il~~~~~fg~~~~gls~~~l-ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi 327 (438)
T COG2270 250 GRKNLVLFLIARFFYIDGVNT-ILAMGGVFGAADLGLSSTEL-LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVI 327 (438)
T ss_pred cccchHHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHH
Confidence 334444444455554444444 4555556666 778777766 8888888999999999999999999999999988877
Q ss_pred hhhhhhh--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccc
Q psy16660 174 TCLPIPL--MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGV 250 (594)
Q Consensus 174 ~~i~~~~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 250 (594)
..+.++. +......+.+.-++.|.. ++.++.+-++..+.+|+++-++.+|+
T Consensus 328 ~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFgl-------------------------- 381 (438)
T COG2270 328 LSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGL-------------------------- 381 (438)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeeh--------------------------
Confidence 6666554 333444455566778887 88899999999999999999999999
Q ss_pred cchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHhhee
Q psy16660 251 FAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYS-LSLVVAVATAVAILDVFFILVA 329 (594)
Q Consensus 251 ~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~g-w~~~f~~~~~~~ll~~~~~~~~ 329 (594)
++...-.+..+||.+-+.+.+..| -|..+....++.++.+++ +..
T Consensus 382 ---------------------------------yaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~-L~~ 427 (438)
T COG2270 382 ---------------------------------YALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLL-LLR 427 (438)
T ss_pred ---------------------------------hhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhh-EEe
Confidence 999999999999999999887554 666666666666665544 444
Q ss_pred ccCC
Q psy16660 330 VPES 333 (594)
Q Consensus 330 l~e~ 333 (594)
+|++
T Consensus 428 v~~~ 431 (438)
T COG2270 428 VKVP 431 (438)
T ss_pred ecCC
Confidence 6654
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.5e-07 Score=99.25 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=108.2
Q ss_pred cCCchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHh
Q psy16660 95 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 174 (594)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~ 174 (594)
+++.+....+..++..++... .....|.+.++..+.+....++......++..++.+++++++||+|+|+++.++.++.
T Consensus 226 ~n~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~ 304 (448)
T PRK09848 226 RNRPLFMLCIGALCVLISTFA-VSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLG 304 (448)
T ss_pred CCchHHHHHHHHHHHHHHHHH-HhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 455565555556666555554 4455666666554445555344444456778889999999999999999999888777
Q ss_pred hhhhhhh--c--chHHHHHHHHHHHHHH-hHHHHHHHHHhhccccccc-------ccchhchhHHHHHHHHhhhhhhhHH
Q psy16660 175 CLPIPLM--T--LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHE-------RSLAYGLKFIALKIILMTLDTWWFF 242 (594)
Q Consensus 175 ~i~~~~~--~--~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~-------r~~~~g~~~~~~~~~~~~~~~~~~~ 242 (594)
.++.+++ . .+.+.+++..++.|+| +...+...+..+|..|+++ +|..+|.
T Consensus 305 ~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~------------------ 366 (448)
T PRK09848 305 TCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSL------------------ 366 (448)
T ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHH------------------
Confidence 6665552 2 2567777777888998 6677777888888887543 3555555
Q ss_pred HHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcCh
Q psy16660 243 AMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSL 308 (594)
Q Consensus 243 ~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw 308 (594)
.+....+|..+|+.+.+.+.+..|+
T Consensus 367 -----------------------------------------~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 367 -----------------------------------------FSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8888889999999998888766554
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-05 Score=82.41 Aligned_cols=311 Identities=13% Similarity=0.093 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhHHHHHHHHHhhcccc
Q psy16660 137 GLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISISGVFAVTFSVVFAYVADVTE 214 (594)
Q Consensus 137 g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l~Gi~~~~~~~~~a~i~~~~~ 214 (594)
|.+.-+-.+...+..+.+-+..+|...+.=+.+..++.+++.++ ++.+.++=+++-++.+++++..-+..--.+..++
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~ 141 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTHFYG 141 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHHhcC
Confidence 44455555666666677777888876433334444455556555 5568887778888888874433333222333444
Q ss_pred cccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHH
Q psy16660 215 EHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVF 294 (594)
Q Consensus 215 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~i 294 (594)
+. ..+- ++.+.+.+.++
T Consensus 142 ~~----~l~~-----------------------------------------------------------wssGTG~aGl~ 158 (402)
T PF02487_consen 142 KS----SLSA-----------------------------------------------------------WSSGTGGAGLV 158 (402)
T ss_pred cc----cccc-----------------------------------------------------------ccCCcChhhHH
Confidence 32 2333 77888888888
Q ss_pred HHHHHHHHHH-hcChHHHHHHHHHHHHHHHHHhheeccCCCchhhccC--CCCCC-------CCccc--cCCchhhHhh-
Q psy16660 295 SPALGAYLEK-TYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQA--SWGGA-------PISWE--QADPFASLRK- 361 (594)
Q Consensus 295 gp~l~~~l~~-~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~--~~~~~-------~~~~~--~~~~~~~~~~- 361 (594)
|+..--.+.+ ..+.|..+.+...+.++..+..++.+|.++..+..+. ..++. +.+.. .......+++
T Consensus 159 Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 238 (402)
T PF02487_consen 159 GALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDEAEDDLLESETSESKPDSSSKLSFKEK 238 (402)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCCcccccccccccccccccccchhhHHHH
Confidence 8876655555 2345777777776666555444555654332211110 00000 00000 0001111111
Q ss_pred hccchhHHHHHHHHHHHHHhhhhHHH-HHHHHH-HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q psy16660 362 VGKDQTILMLCVTVFLSYLPEAGQYS-CLFVYL-KLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGL 439 (594)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~ 439 (594)
..+-|.+...++-.++.++.++.++. ..+... .....-...+..++...+.+|..+++--...+ |+ |++.+...
T Consensus 239 ~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~ 314 (402)
T PF02487_consen 239 LKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSL 314 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHH
Confidence 11122233233334444444444332 222221 12122223455666667777666655443322 33 33322222
Q ss_pred HHHH-----HHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16660 440 VFEM-----LQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLI 513 (594)
Q Consensus 440 ~~~~-----i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l 513 (594)
+-.. +.-.++-+.++.|...+..+..|+. |..+.-....+.+..|+++|--++|.......+|..++..++-.+
T Consensus 315 LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 315 LQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2111 1112233456778777777778876 788888888888889999999999999999999998888776554
Q ss_pred H
Q psy16660 514 F 514 (594)
Q Consensus 514 ~ 514 (594)
-
T Consensus 395 e 395 (402)
T PF02487_consen 395 E 395 (402)
T ss_pred H
Confidence 3
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.2e-07 Score=97.76 Aligned_cols=158 Identities=11% Similarity=0.083 Sum_probs=103.3
Q ss_pred cCCchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHh
Q psy16660 95 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 174 (594)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~ 174 (594)
+++.++.++...++...+... .....+++.++...... ..+.+.....+...++.+++++++||+|+|+.+..+.++.
T Consensus 227 ~n~~~~~l~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~-~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~ 304 (444)
T PRK09669 227 GNSQWRIMFIFNVVLLTAVVT-RGGATLYYVNYVLLRPD-LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAF 304 (444)
T ss_pred CCchHHHHHHHHHHHHHHHHH-HhhhhheeeeeecCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 455555555555555555544 34444555554444333 3366666777888889999999999999999988776654
Q ss_pred hhhhh-h--h-cchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccc--cchhchhHHHHHHHHhhhhhhhHHHHhhh
Q psy16660 175 CLPIP-L--M-TLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHER--SLAYGLKFIALKIILMTLDTWWFFAMISI 247 (594)
Q Consensus 175 ~i~~~-~--~-~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 247 (594)
++... . . ..+.+.+++..++.|++ +...+...++++|..+.+|. |+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~------------------------- 359 (444)
T PRK09669 305 VILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRL------------------------- 359 (444)
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCc-------------------------
Confidence 43222 2 2 23677777888889998 66667778888888873332 2110
Q ss_pred ccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcCh
Q psy16660 248 SGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSL 308 (594)
Q Consensus 248 ~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw 308 (594)
.+..+|. .+....+|..+|+.+++++.+..|+
T Consensus 360 -----------------------~g~~~s~------~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 360 -----------------------DGLVFST------NLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred -----------------------chHHHHH------HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 0111122 7777889999999999998877666
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-06 Score=95.45 Aligned_cols=148 Identities=16% Similarity=0.111 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh----hch-HHHHHHHHHHHHHH
Q psy16660 371 LCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNV----LGA-KHTIIIGLVFEMLQ 445 (594)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr----~g~-~~~l~~~~~~~~i~ 445 (594)
..+..+...+.......+++.|+.+++|.++..+|.++.+.-+...+..++.|.++|| +|| |+.+..+.+..+++
T Consensus 11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~ 90 (473)
T PRK10429 11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVV 90 (473)
T ss_pred hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHH
Confidence 3344444455566677788899999999999999999999999999999999999994 587 56666777777777
Q ss_pred HHHHhhhh----h--HHHHHHHHHHHHHh-hchHhHHHHHHhhcC-CCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy16660 446 LMWYGFGS----Q--MWMMWAAGILASLA-SITYPAISALVSMHS-DADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMF 517 (594)
Q Consensus 446 ~~~~~~~~----~--~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~ 517 (594)
+.++...+ + .+...+..+++.++ ........++..+.. ++++|.+..+.-....++|+.+.+.+...+.+..
T Consensus 91 ~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~ 170 (473)
T PRK10429 91 LFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYV 170 (473)
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65554322 1 12233333445555 666677788888887 5789999999878888888787777766665554
Q ss_pred h
Q psy16660 518 H 518 (594)
Q Consensus 518 g 518 (594)
|
T Consensus 171 g 171 (473)
T PRK10429 171 G 171 (473)
T ss_pred C
Confidence 4
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-06 Score=85.58 Aligned_cols=171 Identities=16% Similarity=0.284 Sum_probs=118.8
Q ss_pred CCchhHHHHHHHHHHHHhhhhhhhHHHH-HHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHH-HH
Q psy16660 96 EPSVYHALVVIFLEFFAWGLLTMPIISV-LNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV-FV 173 (594)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~-~~ 173 (594)
.+.+|.+.+.++....++.- ....-|. +.+.++.++... +-+.+......++.+|+.|.++||+|++...+.+. +.
T Consensus 263 ~ppfw~~~iicv~yyva~fP-Fi~lg~~fF~~rfGlS~~~a-~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~ 340 (459)
T KOG4686|consen 263 YPPFWVLVIICVLYYVAWFP-FITLGPMFFQKRFGLSAVSA-GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACIL 340 (459)
T ss_pred CccHHHHHHHHHHHHHHHHH-HhhhhHHHHHHhhCCChhhc-cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHH
Confidence 45567777666666665433 2222333 455666665554 88888888999999999999999999998766554 44
Q ss_pred hhhhhhhhcchHHHHHHHHHHHHHHhHHHH-HHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccc
Q psy16660 174 TCLPIPLMTLDTWWFFAMISISGVFAVTFS-VVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFA 252 (594)
Q Consensus 174 ~~i~~~~~~~~~~~l~~~r~l~Gi~~~~~~-~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 252 (594)
..++-.....+.+.=..+..+.|+...+.. ...-.++...|+++.|.++|.
T Consensus 341 tl~~H~~l~Ft~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf---------------------------- 392 (459)
T KOG4686|consen 341 TLLGHSGLFFTFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGF---------------------------- 392 (459)
T ss_pred HHHHhhhHHhhhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHH----------------------------
Confidence 555544455555555667778888644333 356778888888999999999
Q ss_pred hhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcC---hH-HHHHHHHHHHHHHHHHhh
Q psy16660 253 VTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYS---LS-LVVAVATAVAILDVFFIL 327 (594)
Q Consensus 253 ~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~g---w~-~~f~~~~~~~ll~~~~~~ 327 (594)
.+...++|..+-|+++|.+.++-| |- .-|...+.+++....+++
T Consensus 393 -------------------------------~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~ 440 (459)
T KOG4686|consen 393 -------------------------------IQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILF 440 (459)
T ss_pred -------------------------------HHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987544 33 334444455555444433
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.3e-07 Score=98.06 Aligned_cols=111 Identities=13% Similarity=0.179 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhh
Q psy16660 403 HVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSM 481 (594)
Q Consensus 403 ~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~ 481 (594)
+.+++.+...+++.++.++.|+++|++|||+.++.+.++..++.++.+.+++.+.+.++-++.|+| +........+++|
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE 169 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE 169 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence 448999999999999999999999999999999999999999999999999999999999999999 8888888999999
Q ss_pred cCCCccchHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16660 482 HSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIF 514 (594)
Q Consensus 482 ~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~ 514 (594)
..|++.||...+..+....+|..++ .+.+...
T Consensus 170 iap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~ 201 (513)
T KOG0254|consen 170 IAPAHIRGTLVSLYQLFITIGILLG-YCINYGT 201 (513)
T ss_pred cCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhh
Confidence 9999999999999999998888777 4444443
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.9e-07 Score=98.43 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=111.1
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHh
Q psy16660 395 LVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYP 473 (594)
Q Consensus 395 ~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~ 473 (594)
+.++.+.....+..+.+.++.++|.++.|.++||+|||++++.++++..++.++.+++++.+.+.+.-++.|++ +....
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 34466777888899999999999999999999999999999999999999999999999999999999999999 88889
Q ss_pred HHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16660 474 AISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFY 515 (594)
Q Consensus 474 ~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~ 515 (594)
....+..|.+++++|+.+..+ ......++.+++...+++..
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~ 231 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR 231 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999 88888999999999999887
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.8e-06 Score=82.99 Aligned_cols=349 Identities=13% Similarity=0.099 Sum_probs=193.5
Q ss_pred CCchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhc-----ccCchhhHH--
Q psy16660 96 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSD-----LWGRKLFLL-- 168 (594)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsD-----r~Grr~~l~-- 168 (594)
+++++.+.+.-.+..+-.|+ .. .+|.+.+.-+.+-..+ +.. +..+.. ...-++|.++.| |+||||..+
T Consensus 30 ~~~illLl~LYllQGiP~GL-~~-~iP~lL~ak~vSyt~~-a~f-S~ay~P-~sLKllWaPiVDs~y~k~~GrrksWvvp 104 (510)
T KOG3574|consen 30 RSSILLLLFLYLLQGIPLGL-IG-AIPLLLQAKGVSYTSQ-AIF-SFAYWP-FSLKLLWAPIVDSVYSKRFGRRKSWVVP 104 (510)
T ss_pred hhhHHHHHHHHHHcCCchhH-hh-hhHHHhcCCCcchhhh-hhh-hhhhhH-HHHHHHHHhhhHHHHHHhhccccceeee
Confidence 45666666666666666676 44 8888888655554434 322 222222 334788999999 999998633
Q ss_pred ----HHHHHhhhhhhh---hc-----chHHHHHHHHHHHHHHhHHHH-HHHHHhhcccccccccchhchhHHHHHHHHhh
Q psy16660 169 ----ITVFVTCLPIPL---MT-----LDTWWFFAMISISGVFAVTFS-VVFAYVADVTEEHERSLAYGLKFIALKIILMT 235 (594)
Q Consensus 169 ----~~~~~~~i~~~~---~~-----~~~~~l~~~r~l~Gi~~~~~~-~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~ 235 (594)
+|..+..++... .. ++...+....++.-+.+++.- +...+.-.+..+++-|.+
T Consensus 105 ~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgya-------------- 170 (510)
T KOG3574|consen 105 CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYA-------------- 170 (510)
T ss_pred hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCch--------------
Confidence 333333333222 11 122222223344444444333 335555566666665554
Q ss_pred hhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHH----H-------
Q psy16660 236 LDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLE----K------- 304 (594)
Q Consensus 236 ~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~----~------- 304 (594)
+.+..+|.-.|..++..+. .
T Consensus 171 -------------------------------------------------ST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y 201 (510)
T KOG3574|consen 171 -------------------------------------------------STCQSVGQTAGYFLGNVVFLALESPDFCNTY 201 (510)
T ss_pred -------------------------------------------------hHHHHHHHhhhHHhhcceeeEecChhhhhHH
Confidence 4444455555554443321 0
Q ss_pred hcCh---------HHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHH
Q psy16660 305 TYSL---------SLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTV 375 (594)
Q Consensus 305 ~~gw---------~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (594)
..+| ....++.+...++...+..+.-+|.+.+..++ .+...++..+-++++++-|....++...
T Consensus 202 ~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e-------~~~~i~~~yk~l~~vLklk~v~~la~i~ 274 (510)
T KOG3574|consen 202 LRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEE-------LELGIHESYKLLRDVLKLKSVRWLAGIL 274 (510)
T ss_pred HhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhh-------hhcCHHHHHHHHHHHHcCccHHHHHHHH
Confidence 0011 12344445455554444444333333221111 0111223345567777888888888888
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc------hHHHHHHHHHHHHHHHHHH
Q psy16660 376 FLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLG------AKHTIIIGLVFEMLQLMWY 449 (594)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g------~~~~l~~~~~~~~i~~~~~ 449 (594)
...-+.+++.....++-+.+ .|.+..+.++......-..++.....|++..... ++....++.......+..+
T Consensus 275 lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~ 353 (510)
T KOG3574|consen 275 LTGKLGFQAADALTSLKLLE-HGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWW 353 (510)
T ss_pred HHHHHHhhhhhhccchHHHH-cCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhh
Confidence 88888888888788877777 5999988887664444444555555554443211 1112222222222222221
Q ss_pred h-h-hh-------hHHH-HHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy16660 450 G-F-GS-------QMWM-MWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 450 ~-~-~~-------~~~~-~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g 518 (594)
. . .+ .... .+....+.+.. ...+....+..++..||...|+.+.+.++..++|+-.=..+...+.|.++
T Consensus 354 ~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 354 TPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred hcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 1 1 11 1111 12222333333 44556677888999999999999999999999999998999999999877
Q ss_pred cc
Q psy16660 519 VD 520 (594)
Q Consensus 519 ~~ 520 (594)
..
T Consensus 434 v~ 435 (510)
T KOG3574|consen 434 VK 435 (510)
T ss_pred ee
Confidence 54
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.8e-06 Score=91.61 Aligned_cols=172 Identities=12% Similarity=0.060 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----hHHHHHHHHHHH-H
Q psy16660 370 MLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLG-----AKHTIIIGLVFE-M 443 (594)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g-----~~~~l~~~~~~~-~ 443 (594)
.+...++...+. ......++.++++.+|.+..+.+.+.+...+...+-.+ .|.++||++ ||+.+.++.++. .
T Consensus 30 ~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~ 107 (468)
T TIGR00788 30 IGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSA 107 (468)
T ss_pred HHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHH
Confidence 334445555665 66666777888888999999999998888888887555 999999996 677777776665 3
Q ss_pred HHHHHHhhhhhHH-HHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchH---HHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy16660 444 LQLMWYGFGSQMW-MMWAAGILASLA-SITYPAISALVSMHSDADRQGL---VQGMVTGMRGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 444 i~~~~~~~~~~~~-~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~---~~g~~~~~~~lg~~lg~~~~g~l~~~~g 518 (594)
+++..+...++.. ...+..++.+++ +........+..|..+ ++++. ..++.....++|..+++.+.|.+.+..+
T Consensus 108 ~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~ 186 (468)
T TIGR00788 108 ILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTL 186 (468)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444333432 333355667777 6677888999999887 44443 3444455566899999999999998876
Q ss_pred ccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhccCcc
Q psy16660 519 VDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIPESI 572 (594)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 572 (594)
++ ..|.+.+++.++..+...+++|++
T Consensus 187 ~~----------------------------~~f~~~a~l~ll~~~~~~~~~E~~ 212 (468)
T TIGR00788 187 TR----------------------------ILFLITAALLLLQLFVSNLSKERR 212 (468)
T ss_pred cc----------------------------hHHHHHHHHHHHHHHHHHhccccc
Confidence 55 677777666666666566677653
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.3e-05 Score=80.19 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=109.8
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhH
Q psy16660 396 VMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPA 474 (594)
Q Consensus 396 ~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~ 474 (594)
.+|++..+++.++......+++.+.+.|.+.||+|||+..+..+++..++++.. ..++.+.++++-++.|++ ...++.
T Consensus 63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~~~~~~~L~~GRvlgGiaTSLLfS~ 141 (354)
T PF05631_consen 63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-HSSNYPVLLLGRVLGGIATSLLFSA 141 (354)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999888654 446788899999999998 777776
Q ss_pred HHHHH-hhc----CCCccchHHHHHHHHH-HHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCC
Q psy16660 475 ISALV-SMH----SDADRQGLVQGMVTGM-RGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPG 548 (594)
Q Consensus 475 ~~~~~-~~~----~p~~~~g~~~g~~~~~-~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (594)
.-++. .|+ +|++..+...+..++. ..+-.+++..+...+.+..|. ++.
T Consensus 142 FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~--------------------------g~v 195 (354)
T PF05631_consen 142 FESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGF--------------------------GPV 195 (354)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC--------------------------CCc
Confidence 65543 333 4555556666655533 334455556666666776654 244
Q ss_pred hhHHHHHHHHHHHHHHHHhcc
Q psy16660 549 PPFVFGALLVIAALLVATFIP 569 (594)
Q Consensus 549 ~~f~~~~~~~~~~~~~~~~~~ 569 (594)
.+|..+..+++++.++....+
T Consensus 196 aPF~~a~~~l~~~~~~I~~~W 216 (354)
T PF05631_consen 196 APFDAAIVLLAVAAVLILKTW 216 (354)
T ss_pred chHHHHHHHHHHHHHHHHhcc
Confidence 789988888887777665433
|
|
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.2e-06 Score=83.96 Aligned_cols=347 Identities=12% Similarity=0.061 Sum_probs=211.5
Q ss_pred HHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhh--hhhhcchHHHHHHHHHHHHHHhHHHHHHHHHhhcccccccccch
Q psy16660 144 GFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLP--IPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLA 221 (594)
Q Consensus 144 ~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~--~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~a~i~~~~~~~~r~~~ 221 (594)
.-.+.+.-.+.=.+.|..-.|+++++-.+..... .+.+..+.+.+=+.-++.|...+.-.+.++++-...+++++.++
T Consensus 52 TYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrv 131 (433)
T KOG3810|consen 52 TYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRV 131 (433)
T ss_pred hHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHH
Confidence 3344455555556889888888866543333222 22367788888888888888877777888999999999999998
Q ss_pred hchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHH
Q psy16660 222 YGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAY 301 (594)
Q Consensus 222 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~ 301 (594)
.|. ..++.-.|...|..++..
T Consensus 132 t~y-----------------------------------------------------------~RaA~L~g~~~g~vlaQl 152 (433)
T KOG3810|consen 132 TGY-----------------------------------------------------------CRAAFLVGKFVGSVLAQL 152 (433)
T ss_pred HHH-----------------------------------------------------------hHHHHHHHhHHHhHHHHH
Confidence 888 777777888888877777
Q ss_pred HHHh--cChHHHHHHHHHHHHHHHHHhheeccCCCchhhc--cCC---C--CCCCCcccc-CC--------chhhHhhhc
Q psy16660 302 LEKT--YSLSLVVAVATAVAILDVFFILVAVPESLPEKVR--QAS---W--GGAPISWEQ-AD--------PFASLRKVG 363 (594)
Q Consensus 302 l~~~--~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~--~~~---~--~~~~~~~~~-~~--------~~~~~~~~~ 363 (594)
+... .++...=.+......++..+ ..++|..++...- ..+ . .++...+.+ .+ ...++....
T Consensus 153 Lvs~~~~sy~~LN~ISL~~~~ia~~~-A~fLP~v~rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y 231 (433)
T KOG3810|consen 153 LVSLETLSYTTLNYISLAEVTIAVLL-ALFLPRVKRSLYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECY 231 (433)
T ss_pred HhhhcccchhhhchhhHHHHHHHHHH-HhhCCCCchhhhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHh
Confidence 7653 23333333333333333333 3346665532110 000 0 000000000 01 123455667
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHH
Q psy16660 364 KDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVM-GFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAK--HTIIIGLV 440 (594)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~--~~l~~~~~ 440 (594)
+||.++...+-..+....+....++....-++.- +-...-.|..-+...+.++++.+..|.+.-++.|. .++.++.+
T Consensus 232 ~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~ 311 (433)
T KOG3810|consen 232 SNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSA 311 (433)
T ss_pred cCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHH
Confidence 8888777766666666666666555555555431 11112235555666667777788888876555443 35555666
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Q psy16660 441 FEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHV 519 (594)
Q Consensus 441 ~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~ 519 (594)
..+...+++...++.|..+++.+++... ....+.....+++....+.-|...|+++++.-+-+.+-.. .+.|..|.
T Consensus 312 ~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~---iVvd~~g~ 388 (433)
T KOG3810|consen 312 VQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILTL---IVVDDRGL 388 (433)
T ss_pred HhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheE---EEEccccc
Confidence 6677777788888999999999988877 7777778888888888899999999988766554443322 22343332
Q ss_pred cCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhccC
Q psy16660 520 DLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIPE 570 (594)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 570 (594)
.. +.+....-+...|++.+++.++...+.....+
T Consensus 389 ~L-----------------~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~ 422 (433)
T KOG3810|consen 389 GL-----------------DIRTQFVVYSSYFIVLGVIFLIGFGIEYLMCR 422 (433)
T ss_pred CC-----------------CcceeEEEEeehHHHHHHHHHHHHHHHHHHhh
Confidence 21 11122233445677777777777665444433
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=95.67 Aligned_cols=151 Identities=17% Similarity=0.333 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHhhhhHHH---HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q psy16660 369 LMLCVTVFLSYLPEAGQYS---CLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQ 445 (594)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~ 445 (594)
|..++..++..+...+... .+...+++.++.+..+++++.++......+..++.+.+.||+|.|.+.+.|.++..++
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g 124 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALG 124 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHH
Confidence 4444444444433333322 3344556668888888999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHH-HHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 446 LMWYGFGSQMWMMWAA-GILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 446 ~~~~~~~~~~~~~~~~-~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
+++-.+.++.|.+++. .++.|+| ++.+......+...+ +++|+.+.|+......+|.++-|.+...+.+..|++
T Consensus 125 ~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r 200 (509)
T KOG2504|consen 125 LLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWR 200 (509)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcH
Confidence 9999999999887654 5567888 787777777777666 789999999999999999999999999999999876
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.4e-06 Score=81.73 Aligned_cols=126 Identities=17% Similarity=0.227 Sum_probs=96.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh-------hhHHHHHH
Q psy16660 388 CLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFG-------SQMWMMWA 460 (594)
Q Consensus 388 ~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~-------~~~~~~~~ 460 (594)
.+...+++.+|+|..|...+-....++.-+ +++.|.+.|++|++.++.+|.+...++..++... .+.|.+.+
T Consensus 23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~ 101 (250)
T PF06813_consen 23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCL 101 (250)
T ss_pred hhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHH
Confidence 334556778999999999999888888876 5888999999999999999999999988776542 34566666
Q ss_pred HHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16660 461 AGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFY 515 (594)
Q Consensus 461 ~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~ 515 (594)
..++.+.+ ............+++| ++||++.|+.-....+++++-..+...+++
T Consensus 102 ~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 102 FLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred HHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 66665565 4444554444557886 589999999999999888887777666654
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.8e-06 Score=82.66 Aligned_cols=157 Identities=23% Similarity=0.293 Sum_probs=115.1
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhCCCchh-HHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--h
Q psy16660 105 VIFLEFFAWGLLTMPIISVLNRTFPDHTF-LMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--M 181 (594)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~ 181 (594)
..+...+..+. ..+..+.+..+.+.... ...++..+.+.++..++.++.|.++||+|||+.+..+.....++... +
T Consensus 10 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 88 (338)
T COG0477 10 AALLLGLDLGL-LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLAL 88 (338)
T ss_pred HHHHHHHhcch-HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHh
Confidence 33444455454 67778888888776653 34499999999999999999999999999998887776543333222 3
Q ss_pred cc--hHHHHHHHHHHHHHH-hHHHHHHHHHhhccccc-ccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhh
Q psy16660 182 TL--DTWWFFAMISISGVF-AVTFSVVFAYVADVTEE-HERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSV 257 (594)
Q Consensus 182 ~~--~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~-~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 257 (594)
.. +.+.+++.|+++|++ +...+...+++.|..|+ ++|+...+.
T Consensus 89 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 135 (338)
T COG0477 89 APNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGL--------------------------------- 135 (338)
T ss_pred CccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHH---------------------------------
Confidence 33 488999999999998 56778889999999987 567777766
Q ss_pred hhhhhccchhhhhhhhhhcccccccchhH-HHhhHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHH
Q psy16660 258 VFAYVADVTEEHERSLAYGLSFSFSQVSA-TFAASMVFSPALGAYLEKT--YSLSLVVAVATAVAIL 321 (594)
Q Consensus 258 ~~a~i~d~t~~~~r~~~~g~~~~~~~~~~-~~~~g~~igp~l~~~l~~~--~gw~~~f~~~~~~~ll 321 (594)
... ...+|..++|.+++.+... .+|+..|.........
T Consensus 136 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 136 --------------------------VTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL 176 (338)
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 555 5677888888777776653 5799877666655443
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.4e-06 Score=91.58 Aligned_cols=157 Identities=15% Similarity=0.077 Sum_probs=125.6
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHh
Q psy16660 395 LVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYP 473 (594)
Q Consensus 395 ~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~ 473 (594)
+..+....+.+.+.+++.++.+++.+..+.+.||++..+.+....++..+..++....++.+.+++.-++.|+. +..+|
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP 153 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWP 153 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccch
Confidence 33456677889999999999999999999999999966666655555554444444578899999999999999 99999
Q ss_pred HHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHH
Q psy16660 474 AISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVF 553 (594)
Q Consensus 474 ~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 553 (594)
....++...+.+++||..+|+.....++|+++|+.+...+.+..|.. ...++++.|++
T Consensus 154 ~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~----------------------~~~gW~~~FiI 211 (495)
T KOG2533|consen 154 GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG----------------------GLAGWRWLFII 211 (495)
T ss_pred HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC----------------------CcCCceeehhH
Confidence 99999999999999999999999999999999999999887744422 34667889988
Q ss_pred HHHHHHH-HHHHHHhccCccc
Q psy16660 554 GALLVIA-ALLVATFIPESIV 573 (594)
Q Consensus 554 ~~~~~~~-~~~~~~~~~~~~~ 573 (594)
.+++.++ ++++.+++|..+.
T Consensus 212 ~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 212 EGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred HHHHHHHHHheEEEEecCChh
Confidence 7766655 4455556665443
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=6e-07 Score=94.97 Aligned_cols=166 Identities=11% Similarity=0.155 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhh
Q psy16660 100 YHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIP 179 (594)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~ 179 (594)
...++..++..++.++ +..++=...++.+..+... |........+-.+.-++.+++.+|+|+-+++.+++.+..+=.+
T Consensus 374 llff~~av~mG~g~~l-v~tFLfWHled~~~~~~Lf-Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~ 451 (618)
T KOG3762|consen 374 LLFFFVAVVMGAGVGL-VFTFLFWHLEDLGGIKTLF-GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFL 451 (618)
T ss_pred EehhHHHHHHHHHHHH-HHHHHHHHHhhcCCcceee-eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHH
Confidence 3344555555666666 5666666788888776666 8888888888888999999999999999999999888877766
Q ss_pred h--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhh
Q psy16660 180 L--MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFS 256 (594)
Q Consensus 180 ~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 256 (594)
. +..|.|+.+...+++|+. +..+....+|+++..||+-|..+.++
T Consensus 452 ~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l-------------------------------- 499 (618)
T KOG3762|consen 452 YYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGL-------------------------------- 499 (618)
T ss_pred HHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHH--------------------------------
Confidence 6 455999999999999997 88999999999999999999999888
Q ss_pred hhhhhhccchhhhhhhhhhcccccccchhH-HHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHh
Q psy16660 257 VVFAYVADVTEEHERSLAYGLSFSFSQVSA-TFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFI 326 (594)
Q Consensus 257 ~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~-~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~ 326 (594)
++. ..++|--+|.++||.+.+.+|-|..|+..++.+++.+++.
T Consensus 500 ---------------------------~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 500 ---------------------------LQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALF 543 (618)
T ss_pred ---------------------------HHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHH
Confidence 444 4678999999999999999999999999887777755543
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.8e-05 Score=75.08 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=79.4
Q ss_pred hhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhhhc---------chHHHH
Q psy16660 118 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT---------LDTWWF 188 (594)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~~~---------~~~~~l 188 (594)
...-|.+.+.++.+..+. ..+.....+|..+ +++.|.+.|++|++.++.+|.+...+|..++. .++|.+
T Consensus 22 s~yS~~Lk~~l~~sq~~l-~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~ 99 (250)
T PF06813_consen 22 SAYSPQLKSRLGYSQSQL-NTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLM 99 (250)
T ss_pred hhhhHHHHHHhCCCHHHH-HHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHH
Confidence 334456667777776666 8888888999876 58999999999999999999888888766521 267788
Q ss_pred HHHHHHHHHHh-HHHHHHHHHhhcccccccccchhch
Q psy16660 189 FAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGL 224 (594)
Q Consensus 189 ~~~r~l~Gi~~-~~~~~~~a~i~~~~~~~~r~~~~g~ 224 (594)
.+..++.|.+. ...........+.+| ++||.+.|+
T Consensus 100 ~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgi 135 (250)
T PF06813_consen 100 CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGI 135 (250)
T ss_pred HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehh
Confidence 77777777774 344565666668887 589999999
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.5e-05 Score=84.61 Aligned_cols=150 Identities=14% Similarity=0.126 Sum_probs=100.9
Q ss_pred HHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcc-cCchhhHHHHHHHhhhhhhhhcch----------HHHHH
Q psy16660 121 ISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL-WGRKLFLLITVFVTCLPIPLMTLD----------TWWFF 189 (594)
Q Consensus 121 ~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr-~Grr~~l~~~~~~~~i~~~~~~~~----------~~~l~ 189 (594)
.-.+.+.++.++... ..+...+....-+...+.|+++|+ +||++.++++.++..++..+++.+ ....+
T Consensus 11 vlYl~~~lg~~~~~A-~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l 89 (654)
T TIGR00926 11 VLYFLNFLGFSESTS-TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDL 89 (654)
T ss_pred HHHHHHHcCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHH
Confidence 333344555555544 566667777777788999999997 799999998888877776663321 12344
Q ss_pred HHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhh
Q psy16660 190 AMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEE 268 (594)
Q Consensus 190 ~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~ 268 (594)
++-.+..+| ++.-+...+...|.++++++.+..+. ++|
T Consensus 90 ~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~-------------F~~---------------------------- 128 (654)
T TIGR00926 90 LGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRF-------------FSF---------------------------- 128 (654)
T ss_pred HHHHHHHhhccccccCchhhhHhhcCccchhHHHHH-------------HHH----------------------------
Confidence 555566666 55667778888888876544322222 111
Q ss_pred hhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhc-------ChHHHHHHHHHHHHHHHHHhh
Q psy16660 269 HERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTY-------SLSLVVAVATAVAILDVFFIL 327 (594)
Q Consensus 269 ~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~-------gw~~~f~~~~~~~ll~~~~~~ 327 (594)
+-.+.++|..+++.+..++.+.. +|...|.+.++..++++++..
T Consensus 129 ---------------fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 129 ---------------FYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM 179 (654)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 66667788888888888876443 699999998888777666544
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.9e-05 Score=78.96 Aligned_cols=123 Identities=12% Similarity=0.159 Sum_probs=110.9
Q ss_pred HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hch
Q psy16660 393 LKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SIT 471 (594)
Q Consensus 393 ~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~ 471 (594)
.++.+|.+...+|++.+...++.-..+++.+++.+|+|.++.+..++++.+++.++=... +.+.++.+..+.|.+ +..
T Consensus 38 Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~ 116 (395)
T COG2807 38 IRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVI 116 (395)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHH
Confidence 344579999999999999999999999999999999999999999999999998876655 677888889999999 889
Q ss_pred HhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy16660 472 YPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMF 517 (594)
Q Consensus 472 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~ 517 (594)
+....+.+-+.+| ++.+..+|+++...++++++++.+.-.+.++.
T Consensus 117 nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~ 161 (395)
T COG2807 117 NVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS 161 (395)
T ss_pred HHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 9999999999995 67799999999999999999999999998876
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.1e-05 Score=85.67 Aligned_cols=146 Identities=11% Similarity=0.035 Sum_probs=107.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh----chH-HHHHHHHHHHHHHHH
Q psy16660 373 VTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVL----GAK-HTIIIGLVFEMLQLM 447 (594)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~----g~~-~~l~~~~~~~~i~~~ 447 (594)
+..+...........++..|..+..|+++..+|.++.+.-+.-.+.-++.|.++||. ||| +.+.++.+..++++.
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ 95 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV 95 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence 333344455556667888888899999999999999999999999999999999974 664 455566666666665
Q ss_pred HHhhhhh------HHHHHHHHHHHHHh-hchHhHHHHHHhhcCC-CccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy16660 448 WYGFGSQ------MWMMWAAGILASLA-SITYPAISALVSMHSD-ADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 448 ~~~~~~~------~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g 518 (594)
++...++ .....+..+++..+ .+......++..+..+ +++|++..+......++|..+++.+...+.+..|
T Consensus 96 llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g 174 (460)
T PRK11462 96 LAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIG 174 (460)
T ss_pred HHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5543331 22233344455555 5666666777777765 6899999999999999999999888877776655
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.27 E-value=4e-05 Score=86.27 Aligned_cols=166 Identities=16% Similarity=0.089 Sum_probs=125.9
Q ss_pred hhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHhhhh-------
Q psy16660 382 EAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVL-GAKHTIIIGLVFEMLQLMWYGFGS------- 453 (594)
Q Consensus 382 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~i~~~~~~~~~------- 453 (594)
++++...+..|+.+.+|++...+..++..+....-+..+++|++.|++ |+++.+.++.++..+++.++.+..
T Consensus 3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~ 82 (654)
T TIGR00926 3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHP 82 (654)
T ss_pred eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence 456667778888888999998888888877777778899999999975 999999999999999988876532
Q ss_pred -hHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCc---cchHHHHHHHHHHHHHHhHHHHHHHHHHHHhh-ccCCCCCCC
Q psy16660 454 -QMWMMWAAGILASLA-SITYPAISALVSMHSDAD---RQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH-VDLSDGPDV 527 (594)
Q Consensus 454 -~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~---~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g-~~~~~~~~~ 527 (594)
.....+.++.+..+| +.+-|...+...+.++++ ++-....++....++|+.+++.+.+++.+..+ +.
T Consensus 83 ~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg------- 155 (654)
T TIGR00926 83 LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFG------- 155 (654)
T ss_pred hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------
Confidence 123355667777777 788899999998888754 35667888888899999999999998875532 11
Q ss_pred CCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhcc
Q psy16660 528 GPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIP 569 (594)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 569 (594)
...++...|.+.++++++++++....+
T Consensus 156 ---------------~~~~~~~aF~i~~i~m~ia~lvf~~g~ 182 (654)
T TIGR00926 156 ---------------CQDCYPLAFGVPAILMILALIVFMAGS 182 (654)
T ss_pred ---------------cCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 012344678888888887777765543
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0027 Score=69.02 Aligned_cols=173 Identities=14% Similarity=0.167 Sum_probs=102.9
Q ss_pred hhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHH---------hcChHHHHH-HHHHHHHHH--HHHh
Q psy16660 259 FAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEK---------TYSLSLVVA-VATAVAILD--VFFI 326 (594)
Q Consensus 259 ~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~---------~~gw~~~f~-~~~~~~ll~--~~~~ 326 (594)
.++.+|.++.+|-.|-+++ ++.+.++|.+++..+..++.+ ...|...+. +.++..+.+ .+..
T Consensus 166 W~fAN~itt~~eAKRfYpl------~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~ 239 (491)
T PF03219_consen 166 WGFANEITTVEEAKRFYPL------FGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILL 239 (491)
T ss_pred HHHHHhcCCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888 898888888888888777776 123443332 111111111 1111
Q ss_pred heeccCCCchhhcc-CCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhH--
Q psy16660 327 LVAVPESLPEKVRQ-ASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVH-- 403 (594)
Q Consensus 327 ~~~l~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-- 403 (594)
...+.+....+++. .+...++.+.++....++++.++++|.+..+++...++..........+-..+++.+. ++.+
T Consensus 240 ~~~~~~~vl~~~~~~~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~-~~~~ys 318 (491)
T PF03219_consen 240 YRYMNKNVLTDPRFYPSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYP-DPNDYS 318 (491)
T ss_pred HHHHHHHccCccccchhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CchHHH
Confidence 22222111110000 0000011122334455778888899999988888888877777776666666666553 3333
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q psy16660 404 --VAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIG 438 (594)
Q Consensus 404 --~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~ 438 (594)
.|.+....++..++..++.+.+.+|+|-+....+.
T Consensus 319 afmG~~~~~tGivtii~~~l~~~iir~~GW~~~Alit 355 (491)
T PF03219_consen 319 AFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALIT 355 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 35556667777777778889999999876555443
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.6e-05 Score=82.28 Aligned_cols=149 Identities=17% Similarity=0.202 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHH
Q psy16660 366 QTILMLCVTVFLSYLPEAGQYSCLFVYLKL-VMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGA-KHTIIIGLVFEM 443 (594)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~-~~~l~~~~~~~~ 443 (594)
|.++...+..++............-.|+++ ..+.+.+..|+..+...++.++..++.|+...|.+. |+.++.+.+++.
T Consensus 34 rsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~ 113 (488)
T KOG2325|consen 34 RSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAI 113 (488)
T ss_pred HhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHH
Confidence 334555555565555555444455567765 246777889999999999999999999999999886 889999999999
Q ss_pred HHHHHHhh----hh-hHHHHHHHHHHHHHhhchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16660 444 LQLMWYGF----GS-QMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIF 514 (594)
Q Consensus 444 i~~~~~~~----~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~ 514 (594)
++.+++.. .+ ..|.+.++-++.|+|........+++++..-.++|-++++..+....+|..+||.+...+.
T Consensus 114 ~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~ 189 (488)
T KOG2325|consen 114 IGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT 189 (488)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence 99988843 22 5677888888889987777888999998877889999999998888888888888765543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.14 E-value=3e-08 Score=107.47 Aligned_cols=112 Identities=14% Similarity=0.267 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHh-hchHhHHHH
Q psy16660 402 VHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGS---QMWMMWAAGILASLA-SITYPAISA 477 (594)
Q Consensus 402 ~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~~l~g~~-~~~~~~~~~ 477 (594)
.+.++..+...++.++|.++.|.+.||+|||+.+..+.++..++.++..+.+ +.+.+.++-++.|++ +...+....
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~ 125 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI 125 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4567888999999999999999999999999999999999999999999988 889999999999999 888999999
Q ss_pred HHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16660 478 LVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLI 513 (594)
Q Consensus 478 ~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l 513 (594)
++.|..|+++||...++.+....+|..++..+.-.+
T Consensus 126 ~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 126 YISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999988888888777665433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00017 Score=73.44 Aligned_cols=131 Identities=11% Similarity=0.033 Sum_probs=112.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy16660 388 CLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASL 467 (594)
Q Consensus 388 ~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~ 467 (594)
.+..-+....|.+..+..++......+..+++...|.+.|++|||+......+..++.-.+-+.+++...+++.-.+.++
T Consensus 99 ~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~ 178 (528)
T KOG0253|consen 99 LILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGF 178 (528)
T ss_pred HHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhc
Confidence 33445556678888889999999999999999999999999999999999998888888888889999999999999998
Q ss_pred h-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 468 A-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 468 ~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
| +. .|...++-.+..|..+|+.-+-+. ....+|.++...+.=.+...+|++
T Consensus 179 g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr 230 (528)
T KOG0253|consen 179 GVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWR 230 (528)
T ss_pred cCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHH
Confidence 8 55 888889999999999999877777 788888888888887788887766
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0018 Score=68.81 Aligned_cols=162 Identities=14% Similarity=0.114 Sum_probs=103.0
Q ss_pred hHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhch------
Q psy16660 358 SLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGA------ 431 (594)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~------ 431 (594)
.+.+++|.|++..+++.....-+++........+=+.+ .|++.++.+++..+..-..++...+.++...--.+
T Consensus 270 ~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~li~~P~qii~~~~~~Kws~g~~P~~~~~~ 348 (544)
T PF13000_consen 270 SLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLVLIDFPFQIILPYYIGKWSAGSPPLDVDNK 348 (544)
T ss_pred HHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHHHHhhhHHHHHHHHhhhhhcCCCccccccc
Confidence 34456688898888888888888887777777777776 49999888777655555555555555555432111
Q ss_pred ---------------------HHHHHHHHHH----HHHHHHHHhhhh-----h--HHHHH-HHHHHHHHh-hchHhHHHH
Q psy16660 432 ---------------------KHTIIIGLVF----EMLQLMWYGFGS-----Q--MWMMW-AAGILASLA-SITYPAISA 477 (594)
Q Consensus 432 ---------------------~~~l~~~~~~----~~i~~~~~~~~~-----~--~~~~~-~~~~l~g~~-~~~~~~~~~ 477 (594)
-+....+... ..++..+....+ + ...++ +..++..+. ...+....+
T Consensus 349 ~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~A 428 (544)
T PF13000_consen 349 ALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMA 428 (544)
T ss_pred cccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111111 111111111111 1 12222 222333344 456677788
Q ss_pred HHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 478 LVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 478 ~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
+-+++.+|..-|+.+.+.|+..|+|+---..+.=++.|.+...
T Consensus 429 FharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~ 471 (544)
T PF13000_consen 429 FHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVA 471 (544)
T ss_pred HHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcccc
Confidence 8899999999999999999999999999888888999987754
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.2e-05 Score=61.67 Aligned_cols=69 Identities=23% Similarity=0.483 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHH
Q psy16660 103 LVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 173 (594)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~ 173 (594)
-...|+.+.+.|. ..|.+|.+.++.+.+..+. |.+.++..+...++.|++|.++||+|+++.++....+
T Consensus 6 k~~yf~~f~~~g~-~~Pfl~~~~~~~Gl~~~~i-Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 6 KAFYFFYFAALGC-LYPFLPLYLKQLGLSPSQI-GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHH-HHhhhhHhhhhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 3445566666676 8999999999988887766 9999999999999999999999999998876655443
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.8e-05 Score=79.51 Aligned_cols=119 Identities=17% Similarity=0.200 Sum_probs=97.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHHHh-hc
Q psy16660 399 FDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGS-------QMWMMWAAGILASLA-SI 470 (594)
Q Consensus 399 ~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~l~g~~-~~ 470 (594)
+++...+.+..+..++.++|+++.|++.||+|||++....++++.++.++.+... -.+.+...-.++|+| |.
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGG 160 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGG 160 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccC
Confidence 4456678899999999999999999999999999999999999988887665531 234555666788999 99
Q ss_pred hHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy16660 471 TYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMF 517 (594)
Q Consensus 471 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~ 517 (594)
=+|+..+..+|....+.||+..+.+..++..|...|..+.-.+...+
T Consensus 161 DYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~f 207 (538)
T KOG0252|consen 161 DYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIF 207 (538)
T ss_pred CCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHH
Confidence 99999999999999999999999888887777776666655555443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00031 Score=75.01 Aligned_cols=152 Identities=12% Similarity=0.117 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh----ch-HHHHHHHHHHHH
Q psy16660 369 LMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVL----GA-KHTIIIGLVFEM 443 (594)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~----g~-~~~l~~~~~~~~ 443 (594)
......-+...+.+.....++..|..++.|.++..+|.++.+.-+.-++.-++.|.+.||. || |+.+..+.+..+
T Consensus 15 i~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~ 94 (467)
T COG2211 15 IGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFA 94 (467)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHH
Confidence 3344444555566667777888999999999999999999999999999999999999975 44 455666656666
Q ss_pred HHHHHHhhhh------hHHHHHHHHHHHHHh-hchHhHHHHHHhhcCC-CccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16660 444 LQLMWYGFGS------QMWMMWAAGILASLA-SITYPAISALVSMHSD-ADRQGLVQGMVTGMRGLCNGLGPAMFGLIFY 515 (594)
Q Consensus 444 i~~~~~~~~~------~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~ 515 (594)
+...++...+ +....++...+++++ .....+..++..+..+ +++|.+..+.-....++|..+...+.+.+..
T Consensus 95 i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~ 174 (467)
T COG2211 95 IVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVK 174 (467)
T ss_pred HHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555555443 223344455566666 6666666677776654 5789999999999999999999999999998
Q ss_pred Hhhcc
Q psy16660 516 MFHVD 520 (594)
Q Consensus 516 ~~g~~ 520 (594)
..|-+
T Consensus 175 ~~g~~ 179 (467)
T COG2211 175 LFGGG 179 (467)
T ss_pred HhCCC
Confidence 87743
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00034 Score=72.86 Aligned_cols=172 Identities=17% Similarity=0.200 Sum_probs=129.7
Q ss_pred cCCchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhc-ccCchhhHHHHHHH
Q psy16660 95 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSD-LWGRKLFLLITVFV 173 (594)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsD-r~Grr~~l~~~~~~ 173 (594)
..++....++..++..+++.+ .-+++.+|.-+.-+-+..+...+.+....+..++-...|++.. |.+.|+.-.+++..
T Consensus 206 ~~~~a~~f~~fl~l~t~a~~~-QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~ 284 (403)
T PF03209_consen 206 ASPQARRFFVFLFLGTLAFFM-QDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLL 284 (403)
T ss_pred hCCChhHHHHHHHHHHHHHHh-hHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 345555666677777777777 7777777766644444445588889999999999999998888 56777777777766
Q ss_pred hhhhhhh-----hcchHHHHHHHHHHHHHHhHHHH-HHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhh
Q psy16660 174 TCLPIPL-----MTLDTWWFFAMISISGVFAVTFS-VVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISI 247 (594)
Q Consensus 174 ~~i~~~~-----~~~~~~~l~~~r~l~Gi~~~~~~-~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 247 (594)
..++..+ ...+.+.+...-++.|++.+.+. ...+...|...+++-|..+|.
T Consensus 285 ~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~----------------------- 341 (403)
T PF03209_consen 285 GALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGA----------------------- 341 (403)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHH-----------------------
Confidence 6665444 22378889999999999966555 557889999999999999999
Q ss_pred ccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHh----------cChHHHHHHHHH
Q psy16660 248 SGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKT----------YSLSLVVAVATA 317 (594)
Q Consensus 248 ~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~----------~gw~~~f~~~~~ 317 (594)
+++...++..+|..+|+.+.+. .+|..+|.+.++
T Consensus 342 ------------------------------------WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ 385 (403)
T PF03209_consen 342 ------------------------------------WGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAV 385 (403)
T ss_pred ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 9999999999999999887542 257778888887
Q ss_pred HHHHHHHHh
Q psy16660 318 VAILDVFFI 326 (594)
Q Consensus 318 ~~ll~~~~~ 326 (594)
..++++++.
T Consensus 386 ll~~a~~ll 394 (403)
T PF03209_consen 386 LLLAALVLL 394 (403)
T ss_pred HHHHHHHHH
Confidence 766665543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0011 Score=69.72 Aligned_cols=166 Identities=17% Similarity=0.072 Sum_probs=131.6
Q ss_pred hhhHHHHHHHHHHHH-hCCChhHHHH-HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy16660 382 EAGQYSCLFVYLKLV-MGFDEVHVAV-FIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMW 459 (594)
Q Consensus 382 ~~~~~~~~~~~~~~~-~g~s~~~~g~-~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 459 (594)
+-....++..|+.+. .|++..+..- ++-.-.=..++..+....+.|.++.|++++.+.+...+...++.+.++.+.+-
T Consensus 19 frPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq 98 (412)
T PF01770_consen 19 FRPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQ 98 (412)
T ss_pred cCCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHH
Confidence 355667777888876 7888888653 33333344456667788899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCC
Q psy16660 460 AAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNV 539 (594)
Q Consensus 460 ~~~~l~g~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 539 (594)
+.-+++|++........+++-..+|+++--++.+.......+|.+++..++-.+...-+.+
T Consensus 99 ~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~s------------------- 159 (412)
T PF01770_consen 99 LMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVS------------------- 159 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------------
Confidence 9999999997778888899999999999899999999999999999999888777643332
Q ss_pred CCCCCcCCChhHHHHHHHHHHHHHHHHhccCccc
Q psy16660 540 NSYPSVIPGPPFVFGALLVIAALLVATFIPESIV 573 (594)
Q Consensus 540 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 573 (594)
+.....+......+++++.+++|+.++
T Consensus 160 -------y~~L~~isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 160 -------YFQLNYISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 334556667777777787788876543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00065 Score=73.37 Aligned_cols=132 Identities=23% Similarity=0.365 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-h--hchHhHHHHHHhhcCCCcc
Q psy16660 411 IGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASL-A--SITYPAISALVSMHSDADR 487 (594)
Q Consensus 411 ~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~-~--~~~~~~~~~~~~~~~p~~~ 487 (594)
.++..++.....|.++||+|||..+........+...++.+.. |...+ +.++ | ...+....+++++...+++
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~ 145 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE 145 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchhH
Confidence 3778889999999999999999999988888887777766655 22222 3333 2 5667888999999999999
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHH-H
Q psy16660 488 QGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVA-T 566 (594)
Q Consensus 488 ~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~ 566 (594)
|....|+.+.....+..++|.+.+.+.+..|+. ..|.++.+..+++.+.. .
T Consensus 146 R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a----------------------------~~f~ia~~~~~~~~~y~~~ 197 (463)
T KOG2816|consen 146 RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIA----------------------------LVFLIAAASGILSLLYMLL 197 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCch----------------------------HHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999987654 67888777777766655 4
Q ss_pred hccCccccc
Q psy16660 567 FIPESIVTR 575 (594)
Q Consensus 567 ~~~~~~~~~ 575 (594)
+++|...++
T Consensus 198 ~l~Esl~~~ 206 (463)
T KOG2816|consen 198 FLPESLQEK 206 (463)
T ss_pred ccccccCcc
Confidence 556654443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00072 Score=72.99 Aligned_cols=133 Identities=19% Similarity=0.244 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----chHHHHHHHHHHHHHHHHHHhhhh----hHHH
Q psy16660 387 SCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVL-----GAKHTIIIGLVFEMLQLMWYGFGS----QMWM 457 (594)
Q Consensus 387 ~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~-----g~~~~l~~~~~~~~i~~~~~~~~~----~~~~ 457 (594)
....+|+++.+|.++.+...+.....+-. ...++.|.++|-+ +||.-++++.++..++.+.++..+ +...
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~ 88 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI 88 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence 34557888889999999887766655544 4467889999976 366677777777766555555432 3444
Q ss_pred HHHHHHHHHHh-hchHhHHHHHHhhcCC--CccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 458 MWAAGILASLA-SITYPAISALVSMHSD--ADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 458 ~~~~~~l~g~~-~~~~~~~~~~~~~~~p--~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
..+.+++..+| ........+++.|... ++.+|..++.....+.+|+.++..+.|.+.+..+.+
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~ 154 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQ 154 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCe
Confidence 45555666666 6666777777777663 233788899999999999999999999998876543
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00022 Score=56.87 Aligned_cols=72 Identities=22% Similarity=0.403 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q psy16660 370 MLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFE 442 (594)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~ 442 (594)
.+-...++.+.+......+++.|+++ .|+++.++|.+.++..+..+++.++.|.++||+++++.+.....++
T Consensus 4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 4 PLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 44556677777788888999999997 6999999999999999999999999999999999988777665443
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00028 Score=73.85 Aligned_cols=129 Identities=10% Similarity=0.095 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh------hhHH--HH
Q psy16660 387 SCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFG------SQMW--MM 458 (594)
Q Consensus 387 ~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~------~~~~--~~ 458 (594)
.....|..+.|| +...+-++..++.+..+...+.+-|+.||+|-|..+.++..+.+++..+=..+ +..+ ..
T Consensus 65 a~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~ 143 (480)
T KOG2563|consen 65 APINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLT 143 (480)
T ss_pred hhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhh
Confidence 344456777778 77778888999999999999999999999999999999999999987764432 2334 44
Q ss_pred HHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16660 459 WAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYM 516 (594)
Q Consensus 459 ~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~ 516 (594)
..+..+.+.. .+......-.....+|+++|+++..+..+...+|.+++-.+...+...
T Consensus 144 ~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 144 HTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred HHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 4555555555 344444445556678999999999999888889998888777776543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00074 Score=61.66 Aligned_cols=86 Identities=12% Similarity=0.129 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccc
Q psy16660 139 IMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL-MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEH 216 (594)
Q Consensus 139 ~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~-~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~ 216 (594)
-.++.+....+..++.+.+.++.|.|+.++++.+.+++-... +.++.+.++.+-++.|++ +..+.....++.+..+++
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~ 121 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEE 121 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHH
Confidence 345556666777788888999999999999999888765555 566888889999999998 668888888999998888
Q ss_pred cccchhch
Q psy16660 217 ERSLAYGL 224 (594)
Q Consensus 217 ~r~~~~g~ 224 (594)
+|++..++
T Consensus 122 ~~~~~~~i 129 (156)
T PF05978_consen 122 TIGRNTGI 129 (156)
T ss_pred HHhhHHHH
Confidence 88888887
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0042 Score=56.74 Aligned_cols=107 Identities=16% Similarity=0.244 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCc
Q psy16660 408 IAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDAD 486 (594)
Q Consensus 408 ~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~ 486 (594)
.++......+..++.+.+.+++|.|+.+++|.+...+-.... +.++.+.++.+.++.|++ +..|.....++.+..+++
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~ 121 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEE 121 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHH
Confidence 444445556777888999999999999999988877655443 345678888999999999 899999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16660 487 RQGLVQGMVTGMRGLCNGLGPAMFGLIFY 515 (594)
Q Consensus 487 ~~g~~~g~~~~~~~lg~~lg~~~~g~l~~ 515 (594)
.+++-.++.-.+.+.+.++|..+.-.+.+
T Consensus 122 ~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 122 TIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998888877666654
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0047 Score=68.58 Aligned_cols=84 Identities=14% Similarity=0.116 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHhhh-----------------hhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHH
Q psy16660 434 TIIIGLVFEMLQLMWYGFG-----------------SQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMV 495 (594)
Q Consensus 434 ~l~~~~~~~~i~~~~~~~~-----------------~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~ 495 (594)
.+-+|+.+..+++...+.. -+.++.+.-.++.|++ .+......-+.-+.+|++.|..++++.
T Consensus 420 rig~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~ 499 (571)
T KOG1237|consen 420 RIGIGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALW 499 (571)
T ss_pred eeeccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHH
Confidence 4445666666666555531 1345666778889999 777777777777889999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHh
Q psy16660 496 TGMRGLCNGLGPAMFGLIFYMF 517 (594)
Q Consensus 496 ~~~~~lg~~lg~~~~g~l~~~~ 517 (594)
.....+|..++..+...+....
T Consensus 500 l~t~a~G~~lss~Lv~~v~~~t 521 (571)
T KOG1237|consen 500 LLTVAVGNYLSSVLVSLVQFST 521 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988776554
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.44 E-value=2.3e-05 Score=86.45 Aligned_cols=128 Identities=11% Similarity=0.138 Sum_probs=2.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhh----------------
Q psy16660 390 FVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGS---------------- 453 (594)
Q Consensus 390 ~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~---------------- 453 (594)
-.-++.+|+++..+.|++.+.+-++.++..++..++.+|.+|-+.+-.|.++++++.+++.+.+
T Consensus 26 lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~ 105 (539)
T PF03137_consen 26 LTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNG 105 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccc
Confidence 3456677999999999999999999999999999999998888888899999999888765310
Q ss_pred ----------------------------------hHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHH
Q psy16660 454 ----------------------------------QMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGM 498 (594)
Q Consensus 454 ----------------------------------~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 498 (594)
..+.++++.++.|+| ...++...+|+-|.+++++.+...|+...+
T Consensus 106 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~ 185 (539)
T PF03137_consen 106 NSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAM 185 (539)
T ss_dssp ----------------------------------------------SSS-------------------------------
T ss_pred ccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHH
Confidence 123456677788888 778999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHh
Q psy16660 499 RGLCNGLGPAMFGLIFYMF 517 (594)
Q Consensus 499 ~~lg~~lg~~~~g~l~~~~ 517 (594)
..+|-++|=.+++.....+
T Consensus 186 ~~lGPa~Gf~lg~~~L~~y 204 (539)
T PF03137_consen 186 SILGPALGFLLGSFCLRIY 204 (539)
T ss_dssp -------------------
T ss_pred hhccHHHHHHHHHHHHhce
Confidence 9999999888888777643
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.26 Score=52.73 Aligned_cols=170 Identities=12% Similarity=0.051 Sum_probs=93.9
Q ss_pred hhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhc----------ChHHHHHHHHHHHHHHHHHhhee
Q psy16660 260 AYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTY----------SLSLVVAVATAVAILDVFFILVA 329 (594)
Q Consensus 260 a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~----------gw~~~f~~~~~~~ll~~~~~~~~ 329 (594)
....|.|+.+|-.|-++. ++...+++..++..+..++.++- ..+..+.+.+..++++..+..+.
T Consensus 171 ~faNeitt~~eakRFy~l------f~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~ 244 (509)
T COG3202 171 QFANEITTIEEAKRFYPL------FGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYI 244 (509)
T ss_pred HHHHHhhhHHHhhhhHHH------HHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666 88888888888888777776521 13334444444444433332221
Q ss_pred ---ccCCCch-hhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhH--
Q psy16660 330 ---VPESLPE-KVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVH-- 403 (594)
Q Consensus 330 ---l~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-- 403 (594)
+.+.+.. ..++++. +.+..+....++++...|.|.++.+.+...+++.+...+...+-.-.++.+-.+.+.
T Consensus 245 ~r~il~~~~f~~~~~~kk---~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~ 321 (509)
T COG3202 245 NRNVLTDPLFYLRAKKKK---KKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTA 321 (509)
T ss_pred HhhcccCcchhHHHhccc---ccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHH
Confidence 1222221 0111110 111122334567777888999888888888877776666655554444433222222
Q ss_pred -HHHHHHHHHHH-HHHHHHHHHHHHHhhchHHHHHHH
Q psy16660 404 -VAVFIAVIGTL-SVSAQIILGCLMNVLGAKHTIIIG 438 (594)
Q Consensus 404 -~g~~~~~~~i~-~~~~~~~~g~l~dr~g~~~~l~~~ 438 (594)
.|.+....++. .++...+++.+.+|.|=....++.
T Consensus 322 f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~Alit 358 (509)
T COG3202 322 FMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALIT 358 (509)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHH
Confidence 34445556666 446677788888888855444443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0098 Score=59.02 Aligned_cols=129 Identities=22% Similarity=0.324 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHH
Q psy16660 387 SCLFVYLKLVMGFDE--VHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQ--MWMMWAAG 462 (594)
Q Consensus 387 ~~~~~~~~~~~g~s~--~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~ 462 (594)
...+.+..+ ++.+. ...++......+...++.++.|++.||.|+|+.+..+.....++.++..+..+ .+...+..
T Consensus 23 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (338)
T COG0477 23 PALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILR 101 (338)
T ss_pred HHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344445444 34444 47888888999999988899999999999998877777654455444444444 56666666
Q ss_pred HHHHHh-hchHhHHHHHHhhcCCC-ccchHHHHHHHH-HHHHHHhHHHHHHHHHHHH
Q psy16660 463 ILASLA-SITYPAISALVSMHSDA-DRQGLVQGMVTG-MRGLCNGLGPAMFGLIFYM 516 (594)
Q Consensus 463 ~l~g~~-~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~-~~~lg~~lg~~~~g~l~~~ 516 (594)
...|++ +...+...+++.+..|+ ++++...+.... ...++..+++.+.+.+...
T Consensus 102 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 102 LLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777 77888999999999987 678888888888 5778888888777777765
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0013 Score=73.55 Aligned_cols=181 Identities=10% Similarity=0.093 Sum_probs=133.5
Q ss_pred hHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhh----------
Q psy16660 384 GQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGS---------- 453 (594)
Q Consensus 384 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~---------- 453 (594)
+.....-.-++.+++++..+.|++...+-++..+...+.....-|..|.+.+-.|.++++++.++..+.+
T Consensus 114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~ 193 (735)
T KOG3626|consen 114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYEL 193 (735)
T ss_pred hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhh
Confidence 4444444566778999999999999999999999999999999999999999999999999888866410
Q ss_pred -----------------------------------------hHH-HHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchH
Q psy16660 454 -----------------------------------------QMW-MMWAAGILASLA-SITYPAISALVSMHSDADRQGL 490 (594)
Q Consensus 454 -----------------------------------------~~~-~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~ 490 (594)
.+| .++.+.++.|+| ...++.-.+|+-|.+.+++...
T Consensus 194 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~Spl 273 (735)
T KOG3626|consen 194 EVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPL 273 (735)
T ss_pred hhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcH
Confidence 023 455677888999 7889999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcC-CChhHHHHHHHHHHHHHHHHhcc
Q psy16660 491 VQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVI-PGPPFVFGALLVIAALLVATFIP 569 (594)
Q Consensus 491 ~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~ 569 (594)
..|+..++..+|-++|=.+++.+...+.-... .+.. ..+..-...+ +...|++++.+.+++.+..+++|
T Consensus 274 Ylgi~~~~~~lGPaiGfllgS~~l~lYvD~~~-----~~~~-----it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fP 343 (735)
T KOG3626|consen 274 YLGILYSMAILGPAIGFLLGSFCLKLYVDFGL-----SPIG-----ITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFP 343 (735)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHeeecccc-----CCCC-----CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999998888888765431100 0000 0111111111 22457777888888888888887
Q ss_pred Ccccc
Q psy16660 570 ESIVT 574 (594)
Q Consensus 570 ~~~~~ 574 (594)
+..++
T Consensus 344 k~lp~ 348 (735)
T KOG3626|consen 344 KELPK 348 (735)
T ss_pred ccCcc
Confidence 76443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0022 Score=51.81 Aligned_cols=65 Identities=14% Similarity=0.110 Sum_probs=57.1
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhhhc
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT 182 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~~~ 182 (594)
+.|++|.+.++.+.+..+. |++.+..++|+.++.+....+.++..+++.+..+.+...+..+.++
T Consensus 11 yTplLP~M~~~~~ls~~~a-g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma 75 (85)
T PF06779_consen 11 YTPLLPLMQADGGLSLSQA-GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA 75 (85)
T ss_pred HHhHhHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999988887776 9999999999999999999999998888888888888777766643
|
Note that many members are hypothetical proteins. |
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.051 Score=57.00 Aligned_cols=108 Identities=9% Similarity=0.028 Sum_probs=60.2
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHH-------hhhhhHHHHHHHHHHHHHh-hchHhH
Q psy16660 405 AVFIAV-IGTLSVSAQIILGCLMNVLGAKHTIIIGLV-FEMLQLMWY-------GFGSQMWMMWAAGILASLA-SITYPA 474 (594)
Q Consensus 405 g~~~~~-~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~-~~~i~~~~~-------~~~~~~~~~~~~~~l~g~~-~~~~~~ 474 (594)
-+.... +.+...+|.....++.++ ++|.+.+...+ ...+-++.+ ....+.+..+....++|+. |-..+.
T Consensus 285 ~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl 363 (406)
T KOG1479|consen 285 LLLVFLSFNVFDLIGSILAALLTWP-DPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSL 363 (406)
T ss_pred HHHHHHHhHHHHHhhhhhhhcccCC-CCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhh
Confidence 334444 677777887776666443 23333322221 111111111 1235667778888888998 666677
Q ss_pred HHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16660 475 ISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIF 514 (594)
Q Consensus 475 ~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~ 514 (594)
...+..+.+|++++-. .|......-.++.....+.+++.
T Consensus 364 ~m~~aPk~v~~~e~e~-aG~~m~~fl~~Gl~~G~~~s~l~ 402 (406)
T KOG1479|consen 364 IMMYAPKQVKPSEKEA-AGNLMVFFLVGGLALGSLLSWVF 402 (406)
T ss_pred eehhcCCCCChHHHHH-HHHHHHHHHHHHHHHhhHHHHHH
Confidence 7888888887766544 44444444444444444555554
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0048 Score=65.20 Aligned_cols=105 Identities=17% Similarity=0.221 Sum_probs=77.4
Q ss_pred hhHHHHHHHhhhhhhhh--cc---------hHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccc---cchhchhHHHH
Q psy16660 165 LFLLITVFVTCLPIPLM--TL---------DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHER---SLAYGLKFIAL 229 (594)
Q Consensus 165 ~~l~~~~~~~~i~~~~~--~~---------~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r---~~~~g~~~~~~ 229 (594)
|+++++.+++++|..++ +. +.+.++++-.+.++| ++.=+...++++|.++++++ .+.+.+
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~----- 76 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNW----- 76 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHH-----
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHH-----
Confidence 45666777766665552 11 236788888889999 66778889999999987642 223333
Q ss_pred HHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChH
Q psy16660 230 KIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLS 309 (594)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~ 309 (594)
+-.+.++|..+++.+.+++.++.||.
T Consensus 77 ------------------------------------------------------fY~~in~G~~~~~~~~~~i~~~~~~~ 102 (372)
T PF00854_consen 77 ------------------------------------------------------FYWGINIGSLFSPTLVPYIQQNYGWF 102 (372)
T ss_dssp ------------------------------------------------------HHHHHHHHHHHHHHCCCHHHHCS-HH
T ss_pred ------------------------------------------------------HHHHHhhhhHhhcccchhhccccchh
Confidence 77888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhe
Q psy16660 310 LVVAVATAVAILDVFFILV 328 (594)
Q Consensus 310 ~~f~~~~~~~ll~~~~~~~ 328 (594)
+.|.+.++..+++++..+.
T Consensus 103 ~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 103 LGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 9999999888877665544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.2 Score=55.39 Aligned_cols=145 Identities=13% Similarity=0.155 Sum_probs=83.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH---HHH-HH
Q psy16660 373 VTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEM---LQL-MW 448 (594)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~---i~~-~~ 448 (594)
+..++..++.......+.-.+...+|-+....+.+.+.+..+..+|+.+++++.++.-++.. .+-+.+.. ++. ++
T Consensus 21 ~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll 99 (521)
T PRK03612 21 AAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALIL 99 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 33344444444445555556666678888888888888888888999988887644333222 11111111 111 11
Q ss_pred Hh---hhhhH-HHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHH-Hhhc
Q psy16660 449 YG---FGSQM-WMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFY-MFHV 519 (594)
Q Consensus 449 ~~---~~~~~-~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~-~~g~ 519 (594)
.. +.... ...+...++.++. |...|....+..+.. .++.|...|-......+|+++|+.+.+++.- .+|.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~ 175 (521)
T PRK03612 100 YAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGL 175 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcch
Confidence 11 11111 1122223334444 666777766665433 2345777888889999999999999887764 5554
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.025 Score=45.74 Aligned_cols=75 Identities=9% Similarity=0.064 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy16660 383 AGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMM 458 (594)
Q Consensus 383 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 458 (594)
+.+...+|...++ .++|..+.|++-+.+.++.++|.+...++.++.++++.+..+.+...+..+.+++.++.+..
T Consensus 9 FayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 9 FAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred HHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 3444456665555 69999999999999999999999999999999888999999999999999999888776543
|
Note that many members are hypothetical proteins. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.29 Score=52.83 Aligned_cols=106 Identities=8% Similarity=0.033 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHH--HHHHHHHHHHh---------hhhhHHHHHHHHHHHHHh-h
Q psy16660 404 VAVFIAVIGTLSVSAQIILGCLMNVLGAK--HTIIIGL--VFEMLQLMWYG---------FGSQMWMMWAAGILASLA-S 469 (594)
Q Consensus 404 ~g~~~~~~~i~~~~~~~~~g~l~dr~g~~--~~l~~~~--~~~~i~~~~~~---------~~~~~~~~~~~~~l~g~~-~ 469 (594)
.-..+..+.++-.+|+.+..+..- .+++ .+.+... ++....+++.. +.++.+..++..+++|+. |
T Consensus 309 ~~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG 387 (437)
T TIGR00939 309 PIICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG 387 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence 345677788888888886654321 1222 2222211 11111111111 124667777788889998 7
Q ss_pred chHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHH
Q psy16660 470 ITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMF 510 (594)
Q Consensus 470 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~ 510 (594)
...+....+..+.+++++|-.+..+....-.+|-.+|..+.
T Consensus 388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888889888888888888888888888887663
|
|
| >KOG3097|consensus | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.32 Score=49.36 Aligned_cols=69 Identities=14% Similarity=0.106 Sum_probs=48.5
Q ss_pred HHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcc
Q psy16660 144 GFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL-MTLDTWWFFAMISISGVF-AVTFSVVFAYVADV 212 (594)
Q Consensus 144 ~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~-~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~ 212 (594)
.+.....+++.+.+..++|-|+++.++...+...... +-+.+..++..-...|++ +..+..--+++++.
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~ 138 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPM 138 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcchhHHhhccHHHhhccccccccccCcceecHH
Confidence 4444555666668899999999999988887766555 556788888888899997 44444334444443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.35 Score=52.52 Aligned_cols=114 Identities=9% Similarity=0.023 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh-----h----------------------
Q psy16660 402 VHVAVFIAVIGTLSVSA-QIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFG-----S---------------------- 453 (594)
Q Consensus 402 ~~~g~~~~~~~i~~~~~-~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~-----~---------------------- 453 (594)
+...++.....+.+.+. .++.+++++|++++++...........++++++. +
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 45666666555555544 7889999999999988877666555555444432 0
Q ss_pred ----hHHHHHHHHHHHHHh-hchHh-HHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16660 454 ----QMWMMWAAGILASLA-SITYP-AISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFY 515 (594)
Q Consensus 454 ----~~~~~~~~~~l~g~~-~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~ 515 (594)
+.|...+..+...+- ....+ ..+++..|....++..+.+++.....++|..+++.+..++.+
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222333333333 44455 778999999999999999999999999999999999888775
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.024 Score=59.80 Aligned_cols=111 Identities=17% Similarity=0.142 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhh---------hHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCc---cchHHHHHHHHHH
Q psy16660 433 HTIIIGLVFEMLQLMWYGFGS---------QMWMMWAAGILASLA-SITYPAISALVSMHSDAD---RQGLVQGMVTGMR 499 (594)
Q Consensus 433 ~~l~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~---~~g~~~g~~~~~~ 499 (594)
+.+.++.++..+|++++.... +.+.+++++.+.++| |..=|...++..|.++++ ++.+....+....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567888888888888854431 235788888999999 889999999999999876 3566777888999
Q ss_pred HHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhccCc
Q psy16660 500 GLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIPES 571 (594)
Q Consensus 500 ~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 571 (594)
++|..+++...+++.+..|+. ..|.++.+..+++++..+.-++.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~----------------------------~~f~i~~~~~~~~~~~f~~~~~~ 125 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWF----------------------------LGFGIPAIGMLLALIVFLSGRKR 125 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HH----------------------------HHHHHHHHHHHHHHHHHHCCCCT
T ss_pred hhhhHhhcccchhhccccchh----------------------------hhhhHHHHHHHHHHHHHHhCCcC
Confidence 999999999999999887765 78999888888888877655443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2601|consensus | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.1 Score=53.63 Aligned_cols=76 Identities=12% Similarity=0.088 Sum_probs=52.9
Q ss_pred cCCchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHH
Q psy16660 95 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV 171 (594)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~ 171 (594)
.++....++...++...+.-+ ..-....++.++++++-...+.-..+-.....+..++.|.+.|+..|+|++...+
T Consensus 25 ls~~~i~Ly~gy~lt~wgdR~-W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L 100 (503)
T KOG2601|consen 25 LSSTVIFLYLGYFLTTWGDRM-WEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWL 100 (503)
T ss_pred ccceeehhhHHHHHhHhhHhH-HHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHH
Confidence 344455566666666665544 5556677788888766555455555556677788999999999999999877654
|
|
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.092 Score=52.62 Aligned_cols=68 Identities=15% Similarity=0.262 Sum_probs=51.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16660 447 MWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIF 514 (594)
Q Consensus 447 ~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~ 514 (594)
.++.+.++.|...+..+.-|+- |..+.-..--+.+..++++|--+++.......+|-.++..+.-.+.
T Consensus 334 a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh 402 (409)
T KOG3880|consen 334 AWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH 402 (409)
T ss_pred HHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence 3455677888777777777775 6777777667777788999999999998888888887776654443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.68 E-value=1.3 Score=47.61 Aligned_cols=154 Identities=15% Similarity=0.146 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH--
Q psy16660 366 QTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEM-- 443 (594)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~-- 443 (594)
+..+.++..-++..+..-......+.|+.+.+.-+-.-.+.+-....+..++.+...|...||..|.+.+....+..-
T Consensus 2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~s 81 (432)
T PF06963_consen 2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLS 81 (432)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHH
Confidence 345677788888888888889999999999876666667777777788888899999999999998887766654421
Q ss_pred --HHHHHHh--h-h-h----hHHHHHHHHHH-HHHh--hchHhHHHHH------HhhcC--CCccchHHHHHHHHHHHHH
Q psy16660 444 --LQLMWYG--F-G-S----QMWMMWAAGIL-ASLA--SITYPAISAL------VSMHS--DADRQGLVQGMVTGMRGLC 502 (594)
Q Consensus 444 --i~~~~~~--~-~-~----~~~~~~~~~~l-~g~~--~~~~~~~~~~------~~~~~--p~~~~g~~~g~~~~~~~lg 502 (594)
+++.++. + . . +.+.......+ ..++ .-........ +.... +++...+.++.+.-+-.+.
T Consensus 82 v~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~c 161 (432)
T PF06963_consen 82 VAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFC 161 (432)
T ss_pred HHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHH
Confidence 1111111 1 1 1 12222222221 1111 1111222221 12222 3445566666666666789
Q ss_pred HhHHHHHHHHHHHHhhc
Q psy16660 503 NGLGPAMFGLIFYMFHV 519 (594)
Q Consensus 503 ~~lg~~~~g~l~~~~g~ 519 (594)
..++|.+.|.+.+..+.
T Consensus 162 kllaPl~vG~l~t~~s~ 178 (432)
T PF06963_consen 162 KLLAPLFVGLLMTFASP 178 (432)
T ss_pred HHHHHHHHHHHhhccCH
Confidence 99999999999886553
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.018 Score=60.69 Aligned_cols=145 Identities=15% Similarity=0.158 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh----hchHHH-HHHHHH
Q psy16660 366 QTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNV----LGAKHT-IIIGLV 440 (594)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr----~g~~~~-l~~~~~ 440 (594)
+.+.......+...+....-..+.++|+++ .|.+....+.+....-+..++.+++.|..+|| +||||. +..+..
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 444555555555566666677788999988 59999999998888888889999999999996 466554 445566
Q ss_pred HHHHHHHHHhhhhhH-----------------HHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchH-HHHHHHHHHHH
Q psy16660 441 FEMLQLMWYGFGSQM-----------------WMMWAAGILASLA-SITYPAISALVSMHSDADRQGL-VQGMVTGMRGL 501 (594)
Q Consensus 441 ~~~i~~~~~~~~~~~-----------------~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~-~~g~~~~~~~l 501 (594)
...++++++++.... ...++++.+.-+. .......-++..|...++++-+ +++.+..+..+
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~av 190 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAV 190 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHh
Confidence 677777777654221 1223333344444 4677888999999998887777 99999999999
Q ss_pred HHhHHHHHHH
Q psy16660 502 CNGLGPAMFG 511 (594)
Q Consensus 502 g~~lg~~~~g 511 (594)
|+.+|=.+++
T Consensus 191 GnvLGY~~g~ 200 (498)
T KOG0637|consen 191 GNVLGYALGS 200 (498)
T ss_pred cceeeeeccc
Confidence 9988766655
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.48 Score=46.71 Aligned_cols=201 Identities=9% Similarity=0.096 Sum_probs=86.5
Q ss_pred cChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhH
Q psy16660 306 YSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQ 385 (594)
Q Consensus 306 ~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (594)
-+|++++.+.+++.++.+++..++ +++-+...+.+.+ +.+....+........+|++..|..++.....-.. ..
T Consensus 38 ~~W~~I~si~~lL~~IpLIly~if--Gk~fd~~~~~~k~--~k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~--~V 111 (267)
T PF07672_consen 38 NNWQWILSIFILLIFIPLILYIIF--GKNFDIYSPKEKQ--EKENSTLSKKPSYKSILKEKETWKWILIYGIWLVV--VV 111 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--cccccccCccccc--ccccccccccchHHHHHccchHHHHHHHHHHHhee--EE
Confidence 359999998887776655544332 2211111111000 00001122335677788998887766554432221 11
Q ss_pred HHHHHHHHHHHhCCChh---------H----HHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHH----HHHHHHHHHHH
Q psy16660 386 YSCLFVYLKLVMGFDEV---------H----VAVFIAVIGTLSVSAQIILGCLMNVL-GAKHTII----IGLVFEMLQLM 447 (594)
Q Consensus 386 ~~~~~~~~~~~~g~s~~---------~----~g~~~~~~~i~~~~~~~~~g~l~dr~-g~~~~l~----~~~~~~~i~~~ 447 (594)
....+.+.......++. . .......+-.+..+|.+..|...+.- .||+.+. .+.++..+..+
T Consensus 112 ~p~t~~~~~~~~~~s~~ni~~~~~~~~~~~~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~ 191 (267)
T PF07672_consen 112 FPFTPSWFNILIWISPANIKSVVSGGGFNWIIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIV 191 (267)
T ss_pred EeccchhHhHhhhcCcccccccccccccchhhHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 12122222211111111 1 12223333333335556666665433 3444332 23333333333
Q ss_pred HH-hhhh----hHHHHHHHHHHHHHh-hchHhHHHHHHhh--cCCCccchHHHHHHHHHHHHHHhHHHHHHHH
Q psy16660 448 WY-GFGS----QMWMMWAAGILASLA-SITYPAISALVSM--HSDADRQGLVQGMVTGMRGLCNGLGPAMFGL 512 (594)
Q Consensus 448 ~~-~~~~----~~~~~~~~~~l~g~~-~~~~~~~~~~~~~--~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~ 512 (594)
+. .... ....+++..++.|+. =...+.....-.| -.+|++.|...|+.-..+.+.-.+.-.+...
T Consensus 192 ~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S~ 264 (267)
T PF07672_consen 192 VVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGVILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDIILSV 264 (267)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHHHhcChhhhcCCCcceehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 1121 223344444444443 1222222222222 2345667777777777776666655554443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.1 Score=49.60 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=26.1
Q ss_pred HhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhc
Q psy16660 125 NRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSD 159 (594)
Q Consensus 125 ~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsD 159 (594)
...+-+++....+.+.+++.++..+|+.+.|++.+
T Consensus 41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~ 75 (521)
T PRK03612 41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLR 75 (521)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33333444444599999999999999999988863
|
|
| >KOG4830|consensus | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.011 Score=57.46 Aligned_cols=77 Identities=19% Similarity=0.177 Sum_probs=51.1
Q ss_pred CCchhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhh---------cccCchhh
Q psy16660 96 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALS---------DLWGRKLF 166 (594)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~ls---------Dr~Grr~~ 166 (594)
+.+++..-+.-++..+.-+. ....+-.+.++.+.++... .+++-...+..++..|+.|..+ ||+|||+.
T Consensus 16 r~svf~yGvGHmlNDitASc-WFTYlllfltqiglsp~~~-AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~ 93 (412)
T KOG4830|consen 16 RTSVFAYGVGHMLNDITASC-WFTYLLLFLTQIGLSPSSR-AMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS 93 (412)
T ss_pred ceeeeeechhHHHhhHHHHH-HHHHHHHHHHHhcCCcchh-HHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence 34444444455555555444 5666667778888777666 6888889999999999887554 58999876
Q ss_pred H-HHHHHHh
Q psy16660 167 L-LITVFVT 174 (594)
Q Consensus 167 l-~~~~~~~ 174 (594)
. .++.++.
T Consensus 94 wh~~gt~lV 102 (412)
T KOG4830|consen 94 WHLIGTVLV 102 (412)
T ss_pred eeecccEEE
Confidence 3 3444333
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.51 Score=49.92 Aligned_cols=110 Identities=12% Similarity=0.120 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcC
Q psy16660 405 AVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHS 483 (594)
Q Consensus 405 g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~ 483 (594)
+.+.....+-.++..++.+++.+|+..+.-+....+++++++++.++.++.+.-+++.++.+++ +..-.....+. ..+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt-~~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLT-HFY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHH-Hhc
Confidence 3444444455566677788888988876667777778888999999989999888888888888 65555555553 355
Q ss_pred CCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 484 DADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 484 p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
++. ..+........++.+|+...-.+.+ .|..
T Consensus 141 ~~~----~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s 172 (402)
T PF02487_consen 141 GKS----SLSAWSSGTGGAGLVGALYYLGLTT-LGLS 172 (402)
T ss_pred Ccc----ccccccCCcChhhHHHHHHHHHHHH-hCcC
Confidence 442 3444445555666677766655554 5543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=94.40 E-value=1.8 Score=48.31 Aligned_cols=151 Identities=17% Similarity=0.090 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHH
Q psy16660 370 MLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVL-GAKHTIIIGLVFEMLQLMW 448 (594)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~i~~~~ 448 (594)
..+....+-.++..+....+-.|+...++.+...+.-......-......+++++++|-+ ||-+.+.++.++..+++.+
T Consensus 41 ~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~ 120 (571)
T KOG1237|consen 41 FILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFG 120 (571)
T ss_pred HHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555556677888888888776665555555555557778889999976 7888888888877777655
Q ss_pred Hhhhh----------------------h---HHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCc------cchHHHHHHH
Q psy16660 449 YGFGS----------------------Q---MWMMWAAGILASLA-SITYPAISALVSMHSDAD------RQGLVQGMVT 496 (594)
Q Consensus 449 ~~~~~----------------------~---~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~------~~g~~~g~~~ 496 (594)
+.... + ...++.++.+..+| +..-|...++-.|.+++. .....+....
T Consensus 121 lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~y 200 (571)
T KOG1237|consen 121 LTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFY 200 (571)
T ss_pred HHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHH
Confidence 44311 1 12345555666667 777888888888888732 2235666777
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 497 GMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 497 ~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
+..++|..++-.+.-++-+..|+.
T Consensus 201 f~~~~g~l~a~t~~vyiq~~~~w~ 224 (571)
T KOG1237|consen 201 FSQNGGALLAQTVLVYIQDNVGWK 224 (571)
T ss_pred HHHHHHHHHHHHHHHhhhhcccce
Confidence 778888888888877777766655
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.087 Score=51.76 Aligned_cols=149 Identities=18% Similarity=0.205 Sum_probs=93.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-h
Q psy16660 391 VYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-S 469 (594)
Q Consensus 391 ~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~ 469 (594)
+|+.+.+|+...++|.++.......+..+.+.|-+.||.|||+..+.-++...++++- -.++....+.++-++.|+. .
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiT-KhSpqYkVLmVGR~LGGiaTs 139 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT-KHSPQYKVLMVGRVLGGIATS 139 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh-hcCCceEEEeehhhhhhHHHH
Confidence 3444557888899998887777777788889999999999998766555554444432 2344555667777787877 6
Q ss_pred chHhHHHHH-HhhcCCCcc-----chHHHHH-HHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCC
Q psy16660 470 ITYPAISAL-VSMHSDADR-----QGLVQGM-VTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSY 542 (594)
Q Consensus 470 ~~~~~~~~~-~~~~~p~~~-----~g~~~g~-~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 542 (594)
..++..-++ +.|..+++. .....+- ......+-.+++...+..+.|.++.
T Consensus 140 LLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~sl----------------------- 196 (454)
T KOG4332|consen 140 LLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSL----------------------- 196 (454)
T ss_pred HHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc-----------------------
Confidence 666666543 556553221 1111111 2233335555666666677777664
Q ss_pred CCcCCChhHHHHHHHHHHHHHHHH
Q psy16660 543 PSVIPGPPFVFGALLVIAALLVAT 566 (594)
Q Consensus 543 ~~~~~~~~f~~~~~~~~~~~~~~~ 566 (594)
+|-.+|..++.++.++..+.+
T Consensus 197 ---GPVAPFdAAacfLaigmAvil 217 (454)
T KOG4332|consen 197 ---GPVAPFDAAACFLAIGMAVIL 217 (454)
T ss_pred ---CCCCchHHHHHHHHHHHHHHH
Confidence 355778777766666555444
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=93.05 E-value=1.4 Score=47.53 Aligned_cols=111 Identities=12% Similarity=0.195 Sum_probs=92.2
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhh
Q psy16660 404 VAVF-IAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSM 481 (594)
Q Consensus 404 ~g~~-~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~ 481 (594)
+|+. .++......+..++++.+.|+.++|+.+.++......-.+.+.+ .|.+..+...++.|+| +..+...-.++++
T Consensus 51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~ 129 (461)
T KOG3098|consen 51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTS 129 (461)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhh
Confidence 4444 66777777899999999999999999999998887776666544 4577888899999999 8889999999999
Q ss_pred cCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16660 482 HSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFY 515 (594)
Q Consensus 482 ~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~ 515 (594)
...++...+..++.-.+...+.++|..+.-.+..
T Consensus 130 ~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~ 163 (461)
T KOG3098|consen 130 NSTRETIERNISIFWAIGQSSLIIGGIILFIYFQ 163 (461)
T ss_pred cCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeE
Confidence 9999999999999999999998888766555443
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=90.41 E-value=3.4 Score=43.14 Aligned_cols=143 Identities=13% Similarity=0.131 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHH-----hhchHHHHHHH-H
Q psy16660 366 QTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMN-----VLGAKHTIIIG-L 439 (594)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~d-----r~g~~~~l~~~-~ 439 (594)
+++..+...+.+...... ....+|..++.. |.|-.+.+.+...+.=-+ --++...+.| |+|||+..++- .
T Consensus 31 ~~illLl~LYllQGiP~G-L~~~iP~lL~ak-~vSyt~~a~fS~ay~P~s--LKllWaPiVDs~y~k~~GrrksWvvp~q 106 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIPLG-LIGAIPLLLQAK-GVSYTSQAIFSFAYWPFS--LKLLWAPIVDSVYSKRFGRRKSWVVPCQ 106 (510)
T ss_pred hhHHHHHHHHHHcCCchh-HhhhhHHHhcCC-CcchhhhhhhhhhhhHHH--HHHHHHhhhHHHHHHhhccccceeeehH
Confidence 445556666666666544 444888888853 777666555433222111 1233444455 99998754432 3
Q ss_pred HHHHHHHHHHhhh-----------hhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHH
Q psy16660 440 VFEMLQLMWYGFG-----------SQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGP 507 (594)
Q Consensus 440 ~~~~i~~~~~~~~-----------~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~ 507 (594)
.+.+..+..+... ++.......+++.-+. ..--.+...+......+++.|-++.......+.|.+++-
T Consensus 107 ~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~ 186 (510)
T KOG3574|consen 107 YLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGN 186 (510)
T ss_pred HHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhc
Confidence 3333333333321 1111121222333333 333455666666777788888888887777778877775
Q ss_pred HHHHH
Q psy16660 508 AMFGL 512 (594)
Q Consensus 508 ~~~g~ 512 (594)
.++-.
T Consensus 187 ~ifLa 191 (510)
T KOG3574|consen 187 VVFLA 191 (510)
T ss_pred ceeeE
Confidence 55433
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=87.30 E-value=42 Score=35.64 Aligned_cols=176 Identities=11% Similarity=0.145 Sum_probs=78.3
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q psy16660 365 DQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEML 444 (594)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i 444 (594)
+-.++..++........+..+.+..+.|.....+.+. .-.+...+.+.+.+...+...+--+...|....++..+..+
T Consensus 17 ~~v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~ 94 (406)
T KOG1479|consen 17 NLVYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLI 94 (406)
T ss_pred ccHHHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555556666555555554334333 33344444444444444444333333222211122111111
Q ss_pred HH-----HHHhh-------hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHH
Q psy16660 445 QL-----MWYGF-------GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFG 511 (594)
Q Consensus 445 ~~-----~~~~~-------~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g 511 (594)
.. +.+.. ....+...+..++.+++ +..........++ .|++... .+....++++.+.+.+.-
T Consensus 95 ~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytq----avm~G~a~aG~l~Sl~~i 169 (406)
T KOG1479|consen 95 AILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQ----AVMSGQALAGTLTSLLRI 169 (406)
T ss_pred HHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHH----HHHhcchhHhHHHHHHHH
Confidence 11 11111 11234445555666666 6666666666554 4554422 222334444444433322
Q ss_pred HHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhccC
Q psy16660 512 LIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIPE 570 (594)
Q Consensus 512 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 570 (594)
+..+...+ ...+....|.++.++.+++++++...++
T Consensus 170 -~tka~~~~----------------------~~~sA~~yF~~s~~~~llC~i~y~~l~~ 205 (406)
T KOG1479|consen 170 -LTKAAFSD----------------------SRTSALIYFITSTVILLLCFVLYLVLPK 205 (406)
T ss_pred -HHHHhcCC----------------------CCceeehhHHHHHHHHHHHHHHHHHhhc
Confidence 12221111 1122335677777777888877775544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 594 | |||
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 6e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 |
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 6e-09
Identities = 46/414 (11%), Positives = 96/414 (23%), Gaps = 63/414 (15%)
Query: 107 FLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLF 166
F FF G P + + G+I S L PL G LSD G + +
Sbjct: 17 FFYFFIMGAY-FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKY 75
Query: 167 LLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLKF 226
LL I V F+ F ++
Sbjct: 76 LLW------------------------IITGMLVMFAPFFIFIFG--------------- 96
Query: 227 IALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSA 286
L I F+ V E+ R + +
Sbjct: 97 -------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCV 149
Query: 287 TFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGA 346
+A +G + A+ + + F S +
Sbjct: 150 GWALGASI---VGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHS 206
Query: 347 PISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAV 406
S ++ + + L + V + E V
Sbjct: 207 AFS------LKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRV 260
Query: 407 FIAVIGTLSVSAQIIL----GCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAG 462
+ T+ + ++N +G K+ +++ ++++ F + +
Sbjct: 261 -FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILK 319
Query: 463 ILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGM-RGLCNGLGPAMFGLIF 514
L ++ + + + + L + G ++
Sbjct: 320 TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 4e-05
Identities = 43/327 (13%), Positives = 85/327 (25%), Gaps = 113/327 (34%)
Query: 25 IRSRKSILNDGIVTKVPLWQY----ICMDSLETTYVL----GRVRKLV----KSLIKSLV 72
I+ R + + + Y + + +++ + L+ K + L
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 73 KSTKSPVNSELFVWFVLQTSGIGEPSVYHALVVIFLEFFA-W---------------GLL 116
+T + ++ + + V +
Sbjct: 283 AATTTHISLDHHSM------TLTPDEV--------KSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 117 TMPIISVLNRTFPDH-----TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV 171
+ II+ R + L I+ L+ L RK+F ++V
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--------RKMFDRLSV 380
Query: 172 FVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEE-HERSLA--------Y 222
F IP + L W F +I V V + H+ SL
Sbjct: 381 FPPSAHIPTILLSLIW-FDVIKSD-------------VMVVVNKLHKYSLVEKQPKESTI 426
Query: 223 GLKFIALKI-------------------ILMTLDTWWFFAMISISGVFAVTFSVVFAYVA 263
+ I L++ I T D + F ++++
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD-SDDLIPPYLDQYF-------YSHIG 478
Query: 264 ---DVTEEHER----SLAYGLSFSFSQ 283
E ER + + L F F +
Sbjct: 479 HHLKNIEHPERMTLFRMVF-LDFRFLE 504
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 594 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.97 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.93 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.54 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.5 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.5 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.47 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.42 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.27 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.06 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=329.76 Aligned_cols=382 Identities=12% Similarity=0.048 Sum_probs=310.7
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhh
Q psy16660 99 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPI 178 (594)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~ 178 (594)
+..+.+..++..+..+. ..+.+|.+.+++ .+..+. |++.+++.++..++.+++|+++||+|||++++++.++.+++.
T Consensus 30 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 106 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKN-FALAMPYLVEQG-FSRGDL-GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM 106 (451)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHTTSST-TCSSCH-HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHh-ccHhHH-HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 34444455555555555 788999999999 776666 999999999999999999999999999999999998888887
Q ss_pred hh--h----cchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhcccc
Q psy16660 179 PL--M----TLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVF 251 (594)
Q Consensus 179 ~~--~----~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 251 (594)
++ + +.+++.++++|+++|++ +...+...+++.|++|+++|++++++
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~--------------------------- 159 (451)
T 1pw4_A 107 LFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV--------------------------- 159 (451)
T ss_dssp HHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHH---------------------------
T ss_pred HHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHH---------------------------
Confidence 76 5 66899999999999998 66788889999999999999999999
Q ss_pred chhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHhheec
Q psy16660 252 AVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYS-LSLVVAVATAVAILDVFFILVAV 330 (594)
Q Consensus 252 ~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~g-w~~~f~~~~~~~ll~~~~~~~~l 330 (594)
.+...++|.++||.+++++.+..| ||++|++.+++.++..++.++.+
T Consensus 160 --------------------------------~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 160 --------------------------------WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp --------------------------------HHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999888898 99999999988887777666778
Q ss_pred cCCCchhhccCCCCCCCC-------ccccCCchhh--HhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCh
Q psy16660 331 PESLPEKVRQASWGGAPI-------SWEQADPFAS--LRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDE 401 (594)
Q Consensus 331 ~e~~~~~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 401 (594)
||++++...+.+.+..+. +.+++...++ .+..+++|.++..++..++..........+.|.|+++.+|+++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 287 (451)
T 1pw4_A 208 RDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL 287 (451)
T ss_dssp CCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCH
T ss_pred cCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 887654322111110000 0000111122 4667789999999999999888888899999999998789999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHH-HHHHHHhhh--hhHHHHHHHHHHHHHh-hchHhHH
Q psy16660 402 VHVAVFIAVIGTLSVSAQIILGCLMNVL--GAKHTIIIGLVFEM-LQLMWYGFG--SQMWMMWAAGILASLA-SITYPAI 475 (594)
Q Consensus 402 ~~~g~~~~~~~i~~~~~~~~~g~l~dr~--g~~~~l~~~~~~~~-i~~~~~~~~--~~~~~~~~~~~l~g~~-~~~~~~~ 475 (594)
.+.+.+.+...++.+++.++.+++.||+ ++|+.+..+..+.. ++++++.+. .+.+...+..++.|++ +...+..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 367 (451)
T 1pw4_A 288 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLI 367 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHH
Confidence 9999999999999999999999999999 99988888776666 666666654 3566777777778887 7777888
Q ss_pred HHHHhhcCCCccchHHHHHHHHHHHH-HHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHH
Q psy16660 476 SALVSMHSDADRQGLVQGMVTGMRGL-CNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFG 554 (594)
Q Consensus 476 ~~~~~~~~p~~~~g~~~g~~~~~~~l-g~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 554 (594)
.+++.+.+|+++||+++|+.+...++ |..++|.+.|.+.+..|+. ..|.+.
T Consensus 368 ~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~----------------------------~~~~~~ 419 (451)
T 1pw4_A 368 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD----------------------------GGFMVM 419 (451)
T ss_dssp HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSH----------------------------HHHHHH
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH----------------------------HHHHHH
Confidence 89999999999999999999999999 9999999999999986654 677777
Q ss_pred HHHHHHHHHHHHhccC
Q psy16660 555 ALLVIAALLVATFIPE 570 (594)
Q Consensus 555 ~~~~~~~~~~~~~~~~ 570 (594)
+++.+++.++.+..++
T Consensus 420 ~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 420 IGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7777776666655543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=306.96 Aligned_cols=347 Identities=16% Similarity=0.153 Sum_probs=287.2
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh
Q psy16660 101 HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL 180 (594)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~ 180 (594)
.+....++..+..+. ..+.+|.+.++++.+..+. |++.+++.++..++.+++|+++||+|||++++++.++.+++.++
T Consensus 30 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~~~-g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 107 (438)
T 3o7q_A 30 LLCSLFFLWAVANNL-NDILLPQFQQAFTLTNFQA-GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHSCCCSHHH-HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 333444455555555 7889999999999887776 99999999999999999999999999999999999888887665
Q ss_pred h-----cchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchh
Q psy16660 181 M-----TLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVT 254 (594)
Q Consensus 181 ~-----~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 254 (594)
. +.+++.++++|++.|++ +...+...+++.|++|+++|++++++
T Consensus 108 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~------------------------------ 157 (438)
T 3o7q_A 108 FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNL------------------------------ 157 (438)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHH------------------------------
T ss_pred HHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHH------------------------------
Confidence 4 35899999999999998 67778889999999999999999999
Q ss_pred hhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHH-HhcC-------------------------h
Q psy16660 255 FSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLE-KTYS-------------------------L 308 (594)
Q Consensus 255 ~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~-~~~g-------------------------w 308 (594)
.+...++|.++||.+++++. +..+ |
T Consensus 158 -----------------------------~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 208 (438)
T 3o7q_A 158 -----------------------------AQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSV 208 (438)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhH
Confidence 99999999999999999988 5444 9
Q ss_pred HHHHHHHHHHHHHHHHHhhe-eccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHH
Q psy16660 309 SLVVAVATAVAILDVFFILV-AVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYS 387 (594)
Q Consensus 309 ~~~f~~~~~~~ll~~~~~~~-~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (594)
|++|++.+++.++..++.++ ..||++++++++ .++.+...++++.+++|.++...+..++....+.....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (438)
T 3o7q_A 209 QTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD---------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWS 279 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC---------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccccc---------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 99998877666665544333 244443221111 12234456778888999999999998888888888889
Q ss_pred HHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy16660 388 CLFVY-LKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILAS 466 (594)
Q Consensus 388 ~~~~~-~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g 466 (594)
+.|.| +++.+|.++.+.+.......++.+++.++.+++.||+++|+.+..+.++.+++++++.+.++.+..+ ..++.+
T Consensus 280 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g 358 (438)
T 3o7q_A 280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLI-ALTLCS 358 (438)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHH
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHH
Confidence 99999 8888899999999999999999999999999999999999999999999888888887777665544 346667
Q ss_pred Hh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhh-cc
Q psy16660 467 LA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH-VD 520 (594)
Q Consensus 467 ~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g-~~ 520 (594)
++ +..++...++..+..|++ ++++.++.. ...+|+.++|.+.|.+.|..| +.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~ 412 (438)
T 3o7q_A 359 AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIP 412 (438)
T ss_dssp HHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSG
T ss_pred HHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchH
Confidence 77 778899999989999866 888888877 778999999999999999987 54
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-33 Score=289.48 Aligned_cols=344 Identities=13% Similarity=0.148 Sum_probs=283.6
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh
Q psy16660 101 HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL 180 (594)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~ 180 (594)
.+....++..++.+. ..|.+|.+.++++.+..+. |++.+++.++..++.++.|+++||+|||+++..+.++.+++..+
T Consensus 4 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTI-YIPAIADMARDLNVREGAV-QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHTTSSSTTHHH-HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhhhhHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 445566667777676 7899999999998887766 99999999999999999999999999999999998888887766
Q ss_pred --hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhh
Q psy16660 181 --MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSV 257 (594)
Q Consensus 181 --~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 257 (594)
++.+++.+++.|+++|++ +...+...+++.|++|+++|++++++
T Consensus 82 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 128 (375)
T 2gfp_A 82 AVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSL--------------------------------- 128 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHH---------------------------------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHH---------------------------------
Confidence 566999999999999998 66778889999999999999999999
Q ss_pred hhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchh
Q psy16660 258 VFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEK 337 (594)
Q Consensus 258 ~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~ 337 (594)
.+....+|..+||.+++++.+..+||+.|++.+++.++..+...+.+||+++++
T Consensus 129 --------------------------~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
T 2gfp_A 129 --------------------------LNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD 182 (375)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT
T ss_pred --------------------------HHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC
Confidence 999999999999999999998889999999998888776665666788875443
Q ss_pred hccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy16660 338 VRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVS 417 (594)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~ 417 (594)
+++ ++..+++++.+|+|.++...+..++..........+.|.|+++.+|.++.+.+.+.....++.++
T Consensus 183 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 250 (375)
T 2gfp_A 183 APR------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFF 250 (375)
T ss_dssp CCC------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccc------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 221 11223455667889999988888888888888888899999888899999999999999999999
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHH-HHHHHH--HHhh--hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHH
Q psy16660 418 AQIILGCLMNVLGAKHTIIIGLVF-EMLQLM--WYGF--GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLV 491 (594)
Q Consensus 418 ~~~~~g~l~dr~g~~~~l~~~~~~-~~i~~~--~~~~--~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~ 491 (594)
+.++.+++.||.+++ +..+..+ ...+.. .... .++.+..++..++.+++ +...+...++..|..| ++||++
T Consensus 251 ~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~ 327 (375)
T 2gfp_A 251 GAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTA 327 (375)
T ss_dssp HHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchH
Confidence 999999999998873 2333322 222222 2222 23566666777788888 7788899999999997 899999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 492 QGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 492 ~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
.|+.+...++|..++|.+.|.+.+..++.
T Consensus 328 ~g~~~~~~~~g~~~~~~~~g~l~~~~~~~ 356 (375)
T 2gfp_A 328 GALVGGLQNIGSGVLASLSAMLPQTGQGS 356 (375)
T ss_dssp HHHHHHHHHHHHHCCSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999998876654
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-31 Score=287.78 Aligned_cols=358 Identities=11% Similarity=0.073 Sum_probs=264.3
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhHHHHHHhh------CCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcc-cCchhhHHH
Q psy16660 97 PSVYHALVVIFLEFFAWGLLTMPIISVLNRT------FPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL-WGRKLFLLI 169 (594)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr-~Grr~~l~~ 169 (594)
+.++.+....++..+++.. ..+.++.+.++ ++.+..+. |++.+++.++..++.++.|+++|| +|||+++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~ 90 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYG-MRAILLYYMWFLISTGDLHITRATA-ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFW 90 (491)
T ss_dssp THHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSCCSCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccchhhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 4455666666666666655 45556665544 67776655 999999999999999999999999 899999999
Q ss_pred HHHHhhhhhhh--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhccccccc--ccchhchhHHHHHHHHhhhhhhhHHHH
Q psy16660 170 TVFVTCLPIPL--MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHE--RSLAYGLKFIALKIILMTLDTWWFFAM 244 (594)
Q Consensus 170 ~~~~~~i~~~~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~--r~~~~g~~~~~~~~~~~~~~~~~~~~~ 244 (594)
+.++.+++.++ ++.+++.++++|+++|++ +...+...+++.|++|+++ |+.++++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-------------------- 150 (491)
T 4aps_A 91 GGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSI-------------------- 150 (491)
T ss_dssp HHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehH--------------------
Confidence 99888888766 566999999999999998 6678888999999999988 6667777
Q ss_pred hhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q psy16660 245 ISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVF 324 (594)
Q Consensus 245 ~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~ 324 (594)
++...++|..+||.+++++.+..|||++|++.++..++..+
T Consensus 151 ---------------------------------------~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 191 (491)
T 4aps_A 151 ---------------------------------------FVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLL 191 (491)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999998877776665
Q ss_pred HhheeccCCCchhhccCCCCCCCCcccc--------------------------------------------------CC
Q psy16660 325 FILVAVPESLPEKVRQASWGGAPISWEQ--------------------------------------------------AD 354 (594)
Q Consensus 325 ~~~~~l~e~~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~ 354 (594)
+.++..|+..+++.++.+.+....+.++ ++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (491)
T 4aps_A 192 VYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISS 271 (491)
T ss_dssp HHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhc
Confidence 5444333322211111100000000000 00
Q ss_pred chhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Q psy16660 355 PFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHT 434 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~ 434 (594)
.........+....+.+.+..++.+..+......++.|.++.++.+..+.+.......++.+++.++.+++.||++||+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~ 351 (491)
T 4aps_A 272 VKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP 351 (491)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCC
Confidence 00000111122234555555666666667777788999988778777778888888899999999999999999998755
Q ss_pred HH-----HHHHHHHHHHHHHhhhh---------hHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHH
Q psy16660 435 II-----IGLVFEMLQLMWYGFGS---------QMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMR 499 (594)
Q Consensus 435 l~-----~~~~~~~i~~~~~~~~~---------~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 499 (594)
.. .+..+.+++++++.... +.+......++.+++ +...+..++++.|..|+++||+++|+.+...
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 431 (491)
T 4aps_A 352 SSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSS 431 (491)
T ss_dssp -CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44 67777777766655432 556667777888888 7778889999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHH
Q psy16660 500 GLCNGLGPAMFGLIFY 515 (594)
Q Consensus 500 ~lg~~lg~~~~g~l~~ 515 (594)
++|..++|.+.+.+.+
T Consensus 432 ~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 432 SVGSALNAQLVTLYNA 447 (491)
T ss_dssp HHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887754
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=278.51 Aligned_cols=380 Identities=13% Similarity=0.065 Sum_probs=259.2
Q ss_pred hhhHHHHHHhhCCCc-------hhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh---------
Q psy16660 117 TMPIISVLNRTFPDH-------TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--------- 180 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~-------~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--------- 180 (594)
..+.+|.+.++++.. +....|++.+++.++.+++++++|+++||+|||++++++.+++.++.++
T Consensus 31 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~ 110 (491)
T 4gc0_A 31 ISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFT 110 (491)
T ss_dssp GGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTS
T ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 566677666655321 2334599999999999999999999999999999999998887776554
Q ss_pred -----------hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhc
Q psy16660 181 -----------MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISIS 248 (594)
Q Consensus 181 -----------~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (594)
++.|+++++++|+++|++ ++..+....+++|+.|+++|++..++
T Consensus 111 ~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~------------------------ 166 (491)
T 4gc0_A 111 SINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF------------------------ 166 (491)
T ss_dssp CSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH------------------------
T ss_pred hhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh------------------------
Confidence 356899999999999998 77888999999999999999999998
Q ss_pred cccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHh--------cChHHHHHHHHHHHH
Q psy16660 249 GVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKT--------YSLSLVVAVATAVAI 320 (594)
Q Consensus 249 g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~--------~gw~~~f~~~~~~~l 320 (594)
.+....+|.++++.++..+... .+||..+.+..+..+
T Consensus 167 -----------------------------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (491)
T 4gc0_A 167 -----------------------------------NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPAL 211 (491)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHH
T ss_pred -----------------------------------hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhh
Confidence 8888889999888888776542 358888887777666
Q ss_pred HHHHHhheeccCCCchhhccCCCCCCCCccc--------------cC------CchhhHhhhccchhHHHHHHHHHHHHH
Q psy16660 321 LDVFFILVAVPESLPEKVRQASWGGAPISWE--------------QA------DPFASLRKVGKDQTILMLCVTVFLSYL 380 (594)
Q Consensus 321 l~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~--------------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (594)
+..+ ..+.+||+++....+.+.+++....+ .. +.........+.+..........+..+
T Consensus 212 ~~~~-~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (491)
T 4gc0_A 212 LFLM-LLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQF 290 (491)
T ss_dssp HHHH-HGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHH
T ss_pred hhhh-hhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHH
Confidence 6544 45569999865433322111100000 00 000001112233333333333333322
Q ss_pred hhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh----hhHH
Q psy16660 381 PEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFG----SQMW 456 (594)
Q Consensus 381 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~----~~~~ 456 (594)
.......++..++.+..+.+...........++..+++.++.+++.||+|||+.++.+.....++++.++.. ...+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 370 (491)
T 4gc0_A 291 VGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI 370 (491)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred hhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchH
Confidence 222222233334444467787777788888889999999999999999999999999988888777665532 1223
Q ss_pred HHHHHHHHHHHh--hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccc
Q psy16660 457 MMWAAGILASLA--SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLAN 534 (594)
Q Consensus 457 ~~~~~~~l~g~~--~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 534 (594)
...+...++..+ ....+..+.+.+|.+|.+.|+++.|+.+...++++++++.+++.+.+.....
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~-------------- 436 (491)
T 4gc0_A 371 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV-------------- 436 (491)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 333333333322 3445778899999999999999999999999999999999888775532211
Q ss_pred cCCCCCCCCCcCCChhHHHHHHHHHH-HHHHHHhccCcccccCcC
Q psy16660 535 RTNNVNSYPSVIPGPPFVFGALLVIA-ALLVATFIPESIVTRSVG 578 (594)
Q Consensus 535 ~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 578 (594)
...+....|++.+++.++ .++..+++||+|++.-+|
T Consensus 437 --------~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLee 473 (491)
T 4gc0_A 437 --------AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEE 473 (491)
T ss_dssp --------HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHH
T ss_pred --------hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHH
Confidence 001223555555544444 445567889998876443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=269.40 Aligned_cols=380 Identities=11% Similarity=0.126 Sum_probs=257.7
Q ss_pred cCCchhHHHHHHHHHHHHhhhhhhhHHHHHHhh-CCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHH
Q psy16660 95 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRT-FPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 173 (594)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~ 173 (594)
+++..+.+....++..++++. ..|.+|.+.++ ++.+..+. |++.+++.++..++++++|+++||+|||++++++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~g~s~~~~-g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~ 82 (417)
T 2cfq_A 5 KNTNFWMFGLFFFFYFFIMGA-YFPFFPIWLHDINHISKSDT-GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITG 82 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH-HTTTHHHHHHTTTCCCTTTS-HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 455666666666777777777 78999998765 66666655 9999999999999999999999999999999988776
Q ss_pred hhhhhhh-h--cc--hH-HHHHHHHHHHHHH-hHHHHHHHHHhhccccc--ccccchhchhHHHHHHHHhhhhhhhHHHH
Q psy16660 174 TCLPIPL-M--TL--DT-WWFFAMISISGVF-AVTFSVVFAYVADVTEE--HERSLAYGLKFIALKIILMTLDTWWFFAM 244 (594)
Q Consensus 174 ~~i~~~~-~--~~--~~-~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~--~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 244 (594)
.++.... + .. .. ..++..+++.|++ +...+.....+.++.++ ++|+..++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~-------------------- 142 (417)
T 2cfq_A 83 MLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGR-------------------- 142 (417)
T ss_dssp TTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHH--------------------
Confidence 6553211 1 11 10 1122334444433 22222222222222221 223333343
Q ss_pred hhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q psy16660 245 ISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVF 324 (594)
Q Consensus 245 ~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~ 324 (594)
......+|..++|.+++++.+ .+|++.|++.++..++..+
T Consensus 143 ---------------------------------------~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~ 182 (417)
T 2cfq_A 143 ---------------------------------------ARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAV 182 (417)
T ss_dssp ---------------------------------------HSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHH
T ss_pred ---------------------------------------HHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHH
Confidence 666678889999999999887 6899999987766554443
Q ss_pred HhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCC---Ch
Q psy16660 325 FILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGF---DE 401 (594)
Q Consensus 325 ~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---s~ 401 (594)
..++..||+++.. ++.+.+ .+.+++...+++++.+++|.++...+..++..........++|.|+.+.++. +.
T Consensus 183 ~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (417)
T 2cfq_A 183 LLFFAKTDAPSSA-TVANAV---GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGT 258 (417)
T ss_dssp HSCSSCCCCSCSS-CSSSSS---SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHT
T ss_pred HHHHcCccccccc-cccccc---ccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCh
Confidence 3333233332111 100000 0001112234566777899988777665555545455556678888765542 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHh
Q psy16660 402 VHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVS 480 (594)
Q Consensus 402 ~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~ 480 (594)
...++......++.+++.++.+++.||+|+|+.+..+..+.+++++++.+.++.+.+.+..++.+++ +...+....+..
T Consensus 259 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 338 (417)
T 2cfq_A 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT 338 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888889999999999999999999988888888877777766766666666666666 556667788999
Q ss_pred hcCCCccchHHHHH-HHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHH
Q psy16660 481 MHSDADRQGLVQGM-VTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVI 559 (594)
Q Consensus 481 ~~~p~~~~g~~~g~-~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 559 (594)
|..|++.||++++. ++...++|+.++|.+.|.+.+..|+. ..|.+.+++.+
T Consensus 339 ~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~----------------------------~~f~~~~~~~l 390 (417)
T 2cfq_A 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQ----------------------------GAYLVLGLVAL 390 (417)
T ss_dssp HHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHH----------------------------HHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcH----------------------------HHHHHHHHHHH
Confidence 99999999999999 48888999999999999999987654 67777777777
Q ss_pred HHHHHHHhc
Q psy16660 560 AALLVATFI 568 (594)
Q Consensus 560 ~~~~~~~~~ 568 (594)
++.++.+..
T Consensus 391 ~~~~~~~~~ 399 (417)
T 2cfq_A 391 GFTLISVFT 399 (417)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHhh
Confidence 666655443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-26 Score=248.59 Aligned_cols=360 Identities=11% Similarity=0.037 Sum_probs=235.7
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhHHHHHH-hhCC------CchhHHHHHHHHHHHHHHHHHhhHhhhhhccc-CchhhHH
Q psy16660 97 PSVYHALVVIFLEFFAWGLLTMPIISVLN-RTFP------DHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW-GRKLFLL 168 (594)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~-Grr~~l~ 168 (594)
+.++.+.+..++..+++.. ..+.++.+. ++++ .+..+. |++.+++.++..++.++.|+++||+ |||+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYG-MRNILTPFLMTALLLSIPEELRGAVA-KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHH-HHHHHHHHHHHSCSSCCSSSTTTTTH-HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccccCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3455566667777777665 566777665 4566 555555 9999999999999999999999999 9999999
Q ss_pred HHHHHhhhhhhh--hcc-hHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHH
Q psy16660 169 ITVFVTCLPIPL--MTL-DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAM 244 (594)
Q Consensus 169 ~~~~~~~i~~~~--~~~-~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 244 (594)
++.++.+++.++ ++. +++.+++.|++.|++ +...+...+++.|++|+++|+++.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-------------------- 149 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA-------------------- 149 (524)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHH--------------------
Confidence 998888877666 566 899999999999998 66788889999999999999765444
Q ss_pred hhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q psy16660 245 ISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVF 324 (594)
Q Consensus 245 ~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~ 324 (594)
++. .....++|..+||.+++++.+..||+++|++.+++.++..+
T Consensus 150 ------------------------------~~~------~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 150 ------------------------------FDM------FYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATV 193 (524)
T ss_dssp ------------------------------HHH------HHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------HHH------HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 111 77788999999999999999889999999999887777655
Q ss_pred HhheeccCCCchhhccCCCCCC-C-----CccccCC-ch-----------------------------------------
Q psy16660 325 FILVAVPESLPEKVRQASWGGA-P-----ISWEQAD-PF----------------------------------------- 356 (594)
Q Consensus 325 ~~~~~l~e~~~~~~~~~~~~~~-~-----~~~~~~~-~~----------------------------------------- 356 (594)
+.++..|+.+++++++.+..+. + .+.+..+ ..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (524)
T 2xut_A 194 FFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVG 273 (524)
T ss_dssp HHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccc
Confidence 5444333221111110000000 0 0000000 00
Q ss_pred -hhH---h---------hhccchhHHHHH---HHHHHHHHhhhhHHHHHHHHHHHHhCCCh-hHHHHHHHHHHHHHHHHH
Q psy16660 357 -ASL---R---------KVGKDQTILMLC---VTVFLSYLPEAGQYSCLFVYLKLVMGFDE-VHVAVFIAVIGTLSVSAQ 419 (594)
Q Consensus 357 -~~~---~---------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~i~~~~~~ 419 (594)
.++ . ...+.+..+... ....+.+.........++.+..+ .+.+. ...+.+.....++.++..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 352 (524)
T 2xut_A 274 AGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAND-MVKPQWFEPAMMQALNPLLVMLLI 352 (524)
T ss_dssp TGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHH-SCCCSSSCHHHHHTTSGGGHHHHG
T ss_pred cchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHh-cCCCeeecHHHHHHHHHHHHHHhH
Confidence 000 0 001112222111 11112222222222333344333 23221 235555555555555665
Q ss_pred HHHHHHH----Hhhch----HHHHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHHHh-hchHhHHHHHHhh
Q psy16660 420 IILGCLM----NVLGA----KHTIIIGLVFEMLQLMWYGFG---------SQMWMMWAAGILASLA-SITYPAISALVSM 481 (594)
Q Consensus 420 ~~~g~l~----dr~g~----~~~l~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~ 481 (594)
.+.+++. +|.++ ++.+..+.++.+++++++... .+.+...+..++.+++ +...+..++++.+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 432 (524)
T 2xut_A 353 PFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYS 432 (524)
T ss_dssp GGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555543 44432 356677777788877776653 2556666777888888 7888999999999
Q ss_pred cCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16660 482 HSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFY 515 (594)
Q Consensus 482 ~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~ 515 (594)
..|+++||+++|+.+...++|+.++|.+.|.+.+
T Consensus 433 ~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 433 QAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred hCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998876
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.6e-13 Score=145.55 Aligned_cols=175 Identities=18% Similarity=0.190 Sum_probs=154.2
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-----hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHH
Q psy16660 366 QTILMLCVTVFLSYLPEAGQYSCLFVYLKLV-----MGFDEVHVAVFIAVIGTLSVSAQIILGCLMNV-LGAKHTIIIGL 439 (594)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~l~~~~ 439 (594)
+.++.++...++..+.+.....+++.|+++. +|.+..+.+++.+...++..++.++.|++.|| +|||+.+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~ 92 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG 92 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 4567777777777788888888999999998 99999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCcc--chHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16660 440 VFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADR--QGLVQGMVTGMRGLCNGLGPAMFGLIFYM 516 (594)
Q Consensus 440 ~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~--~g~~~g~~~~~~~lg~~lg~~~~g~l~~~ 516 (594)
++.+++.+++.+.++.+.++++.++.|++ +...+...+++.|.+|+++ |+++.+..+...++|..++|.+.+.+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 172 (491)
T 4aps_A 93 VLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA 172 (491)
T ss_dssp HHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999 8889999999999999988 77888889999999999999999999998
Q ss_pred hhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhc
Q psy16660 517 FHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFI 568 (594)
Q Consensus 517 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 568 (594)
.|++ ..|.+.++..+++.+..+..
T Consensus 173 ~g~~----------------------------~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 173 AGYH----------------------------VAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp SCHH----------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHH----------------------------HHHHHHHHHHHHHHHHHHHh
Confidence 7765 67777766666665555433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-12 Score=138.82 Aligned_cols=146 Identities=12% Similarity=0.087 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q psy16660 368 ILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLM 447 (594)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~ 447 (594)
+..+++..++..+.........|. +++.+|.+..+.|++.+...++.+++.++.|++.||+|||+.+..+.++.+++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 106 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA 106 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 334444444444444444445555 4556899999999999999999999999999999999999999999999999998
Q ss_pred HH---hhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16660 448 WY---GFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIF 514 (594)
Q Consensus 448 ~~---~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~ 514 (594)
+. ...++.+.+++..++.|++ +...+...+++.|..|+++|+++.++.+....+|..++|.+.+.+.
T Consensus 107 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 7788999999999999999 8889999999999999999999999999999999999999999998
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=6.3e-13 Score=141.52 Aligned_cols=154 Identities=14% Similarity=0.184 Sum_probs=134.4
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q psy16660 365 DQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEML 444 (594)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i 444 (594)
.+.+....+..++...........+|.+.++ + .+..+.|++.+...++..++.++.|++.||+|||+.+..+.++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence 3445555566666666655666667766655 5 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh----hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhh-
Q psy16660 445 QLMWYGF----GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH- 518 (594)
Q Consensus 445 ~~~~~~~----~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g- 518 (594)
+.+++.+ .++.+.+++..++.|++ +...+...+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..|
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 184 (451)
T 1pw4_A 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND 184 (451)
T ss_dssp HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCC
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999988 88888899999999999 88899999999999999999999999999999999999999999988776
Q ss_pred cc
Q psy16660 519 VD 520 (594)
Q Consensus 519 ~~ 520 (594)
++
T Consensus 185 w~ 186 (451)
T 1pw4_A 185 WH 186 (451)
T ss_dssp ST
T ss_pred HH
Confidence 55
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=143.14 Aligned_cols=176 Identities=11% Similarity=0.050 Sum_probs=151.2
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhC------CChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHH
Q psy16660 365 DQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMG------FDEVHVAVFIAVIGTLSVSAQIILGCLMNVL-GAKHTIII 437 (594)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~-g~~~~l~~ 437 (594)
++.++.+.+..++..+.......+++.|+++.+| +++.+.|++.+...++.+++.++.|++.||+ |+|+.+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~ 90 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW 90 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 4556667777777778888888899999988889 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHH---HHHHHHHHHhHHHHHHHH
Q psy16660 438 GLVFEMLQLMWYGFGS-QMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGM---VTGMRGLCNGLGPAMFGL 512 (594)
Q Consensus 438 ~~~~~~i~~~~~~~~~-~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~---~~~~~~lg~~lg~~~~g~ 512 (594)
+.++.+++.+++.+.+ +.+.+++..++.|++ +...+...+++.|.+|+++|+++.+. .+...++|..++|.+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~ 170 (524)
T 2xut_A 91 LSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPL 170 (524)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888 888888889999999 88899999999999999999877666 889999999999999999
Q ss_pred HHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhc
Q psy16660 513 IFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFI 568 (594)
Q Consensus 513 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 568 (594)
+.+..|++ ..|.+.+++.+++.+..+..
T Consensus 171 l~~~~g~~----------------------------~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 171 LLKNFGAA----------------------------VAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHHTSCHH----------------------------HHHHHHHHHHHHHHHHHHSS
T ss_pred HhccccHH----------------------------HHHHHHHHHHHHHHHHHHHh
Confidence 98876654 67777776666665555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.4e-13 Score=137.39 Aligned_cols=150 Identities=14% Similarity=0.115 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q psy16660 370 MLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWY 449 (594)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~ 449 (594)
.++...++...........+|.+.+ .+|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+.+++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMAR-DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 3445555555555556666666554 479999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 450 GFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 450 ~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
.+.++.+.+++..++.|++ +...+...+++.|..|+++|+++++..+....+|..++|.+.+.+.+..|++
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 154 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR 154 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH
Confidence 9999999999999999999 8889999999999999999999999999999999999999999998877755
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.3e-11 Score=126.11 Aligned_cols=157 Identities=12% Similarity=0.072 Sum_probs=120.2
Q ss_pred HHHHHHhhC-CCc--hhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHH
Q psy16660 120 IISVLNRTF-PDH--TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISI 194 (594)
Q Consensus 120 ~~~~~~~~~-~~~--~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l 194 (594)
.+|.+..+. +.. +....|+..++..++..++.++.|+++||+|||+++..+.++.+++... +..+.+.+++..++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 321 (417)
T 2cfq_A 242 QFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTL 321 (417)
T ss_dssp HHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTH
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 356555443 221 2334488888888899999999999999999999988887777666544 34467777777777
Q ss_pred HHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhh
Q psy16660 195 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSL 273 (594)
Q Consensus 195 ~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~ 273 (594)
.+++ ....+...+++.|.+|++.|+.+.++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~------------------------------------------------- 352 (417)
T 2cfq_A 322 HMFEVPFLLVGCFKYITSQFEVRFSATIYLV------------------------------------------------- 352 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-------------------------------------------------
Confidence 7776 44556667899999999999888776
Q ss_pred hhcccccccch-hHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCc
Q psy16660 274 AYGLSFSFSQV-SATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLP 335 (594)
Q Consensus 274 ~~g~~~~~~~~-~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~ 335 (594)
. +....+|..+||.++|++.+..|++..|.+.+++.+++.++.++..||+++
T Consensus 353 ----------~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 353 ----------CFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp ----------HHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred ----------HHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 5 667789999999999999988899999999888888877766666666443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.1e-09 Score=114.42 Aligned_cols=115 Identities=10% Similarity=-0.018 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHH
Q psy16660 402 VHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYG------------------FGSQMWMMWAAGI 463 (594)
Q Consensus 402 ~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~------------------~~~~~~~~~~~~~ 463 (594)
.+.|++.+...++.++|.++.|+++||+|||+.+.++.++..++.++.+ .+++.+.++++-+
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~ 134 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI 134 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence 4567888889999999999999999999999999999999999888776 3678889999999
Q ss_pred HHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16660 464 LASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYM 516 (594)
Q Consensus 464 l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~ 516 (594)
+.|++ +...+....+++|..|+++|++..++.+....+|..+++.+...+...
T Consensus 135 l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~ 188 (491)
T 4gc0_A 135 IGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS 188 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence 99999 889999999999999999999999999999999998888877766544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 594 | ||||
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 5e-05 |
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 43.6 bits (101), Expect = 5e-05
Identities = 38/419 (9%), Positives = 97/419 (23%), Gaps = 53/419 (12%)
Query: 97 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGA 156
+ + + F FF G P + + G+I S L PL G
Sbjct: 7 TNFWMFGLFFFFYFFIMGAY-FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGL 65
Query: 157 LSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEH 216
LSD G + +LL + + + +
Sbjct: 66 LSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP---------------------------- 97
Query: 217 ERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYG 276
+ ++ S V + F A E ++
Sbjct: 98 ----------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRR 135
Query: 277 LSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPE 336
+F F + ++ + + + + IL + A ++
Sbjct: 136 SNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALIL-AVLLFFAKTDAPSS 194
Query: 337 KVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLV 396
+ G ++ R+ L + + + + +
Sbjct: 195 ATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATG 254
Query: 397 MGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMW 456
V V + + + G ++ G + + + S +
Sbjct: 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALE 314
Query: 457 MMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGM-RGLCNGLGPAMFGLIF 514
++ + ++ + + + + L + G ++
Sbjct: 315 VVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 594 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.43 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.29 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.9e-33 Score=296.00 Aligned_cols=343 Identities=12% Similarity=0.049 Sum_probs=267.5
Q ss_pred hhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhhh--c----chHHHHHH
Q psy16660 117 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLM--T----LDTWWFFA 190 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~~--~----~~~~~l~~ 190 (594)
.....|. .++++.+..+. |++.+++.+++.++.+++|+++||+|||+++.++.++.+++.++. + .+++.+++
T Consensus 44 ~~~~~p~-~~~~g~s~~~~-g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (447)
T d1pw4a_ 44 FALAMPY-LVEQGFSRGDL-GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 121 (447)
T ss_dssp HHHHHHH-TTSSTTCSSCH-HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHH
T ss_pred HHHHHHH-HHHhCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHH
Confidence 3445554 45678777777 999999999999999999999999999999999988877776652 2 37789999
Q ss_pred HHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhh
Q psy16660 191 MISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEH 269 (594)
Q Consensus 191 ~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~ 269 (594)
.|++.|++ +...+...+++.|++|+++|++++++
T Consensus 122 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~--------------------------------------------- 156 (447)
T d1pw4a_ 122 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV--------------------------------------------- 156 (447)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHH---------------------------------------------
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccc---------------------------------------------
Confidence 99999998 66788899999999999999999999
Q ss_pred hhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHhheeccCCCchhhccCCCCCC--
Q psy16660 270 ERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKT-YSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGA-- 346 (594)
Q Consensus 270 ~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~-~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~~~~~~~~~~-- 346 (594)
.+....+|..++|.+++.+... .+||+.|++.+++.++..++.++.++|++++.......+..
T Consensus 157 --------------~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (447)
T d1pw4a_ 157 --------------WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND 222 (447)
T ss_dssp --------------HHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC
T ss_pred --------------cccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhh
Confidence 9999999999999998887664 47999999988888877777677677665433222111100
Q ss_pred -------CCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q psy16660 347 -------PISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQ 419 (594)
Q Consensus 347 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~ 419 (594)
+.+.+........+..++++.++......++..........+.+.|+++.++.+..+.+.......++.+++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (447)
T d1pw4a_ 223 YPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGT 302 (447)
T ss_dssp -------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhh
Confidence 0011111222345667789999999888888888888889999999998889999999999999999999999
Q ss_pred HHHHHHHHhhchHHHHHHHHHH---HHHHHHHHhh--hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHH
Q psy16660 420 IILGCLMNVLGAKHTIIIGLVF---EMLQLMWYGF--GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQG 493 (594)
Q Consensus 420 ~~~g~l~dr~g~~~~l~~~~~~---~~i~~~~~~~--~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g 493 (594)
++.|++.||+++++........ ..++...+.. ..+.+...+..++.|++ +...+....+..|.+|++.+|++.|
T Consensus 303 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g 382 (447)
T d1pw4a_ 303 LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 382 (447)
T ss_dssp HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred hhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999876433333222 2222222222 34567777777777877 6777888899999999999999999
Q ss_pred HHHHHHHHH-HhHHHHHHHHHHHHhhcc
Q psy16660 494 MVTGMRGLC-NGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 494 ~~~~~~~lg-~~lg~~~~g~l~~~~g~~ 520 (594)
+.+...+++ ..++|.+.|.+.|..|+.
T Consensus 383 ~~~~~~~~~g~~~~~~~~g~~~~~~g~~ 410 (447)
T d1pw4a_ 383 FTGLFGYLGGSVAASAIVGYTVDFFGWD 410 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 999988874 566899999999987755
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.1e-28 Score=255.23 Aligned_cols=360 Identities=11% Similarity=0.110 Sum_probs=249.0
Q ss_pred cCCchhHHHHHHHHHHHHhhhhhhhHHHHHHhh-CCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHH
Q psy16660 95 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRT-FPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 173 (594)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~ 173 (594)
|++.++.+.+..|+..++++. ..|.+|.+.++ ++.+..+. |++.+++.++..++++++|+++||+|||++++++..+
T Consensus 5 kn~~~~~l~~~~f~~~~~~~~-~~~~l~~~l~~~~g~s~~~~-g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~ 82 (417)
T d1pv7a_ 5 KNTNFWMFGLFFFFYFFIMGA-YFPFFPIWLHDINHISKSDT-GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITG 82 (417)
T ss_dssp HSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 467778888888999999888 89999987654 67676665 9999999999999999999999999999999988777
Q ss_pred hhhhhhhh--cchHHH----HHHHHHHHHHH-hHHHHHHHHHhhccccc--ccccchhchhHHHHHHHHhhhhhhhHHHH
Q psy16660 174 TCLPIPLM--TLDTWW----FFAMISISGVF-AVTFSVVFAYVADVTEE--HERSLAYGLKFIALKIILMTLDTWWFFAM 244 (594)
Q Consensus 174 ~~i~~~~~--~~~~~~----l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~--~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 244 (594)
..++..++ ..+... .++.+.+.+.+ +...........+..++ +++.+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 142 (417)
T d1pv7a_ 83 MLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGR-------------------- 142 (417)
T ss_dssp HHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHH--------------------
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHH--------------------
Confidence 76665552 223222 23334443332 22222222222221111 122223333
Q ss_pred hhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q psy16660 245 ISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVF 324 (594)
Q Consensus 245 ~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~ 324 (594)
.......+..++|.+++.+.+ .+|+..+........+..+
T Consensus 143 ---------------------------------------~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~ 182 (417)
T d1pv7a_ 143 ---------------------------------------ARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAV 182 (417)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------Hhhhhcccccccccccccccc-ccccccccchhhHHHHHHH
Confidence 777788889999999999887 4566666655555555556
Q ss_pred HhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---hCCCh
Q psy16660 325 FILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLV---MGFDE 401 (594)
Q Consensus 325 ~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~ 401 (594)
+.++..+|++.+++++++.+ +.+............+++..+....................+.+.... .+.+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (417)
T d1pv7a_ 183 LLFFAKTDAPSSATVANAVG----ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGT 258 (417)
T ss_dssp HHHSSCCCSCSSSCSSHHHH----SCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred HHHHHhcccccchhhhhhhh----hhcccccccccccccccccccchhhhhHHHHHHHHhhhccccccccccccccccch
Confidence 66666666554332221111 001112223333444555555444444444433333333333333221 12344
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHh
Q psy16660 402 VHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVS 480 (594)
Q Consensus 402 ~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~ 480 (594)
...+.......++..++..+.+++.||.++++.+..+..+.+++.+++.+.++.+..++..++.+++ +...+...++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 338 (417)
T d1pv7a_ 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT 338 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567778888888889999999999999999999999999999999999999999999999999998 888999999999
Q ss_pred hcCCCccchHHHHHH-HHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 481 MHSDADRQGLVQGMV-TGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 481 ~~~p~~~~g~~~g~~-~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
|.+|++.||++.|+. +....+|..++|.+.|.+.|..|++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~ 379 (417)
T d1pv7a_ 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQ 379 (417)
T ss_dssp HHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Confidence 999999999999985 5567899999999999999998866
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=3.1e-12 Score=132.91 Aligned_cols=129 Identities=16% Similarity=0.263 Sum_probs=114.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHH
Q psy16660 389 LFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGS----QMWMMWAAGIL 464 (594)
Q Consensus 389 ~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l 464 (594)
...++++ +|++..+.|++.+...++..++.++.|+++||+|||+.+..+.++.+++.++.++.. +.+.+++..++
T Consensus 47 ~~p~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (447)
T d1pw4a_ 47 AMPYLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFL 125 (447)
T ss_dssp HHHHTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHH
T ss_pred HHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHH
Confidence 3345555 799999999999999999999999999999999999999999999999888877653 45667777888
Q ss_pred HHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy16660 465 ASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH 518 (594)
Q Consensus 465 ~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g 518 (594)
.|++ +...+...+++.+.+|+++|++++|+.+....+|..++|.+.+.+.+..+
T Consensus 126 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 180 (447)
T d1pw4a_ 126 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 180 (447)
T ss_dssp HHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred HHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhh
Confidence 8888 78889999999999999999999999999999999999999998887654
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=5.3e-12 Score=128.39 Aligned_cols=145 Identities=12% Similarity=0.065 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHH-hHHHHHHHHHh
Q psy16660 133 FLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISISGVF-AVTFSVVFAYV 209 (594)
Q Consensus 133 ~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i 209 (594)
....+...+...++..++.++.+++.||+|+|+.+.++.++.+++.++ +..+.+.+++..++.|++ +...+...+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 337 (417)
T d1pv7a_ 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888889999999999999999999999999988887777666 556889999999999998 66778889999
Q ss_pred hcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhhhhcccccccch-hHHH
Q psy16660 210 ADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQV-SATF 288 (594)
Q Consensus 210 ~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~-~~~~ 288 (594)
.|.+|+++|++..++ . +...
T Consensus 338 ~~~~~~~~~~~~~~~-----------------------------------------------------------~~~~~~ 358 (417)
T d1pv7a_ 338 TSQFEVRFSATIYLV-----------------------------------------------------------CFCFFK 358 (417)
T ss_dssp HHHSCGGGHHHHHHH-----------------------------------------------------------HHTTTH
T ss_pred HHHCCHhHHHHHHHH-----------------------------------------------------------HHHHHH
Confidence 999999999998886 4 4556
Q ss_pred hhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCch
Q psy16660 289 AASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPE 336 (594)
Q Consensus 289 ~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~ 336 (594)
.+|..++|.++|++.+..|++..|++.+++.++..++..+.++++.+.
T Consensus 359 ~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (417)
T d1pv7a_ 359 QLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 789999999999999999999999999988888777777767665443
|